-- dump date 20140620_010315 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001265362.1 148545260 5194200 385..1902 1 NC_009512.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1902 dnaA 5194200 dnaA Pseudomonas putida F1 chromosomal replication initiation protein YP_001265362.1 385 D 351746 CDS YP_001265363.1 148545261 5190870 1943..3046 1 NC_009512.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3046 5190870 Pput_0002 Pseudomonas putida F1 DNA polymerase III subunit beta YP_001265363.1 1943 D 351746 CDS YP_001265364.1 148545262 5192242 3062..4165 1 NC_009512.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4165 recF 5192242 recF Pseudomonas putida F1 recombination protein F YP_001265364.1 3062 D 351746 CDS YP_001265365.1 148545263 5192243 4170..6590 1 NC_009512.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6590 gyrB 5192243 gyrB Pseudomonas putida F1 DNA gyrase subunit B YP_001265365.1 4170 D 351746 CDS YP_001265366.1 148545264 5193319 7427..8065 1 NC_009512.1 hypothetical protein 8065 5193319 Pput_0005 Pseudomonas putida F1 hypothetical protein YP_001265366.1 7427 D 351746 CDS YP_001265367.1 148545265 5193320 8046..10004 1 NC_009512.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 10004 5193320 Pput_0006 Pseudomonas putida F1 integrase catalytic subunit YP_001265367.1 8046 D 351746 CDS YP_001265368.1 148545266 5193321 10001..10960 1 NC_009512.1 SMART: AAA ATPase; ATPase AAA 10960 5193321 Pput_0007 Pseudomonas putida F1 ATPase AAA YP_001265368.1 10001 D 351746 CDS YP_001265369.1 148545267 5193463 11036..12952 1 NC_009512.1 hypothetical protein 12952 5193463 Pput_0008 Pseudomonas putida F1 hypothetical protein YP_001265369.1 11036 D 351746 CDS YP_001265370.1 148545268 5193464 13009..13368 1 NC_009512.1 hypothetical protein 13368 5193464 Pput_0009 Pseudomonas putida F1 hypothetical protein YP_001265370.1 13009 D 351746 CDS YP_001265371.1 148545269 5193465 13740..14072 1 NC_009512.1 hypothetical protein 14072 5193465 Pput_0010 Pseudomonas putida F1 hypothetical protein YP_001265371.1 13740 D 351746 CDS YP_001265372.1 148545270 5191125 complement(14170..14625) 1 NC_009512.1 PFAM: protein of unknown function DUF411; hypothetical protein 14625 5191125 Pput_0011 Pseudomonas putida F1 hypothetical protein YP_001265372.1 14170 R 351746 CDS YP_001265373.1 148545271 5191126 complement(14615..15394) 1 NC_009512.1 hypothetical protein 15394 5191126 Pput_0012 Pseudomonas putida F1 hypothetical protein YP_001265373.1 14615 R 351746 CDS YP_001265374.1 148545272 5191127 complement(15404..16519) 1 NC_009512.1 PFAM: copper resistance B precursor; copper resistance B 16519 5191127 Pput_0013 Pseudomonas putida F1 copper resistance B YP_001265374.1 15404 R 351746 CDS YP_001265375.1 148545273 5192384 complement(16509..16850) 1 NC_009512.1 hypothetical protein 16850 5192384 Pput_0014 Pseudomonas putida F1 hypothetical protein YP_001265375.1 16509 R 351746 CDS YP_001265376.1 148545274 5192385 complement(16847..18862) 1 NC_009512.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; CopA family copper resistance protein 18862 5192385 Pput_0015 Pseudomonas putida F1 CopA family copper resistance protein YP_001265376.1 16847 R 351746 CDS YP_001265377.1 148545275 5192316 complement(18988..19194) 1 NC_009512.1 hypothetical protein 19194 5192316 Pput_0016 Pseudomonas putida F1 hypothetical protein YP_001265377.1 18988 R 351746 CDS YP_001265378.1 148545276 5192317 19361..20038 1 NC_009512.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 20038 5192317 Pput_0017 Pseudomonas putida F1 two component heavy metal response transcriptional regulator YP_001265378.1 19361 D 351746 CDS YP_001265379.1 148545277 5192318 20038..21444 1 NC_009512.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 21444 5192318 Pput_0018 Pseudomonas putida F1 heavy metal sensor signal transduction histidine kinase YP_001265379.1 20038 D 351746 CDS YP_001265380.1 148545278 5193366 21481..21828 1 NC_009512.1 hypothetical protein 21828 5193366 Pput_0019 Pseudomonas putida F1 hypothetical protein YP_001265380.1 21481 D 351746 CDS YP_001265381.1 148545279 5193367 21915..23168 1 NC_009512.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 23168 5193367 Pput_0020 Pseudomonas putida F1 outer membrane efflux protein YP_001265381.1 21915 D 351746 CDS YP_001265382.1 148545280 5191809 23165..24631 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 24631 5191809 Pput_0021 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001265382.1 23165 D 351746 CDS YP_001265383.1 148545281 5191810 24628..27786 1 NC_009512.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 27786 5191810 Pput_0022 Pseudomonas putida F1 CzcA family heavy metal efflux protein YP_001265383.1 24628 D 351746 CDS YP_001265384.1 148545282 5191811 27783..28130 1 NC_009512.1 hypothetical protein 28130 5191811 Pput_0023 Pseudomonas putida F1 hypothetical protein YP_001265384.1 27783 D 351746 CDS YP_001265385.1 148545283 5191026 complement(28545..29204) 1 NC_009512.1 S-isoprenylcysteine methyltransferase-like protein 29204 5191026 Pput_0025 Pseudomonas putida F1 S-isoprenylcysteine methyltransferase-like protein YP_001265385.1 28545 R 351746 CDS YP_001265386.1 148545284 5193078 complement(29201..29476) 1 NC_009512.1 hypothetical protein 29476 5193078 Pput_0026 Pseudomonas putida F1 hypothetical protein YP_001265386.1 29201 R 351746 CDS YP_001265387.1 148545285 5193079 complement(29502..29957) 1 NC_009512.1 hypothetical protein 29957 5193079 Pput_0027 Pseudomonas putida F1 hypothetical protein YP_001265387.1 29502 R 351746 CDS YP_001265388.1 148545286 5195145 complement(30096..31118) 1 NC_009512.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 31118 5195145 Pput_0028 Pseudomonas putida F1 hypothetical protein YP_001265388.1 30096 R 351746 CDS YP_001265389.1 148545287 5195146 complement(31384..31584) 1 NC_009512.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 31584 5195146 Pput_0029 Pseudomonas putida F1 heavy metal transport/detoxification protein YP_001265389.1 31384 R 351746 CDS YP_001265390.1 148545288 5194841 complement(31922..34297) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase 34297 5194841 Pput_0030 Pseudomonas putida F1 copper-translocating P-type ATPase YP_001265390.1 31922 R 351746 CDS YP_001265391.1 148545289 5194842 complement(34482..34640) 1 NC_009512.1 hypothetical protein 34640 5194842 Pput_0031 Pseudomonas putida F1 hypothetical protein YP_001265391.1 34482 R 351746 CDS YP_001265392.1 148545290 5194215 35432..36466 1 NC_009512.1 hypothetical protein 36466 5194215 Pput_0033 Pseudomonas putida F1 hypothetical protein YP_001265392.1 35432 D 351746 CDS YP_001265393.1 148545291 5192251 complement(36650..37015) 1 NC_009512.1 hypothetical protein 37015 5192251 Pput_0034 Pseudomonas putida F1 hypothetical protein YP_001265393.1 36650 R 351746 CDS YP_001265394.1 148545292 5192252 37298..37546 1 NC_009512.1 hypothetical protein 37546 5192252 Pput_0035 Pseudomonas putida F1 hypothetical protein YP_001265394.1 37298 D 351746 CDS YP_001265395.1 148545293 5192888 37857..38780 1 NC_009512.1 hypothetical protein 38780 5192888 Pput_0036 Pseudomonas putida F1 hypothetical protein YP_001265395.1 37857 D 351746 CDS YP_001265396.1 148545294 5192889 38986..39210 1 NC_009512.1 hypothetical protein 39210 5192889 Pput_0037 Pseudomonas putida F1 hypothetical protein YP_001265396.1 38986 D 351746 CDS YP_001265397.1 148545295 5192890 39225..39431 1 NC_009512.1 hypothetical protein 39431 5192890 Pput_0038 Pseudomonas putida F1 hypothetical protein YP_001265397.1 39225 D 351746 CDS YP_001265398.1 148545296 5192893 complement(39826..41523) 1 NC_009512.1 PFAM: sulfatase; protein of unknown function DUF1705; hypothetical protein 41523 5192893 Pput_0039 Pseudomonas putida F1 hypothetical protein YP_001265398.1 39826 R 351746 CDS YP_001265399.1 148545297 5192894 42407..43312 1 NC_009512.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 43312 5192894 Pput_0040 Pseudomonas putida F1 cation diffusion facilitator family transporter YP_001265399.1 42407 D 351746 CDS YP_001265400.1 148545298 5194170 43470..43820 1 NC_009512.1 hypothetical protein 43820 5194170 Pput_0041 Pseudomonas putida F1 hypothetical protein YP_001265400.1 43470 D 351746 CDS YP_001265401.1 148545299 5194171 complement(43853..44179) 1 NC_009512.1 hypothetical protein 44179 5194171 Pput_0042 Pseudomonas putida F1 hypothetical protein YP_001265401.1 43853 R 351746 CDS YP_001265402.1 148545300 5194172 44869..45543 1 NC_009512.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 45543 5194172 Pput_0043 Pseudomonas putida F1 two component heavy metal response transcriptional regulator YP_001265402.1 44869 D 351746 CDS YP_001265403.1 148545301 5191676 45540..46958 1 NC_009512.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 46958 5191676 Pput_0044 Pseudomonas putida F1 heavy metal sensor signal transduction histidine kinase YP_001265403.1 45540 D 351746 CDS YP_001265404.1 148545302 5191677 complement(47016..47603) 1 NC_009512.1 hypothetical protein 47603 5191677 Pput_0045 Pseudomonas putida F1 hypothetical protein YP_001265404.1 47016 R 351746 CDS YP_001265405.1 148545303 5191678 47870..48091 1 NC_009512.1 hypothetical protein 48091 5191678 Pput_0046 Pseudomonas putida F1 hypothetical protein YP_001265405.1 47870 D 351746 CDS YP_001265406.1 148545304 5192807 complement(48174..49628) 1 NC_009512.1 PFAM: glycosyl transferase, family 39; glycosyl transferase family protein 49628 5192807 Pput_0047 Pseudomonas putida F1 glycosyl transferase family protein YP_001265406.1 48174 R 351746 CDS YP_001265407.1 148545305 5192808 complement(49622..50605) 1 NC_009512.1 PFAM: glycosyl transferase, family 2; ribonuclease III 50605 5192808 Pput_0048 Pseudomonas putida F1 ribonuclease III YP_001265407.1 49622 R 351746 CDS YP_001265408.1 148545306 5192028 complement(50571..50990) 1 NC_009512.1 PFAM: GtrA family protein; GtrA family protein 50990 5192028 Pput_0049 Pseudomonas putida F1 GtrA family protein YP_001265408.1 50571 R 351746 CDS YP_001265409.1 148545307 5192029 51248..52216 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 52216 5192029 Pput_0050 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265409.1 51248 D 351746 CDS YP_001265410.1 148545308 5192030 52427..53734 1 NC_009512.1 PFAM: phosphate-selective porin O and P; phosphate-selective porin O and P 53734 5192030 Pput_0051 Pseudomonas putida F1 phosphate-selective porin O and P YP_001265410.1 52427 D 351746 CDS YP_001265411.1 148545309 5191783 53754..53888 1 NC_009512.1 hypothetical protein 53888 5191783 Pput_0052 Pseudomonas putida F1 hypothetical protein YP_001265411.1 53754 D 351746 CDS YP_001265412.1 148545310 5191784 54033..55058 1 NC_009512.1 hypothetical protein 55058 5191784 Pput_0053 Pseudomonas putida F1 hypothetical protein YP_001265412.1 54033 D 351746 CDS YP_001265413.1 148545311 5191726 55186..55410 1 NC_009512.1 hypothetical protein 55410 5191726 Pput_0054 Pseudomonas putida F1 hypothetical protein YP_001265413.1 55186 D 351746 CDS YP_001265414.1 148545312 5191727 complement(55503..57500) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 57500 5191727 Pput_0055 Pseudomonas putida F1 heavy metal translocating P-type ATPase YP_001265414.1 55503 R 351746 CDS YP_001265415.1 148545313 5191728 complement(57703..58026) 1 NC_009512.1 hypothetical protein 58026 5191728 Pput_0056 Pseudomonas putida F1 hypothetical protein YP_001265415.1 57703 R 351746 CDS YP_001265416.1 148545314 5194381 complement(58189..61350) 1 NC_009512.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 61350 5194381 Pput_0057 Pseudomonas putida F1 CzcA family heavy metal efflux protein YP_001265416.1 58189 R 351746 CDS YP_001265417.1 148545315 5194382 complement(61375..62625) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 62625 5194382 Pput_0058 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001265417.1 61375 R 351746 CDS YP_001265418.1 148545316 5191174 complement(62694..63878) 1 NC_009512.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 63878 5191174 Pput_0059 Pseudomonas putida F1 outer membrane efflux protein YP_001265418.1 62694 R 351746 CDS YP_001265419.1 148545317 5191175 64369..65712 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 65712 5191175 Pput_0060 Pseudomonas putida F1 outer membrane porin YP_001265419.1 64369 D 351746 CDS YP_001265420.1 148545318 5191176 66201..66875 1 NC_009512.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 66875 5191176 Pput_0061 Pseudomonas putida F1 two component heavy metal response transcriptional regulator YP_001265420.1 66201 D 351746 CDS YP_001265421.1 148545319 5194864 66993..67316 1 NC_009512.1 hypothetical protein 67316 5194864 Pput_0062 Pseudomonas putida F1 hypothetical protein YP_001265421.1 66993 D 351746 CDS YP_001265422.1 148545320 5194865 complement(67418..68029) 1 NC_009512.1 hypothetical protein 68029 5194865 Pput_0063 Pseudomonas putida F1 hypothetical protein YP_001265422.1 67418 R 351746 CDS YP_001265423.1 148545321 5194866 complement(68135..69601) 1 NC_009512.1 hypothetical protein 69601 5194866 Pput_0064 Pseudomonas putida F1 hypothetical protein YP_001265423.1 68135 R 351746 CDS YP_001265424.1 148545322 5192552 complement(69614..70063) 1 NC_009512.1 hypothetical protein 70063 5192552 Pput_0065 Pseudomonas putida F1 hypothetical protein YP_001265424.1 69614 R 351746 CDS YP_001265425.1 148545323 5192553 complement(70754..71161) 1 NC_009512.1 hypothetical protein 71161 5192553 Pput_0066 Pseudomonas putida F1 hypothetical protein YP_001265425.1 70754 R 351746 CDS YP_001265426.1 148545324 5192582 complement(71293..72585) 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 72585 5192582 Pput_0067 Pseudomonas putida F1 sigma-54 dependent trancsriptional regulator YP_001265426.1 71293 R 351746 CDS YP_001265427.1 148545325 5192583 72808..73692 1 NC_009512.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 73692 5192583 Pput_0068 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001265427.1 72808 D 351746 CDS YP_001265428.1 148545326 5192584 73733..75001 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 75001 5192584 Pput_0069 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001265428.1 73733 D 351746 CDS YP_001265429.1 148545327 5191280 74998..75816 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 75816 5191280 Pput_0070 Pseudomonas putida F1 hypothetical protein YP_001265429.1 74998 D 351746 CDS YP_001265430.1 148545328 5191281 complement(75805..76692) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 76692 5191281 Pput_0071 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265430.1 75805 R 351746 CDS YP_001265431.1 148545329 5191855 76927..78573 1 NC_009512.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 78573 5191855 Pput_0072 Pseudomonas putida F1 glucose-methanol-choline oxidoreductase YP_001265431.1 76927 D 351746 CDS YP_001265432.1 148545330 5191856 78671..80290 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 80290 5191856 Pput_0073 Pseudomonas putida F1 general substrate transporter YP_001265432.1 78671 D 351746 CDS YP_001265433.1 148545331 5191857 complement(80465..81250) 1 NC_009512.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 81250 5191857 Pput_0074 Pseudomonas putida F1 phospholipid/glycerol acyltransferase YP_001265433.1 80465 R 351746 CDS YP_001265434.1 148545332 5191166 complement(81297..81824) 1 NC_009512.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 81824 5191166 Pput_0075 Pseudomonas putida F1 D,D-heptose 1,7-bisphosphate phosphatase YP_001265434.1 81297 R 351746 CDS YP_001265435.1 148545333 5191167 complement(81828..83882) 1 NC_009512.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 83882 glyS 5191167 glyS Pseudomonas putida F1 glycyl-tRNA synthetase subunit beta YP_001265435.1 81828 R 351746 CDS YP_001265436.1 148545334 5190902 complement(83879..84826) 1 NC_009512.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 84826 glyQ 5190902 glyQ Pseudomonas putida F1 glycyl-tRNA synthetase subunit alpha YP_001265436.1 83879 R 351746 CDS YP_001265437.1 148545335 5190903 84910..85461 1 NC_009512.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 85461 5190903 Pput_0078 Pseudomonas putida F1 DNA-3-methyladenine glycosylase I YP_001265437.1 84910 D 351746 CDS YP_001265438.1 148545336 5190904 85503..86390 1 NC_009512.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 86390 5190904 Pput_0079 Pseudomonas putida F1 lipid A biosynthesis lauroyl acyltransferase YP_001265438.1 85503 D 351746 CDS YP_001265439.1 148545337 5190348 complement(86488..86802) 1 NC_009512.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; hypothetical protein 86802 5190348 Pput_0080 Pseudomonas putida F1 hypothetical protein YP_001265439.1 86488 R 351746 CDS YP_001265440.1 148545338 5190349 complement(86814..88187) 1 NC_009512.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 88187 trkA 5190349 trkA Pseudomonas putida F1 potassium transporter peripheral membrane protein YP_001265440.1 86814 R 351746 CDS YP_001265441.1 148545339 5190350 complement(88211..89521) 1 NC_009512.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein 89521 5190350 Pput_0082 Pseudomonas putida F1 sun protein YP_001265441.1 88211 R 351746 CDS YP_001265442.1 148545340 5195176 complement(89518..90450) 1 NC_009512.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 90450 fmt 5195176 fmt Pseudomonas putida F1 methionyl-tRNA formyltransferase YP_001265442.1 89518 R 351746 CDS YP_001265443.1 148545341 5195177 complement(90511..91017) 1 NC_009512.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 91017 def 5195177 def Pseudomonas putida F1 peptide deformylase YP_001265443.1 90511 R 351746 CDS YP_001265444.1 148545342 5193907 91224..92321 1 NC_009512.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 92321 5193907 Pput_0085 Pseudomonas putida F1 DNA protecting protein DprA YP_001265444.1 91224 D 351746 CDS YP_001265445.1 148545343 5193908 92364..92921 1 NC_009512.1 PFAM: SUA5/yciO/yrdC, N-terminal domain; SUA5/yciO/yrdC domain-containing protein 92921 5193908 Pput_0086 Pseudomonas putida F1 SUA5/yciO/yrdC domain-containing protein YP_001265445.1 92364 D 351746 CDS YP_001265446.1 148545344 5193909 93301..93618 1 NC_009512.1 hypothetical protein 93618 5193909 Pput_0087 Pseudomonas putida F1 hypothetical protein YP_001265446.1 93301 D 351746 CDS YP_001265447.1 148545345 5193294 complement(93745..94722) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 94722 5193294 Pput_0088 Pseudomonas putida F1 alcohol dehydrogenase YP_001265447.1 93745 R 351746 CDS YP_001265448.1 148545346 5193295 94857..95768 1 NC_009512.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 95768 5193295 Pput_0089 Pseudomonas putida F1 coproporphyrinogen III oxidase YP_001265448.1 94857 D 351746 CDS YP_001265449.1 148545347 5191231 95794..96618 1 NC_009512.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 96618 aroE 5191231 aroE Pseudomonas putida F1 shikimate 5-dehydrogenase YP_001265449.1 95794 D 351746 CDS YP_001265450.1 148545348 5191232 complement(96748..98313) 1 NC_009512.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 98313 5191232 Pput_0091 Pseudomonas putida F1 sulfate transporter YP_001265450.1 96748 R 351746 CDS YP_001265451.1 148545349 5191233 complement(98458..99381) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 99381 5191233 Pput_0092 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001265451.1 98458 R 351746 CDS YP_001265452.1 148545350 5195170 complement(99396..100913) 1 NC_009512.1 PFAM: sulfatase; sulfatase 100913 5195170 Pput_0093 Pseudomonas putida F1 sulfatase YP_001265452.1 99396 R 351746 CDS YP_001265453.1 148545351 5195171 101022..101921 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 101921 5195171 Pput_0094 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265453.1 101022 D 351746 CDS YP_001265454.1 148545352 5193102 complement(102043..102660) 1 NC_009512.1 hypothetical protein 102660 5193102 Pput_0095 Pseudomonas putida F1 hypothetical protein YP_001265454.1 102043 R 351746 CDS YP_001265455.1 148545353 5193103 102713..103045 1 NC_009512.1 PFAM: Dopa 4,5-dioxygenase; DOPA 4,5-dioxygenase 103045 5193103 Pput_0096 Pseudomonas putida F1 DOPA 4,5-dioxygenase YP_001265455.1 102713 D 351746 CDS YP_001265456.1 148545354 5193104 complement(103166..103975) 1 NC_009512.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 103975 trpA 5193104 trpA Pseudomonas putida F1 tryptophan synthase subunit alpha YP_001265456.1 103166 R 351746 CDS YP_001265457.1 148545355 5193783 complement(103972..105189) 1 NC_009512.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 105189 5193783 Pput_0098 Pseudomonas putida F1 tryptophan synthase subunit beta YP_001265457.1 103972 R 351746 CDS YP_001265458.1 148545356 5193784 105300..106196 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 106196 5193784 Pput_0099 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265458.1 105300 D 351746 CDS YP_001265459.1 148545357 5190582 complement(106193..106516) 1 NC_009512.1 PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 106516 5190582 Pput_0100 Pseudomonas putida F1 hypothetical protein YP_001265459.1 106193 R 351746 CDS YP_001265460.1 148545358 5190583 106667..106882 1 NC_009512.1 PFAM: protein of unknown function DUF1458; hypothetical protein 106882 5190583 Pput_0101 Pseudomonas putida F1 hypothetical protein YP_001265460.1 106667 D 351746 CDS YP_001265461.1 148545359 5191468 106983..107204 1 NC_009512.1 PFAM: protein of unknown function DUF1161; hypothetical protein 107204 5191468 Pput_0102 Pseudomonas putida F1 hypothetical protein YP_001265461.1 106983 D 351746 CDS YP_001265462.1 148545360 5191469 complement(107277..108281) 1 NC_009512.1 PFAM: luciferase family protein; luciferase family protein 108281 5191469 Pput_0103 Pseudomonas putida F1 luciferase family protein YP_001265462.1 107277 R 351746 CDS YP_001265463.1 148545361 5191687 108434..108859 1 NC_009512.1 PFAM: OsmC family protein; OsmC family protein 108859 5191687 Pput_0104 Pseudomonas putida F1 OsmC family protein YP_001265463.1 108434 D 351746 CDS YP_001265464.1 148545362 5191688 108935..109168 1 NC_009512.1 PFAM: protein of unknown function DUF1161; hypothetical protein 109168 5191688 Pput_0105 Pseudomonas putida F1 hypothetical protein YP_001265464.1 108935 D 351746 CDS YP_001265465.1 148545363 5194303 complement(109204..109617) 1 NC_009512.1 hypothetical protein 109617 5194303 Pput_0106 Pseudomonas putida F1 hypothetical protein YP_001265465.1 109204 R 351746 CDS YP_001265466.1 148545364 5194304 complement(109673..110086) 1 NC_009512.1 hypothetical protein 110086 5194304 Pput_0107 Pseudomonas putida F1 hypothetical protein YP_001265466.1 109673 R 351746 CDS YP_001265467.1 148545365 5190375 110154..111245 1 NC_009512.1 hypothetical protein 111245 5190375 Pput_0108 Pseudomonas putida F1 hypothetical protein YP_001265467.1 110154 D 351746 CDS YP_001265468.1 148545366 5190671 complement(111351..112064) 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 112064 5190671 Pput_0109 Pseudomonas putida F1 HAD family hydrolase YP_001265468.1 111351 R 351746 CDS YP_001265469.1 148545367 5190672 complement(112061..112609) 1 NC_009512.1 carbonic anhydrase 112609 5190672 Pput_0110 Pseudomonas putida F1 carbonic anhydrase YP_001265469.1 112061 R 351746 CDS YP_001265470.1 148545368 5195319 112676..114763 1 NC_009512.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; oligopeptidase A 114763 5195319 Pput_0111 Pseudomonas putida F1 oligopeptidase A YP_001265470.1 112676 D 351746 CDS YP_001265471.1 148545369 5195320 114760..115041 1 NC_009512.1 nucleic acid binding protein 115041 5195320 Pput_0112 Pseudomonas putida F1 nucleic acid binding protein YP_001265471.1 114760 D 351746 CDS YP_001265472.1 148545370 5195216 115166..117160 1 NC_009512.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; peptidase M3A and M3B, thimet/oligopeptidase F 117160 5195216 Pput_0113 Pseudomonas putida F1 peptidase M3A and M3B, thimet/oligopeptidase F YP_001265472.1 115166 D 351746 CDS YP_001265473.1 148545371 5195217 117231..118289 1 NC_009512.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 118289 5195217 Pput_0114 Pseudomonas putida F1 radical SAM domain-containing protein YP_001265473.1 117231 D 351746 CDS YP_001265474.1 148545372 5191948 118593..119312 1 NC_009512.1 PFAM: carbonic anhydrase; carbonate dehydratase 119312 5191948 Pput_0115 Pseudomonas putida F1 carbonate dehydratase YP_001265474.1 118593 D 351746 CDS YP_001265475.1 148545373 5191949 119505..121037 1 NC_009512.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 121037 5191949 Pput_0116 Pseudomonas putida F1 sulfate transporter YP_001265475.1 119505 D 351746 CDS YP_001265476.1 148545374 5190667 complement(121015..121185) 1 NC_009512.1 hypothetical protein 121185 5190667 Pput_0117 Pseudomonas putida F1 hypothetical protein YP_001265476.1 121015 R 351746 CDS YP_001265477.1 148545375 5190668 complement(121297..121938) 1 NC_009512.1 hypothetical protein 121938 5190668 Pput_0118 Pseudomonas putida F1 hypothetical protein YP_001265477.1 121297 R 351746 CDS YP_001265478.1 148545376 5192062 122308..123435 1 NC_009512.1 TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; cytochrome c oxidase subunit II 123435 5192062 Pput_0119 Pseudomonas putida F1 cytochrome c oxidase subunit II YP_001265478.1 122308 D 351746 CDS YP_001265479.1 148545377 5192063 123479..125068 1 NC_009512.1 TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 125068 5192063 Pput_0120 Pseudomonas putida F1 cytochrome c oxidase subunit I YP_001265479.1 123479 D 351746 CDS YP_001265480.1 148545378 5193142 125078..125644 1 NC_009512.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 125644 5193142 Pput_0121 Pseudomonas putida F1 cytochrome C oxidase assembly protein YP_001265480.1 125078 D 351746 CDS YP_001265481.1 148545379 5193143 125661..126548 1 NC_009512.1 PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 126548 5193143 Pput_0122 Pseudomonas putida F1 cytochrome c oxidase subunit III YP_001265481.1 125661 D 351746 CDS YP_001265482.1 148545380 5193404 complement(126576..126779) 1 NC_009512.1 hypothetical protein 126779 5193404 Pput_0123 Pseudomonas putida F1 hypothetical protein YP_001265482.1 126576 R 351746 CDS YP_001265483.1 148545381 5193405 126807..127568 1 NC_009512.1 hypothetical protein 127568 5193405 Pput_0124 Pseudomonas putida F1 hypothetical protein YP_001265483.1 126807 D 351746 CDS YP_001265484.1 148545382 5194783 127537..128118 1 NC_009512.1 hypothetical protein 128118 5194783 Pput_0125 Pseudomonas putida F1 hypothetical protein YP_001265484.1 127537 D 351746 CDS YP_001265485.1 148545383 5194784 128128..129207 1 NC_009512.1 PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly 129207 5194784 Pput_0126 Pseudomonas putida F1 cytochrome oxidase assembly YP_001265485.1 128128 D 351746 CDS YP_001265486.1 148545384 5193181 129192..130085 1 NC_009512.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 130085 5193181 Pput_0127 Pseudomonas putida F1 protoheme IX farnesyltransferase YP_001265486.1 129192 D 351746 CDS YP_001265487.1 148545385 5193182 130082..130714 1 NC_009512.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 130714 5193182 Pput_0128 Pseudomonas putida F1 electron transport protein SCO1/SenC YP_001265487.1 130082 D 351746 CDS YP_001265488.1 148545386 5192212 complement(130844..131614) 1 NC_009512.1 PFAM: NLPA lipoprotein; NLPA lipoprotein 131614 5192212 Pput_0129 Pseudomonas putida F1 NLPA lipoprotein YP_001265488.1 130844 R 351746 CDS YP_001265489.1 148545387 5193398 complement(131679..132350) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 132350 5193398 Pput_0130 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265489.1 131679 R 351746 CDS YP_001265490.1 148545388 5193399 complement(132350..133357) 1 NC_009512.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 133357 metN 5193399 metN Pseudomonas putida F1 DL-methionine transporter ATP-binding subunit YP_001265490.1 132350 R 351746 CDS YP_001265491.1 148545389 5191928 133585..135720 1 NC_009512.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 135720 katE 5191928 katE Pseudomonas putida F1 hydroperoxidase II YP_001265491.1 133585 D 351746 CDS YP_001265492.1 148545390 5191929 complement(135781..136488) 1 NC_009512.1 hypothetical protein 136488 5191929 Pput_0133 Pseudomonas putida F1 hypothetical protein YP_001265492.1 135781 R 351746 CDS YP_001265493.1 148545391 5194081 complement(136615..137397) 1 NC_009512.1 PFAM: ABC-3 protein; ABC-3 protein 137397 5194081 Pput_0134 Pseudomonas putida F1 ABC-3 protein YP_001265493.1 136615 R 351746 CDS YP_001265494.1 148545392 5194082 complement(137390..138163) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 138163 5194082 Pput_0135 Pseudomonas putida F1 ABC transporter-like protein YP_001265494.1 137390 R 351746 CDS YP_001265495.1 148545393 5190968 complement(138160..138645) 1 NC_009512.1 ferric uptake regulator family protein 138645 5190968 Pput_0136 Pseudomonas putida F1 ferric uptake regulator family protein YP_001265495.1 138160 R 351746 CDS YP_001265496.1 148545394 5190969 138712..139620 1 NC_009512.1 PFAM: periplasmic solute binding protein; periplasmic solute binding protein 139620 5190969 Pput_0137 Pseudomonas putida F1 periplasmic solute binding protein YP_001265496.1 138712 D 351746 CDS YP_001265497.1 148545395 5191189 complement(139732..140682) 1 NC_009512.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 140682 5191189 Pput_0138 Pseudomonas putida F1 homoserine kinase YP_001265497.1 139732 R 351746 CDS YP_001265498.1 148545396 5191190 complement(140752..141039) 1 NC_009512.1 hypothetical protein 141039 5191190 Pput_0139 Pseudomonas putida F1 hypothetical protein YP_001265498.1 140752 R 351746 CDS YP_001265499.1 148545397 5191518 141115..143862 1 NC_009512.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 143862 5191518 Pput_0140 Pseudomonas putida F1 DNA polymerase I YP_001265499.1 141115 D 351746 CDS YP_001265500.1 148545398 5191519 complement(144265..144897) 1 NC_009512.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 144897 engB 5191519 engB Pseudomonas putida F1 ribosome biogenesis GTP-binding protein YsxC YP_001265500.1 144265 R 351746 CDS YP_001265501.1 148545399 5192267 145099..145401 1 NC_009512.1 cytochrome c5-like protein 145401 5192267 Pput_0142 Pseudomonas putida F1 cytochrome c5-like protein YP_001265501.1 145099 D 351746 CDS YP_001265502.1 148545400 5192268 145433..146050 1 NC_009512.1 PFAM: cytochrome c, class I; cytochrome c, class I 146050 5192268 Pput_0143 Pseudomonas putida F1 cytochrome c, class I YP_001265502.1 145433 D 351746 CDS YP_001265503.1 148545401 5194785 146202..146834 1 NC_009512.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 146834 5194785 Pput_0144 Pseudomonas putida F1 DSBA oxidoreductase YP_001265503.1 146202 D 351746 CDS YP_001265504.1 148545402 5194786 146847..147701 1 NC_009512.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 147701 5194786 Pput_0145 Pseudomonas putida F1 endonuclease/exonuclease/phosphatase YP_001265504.1 146847 D 351746 CDS YP_001265505.1 148545403 5194540 147729..149666 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 149666 5194540 Pput_0146 Pseudomonas putida F1 diguanylate cyclase YP_001265505.1 147729 D 351746 CDS YP_001265506.1 148545404 5194541 149740..150528 1 NC_009512.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 150528 5194541 Pput_0147 Pseudomonas putida F1 N-acetylmuramoyl-L-alanine amidase YP_001265506.1 149740 D 351746 CDS YP_001265507.1 148545405 5194994 150719..152326 1 NC_009512.1 PFAM: EAL domain protein; EAL domain-containing protein 152326 5194994 Pput_0148 Pseudomonas putida F1 EAL domain-containing protein YP_001265507.1 150719 D 351746 CDS YP_001265508.1 148545406 5194995 complement(152341..154122) 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 154122 5194995 Pput_0149 Pseudomonas putida F1 multi-sensor signal transduction histidine kinase YP_001265508.1 152341 R 351746 CDS YP_001265509.1 148545407 5195232 complement(154119..155465) 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 155465 5195232 Pput_0150 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001265509.1 154119 R 351746 CDS YP_001265510.1 148545408 5194828 155676..156497 1 NC_009512.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 156497 5194828 Pput_0151 Pseudomonas putida F1 transport-associated protein YP_001265510.1 155676 D 351746 CDS YP_001265511.1 148545409 5194829 156670..156960 1 NC_009512.1 hypothetical protein 156960 5194829 Pput_0152 Pseudomonas putida F1 hypothetical protein YP_001265511.1 156670 D 351746 CDS YP_001265512.1 148545410 5192104 157004..157165 1 NC_009512.1 PFAM: protein of unknown function DUF1328; hypothetical protein 157165 5192104 Pput_0153 Pseudomonas putida F1 hypothetical protein YP_001265512.1 157004 D 351746 CDS YP_001265513.1 148545411 5192105 157168..157638 1 NC_009512.1 PFAM: Inhibitor of vertebrate lysozyme; inhibitor of vertebrate lysozyme 157638 5192105 Pput_0154 Pseudomonas putida F1 inhibitor of vertebrate lysozyme YP_001265513.1 157168 D 351746 CDS YP_001265514.1 148545412 5192978 158382..159710 1 NC_009512.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 159710 gltP 5192978 gltP Pseudomonas putida F1 glutamate/aspartate:proton symporter YP_001265514.1 158382 D 351746 CDS YP_001265515.1 148545413 5192979 159858..161087 1 NC_009512.1 PFAM: nucleoside recognition domain protein; nucleoside recognition domain-containing protein 161087 5192979 Pput_0156 Pseudomonas putida F1 nucleoside recognition domain-containing protein YP_001265515.1 159858 D 351746 CDS YP_001265516.1 148545414 5192712 complement(161069..161704) 1 NC_009512.1 ABC transporter auxiliary component-like protein 161704 5192712 Pput_0157 Pseudomonas putida F1 ABC transporter auxiliary component-like protein YP_001265516.1 161069 R 351746 CDS YP_001265517.1 148545415 5192713 complement(161701..162639) 1 NC_009512.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 162639 5192713 Pput_0158 Pseudomonas putida F1 hypothetical protein YP_001265517.1 161701 R 351746 CDS YP_001265518.1 148545416 5192491 complement(162643..163434) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 163434 5192491 Pput_0159 Pseudomonas putida F1 ABC transporter-like protein YP_001265518.1 162643 R 351746 CDS YP_001265519.1 148545417 5192492 complement(163431..164564) 1 NC_009512.1 PFAM: protein of unknown function DUF140; hypothetical protein 164564 5192492 Pput_0160 Pseudomonas putida F1 hypothetical protein YP_001265519.1 163431 R 351746 CDS YP_001265520.1 148545418 5192359 complement(164766..165791) 1 NC_009512.1 hypothetical protein 165791 5192359 Pput_0161 Pseudomonas putida F1 hypothetical protein YP_001265520.1 164766 R 351746 CDS YP_001265521.1 148545419 5192360 complement(165885..167291) 1 NC_009512.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 167291 5192360 Pput_0162 Pseudomonas putida F1 peptidase M16 domain-containing protein YP_001265521.1 165885 R 351746 CDS YP_001265522.1 148545420 5191442 complement(167322..168980) 1 NC_009512.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 168980 5191442 Pput_0163 Pseudomonas putida F1 sodium-dependent inorganic phosphate (Pi) transporter YP_001265522.1 167322 R 351746 CDS YP_001265523.1 148545421 5191443 complement(169263..170033) 1 NC_009512.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 170033 5191443 Pput_0164 Pseudomonas putida F1 integral membrane protein TerC YP_001265523.1 169263 R 351746 CDS YP_001265524.1 148545422 5191749 complement(170103..171410) 1 NC_009512.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; CitMHS family citrate/H+ symporter 171410 5191749 Pput_0165 Pseudomonas putida F1 CitMHS family citrate/H+ symporter YP_001265524.1 170103 R 351746 CDS YP_001265525.1 148545423 5191750 171678..172079 1 NC_009512.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 172079 5191750 Pput_0166 Pseudomonas putida F1 glutathione-dependent formaldehyde-activating protein YP_001265525.1 171678 D 351746 CDS YP_001265526.1 148545424 5191946 complement(172118..174064) 1 NC_009512.1 hypothetical protein 174064 5191946 Pput_0167 Pseudomonas putida F1 hypothetical protein YP_001265526.1 172118 R 351746 CDS YP_001265527.1 148545425 5191947 complement(174070..174390) 1 NC_009512.1 TIGRFAM: conserverd hypothetical protein; hypothetical protein 174390 5191947 Pput_0168 Pseudomonas putida F1 hypothetical protein YP_001265527.1 174070 R 351746 CDS YP_001265528.1 148545426 5192392 complement(174427..174720) 1 NC_009512.1 TIGRFAM: conserverd hypothetical protein; hypothetical protein 174720 5192392 Pput_0169 Pseudomonas putida F1 hypothetical protein YP_001265528.1 174427 R 351746 CDS YP_001265529.1 148545427 5192393 complement(174810..175127) 1 NC_009512.1 TIGRFAM: conserverd hypothetical protein; hypothetical protein 175127 5192393 Pput_0170 Pseudomonas putida F1 hypothetical protein YP_001265529.1 174810 R 351746 CDS YP_001265530.1 148545428 5194374 complement(175439..175654) 1 NC_009512.1 hypothetical protein 175654 5194374 Pput_0171 Pseudomonas putida F1 hypothetical protein YP_001265530.1 175439 R 351746 CDS YP_001265531.1 148545429 5192255 complement(176088..177581) 1 NC_009512.1 PFAM: acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase 177581 5192255 Pput_0172 Pseudomonas putida F1 acetyl-CoA hydrolase YP_001265531.1 176088 R 351746 CDS YP_001265532.1 148545430 5192256 complement(177768..179204) 1 NC_009512.1 PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 179204 5192256 Pput_0173 Pseudomonas putida F1 NAD(P)(+) transhydrogenase YP_001265532.1 177768 R 351746 CDS YP_001265533.1 148545431 5194059 complement(179207..179521) 1 NC_009512.1 NAD/NADP transhydrogenase subunit alpha-like protein 179521 5194059 Pput_0174 Pseudomonas putida F1 NAD/NADP transhydrogenase subunit alpha-like protein YP_001265533.1 179207 R 351746 CDS YP_001265534.1 148545432 5194060 complement(179533..180654) 1 NC_009512.1 PFAM: alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase 180654 5194060 Pput_0175 Pseudomonas putida F1 NAD(P)(+) transhydrogenase YP_001265534.1 179533 R 351746 CDS YP_001265535.1 148545433 5193725 complement(181074..181991) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 181991 5193725 Pput_0176 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265535.1 181074 R 351746 CDS YP_001265536.1 148545434 5193726 182152..183333 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 183333 5193726 Pput_0177 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001265536.1 182152 D 351746 CDS YP_001265537.1 148545435 5193432 183347..184567 1 NC_009512.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 184567 5193432 Pput_0178 Pseudomonas putida F1 formyl-CoA transferase YP_001265537.1 183347 D 351746 CDS YP_001265538.1 148545436 5194240 complement(190384..192870) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 192870 5194240 Pput_0179 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001265538.1 190384 R 351746 CDS YP_001265539.1 148545437 5191940 complement(192964..193920) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 193920 5191940 Pput_0180 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001265539.1 192964 R 351746 CDS YP_001265540.1 148545438 5191941 complement(193925..194446) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 194446 5191941 Pput_0181 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001265540.1 193925 R 351746 CDS YP_001265541.1 148545439 5193252 complement(194535..195224) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 195224 5193252 Pput_0182 Pseudomonas putida F1 GntR family transcriptional regulator YP_001265541.1 194535 R 351746 CDS YP_001265542.1 148545440 5193253 195428..196189 1 NC_009512.1 hypothetical protein 196189 5193253 Pput_0183 Pseudomonas putida F1 hypothetical protein YP_001265542.1 195428 D 351746 CDS YP_001265543.1 148545441 5192186 196200..198146 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; diguanylate cyclase/phosphodiesterase 198146 5192186 Pput_0184 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001265543.1 196200 D 351746 CDS YP_001265544.1 148545442 5192187 complement(198302..199678) 1 NC_009512.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 199678 5192187 Pput_0185 Pseudomonas putida F1 HlyD family type I secretion membrane fusion protein YP_001265544.1 198302 R 351746 CDS YP_001265545.1 148545443 5191608 complement(199668..201824) 1 NC_009512.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 201824 5191608 Pput_0186 Pseudomonas putida F1 ABC transporter-like protein YP_001265545.1 199668 R 351746 CDS YP_001265546.1 148545444 5191609 202214..202531 1 NC_009512.1 hypothetical protein 202531 5191609 Pput_0187 Pseudomonas putida F1 hypothetical protein YP_001265546.1 202214 D 351746 CDS YP_001265547.1 148545445 5194475 202824..229916 1 NC_009512.1 TIGRFAM: conserved repeat domain; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; Two component regulator propeller; SMART: Pyrrolo-quinoline quinone; hypothetical protein 229916 5194475 Pput_0188 Pseudomonas putida F1 hypothetical protein YP_001265547.1 202824 D 351746 CDS YP_001265548.1 148545446 5194476 230062..230403 1 NC_009512.1 hypothetical protein 230403 5194476 Pput_0189 Pseudomonas putida F1 hypothetical protein YP_001265548.1 230062 D 351746 CDS YP_001265549.1 148545447 5193008 230602..231501 1 NC_009512.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase 231501 5193008 Pput_0190 Pseudomonas putida F1 taurine dioxygenase YP_001265549.1 230602 D 351746 CDS YP_001265550.1 148545448 5193009 231519..232538 1 NC_009512.1 ABC transporter substrate-binding protein 232538 5193009 Pput_0191 Pseudomonas putida F1 ABC transporter substrate-binding protein YP_001265550.1 231519 D 351746 CDS YP_001265551.1 148545449 5191116 232545..233408 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 233408 5191116 Pput_0192 Pseudomonas putida F1 ABC transporter-like protein YP_001265551.1 232545 D 351746 CDS YP_001265552.1 148545450 5191901 233423..234286 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 234286 5191901 Pput_0193 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265552.1 233423 D 351746 CDS YP_001265553.1 148545451 5191902 complement(234404..235009) 1 NC_009512.1 hypothetical protein 235009 5191902 Pput_0194 Pseudomonas putida F1 hypothetical protein YP_001265553.1 234404 R 351746 CDS YP_001265554.1 148545452 5191108 235172..235966 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 235966 5191108 Pput_0195 Pseudomonas putida F1 Sel1 domain-containing protein YP_001265554.1 235172 D 351746 CDS YP_001265555.1 148545453 5191109 236174..236626 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 236626 5191109 Pput_0196 Pseudomonas putida F1 MarR family transcriptional regulator YP_001265555.1 236174 D 351746 CDS YP_001265556.1 148545454 5192746 236623..238710 1 NC_009512.1 PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein 238710 5192746 Pput_0197 Pseudomonas putida F1 fusaric acid resistance protein YP_001265556.1 236623 D 351746 CDS YP_001265557.1 148545455 5192747 238707..238919 1 NC_009512.1 PFAM: protein of unknown function DUF1656; hypothetical protein 238919 5192747 Pput_0198 Pseudomonas putida F1 hypothetical protein YP_001265557.1 238707 D 351746 CDS YP_001265558.1 148545456 5192742 238916..239791 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 239791 5192742 Pput_0199 Pseudomonas putida F1 secretion protein HlyD family protein YP_001265558.1 238916 D 351746 CDS YP_001265559.1 148545457 5192743 239788..241206 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 241206 5192743 Pput_0200 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001265559.1 239788 D 351746 CDS YP_001265560.1 148545458 5193383 241307..242260 1 NC_009512.1 hypothetical protein 242260 5193383 Pput_0201 Pseudomonas putida F1 hypothetical protein YP_001265560.1 241307 D 351746 CDS YP_001265561.1 148545459 5193384 242341..244284 1 NC_009512.1 PFAM: cytochrome c, class I; iron permease FTR1; cytochrome c, class I 244284 5193384 Pput_0202 Pseudomonas putida F1 cytochrome c, class I YP_001265561.1 242341 D 351746 CDS YP_001265562.1 148545460 5193430 complement(244347..244592) 1 NC_009512.1 hypothetical protein 244592 5193430 Pput_0203 Pseudomonas putida F1 hypothetical protein YP_001265562.1 244347 R 351746 CDS YP_001265563.1 148545461 5193431 complement(244662..244964) 1 NC_009512.1 hypothetical protein 244964 5193431 Pput_0204 Pseudomonas putida F1 hypothetical protein YP_001265563.1 244662 R 351746 CDS YP_001265564.1 148545462 5192832 245112..245774 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 245774 5192832 Pput_0205 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001265564.1 245112 D 351746 CDS YP_001265565.1 148545463 5192833 complement(245881..247380) 1 NC_009512.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 247380 5192833 Pput_0206 Pseudomonas putida F1 argininosuccinate lyase YP_001265565.1 245881 R 351746 CDS YP_001265566.1 148545464 5193239 247573..248316 1 NC_009512.1 PFAM: response regulator receiver; LytTr DNA-binding region; LytTR family two component transcriptional regulator 248316 5193239 Pput_0207 Pseudomonas putida F1 LytTR family two component transcriptional regulator YP_001265566.1 247573 D 351746 CDS YP_001265567.1 148545465 5193240 248435..249376 1 NC_009512.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 249376 hemC 5193240 hemC Pseudomonas putida F1 porphobilinogen deaminase YP_001265567.1 248435 D 351746 CDS YP_001265568.1 148545466 5193015 249373..250140 1 NC_009512.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 250140 5193015 Pput_0209 Pseudomonas putida F1 uroporphyrinogen-III synthase YP_001265568.1 249373 D 351746 CDS YP_001265569.1 148545467 5193016 250186..251286 1 NC_009512.1 PFAM: protein of unknown function DUF513, hemX; hypothetical protein 251286 5193016 Pput_0210 Pseudomonas putida F1 hypothetical protein YP_001265569.1 250186 D 351746 CDS YP_001265570.1 148545468 5192175 251283..252521 1 NC_009512.1 PFAM: HemY domain protein; HemY domain-containing protein 252521 5192175 Pput_0211 Pseudomonas putida F1 HemY domain-containing protein YP_001265570.1 251283 D 351746 CDS YP_001265571.1 148545469 5192176 252744..253250 1 NC_009512.1 PFAM: Disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 253250 5192176 Pput_0212 Pseudomonas putida F1 disulfide bond formation protein DsbB YP_001265571.1 252744 D 351746 CDS YP_001265572.1 148545470 5193019 253482..253952 1 NC_009512.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 253952 5193019 Pput_0213 Pseudomonas putida F1 anti-RNA polymerase sigma 70 factor YP_001265572.1 253482 D 351746 CDS YP_001265573.1 148545471 5194773 complement(253961..254599) 1 NC_009512.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 254599 5194773 Pput_0214 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001265573.1 253961 R 351746 CDS YP_001265574.1 148545472 5194774 254778..255800 1 NC_009512.1 alginate regulatory protein AlgP 255800 5194774 Pput_0215 Pseudomonas putida F1 alginate regulatory protein AlgP YP_001265574.1 254778 D 351746 CDS YP_001265575.1 148545473 5191594 complement(255779..256258) 1 NC_009512.1 hypothetical protein 256258 5191594 Pput_0216 Pseudomonas putida F1 hypothetical protein YP_001265575.1 255779 R 351746 CDS YP_001265576.1 148545474 5191595 256309..258219 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 258219 5191595 Pput_0217 Pseudomonas putida F1 ABC transporter-like protein YP_001265576.1 256309 D 351746 CDS YP_001265577.1 148545475 5192122 258219..258806 1 NC_009512.1 hypothetical protein 258806 5192122 Pput_0218 Pseudomonas putida F1 hypothetical protein YP_001265577.1 258219 D 351746 CDS YP_001265578.1 148545476 5192123 259005..259637 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 259637 5192123 Pput_0219 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001265578.1 259005 D 351746 CDS YP_001265579.1 148545477 5194127 complement(259683..260444) 1 NC_009512.1 PFAM: band 7 protein; hypothetical protein 260444 5194127 Pput_0220 Pseudomonas putida F1 hypothetical protein YP_001265579.1 259683 R 351746 CDS YP_001265580.1 148545478 5194128 complement(260441..261787) 1 NC_009512.1 PFAM: protein of unknown function DUF107; hypothetical protein 261787 5194128 Pput_0221 Pseudomonas putida F1 hypothetical protein YP_001265580.1 260441 R 351746 CDS YP_001265581.1 148545479 5194953 261886..262344 1 NC_009512.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 262344 5194953 Pput_0222 Pseudomonas putida F1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001265581.1 261886 D 351746 CDS YP_001265582.1 148545480 5194954 262406..262648 1 NC_009512.1 hypothetical protein 262648 5194954 Pput_0223 Pseudomonas putida F1 hypothetical protein YP_001265582.1 262406 D 351746 CDS YP_001265583.1 148545481 5193049 262718..263356 1 NC_009512.1 hypothetical protein 263356 5193049 Pput_0224 Pseudomonas putida F1 hypothetical protein YP_001265583.1 262718 D 351746 CDS YP_001265584.1 148545482 5193050 complement(263363..263800) 1 NC_009512.1 PFAM: CBS domain containing protein; hypothetical protein 263800 5193050 Pput_0225 Pseudomonas putida F1 hypothetical protein YP_001265584.1 263363 R 351746 CDS YP_001265585.1 148545483 5194837 complement(263971..265728) 1 NC_009512.1 TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein 265728 5194837 Pput_0226 Pseudomonas putida F1 hypothetical protein YP_001265585.1 263971 R 351746 CDS YP_001265586.1 148545484 5195128 266409..267851 1 NC_009512.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 267851 gabD 5195128 gabD Pseudomonas putida F1 succinate-semialdehyde dehydrogenase I YP_001265586.1 266409 D 351746 CDS YP_001265587.1 148545485 5195326 268034..269311 1 NC_009512.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 269311 5195326 Pput_0229 Pseudomonas putida F1 4-aminobutyrate aminotransferase YP_001265587.1 268034 D 351746 CDS YP_001265588.1 148545486 5195327 269449..270708 1 NC_009512.1 PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; putative signal transduction protein 270708 5195327 Pput_0230 Pseudomonas putida F1 putative signal transduction protein YP_001265588.1 269449 D 351746 CDS YP_001265589.1 148545487 5194706 complement(270811..271839) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 271839 5194706 Pput_0231 Pseudomonas putida F1 PAS/PAC sensor-containing diguanylate cyclase YP_001265589.1 270811 R 351746 CDS YP_001265590.1 148545488 5194707 complement(271939..273123) 1 NC_009512.1 PFAM: fatty acid desaturase; fatty acid desaturase 273123 5194707 Pput_0232 Pseudomonas putida F1 fatty acid desaturase YP_001265590.1 271939 R 351746 CDS YP_001265591.1 148545489 5194198 273270..275165 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 275165 5194198 Pput_0233 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001265591.1 273270 D 351746 CDS YP_001265592.1 148545490 5194199 complement(275193..275837) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 275837 5194199 Pput_0234 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265592.1 275193 R 351746 CDS YP_001265593.1 148545491 5193872 complement(275827..276936) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 276936 5193872 Pput_0235 Pseudomonas putida F1 ABC transporter-like protein YP_001265593.1 275827 R 351746 CDS YP_001265594.1 148545492 5190552 complement(276938..277738) 1 NC_009512.1 PFAM: NLPA lipoprotein; NLPA lipoprotein 277738 5190552 Pput_0236 Pseudomonas putida F1 NLPA lipoprotein YP_001265594.1 276938 R 351746 CDS YP_001265595.1 148545493 5190553 complement(277731..279116) 1 NC_009512.1 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 279116 5190553 Pput_0237 Pseudomonas putida F1 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_001265595.1 277731 R 351746 CDS YP_001265596.1 148545494 5191063 complement(279116..280297) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 280297 5191063 Pput_0238 Pseudomonas putida F1 type 2 acyl-CoA dehydrogenase YP_001265596.1 279116 R 351746 CDS YP_001265597.1 148545495 5191064 complement(280439..281680) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 281680 5191064 Pput_0239 Pseudomonas putida F1 type 2 acyl-CoA dehydrogenase YP_001265597.1 280439 R 351746 CDS YP_001265598.1 148545496 5192215 complement(281998..282756) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; putative amino-acid ABC transporter ATP-binding protein YecC 282756 5192215 Pput_0240 Pseudomonas putida F1 putative amino-acid ABC transporter ATP-binding protein YecC YP_001265598.1 281998 R 351746 CDS YP_001265599.1 148545497 5192216 complement(282759..283427) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 283427 5192216 Pput_0241 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001265599.1 282759 R 351746 CDS YP_001265600.1 148545498 5193024 complement(283424..284218) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; cystine transporter subunit 284218 5193024 Pput_0242 Pseudomonas putida F1 cystine transporter subunit YP_001265600.1 283424 R 351746 CDS YP_001265601.1 148545499 5193025 284526..285458 1 NC_009512.1 Serine O-acetyltransferase 285458 5193025 Pput_0243 Pseudomonas putida F1 Serine O-acetyltransferase YP_001265601.1 284526 D 351746 CDS YP_001265602.1 148545500 5193315 285729..287732 1 NC_009512.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 287732 5193315 Pput_0244 Pseudomonas putida F1 choline/carnitine/betaine transporter YP_001265602.1 285729 D 351746 CDS YP_001265603.1 148545501 5193316 complement(287856..288731) 1 NC_009512.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 288731 tauD 5193316 tauD Pseudomonas putida F1 taurine dioxygenase YP_001265603.1 287856 R 351746 CDS YP_001265604.1 148545502 5194389 complement(288738..289577) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 289577 5194389 Pput_0246 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265604.1 288738 R 351746 CDS YP_001265605.1 148545503 5194390 complement(289574..290362) 1 NC_009512.1 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 290362 tauB 5194390 tauB Pseudomonas putida F1 taurine transporter ATP-binding subunit YP_001265605.1 289574 R 351746 CDS YP_001265606.1 148545504 5193554 complement(290376..291347) 1 NC_009512.1 TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like; SMART: extracellular solute-binding protein, family 3; taurine ABC transporter periplasmic binding protein 291347 5193554 Pput_0248 Pseudomonas putida F1 taurine ABC transporter periplasmic binding protein YP_001265606.1 290376 R 351746 CDS YP_001265607.1 148545505 5193555 291866..293206 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 293206 5193555 Pput_0249 Pseudomonas putida F1 outer membrane porin YP_001265607.1 291866 D 351746 CDS YP_001265608.1 148545506 5190631 293372..294010 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxidase 294010 5190631 Pput_0250 Pseudomonas putida F1 peroxidase YP_001265608.1 293372 D 351746 CDS YP_001265609.1 148545507 5190632 294229..294822 1 NC_009512.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H-dependent FMN reductase 294822 5190632 Pput_0251 Pseudomonas putida F1 NAD(P)H-dependent FMN reductase YP_001265609.1 294229 D 351746 CDS YP_001265610.1 148545508 5192671 294908..295873 1 NC_009512.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 295873 5192671 Pput_0252 Pseudomonas putida F1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001265610.1 294908 D 351746 CDS YP_001265611.1 148545509 5192672 295933..297081 1 NC_009512.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 297081 5192672 Pput_0253 Pseudomonas putida F1 alkanesulfonate monooxygenase YP_001265611.1 295933 D 351746 CDS YP_001265612.1 148545510 5191602 297092..297889 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 297889 5191602 Pput_0254 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265612.1 297092 D 351746 CDS YP_001265613.1 148545511 5191603 297886..298698 1 NC_009512.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 298698 ssuB 5191603 ssuB Pseudomonas putida F1 aliphatic sulfonates transport ATP-binding subunit YP_001265613.1 297886 D 351746 CDS YP_001265614.1 148545512 5190689 298726..298941 1 NC_009512.1 PFAM: TOBE domain protein; TOBE domain-containing protein 298941 5190689 Pput_0256 Pseudomonas putida F1 TOBE domain-containing protein YP_001265614.1 298726 D 351746 CDS YP_001265615.1 148545513 5191952 complement(299084..299716) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 299716 5191952 Pput_0257 Pseudomonas putida F1 TetR family transcriptional regulator YP_001265615.1 299084 R 351746 CDS YP_001265616.1 148545514 5191953 complement(299716..301308) 1 NC_009512.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 301308 5191953 Pput_0258 Pseudomonas putida F1 glutamate--cysteine ligase YP_001265616.1 299716 R 351746 CDS YP_001265617.1 148545515 5191381 complement(301447..301830) 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 301830 5191381 Pput_0259 Pseudomonas putida F1 thioesterase superfamily protein YP_001265617.1 301447 R 351746 CDS YP_001265618.1 148545516 5191382 complement(301830..304154) 1 NC_009512.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; RNA-binding S1 domain-containing protein 304154 5191382 Pput_0260 Pseudomonas putida F1 RNA-binding S1 domain-containing protein YP_001265618.1 301830 R 351746 CDS YP_001265619.1 148545517 5191434 304372..305112 1 NC_009512.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 305112 ompR 5191434 ompR Pseudomonas putida F1 osmolarity response regulator YP_001265619.1 304372 D 351746 CDS YP_001265620.1 148545518 5191435 305126..306439 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 306439 5191435 Pput_0262 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001265620.1 305126 D 351746 CDS YP_001265621.1 148545519 5193639 complement(306537..307442) 1 NC_009512.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; alpha-L-glutamate ligase 307442 5193639 Pput_0263 Pseudomonas putida F1 alpha-L-glutamate ligase YP_001265621.1 306537 R 351746 CDS YP_001265622.1 148545520 5193640 complement(307439..307978) 1 NC_009512.1 PFAM: protein of unknown function DUF785; hypothetical protein 307978 5193640 Pput_0264 Pseudomonas putida F1 hypothetical protein YP_001265622.1 307439 R 351746 CDS YP_001265623.1 148545521 5190213 308031..308432 1 NC_009512.1 PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 308432 5190213 Pput_0265 Pseudomonas putida F1 RNA-binding S4 domain-containing protein YP_001265623.1 308031 D 351746 CDS YP_001265624.1 148545522 5190214 complement(308460..309254) 1 NC_009512.1 PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like protein 309254 5190214 Pput_0266 Pseudomonas putida F1 PA-phosphatase-like protein YP_001265624.1 308460 R 351746 CDS YP_001265625.1 148545523 5195565 309375..310274 1 NC_009512.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 310274 hslO 5195565 hslO Pseudomonas putida F1 Hsp33-like chaperonin YP_001265625.1 309375 D 351746 CDS YP_001265626.1 148545524 5195566 310454..311995 1 NC_009512.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 311995 5195566 Pput_0268 Pseudomonas putida F1 phosphoenolpyruvate carboxykinase YP_001265626.1 310454 D 351746 CDS YP_001265627.1 148545525 5192375 312277..312717 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 312717 5192375 Pput_0269 Pseudomonas putida F1 thioesterase superfamily protein YP_001265627.1 312277 D 351746 CDS YP_001265628.1 148545526 5192376 complement(312774..313256) 1 NC_009512.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 313256 5192376 Pput_0270 Pseudomonas putida F1 17 kDa surface antigen YP_001265628.1 312774 R 351746 CDS YP_001265629.1 148545527 5193878 complement(313453..315798) 1 NC_009512.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 315798 5193878 Pput_0271 Pseudomonas putida F1 oxidoreductase alpha (molybdopterin) subunit YP_001265629.1 313453 R 351746 CDS YP_001265630.1 148545528 5193879 complement(315804..316634) 1 NC_009512.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD 316634 5193879 Pput_0272 Pseudomonas putida F1 formate dehydrogenase family accessory protein FdhD YP_001265630.1 315804 R 351746 CDS YP_001265631.1 148545529 5190294 316810..317250 1 NC_009512.1 PFAM: Peptidoglycan-binding LysM; transport-associated; LysM domain/BON superfamily protein 317250 5190294 Pput_0273 Pseudomonas putida F1 LysM domain/BON superfamily protein YP_001265631.1 316810 D 351746 CDS YP_001265632.1 148545530 5190295 complement(317362..318024) 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 318024 5190295 Pput_0274 Pseudomonas putida F1 HAD family hydrolase YP_001265632.1 317362 R 351746 CDS YP_001265633.1 148545531 5192813 318089..318655 1 NC_009512.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 318655 nudE 5192813 nudE Pseudomonas putida F1 ADP-ribose diphosphatase NudE YP_001265633.1 318089 D 351746 CDS YP_001265634.1 148545532 5192814 318652..319470 1 NC_009512.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase 319470 5192814 Pput_0276 Pseudomonas putida F1 3'(2'),5'-bisphosphate nucleotidase YP_001265634.1 318652 D 351746 CDS YP_001265635.1 148545533 5193109 complement(319617..320072) 1 NC_009512.1 TIGRFAM: thioesterase domain, putative; thioesterase domain-containing protein 320072 5193109 Pput_0277 Pseudomonas putida F1 thioesterase domain-containing protein YP_001265635.1 319617 R 351746 CDS YP_001265636.1 148545534 5191218 complement(320072..321478) 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 321478 5191218 Pput_0278 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001265636.1 320072 R 351746 CDS YP_001265637.1 148545535 5191219 complement(321475..323289) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 323289 5191219 Pput_0279 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001265637.1 321475 R 351746 CDS YP_001265638.1 148545536 5191183 complement(323332..323877) 1 NC_009512.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 323877 5191183 Pput_0280 Pseudomonas putida F1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001265638.1 323332 R 351746 CDS YP_001265639.1 148545537 5191184 324156..325262 1 NC_009512.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 325262 5191184 Pput_0281 Pseudomonas putida F1 agmatine deiminase YP_001265639.1 324156 D 351746 CDS YP_001265640.1 148545538 5190458 325457..325654 1 NC_009512.1 hypothetical protein 325654 5190458 Pput_0282 Pseudomonas putida F1 hypothetical protein YP_001265640.1 325457 D 351746 CDS YP_001265641.1 148545539 5190459 complement(325721..327790) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 327790 5190459 Pput_0283 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001265641.1 325721 R 351746 CDS YP_001265642.1 148545540 5191888 328265..329584 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 329584 5191888 Pput_0284 Pseudomonas putida F1 outer membrane porin YP_001265642.1 328265 D 351746 CDS YP_001265643.1 148545541 5191889 complement(329735..331405) 1 NC_009512.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase 331405 5191889 Pput_0285 Pseudomonas putida F1 glutamate synthase YP_001265643.1 329735 R 351746 CDS YP_001265644.1 148545542 5190826 complement(331651..333018) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 333018 5190826 Pput_0286 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001265644.1 331651 R 351746 CDS YP_001265645.1 148545543 5190827 complement(333020..333739) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 333739 5190827 Pput_0287 Pseudomonas putida F1 two component transcriptional regulator YP_001265645.1 333020 R 351746 CDS YP_001265646.1 148545544 5193807 333880..336177 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 336177 5193807 Pput_0288 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001265646.1 333880 D 351746 CDS YP_001265647.1 148545545 5193808 complement(336328..336534) 1 NC_009512.1 hypothetical protein 336534 5193808 Pput_0289 Pseudomonas putida F1 hypothetical protein YP_001265647.1 336328 R 351746 CDS YP_001265648.1 148545546 5191216 336593..337069 1 NC_009512.1 hypothetical protein 337069 5191216 Pput_0290 Pseudomonas putida F1 hypothetical protein YP_001265648.1 336593 D 351746 CDS YP_001265649.1 148545547 5191217 337111..337584 1 NC_009512.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 337584 5191217 Pput_0291 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001265649.1 337111 D 351746 CDS YP_001265650.1 148545548 5194839 338005..338220 1 NC_009512.1 PFAM: protein of unknown function DUF891; hypothetical protein 338220 5194839 Pput_0292 Pseudomonas putida F1 hypothetical protein YP_001265650.1 338005 D 351746 CDS YP_001265651.1 148545549 5194840 complement(338217..338540) 1 NC_009512.1 hypothetical protein 338540 5194840 Pput_0293 Pseudomonas putida F1 hypothetical protein YP_001265651.1 338217 R 351746 CDS YP_001265652.1 148545550 5193904 complement(339008..339256) 1 NC_009512.1 hypothetical protein 339256 5193904 Pput_0294 Pseudomonas putida F1 hypothetical protein YP_001265652.1 339008 R 351746 CDS YP_001265653.1 148545551 5194197 339782..340072 1 NC_009512.1 hypothetical protein 340072 5194197 Pput_0295 Pseudomonas putida F1 hypothetical protein YP_001265653.1 339782 D 351746 CDS YP_001265654.1 148545552 5195296 complement(340427..341632) 1 NC_009512.1 hypothetical protein 341632 5195296 Pput_0297 Pseudomonas putida F1 hypothetical protein YP_001265654.1 340427 R 351746 CDS YP_001265655.1 148545553 5191873 complement(341744..342433) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 342433 5191873 Pput_0298 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001265655.1 341744 R 351746 CDS YP_001265656.1 148545554 5190219 complement(342433..343125) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 343125 5190219 Pput_0299 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001265656.1 342433 R 351746 CDS YP_001265657.1 148545555 5191244 complement(343180..343932) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 343932 5191244 Pput_0300 Pseudomonas putida F1 extracellular solute-binding protein YP_001265657.1 343180 R 351746 CDS YP_001265658.1 148545556 5191245 complement(343944..344717) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 344717 5191245 Pput_0301 Pseudomonas putida F1 ABC transporter-like protein YP_001265658.1 343944 R 351746 CDS YP_001265659.1 148545557 5190625 345349..346734 1 NC_009512.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; GABA permease 346734 5190625 Pput_0302 Pseudomonas putida F1 GABA permease YP_001265659.1 345349 D 351746 CDS YP_001265660.1 148545558 5190626 complement(346938..347381) 1 NC_009512.1 hypothetical protein 347381 5190626 Pput_0303 Pseudomonas putida F1 hypothetical protein YP_001265660.1 346938 R 351746 CDS YP_001265661.1 148545559 5191385 complement(347569..348549) 1 NC_009512.1 PFAM: protein of unknown function DUF344; hypothetical protein 348549 5191385 Pput_0304 Pseudomonas putida F1 hypothetical protein YP_001265661.1 347569 R 351746 CDS YP_001265662.1 148545560 5195297 complement(348886..349158) 1 NC_009512.1 PFAM: Fe(II) trafficking protein YggX; hypothetical protein 349158 5195297 Pput_0305 Pseudomonas putida F1 hypothetical protein YP_001265662.1 348886 R 351746 CDS YP_001265663.1 148545561 5191422 complement(349155..350222) 1 NC_009512.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase 350222 5191422 Pput_0306 Pseudomonas putida F1 A/G-specific adenine glycosylase YP_001265663.1 349155 R 351746 CDS YP_001265664.1 148545562 5191423 complement(350219..352465) 1 NC_009512.1 PFAM: AsmA family protein; AsmA family protein 352465 5191423 Pput_0307 Pseudomonas putida F1 AsmA family protein YP_001265664.1 350219 R 351746 CDS YP_001265665.1 148545563 5191781 352733..354394 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 354394 5191781 Pput_0308 Pseudomonas putida F1 major facilitator superfamily transporter YP_001265665.1 352733 D 351746 CDS YP_001265666.1 148545564 5191782 354625..355257 1 NC_009512.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 355257 hisB 5191782 hisB Pseudomonas putida F1 imidazoleglycerol-phosphate dehydratase YP_001265666.1 354625 D 351746 CDS YP_001265667.1 148545565 5193964 355258..355896 1 NC_009512.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 355896 hisH 5193964 hisH Pseudomonas putida F1 imidazole glycerol phosphate synthase subunit HisH YP_001265667.1 355258 D 351746 CDS YP_001265668.1 148545566 5193965 355897..356157 1 NC_009512.1 hypothetical protein 356157 5193965 Pput_0311 Pseudomonas putida F1 hypothetical protein YP_001265668.1 355897 D 351746 CDS YP_001265669.1 148545567 5195553 356185..356922 1 NC_009512.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 356922 5195553 Pput_0312 Pseudomonas putida F1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001265669.1 356185 D 351746 CDS YP_001265670.1 148545568 5195554 356933..357703 1 NC_009512.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 357703 5195554 Pput_0313 Pseudomonas putida F1 imidazole glycerol phosphate synthase subunit HisF YP_001265670.1 356933 D 351746 CDS YP_001265671.1 148545569 5194744 complement(357842..359020) 1 NC_009512.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 359020 5194744 Pput_0314 Pseudomonas putida F1 glycine betaine/L-proline ABC transporter ATPase YP_001265671.1 357842 R 351746 CDS YP_001265672.1 148545570 5194745 complement(359017..359862) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 359862 5194745 Pput_0315 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265672.1 359017 R 351746 CDS YP_001265673.1 148545571 5191624 complement(359947..360894) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 360894 5191624 Pput_0316 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001265673.1 359947 R 351746 CDS YP_001265674.1 148545572 5191625 361347..362723 1 NC_009512.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 362723 5191625 Pput_0317 Pseudomonas putida F1 L-serine dehydratase 1 YP_001265674.1 361347 D 351746 CDS YP_001265675.1 148545573 5191817 363225..364331 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 364331 5191817 Pput_0318 Pseudomonas putida F1 AraC family transcriptional regulator YP_001265675.1 363225 D 351746 CDS YP_001265676.1 148545574 5191818 complement(364453..364710) 1 NC_009512.1 hypothetical protein 364710 5191818 Pput_0319 Pseudomonas putida F1 hypothetical protein YP_001265676.1 364453 R 351746 CDS YP_001265677.1 148545575 5194223 365049..366746 1 NC_009512.1 PFAM: Ricin B lectin; Ricin B lectin 366746 5194223 Pput_0320 Pseudomonas putida F1 Ricin B lectin YP_001265677.1 365049 D 351746 CDS YP_001265678.1 148545576 5195107 complement(366791..367261) 1 NC_009512.1 hypothetical protein 367261 5195107 Pput_0321 Pseudomonas putida F1 hypothetical protein YP_001265678.1 366791 R 351746 CDS YP_001265679.1 148545577 5195108 complement(367272..368237) 1 NC_009512.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 368237 5195108 Pput_0322 Pseudomonas putida F1 3-hydroxybutyryl-CoA dehydrogenase YP_001265679.1 367272 R 351746 CDS YP_001265680.1 148545578 5190379 complement(368408..369292) 1 NC_009512.1 PFAM: protein of unknown function DUF849; hypothetical protein 369292 5190379 Pput_0323 Pseudomonas putida F1 hypothetical protein YP_001265680.1 368408 R 351746 CDS YP_001265681.1 148545579 5190380 complement(369416..370360) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 370360 5190380 Pput_0324 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001265681.1 369416 R 351746 CDS YP_001265682.1 148545580 5191508 370505..371452 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 371452 5191508 Pput_0325 Pseudomonas putida F1 AraC family transcriptional regulator YP_001265682.1 370505 D 351746 CDS YP_001265683.1 148545581 5191509 complement(371456..372073) 1 NC_009512.1 hypothetical protein 372073 5191509 Pput_0326 Pseudomonas putida F1 hypothetical protein YP_001265683.1 371456 R 351746 CDS YP_001265684.1 148545582 5195483 complement(372145..372837) 1 NC_009512.1 hypothetical protein 372837 5195483 Pput_0327 Pseudomonas putida F1 hypothetical protein YP_001265684.1 372145 R 351746 CDS YP_001265685.1 148545583 5195484 complement(372976..373392) 1 NC_009512.1 PFAM: protein of unknown function DUF1311; hypothetical protein 373392 5195484 Pput_0328 Pseudomonas putida F1 hypothetical protein YP_001265685.1 372976 R 351746 CDS YP_001265686.1 148545584 5195489 373678..374655 1 NC_009512.1 PFAM: peptidase M19, renal dipeptidase; membrane dipeptidase 374655 5195489 Pput_0329 Pseudomonas putida F1 membrane dipeptidase YP_001265686.1 373678 D 351746 CDS YP_001265687.1 148545585 5195490 374732..375262 1 NC_009512.1 hypothetical protein 375262 5195490 Pput_0330 Pseudomonas putida F1 hypothetical protein YP_001265687.1 374732 D 351746 CDS YP_001265688.1 148545586 5191364 375278..377338 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase 377338 5191364 Pput_0331 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001265688.1 375278 D 351746 CDS YP_001265689.1 148545587 5191365 377517..379469 1 NC_009512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 379469 5191365 Pput_0332 Pseudomonas putida F1 hypothetical protein YP_001265689.1 377517 D 351746 CDS YP_001265690.1 148545588 5190882 379469..380701 1 NC_009512.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; electron transfer flavoprotein subunit alpha-like protein 380701 5190882 Pput_0333 Pseudomonas putida F1 electron transfer flavoprotein subunit alpha-like protein YP_001265690.1 379469 D 351746 CDS YP_001265691.1 148545589 5190883 380712..381482 1 NC_009512.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; electron transfer flavoprotein subunit alpha/beta-like protein 381482 5190883 Pput_0334 Pseudomonas putida F1 electron transfer flavoprotein subunit alpha/beta-like protein YP_001265691.1 380712 D 351746 CDS YP_001265692.1 148545590 5191020 382083..382910 1 NC_009512.1 hypothetical protein 382910 5191020 Pput_0335 Pseudomonas putida F1 hypothetical protein YP_001265692.1 382083 D 351746 CDS YP_001265693.1 148545591 5191021 complement(382991..384283) 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 384283 5191021 Pput_0336 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001265693.1 382991 R 351746 CDS YP_001265694.1 148545592 5191554 384579..385679 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 385679 5191554 Pput_0337 Pseudomonas putida F1 oxidoreductase FAD-binding subunit YP_001265694.1 384579 D 351746 CDS YP_001265695.1 148545593 5191555 385773..386495 1 NC_009512.1 hypothetical protein 386495 5191555 Pput_0338 Pseudomonas putida F1 hypothetical protein YP_001265695.1 385773 D 351746 CDS YP_001265696.1 148545594 5190931 complement(386498..388123) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 388123 5190931 Pput_0339 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001265696.1 386498 R 351746 CDS YP_001265697.1 148545595 5190932 388390..388620 1 NC_009512.1 hypothetical protein 388620 5190932 Pput_0340 Pseudomonas putida F1 hypothetical protein YP_001265697.1 388390 D 351746 CDS YP_001265698.1 148545596 5193300 388617..388919 1 NC_009512.1 PFAM: protein of unknown function DUF710; hypothetical protein 388919 5193300 Pput_0341 Pseudomonas putida F1 hypothetical protein YP_001265698.1 388617 D 351746 CDS YP_001265699.1 148545597 5193881 389241..391178 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 391178 5193881 Pput_0342 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001265699.1 389241 D 351746 CDS YP_001265700.1 148545598 5193882 complement(391317..392357) 1 NC_009512.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase 392357 5193882 Pput_0343 Pseudomonas putida F1 threonine aldolase YP_001265700.1 391317 R 351746 CDS YP_001265701.1 148545599 5193606 392682..393935 1 NC_009512.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 393935 5193606 Pput_0344 Pseudomonas putida F1 serine hydroxymethyltransferase YP_001265701.1 392682 D 351746 CDS YP_001265702.1 148545600 5193607 393951..395201 1 NC_009512.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta 395201 5193607 Pput_0345 Pseudomonas putida F1 sarcosine oxidase subunit beta YP_001265702.1 393951 D 351746 CDS YP_001265703.1 148545601 5190937 395216..395551 1 NC_009512.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 395551 5190937 Pput_0346 Pseudomonas putida F1 sarcosine oxidase subunit delta YP_001265703.1 395216 D 351746 CDS YP_001265704.1 148545602 5190938 395548..398562 1 NC_009512.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; sarcosine oxidase subunit alpha 398562 5190938 Pput_0347 Pseudomonas putida F1 sarcosine oxidase subunit alpha YP_001265704.1 395548 D 351746 CDS YP_001265705.1 148545603 5191803 398733..399365 1 NC_009512.1 TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 399365 5191803 Pput_0348 Pseudomonas putida F1 sarcosine oxidase subunit gamma YP_001265705.1 398733 D 351746 CDS YP_001265706.1 148545604 5191804 399377..400234 1 NC_009512.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 400234 5191804 Pput_0349 Pseudomonas putida F1 formyltetrahydrofolate deformylase YP_001265706.1 399377 D 351746 CDS YP_001265707.1 148545605 5194960 400536..401735 1 NC_009512.1 TIGRFAM: Formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; formaldehyde dehydrogenase 401735 5194960 Pput_0350 Pseudomonas putida F1 formaldehyde dehydrogenase YP_001265707.1 400536 D 351746 CDS YP_001265708.1 148545606 5194961 complement(401894..402682) 1 NC_009512.1 hypothetical protein 402682 5194961 Pput_0351 Pseudomonas putida F1 hypothetical protein YP_001265708.1 401894 R 351746 CDS YP_001265709.1 148545607 5193974 402883..403458 1 NC_009512.1 hypothetical protein 403458 5193974 Pput_0352 Pseudomonas putida F1 hypothetical protein YP_001265709.1 402883 D 351746 CDS YP_001265710.1 148545608 5193975 complement(403746..404732) 1 NC_009512.1 hypothetical protein 404732 5193975 Pput_0353 Pseudomonas putida F1 hypothetical protein YP_001265710.1 403746 R 351746 CDS YP_001265711.1 148545609 5191035 405491..406081 1 NC_009512.1 hypothetical protein 406081 5191035 Pput_0354 Pseudomonas putida F1 hypothetical protein YP_001265711.1 405491 D 351746 CDS YP_001265712.1 148545610 5191036 complement(406167..407054) 1 NC_009512.1 PFAM: phospholipid/glycerol acyltransferase; putative acyltransferase 407054 5191036 Pput_0355 Pseudomonas putida F1 putative acyltransferase YP_001265712.1 406167 R 351746 CDS YP_001265713.1 148545611 5191432 407236..407736 1 NC_009512.1 PFAM: protein of unknown function DUF785; hypothetical protein 407736 5191432 Pput_0356 Pseudomonas putida F1 hypothetical protein YP_001265713.1 407236 D 351746 CDS YP_001265714.1 148545612 5191433 407884..408564 1 NC_009512.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 408564 5191433 Pput_0357 Pseudomonas putida F1 DNA-binding response regulator CreB YP_001265714.1 407884 D 351746 CDS YP_001265715.1 148545613 5193825 408564..410000 1 NC_009512.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 410000 5193825 Pput_0358 Pseudomonas putida F1 sensory histidine kinase CreC YP_001265715.1 408564 D 351746 CDS YP_001265716.1 148545614 5193826 410108..411436 1 NC_009512.1 PFAM: Inner membrane CreD family protein; hypothetical protein 411436 5193826 Pput_0359 Pseudomonas putida F1 hypothetical protein YP_001265716.1 410108 D 351746 CDS YP_001265717.1 148545615 5191043 complement(411601..412224) 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 412224 5191043 Pput_0360 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001265717.1 411601 R 351746 CDS YP_001265718.1 148545616 5191044 complement(412228..412950) 1 NC_009512.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 412950 5191044 Pput_0361 Pseudomonas putida F1 methionine sulfoxide reductase A YP_001265718.1 412228 R 351746 CDS YP_001265719.1 148545617 5195577 complement(413065..415845) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 415845 5195577 Pput_0362 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001265719.1 413065 R 351746 CDS YP_001265720.1 148545618 5190864 complement(416167..417798) 1 NC_009512.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 417798 5190864 Pput_0363 Pseudomonas putida F1 dihydrolipoamide acetyltransferase YP_001265720.1 416167 R 351746 CDS YP_001265721.1 148545619 5190865 complement(417812..420457) 1 NC_009512.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 420457 aceE 5190865 aceE Pseudomonas putida F1 pyruvate dehydrogenase subunit E1 YP_001265721.1 417812 R 351746 CDS YP_001265722.1 148545620 5192943 420841..423774 1 NC_009512.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 423774 5192943 Pput_0365 Pseudomonas putida F1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001265722.1 420841 D 351746 CDS YP_001265723.1 148545621 5192944 424009..425058 1 NC_009512.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase II 425058 5192944 Pput_0366 Pseudomonas putida F1 lipopolysaccharide heptosyltransferase II YP_001265723.1 424009 D 351746 CDS YP_001265724.1 148545622 5192956 425059..426117 1 NC_009512.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase I 426117 5192956 Pput_0367 Pseudomonas putida F1 lipopolysaccharide heptosyltransferase I YP_001265724.1 425059 D 351746 CDS YP_001265725.1 148545623 5192957 426117..427241 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 427241 5192957 Pput_0368 Pseudomonas putida F1 group 1 glycosyl transferase YP_001265725.1 426117 D 351746 CDS YP_001265726.1 148545624 5193929 427238..428044 1 NC_009512.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 428044 5193929 Pput_0369 Pseudomonas putida F1 lipopolysaccharide kinase YP_001265726.1 427238 D 351746 CDS YP_001265727.1 148545625 5193930 428044..428778 1 NC_009512.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 428778 5193930 Pput_0370 Pseudomonas putida F1 lipopolysaccharide kinase YP_001265727.1 428044 D 351746 CDS YP_001265728.1 148545626 5192594 428775..429527 1 NC_009512.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 429527 5192594 Pput_0371 Pseudomonas putida F1 lipopolysaccharide kinase YP_001265728.1 428775 D 351746 CDS YP_001265729.1 148545627 5192595 429527..430969 1 NC_009512.1 hypothetical protein 430969 5192595 Pput_0372 Pseudomonas putida F1 hypothetical protein YP_001265729.1 429527 D 351746 CDS YP_001265730.1 148545628 5192349 complement(430987..433773) 1 NC_009512.1 hypothetical protein 433773 5192349 Pput_0373 Pseudomonas putida F1 hypothetical protein YP_001265730.1 430987 R 351746 CDS YP_001265731.1 148545629 5192350 complement(433841..434026) 1 NC_009512.1 hypothetical protein 434026 5192350 Pput_0374 Pseudomonas putida F1 hypothetical protein YP_001265731.1 433841 R 351746 CDS YP_001265732.1 148545630 5194455 complement(434023..435135) 1 NC_009512.1 PFAM: PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 435135 5194455 Pput_0375 Pseudomonas putida F1 PepSY-associated TM helix domain-containing protein YP_001265732.1 434023 R 351746 CDS YP_001265733.1 148545631 5194456 complement(435192..437624) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 437624 5194456 Pput_0376 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001265733.1 435192 R 351746 CDS YP_001265734.1 148545632 5191685 complement(437878..438834) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 438834 5191685 Pput_0377 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001265734.1 437878 R 351746 CDS YP_001265735.1 148545633 5191686 complement(438831..439349) 1 NC_009512.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 439349 5191686 Pput_0378 Pseudomonas putida F1 RNA polymerase sigma factor YP_001265735.1 438831 R 351746 CDS YP_001265736.1 148545634 5192768 complement(439553..440263) 1 NC_009512.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 440263 5192768 Pput_0379 Pseudomonas putida F1 DNA polymerase III subunit epsilon YP_001265736.1 439553 R 351746 CDS YP_001265737.1 148545635 5192769 complement(440260..442197) 1 NC_009512.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; hypothetical protein 442197 5192769 Pput_0380 Pseudomonas putida F1 hypothetical protein YP_001265737.1 440260 R 351746 CDS YP_001265738.1 148545636 5190598 442314..442859 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 442859 5190598 Pput_0381 Pseudomonas putida F1 response regulator receiver protein YP_001265738.1 442314 D 351746 CDS YP_001265739.1 148545637 5190599 complement(442903..445080) 1 NC_009512.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 445080 5190599 Pput_0382 Pseudomonas putida F1 malate synthase G YP_001265739.1 442903 R 351746 CDS YP_001265740.1 148545638 5195180 445530..446048 1 NC_009512.1 PFAM: amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 446048 5195180 Pput_0383 Pseudomonas putida F1 amino acid-binding ACT domain-containing protein YP_001265740.1 445530 D 351746 CDS YP_001265741.1 148545639 5193723 complement(446377..447264) 1 NC_009512.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; transporter DMT superfamily protein 447264 5193723 Pput_0384 Pseudomonas putida F1 transporter DMT superfamily protein YP_001265741.1 446377 R 351746 CDS YP_001265742.1 148545640 5193724 complement(447329..448303) 1 NC_009512.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 448303 5193724 Pput_0385 Pseudomonas putida F1 serine/threonine protein kinase YP_001265742.1 447329 R 351746 CDS YP_001265743.1 148545641 5195527 complement(448462..449226) 1 NC_009512.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; ModE family transcriptional regulator 449226 5195527 Pput_0386 Pseudomonas putida F1 ModE family transcriptional regulator YP_001265743.1 448462 R 351746 CDS YP_001265744.1 148545642 5195528 complement(449276..450007) 1 NC_009512.1 amidophosphoribosyltransferase-like protein 450007 5195528 Pput_0387 Pseudomonas putida F1 amidophosphoribosyltransferase-like protein YP_001265744.1 449276 R 351746 CDS YP_001265745.1 148545643 5195060 450097..451155 1 NC_009512.1 TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 451155 5195060 Pput_0388 Pseudomonas putida F1 biotin synthase YP_001265745.1 450097 D 351746 CDS YP_001265746.1 148545644 5195061 451157..452329 1 NC_009512.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 452329 5195061 Pput_0389 Pseudomonas putida F1 8-amino-7-oxononanoate synthase YP_001265746.1 451157 D 351746 CDS YP_001265747.1 148545645 5194411 452322..453053 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; carboxylesterase 453053 5194411 Pput_0390 Pseudomonas putida F1 carboxylesterase YP_001265747.1 452322 D 351746 CDS YP_001265748.1 148545646 5194412 453034..453864 1 NC_009512.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; biotin biosynthesis protein BioC 453864 5194412 Pput_0391 Pseudomonas putida F1 biotin biosynthesis protein BioC YP_001265748.1 453034 D 351746 CDS YP_001265749.1 148545647 5194192 453875..454555 1 NC_009512.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 454555 bioD 5194192 bioD Pseudomonas putida F1 dithiobiotin synthetase YP_001265749.1 453875 D 351746 CDS YP_001265750.1 148545648 5194193 454767..455063 1 NC_009512.1 hypothetical protein 455063 5194193 Pput_0393 Pseudomonas putida F1 hypothetical protein YP_001265750.1 454767 D 351746 CDS YP_001265751.1 148545649 5194670 455352..457157 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 457157 5194670 Pput_0394 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001265751.1 455352 D 351746 CDS YP_001265752.1 148545650 5194671 457459..458736 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 458736 5194671 Pput_0395 Pseudomonas putida F1 diguanylate cyclase YP_001265752.1 457459 D 351746 CDS YP_001265753.1 148545651 5194014 458861..460639 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 460639 5194014 Pput_0396 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001265753.1 458861 D 351746 CDS YP_001265754.1 148545652 5194015 complement(461003..461926) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 461926 5194015 Pput_0397 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265754.1 461003 R 351746 CDS YP_001265755.1 148545653 5192648 462138..463418 1 NC_009512.1 PFAM: aminotransferase class-III; class III aminotransferase 463418 5192648 Pput_0398 Pseudomonas putida F1 class III aminotransferase YP_001265755.1 462138 D 351746 CDS YP_001265756.1 148545654 5192649 463566..463724 1 NC_009512.1 PFAM: protein of unknown function UPF0057; hypothetical protein 463724 5192649 Pput_0399 Pseudomonas putida F1 hypothetical protein YP_001265756.1 463566 D 351746 CDS YP_001265757.1 148545655 5193426 complement(463788..465611) 1 NC_009512.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 465611 5193426 Pput_0400 Pseudomonas putida F1 peptidase S9 prolyl oligopeptidase YP_001265757.1 463788 R 351746 CDS YP_001265758.1 148545656 5193427 complement(465577..466707) 1 NC_009512.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 466707 5193427 Pput_0401 Pseudomonas putida F1 pyrroloquinoline quinone biosynthesis protein PqqE YP_001265758.1 465577 R 351746 CDS YP_001265759.1 148545657 5193438 complement(466709..466984) 1 NC_009512.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 466984 5193438 Pput_0402 Pseudomonas putida F1 pyrroloquinoline quinone biosynthesis protein PqqD YP_001265759.1 466709 R 351746 CDS YP_001265760.1 148545658 5193439 complement(466981..467736) 1 NC_009512.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 467736 5193439 Pput_0403 Pseudomonas putida F1 pyrroloquinoline quinone biosynthesis protein PqqC YP_001265760.1 466981 R 351746 CDS YP_001265761.1 148545659 5191220 complement(467899..468810) 1 NC_009512.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 468810 5191220 Pput_0404 Pseudomonas putida F1 pyrroloquinoline quinone biosynthesis protein PqqB YP_001265761.1 467899 R 351746 CDS YP_001265762.1 148545660 5194722 complement(469120..471549) 1 NC_009512.1 TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; coenzyme PQQ biosynthesis protein PqqF 471549 5194722 Pput_0405 Pseudomonas putida F1 coenzyme PQQ biosynthesis protein PqqF YP_001265762.1 469120 R 351746 CDS YP_001265763.1 148545661 5194723 complement(471561..472355) 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 472355 5194723 Pput_0406 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001265763.1 471561 R 351746 CDS YP_001265764.1 148545662 5195255 complement(472370..474052) 1 NC_009512.1 PFAM: amine oxidase; amine oxidase 474052 5195255 Pput_0407 Pseudomonas putida F1 amine oxidase YP_001265764.1 472370 R 351746 CDS YP_001265765.1 148545663 5195256 complement(474365..474826) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 474826 5195256 Pput_0408 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001265765.1 474365 R 351746 CDS YP_001265766.1 148545664 5195068 475014..475568 1 NC_009512.1 hypothetical protein 475568 5195068 Pput_0409 Pseudomonas putida F1 hypothetical protein YP_001265766.1 475014 D 351746 CDS YP_001265767.1 148545665 5195069 complement(475912..476193) 1 NC_009512.1 hypothetical protein 476193 5195069 Pput_0410 Pseudomonas putida F1 hypothetical protein YP_001265767.1 475912 R 351746 CDS YP_001265768.1 148545666 5194892 476510..477103 1 NC_009512.1 hypothetical protein 477103 5194892 Pput_0411 Pseudomonas putida F1 hypothetical protein YP_001265768.1 476510 D 351746 CDS YP_001265769.1 148545667 5194893 477112..477678 1 NC_009512.1 PFAM: protein of unknown function DUF955; hypothetical protein 477678 5194893 Pput_0412 Pseudomonas putida F1 hypothetical protein YP_001265769.1 477112 D 351746 CDS YP_001265770.1 148545668 5195324 477665..478732 1 NC_009512.1 hypothetical protein 478732 5195324 Pput_0413 Pseudomonas putida F1 hypothetical protein YP_001265770.1 477665 D 351746 CDS YP_001265771.1 148545669 5195325 complement(478721..479329) 1 NC_009512.1 hypothetical protein 479329 5195325 Pput_0414 Pseudomonas putida F1 hypothetical protein YP_001265771.1 478721 R 351746 CDS YP_001265772.1 148545670 5194259 complement(479578..480273) 1 NC_009512.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 480273 5194259 Pput_0415 Pseudomonas putida F1 integrase catalytic subunit YP_001265772.1 479578 R 351746 CDS YP_001265773.1 148545671 5194295 complement(481598..481834) 1 NC_009512.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 481834 5194295 Pput_0419 Pseudomonas putida F1 transposase IS3/IS911 family protein YP_001265773.1 481598 R 351746 CDS YP_001265774.1 148545672 5194819 complement(482132..485875) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 485875 5194819 Pput_0420 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001265774.1 482132 R 351746 CDS YP_001265775.1 148545673 5194712 complement(486003..487853) 1 NC_009512.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 487853 5194712 Pput_0421 Pseudomonas putida F1 RNA polymerase sigma factor RpoD YP_001265775.1 486003 R 351746 CDS YP_001265776.1 148545674 5194713 complement(487921..489903) 1 NC_009512.1 synthesizes RNA primers at the replication forks; DNA primase 489903 dnaG 5194713 dnaG Pseudomonas putida F1 DNA primase YP_001265776.1 487921 R 351746 CDS YP_001265777.1 148545675 5194205 complement(490208..490423) 1 NC_009512.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 490423 rpsU 5194205 rpsU Pseudomonas putida F1 30S ribosomal protein S21 YP_001265777.1 490208 R 351746 CDS YP_001265778.1 148545676 5194206 490628..491653 1 NC_009512.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 491653 5194206 Pput_0424 Pseudomonas putida F1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001265778.1 490628 D 351746 CDS YP_001265779.1 148545677 5194572 complement(491671..492240) 1 NC_009512.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 492240 5194572 Pput_0425 Pseudomonas putida F1 putative glycerol-3-phosphate acyltransferase PlsY YP_001265779.1 491671 R 351746 CDS YP_001265780.1 148545678 5194573 492315..492671 1 NC_009512.1 TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 492671 5194573 Pput_0426 Pseudomonas putida F1 dihydroneopterin aldolase YP_001265780.1 492315 D 351746 CDS YP_001265781.1 148545679 5194957 492662..493171 1 NC_009512.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 493171 5194957 Pput_0427 Pseudomonas putida F1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001265781.1 492662 D 351746 CDS YP_001265782.1 148545680 5190866 complement(493393..494499) 1 NC_009512.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 494499 cca 5190866 cca Pseudomonas putida F1 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_001265782.1 493393 R 351746 CDS YP_001265783.1 148545681 5190867 complement(494555..496123) 1 NC_009512.1 PFAM: SpoVR family protein; SpoVR family protein 496123 5190867 Pput_0429 Pseudomonas putida F1 SpoVR family protein YP_001265783.1 494555 R 351746 CDS YP_001265784.1 148545682 5191290 complement(496120..497391) 1 NC_009512.1 PFAM: protein of unknown function DUF444; hypothetical protein 497391 5191290 Pput_0430 Pseudomonas putida F1 hypothetical protein YP_001265784.1 496120 R 351746 CDS YP_001265785.1 148545683 5191291 complement(497547..499469) 1 NC_009512.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; putative serine protein kinase PrkA 499469 5191291 Pput_0431 Pseudomonas putida F1 putative serine protein kinase PrkA YP_001265785.1 497547 R 351746 CDS YP_001265786.1 148545684 5190966 complement(499752..500084) 1 NC_009512.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 500084 glpE 5190966 glpE Pseudomonas putida F1 thiosulfate sulfurtransferase YP_001265786.1 499752 R 351746 CDS YP_001265787.1 148545685 5190967 complement(500099..500965) 1 NC_009512.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 500965 apaH 5190967 apaH Pseudomonas putida F1 diadenosine tetraphosphatase YP_001265787.1 500099 R 351746 CDS YP_001265788.1 148545686 5192478 complement(500965..501345) 1 NC_009512.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 501345 apaG 5192478 apaG Pseudomonas putida F1 ApaG protein YP_001265788.1 500965 R 351746 CDS YP_001265789.1 148545687 5192479 complement(501543..502346) 1 NC_009512.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 502346 ksgA 5192479 ksgA Pseudomonas putida F1 dimethyladenosine transferase YP_001265789.1 501543 R 351746 CDS YP_001265790.1 148545688 5192704 complement(502343..503332) 1 NC_009512.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 503332 pdxA 5192704 pdxA Pseudomonas putida F1 4-hydroxythreonine-4-phosphate dehydrogenase YP_001265790.1 502343 R 351746 CDS YP_001265791.1 148545689 5192705 complement(503329..504648) 1 NC_009512.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain; SurA domain-containing protein 504648 5192705 Pput_0437 Pseudomonas putida F1 SurA domain-containing protein YP_001265791.1 503329 R 351746 CDS YP_001265792.1 148545690 5193833 complement(504629..507436) 1 NC_009512.1 PFAM: OstA family protein; Organic solvent tolerance protein; organic solvent tolerance protein 507436 5193833 Pput_0438 Pseudomonas putida F1 organic solvent tolerance protein YP_001265792.1 504629 R 351746 CDS YP_001265793.1 148545691 5193834 507567..508586 1 NC_009512.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 508586 5193834 Pput_0439 Pseudomonas putida F1 aminoglycoside phosphotransferase YP_001265793.1 507567 D 351746 CDS YP_001265794.1 148545692 5192405 508583..509254 1 NC_009512.1 PFAM: Nucleotidyl transferase; nucleotidyl transferase 509254 5192405 Pput_0440 Pseudomonas putida F1 nucleotidyl transferase YP_001265794.1 508583 D 351746 CDS YP_001265795.1 148545693 5192406 509256..510023 1 NC_009512.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 510023 5192406 Pput_0441 Pseudomonas putida F1 heat shock protein DnaJ domain-containing protein YP_001265795.1 509256 D 351746 CDS YP_001265796.1 148545694 5193307 complement(510051..511049) 1 NC_009512.1 hypothetical protein 511049 5193307 Pput_0442 Pseudomonas putida F1 hypothetical protein YP_001265796.1 510051 R 351746 CDS YP_001265797.1 148545695 5193308 511145..513532 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein, family 3; PAS/PAC sensor signal transduction histidine kinase 513532 5193308 Pput_0443 Pseudomonas putida F1 PAS/PAC sensor signal transduction histidine kinase YP_001265797.1 511145 D 351746 CDS YP_001265798.1 148545696 5193727 513543..514172 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 514172 5193727 Pput_0444 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001265798.1 513543 D 351746 CDS YP_001265799.1 148545697 5193728 514468..515592 1 NC_009512.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 515592 5193728 Pput_0445 Pseudomonas putida F1 spermidine/putrescine ABC transporter ATPase YP_001265799.1 514468 D 351746 CDS YP_001265800.1 148545698 5192269 515633..516667 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 516667 5192269 Pput_0446 Pseudomonas putida F1 extracellular solute-binding protein YP_001265800.1 515633 D 351746 CDS YP_001265801.1 148545699 5192270 516728..517975 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 517975 5192270 Pput_0447 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265801.1 516728 D 351746 CDS YP_001265802.1 148545700 5194143 517986..518813 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 518813 5194143 Pput_0448 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001265802.1 517986 D 351746 CDS YP_001265803.1 148545701 5195479 518963..519637 1 NC_009512.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 519637 5195479 Pput_0449 Pseudomonas putida F1 ribulose-phosphate 3-epimerase YP_001265803.1 518963 D 351746 CDS YP_001265804.1 148545702 5195480 519634..520452 1 NC_009512.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 520452 5195480 Pput_0450 Pseudomonas putida F1 phosphoglycolate phosphatase YP_001265804.1 519634 D 351746 CDS YP_001265805.1 148545703 5194122 520522..522003 1 NC_009512.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 522003 5194122 Pput_0451 Pseudomonas putida F1 anthranilate synthase component I YP_001265805.1 520522 D 351746 CDS YP_001265806.1 148545704 5194123 complement(522250..524139) 1 NC_009512.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: lipolytic enzyme, G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 524139 5194123 Pput_0452 Pseudomonas putida F1 outer membrane autotransporter YP_001265806.1 522250 R 351746 CDS YP_001265807.1 148545705 5194311 524507..525100 1 NC_009512.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 525100 5194311 Pput_0453 Pseudomonas putida F1 anthranilate synthase component II YP_001265807.1 524507 D 351746 CDS YP_001265808.1 148545706 5194312 525110..526159 1 NC_009512.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 526159 trpD 5194312 trpD Pseudomonas putida F1 anthranilate phosphoribosyltransferase YP_001265808.1 525110 D 351746 CDS YP_001265809.1 148545707 5194255 526156..526989 1 NC_009512.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 526989 trpC 5194255 trpC Pseudomonas putida F1 Indole-3-glycerol phosphate synthase YP_001265809.1 526156 D 351746 CDS YP_001265810.1 148545708 5194256 527136..527840 1 NC_009512.1 hypothetical protein 527840 5194256 Pput_0456 Pseudomonas putida F1 hypothetical protein YP_001265810.1 527136 D 351746 CDS YP_001265811.1 148545709 5193695 complement(527837..528508) 1 NC_009512.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 528508 5193695 Pput_0457 Pseudomonas putida F1 cAMP-regulatory protein YP_001265811.1 527837 R 351746 CDS YP_001265812.1 148545710 5193696 528673..529095 1 NC_009512.1 PFAM: OsmC family protein; OsmC family protein 529095 5193696 Pput_0458 Pseudomonas putida F1 OsmC family protein YP_001265812.1 528673 D 351746 CDS YP_001265813.1 148545711 5190427 complement(529172..530212) 1 NC_009512.1 hypothetical protein 530212 5190427 Pput_0459 Pseudomonas putida F1 hypothetical protein YP_001265813.1 529172 R 351746 CDS YP_001265814.1 148545712 5190428 complement(530223..530870) 1 NC_009512.1 ubiquinone biosynthesis protein COQ7-like protein 530870 5190428 Pput_0460 Pseudomonas putida F1 ubiquinone biosynthesis protein COQ7-like protein YP_001265814.1 530223 R 351746 CDS YP_001265815.1 148545713 5191106 complement(530936..531274) 1 NC_009512.1 PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 531274 5191106 Pput_0461 Pseudomonas putida F1 histidine triad (HIT) protein YP_001265815.1 530936 R 351746 CDS YP_001265816.1 148545714 5191107 complement(531338..532120) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 532120 5191107 Pput_0462 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001265816.1 531338 R 351746 CDS YP_001265817.1 148545715 5192169 complement(532188..533144) 1 NC_009512.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 533144 5192169 Pput_0463 Pseudomonas putida F1 2-nitropropane dioxygenase YP_001265817.1 532188 R 351746 CDS YP_001265818.1 148545716 5192170 complement(533173..533598) 1 NC_009512.1 PFAM: conserved hypothetical protein 701; hypothetical protein 533598 5192170 Pput_0464 Pseudomonas putida F1 hypothetical protein YP_001265818.1 533173 R 351746 CDS YP_001265819.1 148545717 5191886 533741..534775 1 NC_009512.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 534775 argC 5191886 argC Pseudomonas putida F1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001265819.1 533741 D 351746 CDS YP_001265820.1 148545718 5191887 534875..535273 1 NC_009512.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 535273 5191887 Pput_0466 Pseudomonas putida F1 iron-sulfur cluster insertion protein ErpA YP_001265820.1 534875 D 351746 CDS YP_001265821.1 148545719 5192198 complement(535333..536424) 1 NC_009512.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 536424 anmK 5192198 anmK Pseudomonas putida F1 anhydro-N-acetylmuramic acid kinase YP_001265821.1 535333 R 351746 CDS YP_001265822.1 148545720 5192199 complement(536428..537849) 1 NC_009512.1 PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; peptidase M23B 537849 5192199 Pput_0468 Pseudomonas putida F1 peptidase M23B YP_001265822.1 536428 R 351746 CDS YP_001265823.1 148545721 5192381 538063..539262 1 NC_009512.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 539262 5192381 Pput_0469 Pseudomonas putida F1 tyrosyl-tRNA synthetase YP_001265823.1 538063 D 351746 CDS YP_001265824.1 148545722 5192887 545178..546137 1 NC_009512.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 546137 5192887 Pput_0470 Pseudomonas putida F1 biotin--protein ligase YP_001265824.1 545178 D 351746 CDS YP_001265825.1 148545723 5193654 546127..546876 1 NC_009512.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 546876 5193654 Pput_0471 Pseudomonas putida F1 pantothenate kinase YP_001265825.1 546127 D 351746 CDS YP_001265826.1 148545724 5190395 546884..547309 1 NC_009512.1 hypothetical protein 547309 5190395 Pput_0472 Pseudomonas putida F1 hypothetical protein YP_001265826.1 546884 D 351746 CDS YP_001265827.1 148545725 5191745 547827..549020 1 NC_009512.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 549020 5191745 Pput_0473 Pseudomonas putida F1 elongation factor Tu YP_001265827.1 547827 D 351746 CDS YP_001265828.1 148545726 5194424 549195..549563 1 NC_009512.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 549563 secE 5194424 secE Pseudomonas putida F1 preprotein translocase subunit SecE YP_001265828.1 549195 D 351746 CDS YP_001265829.1 148545727 5191259 549573..550106 1 NC_009512.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 550106 nusG 5191259 nusG Pseudomonas putida F1 transcription antitermination protein NusG YP_001265829.1 549573 D 351746 CDS YP_001265830.1 148545728 5190246 550226..550657 1 NC_009512.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 550657 rplK 5190246 rplK Pseudomonas putida F1 50S ribosomal protein L11 YP_001265830.1 550226 D 351746 CDS YP_001265831.1 148545729 5190247 550657..551352 1 NC_009512.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 551352 rplA 5190247 rplA Pseudomonas putida F1 50S ribosomal protein L1 YP_001265831.1 550657 D 351746 CDS YP_001265832.1 148545730 5193278 551463..552050 1 NC_009512.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 552050 rplJ 5193278 rplJ Pseudomonas putida F1 50S ribosomal protein L10 YP_001265832.1 551463 D 351746 CDS YP_001265833.1 148545731 5193279 552127..552492 1 NC_009512.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 552492 rplL 5193279 rplL Pseudomonas putida F1 50S ribosomal protein L7/L12 YP_001265833.1 552127 D 351746 CDS YP_001265834.1 148545732 5191203 552713..556786 1 NC_009512.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 556786 rpoB 5191203 rpoB Pseudomonas putida F1 DNA-directed RNA polymerase subunit beta YP_001265834.1 552713 D 351746 CDS YP_001265835.1 148545733 5191204 556851..561050 1 NC_009512.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 561050 5191204 Pput_0481 Pseudomonas putida F1 DNA-directed RNA polymerase subunit beta' YP_001265835.1 556851 D 351746 CDS YP_001265836.1 148545734 5191913 561262..561633 1 NC_009512.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 561633 rpsL 5191913 rpsL Pseudomonas putida F1 30S ribosomal protein S12 YP_001265836.1 561262 D 351746 CDS YP_001265837.1 148545735 5191914 561740..562210 1 NC_009512.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 562210 5191914 Pput_0483 Pseudomonas putida F1 30S ribosomal protein S7 YP_001265837.1 561740 D 351746 CDS YP_001265838.1 148545736 5191649 562241..564388 1 NC_009512.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 564388 5191649 Pput_0484 Pseudomonas putida F1 elongation factor G YP_001265838.1 562241 D 351746 CDS YP_001265839.1 148545737 5191650 564416..565609 1 NC_009512.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 565609 5191650 Pput_0485 Pseudomonas putida F1 elongation factor Tu YP_001265839.1 564416 D 351746 CDS YP_001265840.1 148545738 5191312 565751..566062 1 NC_009512.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 566062 rpsJ 5191312 rpsJ Pseudomonas putida F1 30S ribosomal protein S10 YP_001265840.1 565751 D 351746 CDS YP_001265841.1 148545739 5191313 566143..566778 1 NC_009512.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 566778 rplC 5191313 rplC Pseudomonas putida F1 50S ribosomal protein L3 YP_001265841.1 566143 D 351746 CDS YP_001265842.1 148545740 5193772 566791..567393 1 NC_009512.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 567393 rplD 5193772 rplD Pseudomonas putida F1 50S ribosomal protein L4 YP_001265842.1 566791 D 351746 CDS YP_001265843.1 148545741 5193773 567390..567689 1 NC_009512.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 567689 rplW 5193773 rplW Pseudomonas putida F1 50S ribosomal protein L23 YP_001265843.1 567390 D 351746 CDS YP_001265844.1 148545742 5191812 567704..568528 1 NC_009512.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 568528 rplB 5191812 rplB Pseudomonas putida F1 50S ribosomal protein L2 YP_001265844.1 567704 D 351746 CDS YP_001265845.1 148545743 5192068 568545..568820 1 NC_009512.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 568820 rpsS 5192068 rpsS Pseudomonas putida F1 30S ribosomal protein S19 YP_001265845.1 568545 D 351746 CDS YP_001265846.1 148545744 5192069 568832..569164 1 NC_009512.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 569164 rplV 5192069 rplV Pseudomonas putida F1 50S ribosomal protein L22 YP_001265846.1 568832 D 351746 CDS YP_001265847.1 148545745 5193159 569178..569864 1 NC_009512.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 569864 rpsC 5193159 rpsC Pseudomonas putida F1 30S ribosomal protein S3 YP_001265847.1 569178 D 351746 CDS YP_001265848.1 148545746 5193160 569877..570290 1 NC_009512.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 570290 rplP 5193160 rplP Pseudomonas putida F1 50S ribosomal protein L16 YP_001265848.1 569877 D 351746 CDS YP_001265849.1 148545747 5193711 570290..570481 1 NC_009512.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 570481 5193711 Pput_0495 Pseudomonas putida F1 50S ribosomal protein L29 YP_001265849.1 570290 D 351746 CDS YP_001265850.1 148545748 5193712 570484..570750 1 NC_009512.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 570750 rpsQ 5193712 rpsQ Pseudomonas putida F1 30S ribosomal protein S17 YP_001265850.1 570484 D 351746 CDS YP_001265851.1 148545749 5190794 570774..571142 1 NC_009512.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 571142 rplN 5190794 rplN Pseudomonas putida F1 50S ribosomal protein L14 YP_001265851.1 570774 D 351746 CDS YP_001265852.1 148545750 5190795 571154..571468 1 NC_009512.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 571468 rplX 5190795 rplX Pseudomonas putida F1 50S ribosomal protein L24 YP_001265852.1 571154 D 351746 CDS YP_001265853.1 148545751 5193396 571489..572028 1 NC_009512.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 572028 rplE 5193396 rplE Pseudomonas putida F1 50S ribosomal protein L5 YP_001265853.1 571489 D 351746 CDS YP_001265854.1 148545752 5193397 572042..572347 1 NC_009512.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 572347 rpsN 5193397 rpsN Pseudomonas putida F1 30S ribosomal protein S14 YP_001265854.1 572042 D 351746 CDS YP_001265855.1 148545753 5190992 572556..572948 1 NC_009512.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 572948 rpsH 5190992 rpsH Pseudomonas putida F1 30S ribosomal protein S8 YP_001265855.1 572556 D 351746 CDS YP_001265856.1 148545754 5190993 572961..573494 1 NC_009512.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 573494 rplF 5190993 rplF Pseudomonas putida F1 50S ribosomal protein L6 YP_001265856.1 572961 D 351746 CDS YP_001265857.1 148545755 5192072 573505..573855 1 NC_009512.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 573855 rplR 5192072 rplR Pseudomonas putida F1 50S ribosomal protein L18 YP_001265857.1 573505 D 351746 CDS YP_001265858.1 148545756 5192073 573859..574359 1 NC_009512.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 574359 rpsE 5192073 rpsE Pseudomonas putida F1 30S ribosomal protein S5 YP_001265858.1 573859 D 351746 CDS YP_001265859.1 148545757 5190469 574362..574538 1 NC_009512.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 574538 rpmD 5190469 rpmD Pseudomonas putida F1 50S ribosomal protein L30 YP_001265859.1 574362 D 351746 CDS YP_001265860.1 148545758 5190470 574542..574976 1 NC_009512.1 late assembly protein; 50S ribosomal protein L15 574976 rplO 5190470 rplO Pseudomonas putida F1 50S ribosomal protein L15 YP_001265860.1 574542 D 351746 CDS YP_001265861.1 148545759 5191691 574977..576308 1 NC_009512.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 576308 secY 5191691 secY Pseudomonas putida F1 preprotein translocase subunit SecY YP_001265861.1 574977 D 351746 CDS YP_001265862.1 148545760 5191692 576286..576453 1 NC_009512.1 PFAM: ribosomal protein L36; 50S ribosomal protein L36 576453 5191692 Pput_0508 Pseudomonas putida F1 50S ribosomal protein L36 YP_001265862.1 576286 D 351746 CDS YP_001265863.1 148545761 5190838 576585..576941 1 NC_009512.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 576941 rpsM 5190838 rpsM Pseudomonas putida F1 30S ribosomal protein S13 YP_001265863.1 576585 D 351746 CDS YP_001265864.1 148545762 5190839 576960..577349 1 NC_009512.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 577349 5190839 Pput_0510 Pseudomonas putida F1 30S ribosomal protein S11 YP_001265864.1 576960 D 351746 CDS YP_001265865.1 148545763 5190543 577365..577985 1 NC_009512.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 577985 rpsD 5190543 rpsD Pseudomonas putida F1 30S ribosomal protein S4 YP_001265865.1 577365 D 351746 CDS YP_001265866.1 148545764 5190344 578008..579009 1 NC_009512.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 579009 5190344 Pput_0512 Pseudomonas putida F1 DNA-directed RNA polymerase subunit alpha YP_001265866.1 578008 D 351746 CDS YP_001265867.1 148545765 5190345 579052..579438 1 NC_009512.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 579438 rplQ 5190345 rplQ Pseudomonas putida F1 50S ribosomal protein L17 YP_001265867.1 579052 D 351746 CDS YP_001265868.1 148545766 5190746 579611..581050 1 NC_009512.1 PFAM: Catalase domain protein; catalase 581050 5190746 Pput_0514 Pseudomonas putida F1 catalase YP_001265868.1 579611 D 351746 CDS YP_001265869.1 148545767 5190747 581214..581678 1 NC_009512.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin 581678 5190747 Pput_0515 Pseudomonas putida F1 bacterioferritin YP_001265869.1 581214 D 351746 CDS YP_001265870.1 148545768 5192866 complement(581751..584585) 1 NC_009512.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 584585 uvrA 5192866 uvrA Pseudomonas putida F1 excinuclease ABC subunit A YP_001265870.1 581751 R 351746 CDS YP_001265871.1 148545769 5192867 584715..586109 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 586109 5192867 Pput_0517 Pseudomonas putida F1 major facilitator superfamily transporter YP_001265871.1 584715 D 351746 CDS YP_001265872.1 148545770 5192304 586119..586664 1 NC_009512.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 586664 5192304 Pput_0518 Pseudomonas putida F1 single-stranded DNA-binding protein YP_001265872.1 586119 D 351746 CDS YP_001265873.1 148545771 5192305 complement(586755..588137) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 588137 5192305 Pput_0519 Pseudomonas putida F1 GntR family transcriptional regulator YP_001265873.1 586755 R 351746 CDS YP_001265874.1 148545772 5190842 588327..589124 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 589124 5190842 Pput_0520 Pseudomonas putida F1 hypothetical protein YP_001265874.1 588327 D 351746 CDS YP_001265875.1 148545773 5190843 589146..589907 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 589907 5190843 Pput_0521 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001265875.1 589146 D 351746 CDS YP_001265876.1 148545774 5193282 590055..590645 1 NC_009512.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase Fe4S4 region 590645 5193282 Pput_0522 Pseudomonas putida F1 molybdopterin oxidoreductase Fe4S4 region YP_001265876.1 590055 D 351746 CDS YP_001265877.1 148545775 5193283 590658..593123 1 NC_009512.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 593123 5193283 Pput_0523 Pseudomonas putida F1 formate dehydrogenase subunit alpha YP_001265877.1 590658 D 351746 CDS YP_001265878.1 148545776 5190178 593123..594073 1 NC_009512.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Formate dehydrogenase, transmembrane; formate dehydrogenase subunit beta 594073 5190178 Pput_0524 Pseudomonas putida F1 formate dehydrogenase subunit beta YP_001265878.1 593123 D 351746 CDS YP_001265879.1 148545777 5190179 594070..594726 1 NC_009512.1 TIGRFAM: formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 594726 5190179 Pput_0525 Pseudomonas putida F1 formate dehydrogenase subunit gamma YP_001265879.1 594070 D 351746 CDS YP_001265880.1 148545778 5193330 594731..595657 1 NC_009512.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; formate dehydrogenase accessory protein FdhE 595657 5193330 Pput_0526 Pseudomonas putida F1 formate dehydrogenase accessory protein FdhE YP_001265880.1 594731 D 351746 CDS YP_001265881.1 148545779 5193331 595797..597224 1 NC_009512.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 597224 5193331 Pput_0527 Pseudomonas putida F1 selenocysteine synthase YP_001265881.1 595797 D 351746 CDS YP_001265882.1 148545780 5193980 597221..599143 1 NC_009512.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; Elongation factor SelB, winged helix 2; Elongation factor SelB, winged helix 3; selenocysteine-specific translation elongation factor 599143 5193980 Pput_0528 Pseudomonas putida F1 selenocysteine-specific translation elongation factor YP_001265882.1 597221 D 351746 CDS YP_001265883.1 148545781 5193981 complement(599352..600350) 1 NC_009512.1 PFAM: Asparaginase/glutaminase; asparaginase 600350 5193981 Pput_0529 Pseudomonas putida F1 asparaginase YP_001265883.1 599352 R 351746 CDS YP_001265884.1 148545782 5190226 complement(600414..601856) 1 NC_009512.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein 601856 5190226 Pput_0530 Pseudomonas putida F1 amino acid carrier protein YP_001265884.1 600414 R 351746 CDS YP_001265885.1 148545783 5190227 602035..602844 1 NC_009512.1 Cro/CI family transcriptional regulator 602844 5190227 Pput_0531 Pseudomonas putida F1 Cro/CI family transcriptional regulator YP_001265885.1 602035 D 351746 CDS YP_001265886.1 148545784 5193776 complement(602856..603296) 1 NC_009512.1 hypothetical protein 603296 5193776 Pput_0532 Pseudomonas putida F1 hypothetical protein YP_001265886.1 602856 R 351746 CDS YP_001265887.1 148545785 5192787 604911..605795 1 NC_009512.1 PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 605795 5192787 Pput_0535 Pseudomonas putida F1 dTDP-4-dehydrorhamnose reductase YP_001265887.1 604911 D 351746 CDS YP_001265888.1 148545786 5192937 605788..606720 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; NAD-dependent epimerase/dehydratase 606720 5192937 Pput_0536 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001265888.1 605788 D 351746 CDS YP_001265889.1 148545787 5192938 complement(606751..607194) 1 NC_009512.1 PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator 607194 5192938 Pput_0537 Pseudomonas putida F1 HxlR family transcriptional regulator YP_001265889.1 606751 R 351746 CDS YP_001265890.1 148545788 5191284 607298..608503 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 608503 5191284 Pput_0538 Pseudomonas putida F1 major facilitator superfamily transporter YP_001265890.1 607298 D 351746 CDS YP_001265891.1 148545789 5191285 complement(608491..609174) 1 NC_009512.1 PFAM: OmpW family protein; OmpW family protein 609174 5191285 Pput_0539 Pseudomonas putida F1 OmpW family protein YP_001265891.1 608491 R 351746 CDS YP_001265892.1 148545790 5195473 complement(609284..609817) 1 NC_009512.1 hypothetical protein 609817 5195473 Pput_0540 Pseudomonas putida F1 hypothetical protein YP_001265892.1 609284 R 351746 CDS YP_001265893.1 148545791 5195474 complement(609923..611188) 1 NC_009512.1 PFAM: protein of unknown function DUF214; hypothetical protein 611188 5195474 Pput_0541 Pseudomonas putida F1 hypothetical protein YP_001265893.1 609923 R 351746 CDS YP_001265894.1 148545792 5193305 complement(611188..611898) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 611898 5193305 Pput_0542 Pseudomonas putida F1 ABC transporter-like protein YP_001265894.1 611188 R 351746 CDS YP_001265895.1 148545793 5193306 complement(611899..612480) 1 NC_009512.1 hypothetical protein 612480 5193306 Pput_0543 Pseudomonas putida F1 hypothetical protein YP_001265895.1 611899 R 351746 CDS YP_001265896.1 148545794 5195153 612611..612955 1 NC_009512.1 hypothetical protein 612955 5195153 Pput_0544 Pseudomonas putida F1 hypothetical protein YP_001265896.1 612611 D 351746 CDS YP_001265897.1 148545795 5195154 complement(613104..613976) 1 NC_009512.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 613976 5195154 Pput_0545 Pseudomonas putida F1 thioredoxin YP_001265897.1 613104 R 351746 CDS YP_001265898.1 148545796 5195280 complement(614008..614664) 1 NC_009512.1 PFAM: methyltransferase small; Methyltransferase type 12; type 12 methyltransferase 614664 5195280 Pput_0546 Pseudomonas putida F1 type 12 methyltransferase YP_001265898.1 614008 R 351746 CDS YP_001265899.1 148545797 5195281 complement(614668..615144) 1 NC_009512.1 hypothetical protein 615144 5195281 Pput_0547 Pseudomonas putida F1 hypothetical protein YP_001265899.1 614668 R 351746 CDS YP_001265900.1 148545798 5190180 615221..615685 1 NC_009512.1 PFAM: ATP-cone domain protein; transcriptional regulator NrdR 615685 nrdR 5190180 nrdR Pseudomonas putida F1 transcriptional regulator NrdR YP_001265900.1 615221 D 351746 CDS YP_001265901.1 148545799 5190181 615688..616818 1 NC_009512.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 616818 5190181 Pput_0549 Pseudomonas putida F1 riboflavin biosynthesis protein RibD YP_001265901.1 615688 D 351746 CDS YP_001265902.1 148545800 5190871 616861..617526 1 NC_009512.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 617526 5190871 Pput_0550 Pseudomonas putida F1 riboflavin synthase subunit alpha YP_001265902.1 616861 D 351746 CDS YP_001265903.1 148545801 5190872 617545..618636 1 NC_009512.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 618636 5190872 Pput_0551 Pseudomonas putida F1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001265903.1 617545 D 351746 CDS YP_001265904.1 148545802 5190191 618728..619204 1 NC_009512.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 619204 ribH 5190191 ribH Pseudomonas putida F1 6,7-dimethyl-8-ribityllumazine synthase YP_001265904.1 618728 D 351746 CDS YP_001265905.1 148545803 5190192 619201..619701 1 NC_009512.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 619701 nusB 5190192 nusB Pseudomonas putida F1 transcription antitermination protein NusB YP_001265905.1 619201 D 351746 CDS YP_001265906.1 148545804 5190378 619720..620688 1 NC_009512.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 620688 5190378 Pput_0554 Pseudomonas putida F1 thiamine monophosphate kinase YP_001265906.1 619720 D 351746 CDS YP_001265907.1 148545805 5191360 620685..621188 1 NC_009512.1 PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 621188 5191360 Pput_0555 Pseudomonas putida F1 phosphatidylglycerophosphatase A YP_001265907.1 620685 D 351746 CDS YP_001265908.1 148545806 5191361 621205..621948 1 NC_009512.1 hypothetical protein 621948 5191361 Pput_0556 Pseudomonas putida F1 hypothetical protein YP_001265908.1 621205 D 351746 CDS YP_001265909.1 148545807 5190578 622130..622747 1 NC_009512.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 622747 ribA 5190578 ribA Pseudomonas putida F1 GTP cyclohydrolase II YP_001265909.1 622130 D 351746 CDS YP_001265910.1 148545808 5190579 622744..623163 1 NC_009512.1 hypothetical protein 623163 5190579 Pput_0558 Pseudomonas putida F1 hypothetical protein YP_001265910.1 622744 D 351746 CDS YP_001265911.1 148545809 5192899 623163..623975 1 NC_009512.1 PFAM: periplasmic binding protein; periplasmic binding protein 623975 5192899 Pput_0559 Pseudomonas putida F1 periplasmic binding protein YP_001265911.1 623163 D 351746 CDS YP_001265912.1 148545810 5192900 complement(623953..625824) 1 NC_009512.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug 625824 5192900 Pput_0560 Pseudomonas putida F1 TonB-dependent receptor, plug YP_001265912.1 623953 R 351746 CDS YP_001265913.1 148545811 5192259 complement(626172..628067) 1 NC_009512.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 628067 5192259 Pput_0561 Pseudomonas putida F1 1-deoxy-D-xylulose-5-phosphate synthase YP_001265913.1 626172 R 351746 CDS YP_001265914.1 148545812 5192260 complement(628245..629132) 1 NC_009512.1 PFAM: Polyprenyl synthetase; polyprenyl synthetase 629132 5192260 Pput_0562 Pseudomonas putida F1 polyprenyl synthetase YP_001265914.1 628245 R 351746 CDS YP_001265915.1 148545813 5191488 complement(629129..629371) 1 NC_009512.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 629371 5191488 Pput_0563 Pseudomonas putida F1 exodeoxyribonuclease VII small subunit YP_001265915.1 629129 R 351746 CDS YP_001265916.1 148545814 5191489 complement(629620..630270) 1 NC_009512.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 630270 ribB 5191489 ribB Pseudomonas putida F1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001265916.1 629620 R 351746 CDS YP_001265917.1 148545815 5191486 630642..631622 1 NC_009512.1 PFAM: Zeta toxin family protein; zeta toxin family protein 631622 5191486 Pput_0565 Pseudomonas putida F1 zeta toxin family protein YP_001265917.1 630642 D 351746 CDS YP_001265918.1 148545816 5191487 complement(631644..632537) 1 NC_009512.1 PFAM: putative esterase; putative esterase 632537 5191487 Pput_0566 Pseudomonas putida F1 putative esterase YP_001265918.1 631644 R 351746 CDS YP_001265919.1 148545817 5191755 complement(632638..633966) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 633966 5191755 Pput_0567 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001265919.1 632638 R 351746 CDS YP_001265920.1 148545818 5191756 complement(633966..634658) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 634658 5191756 Pput_0568 Pseudomonas putida F1 two component transcriptional regulator YP_001265920.1 633966 R 351746 CDS YP_001265921.1 148545819 5191930 634840..637014 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 637014 5191930 Pput_0569 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001265921.1 634840 D 351746 CDS YP_001265922.1 148545820 5191931 complement(637191..637655) 1 NC_009512.1 PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 637655 5191931 Pput_0570 Pseudomonas putida F1 hemerythrin HHE cation binding domain-containing protein YP_001265922.1 637191 R 351746 CDS YP_001265923.1 148545821 5193524 complement(637784..637939) 1 NC_009512.1 hypothetical protein 637939 5193524 Pput_0571 Pseudomonas putida F1 hypothetical protein YP_001265923.1 637784 R 351746 CDS YP_001265924.1 148545822 5193525 complement(638151..638924) 1 NC_009512.1 hypothetical protein 638924 5193525 Pput_0572 Pseudomonas putida F1 hypothetical protein YP_001265924.1 638151 R 351746 CDS YP_001265925.1 148545823 5193562 complement(638934..639869) 1 NC_009512.1 PFAM: copper resistance B precursor; copper resistance B 639869 5193562 Pput_0573 Pseudomonas putida F1 copper resistance B YP_001265925.1 638934 R 351746 CDS YP_001265926.1 148545824 5193563 complement(640191..642050) 1 NC_009512.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; CopA family copper resistance protein 642050 5193563 Pput_0574 Pseudomonas putida F1 CopA family copper resistance protein YP_001265926.1 640191 R 351746 CDS YP_001265927.1 148545825 5193880 complement(642327..642482) 1 NC_009512.1 hypothetical protein 642482 5193880 Pput_0575 Pseudomonas putida F1 hypothetical protein YP_001265927.1 642327 R 351746 CDS YP_001265928.1 148545826 5193962 complement(642990..643691) 1 NC_009512.1 hypothetical protein 643691 5193962 Pput_0576 Pseudomonas putida F1 hypothetical protein YP_001265928.1 642990 R 351746 CDS YP_001265929.1 148545827 5193963 complement(643878..644405) 1 NC_009512.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 644405 5193963 Pput_0577 Pseudomonas putida F1 inorganic pyrophosphatase YP_001265929.1 643878 R 351746 CDS YP_001265930.1 148545828 5193986 complement(644498..645313) 1 NC_009512.1 PFAM: protein of unknown function DUF980; hypothetical protein 645313 5193986 Pput_0578 Pseudomonas putida F1 hypothetical protein YP_001265930.1 644498 R 351746 CDS YP_001265931.1 148545829 5193987 complement(645334..645981) 1 NC_009512.1 PFAM: SNARE associated Golgi protein; hypothetical protein 645981 5193987 Pput_0579 Pseudomonas putida F1 hypothetical protein YP_001265931.1 645334 R 351746 CDS YP_001265932.1 148545830 5194508 complement(646199..646657) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 646657 5194508 Pput_0580 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001265932.1 646199 R 351746 CDS YP_001265933.1 148545831 5194509 complement(646765..647583) 1 NC_009512.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 647583 5194509 Pput_0581 Pseudomonas putida F1 ethanolamine ammonia-lyase small subunit YP_001265933.1 646765 R 351746 CDS YP_001265934.1 148545832 5194265 complement(647592..648986) 1 NC_009512.1 PFAM: Ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 648986 5194265 Pput_0582 Pseudomonas putida F1 ethanolamine ammonia lyase large subunit YP_001265934.1 647592 R 351746 CDS YP_001265935.1 148545833 5194266 complement(649033..650481) 1 NC_009512.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; ethanolamine transporter 650481 5194266 Pput_0583 Pseudomonas putida F1 ethanolamine transporter YP_001265935.1 649033 R 351746 CDS YP_001265936.1 148545834 5195491 complement(650709..652229) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 652229 5195491 Pput_0584 Pseudomonas putida F1 aldehyde dehydrogenase YP_001265936.1 650709 R 351746 CDS YP_001265937.1 148545835 5195492 652484..654499 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 654499 5195492 Pput_0585 Pseudomonas putida F1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001265937.1 652484 D 351746 CDS YP_001265938.1 148545836 5194283 654566..655915 1 NC_009512.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 655915 5194283 Pput_0586 Pseudomonas putida F1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001265938.1 654566 D 351746 CDS YP_001265939.1 148545837 5194284 655912..656541 1 NC_009512.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; aromatic acid decarboxylase 656541 5194284 Pput_0587 Pseudomonas putida F1 aromatic acid decarboxylase YP_001265939.1 655912 D 351746 CDS YP_001265940.1 148545838 5194139 656538..656825 1 NC_009512.1 PFAM: protein of unknown function DUF1375; hypothetical protein 656825 5194139 Pput_0588 Pseudomonas putida F1 hypothetical protein YP_001265940.1 656538 D 351746 CDS YP_001265941.1 148545839 5194140 complement(656932..657576) 1 NC_009512.1 hypothetical protein 657576 5194140 Pput_0589 Pseudomonas putida F1 hypothetical protein YP_001265941.1 656932 R 351746 CDS YP_001265942.1 148545840 5193290 complement(657604..659415) 1 NC_009512.1 PFAM: MORN repeat-containing protein; MORN repeat-containing protein 659415 5193290 Pput_0590 Pseudomonas putida F1 MORN repeat-containing protein YP_001265942.1 657604 R 351746 CDS YP_001265943.1 148545841 5193291 complement(659551..660639) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 660639 5193291 Pput_0591 Pseudomonas putida F1 alcohol dehydrogenase YP_001265943.1 659551 R 351746 CDS YP_001265944.1 148545842 5190913 complement(660668..661774) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; branched-chain alpha-keto acid dehydrogenase subunit E2 661774 5190913 Pput_0592 Pseudomonas putida F1 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001265944.1 660668 R 351746 CDS YP_001265945.1 148545843 5190914 complement(661771..662793) 1 NC_009512.1 PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 662793 5190914 Pput_0593 Pseudomonas putida F1 transketolase, central region YP_001265945.1 661771 R 351746 CDS YP_001265946.1 148545844 5194628 complement(662827..663804) 1 NC_009512.1 PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase 663804 5194628 Pput_0594 Pseudomonas putida F1 pyruvate dehydrogenase YP_001265946.1 662827 R 351746 CDS YP_001265947.1 148545845 5194629 complement(663827..664882) 1 NC_009512.1 PFAM: ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase 664882 5194629 Pput_0595 Pseudomonas putida F1 ATP-NAD/AcoX kinase YP_001265947.1 663827 R 351746 CDS YP_001265948.1 148545846 5195323 665166..667019 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 667019 5195323 Pput_0596 Pseudomonas putida F1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001265948.1 665166 D 351746 CDS YP_001265949.1 148545847 5195235 complement(667213..668568) 1 NC_009512.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 668568 5195235 Pput_0597 Pseudomonas putida F1 acetyl-CoA carboxylase biotin carboxylase subunit YP_001265949.1 667213 R 351746 CDS YP_001265950.1 148545848 5195236 complement(668586..669047) 1 NC_009512.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 669047 5195236 Pput_0598 Pseudomonas putida F1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001265950.1 668586 R 351746 CDS YP_001265951.1 148545849 5194360 complement(669148..669603) 1 NC_009512.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 669603 5194360 Pput_0599 Pseudomonas putida F1 3-dehydroquinate dehydratase YP_001265951.1 669148 R 351746 CDS YP_001265952.1 148545850 5194361 complement(669783..671555) 1 NC_009512.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 671555 dipZ 5194361 dipZ Pseudomonas putida F1 thiol:disulfide interchange protein YP_001265952.1 669783 R 351746 CDS YP_001265953.1 148545851 5194257 complement(671745..673706) 1 NC_009512.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 673706 5194257 Pput_0601 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001265953.1 671745 R 351746 CDS YP_001265954.1 148545852 5194258 complement(673950..675305) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 675305 5194258 Pput_0602 Pseudomonas putida F1 response regulator receiver modulated diguanylate cyclase YP_001265954.1 673950 R 351746 CDS YP_001265955.1 148545853 5194811 675554..676621 1 NC_009512.1 hypothetical protein 676621 5194811 Pput_0603 Pseudomonas putida F1 hypothetical protein YP_001265955.1 675554 D 351746 CDS YP_001265956.1 148545854 5194812 676624..677157 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 677157 5194812 Pput_0604 Pseudomonas putida F1 NUDIX hydrolase YP_001265956.1 676624 D 351746 CDS YP_001265957.1 148545855 5191771 677214..677768 1 NC_009512.1 PFAM: translation initiation factor SUI1; translation initiation factor SUI1 677768 5191771 Pput_0605 Pseudomonas putida F1 translation initiation factor SUI1 YP_001265957.1 677214 D 351746 CDS YP_001265958.1 148545856 5191772 677919..679832 1 NC_009512.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 679832 5191772 Pput_0606 Pseudomonas putida F1 arginine decarboxylase YP_001265958.1 677919 D 351746 CDS YP_001265959.1 148545857 5192862 680003..680458 1 NC_009512.1 PFAM: protein of unknown function DUF1568; hypothetical protein 680458 5192862 Pput_0607 Pseudomonas putida F1 hypothetical protein YP_001265959.1 680003 D 351746 CDS YP_001265960.1 148545858 5192863 complement(680626..681963) 1 NC_009512.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 681963 5192863 Pput_0608 Pseudomonas putida F1 MATE efflux family protein YP_001265960.1 680626 R 351746 CDS YP_001265961.1 148545859 5191304 682243..687144 1 NC_009512.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin domain-containing protein 687144 5191304 Pput_0609 Pseudomonas putida F1 alpha-2-macroglobulin domain-containing protein YP_001265961.1 682243 D 351746 CDS YP_001265962.1 148545860 5191305 complement(687296..687589) 1 NC_009512.1 hypothetical protein 687589 5191305 Pput_0610 Pseudomonas putida F1 hypothetical protein YP_001265962.1 687296 R 351746 CDS YP_001265963.1 148545861 5191061 687667..690021 1 NC_009512.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 690021 5191061 Pput_0611 Pseudomonas putida F1 penicillin-binding protein 1C YP_001265963.1 687667 D 351746 CDS YP_001265964.1 148545862 5191062 690114..691778 1 NC_009512.1 PFAM: Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 691778 5191062 Pput_0612 Pseudomonas putida F1 polypeptide-transport-associated domain-containing protein YP_001265964.1 690114 D 351746 CDS YP_001265965.1 148545863 5193047 complement(691853..692629) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 692629 5193047 Pput_0613 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001265965.1 691853 R 351746 CDS YP_001265966.1 148545864 5193048 complement(692749..693219) 1 NC_009512.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV 693219 5193048 Pput_0614 Pseudomonas putida F1 peptidase A24A, prepilin type IV YP_001265966.1 692749 R 351746 CDS YP_001265967.1 148545865 5192453 complement(693524..694093) 1 NC_009512.1 hypothetical protein 694093 5192453 Pput_0615 Pseudomonas putida F1 hypothetical protein YP_001265967.1 693524 R 351746 CDS YP_001265968.1 148545866 5192454 complement(694113..694748) 1 NC_009512.1 hypothetical protein 694748 5192454 Pput_0616 Pseudomonas putida F1 hypothetical protein YP_001265968.1 694113 R 351746 CDS YP_001265969.1 148545867 5194448 complement(694771..695520) 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 695520 5194448 Pput_0617 Pseudomonas putida F1 type 11 methyltransferase YP_001265969.1 694771 R 351746 CDS YP_001265970.1 148545868 5195477 complement(695517..695822) 1 NC_009512.1 hypothetical protein 695822 5195477 Pput_0618 Pseudomonas putida F1 hypothetical protein YP_001265970.1 695517 R 351746 CDS YP_001265971.1 148545869 5195478 complement(695901..696752) 1 NC_009512.1 PFAM: MaoC domain protein dehydratase; dehydratase 696752 5195478 Pput_0619 Pseudomonas putida F1 dehydratase YP_001265971.1 695901 R 351746 CDS YP_001265972.1 148545870 5190195 complement(696755..698107) 1 NC_009512.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 698107 fabG 5190195 fabG Pseudomonas putida F1 3-ketoacyl-ACP reductase YP_001265972.1 696755 R 351746 CDS YP_001265973.1 148545871 5190196 698225..699502 1 NC_009512.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 699502 5190196 Pput_0621 Pseudomonas putida F1 acetyl-CoA acetyltransferase YP_001265973.1 698225 D 351746 CDS YP_001265974.1 148545872 5190750 699592..700371 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 700371 5190750 Pput_0622 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001265974.1 699592 D 351746 CDS YP_001265975.1 148545873 5190751 complement(700437..702380) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 702380 5190751 Pput_0623 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001265975.1 700437 R 351746 CDS YP_001265976.1 148545874 5192056 complement(702548..702958) 1 NC_009512.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 702958 5192056 Pput_0624 Pseudomonas putida F1 MerR family transcriptional regulator YP_001265976.1 702548 R 351746 CDS YP_001265977.1 148545875 5192057 complement(702955..705354) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 705354 5192057 Pput_0625 Pseudomonas putida F1 heavy metal translocating P-type ATPase YP_001265977.1 702955 R 351746 CDS YP_001265978.1 148545876 5192171 complement(705407..705793) 1 NC_009512.1 hypothetical protein 705793 5192171 Pput_0626 Pseudomonas putida F1 hypothetical protein YP_001265978.1 705407 R 351746 CDS YP_001265979.1 148545877 5192172 705938..706135 1 NC_009512.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 706135 5192172 Pput_0627 Pseudomonas putida F1 heavy metal transport/detoxification protein YP_001265979.1 705938 D 351746 CDS YP_001265980.1 148545878 5190655 706243..707424 1 NC_009512.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 707424 5190655 Pput_0628 Pseudomonas putida F1 Bcr/CflA subfamily drug resistance transporter YP_001265980.1 706243 D 351746 CDS YP_001265981.1 148545879 5190656 707665..707775 1 NC_009512.1 hypothetical protein 707775 5190656 Pput_0629 Pseudomonas putida F1 hypothetical protein YP_001265981.1 707665 D 351746 CDS YP_001265982.1 148545880 5190702 708060..708773 1 NC_009512.1 SMART: regulatory protein, ArsR; regulatory protein ArsR 708773 5190702 Pput_0630 Pseudomonas putida F1 regulatory protein ArsR YP_001265982.1 708060 D 351746 CDS YP_001265983.1 148545881 5190703 complement(708794..709750) 1 NC_009512.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 709750 5190703 Pput_0631 Pseudomonas putida F1 adenosine deaminase YP_001265983.1 708794 R 351746 CDS YP_001265984.1 148545882 5191472 complement(709827..710513) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 710513 5191472 Pput_0632 Pseudomonas putida F1 short chain dehydrogenase YP_001265984.1 709827 R 351746 CDS YP_001265985.1 148545883 5191473 complement(710882..711466) 1 NC_009512.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; hypothetical protein 711466 5191473 Pput_0633 Pseudomonas putida F1 hypothetical protein YP_001265985.1 710882 R 351746 CDS YP_001265986.1 148545884 5191590 complement(711476..712138) 1 NC_009512.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 712138 5191590 Pput_0634 Pseudomonas putida F1 TetR family transcriptional regulator YP_001265986.1 711476 R 351746 CDS YP_001265987.1 148545885 5191591 complement(712229..713146) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 713146 5191591 Pput_0635 Pseudomonas putida F1 LysR family transcriptional regulator YP_001265987.1 712229 R 351746 CDS YP_001265988.1 148545886 5193741 713265..714611 1 NC_009512.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 714611 5193741 Pput_0636 Pseudomonas putida F1 beta alanine--pyruvate transaminase YP_001265988.1 713265 D 351746 CDS YP_001265989.1 148545887 5193742 714685..716178 1 NC_009512.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 716178 5193742 Pput_0637 Pseudomonas putida F1 methylmalonate-semialdehyde dehydrogenase YP_001265989.1 714685 D 351746 CDS YP_001265990.1 148545888 5192513 722388..723047 1 NC_009512.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 723047 5192513 Pput_0638 Pseudomonas putida F1 paraquat-inducible protein A YP_001265990.1 722388 D 351746 CDS YP_001265991.1 148545889 5193692 723034..723657 1 NC_009512.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 723657 5193692 Pput_0639 Pseudomonas putida F1 paraquat-inducible protein A YP_001265991.1 723034 D 351746 CDS YP_001265992.1 148545890 5193693 723641..725950 1 NC_009512.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 725950 5193693 Pput_0640 Pseudomonas putida F1 hypothetical protein YP_001265992.1 723641 D 351746 CDS YP_001265993.1 148545891 5191853 complement(726185..726463) 1 NC_009512.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 726463 rpsT 5191853 rpsT Pseudomonas putida F1 30S ribosomal protein S20 YP_001265993.1 726185 R 351746 CDS YP_001265994.1 148545892 5191854 726714..728252 1 NC_009512.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; integral membrane protein MviN 728252 5191854 Pput_0642 Pseudomonas putida F1 integral membrane protein MviN YP_001265994.1 726714 D 351746 CDS YP_001265995.1 148545893 5190471 728353..729321 1 NC_009512.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 729321 5190471 Pput_0643 Pseudomonas putida F1 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001265995.1 728353 D 351746 CDS YP_001265996.1 148545894 5190472 729318..732149 1 NC_009512.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 732149 ileS 5190472 ileS Pseudomonas putida F1 isoleucyl-tRNA synthetase YP_001265996.1 729318 D 351746 CDS YP_001265997.1 148545895 5190535 732142..732657 1 NC_009512.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 732657 lspA 5190535 lspA Pseudomonas putida F1 lipoprotein signal peptidase YP_001265997.1 732142 D 351746 CDS YP_001265998.1 148545896 5190536 732650..733087 1 NC_009512.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 733087 5190536 Pput_0646 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001265998.1 732650 D 351746 CDS YP_001265999.1 148545897 5191177 733102..734049 1 NC_009512.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 734049 ispH 5191177 ispH Pseudomonas putida F1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001265999.1 733102 D 351746 CDS YP_001266000.1 148545898 5191178 complement(734126..734608) 1 NC_009512.1 hypothetical protein 734608 5191178 Pput_0648 Pseudomonas putida F1 hypothetical protein YP_001266000.1 734126 R 351746 CDS YP_001266001.1 148545899 5192227 734897..735535 1 NC_009512.1 hypothetical protein 735535 5192227 Pput_0649 Pseudomonas putida F1 hypothetical protein YP_001266001.1 734897 D 351746 CDS YP_001266002.1 148545900 5192228 735532..735996 1 NC_009512.1 hypothetical protein 735996 5192228 Pput_0650 Pseudomonas putida F1 hypothetical protein YP_001266002.1 735532 D 351746 CDS YP_001266003.1 148545901 5191793 735998..736387 1 NC_009512.1 type IV pili biogenesis protein PilE 736387 5191793 Pput_0651 Pseudomonas putida F1 type IV pili biogenesis protein PilE YP_001266003.1 735998 D 351746 CDS YP_001266004.1 148545902 5191794 736442..737539 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 737539 5191794 Pput_0652 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266004.1 736442 D 351746 CDS YP_001266005.1 148545903 5193138 complement(737684..739093) 1 NC_009512.1 PFAM: Amidase; putative amidase 739093 5193138 Pput_0653 Pseudomonas putida F1 putative amidase YP_001266005.1 737684 R 351746 CDS YP_001266006.1 148545904 5193139 complement(739095..740372) 1 NC_009512.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 740372 5193139 Pput_0654 Pseudomonas putida F1 allantoate amidohydrolase YP_001266006.1 739095 R 351746 CDS YP_001266007.1 148545905 5190314 complement(740486..741181) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 741181 5190314 Pput_0655 Pseudomonas putida F1 ABC transporter-like protein YP_001266007.1 740486 R 351746 CDS YP_001266008.1 148545906 5190315 complement(741181..741933) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 741933 5190315 Pput_0656 Pseudomonas putida F1 ABC transporter-like protein YP_001266008.1 741181 R 351746 CDS YP_001266009.1 148545907 5193717 complement(741933..742952) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 742952 5193717 Pput_0657 Pseudomonas putida F1 inner-membrane translocator YP_001266009.1 741933 R 351746 CDS YP_001266010.1 148545908 5193718 complement(742954..743814) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 743814 5193718 Pput_0658 Pseudomonas putida F1 inner-membrane translocator YP_001266010.1 742954 R 351746 CDS YP_001266011.1 148545909 5190201 complement(743880..745082) 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 745082 5190201 Pput_0659 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001266011.1 743880 R 351746 CDS YP_001266012.1 148545910 5192811 complement(745173..745952) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; regulatory protein GntR 745952 5192811 Pput_0660 Pseudomonas putida F1 regulatory protein GntR YP_001266012.1 745173 R 351746 CDS YP_001266013.1 148545911 5192812 complement(746204..746434) 1 NC_009512.1 hypothetical protein 746434 5192812 Pput_0661 Pseudomonas putida F1 hypothetical protein YP_001266013.1 746204 R 351746 CDS YP_001266014.1 148545912 5195172 complement(746527..747546) 1 NC_009512.1 DNA uptake lipoprotein-like protein 747546 5195172 Pput_0662 Pseudomonas putida F1 DNA uptake lipoprotein-like protein YP_001266014.1 746527 R 351746 CDS YP_001266015.1 148545913 5195173 747598..748656 1 NC_009512.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 748656 5195173 Pput_0663 Pseudomonas putida F1 RluA family pseudouridine synthase YP_001266015.1 747598 D 351746 CDS YP_001266016.1 148545914 5190182 748653..749393 1 NC_009512.1 PFAM: protein of unknown function DUF152; hypothetical protein 749393 5190182 Pput_0664 Pseudomonas putida F1 hypothetical protein YP_001266016.1 748653 D 351746 CDS YP_001266017.1 148545915 5190183 749644..752208 1 NC_009512.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 752208 5190183 Pput_0665 Pseudomonas putida F1 ATPase YP_001266017.1 749644 D 351746 CDS YP_001266018.1 148545916 5195538 complement(753287..754582) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 754582 5195538 Pput_0666 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001266018.1 753287 R 351746 CDS YP_001266019.1 148545917 5190577 complement(754667..754840) 1 NC_009512.1 hypothetical protein 754840 5190577 Pput_0667 Pseudomonas putida F1 hypothetical protein YP_001266019.1 754667 R 351746 CDS YP_001266020.1 148545918 5191240 complement(754973..755602) 1 NC_009512.1 PFAM: Protein of unknown function DUF1780; hypothetical protein 755602 5191240 Pput_0668 Pseudomonas putida F1 hypothetical protein YP_001266020.1 754973 R 351746 CDS YP_001266021.1 148545919 5191241 complement(755658..756089) 1 NC_009512.1 hypothetical protein 756089 5191241 Pput_0669 Pseudomonas putida F1 hypothetical protein YP_001266021.1 755658 R 351746 CDS YP_001266022.1 148545920 5190324 756095..756883 1 NC_009512.1 hypothetical protein 756883 5190324 Pput_0670 Pseudomonas putida F1 hypothetical protein YP_001266022.1 756095 D 351746 CDS YP_001266023.1 148545921 5190325 complement(757068..757268) 1 NC_009512.1 PFAM: protein of unknown function DUF329; zinc-binding protein 757268 5190325 Pput_0671 Pseudomonas putida F1 zinc-binding protein YP_001266023.1 757068 R 351746 CDS YP_001266024.1 148545922 5191706 complement(757265..757888) 1 NC_009512.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 757888 coaE 5191706 coaE Pseudomonas putida F1 dephospho-CoA kinase YP_001266024.1 757265 R 351746 CDS YP_001266025.1 148545923 5191707 complement(757888..758754) 1 NC_009512.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; prepilin peptidase 758754 5191707 Pput_0673 Pseudomonas putida F1 prepilin peptidase YP_001266025.1 757888 R 351746 CDS YP_001266026.1 148545924 5193309 complement(758757..759965) 1 NC_009512.1 PFAM: type II secretion system protein; type II secretion system protein 759965 5193309 Pput_0674 Pseudomonas putida F1 type II secretion system protein YP_001266026.1 758757 R 351746 CDS YP_001266027.1 148545925 5193310 760182..760592 1 NC_009512.1 PFAM: Fimbrial protein pilin; fimbrial protein pilin 760592 5193310 Pput_0675 Pseudomonas putida F1 fimbrial protein pilin YP_001266027.1 760182 D 351746 CDS YP_001266028.1 148545926 5193922 760961..762145 1 NC_009512.1 PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 762145 5193922 Pput_0676 Pseudomonas putida F1 filamentation induced by cAMP protein fic YP_001266028.1 760961 D 351746 CDS YP_001266029.1 148545927 5195193 764563..765465 1 NC_009512.1 hypothetical protein 765465 5195193 Pput_0680 Pseudomonas putida F1 hypothetical protein YP_001266029.1 764563 D 351746 CDS YP_001266030.1 148545928 5191014 765462..766094 1 NC_009512.1 hypothetical protein 766094 5191014 Pput_0681 Pseudomonas putida F1 hypothetical protein YP_001266030.1 765462 D 351746 CDS YP_001266031.1 148545929 5191015 766285..767151 1 NC_009512.1 hypothetical protein 767151 5191015 Pput_0682 Pseudomonas putida F1 hypothetical protein YP_001266031.1 766285 D 351746 CDS YP_001266032.1 148545930 5194115 complement(768040..768822) 1 NC_009512.1 hypothetical protein 768822 5194115 Pput_0683 Pseudomonas putida F1 hypothetical protein YP_001266032.1 768040 R 351746 CDS YP_001266033.1 148545931 5194580 770447..770674 1 NC_009512.1 hypothetical protein 770674 5194580 Pput_0684 Pseudomonas putida F1 hypothetical protein YP_001266033.1 770447 D 351746 CDS YP_001266034.1 148545932 5194447 complement(770739..772124) 1 NC_009512.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter 772124 5194447 Pput_0685 Pseudomonas putida F1 gluconate transporter YP_001266034.1 770739 R 351746 CDS YP_001266035.1 148545933 5195513 complement(772125..772403) 1 NC_009512.1 hypothetical protein 772403 5195513 Pput_0686 Pseudomonas putida F1 hypothetical protein YP_001266035.1 772125 R 351746 CDS YP_001266036.1 148545934 5195514 772558..773487 1 NC_009512.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 773487 5195514 Pput_0687 Pseudomonas putida F1 malate dehydrogenase YP_001266036.1 772558 D 351746 CDS YP_001266037.1 148545935 5195066 773862..774221 1 NC_009512.1 hypothetical protein 774221 5195066 Pput_0689 Pseudomonas putida F1 hypothetical protein YP_001266037.1 773862 D 351746 CDS YP_001266038.1 148545936 5192027 complement(774283..775104) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 775104 5192027 Pput_0690 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001266038.1 774283 R 351746 CDS YP_001266039.1 148545937 5192929 complement(775101..775922) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 775922 5192929 Pput_0691 Pseudomonas putida F1 extracellular solute-binding protein YP_001266039.1 775101 R 351746 CDS YP_001266040.1 148545938 5192930 775990..776925 1 NC_009512.1 PFAM: homocysteine S-methyltransferase; homocysteine S-methyltransferase 776925 5192930 Pput_0692 Pseudomonas putida F1 homocysteine S-methyltransferase YP_001266040.1 775990 D 351746 CDS YP_001266041.1 148545939 5194544 777093..778364 1 NC_009512.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 778364 5194544 Pput_0693 Pseudomonas putida F1 cystathionine gamma-synthase YP_001266041.1 777093 D 351746 CDS YP_001266042.1 148545940 5194545 778507..779946 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 779946 5194545 Pput_0694 Pseudomonas putida F1 amino acid permease-associated protein YP_001266042.1 778507 D 351746 CDS YP_001266043.1 148545941 5193235 779992..780876 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 780876 5193235 Pput_0695 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266043.1 779992 D 351746 CDS YP_001266044.1 148545942 5193236 780901..782289 1 NC_009512.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 782289 5193236 Pput_0696 Pseudomonas putida F1 threonine synthase YP_001266044.1 780901 D 351746 CDS YP_001266045.1 148545943 5193931 782286..782723 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 782723 5193931 Pput_0697 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001266045.1 782286 D 351746 CDS YP_001266046.1 148545944 5193932 782922..783965 1 NC_009512.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 783965 5193932 Pput_0698 Pseudomonas putida F1 homoserine dehydrogenase YP_001266046.1 782922 D 351746 CDS YP_001266047.1 148545945 5195294 783978..785396 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 785396 5195294 Pput_0699 Pseudomonas putida F1 aldehyde dehydrogenase YP_001266047.1 783978 D 351746 CDS YP_001266048.1 148545946 5195295 785413..785760 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 785760 5195295 Pput_0700 Pseudomonas putida F1 endoribonuclease L-PSP YP_001266048.1 785413 D 351746 CDS YP_001266049.1 148545947 5193073 complement(785789..786742) 1 NC_009512.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 786742 5193073 Pput_0701 Pseudomonas putida F1 bile acid:sodium symporter YP_001266049.1 785789 R 351746 CDS YP_001266050.1 148545948 5193074 complement(787031..788284) 1 NC_009512.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 788284 glyA 5193074 glyA Pseudomonas putida F1 serine hydroxymethyltransferase YP_001266050.1 787031 R 351746 CDS YP_001266051.1 148545949 5190462 complement(788590..792420) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 792420 5190462 Pput_0703 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001266051.1 788590 R 351746 CDS YP_001266052.1 148545950 5190463 792642..793067 1 NC_009512.1 hypothetical protein 793067 5190463 Pput_0704 Pseudomonas putida F1 hypothetical protein YP_001266052.1 792642 D 351746 CDS YP_001266053.1 148545951 5193378 793370..795037 1 NC_009512.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 795037 5193378 Pput_0705 Pseudomonas putida F1 putative ABC transporter ATP-binding protein YP_001266053.1 793370 D 351746 CDS YP_001266054.1 148545952 5195461 795260..796600 1 NC_009512.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 796600 5195461 Pput_0706 Pseudomonas putida F1 glutamate dehydrogenase YP_001266054.1 795260 D 351746 CDS YP_001266055.1 148545953 5195462 complement(796800..797297) 1 NC_009512.1 PFAM: transcription elongation factor GreA/GreB domain protein; GreA/GreB family elongation factor 797297 5195462 Pput_0707 Pseudomonas putida F1 GreA/GreB family elongation factor YP_001266055.1 796800 R 351746 CDS YP_001266056.1 148545954 5195021 complement(797365..797721) 1 NC_009512.1 hypothetical protein 797721 5195021 Pput_0708 Pseudomonas putida F1 hypothetical protein YP_001266056.1 797365 R 351746 CDS YP_001266057.1 148545955 5195022 complement(797937..799790) 1 NC_009512.1 hypothetical protein 799790 5195022 Pput_0709 Pseudomonas putida F1 hypothetical protein YP_001266057.1 797937 R 351746 CDS YP_001266058.1 148545956 5191600 complement(799862..800350) 1 NC_009512.1 hypothetical protein 800350 5191600 Pput_0710 Pseudomonas putida F1 hypothetical protein YP_001266058.1 799862 R 351746 CDS YP_001266059.1 148545957 5191601 800600..803038 1 NC_009512.1 ATP-dependent protease-like protein 803038 5191601 Pput_0711 Pseudomonas putida F1 ATP-dependent protease-like protein YP_001266059.1 800600 D 351746 CDS YP_001266060.1 148545958 5194932 803201..803539 1 NC_009512.1 hypothetical protein 803539 5194932 Pput_0712 Pseudomonas putida F1 hypothetical protein YP_001266060.1 803201 D 351746 CDS YP_001266061.1 148545959 5194933 803729..804217 1 NC_009512.1 PFAM: Uncharacterized protein UPF0114; hypothetical protein 804217 5194933 Pput_0713 Pseudomonas putida F1 hypothetical protein YP_001266061.1 803729 D 351746 CDS YP_001266062.1 148545960 5194949 804435..804740 1 NC_009512.1 hypothetical protein 804740 5194949 Pput_0714 Pseudomonas putida F1 hypothetical protein YP_001266062.1 804435 D 351746 CDS YP_001266063.1 148545961 5194950 804826..805443 1 NC_009512.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 805443 5194950 Pput_0715 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001266063.1 804826 D 351746 CDS YP_001266064.1 148545962 5190302 complement(805470..805715) 1 NC_009512.1 hypothetical protein 805715 5190302 Pput_0716 Pseudomonas putida F1 hypothetical protein YP_001266064.1 805470 R 351746 CDS YP_001266065.1 148545963 5190303 complement(805800..806141) 1 NC_009512.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; alkylphosphonate utilization operon protein PhnA 806141 5190303 Pput_0717 Pseudomonas putida F1 alkylphosphonate utilization operon protein PhnA YP_001266065.1 805800 R 351746 CDS YP_001266066.1 148545964 5195547 complement(806301..807269) 1 NC_009512.1 PFAM: Polyprenyl synthetase; polyprenyl synthetase 807269 5195547 Pput_0718 Pseudomonas putida F1 polyprenyl synthetase YP_001266066.1 806301 R 351746 CDS YP_001266067.1 148545965 5195548 807296..807529 1 NC_009512.1 hypothetical protein 807529 5195548 Pput_0719 Pseudomonas putida F1 hypothetical protein YP_001266067.1 807296 D 351746 CDS YP_001266068.1 148545966 5193317 807514..807828 1 NC_009512.1 PFAM: ribosomal protein L21; 50S ribosomal protein L21 807828 rplU 5193317 rplU Pseudomonas putida F1 50S ribosomal protein L21 YP_001266068.1 807514 D 351746 CDS YP_001266069.1 148545967 5193318 807867..808124 1 NC_009512.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 808124 rpmA 5193318 rpmA Pseudomonas putida F1 50S ribosomal protein L27 YP_001266069.1 807867 D 351746 CDS YP_001266070.1 148545968 5194590 808313..809539 1 NC_009512.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 809539 obgE 5194590 obgE Pseudomonas putida F1 GTPase ObgE YP_001266070.1 808313 D 351746 CDS YP_001266071.1 148545969 5194591 809625..810743 1 NC_009512.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 810743 5194591 Pput_0723 Pseudomonas putida F1 gamma-glutamyl kinase YP_001266071.1 809625 D 351746 CDS YP_001266072.1 148545970 5191268 810740..811201 1 NC_009512.1 PFAM: CreA family protein; CreA family protein 811201 5191268 Pput_0724 Pseudomonas putida F1 CreA family protein YP_001266072.1 810740 D 351746 CDS YP_001266073.1 148545971 5191269 complement(811459..814254) 1 NC_009512.1 hypothetical protein 814254 5191269 Pput_0725 Pseudomonas putida F1 hypothetical protein YP_001266073.1 811459 R 351746 CDS YP_001266074.1 148545972 5193835 complement(814287..814994) 1 NC_009512.1 hypothetical protein 814994 5193835 Pput_0726 Pseudomonas putida F1 hypothetical protein YP_001266074.1 814287 R 351746 CDS YP_001266075.1 148545973 5192225 complement(814984..816318) 1 NC_009512.1 hypothetical protein 816318 5192225 Pput_0727 Pseudomonas putida F1 hypothetical protein YP_001266075.1 814984 R 351746 CDS YP_001266076.1 148545974 5192226 816705..817490 1 NC_009512.1 hypothetical protein 817490 5192226 Pput_0728 Pseudomonas putida F1 hypothetical protein YP_001266076.1 816705 D 351746 CDS YP_001266077.1 148545975 5194822 817487..817942 1 NC_009512.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 817942 5194822 Pput_0729 Pseudomonas putida F1 ribosomal-protein-alanine acetyltransferase YP_001266077.1 817487 D 351746 CDS YP_001266078.1 148545976 5194823 818081..818656 1 NC_009512.1 PFAM: Peptidase M15A; peptidase M15A 818656 5194823 Pput_0730 Pseudomonas putida F1 peptidase M15A YP_001266078.1 818081 D 351746 CDS YP_001266079.1 148545977 5191586 complement(818596..819513) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 819513 5191586 Pput_0731 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266079.1 818596 R 351746 CDS YP_001266080.1 148545978 5191587 819741..820355 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 820355 5191587 Pput_0732 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001266080.1 819741 D 351746 CDS YP_001266081.1 148545979 5195067 complement(820658..821644) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 821644 5195067 Pput_0733 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001266081.1 820658 R 351746 CDS YP_001266082.1 148545980 5194367 821775..822989 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 822989 5194367 Pput_0734 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266082.1 821775 D 351746 CDS YP_001266083.1 148545981 5193604 823314..824471 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 824471 5193604 Pput_0735 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266083.1 823314 D 351746 CDS YP_001266084.1 148545982 5193605 complement(824479..825435) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 825435 5193605 Pput_0736 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001266084.1 824479 R 351746 CDS YP_001266085.1 148545983 5194471 complement(825422..825937) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 825937 5194471 Pput_0737 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001266085.1 825422 R 351746 CDS YP_001266086.1 148545984 5194472 826112..826735 1 NC_009512.1 PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase II 826735 5194472 Pput_0738 Pseudomonas putida F1 DNA-3-methyladenine glycosylase II YP_001266086.1 826112 D 351746 CDS YP_001266087.1 148545985 5192805 826783..827835 1 NC_009512.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 827835 5192805 Pput_0739 Pseudomonas putida F1 methylated-DNA--protein-cysteine methyltransferase YP_001266087.1 826783 D 351746 CDS YP_001266088.1 148545986 5192806 827892..830303 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 830303 5192806 Pput_0740 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001266088.1 827892 D 351746 CDS YP_001266089.1 148545987 5194309 complement(830330..831547) 1 NC_009512.1 PFAM: Egg lysin (Sperm-lysin); hypothetical protein 831547 5194309 Pput_0741 Pseudomonas putida F1 hypothetical protein YP_001266089.1 830330 R 351746 CDS YP_001266090.1 148545988 5194310 complement(832127..833557) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 833557 5194310 Pput_0742 Pseudomonas putida F1 aldehyde dehydrogenase YP_001266090.1 832127 R 351746 CDS YP_001266091.1 148545989 5190316 complement(833571..835070) 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 835070 5190316 Pput_0743 Pseudomonas putida F1 cytosine/purines uracil thiamine allantoin permease YP_001266091.1 833571 R 351746 CDS YP_001266092.1 148545990 5190317 complement(835163..835672) 1 NC_009512.1 hypothetical protein 835672 5190317 Pput_0744 Pseudomonas putida F1 hypothetical protein YP_001266092.1 835163 R 351746 CDS YP_001266093.1 148545991 5192562 835764..836384 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 836384 5192562 Pput_0745 Pseudomonas putida F1 isochorismatase hydrolase YP_001266093.1 835764 D 351746 CDS YP_001266094.1 148545992 5192563 836491..837306 1 NC_009512.1 PFAM: protein of unknown function DUF344; hypothetical protein 837306 5192563 Pput_0746 Pseudomonas putida F1 hypothetical protein YP_001266094.1 836491 D 351746 CDS YP_001266095.1 148545993 5193849 837343..838539 1 NC_009512.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; potassium efflux system protein 838539 5193849 Pput_0747 Pseudomonas putida F1 potassium efflux system protein YP_001266095.1 837343 D 351746 CDS YP_001266096.1 148545994 5192443 838581..839678 1 NC_009512.1 PFAM: protein of unknown function UPF0118; hypothetical protein 839678 5192443 Pput_0748 Pseudomonas putida F1 hypothetical protein YP_001266096.1 838581 D 351746 CDS YP_001266097.1 148545995 5192444 839682..841196 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 841196 5192444 Pput_0749 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001266097.1 839682 D 351746 CDS YP_001266098.1 148545996 5193655 841193..842290 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 842290 5193655 Pput_0750 Pseudomonas putida F1 secretion protein HlyD family protein YP_001266098.1 841193 D 351746 CDS YP_001266099.1 148545997 5193656 842280..843302 1 NC_009512.1 hypothetical protein 843302 5193656 Pput_0751 Pseudomonas putida F1 hypothetical protein YP_001266099.1 842280 D 351746 CDS YP_001266100.1 148545998 5194678 complement(843322..845034) 1 NC_009512.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 845034 5194678 Pput_0752 Pseudomonas putida F1 sulfate transporter YP_001266100.1 843322 R 351746 CDS YP_001266101.1 148545999 5194679 complement(845209..846309) 1 NC_009512.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 846309 5194679 Pput_0753 Pseudomonas putida F1 GTP-dependent nucleic acid-binding protein EngD YP_001266101.1 845209 R 351746 CDS YP_001266102.1 148546000 5192102 complement(846334..846918) 1 NC_009512.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 846918 5192102 Pput_0754 Pseudomonas putida F1 peptidyl-tRNA hydrolase YP_001266102.1 846334 R 351746 CDS YP_001266103.1 148546001 5192103 complement(846998..847591) 1 NC_009512.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 847591 5192103 Pput_0755 Pseudomonas putida F1 50S ribosomal protein L25/general stress protein Ctc YP_001266103.1 846998 R 351746 CDS YP_001266104.1 148546002 5195390 complement(847710..848642) 1 NC_009512.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 848642 5195390 Pput_0756 Pseudomonas putida F1 ribose-phosphate pyrophosphokinase YP_001266104.1 847710 R 351746 CDS YP_001266105.1 148546003 5193036 complement(848795..849655) 1 NC_009512.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 849655 ipk 5193036 ipk Pseudomonas putida F1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001266105.1 848795 R 351746 CDS YP_001266106.1 148546004 5193163 complement(849660..850277) 1 NC_009512.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 850277 lolB 5193163 lolB Pseudomonas putida F1 outer membrane lipoprotein LolB YP_001266106.1 849660 R 351746 CDS YP_001266107.1 148546005 5193164 complement(850282..852003) 1 NC_009512.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 852003 5193164 Pput_0759 Pseudomonas putida F1 hypothetical protein YP_001266107.1 850282 R 351746 CDS YP_001266108.1 148546006 5195078 853706..854983 1 NC_009512.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 854983 hemA 5195078 hemA Pseudomonas putida F1 glutamyl-tRNA reductase YP_001266108.1 853706 D 351746 CDS YP_001266109.1 148546007 5195079 854980..856062 1 NC_009512.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 856062 prfA 5195079 prfA Pseudomonas putida F1 peptide chain release factor 1 YP_001266109.1 854980 D 351746 CDS YP_001266110.1 148546008 5194318 856062..856892 1 NC_009512.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; HemK family modification methylase 856892 5194318 Pput_0762 Pseudomonas putida F1 HemK family modification methylase YP_001266110.1 856062 D 351746 CDS YP_001266111.1 148546009 5194319 856886..857641 1 NC_009512.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 857641 5194319 Pput_0763 Pseudomonas putida F1 molybdopterin biosynthesis protein MoeB YP_001266111.1 856886 D 351746 CDS YP_001266112.1 148546010 5190639 857634..858431 1 NC_009512.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 858431 5190639 Pput_0764 Pseudomonas putida F1 glutamate racemase YP_001266112.1 857634 D 351746 CDS YP_001266113.1 148546011 5190640 858592..859056 1 NC_009512.1 hypothetical protein 859056 5190640 Pput_0765 Pseudomonas putida F1 hypothetical protein YP_001266113.1 858592 D 351746 CDS YP_001266114.1 148546012 5191084 complement(859180..859809) 1 NC_009512.1 hypothetical protein 859809 5191084 Pput_0766 Pseudomonas putida F1 hypothetical protein YP_001266114.1 859180 R 351746 CDS YP_001266115.1 148546013 5191085 complement(859890..861317) 1 NC_009512.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 861317 5191085 Pput_0767 Pseudomonas putida F1 deoxyribodipyrimidine photo-lyase YP_001266115.1 859890 R 351746 CDS YP_001266116.1 148546014 5190609 complement(861308..862207) 1 NC_009512.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 862207 5190609 Pput_0768 Pseudomonas putida F1 MerR family transcriptional regulator YP_001266116.1 861308 R 351746 CDS YP_001266117.1 148546015 5190610 complement(862197..863165) 1 NC_009512.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; hypothetical protein 863165 5190610 Pput_0769 Pseudomonas putida F1 hypothetical protein YP_001266117.1 862197 R 351746 CDS YP_001266118.1 148546016 5192202 complement(863269..864255) 1 NC_009512.1 NAD/FAD-dependent oxidoreductase-like protein 864255 5192202 Pput_0770 Pseudomonas putida F1 NAD/FAD-dependent oxidoreductase-like protein YP_001266118.1 863269 R 351746 CDS YP_001266119.1 148546017 5192203 864443..865348 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase 865348 5192203 Pput_0771 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001266119.1 864443 D 351746 CDS YP_001266120.1 148546018 5191137 865362..866378 1 NC_009512.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 866378 hemH 5191137 hemH Pseudomonas putida F1 ferrochelatase YP_001266120.1 865362 D 351746 CDS YP_001266121.1 148546019 5191276 complement(866414..867679) 1 NC_009512.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 867679 5191276 Pput_0773 Pseudomonas putida F1 uracil-xanthine permease YP_001266121.1 866414 R 351746 CDS YP_001266122.1 148546020 5191277 complement(867682..868320) 1 NC_009512.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 868320 upp 5191277 upp Pseudomonas putida F1 uracil phosphoribosyltransferase YP_001266122.1 867682 R 351746 CDS YP_001266123.1 148546021 5193260 868483..869040 1 NC_009512.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 869040 5193260 Pput_0775 Pseudomonas putida F1 hypoxanthine-guanine phosphoribosyltransferase YP_001266123.1 868483 D 351746 CDS YP_001266124.1 148546022 5193261 869043..869516 1 NC_009512.1 hypothetical protein 869516 5193261 Pput_0776 Pseudomonas putida F1 hypothetical protein YP_001266124.1 869043 D 351746 CDS YP_001266125.1 148546023 5195344 869568..870038 1 NC_009512.1 hypothetical protein 870038 5195344 Pput_0777 Pseudomonas putida F1 hypothetical protein YP_001266125.1 869568 D 351746 CDS YP_001266126.1 148546024 5195345 870107..870397 1 NC_009512.1 hypothetical protein 870397 5195345 Pput_0778 Pseudomonas putida F1 hypothetical protein YP_001266126.1 870107 D 351746 CDS YP_001266127.1 148546025 5190485 complement(870563..872071) 1 NC_009512.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 872071 5190485 Pput_0779 Pseudomonas putida F1 malate:quinone oxidoreductase YP_001266127.1 870563 R 351746 CDS YP_001266128.1 148546026 5190486 873052..873636 1 NC_009512.1 hypothetical protein 873636 5190486 Pput_0780 Pseudomonas putida F1 hypothetical protein YP_001266128.1 873052 D 351746 CDS YP_001266129.1 148546027 5193899 complement(873711..873917) 1 NC_009512.1 hypothetical protein 873917 5193899 Pput_0781 Pseudomonas putida F1 hypothetical protein YP_001266129.1 873711 R 351746 CDS YP_001266130.1 148546028 5193900 874078..874338 1 NC_009512.1 hypothetical protein 874338 5193900 Pput_0782 Pseudomonas putida F1 hypothetical protein YP_001266130.1 874078 D 351746 CDS YP_001266131.1 148546029 5193516 complement(874462..875628) 1 NC_009512.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 875628 5193516 Pput_0783 Pseudomonas putida F1 phospholipid/glycerol acyltransferase YP_001266131.1 874462 R 351746 CDS YP_001266132.1 148546030 5193517 875754..875939 1 NC_009512.1 hypothetical protein 875939 5193517 Pput_0784 Pseudomonas putida F1 hypothetical protein YP_001266132.1 875754 D 351746 CDS YP_001266133.1 148546031 5194194 875939..876199 1 NC_009512.1 hypothetical protein 876199 5194194 Pput_0785 Pseudomonas putida F1 hypothetical protein YP_001266133.1 875939 D 351746 CDS YP_001266134.1 148546032 5194195 876215..876835 1 NC_009512.1 PFAM: protein of unknown function DUF159; hypothetical protein 876835 5194195 Pput_0786 Pseudomonas putida F1 hypothetical protein YP_001266134.1 876215 D 351746 CDS YP_001266135.1 148546033 5195228 877063..877881 1 NC_009512.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 877881 5195228 Pput_0787 Pseudomonas putida F1 peptidase M48, Ste24p YP_001266135.1 877063 D 351746 CDS YP_001266136.1 148546034 5195229 complement(877925..878509) 1 NC_009512.1 PFAM: protein of unknown function UPF0016; hypothetical protein 878509 5195229 Pput_0788 Pseudomonas putida F1 hypothetical protein YP_001266136.1 877925 R 351746 CDS YP_001266137.1 148546035 5195410 complement(878778..879776) 1 NC_009512.1 PFAM: methyltransferase small; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; rRNA (guanine-N(2)-)-methyltransferase 879776 5195410 Pput_0789 Pseudomonas putida F1 rRNA (guanine-N(2)-)-methyltransferase YP_001266137.1 878778 R 351746 CDS YP_001266138.1 148546036 5195411 complement(879831..880796) 1 NC_009512.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 880796 5195411 Pput_0790 Pseudomonas putida F1 glycerate dehydrogenase YP_001266138.1 879831 R 351746 CDS YP_001266139.1 148546037 5190890 881090..882772 1 NC_009512.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 882772 5190890 Pput_0791 Pseudomonas putida F1 long-chain-fatty-acid--CoA ligase YP_001266139.1 881090 D 351746 CDS YP_001266140.1 148546038 5190891 883104..884990 1 NC_009512.1 PFAM: protein of unknown function DUF1302; hypothetical protein 884990 5190891 Pput_0792 Pseudomonas putida F1 hypothetical protein YP_001266140.1 883104 D 351746 CDS YP_001266141.1 148546039 5190365 885016..886380 1 NC_009512.1 PFAM: protein of unknown function DUF1329; hypothetical protein 886380 5190365 Pput_0793 Pseudomonas putida F1 hypothetical protein YP_001266141.1 885016 D 351746 CDS YP_001266142.1 148546040 5190366 886707..889424 1 NC_009512.1 PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; regulatory protein LuxR 889424 5190366 Pput_0794 Pseudomonas putida F1 regulatory protein LuxR YP_001266142.1 886707 D 351746 CDS YP_001266143.1 148546041 5192752 889584..891191 1 NC_009512.1 PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; response regulator receiver protein 891191 5192752 Pput_0795 Pseudomonas putida F1 response regulator receiver protein YP_001266143.1 889584 D 351746 CDS YP_001266144.1 148546042 5192753 891188..891880 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase 891880 5192753 Pput_0796 Pseudomonas putida F1 histidine kinase YP_001266144.1 891188 D 351746 CDS YP_001266145.1 148546043 5192834 891935..892651 1 NC_009512.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 892651 5192834 Pput_0797 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001266145.1 891935 D 351746 CDS YP_001266146.1 148546044 5190704 892737..893480 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 893480 5190704 Pput_0798 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266146.1 892737 D 351746 CDS YP_001266147.1 148546045 5190705 complement(893560..895647) 1 NC_009512.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 895647 5190705 Pput_0799 Pseudomonas putida F1 phosphate acetyltransferase YP_001266147.1 893560 R 351746 CDS YP_001266148.1 148546046 5190692 complement(895679..895843) 1 NC_009512.1 hypothetical protein 895843 5190692 Pput_0800 Pseudomonas putida F1 hypothetical protein YP_001266148.1 895679 R 351746 CDS YP_001266149.1 148546047 5190693 895980..896465 1 NC_009512.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 896465 5190693 Pput_0801 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001266149.1 895980 D 351746 CDS YP_001266150.1 148546048 5193787 896611..897093 1 NC_009512.1 PFAM: glutathione peroxidase; peroxiredoxin 897093 5193787 Pput_0802 Pseudomonas putida F1 peroxiredoxin YP_001266150.1 896611 D 351746 CDS YP_001266151.1 148546049 5193788 complement(897158..898348) 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 898348 5193788 Pput_0803 Pseudomonas putida F1 group 1 glycosyl transferase YP_001266151.1 897158 R 351746 CDS YP_001266152.1 148546050 5195346 898527..899843 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 899843 5195346 Pput_0804 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001266152.1 898527 D 351746 CDS YP_001266153.1 148546051 5195347 900069..901406 1 NC_009512.1 hypothetical protein 901406 5195347 Pput_0805 Pseudomonas putida F1 hypothetical protein YP_001266153.1 900069 D 351746 CDS YP_001266154.1 148546052 5195130 901422..902045 1 NC_009512.1 PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein 902045 5195130 Pput_0806 Pseudomonas putida F1 GAD-like protein YP_001266154.1 901422 D 351746 CDS YP_001266155.1 148546053 5194100 complement(902364..903092) 1 NC_009512.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 903092 5194100 Pput_0808 Pseudomonas putida F1 putative sulfate transport protein CysZ YP_001266155.1 902364 R 351746 CDS YP_001266156.1 148546054 5195200 903423..904385 1 NC_009512.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 904385 5195200 Pput_0809 Pseudomonas putida F1 thioredoxin reductase YP_001266156.1 903423 D 351746 CDS YP_001266157.1 148546055 5195201 complement(904461..905309) 1 NC_009512.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 905309 5195201 Pput_0810 Pseudomonas putida F1 nicotinate-nucleotide pyrophosphorylase YP_001266157.1 904461 R 351746 CDS YP_001266158.1 148546056 5194530 905553..907706 1 NC_009512.1 PFAM: protein of unknown function DUF1631; hypothetical protein 907706 5194530 Pput_0811 Pseudomonas putida F1 hypothetical protein YP_001266158.1 905553 D 351746 CDS YP_001266159.1 148546057 5194531 907795..908367 1 NC_009512.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 908367 5194531 Pput_0812 Pseudomonas putida F1 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001266159.1 907795 D 351746 CDS YP_001266160.1 148546058 5190355 908364..909194 1 NC_009512.1 signaling modulator of AmpD, AmpE 909194 5190355 Pput_0813 Pseudomonas putida F1 signaling modulator of AmpD, AmpE YP_001266160.1 908364 D 351746 CDS YP_001266161.1 148546059 5190356 complement(909239..910015) 1 NC_009512.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 910015 5190356 Pput_0814 Pseudomonas putida F1 TatD family hydrolase YP_001266161.1 909239 R 351746 CDS YP_001266162.1 148546060 5194016 complement(910018..911082) 1 NC_009512.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 911082 5194016 Pput_0815 Pseudomonas putida F1 DNA-binding transcriptional regulator FruR YP_001266162.1 910018 R 351746 CDS YP_001266163.1 148546061 5194017 911298..914150 1 NC_009512.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase 914150 5194017 Pput_0816 Pseudomonas putida F1 phosphoenolpyruvate-protein phosphotransferase YP_001266163.1 911298 D 351746 CDS YP_001266164.1 148546062 5190306 914151..915098 1 NC_009512.1 PFAM: PfkB domain protein; 1-phosphofructokinase 915098 5190306 Pput_0817 Pseudomonas putida F1 1-phosphofructokinase YP_001266164.1 914151 D 351746 CDS YP_001266165.1 148546063 5190307 915095..916837 1 NC_009512.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 916837 5190307 Pput_0818 Pseudomonas putida F1 PTS system fructose subfamily transporter subunit IIC YP_001266165.1 915095 D 351746 CDS YP_001266166.1 148546064 5191598 complement(917032..917253) 1 NC_009512.1 hypothetical protein 917253 5191598 Pput_0819 Pseudomonas putida F1 hypothetical protein YP_001266166.1 917032 R 351746 CDS YP_001266167.1 148546065 5191599 917455..917931 1 NC_009512.1 hypothetical protein 917931 5191599 Pput_0820 Pseudomonas putida F1 hypothetical protein YP_001266167.1 917455 D 351746 CDS YP_001266168.1 148546066 5191387 complement(917928..919418) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 919418 5191387 Pput_0821 Pseudomonas putida F1 diguanylate cyclase YP_001266168.1 917928 R 351746 CDS YP_001266169.1 148546067 5191388 complement(919619..920953) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 920953 5191388 Pput_0822 Pseudomonas putida F1 outer membrane porin YP_001266169.1 919619 R 351746 CDS YP_001266170.1 148546068 5194575 complement(921159..921383) 1 NC_009512.1 hypothetical protein 921383 5194575 Pput_0823 Pseudomonas putida F1 hypothetical protein YP_001266170.1 921159 R 351746 CDS YP_001266171.1 148546069 5192576 complement(921584..922318) 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 922318 5192576 Pput_0824 Pseudomonas putida F1 hypothetical protein YP_001266171.1 921584 R 351746 CDS YP_001266172.1 148546070 5192577 complement(922315..922626) 1 NC_009512.1 hypothetical protein 922626 5192577 Pput_0825 Pseudomonas putida F1 hypothetical protein YP_001266172.1 922315 R 351746 CDS YP_001266173.1 148546071 5190884 complement(922715..923614) 1 NC_009512.1 PFAM: response regulator receiver; CheW domain protein; putative CheW protein 923614 5190884 Pput_0826 Pseudomonas putida F1 putative CheW protein YP_001266173.1 922715 R 351746 CDS YP_001266174.1 148546072 5190885 complement(923819..925003) 1 NC_009512.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 925003 5190885 Pput_0827 Pseudomonas putida F1 HlyD family type I secretion membrane fusion protein YP_001266174.1 923819 R 351746 CDS YP_001266175.1 148546073 5192180 complement(925000..927168) 1 NC_009512.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 927168 5192180 Pput_0828 Pseudomonas putida F1 ABC transporter-like protein YP_001266175.1 925000 R 351746 CDS YP_001266176.1 148546074 5192181 complement(927165..928601) 1 NC_009512.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 928601 5192181 Pput_0829 Pseudomonas putida F1 TolC family type I secretion outer membrane protein YP_001266176.1 927165 R 351746 CDS YP_001266177.1 148546075 5195569 complement(928665..952859) 1 NC_009512.1 PFAM: YLP motif domain protein; glycoprotein; glycoprotein 952859 5195569 Pput_0830 Pseudomonas putida F1 glycoprotein YP_001266177.1 928665 R 351746 CDS YP_001266178.1 148546076 5195570 complement(952939..954495) 1 NC_009512.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 954495 5195570 Pput_0831 Pseudomonas putida F1 anaerobic nitric oxide reductase transcriptional regulator YP_001266178.1 952939 R 351746 CDS YP_001266179.1 148546077 5193402 954650..955828 1 NC_009512.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 955828 5193402 Pput_0832 Pseudomonas putida F1 nitric oxide dioxygenase YP_001266179.1 954650 D 351746 CDS YP_001266180.1 148546078 5193403 956285..956791 1 NC_009512.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 956791 5193403 Pput_0833 Pseudomonas putida F1 disulfide bond formation protein B YP_001266180.1 956285 D 351746 CDS YP_001266181.1 148546079 5194926 957351..958292 1 NC_009512.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; ubiquinol oxidase subunit II 958292 5194926 Pput_0835 Pseudomonas putida F1 ubiquinol oxidase subunit II YP_001266181.1 957351 D 351746 CDS YP_001266182.1 148546080 5192358 958296..960314 1 NC_009512.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I 960314 5192358 Pput_0836 Pseudomonas putida F1 cytochrome o ubiquinol oxidase subunit I YP_001266182.1 958296 D 351746 CDS YP_001266183.1 148546081 5195072 960318..960944 1 NC_009512.1 TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III 960944 5195072 Pput_0837 Pseudomonas putida F1 cytochrome o ubiquinol oxidase subunit III YP_001266183.1 960318 D 351746 CDS YP_001266184.1 148546082 5195073 960944..961276 1 NC_009512.1 TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 961276 5195073 Pput_0838 Pseudomonas putida F1 cytochrome o ubiquinol oxidase subunit IV YP_001266184.1 960944 D 351746 CDS YP_001266185.1 148546083 5191199 961288..962175 1 NC_009512.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 962175 5191199 Pput_0839 Pseudomonas putida F1 protoheme IX farnesyltransferase YP_001266185.1 961288 D 351746 CDS YP_001266186.1 148546084 5191200 962485..963693 1 NC_009512.1 PFAM: aminotransferase, class I and II; aminotransferase 963693 5191200 Pput_0840 Pseudomonas putida F1 aminotransferase YP_001266186.1 962485 D 351746 CDS YP_001266187.1 148546085 5195115 963808..964935 1 NC_009512.1 hypothetical protein 964935 5195115 Pput_0841 Pseudomonas putida F1 hypothetical protein YP_001266187.1 963808 D 351746 CDS YP_001266188.1 148546086 5195116 965096..965479 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 965479 5195116 Pput_0842 Pseudomonas putida F1 hypothetical protein YP_001266188.1 965096 D 351746 CDS YP_001266189.1 148546087 5190456 965725..966306 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 966306 5190456 Pput_0843 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001266189.1 965725 D 351746 CDS YP_001266190.1 148546088 5190457 966363..966890 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 966890 5190457 Pput_0844 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001266190.1 966363 D 351746 CDS YP_001266191.1 148546089 5190976 966887..967858 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 967858 5190976 Pput_0845 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001266191.1 966887 D 351746 CDS YP_001266192.1 148546090 5190977 967935..970460 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 970460 5190977 Pput_0846 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001266192.1 967935 D 351746 CDS YP_001266193.1 148546091 5193045 970528..971067 1 NC_009512.1 hypothetical protein 971067 5193045 Pput_0847 Pseudomonas putida F1 hypothetical protein YP_001266193.1 970528 D 351746 CDS YP_001266194.1 148546092 5193046 971088..971474 1 NC_009512.1 PFAM: protein of unknown function DUF1311; hypothetical protein 971474 5193046 Pput_0848 Pseudomonas putida F1 hypothetical protein YP_001266194.1 971088 D 351746 CDS YP_001266195.1 148546093 5190715 complement(971610..972722) 1 NC_009512.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 972722 5190715 Pput_0849 Pseudomonas putida F1 tRNA 2-selenouridine synthase YP_001266195.1 971610 R 351746 CDS YP_001266196.1 148546094 5190862 complement(972722..973756) 1 NC_009512.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 973756 5190862 Pput_0850 Pseudomonas putida F1 selenophosphate synthetase YP_001266196.1 972722 R 351746 CDS YP_001266197.1 148546095 5190863 973883..974737 1 NC_009512.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 974737 5190863 Pput_0851 Pseudomonas putida F1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001266197.1 973883 D 351746 CDS YP_001266198.1 148546096 5194536 975069..976364 1 NC_009512.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 976364 5194536 Pput_0852 Pseudomonas putida F1 phosphonate ABC transporter inner membrane subunit YP_001266198.1 975069 D 351746 CDS YP_001266199.1 148546097 5194537 976361..977128 1 NC_009512.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 977128 5194537 Pput_0853 Pseudomonas putida F1 phosphonate ABC transporter inner membrane subunit YP_001266199.1 976361 D 351746 CDS YP_001266200.1 148546098 5195559 complement(977165..978058) 1 NC_009512.1 PFAM: protein of unknown function UPF0187; hypothetical protein 978058 5195559 Pput_0854 Pseudomonas putida F1 hypothetical protein YP_001266200.1 977165 R 351746 CDS YP_001266201.1 148546099 5195560 978280..978573 1 NC_009512.1 TIGRFAM: Addiction module killer protein, HI1419; PFAM: protein of unknown function DUF891; addiction module killer protein 978573 5195560 Pput_0855 Pseudomonas putida F1 addiction module killer protein YP_001266201.1 978280 D 351746 CDS YP_001266202.1 148546100 5195056 978570..978866 1 NC_009512.1 TIGRFAM: Addiction module antidote protein, HI1420; putative transcriptional regulator 978866 5195056 Pput_0856 Pseudomonas putida F1 putative transcriptional regulator YP_001266202.1 978570 D 351746 CDS YP_001266203.1 148546101 5195057 complement(978877..979356) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 979356 5195057 Pput_0857 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001266203.1 978877 R 351746 CDS YP_001266204.1 148546102 5192052 complement(979527..980150) 1 NC_009512.1 hypothetical protein 980150 5192052 Pput_0858 Pseudomonas putida F1 hypothetical protein YP_001266204.1 979527 R 351746 CDS YP_001266205.1 148546103 5192053 980517..980939 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 980939 5192053 Pput_0859 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001266205.1 980517 D 351746 CDS YP_001266206.1 148546104 5194654 981500..982915 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 982915 5194654 Pput_0860 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266206.1 981500 D 351746 CDS YP_001266207.1 148546105 5194655 982995..983489 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 983489 5194655 Pput_0861 Pseudomonas putida F1 endoribonuclease L-PSP YP_001266207.1 982995 D 351746 CDS YP_001266208.1 148546106 5194927 983752..984801 1 NC_009512.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 984801 queA 5194927 queA Pseudomonas putida F1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001266208.1 983752 D 351746 CDS YP_001266209.1 148546107 5193056 984798..985931 1 NC_009512.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 985931 tgt 5193056 tgt Pseudomonas putida F1 queuine tRNA-ribosyltransferase YP_001266209.1 984798 D 351746 CDS YP_001266210.1 148546108 5192044 985974..986309 1 NC_009512.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 986309 yajC 5192044 yajC Pseudomonas putida F1 preprotein translocase subunit YajC YP_001266210.1 985974 D 351746 CDS YP_001266211.1 148546109 5192045 986373..988235 1 NC_009512.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 988235 secD 5192045 secD Pseudomonas putida F1 preprotein translocase subunit SecD YP_001266211.1 986373 D 351746 CDS YP_001266212.1 148546110 5193232 988246..989154 1 NC_009512.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 989154 secF 5193232 secF Pseudomonas putida F1 preprotein translocase subunit SecF YP_001266212.1 988246 D 351746 CDS YP_001266213.1 148546111 5193233 989288..989818 1 NC_009512.1 PFAM: 17 kDa surface antigen; hypothetical protein 989818 5193233 Pput_0867 Pseudomonas putida F1 hypothetical protein YP_001266213.1 989288 D 351746 CDS YP_001266214.1 148546112 5192294 complement(989988..990806) 1 NC_009512.1 PFAM: inositol monophosphatase; inositol-phosphate phosphatase 990806 5192294 Pput_0868 Pseudomonas putida F1 inositol-phosphate phosphatase YP_001266214.1 989988 R 351746 CDS YP_001266215.1 148546113 5192295 990874..991713 1 NC_009512.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 991713 5192295 Pput_0869 Pseudomonas putida F1 RNA methyltransferase YP_001266215.1 990874 D 351746 CDS YP_001266216.1 148546114 5190917 991717..992502 1 NC_009512.1 TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase 992502 5190917 Pput_0870 Pseudomonas putida F1 serine O-acetyltransferase YP_001266216.1 991717 D 351746 CDS YP_001266217.1 148546115 5190918 992625..993173 1 NC_009512.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 993173 5190918 Pput_0871 Pseudomonas putida F1 BadM/Rrf2 family transcriptional regulator YP_001266217.1 992625 D 351746 CDS YP_001266218.1 148546116 5193580 993219..994433 1 NC_009512.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 994433 5193580 Pput_0872 Pseudomonas putida F1 cysteine desulfurase YP_001266218.1 993219 D 351746 CDS YP_001266219.1 148546117 5193581 994480..994866 1 NC_009512.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; scaffold protein 994866 5193581 Pput_0873 Pseudomonas putida F1 scaffold protein YP_001266219.1 994480 D 351746 CDS YP_001266220.1 148546118 5192874 994895..995218 1 NC_009512.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein IscA 995218 5192874 Pput_0874 Pseudomonas putida F1 iron-sulfur cluster assembly protein IscA YP_001266220.1 994895 D 351746 CDS YP_001266221.1 148546119 5190270 995227..995748 1 NC_009512.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 995748 hscB 5190270 hscB Pseudomonas putida F1 co-chaperone HscB YP_001266221.1 995227 D 351746 CDS YP_001266222.1 148546120 5190271 995792..997654 1 NC_009512.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 997654 hscA 5190271 hscA Pseudomonas putida F1 chaperone protein HscA YP_001266222.1 995792 D 351746 CDS YP_001266223.1 148546121 5194750 997658..997999 1 NC_009512.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; 2Fe-2S ferredoxin 997999 5194750 Pput_0877 Pseudomonas putida F1 2Fe-2S ferredoxin YP_001266223.1 997658 D 351746 CDS YP_001266224.1 148546122 5194751 998010..998210 1 NC_009512.1 PFAM: protein of unknown function DUF528; hypothetical protein 998210 5194751 Pput_0878 Pseudomonas putida F1 hypothetical protein YP_001266224.1 998010 D 351746 CDS YP_001266225.1 148546123 5193448 998299..998724 1 NC_009512.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 998724 ndk 5193448 ndk Pseudomonas putida F1 nucleoside diphosphate kinase YP_001266225.1 998299 D 351746 CDS YP_001266226.1 148546124 5193449 998753..999898 1 NC_009512.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM protein 999898 5193449 Pput_0880 Pseudomonas putida F1 radical SAM protein YP_001266226.1 998753 D 351746 CDS YP_001266227.1 148546125 5191130 999913..1000674 1 NC_009512.1 TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1000674 5191130 Pput_0881 Pseudomonas putida F1 type IV pilus biogenesis/stability protein PilW YP_001266227.1 999913 D 351746 CDS YP_001266228.1 148546126 5191131 1000671..1001693 1 NC_009512.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1001693 5191131 Pput_0882 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266228.1 1000671 D 351746 CDS YP_001266229.1 148546127 5195288 1001697..1002806 1 NC_009512.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1002806 ispG 5195288 ispG Pseudomonas putida F1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001266229.1 1001697 D 351746 CDS YP_001266230.1 148546128 5195289 1002832..1004121 1 NC_009512.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1004121 hisS 5195289 hisS Pseudomonas putida F1 histidyl-tRNA synthetase YP_001266230.1 1002832 D 351746 CDS YP_001266231.1 148546129 5191416 1004161..1004802 1 NC_009512.1 hypothetical protein 1004802 5191416 Pput_0885 Pseudomonas putida F1 hypothetical protein YP_001266231.1 1004161 D 351746 CDS YP_001266232.1 148546130 5191417 1004803..1005945 1 NC_009512.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1005945 5191417 Pput_0886 Pseudomonas putida F1 Pyrrolo-quinoline quinone YP_001266232.1 1004803 D 351746 CDS YP_001266233.1 148546131 5193797 1006062..1007525 1 NC_009512.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1007525 engA 5193797 engA Pseudomonas putida F1 GTP-binding protein EngA YP_001266233.1 1006062 D 351746 CDS YP_001266234.1 148546132 5193798 1007677..1008825 1 NC_009512.1 catalyzes the transfer of an amino moiety; putative aminotransferase 1008825 5193798 Pput_0888 Pseudomonas putida F1 putative aminotransferase YP_001266234.1 1007677 D 351746 CDS YP_001266235.1 148546133 5195517 1008813..1009604 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1009604 5195517 Pput_0889 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001266235.1 1008813 D 351746 CDS YP_001266236.1 148546134 5195518 complement(1009729..1012281) 1 NC_009512.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 1012281 5195518 Pput_0890 Pseudomonas putida F1 flavodoxin/nitric oxide synthase YP_001266236.1 1009729 R 351746 CDS YP_001266237.1 148546135 5192086 complement(1012535..1014826) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1014826 5192086 Pput_0891 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001266237.1 1012535 R 351746 CDS YP_001266238.1 148546136 5192087 1015048..1015728 1 NC_009512.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; putative hydroxylase 1015728 5192087 Pput_0892 Pseudomonas putida F1 putative hydroxylase YP_001266238.1 1015048 D 351746 CDS YP_001266239.1 148546137 5190562 1015732..1016481 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1016481 5190562 Pput_0893 Pseudomonas putida F1 Sel1 domain-containing protein YP_001266239.1 1015732 D 351746 CDS YP_001266240.1 148546138 5190563 complement(1016793..1017956) 1 NC_009512.1 PFAM: Orn/DAP/Arg decarboxylase 2; ornithine decarboxylase 1017956 5190563 Pput_0894 Pseudomonas putida F1 ornithine decarboxylase YP_001266240.1 1016793 R 351746 CDS YP_001266241.1 148546139 5191045 1018451..1018948 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1018948 5191045 Pput_0895 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001266241.1 1018451 D 351746 CDS YP_001266242.1 148546140 5191046 1018969..1019931 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 1019931 5191046 Pput_0896 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001266242.1 1018969 D 351746 CDS YP_001266243.1 148546141 5191112 1020040..1022469 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1022469 5191112 Pput_0897 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001266243.1 1020040 D 351746 CDS YP_001266244.1 148546142 5191113 complement(1022636..1023793) 1 NC_009512.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1023793 5191113 Pput_0898 Pseudomonas putida F1 glycine betaine/L-proline ABC transporter ATPase YP_001266244.1 1022636 R 351746 CDS YP_001266245.1 148546143 5194765 complement(1023790..1024443) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1024443 5194765 Pput_0899 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001266245.1 1023790 R 351746 CDS YP_001266246.1 148546144 5193424 complement(1024440..1025351) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 1025351 5193424 Pput_0900 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001266246.1 1024440 R 351746 CDS YP_001266247.1 148546145 5193425 complement(1025365..1026078) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1026078 5193425 Pput_0901 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001266247.1 1025365 R 351746 CDS YP_001266248.1 148546146 5191436 1026594..1028219 1 NC_009512.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1028219 prfC 5191436 prfC Pseudomonas putida F1 peptide chain release factor 3 YP_001266248.1 1026594 D 351746 CDS YP_001266249.1 148546147 5191437 complement(1028350..1029429) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1029429 5191437 Pput_0903 Pseudomonas putida F1 extracellular solute-binding protein YP_001266249.1 1028350 R 351746 CDS YP_001266250.1 148546148 5190230 complement(1029482..1029823) 1 NC_009512.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 1029823 5190230 Pput_0904 Pseudomonas putida F1 hypothetical protein YP_001266250.1 1029482 R 351746 CDS YP_001266251.1 148546149 5190231 complement(1029857..1031263) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1031263 5190231 Pput_0905 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266251.1 1029857 R 351746 CDS YP_001266252.1 148546150 5191466 complement(1031328..1032152) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1032152 5191466 Pput_0906 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266252.1 1031328 R 351746 CDS YP_001266253.1 148546151 5194487 1033430..1034179 1 NC_009512.1 hypothetical protein 1034179 5194487 Pput_0908 Pseudomonas putida F1 hypothetical protein YP_001266253.1 1033430 D 351746 CDS YP_001266254.1 148546152 5193546 1034198..1034656 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1034656 5193546 Pput_0909 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001266254.1 1034198 D 351746 CDS YP_001266255.1 148546153 5193547 1034653..1035099 1 NC_009512.1 hypothetical protein 1035099 5193547 Pput_0910 Pseudomonas putida F1 hypothetical protein YP_001266255.1 1034653 D 351746 CDS YP_001266256.1 148546154 5192155 1035110..1035985 1 NC_009512.1 hypothetical protein 1035985 5192155 Pput_0911 Pseudomonas putida F1 hypothetical protein YP_001266256.1 1035110 D 351746 CDS YP_001266257.1 148546155 5192156 1035982..1037214 1 NC_009512.1 biotin carboxylase-like protein 1037214 5192156 Pput_0912 Pseudomonas putida F1 biotin carboxylase-like protein YP_001266257.1 1035982 D 351746 CDS YP_001266258.1 148546156 5194399 1037255..1038496 1 NC_009512.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 1038496 5194399 Pput_0913 Pseudomonas putida F1 sodium/hydrogen exchanger YP_001266258.1 1037255 D 351746 CDS YP_001266259.1 148546157 5194400 1038572..1039441 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1039441 5194400 Pput_0914 Pseudomonas putida F1 hypothetical protein YP_001266259.1 1038572 D 351746 CDS YP_001266260.1 148546158 5194880 1039536..1040516 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1040516 5194880 Pput_0915 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266260.1 1039536 D 351746 CDS YP_001266261.1 148546159 5194881 1040519..1040698 1 NC_009512.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1040698 5194881 Pput_0916 Pseudomonas putida F1 rubredoxin-type Fe(Cys)4 protein YP_001266261.1 1040519 D 351746 CDS YP_001266262.1 148546160 5191801 complement(1041138..1042106) 1 NC_009512.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 1042106 dppF 5191801 dppF Pseudomonas putida F1 dipeptide transporter ATP-binding subunit YP_001266262.1 1041138 R 351746 CDS YP_001266263.1 148546161 5191802 complement(1042106..1043074) 1 NC_009512.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1043074 5191802 Pput_0918 Pseudomonas putida F1 oligopeptide/dipeptide ABC transporter ATPase YP_001266263.1 1042106 R 351746 CDS YP_001266264.1 148546162 5191568 complement(1043085..1044011) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1044011 5191568 Pput_0919 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001266264.1 1043085 R 351746 CDS YP_001266265.1 148546163 5191569 complement(1044022..1045032) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; alkaline phosphatase 1045032 5191569 Pput_0920 Pseudomonas putida F1 alkaline phosphatase YP_001266265.1 1044022 R 351746 CDS YP_001266266.1 148546164 5195370 complement(1045124..1046734) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1046734 5195370 Pput_0921 Pseudomonas putida F1 extracellular solute-binding protein YP_001266266.1 1045124 R 351746 CDS YP_001266267.1 148546165 5195371 complement(1046813..1048192) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 1048192 5195371 Pput_0922 Pseudomonas putida F1 outer membrane porin YP_001266267.1 1046813 R 351746 CDS YP_001266268.1 148546166 5195340 complement(1048421..1050013) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1050013 5195340 Pput_0923 Pseudomonas putida F1 extracellular solute-binding protein YP_001266268.1 1048421 R 351746 CDS YP_001266269.1 148546167 5195341 complement(1050161..1051786) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1051786 5195341 Pput_0924 Pseudomonas putida F1 extracellular solute-binding protein YP_001266269.1 1050161 R 351746 CDS YP_001266270.1 148546168 5190206 complement(1052167..1052883) 1 NC_009512.1 PFAM: protein of unknown function DUF541; hypothetical protein 1052883 5190206 Pput_0925 Pseudomonas putida F1 hypothetical protein YP_001266270.1 1052167 R 351746 CDS YP_001266271.1 148546169 5194494 1053086..1054342 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1054342 5194494 Pput_0926 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266271.1 1053086 D 351746 CDS YP_001266272.1 148546170 5194495 1054339..1054902 1 NC_009512.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; two component Fis family transcriptional regulator 1054902 5194495 Pput_0927 Pseudomonas putida F1 two component Fis family transcriptional regulator YP_001266272.1 1054339 D 351746 CDS YP_001266273.1 148546171 5191000 1055011..1056090 1 NC_009512.1 PFAM: beta-lactamase; beta-lactamase 1056090 5191000 Pput_0928 Pseudomonas putida F1 beta-lactamase YP_001266273.1 1055011 D 351746 CDS YP_001266274.1 148546172 5191001 1056087..1056383 1 NC_009512.1 hypothetical protein 1056383 5191001 Pput_0929 Pseudomonas putida F1 hypothetical protein YP_001266274.1 1056087 D 351746 CDS YP_001266275.1 148546173 5192631 1056428..1057009 1 NC_009512.1 PFAM: YceI family protein; hypothetical protein 1057009 5192631 Pput_0930 Pseudomonas putida F1 hypothetical protein YP_001266275.1 1056428 D 351746 CDS YP_001266276.1 148546174 5192632 1057011..1058168 1 NC_009512.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 1058168 5192632 Pput_0931 Pseudomonas putida F1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein YP_001266276.1 1057011 D 351746 CDS YP_001266277.1 148546175 5193216 1058220..1058798 1 NC_009512.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 1058798 5193216 Pput_0932 Pseudomonas putida F1 PfpI family intracellular peptidase YP_001266277.1 1058220 D 351746 CDS YP_001266278.1 148546176 5193217 complement(1058829..1059227) 1 NC_009512.1 PFAM: protein of unknown function DUF1486; hypothetical protein 1059227 5193217 Pput_0933 Pseudomonas putida F1 hypothetical protein YP_001266278.1 1058829 R 351746 CDS YP_001266279.1 148546177 5192556 1059343..1059933 1 NC_009512.1 hypothetical protein 1059933 5192556 Pput_0934 Pseudomonas putida F1 hypothetical protein YP_001266279.1 1059343 D 351746 CDS YP_001266280.1 148546178 5192557 1059930..1060802 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1060802 5192557 Pput_0935 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001266280.1 1059930 D 351746 CDS YP_001266281.1 148546179 5194552 complement(1060922..1062445) 1 NC_009512.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 1062445 5194552 Pput_0936 Pseudomonas putida F1 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001266281.1 1060922 R 351746 CDS YP_001266282.1 148546180 5194553 complement(1062794..1063864) 1 NC_009512.1 hypothetical protein 1063864 5194553 Pput_0937 Pseudomonas putida F1 hypothetical protein YP_001266282.1 1062794 R 351746 CDS YP_001266283.1 148546181 5194334 1064220..1065140 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; hypothetical protein 1065140 5194334 Pput_0938 Pseudomonas putida F1 hypothetical protein YP_001266283.1 1064220 D 351746 CDS YP_001266284.1 148546182 5194335 complement(1065183..1065911) 1 NC_009512.1 PAP2 (acid phosphatase) superfamily protein-like protein 1065911 5194335 Pput_0939 Pseudomonas putida F1 PAP2 (acid phosphatase) superfamily protein-like protein YP_001266284.1 1065183 R 351746 CDS YP_001266285.1 148546183 5190740 1066095..1066778 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1066778 5190740 Pput_0940 Pseudomonas putida F1 two component transcriptional regulator YP_001266285.1 1066095 D 351746 CDS YP_001266286.1 148546184 5190741 1066768..1068078 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1068078 5190741 Pput_0941 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266286.1 1066768 D 351746 CDS YP_001266287.1 148546185 5194263 1068186..1068866 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1068866 5194263 Pput_0942 Pseudomonas putida F1 type 11 methyltransferase YP_001266287.1 1068186 D 351746 CDS YP_001266288.1 148546186 5194264 1068873..1069571 1 NC_009512.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 1069571 5194264 Pput_0943 Pseudomonas putida F1 lipopolysaccharide kinase YP_001266288.1 1068873 D 351746 CDS YP_001266289.1 148546187 5194905 1069571..1069804 1 NC_009512.1 hypothetical protein 1069804 5194905 Pput_0944 Pseudomonas putida F1 hypothetical protein YP_001266289.1 1069571 D 351746 CDS YP_001266290.1 148546188 5194906 complement(1069913..1072957) 1 NC_009512.1 MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 1072957 5194906 Pput_0945 Pseudomonas putida F1 multidrug efflux protein YP_001266290.1 1069913 R 351746 CDS YP_001266291.1 148546189 5190186 complement(1072970..1074118) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1074118 5190186 Pput_0946 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001266291.1 1072970 R 351746 CDS YP_001266292.1 148546190 5190187 complement(1074337..1075434) 1 NC_009512.1 PFAM: uncharacterised conserved protein UCP028101; hypothetical protein 1075434 5190187 Pput_0947 Pseudomonas putida F1 hypothetical protein YP_001266292.1 1074337 R 351746 CDS YP_001266293.1 148546191 5193114 complement(1075437..1076501) 1 NC_009512.1 periplasmic lipoprotein-like protein 1076501 5193114 Pput_0948 Pseudomonas putida F1 periplasmic lipoprotein-like protein YP_001266293.1 1075437 R 351746 CDS YP_001266294.1 148546192 5193115 complement(1076521..1077948) 1 NC_009512.1 PFAM: protein of unknown function DUF1111; hypothetical protein 1077948 5193115 Pput_0949 Pseudomonas putida F1 hypothetical protein YP_001266294.1 1076521 R 351746 CDS YP_001266295.1 148546193 5191346 complement(1078058..1078444) 1 NC_009512.1 hypothetical protein 1078444 5191346 Pput_0950 Pseudomonas putida F1 hypothetical protein YP_001266295.1 1078058 R 351746 CDS YP_001266296.1 148546194 5192035 complement(1078459..1078941) 1 NC_009512.1 hypothetical protein 1078941 5192035 Pput_0951 Pseudomonas putida F1 hypothetical protein YP_001266296.1 1078459 R 351746 CDS YP_001266297.1 148546195 5192036 complement(1079083..1080417) 1 NC_009512.1 hypothetical protein 1080417 5192036 Pput_0952 Pseudomonas putida F1 hypothetical protein YP_001266297.1 1079083 R 351746 CDS YP_001266298.1 148546196 5191729 complement(1080577..1082661) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 1082661 5191729 Pput_0953 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001266298.1 1080577 R 351746 CDS YP_001266299.1 148546197 5191730 complement(1082878..1083474) 1 NC_009512.1 PFAM: manganese and iron superoxide dismutase; superoxide dismutase 1083474 5191730 Pput_0954 Pseudomonas putida F1 superoxide dismutase YP_001266299.1 1082878 R 351746 CDS YP_001266300.1 148546198 5190326 complement(1083746..1084345) 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 1084345 5190326 Pput_0955 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001266300.1 1083746 R 351746 CDS YP_001266301.1 148546199 5190327 1084447..1085337 1 NC_009512.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1085337 5190327 Pput_0956 Pseudomonas putida F1 chromosome replication initiation inhibitor protein YP_001266301.1 1084447 D 351746 CDS YP_001266302.1 148546200 5190927 1085387..1086379 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1086379 5190927 Pput_0957 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001266302.1 1085387 D 351746 CDS YP_001266303.1 148546201 5190928 1086453..1087322 1 NC_009512.1 hypothetical protein 1087322 5190928 Pput_0958 Pseudomonas putida F1 hypothetical protein YP_001266303.1 1086453 D 351746 CDS YP_001266304.1 148546202 5190758 complement(1087418..1088467) 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1088467 5190758 Pput_0959 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001266304.1 1087418 R 351746 CDS YP_001266305.1 148546203 5190759 complement(1088485..1088787) 1 NC_009512.1 PFAM: regulatory protein, ArsR; regulatory protein ArsR 1088787 5190759 Pput_0960 Pseudomonas putida F1 regulatory protein ArsR YP_001266305.1 1088485 R 351746 CDS YP_001266306.1 148546204 5190768 1088938..1089522 1 NC_009512.1 PFAM: protein of unknown function DUF479; hypothetical protein 1089522 5190768 Pput_0961 Pseudomonas putida F1 hypothetical protein YP_001266306.1 1088938 D 351746 CDS YP_001266307.1 148546205 5190769 complement(1089635..1090423) 1 NC_009512.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1090423 5190769 Pput_0962 Pseudomonas putida F1 phospholipid/glycerol acyltransferase YP_001266307.1 1089635 R 351746 CDS YP_001266308.1 148546206 5192526 complement(1090423..1091178) 1 NC_009512.1 hypothetical protein 1091178 5192526 Pput_0963 Pseudomonas putida F1 hypothetical protein YP_001266308.1 1090423 R 351746 CDS YP_001266309.1 148546207 5192527 1091339..1092226 1 NC_009512.1 hypothetical protein 1092226 5192527 Pput_0964 Pseudomonas putida F1 hypothetical protein YP_001266309.1 1091339 D 351746 CDS YP_001266310.1 148546208 5193976 1092207..1092350 1 NC_009512.1 hypothetical protein 1092350 5193976 Pput_0965 Pseudomonas putida F1 hypothetical protein YP_001266310.1 1092207 D 351746 CDS YP_001266311.1 148546209 5193977 1092420..1093361 1 NC_009512.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 1093361 5193977 Pput_0966 Pseudomonas putida F1 auxin efflux carrier YP_001266311.1 1092420 D 351746 CDS YP_001266312.1 148546210 5190376 1093418..1094779 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1094779 5190376 Pput_0967 Pseudomonas putida F1 amino acid permease-associated protein YP_001266312.1 1093418 D 351746 CDS YP_001266313.1 148546211 5190377 complement(1094923..1095966) 1 NC_009512.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; CaCA family Na(+)/Ca(+) antiporter 1095966 5190377 Pput_0968 Pseudomonas putida F1 CaCA family Na(+)/Ca(+) antiporter YP_001266313.1 1094923 R 351746 CDS YP_001266314.1 148546212 5190929 complement(1096027..1096401) 1 NC_009512.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein A 1096401 5190929 Pput_0969 Pseudomonas putida F1 rare lipoprotein A YP_001266314.1 1096027 R 351746 CDS YP_001266315.1 148546213 5190930 complement(1096530..1097975) 1 NC_009512.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1097975 gatB 5190930 gatB Pseudomonas putida F1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001266315.1 1096530 R 351746 CDS YP_001266316.1 148546214 5192698 complement(1097987..1099438) 1 NC_009512.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1099438 gatA 5192698 gatA Pseudomonas putida F1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001266316.1 1097987 R 351746 CDS YP_001266317.1 148546215 5192699 complement(1099454..1099741) 1 NC_009512.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1099741 gatC 5192699 gatC Pseudomonas putida F1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001266317.1 1099454 R 351746 CDS YP_001266318.1 148546216 5190515 1099946..1100983 1 NC_009512.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1100983 5190515 Pput_0973 Pseudomonas putida F1 rod shape-determining protein MreB YP_001266318.1 1099946 D 351746 CDS YP_001266319.1 148546217 5190516 1101209..1102201 1 NC_009512.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1102201 5190516 Pput_0974 Pseudomonas putida F1 rod shape-determining protein MreC YP_001266319.1 1101209 D 351746 CDS YP_001266320.1 148546218 5193694 1102201..1102689 1 NC_009512.1 PFAM: Rod shape-determining protein MreD; rod shape-determining protein MreD 1102689 5193694 Pput_0975 Pseudomonas putida F1 rod shape-determining protein MreD YP_001266320.1 1102201 D 351746 CDS YP_001266321.1 148546219 5193927 1102722..1103333 1 NC_009512.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1103333 5193927 Pput_0976 Pseudomonas putida F1 Maf-like protein YP_001266321.1 1102722 D 351746 CDS YP_001266322.1 148546220 5193928 1103388..1104845 1 NC_009512.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease 1104845 5193928 Pput_0977 Pseudomonas putida F1 ribonuclease YP_001266322.1 1103388 D 351746 CDS YP_001266323.1 148546221 5192345 1104934..1108749 1 NC_009512.1 hypothetical protein 1108749 5192345 Pput_0978 Pseudomonas putida F1 hypothetical protein YP_001266323.1 1104934 D 351746 CDS YP_001266324.1 148546222 5192346 1108758..1109609 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1109609 5192346 Pput_0979 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001266324.1 1108758 D 351746 CDS YP_001266325.1 148546223 5190706 1109612..1111051 1 NC_009512.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1111051 5190706 Pput_0980 Pseudomonas putida F1 C69 family peptidase YP_001266325.1 1109612 D 351746 CDS YP_001266326.1 148546224 5190707 complement(1111109..1111630) 1 NC_009512.1 PFAM: protein of unknown function DUF615; hypothetical protein 1111630 5190707 Pput_0981 Pseudomonas putida F1 hypothetical protein YP_001266326.1 1111109 R 351746 CDS YP_001266327.1 148546225 5193616 1111740..1113086 1 NC_009512.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1113086 5193616 Pput_0982 Pseudomonas putida F1 C69 family peptidase YP_001266327.1 1111740 D 351746 CDS YP_001266328.1 148546226 5193617 1113332..1113733 1 NC_009512.1 hypothetical protein 1113733 5193617 Pput_0983 Pseudomonas putida F1 hypothetical protein YP_001266328.1 1113332 D 351746 CDS YP_001266329.1 148546227 5190393 1113723..1115102 1 NC_009512.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1115102 fumC 5190393 fumC Pseudomonas putida F1 fumarate hydratase YP_001266329.1 1113723 D 351746 CDS YP_001266330.1 148546228 5190394 1115479..1116204 1 NC_009512.1 PFAM: manganese and iron superoxide dismutase; superoxide dismutase 1116204 5190394 Pput_0985 Pseudomonas putida F1 superoxide dismutase YP_001266330.1 1115479 D 351746 CDS YP_001266331.1 148546229 5192257 1116216..1117109 1 NC_009512.1 PFAM: zinc/iron permease; zinc/iron permease 1117109 5192257 Pput_0986 Pseudomonas putida F1 zinc/iron permease YP_001266331.1 1116216 D 351746 CDS YP_001266332.1 148546230 5192258 complement(1117137..1117409) 1 NC_009512.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 1117409 5192258 Pput_0987 Pseudomonas putida F1 phosphotransferase system, phosphocarrier protein HPr YP_001266332.1 1117137 R 351746 CDS YP_001266333.1 148546231 5193362 complement(1117428..1118282) 1 NC_009512.1 PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 1118282 5193362 Pput_0988 Pseudomonas putida F1 hypothetical protein YP_001266333.1 1117428 R 351746 CDS YP_001266334.1 148546232 5193363 complement(1118285..1118749) 1 NC_009512.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 1118749 5193363 Pput_0989 Pseudomonas putida F1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001266334.1 1118285 R 351746 CDS YP_001266335.1 148546233 5192050 complement(1118762..1119070) 1 NC_009512.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 1119070 5192050 Pput_0990 Pseudomonas putida F1 sigma 54 modulation protein/ribosomal protein S30EA YP_001266335.1 1118762 R 351746 CDS YP_001266336.1 148546234 5192051 complement(1119150..1120643) 1 NC_009512.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1120643 5192051 Pput_0991 Pseudomonas putida F1 RNA polymerase factor sigma-54 YP_001266336.1 1119150 R 351746 CDS YP_001266337.1 148546235 5192308 complement(1120819..1121544) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1121544 5192308 Pput_0992 Pseudomonas putida F1 ABC transporter-like protein YP_001266337.1 1120819 R 351746 CDS YP_001266338.1 148546236 5192309 complement(1121545..1122069) 1 NC_009512.1 TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; cell envelope biogenesis YhbN 1122069 5192309 Pput_0993 Pseudomonas putida F1 cell envelope biogenesis YhbN YP_001266338.1 1121545 R 351746 CDS YP_001266339.1 148546237 5190353 complement(1122056..1122628) 1 NC_009512.1 PFAM: protein of unknown function DUF1239; hypothetical protein 1122628 5190353 Pput_0994 Pseudomonas putida F1 hypothetical protein YP_001266339.1 1122056 R 351746 CDS YP_001266340.1 148546238 5190354 complement(1122637..1123161) 1 NC_009512.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1123161 5190354 Pput_0995 Pseudomonas putida F1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001266340.1 1122637 R 351746 CDS YP_001266341.1 148546239 5190774 complement(1123174..1124148) 1 NC_009512.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1124148 5190774 Pput_0996 Pseudomonas putida F1 KpsF/GutQ family protein YP_001266341.1 1123174 R 351746 CDS YP_001266342.1 148546240 5190775 1124397..1125206 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1125206 5190775 Pput_0997 Pseudomonas putida F1 ABC transporter-like protein YP_001266342.1 1124397 D 351746 CDS YP_001266343.1 148546241 5192476 1125206..1126003 1 NC_009512.1 PFAM: protein of unknown function DUF140; hypothetical protein 1126003 5192476 Pput_0998 Pseudomonas putida F1 hypothetical protein YP_001266343.1 1125206 D 351746 CDS YP_001266344.1 148546242 5192477 1126003..1126485 1 NC_009512.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 1126485 5192477 Pput_0999 Pseudomonas putida F1 hypothetical protein YP_001266344.1 1126003 D 351746 CDS YP_001266345.1 148546243 5193251 1126495..1127142 1 NC_009512.1 PFAM: toluene tolerance family protein; toluene tolerance family protein 1127142 5193251 Pput_1000 Pseudomonas putida F1 toluene tolerance family protein YP_001266345.1 1126495 D 351746 CDS YP_001266346.1 148546244 5194809 1127160..1127441 1 NC_009512.1 hypothetical protein 1127441 5194809 Pput_1001 Pseudomonas putida F1 hypothetical protein YP_001266346.1 1127160 D 351746 CDS YP_001266347.1 148546245 5194810 1127559..1127798 1 NC_009512.1 PFAM: BolA family protein; BolA family protein 1127798 5194810 Pput_1002 Pseudomonas putida F1 BolA family protein YP_001266347.1 1127559 D 351746 CDS YP_001266348.1 148546246 5193938 1127822..1129087 1 NC_009512.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1129087 5193938 Pput_1003 Pseudomonas putida F1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001266348.1 1127822 D 351746 CDS YP_001266349.1 148546247 5193939 1129179..1129814 1 NC_009512.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1129814 hisG 5193939 hisG Pseudomonas putida F1 ATP phosphoribosyltransferase catalytic subunit YP_001266349.1 1129179 D 351746 CDS YP_001266350.1 148546248 5193498 1130101..1131426 1 NC_009512.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1131426 hisD 5193498 hisD Pseudomonas putida F1 histidinol dehydrogenase YP_001266350.1 1130101 D 351746 CDS YP_001266351.1 148546249 5193499 1131429..1132475 1 NC_009512.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1132475 5193499 Pput_1006 Pseudomonas putida F1 histidinol-phosphate aminotransferase YP_001266351.1 1131429 D 351746 CDS YP_001266352.1 148546250 5191104 complement(1133009..1134193) 1 NC_009512.1 hypothetical protein 1134193 5191104 Pput_1007 Pseudomonas putida F1 hypothetical protein YP_001266352.1 1133009 R 351746 CDS YP_001266353.1 148546251 5191105 1134333..1134983 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1134983 5191105 Pput_1008 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266353.1 1134333 D 351746 CDS YP_001266354.1 148546252 5191998 1134997..1136277 1 NC_009512.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; cyanate transporter 1136277 5191998 Pput_1009 Pseudomonas putida F1 cyanate transporter YP_001266354.1 1134997 D 351746 CDS YP_001266355.1 148546253 5191999 1136387..1136863 1 NC_009512.1 hypothetical protein 1136863 5191999 Pput_1010 Pseudomonas putida F1 hypothetical protein YP_001266355.1 1136387 D 351746 CDS YP_001266356.1 148546254 5190260 1136856..1137197 1 NC_009512.1 PFAM: Excinuclease ABC, C subunit domain protein; GIY-YIG nuclease superfamily protein 1137197 5190260 Pput_1011 Pseudomonas putida F1 GIY-YIG nuclease superfamily protein YP_001266356.1 1136856 D 351746 CDS YP_001266357.1 148546255 5190261 complement(1137145..1138152) 1 NC_009512.1 PFAM: 37kDa nucleoid-associated protein; nucleoid-associated protein NdpA 1138152 5190261 Pput_1012 Pseudomonas putida F1 nucleoid-associated protein NdpA YP_001266357.1 1137145 R 351746 CDS YP_001266358.1 148546256 5195493 1138522..1138803 1 NC_009512.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1138803 5195493 Pput_1013 Pseudomonas putida F1 histone family protein DNA-binding protein YP_001266358.1 1138522 D 351746 CDS YP_001266359.1 148546257 5195494 complement(1138851..1139804) 1 NC_009512.1 PFAM: protein of unknown function DUF890; putative SAM-dependent methyltransferase 1139804 5195494 Pput_1014 Pseudomonas putida F1 putative SAM-dependent methyltransferase YP_001266359.1 1138851 R 351746 CDS YP_001266360.1 148546258 5194903 complement(1139983..1142829) 1 NC_009512.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1142829 valS 5194903 valS Pseudomonas putida F1 valyl-tRNA synthetase YP_001266360.1 1139983 R 351746 CDS YP_001266361.1 148546259 5194904 complement(1143028..1143393) 1 NC_009512.1 hypothetical protein 1143393 5194904 Pput_1016 Pseudomonas putida F1 hypothetical protein YP_001266361.1 1143028 R 351746 CDS YP_001266362.1 148546260 5194166 complement(1143399..1143827) 1 NC_009512.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1143827 5194166 Pput_1017 Pseudomonas putida F1 DNA polymerase III subunit chi YP_001266362.1 1143399 R 351746 CDS YP_001266363.1 148546261 5194167 complement(1143878..1145371) 1 NC_009512.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1145371 5194167 Pput_1018 Pseudomonas putida F1 leucyl aminopeptidase YP_001266363.1 1143878 R 351746 CDS YP_001266364.1 148546262 5194856 1145637..1146788 1 NC_009512.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1146788 5194856 Pput_1019 Pseudomonas putida F1 YjgP/YjgQ family permease YP_001266364.1 1145637 D 351746 CDS YP_001266365.1 148546263 5194857 1146781..1147842 1 NC_009512.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1147842 5194857 Pput_1020 Pseudomonas putida F1 YjgP/YjgQ family permease YP_001266365.1 1146781 D 351746 CDS YP_001266366.1 148546264 5192054 complement(1147991..1148479) 1 NC_009512.1 PFAM: RDD domain containing protein; RDD domain-containing protein 1148479 5192054 Pput_1021 Pseudomonas putida F1 RDD domain-containing protein YP_001266366.1 1147991 R 351746 CDS YP_001266367.1 148546265 5192055 complement(1148570..1148779) 1 NC_009512.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1148779 5192055 Pput_1022 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001266367.1 1148570 R 351746 CDS YP_001266368.1 148546266 5194672 complement(1149137..1150258) 1 NC_009512.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 1150258 5194672 Pput_1023 Pseudomonas putida F1 glycine cleavage system T protein YP_001266368.1 1149137 R 351746 CDS YP_001266369.1 148546267 5194673 complement(1150286..1151662) 1 NC_009512.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1151662 5194673 Pput_1024 Pseudomonas putida F1 L-serine dehydratase 1 YP_001266369.1 1150286 R 351746 CDS YP_001266370.1 148546268 5193158 complement(1151769..1154624) 1 NC_009512.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1154624 5193158 Pput_1025 Pseudomonas putida F1 glycine dehydrogenase YP_001266370.1 1151769 R 351746 CDS YP_001266371.1 148546269 5195046 complement(1154636..1155019) 1 NC_009512.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1155019 5195046 Pput_1026 Pseudomonas putida F1 glycine cleavage system protein H YP_001266371.1 1154636 R 351746 CDS YP_001266372.1 148546270 5195047 complement(1155325..1155792) 1 NC_009512.1 PFAM: DoxX family protein; DoxX family protein 1155792 5195047 Pput_1027 Pseudomonas putida F1 DoxX family protein YP_001266372.1 1155325 R 351746 CDS YP_001266373.1 148546271 5192770 complement(1155785..1156558) 1 NC_009512.1 hypothetical protein 1156558 5192770 Pput_1028 Pseudomonas putida F1 hypothetical protein YP_001266373.1 1155785 R 351746 CDS YP_001266374.1 148546272 5192771 complement(1156555..1157388) 1 NC_009512.1 PFAM: protein of unknown function DUF692; hypothetical protein 1157388 5192771 Pput_1029 Pseudomonas putida F1 hypothetical protein YP_001266374.1 1156555 R 351746 CDS YP_001266375.1 148546273 5193394 complement(1157405..1157692) 1 NC_009512.1 hypothetical protein 1157692 5193394 Pput_1030 Pseudomonas putida F1 hypothetical protein YP_001266375.1 1157405 R 351746 CDS YP_001266376.1 148546274 5193395 1157917..1158501 1 NC_009512.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1158501 5193395 Pput_1031 Pseudomonas putida F1 RNA polymerase sigma factor YP_001266376.1 1157917 D 351746 CDS YP_001266377.1 148546275 5192139 1158491..1159132 1 NC_009512.1 PFAM: protein of unknown function DUF1109; hypothetical protein 1159132 5192139 Pput_1032 Pseudomonas putida F1 hypothetical protein YP_001266377.1 1158491 D 351746 CDS YP_001266378.1 148546276 5192140 complement(1159194..1160399) 1 NC_009512.1 PFAM: sodium/glutamate symporter; sodium/glutamate symporter 1160399 5192140 Pput_1033 Pseudomonas putida F1 sodium/glutamate symporter YP_001266378.1 1159194 R 351746 CDS YP_001266379.1 148546277 5191012 complement(1160527..1162035) 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; transcriptional regulator TyrR 1162035 5191012 Pput_1034 Pseudomonas putida F1 transcriptional regulator TyrR YP_001266379.1 1160527 R 351746 CDS YP_001266380.1 148546278 5191013 complement(1162188..1162556) 1 NC_009512.1 hypothetical protein 1162556 5191013 Pput_1035 Pseudomonas putida F1 hypothetical protein YP_001266380.1 1162188 R 351746 CDS YP_001266381.1 148546279 5194021 complement(1162613..1163542) 1 NC_009512.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1163542 5194021 Pput_1036 Pseudomonas putida F1 carbamate kinase YP_001266381.1 1162613 R 351746 CDS YP_001266382.1 148546280 5194022 complement(1163728..1164738) 1 NC_009512.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1164738 5194022 Pput_1037 Pseudomonas putida F1 ornithine carbamoyltransferase YP_001266382.1 1163728 R 351746 CDS YP_001266383.1 148546281 5193084 complement(1164808..1166061) 1 NC_009512.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1166061 5193084 Pput_1038 Pseudomonas putida F1 arginine deiminase YP_001266383.1 1164808 R 351746 CDS YP_001266384.1 148546282 5193085 complement(1166095..1167522) 1 NC_009512.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 1167522 5193085 Pput_1039 Pseudomonas putida F1 arginine/ornithine antiporter YP_001266384.1 1166095 R 351746 CDS YP_001266385.1 148546283 5193530 1167944..1169386 1 NC_009512.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 1169386 5193530 Pput_1040 Pseudomonas putida F1 arginine/ornithine antiporter YP_001266385.1 1167944 D 351746 CDS YP_001266386.1 148546284 5193531 complement(1169366..1169779) 1 NC_009512.1 PFAM: protein of unknown function DUF454; hypothetical protein 1169779 5193531 Pput_1041 Pseudomonas putida F1 hypothetical protein YP_001266386.1 1169366 R 351746 CDS YP_001266387.1 148546285 5191616 complement(1169834..1170427) 1 NC_009512.1 PFAM: Haem oxygenase; heme oxygenase 1170427 5191616 Pput_1042 Pseudomonas putida F1 heme oxygenase YP_001266387.1 1169834 R 351746 CDS YP_001266388.1 148546286 5191617 complement(1170649..1173237) 1 NC_009512.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 1173237 5191617 Pput_1043 Pseudomonas putida F1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_001266388.1 1170649 R 351746 CDS YP_001266389.1 148546287 5194726 complement(1173363..1174325) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 1174325 5194726 Pput_1044 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001266389.1 1173363 R 351746 CDS YP_001266390.1 148546288 5194727 complement(1174414..1174926) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1174926 5194727 Pput_1045 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001266390.1 1174414 R 351746 CDS YP_001266391.1 148546289 5194538 complement(1175301..1176251) 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 1176251 5194538 Pput_1046 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001266391.1 1175301 R 351746 CDS YP_001266392.1 148546290 5194539 complement(1176630..1177631) 1 NC_009512.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; type I glyceraldehyde-3-phosphate dehydrogenase 1177631 5194539 Pput_1047 Pseudomonas putida F1 type I glyceraldehyde-3-phosphate dehydrogenase YP_001266392.1 1176630 R 351746 CDS YP_001266393.1 148546291 5194305 1177896..1179722 1 NC_009512.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1179722 5194305 Pput_1048 Pseudomonas putida F1 phosphogluconate dehydratase YP_001266393.1 1177896 D 351746 CDS YP_001266394.1 148546292 5194306 1179719..1180678 1 NC_009512.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1180678 glk 5194306 glk Pseudomonas putida F1 glucokinase YP_001266394.1 1179719 D 351746 CDS YP_001266395.1 148546293 5192650 1180700..1181482 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1181482 5192650 Pput_1050 Pseudomonas putida F1 two component transcriptional regulator YP_001266395.1 1180700 D 351746 CDS YP_001266396.1 148546294 5191987 1181463..1182917 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1182917 5191987 Pput_1051 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266396.1 1181463 D 351746 CDS YP_001266397.1 148546295 5191988 1183133..1184386 1 NC_009512.1 PFAM: N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 1184386 5191988 Pput_1052 Pseudomonas putida F1 N-acylglucosamine 2-epimerase YP_001266397.1 1183133 D 351746 CDS YP_001266398.1 148546296 5193988 1184494..1185780 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1185780 5193988 Pput_1053 Pseudomonas putida F1 extracellular solute-binding protein YP_001266398.1 1184494 D 351746 CDS YP_001266399.1 148546297 5193989 1185914..1186822 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1186822 5193989 Pput_1054 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001266399.1 1185914 D 351746 CDS YP_001266400.1 148546298 5194660 1186815..1187660 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1187660 5194660 Pput_1055 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001266400.1 1186815 D 351746 CDS YP_001266401.1 148546299 5194661 1187664..1188818 1 NC_009512.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1188818 5194661 Pput_1056 Pseudomonas putida F1 ABC transporter-like protein YP_001266401.1 1187664 D 351746 CDS YP_001266402.1 148546300 5190176 1188859..1190202 1 NC_009512.1 PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1190202 5190176 Pput_1057 Pseudomonas putida F1 carbohydrate-selective porin OprB YP_001266402.1 1188859 D 351746 CDS YP_001266403.1 148546301 5190177 1190320..1191174 1 NC_009512.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 1191174 5190177 Pput_1058 Pseudomonas putida F1 aldose 1-epimerase YP_001266403.1 1190320 D 351746 CDS YP_001266404.1 148546302 5193748 complement(1191167..1192039) 1 NC_009512.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1192039 5193748 Pput_1059 Pseudomonas putida F1 DNA-binding transcriptional regulator HexR YP_001266404.1 1191167 R 351746 CDS YP_001266405.1 148546303 5193749 1192242..1193711 1 NC_009512.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1193711 5193749 Pput_1060 Pseudomonas putida F1 glucose-6-phosphate 1-dehydrogenase YP_001266405.1 1192242 D 351746 CDS YP_001266406.1 148546304 5190709 1193698..1194411 1 NC_009512.1 TIGRFAM: 6-phosphogluconolactonase; 6-phosphogluconolactonase 1194411 5190709 Pput_1061 Pseudomonas putida F1 6-phosphogluconolactonase YP_001266406.1 1193698 D 351746 CDS YP_001266407.1 148546305 5190710 1194429..1195109 1 NC_009512.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1195109 5190710 Pput_1062 Pseudomonas putida F1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001266407.1 1194429 D 351746 CDS YP_001266408.1 148546306 5191350 1195329..1196048 1 NC_009512.1 hypothetical protein 1196048 5191350 Pput_1063 Pseudomonas putida F1 hypothetical protein YP_001266408.1 1195329 D 351746 CDS YP_001266409.1 148546307 5191351 1196053..1196781 1 NC_009512.1 hypothetical protein 1196781 5191351 Pput_1064 Pseudomonas putida F1 hypothetical protein YP_001266409.1 1196053 D 351746 CDS YP_001266410.1 148546308 5193862 complement(1196844..1198517) 1 NC_009512.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 1198517 5193862 Pput_1065 Pseudomonas putida F1 2-isopropylmalate synthase YP_001266410.1 1196844 R 351746 CDS YP_001266411.1 148546309 5193863 complement(1198985..1199812) 1 NC_009512.1 PFAM: peptidase M23B; peptidase M23B 1199812 5193863 Pput_1066 Pseudomonas putida F1 peptidase M23B YP_001266411.1 1198985 R 351746 CDS YP_001266412.1 148546310 5194413 complement(1199816..1201207) 1 NC_009512.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1201207 xseA 5194413 xseA Pseudomonas putida F1 exodeoxyribonuclease VII large subunit YP_001266412.1 1199816 R 351746 CDS YP_001266413.1 148546311 5194414 complement(1201401..1202279) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1202279 5194414 Pput_1068 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266413.1 1201401 R 351746 CDS YP_001266414.1 148546312 5192872 1202377..1203132 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 1203132 5192872 Pput_1069 Pseudomonas putida F1 hypothetical protein YP_001266414.1 1202377 D 351746 CDS YP_001266415.1 148546313 5192873 1203180..1203737 1 NC_009512.1 hypothetical protein 1203737 5192873 Pput_1070 Pseudomonas putida F1 hypothetical protein YP_001266415.1 1203180 D 351746 CDS YP_001266416.1 148546314 5192817 1203824..1205293 1 NC_009512.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1205293 5192817 Pput_1071 Pseudomonas putida F1 inosine 5'-monophosphate dehydrogenase YP_001266416.1 1203824 D 351746 CDS YP_001266417.1 148546315 5192818 1205372..1206949 1 NC_009512.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1206949 guaA 5192818 guaA Pseudomonas putida F1 GMP synthase YP_001266417.1 1205372 D 351746 CDS YP_001266418.1 148546316 5191697 complement(1207074..1208141) 1 NC_009512.1 PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 1208141 5191697 Pput_1073 Pseudomonas putida F1 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_001266418.1 1207074 R 351746 CDS YP_001266419.1 148546317 5191698 complement(1208138..1209613) 1 NC_009512.1 hypothetical protein 1209613 5191698 Pput_1074 Pseudomonas putida F1 hypothetical protein YP_001266419.1 1208138 R 351746 CDS YP_001266420.1 148546318 5195428 1209954..1211333 1 NC_009512.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 3 1211333 5195428 Pput_1075 Pseudomonas putida F1 multicopper oxidase, type 3 YP_001266420.1 1209954 D 351746 CDS YP_001266421.1 148546319 5194801 1211333..1211812 1 NC_009512.1 PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1211812 5194801 Pput_1076 Pseudomonas putida F1 zinc-binding CMP/dCMP deaminase YP_001266421.1 1211333 D 351746 CDS YP_001266422.1 148546320 5194802 complement(1211904..1213361) 1 NC_009512.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1213361 5194802 Pput_1077 Pseudomonas putida F1 putative transglycosylase YP_001266422.1 1211904 R 351746 CDS YP_001266423.1 148546321 5190762 1213699..1217598 1 NC_009512.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1217598 5190762 Pput_1078 Pseudomonas putida F1 phosphoribosylformylglycinamidine synthase YP_001266423.1 1213699 D 351746 CDS YP_001266424.1 148546322 5190763 1217602..1217913 1 NC_009512.1 hypothetical protein 1217913 5190763 Pput_1079 Pseudomonas putida F1 hypothetical protein YP_001266424.1 1217602 D 351746 CDS YP_001266425.1 148546323 5191746 complement(1218017..1218778) 1 NC_009512.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1218778 5191746 Pput_1080 Pseudomonas putida F1 Sec-independent protein translocase subunit TatC YP_001266425.1 1218017 R 351746 CDS YP_001266426.1 148546324 5191747 complement(1218775..1219065) 1 NC_009512.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB 1219065 5191747 Pput_1081 Pseudomonas putida F1 twin-arginine translocation protein subunit TatB YP_001266426.1 1218775 R 351746 CDS YP_001266427.1 148546325 5192329 complement(1219065..1219298) 1 NC_009512.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 1219298 5192329 Pput_1082 Pseudomonas putida F1 twin arginine-targeting protein translocase YP_001266427.1 1219065 R 351746 CDS YP_001266428.1 148546326 5192330 1219444..1220409 1 NC_009512.1 PFAM: General secretion pathway protein K; general secretion pathway protein K 1220409 5192330 Pput_1083 Pseudomonas putida F1 general secretion pathway protein K YP_001266428.1 1219444 D 351746 CDS YP_001266429.1 148546327 5191221 complement(1220539..1222614) 1 NC_009512.1 PFAM: protein of unknown function DUF839; hypothetical protein 1222614 5191221 Pput_1084 Pseudomonas putida F1 hypothetical protein YP_001266429.1 1220539 R 351746 CDS YP_001266430.1 148546328 5191222 1222839..1224479 1 NC_009512.1 lipoprotein UxpA 1224479 5191222 Pput_1085 Pseudomonas putida F1 lipoprotein UxpA YP_001266430.1 1222839 D 351746 CDS YP_001266431.1 148546329 5194844 1224479..1224901 1 NC_009512.1 hypothetical protein 1224901 5194844 Pput_1086 Pseudomonas putida F1 hypothetical protein YP_001266431.1 1224479 D 351746 CDS YP_001266432.1 148546330 5194845 1224905..1226659 1 NC_009512.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 1226659 5194845 Pput_1087 Pseudomonas putida F1 general secretion pathway protein D YP_001266432.1 1224905 D 351746 CDS YP_001266433.1 148546331 5190558 1226659..1228107 1 NC_009512.1 PFAM: type II secretion system protein E; type II secretion system protein E 1228107 5190558 Pput_1088 Pseudomonas putida F1 type II secretion system protein E YP_001266433.1 1226659 D 351746 CDS YP_001266434.1 148546332 5190559 1228111..1229313 1 NC_009512.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; general secretion pathway protein F 1229313 5190559 Pput_1089 Pseudomonas putida F1 general secretion pathway protein F YP_001266434.1 1228111 D 351746 CDS YP_001266435.1 148546333 5194728 1229331..1229765 1 NC_009512.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 1229765 5194728 Pput_1090 Pseudomonas putida F1 general secretion pathway protein G YP_001266435.1 1229331 D 351746 CDS YP_001266436.1 148546334 5194729 1229768..1230199 1 NC_009512.1 TIGRFAM: general secretion pathway protein H; general secretion pathway protein H 1230199 5194729 Pput_1091 Pseudomonas putida F1 general secretion pathway protein H YP_001266436.1 1229768 D 351746 CDS YP_001266437.1 148546335 5190174 1230196..1230564 1 NC_009512.1 PFAM: type II secretion system protein I/J; type II secretion system protein I/J 1230564 5190174 Pput_1092 Pseudomonas putida F1 type II secretion system protein I/J YP_001266437.1 1230196 D 351746 CDS YP_001266438.1 148546336 5190175 1230561..1231151 1 NC_009512.1 hypothetical protein 1231151 5190175 Pput_1093 Pseudomonas putida F1 hypothetical protein YP_001266438.1 1230561 D 351746 CDS YP_001266439.1 148546337 5192819 1231148..1232224 1 NC_009512.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; general secretion pathway protein L 1232224 5192819 Pput_1094 Pseudomonas putida F1 general secretion pathway protein L YP_001266439.1 1231148 D 351746 CDS YP_001266440.1 148546338 5192820 1232221..1232607 1 NC_009512.1 hypothetical protein 1232607 5192820 Pput_1095 Pseudomonas putida F1 hypothetical protein YP_001266440.1 1232221 D 351746 CDS YP_001266441.1 148546339 5190629 1232604..1233266 1 NC_009512.1 hypothetical protein 1233266 5190629 Pput_1096 Pseudomonas putida F1 hypothetical protein YP_001266441.1 1232604 D 351746 CDS YP_001266442.1 148546340 5190630 complement(1233560..1234321) 1 NC_009512.1 PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; FAD-binding 9, siderophore-interacting domain-containing protein 1234321 5190630 Pput_1097 Pseudomonas putida F1 FAD-binding 9, siderophore-interacting domain-containing protein YP_001266442.1 1233560 R 351746 CDS YP_001266443.1 148546341 5193334 complement(1234314..1234859) 1 NC_009512.1 PFAM: transcriptional regulator PadR family protein; PadR-like family transcriptional regulator 1234859 5193334 Pput_1098 Pseudomonas putida F1 PadR-like family transcriptional regulator YP_001266443.1 1234314 R 351746 CDS YP_001266444.1 148546342 5193335 complement(1234949..1238098) 1 NC_009512.1 membrane carboxypeptidase 1238098 5193335 Pput_1099 Pseudomonas putida F1 membrane carboxypeptidase YP_001266444.1 1234949 R 351746 CDS YP_001266445.1 148546343 5193691 1238487..1239905 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1239905 5193691 Pput_1100 Pseudomonas putida F1 amino acid permease-associated protein YP_001266445.1 1238487 D 351746 CDS YP_001266446.1 148546344 5191813 complement(1239942..1241561) 1 NC_009512.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase 1241561 5191813 Pput_1101 Pseudomonas putida F1 glutamate synthase YP_001266446.1 1239942 R 351746 CDS YP_001266447.1 148546345 5191814 complement(1241844..1246124) 1 NC_009512.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1246124 5191814 Pput_1102 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001266447.1 1241844 R 351746 CDS YP_001266448.1 148546346 5193452 1246261..1246674 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 1246674 5193452 Pput_1103 Pseudomonas putida F1 NUDIX hydrolase YP_001266448.1 1246261 D 351746 CDS YP_001266449.1 148546347 5193453 complement(1246658..1247575) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1247575 5193453 Pput_1104 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266449.1 1246658 R 351746 CDS YP_001266450.1 148546348 5193028 1247771..1248766 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1248766 5193028 Pput_1105 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001266450.1 1247771 D 351746 CDS YP_001266451.1 148546349 5193029 complement(1248884..1249219) 1 NC_009512.1 PFAM: GlpM family protein; GlpM family protein 1249219 5193029 Pput_1106 Pseudomonas putida F1 GlpM family protein YP_001266451.1 1248884 R 351746 CDS YP_001266452.1 148546350 5192826 complement(1249243..1250571) 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 1250571 5192826 Pput_1107 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001266452.1 1249243 R 351746 CDS YP_001266453.1 148546351 5192827 complement(1250568..1252472) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1252472 5192827 Pput_1108 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266453.1 1250568 R 351746 CDS YP_001266454.1 148546352 5192396 complement(1252541..1253275) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1253275 5192396 Pput_1109 Pseudomonas putida F1 ABC transporter-like protein YP_001266454.1 1252541 R 351746 CDS YP_001266455.1 148546353 5192397 complement(1253272..1253943) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1253943 5192397 Pput_1110 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001266455.1 1253272 R 351746 CDS YP_001266456.1 148546354 5190605 complement(1253944..1254690) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1254690 5190605 Pput_1111 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001266456.1 1253944 R 351746 CDS YP_001266457.1 148546355 5190606 complement(1254836..1255753) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1255753 5190606 Pput_1112 Pseudomonas putida F1 extracellular solute-binding protein YP_001266457.1 1254836 R 351746 CDS YP_001266458.1 148546356 5195426 1256086..1260405 1 NC_009512.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein 1260405 5195426 Pput_1113 Pseudomonas putida F1 hypothetical protein YP_001266458.1 1256086 D 351746 CDS YP_001266459.1 148546357 5195427 complement(1260433..1261971) 1 NC_009512.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 1261971 glpD 5195427 glpD Pseudomonas putida F1 glycerol-3-phosphate dehydrogenase YP_001266459.1 1260433 R 351746 CDS YP_001266460.1 148546358 5194156 complement(1262264..1263124) 1 NC_009512.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 1263124 5194156 Pput_1115 Pseudomonas putida F1 DeoR family transcriptional regulator YP_001266460.1 1262264 R 351746 CDS YP_001266461.1 148546359 5194157 complement(1263121..1264620) 1 NC_009512.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1264620 glpK 5194157 glpK Pseudomonas putida F1 glycerol kinase YP_001266461.1 1263121 R 351746 CDS YP_001266462.1 148546360 5194652 complement(1264672..1265523) 1 NC_009512.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; MIP family channel protein 1265523 5194652 Pput_1117 Pseudomonas putida F1 MIP family channel protein YP_001266462.1 1264672 R 351746 CDS YP_001266463.1 148546361 5194653 1265826..1266296 1 NC_009512.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 1266296 5194653 Pput_1118 Pseudomonas putida F1 ybaK/ebsC protein YP_001266463.1 1265826 D 351746 CDS YP_001266464.1 148546362 5191340 complement(1266417..1267526) 1 NC_009512.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1267526 5191340 Pput_1119 Pseudomonas putida F1 ABC transporter-like protein YP_001266464.1 1266417 R 351746 CDS YP_001266465.1 148546363 5191341 complement(1267523..1268443) 1 NC_009512.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1268443 5191341 Pput_1120 Pseudomonas putida F1 ornithine carbamoyltransferase YP_001266465.1 1267523 R 351746 CDS YP_001266466.1 148546364 5192681 1268818..1270926 1 NC_009512.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region 1270926 5192681 Pput_1121 Pseudomonas putida F1 molydopterin dinucleotide-binding region YP_001266466.1 1268818 D 351746 CDS YP_001266467.1 148546365 5192682 1270895..1271353 1 NC_009512.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 1271353 5192682 Pput_1122 Pseudomonas putida F1 glutaredoxin-like protein YP_001266467.1 1270895 D 351746 CDS YP_001266468.1 148546366 5194461 complement(1271411..1271884) 1 NC_009512.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin 1271884 5194461 Pput_1123 Pseudomonas putida F1 bacterioferritin YP_001266468.1 1271411 R 351746 CDS YP_001266469.1 148546367 5194462 complement(1272084..1272302) 1 NC_009512.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 1272302 5194462 Pput_1124 Pseudomonas putida F1 BFD/(2Fe-2S)-binding domain-containing protein YP_001266469.1 1272084 R 351746 CDS YP_001266470.1 148546368 5195138 1272527..1273129 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 1273129 5195138 Pput_1125 Pseudomonas putida F1 alkyl hydroperoxide reductase YP_001266470.1 1272527 D 351746 CDS YP_001266471.1 148546369 5191610 complement(1273289..1273963) 1 NC_009512.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1273963 5191610 Pput_1126 Pseudomonas putida F1 ribonuclease T YP_001266471.1 1273289 R 351746 CDS YP_001266472.1 148546370 5191611 complement(1273960..1275006) 1 NC_009512.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1275006 5191611 Pput_1127 Pseudomonas putida F1 dihydroorotase YP_001266472.1 1273960 R 351746 CDS YP_001266473.1 148546371 5195208 1275137..1276078 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1276078 5195208 Pput_1128 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266473.1 1275137 D 351746 CDS YP_001266474.1 148546372 5195209 1276671..1277888 1 NC_009512.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1277888 5195209 Pput_1129 Pseudomonas putida F1 argininosuccinate synthase YP_001266474.1 1276671 D 351746 CDS YP_001266475.1 148546373 5194432 complement(1277956..1278438) 1 NC_009512.1 hypothetical protein 1278438 5194432 Pput_1130 Pseudomonas putida F1 hypothetical protein YP_001266475.1 1277956 R 351746 CDS YP_001266476.1 148546374 5194433 1278720..1279430 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 1279430 5194433 Pput_1131 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001266476.1 1278720 D 351746 CDS YP_001266477.1 148546375 5190385 complement(1279501..1279677) 1 NC_009512.1 hypothetical protein 1279677 5190385 Pput_1132 Pseudomonas putida F1 hypothetical protein YP_001266477.1 1279501 R 351746 CDS YP_001266478.1 148546376 5190386 complement(1279782..1280789) 1 NC_009512.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 1280789 5190386 Pput_1133 Pseudomonas putida F1 endonuclease III YP_001266478.1 1279782 R 351746 CDS YP_001266479.1 148546377 5191490 complement(1280942..1281544) 1 NC_009512.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; RnfABCDGE type electron transport complex subunit G 1281544 5191490 Pput_1134 Pseudomonas putida F1 RnfABCDGE type electron transport complex subunit G YP_001266479.1 1280942 R 351746 CDS YP_001266480.1 148546378 5191491 complement(1281541..1282512) 1 NC_009512.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D 1282512 5191491 Pput_1135 Pseudomonas putida F1 RnfABCDGE type electron transport complex subunit D YP_001266480.1 1281541 R 351746 CDS YP_001266481.1 148546379 5192941 complement(1282509..1283057) 1 NC_009512.1 NADH:ubiquinone oxidoreductase subunit RnfA-like protein 1283057 5192941 Pput_1136 Pseudomonas putida F1 NADH:ubiquinone oxidoreductase subunit RnfA-like protein YP_001266481.1 1282509 R 351746 CDS YP_001266482.1 148546380 5192942 complement(1283164..1285296) 1 NC_009512.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1285296 metG 5192942 metG Pseudomonas putida F1 methionyl-tRNA synthetase YP_001266482.1 1283164 R 351746 CDS YP_001266483.1 148546381 5191926 1285362..1286456 1 NC_009512.1 PFAM: protein of unknown function DUF59; hypothetical protein 1286456 5191926 Pput_1138 Pseudomonas putida F1 hypothetical protein YP_001266483.1 1285362 D 351746 CDS YP_001266484.1 148546382 5191927 complement(1286708..1286917) 1 NC_009512.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1286917 5191927 Pput_1139 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001266484.1 1286708 R 351746 CDS YP_001266485.1 148546383 5194356 1287245..1287811 1 NC_009512.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1287811 dcd 5194356 dcd Pseudomonas putida F1 deoxycytidine triphosphate deaminase YP_001266485.1 1287245 D 351746 CDS YP_001266486.1 148546384 5194357 1287906..1288133 1 NC_009512.1 hypothetical protein 1288133 5194357 Pput_1141 Pseudomonas putida F1 hypothetical protein YP_001266486.1 1287906 D 351746 CDS YP_001266487.1 148546385 5191098 complement(1288140..1288790) 1 NC_009512.1 ICC-like phosphoesterase 1288790 5191098 Pput_1142 Pseudomonas putida F1 ICC-like phosphoesterase YP_001266487.1 1288140 R 351746 CDS YP_001266488.1 148546386 5191099 complement(1288787..1291237) 1 NC_009512.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1291237 5191099 Pput_1143 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001266488.1 1288787 R 351746 CDS YP_001266489.1 148546387 5192986 complement(1291305..1292420) 1 NC_009512.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1292420 5192986 Pput_1144 Pseudomonas putida F1 succinylglutamate desuccinylase/aspartoacylase YP_001266489.1 1291305 R 351746 CDS YP_001266490.1 148546388 5192987 complement(1292534..1294192) 1 NC_009512.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 1294192 5192987 Pput_1145 Pseudomonas putida F1 ATP-dependent DNA ligase YP_001266490.1 1292534 R 351746 CDS YP_001266491.1 148546389 5192457 complement(1294189..1295205) 1 NC_009512.1 RNA procession exonuclease-like protein 1295205 5192457 Pput_1146 Pseudomonas putida F1 RNA procession exonuclease-like protein YP_001266491.1 1294189 R 351746 CDS YP_001266492.1 148546390 5192458 complement(1295332..1297773) 1 NC_009512.1 PFAM: peptidase S45, penicillin amidase; penicillin amidase 1297773 5192458 Pput_1147 Pseudomonas putida F1 penicillin amidase YP_001266492.1 1295332 R 351746 CDS YP_001266493.1 148546391 5192137 complement(1297877..1299217) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1299217 5192137 Pput_1148 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266493.1 1297877 R 351746 CDS YP_001266494.1 148546392 5192138 1299399..1300103 1 NC_009512.1 Serine O-acetyltransferase 1300103 5192138 Pput_1149 Pseudomonas putida F1 Serine O-acetyltransferase YP_001266494.1 1299399 D 351746 CDS YP_001266495.1 148546393 5193418 1300100..1300888 1 NC_009512.1 related to alanyl-tRNA synthetase HxxxH domain; synthetase 1300888 5193418 Pput_1150 Pseudomonas putida F1 synthetase YP_001266495.1 1300100 D 351746 CDS YP_001266496.1 148546394 5195159 1300885..1302096 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1302096 5195159 Pput_1151 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266496.1 1300885 D 351746 CDS YP_001266497.1 148546395 5195160 1302093..1302995 1 NC_009512.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1302995 5195160 Pput_1152 Pseudomonas putida F1 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_001266497.1 1302093 D 351746 CDS YP_001266498.1 148546396 5190211 complement(1303163..1303360) 1 NC_009512.1 PFAM: SEC-C motif domain protein; SecC motif-containing protein 1303360 5190211 Pput_1153 Pseudomonas putida F1 SecC motif-containing protein YP_001266498.1 1303163 R 351746 CDS YP_001266499.1 148546397 5190212 complement(1303368..1303871) 1 NC_009512.1 SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein 1303871 5190212 Pput_1154 Pseudomonas putida F1 water stress/hypersensitive response protein YP_001266499.1 1303368 R 351746 CDS YP_001266500.1 148546398 5193887 complement(1303844..1304320) 1 NC_009512.1 PFAM: SEC-C motif domain protein; hypothetical protein 1304320 5193887 Pput_1155 Pseudomonas putida F1 hypothetical protein YP_001266500.1 1303844 R 351746 CDS YP_001266501.1 148546399 5193888 complement(1304323..1304817) 1 NC_009512.1 hypothetical protein 1304817 5193888 Pput_1156 Pseudomonas putida F1 hypothetical protein YP_001266501.1 1304323 R 351746 CDS YP_001266502.1 148546400 5195204 1304977..1305669 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1305669 5195204 Pput_1157 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266502.1 1304977 D 351746 CDS YP_001266503.1 148546401 5195205 1305759..1306478 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1306478 5195205 Pput_1158 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266503.1 1305759 D 351746 CDS YP_001266504.1 148546402 5192110 1306577..1306852 1 NC_009512.1 PFAM: protein of unknown function DUF1145; hypothetical protein 1306852 5192110 Pput_1159 Pseudomonas putida F1 hypothetical protein YP_001266504.1 1306577 D 351746 CDS YP_001266505.1 148546403 5192111 complement(1306975..1307439) 1 NC_009512.1 hypothetical protein 1307439 5192111 Pput_1160 Pseudomonas putida F1 hypothetical protein YP_001266505.1 1306975 R 351746 CDS YP_001266506.1 148546404 5192840 1307538..1309682 1 NC_009512.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1309682 dinG 5192840 dinG Pseudomonas putida F1 ATP-dependent DNA helicase DinG YP_001266506.1 1307538 D 351746 CDS YP_001266507.1 148546405 5192841 1309762..1311996 1 NC_009512.1 beta-agarase 1311996 5192841 Pput_1162 Pseudomonas putida F1 beta-agarase YP_001266507.1 1309762 D 351746 CDS YP_001266508.1 148546406 5193785 1312007..1313275 1 NC_009512.1 PFAM: beta-lactamase; beta-lactamase 1313275 5193785 Pput_1163 Pseudomonas putida F1 beta-lactamase YP_001266508.1 1312007 D 351746 CDS YP_001266509.1 148546407 5193786 1313375..1314352 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1314352 5193786 Pput_1164 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266509.1 1313375 D 351746 CDS YP_001266510.1 148546408 5191831 1314372..1315019 1 NC_009512.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1315019 5191831 Pput_1165 Pseudomonas putida F1 pyridoxamine 5'-phosphate oxidase YP_001266510.1 1314372 D 351746 CDS YP_001266511.1 148546409 5191832 complement(1315059..1315292) 1 NC_009512.1 hypothetical protein 1315292 5191832 Pput_1166 Pseudomonas putida F1 hypothetical protein YP_001266511.1 1315059 R 351746 CDS YP_001266512.1 148546410 5194232 1315440..1315904 1 NC_009512.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 1315904 5194232 Pput_1167 Pseudomonas putida F1 17 kDa surface antigen YP_001266512.1 1315440 D 351746 CDS YP_001266513.1 148546411 5194233 complement(1315974..1317167) 1 NC_009512.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1317167 nhaA 5194233 nhaA Pseudomonas putida F1 pH-dependent sodium/proton antiporter YP_001266513.1 1315974 R 351746 CDS YP_001266514.1 148546412 5191296 complement(1317445..1319076) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1319076 5191296 Pput_1169 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266514.1 1317445 R 351746 CDS YP_001266515.1 148546413 5191297 complement(1319156..1319830) 1 NC_009512.1 hypothetical protein 1319830 5191297 Pput_1170 Pseudomonas putida F1 hypothetical protein YP_001266515.1 1319156 R 351746 CDS YP_001266516.1 148546414 5190334 complement(1319919..1320620) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1320620 5190334 Pput_1171 Pseudomonas putida F1 ABC transporter-like protein YP_001266516.1 1319919 R 351746 CDS YP_001266517.1 148546415 5190335 complement(1320621..1321388) 1 NC_009512.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 1321388 livG 5190335 livG Pseudomonas putida F1 leucine/isoleucine/valine transporter ATP-binding subunit YP_001266517.1 1320621 R 351746 CDS YP_001266518.1 148546416 5193542 complement(1321385..1322641) 1 NC_009512.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease 1322641 livM 5193542 livM Pseudomonas putida F1 leucine/isoleucine/valine transporter permease YP_001266518.1 1321385 R 351746 CDS YP_001266519.1 148546417 5193543 complement(1322638..1323561) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 1323561 5193543 Pput_1174 Pseudomonas putida F1 inner-membrane translocator YP_001266519.1 1322638 R 351746 CDS YP_001266520.1 148546418 5193389 complement(1323747..1324862) 1 NC_009512.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1324862 5193389 Pput_1175 Pseudomonas putida F1 extracellular ligand-binding receptor YP_001266520.1 1323747 R 351746 CDS YP_001266521.1 148546419 5193528 1325223..1325534 1 NC_009512.1 hypothetical protein 1325534 5193528 Pput_1176 Pseudomonas putida F1 hypothetical protein YP_001266521.1 1325223 D 351746 CDS YP_001266522.1 148546420 5193529 1325727..1326614 1 NC_009512.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1326614 5193529 Pput_1177 Pseudomonas putida F1 3-hydroxyisobutyrate dehydrogenase YP_001266522.1 1325727 D 351746 CDS YP_001266523.1 148546421 5194213 complement(1326514..1328778) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase 1328778 5194213 Pput_1178 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001266523.1 1326514 R 351746 CDS YP_001266524.1 148546422 5194214 complement(1329055..1331901) 1 NC_009512.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 1331901 5194214 Pput_1179 Pseudomonas putida F1 ATP-dependent helicase HepA YP_001266524.1 1329055 R 351746 CDS YP_001266525.1 148546423 5192530 1332052..1332747 1 NC_009512.1 hypothetical protein 1332747 5192530 Pput_1180 Pseudomonas putida F1 hypothetical protein YP_001266525.1 1332052 D 351746 CDS YP_001266526.1 148546424 5192531 1332811..1333140 1 NC_009512.1 hypothetical protein 1333140 5192531 Pput_1181 Pseudomonas putida F1 hypothetical protein YP_001266526.1 1332811 D 351746 CDS YP_001266527.1 148546425 5194943 1333208..1333369 1 NC_009512.1 hypothetical protein 1333369 5194943 Pput_1182 Pseudomonas putida F1 hypothetical protein YP_001266527.1 1333208 D 351746 CDS YP_001266528.1 148546426 5194944 1333505..1333621 1 NC_009512.1 hypothetical protein 1333621 5194944 Pput_1183 Pseudomonas putida F1 hypothetical protein YP_001266528.1 1333505 D 351746 CDS YP_001266529.1 148546427 5194109 1333827..1335815 1 NC_009512.1 PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein 1335815 5194109 Pput_1184 Pseudomonas putida F1 fusaric acid resistance protein YP_001266529.1 1333827 D 351746 CDS YP_001266530.1 148546428 5194110 1335802..1336008 1 NC_009512.1 PFAM: protein of unknown function DUF1656; hypothetical protein 1336008 5194110 Pput_1185 Pseudomonas putida F1 hypothetical protein YP_001266530.1 1335802 D 351746 CDS YP_001266531.1 148546429 5194387 1336021..1336890 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 1336890 5194387 Pput_1186 Pseudomonas putida F1 secretion protein HlyD family protein YP_001266531.1 1336021 D 351746 CDS YP_001266532.1 148546430 5194388 1337114..1337452 1 NC_009512.1 hypothetical protein 1337452 5194388 Pput_1187 Pseudomonas putida F1 hypothetical protein YP_001266532.1 1337114 D 351746 CDS YP_001266533.1 148546431 5195165 complement(1337467..1340052) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 1340052 5195165 Pput_1188 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001266533.1 1337467 R 351746 CDS YP_001266534.1 148546432 5195166 complement(1340104..1341177) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; diguanylate cyclase 1341177 5195166 Pput_1189 Pseudomonas putida F1 diguanylate cyclase YP_001266534.1 1340104 R 351746 CDS YP_001266535.1 148546433 5190277 complement(1341459..1342355) 1 NC_009512.1 formate/nitrate transporter 1342355 5190277 Pput_1190 Pseudomonas putida F1 formate/nitrate transporter YP_001266535.1 1341459 R 351746 CDS YP_001266536.1 148546434 5194020 1348598..1350241 1 NC_009512.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1350241 5194020 Pput_1191 Pseudomonas putida F1 acetolactate synthase YP_001266536.1 1348598 D 351746 CDS YP_001266537.1 148546435 5194018 1350679..1351575 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1351575 5194018 Pput_1192 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001266537.1 1350679 D 351746 CDS YP_001266538.1 148546436 5194019 1351586..1352740 1 NC_009512.1 hypothetical protein 1352740 5194019 Pput_1193 Pseudomonas putida F1 hypothetical protein YP_001266538.1 1351586 D 351746 CDS YP_001266539.1 148546437 5192377 1352737..1353726 1 NC_009512.1 PFAM: Asparaginase/glutaminase; asparaginase/glutaminase 1353726 5192377 Pput_1194 Pseudomonas putida F1 asparaginase/glutaminase YP_001266539.1 1352737 D 351746 CDS YP_001266540.1 148546438 5192378 1353818..1354369 1 NC_009512.1 TIGRFAM: yecA family protein; yecA family protein 1354369 5192378 Pput_1195 Pseudomonas putida F1 yecA family protein YP_001266540.1 1353818 D 351746 CDS YP_001266541.1 148546439 5190766 1354544..1355173 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 1355173 5190766 Pput_1196 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001266541.1 1354544 D 351746 CDS YP_001266542.1 148546440 5190767 1355201..1357237 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1357237 5190767 Pput_1197 Pseudomonas putida F1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001266542.1 1355201 D 351746 CDS YP_001266543.1 148546441 5191150 1357346..1358242 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1358242 5191150 Pput_1198 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266543.1 1357346 D 351746 CDS YP_001266544.1 148546442 5191151 complement(1358316..1359185) 1 NC_009512.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 1359185 5191151 Pput_1199 Pseudomonas putida F1 aldose 1-epimerase YP_001266544.1 1358316 R 351746 CDS YP_001266545.1 148546443 5192488 complement(1359210..1360133) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1360133 5192488 Pput_1200 Pseudomonas putida F1 hypothetical protein YP_001266545.1 1359210 R 351746 CDS YP_001266546.1 148546444 5190524 complement(1360188..1361468) 1 NC_009512.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 1361468 5190524 Pput_1201 Pseudomonas putida F1 TRAP dicarboxylate transporter subunit DctM YP_001266546.1 1360188 R 351746 CDS YP_001266547.1 148546445 5190525 complement(1361469..1361996) 1 NC_009512.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1361996 5190525 Pput_1202 Pseudomonas putida F1 tripartite ATP-independent periplasmic transporter DctQ YP_001266547.1 1361469 R 351746 CDS YP_001266548.1 148546446 5194813 complement(1362063..1363034) 1 NC_009512.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 1363034 5194813 Pput_1203 Pseudomonas putida F1 TRAP dicarboxylate transporter subunit DctP YP_001266548.1 1362063 R 351746 CDS YP_001266549.1 148546447 5194814 complement(1363099..1363980) 1 NC_009512.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 1363980 5194814 Pput_1204 Pseudomonas putida F1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001266549.1 1363099 R 351746 CDS YP_001266550.1 148546448 5190726 complement(1364003..1364809) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1364809 5190726 Pput_1205 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001266550.1 1364003 R 351746 CDS YP_001266551.1 148546449 5190727 complement(1365367..1366605) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 1366605 5190727 Pput_1206 Pseudomonas putida F1 outer membrane porin YP_001266551.1 1365367 R 351746 CDS YP_001266552.1 148546450 5194002 1367364..1367603 1 NC_009512.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 1367603 5194002 Pput_1207 Pseudomonas putida F1 bifunctional antitoxin/transcriptional repressor RelB YP_001266552.1 1367364 D 351746 CDS YP_001266553.1 148546451 5194003 1367634..1367879 1 NC_009512.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 1367879 5194003 Pput_1208 Pseudomonas putida F1 plasmid stabilization system protein YP_001266553.1 1367634 D 351746 CDS YP_001266554.1 148546452 5195070 complement(1368317..1369564) 1 NC_009512.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1369564 5195070 Pput_1209 Pseudomonas putida F1 ribonucleotide-diphosphate reductase subunit beta YP_001266554.1 1368317 R 351746 CDS YP_001266555.1 148546453 5195071 complement(1370766..1373645) 1 NC_009512.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1373645 5195071 Pput_1210 Pseudomonas putida F1 ribonucleotide-diphosphate reductase subunit alpha YP_001266555.1 1370766 R 351746 CDS YP_001266556.1 148546454 5194354 1374393..1375091 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1375091 5194354 Pput_1211 Pseudomonas putida F1 two component transcriptional regulator YP_001266556.1 1374393 D 351746 CDS YP_001266557.1 148546455 5194355 1375088..1376695 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1376695 5194355 Pput_1212 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266557.1 1375088 D 351746 CDS YP_001266558.1 148546456 5195303 complement(1376699..1377400) 1 NC_009512.1 PFAM: 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 1377400 5195303 Pput_1213 Pseudomonas putida F1 4'-phosphopantetheinyl transferase YP_001266558.1 1376699 R 351746 CDS YP_001266559.1 148546457 5195304 complement(1377648..1378439) 1 NC_009512.1 PFAM: dienelactone hydrolase; dienelactone hydrolase 1378439 5195304 Pput_1214 Pseudomonas putida F1 dienelactone hydrolase YP_001266559.1 1377648 R 351746 CDS YP_001266560.1 148546458 5195511 1378569..1379174 1 NC_009512.1 outer membrane protein H1 1379174 5195511 Pput_1215 Pseudomonas putida F1 outer membrane protein H1 YP_001266560.1 1378569 D 351746 CDS YP_001266561.1 148546459 5195512 1379369..1380046 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1380046 5195512 Pput_1216 Pseudomonas putida F1 two component transcriptional regulator YP_001266561.1 1379369 D 351746 CDS YP_001266562.1 148546460 5191628 1380043..1381389 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1381389 5191628 Pput_1217 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266562.1 1380043 D 351746 CDS YP_001266563.1 148546461 5191629 1381739..1383061 1 NC_009512.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1383061 5191629 Pput_1218 Pseudomonas putida F1 C4-dicarboxylate transporter DctA YP_001266563.1 1381739 D 351746 CDS YP_001266564.1 148546462 5192129 1383244..1383402 1 NC_009512.1 hypothetical protein 1383402 5192129 Pput_1219 Pseudomonas putida F1 hypothetical protein YP_001266564.1 1383244 D 351746 CDS YP_001266565.1 148546463 5192130 complement(1383484..1384176) 1 NC_009512.1 PFAM: protein of unknown function UPF0066; hypothetical protein 1384176 5192130 Pput_1220 Pseudomonas putida F1 hypothetical protein YP_001266565.1 1383484 R 351746 CDS YP_001266566.1 148546464 5194614 complement(1384183..1384644) 1 NC_009512.1 PFAM: protein of unknown function DUF1456; hypothetical protein 1384644 5194614 Pput_1221 Pseudomonas putida F1 hypothetical protein YP_001266566.1 1384183 R 351746 CDS YP_001266567.1 148546465 5194615 complement(1384694..1385437) 1 NC_009512.1 PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1385437 5194615 Pput_1222 Pseudomonas putida F1 RNA-binding S4 domain-containing protein YP_001266567.1 1384694 R 351746 CDS YP_001266568.1 148546466 5191604 complement(1385524..1385979) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1385979 5191604 Pput_1223 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001266568.1 1385524 R 351746 CDS YP_001266569.1 148546467 5191605 1386274..1386828 1 NC_009512.1 hypothetical protein 1386828 5191605 Pput_1224 Pseudomonas putida F1 hypothetical protein YP_001266569.1 1386274 D 351746 CDS YP_001266570.1 148546468 5195531 1387026..1387871 1 NC_009512.1 hypothetical protein 1387871 5195531 Pput_1225 Pseudomonas putida F1 hypothetical protein YP_001266570.1 1387026 D 351746 CDS YP_001266571.1 148546469 5194124 1387868..1389586 1 NC_009512.1 hypothetical protein 1389586 5194124 Pput_1226 Pseudomonas putida F1 hypothetical protein YP_001266571.1 1387868 D 351746 CDS YP_001266572.1 148546470 5194125 1389641..1390390 1 NC_009512.1 hypothetical protein 1390390 5194125 Pput_1227 Pseudomonas putida F1 hypothetical protein YP_001266572.1 1389641 D 351746 CDS YP_001266573.1 148546471 5195005 complement(1390462..1391793) 1 NC_009512.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 1391793 rimO 5195005 rimO Pseudomonas putida F1 30S ribosomal protein S12 methylthiotransferase YP_001266573.1 1390462 R 351746 CDS YP_001266574.1 148546472 5195006 1392029..1393939 1 NC_009512.1 PFAM: K+ potassium transporter; K+ potassium transporter 1393939 5195006 Pput_1229 Pseudomonas putida F1 K+ potassium transporter YP_001266574.1 1392029 D 351746 CDS YP_001266575.1 148546473 5195243 complement(1393988..1395280) 1 NC_009512.1 PFAM: virulence factor family protein; virulence factor family protein 1395280 5195243 Pput_1230 Pseudomonas putida F1 virulence factor family protein YP_001266575.1 1393988 R 351746 CDS YP_001266576.1 148546474 5195244 complement(1395280..1397922) 1 NC_009512.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; hypothetical protein 1397922 5195244 Pput_1231 Pseudomonas putida F1 hypothetical protein YP_001266576.1 1395280 R 351746 CDS YP_001266577.1 148546475 5190188 1398898..1399962 1 NC_009512.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1399962 5190188 Pput_1232 Pseudomonas putida F1 DNA polymerase IV YP_001266577.1 1398898 D 351746 CDS YP_001266578.1 148546476 5194832 complement(1399989..1400942) 1 NC_009512.1 hypothetical protein 1400942 5194832 Pput_1233 Pseudomonas putida F1 hypothetical protein YP_001266578.1 1399989 R 351746 CDS YP_001266579.1 148546477 5193829 complement(1400963..1402678) 1 NC_009512.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1402678 5193829 Pput_1234 Pseudomonas putida F1 prolyl-tRNA synthetase YP_001266579.1 1400963 R 351746 CDS YP_001266580.1 148546478 5193830 complement(1402839..1404104) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 1404104 5193830 Pput_1235 Pseudomonas putida F1 outer membrane porin YP_001266580.1 1402839 R 351746 CDS YP_001266581.1 148546479 5194370 1404796..1405215 1 NC_009512.1 PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1405215 5194370 Pput_1236 Pseudomonas putida F1 histidine triad (HIT) protein YP_001266581.1 1404796 D 351746 CDS YP_001266582.1 148546480 5194371 1405217..1405423 1 NC_009512.1 PFAM: SlyX family protein; hypothetical protein 1405423 5194371 Pput_1237 Pseudomonas putida F1 hypothetical protein YP_001266582.1 1405217 D 351746 CDS YP_001266583.1 148546481 5192112 complement(1405545..1406138) 1 NC_009512.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1406138 5192112 Pput_1238 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001266583.1 1405545 R 351746 CDS YP_001266584.1 148546482 5192113 1406419..1406892 1 NC_009512.1 PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein 1406892 5192113 Pput_1239 Pseudomonas putida F1 Ferritin, Dps family protein YP_001266584.1 1406419 D 351746 CDS YP_001266585.1 148546483 5194451 1407279..1407608 1 NC_009512.1 hypothetical protein 1407608 5194451 Pput_1240 Pseudomonas putida F1 hypothetical protein YP_001266585.1 1407279 D 351746 CDS YP_001266586.1 148546484 5194452 1407703..1407924 1 NC_009512.1 TIGRFAM: putative regulatory protein, FmdB family; FmdB family regulatory protein 1407924 5194452 Pput_1241 Pseudomonas putida F1 FmdB family regulatory protein YP_001266586.1 1407703 D 351746 CDS YP_001266587.1 148546485 5194972 1408018..1409793 1 NC_009512.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1409793 aspS 5194972 aspS Pseudomonas putida F1 aspartyl-tRNA synthetase YP_001266587.1 1408018 D 351746 CDS YP_001266588.1 148546486 5194973 1409908..1410654 1 NC_009512.1 PFAM: protein of unknown function DUF28; hypothetical protein 1410654 5194973 Pput_1243 Pseudomonas putida F1 hypothetical protein YP_001266588.1 1409908 D 351746 CDS YP_001266589.1 148546487 5194023 1410840..1411364 1 NC_009512.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1411364 ruvC 5194023 ruvC Pseudomonas putida F1 Holliday junction resolvase YP_001266589.1 1410840 D 351746 CDS YP_001266590.1 148546488 5194024 1411474..1412091 1 NC_009512.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1412091 ruvA 5194024 ruvA Pseudomonas putida F1 Holliday junction DNA helicase RuvA YP_001266590.1 1411474 D 351746 CDS YP_001266591.1 148546489 5193685 1412088..1413134 1 NC_009512.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1413134 ruvB 5193685 ruvB Pseudomonas putida F1 Holliday junction DNA helicase RuvB YP_001266591.1 1412088 D 351746 CDS YP_001266592.1 148546490 5193686 1413260..1413712 1 NC_009512.1 TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; Pol-Pal system-associated acyl-CoA thioesterase 1413712 5193686 Pput_1247 Pseudomonas putida F1 Pol-Pal system-associated acyl-CoA thioesterase YP_001266592.1 1413260 D 351746 CDS YP_001266593.1 148546491 5191606 1413715..1414410 1 NC_009512.1 TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; Tol-Pal system protein TolQ 1414410 5191606 Pput_1248 Pseudomonas putida F1 Tol-Pal system protein TolQ YP_001266593.1 1413715 D 351746 CDS YP_001266594.1 148546492 5191607 1414425..1414877 1 NC_009512.1 TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport TolR 1414877 5191607 Pput_1249 Pseudomonas putida F1 biopolymer transport TolR YP_001266594.1 1414425 D 351746 CDS YP_001266595.1 148546493 5190272 1414877..1415995 1 NC_009512.1 TIGRFAM: TonB family protein; Tol-Pal system, TolA; PFAM: TolA family protein; Tol-Pal system protein TolA 1415995 5190272 Pput_1250 Pseudomonas putida F1 Tol-Pal system protein TolA YP_001266595.1 1414877 D 351746 CDS YP_001266596.1 148546494 5195525 1416022..1417293 1 NC_009512.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1417293 tolB 5195525 tolB Pseudomonas putida F1 translocation protein TolB YP_001266596.1 1416022 D 351746 CDS YP_001266597.1 148546495 5195526 1417348..1417848 1 NC_009512.1 TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 1417848 5195526 Pput_1252 Pseudomonas putida F1 peptidoglycan-associated lipoprotein YP_001266597.1 1417348 D 351746 CDS YP_001266598.1 148546496 5192010 1417855..1418661 1 NC_009512.1 TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; Tol-Pal system protein YbgF 1418661 5192010 Pput_1253 Pseudomonas putida F1 Tol-Pal system protein YbgF YP_001266598.1 1417855 D 351746 CDS YP_001266599.1 148546497 5192011 1418830..1419477 1 NC_009512.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 1419477 5192011 Pput_1254 Pseudomonas putida F1 radical SAM domain-containing protein YP_001266599.1 1418830 D 351746 CDS YP_001266600.1 148546498 5192657 1419495..1420169 1 NC_009512.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; exsB protein 1420169 5192657 Pput_1255 Pseudomonas putida F1 exsB protein YP_001266600.1 1419495 D 351746 CDS YP_001266601.1 148546499 5194900 complement(1420401..1421360) 1 NC_009512.1 PFAM: cation efflux protein; cation efflux protein 1421360 5194900 Pput_1256 Pseudomonas putida F1 cation efflux protein YP_001266601.1 1420401 R 351746 CDS YP_001266602.1 148546500 5191205 complement(1421503..1423569) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1423569 5191205 Pput_1257 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001266602.1 1421503 R 351746 CDS YP_001266603.1 148546501 5191206 complement(1423636..1424988) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1424988 5191206 Pput_1258 Pseudomonas putida F1 amino acid permease-associated protein YP_001266603.1 1423636 R 351746 CDS YP_001266604.1 148546502 5194008 1425436..1426944 1 NC_009512.1 PFAM: protein of unknown function DUF945; hypothetical protein 1426944 5194008 Pput_1259 Pseudomonas putida F1 hypothetical protein YP_001266604.1 1425436 D 351746 CDS YP_001266605.1 148546503 5194009 1427219..1428277 1 NC_009512.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1428277 5194009 Pput_1260 Pseudomonas putida F1 quinolinate synthetase YP_001266605.1 1427219 D 351746 CDS YP_001266606.1 148546504 5191638 complement(1428552..1429502) 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 1429502 5191638 Pput_1261 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001266606.1 1428552 R 351746 CDS YP_001266607.1 148546505 5191639 complement(1429760..1431196) 1 NC_009512.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 1431196 5191639 Pput_1262 Pseudomonas putida F1 peptidase M48, Ste24p YP_001266607.1 1429760 R 351746 CDS YP_001266608.1 148546506 5194770 1431319..1431558 1 NC_009512.1 PFAM: SirA family protein; SirA family protein 1431558 5194770 Pput_1263 Pseudomonas putida F1 SirA family protein YP_001266608.1 1431319 D 351746 CDS YP_001266609.1 148546507 5194771 1431579..1432649 1 NC_009512.1 PFAM: protein of unknown function UPF0118; hypothetical protein 1432649 5194771 Pput_1264 Pseudomonas putida F1 hypothetical protein YP_001266609.1 1431579 D 351746 CDS YP_001266610.1 148546508 5195424 complement(1432767..1433240) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 1433240 5195424 Pput_1265 Pseudomonas putida F1 alkyl hydroperoxide reductase YP_001266610.1 1432767 R 351746 CDS YP_001266611.1 148546509 5195425 complement(1433252..1433812) 1 NC_009512.1 glycine cleavage system regulatory protein-like protein 1433812 5195425 Pput_1266 Pseudomonas putida F1 glycine cleavage system regulatory protein-like protein YP_001266611.1 1433252 R 351746 CDS YP_001266612.1 148546510 5194352 1434072..1434959 1 NC_009512.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1434959 5194352 Pput_1267 Pseudomonas putida F1 dihydrodipicolinate synthase YP_001266612.1 1434072 D 351746 CDS YP_001266613.1 148546511 5194353 1434975..1436096 1 NC_009512.1 hypothetical protein 1436096 5194353 Pput_1268 Pseudomonas putida F1 hypothetical protein YP_001266613.1 1434975 D 351746 CDS YP_001266614.1 148546512 5195033 1436097..1436855 1 NC_009512.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1436855 5195033 Pput_1269 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001266614.1 1436097 D 351746 CDS YP_001266615.1 148546513 5195034 1436886..1437596 1 NC_009512.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1437596 5195034 Pput_1270 Pseudomonas putida F1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001266615.1 1436886 D 351746 CDS YP_001266616.1 148546514 5192285 complement(1437876..1438226) 1 NC_009512.1 TIGRFAM: Addiction module antidote protein, HI1420; putative transcriptional regulator 1438226 5192285 Pput_1271 Pseudomonas putida F1 putative transcriptional regulator YP_001266616.1 1437876 R 351746 CDS YP_001266617.1 148546515 5191916 complement(1438880..1439152) 1 NC_009512.1 hypothetical protein 1439152 5191916 Pput_1272 Pseudomonas putida F1 hypothetical protein YP_001266617.1 1438880 R 351746 CDS YP_001266618.1 148546516 5191389 complement(1439227..1439490) 1 NC_009512.1 hypothetical protein 1439490 5191389 Pput_1273 Pseudomonas putida F1 hypothetical protein YP_001266618.1 1439227 R 351746 CDS YP_001266619.1 148546517 5191390 1440131..1440991 1 NC_009512.1 PFAM: 17 kDa surface antigen; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; SH3 type 3 domain-containing protein 1440991 5191390 Pput_1274 Pseudomonas putida F1 SH3 type 3 domain-containing protein YP_001266619.1 1440131 D 351746 CDS YP_001266620.1 148546518 5190534 1441000..1442928 1 NC_009512.1 hypothetical protein 1442928 5190534 Pput_1275 Pseudomonas putida F1 hypothetical protein YP_001266620.1 1441000 D 351746 CDS YP_001266621.1 148546519 5193972 1442939..1444147 1 NC_009512.1 hypothetical protein 1444147 5193972 Pput_1276 Pseudomonas putida F1 hypothetical protein YP_001266621.1 1442939 D 351746 CDS YP_001266622.1 148546520 5193973 complement(1444243..1444860) 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 1444860 5193973 Pput_1277 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001266622.1 1444243 R 351746 CDS YP_001266623.1 148546521 5191420 1445051..1445242 1 NC_009512.1 hypothetical protein 1445242 5191420 Pput_1278 Pseudomonas putida F1 hypothetical protein YP_001266623.1 1445051 D 351746 CDS YP_001266624.1 148546522 5191421 1445570..1447207 1 NC_009512.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1447207 5191421 Pput_1279 Pseudomonas putida F1 malate:quinone oxidoreductase YP_001266624.1 1445570 D 351746 CDS YP_001266625.1 148546523 5190972 complement(1447340..1447675) 1 NC_009512.1 PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 1447675 5190972 Pput_1280 Pseudomonas putida F1 ArsR family transcriptional regulator YP_001266625.1 1447340 R 351746 CDS YP_001266626.1 148546524 5190973 1447725..1448816 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1448816 5190973 Pput_1281 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001266626.1 1447725 D 351746 CDS YP_001266627.1 148546525 5193191 complement(1448940..1450187) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1450187 5193191 Pput_1282 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266627.1 1448940 R 351746 CDS YP_001266628.1 148546526 5193192 complement(1450190..1451767) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 1451767 5193192 Pput_1283 Pseudomonas putida F1 aldehyde dehydrogenase YP_001266628.1 1450190 R 351746 CDS YP_001266629.1 148546527 5190728 complement(1451919..1452866) 1 NC_009512.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1452866 5190728 Pput_1284 Pseudomonas putida F1 dihydrodipicolinate synthetase YP_001266629.1 1451919 R 351746 CDS YP_001266630.1 148546528 5190729 complement(1452913..1453839) 1 NC_009512.1 PFAM: proline racemase; proline racemase 1453839 5190729 Pput_1285 Pseudomonas putida F1 proline racemase YP_001266630.1 1452913 R 351746 CDS YP_001266631.1 148546529 5194473 complement(1453863..1455476) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1455476 5194473 Pput_1286 Pseudomonas putida F1 amino acid permease-associated protein YP_001266631.1 1453863 R 351746 CDS YP_001266632.1 148546530 5194474 1455854..1456636 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-4 domain protein; AraC family transcriptional regulator 1456636 5194474 Pput_1287 Pseudomonas putida F1 AraC family transcriptional regulator YP_001266632.1 1455854 D 351746 CDS YP_001266633.1 148546531 5195534 complement(1456624..1457511) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1457511 5195534 Pput_1288 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266633.1 1456624 R 351746 CDS YP_001266634.1 148546532 5195535 1457653..1458192 1 NC_009512.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 1458192 5195535 Pput_1289 Pseudomonas putida F1 molybdenum cofactor biosynthesis protein B YP_001266634.1 1457653 D 351746 CDS YP_001266635.1 148546533 5194322 complement(1458277..1459176) 1 NC_009512.1 PFAM: protein of unknown function UPF0187; hypothetical protein 1459176 5194322 Pput_1290 Pseudomonas putida F1 hypothetical protein YP_001266635.1 1458277 R 351746 CDS YP_001266636.1 148546534 5194323 complement(1459197..1460201) 1 NC_009512.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1460201 moaA 5194323 moaA Pseudomonas putida F1 molybdenum cofactor biosynthesis protein A YP_001266636.1 1459197 R 351746 CDS YP_001266637.1 148546535 5193795 1460424..1462754 1 NC_009512.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 1462754 5193795 Pput_1292 Pseudomonas putida F1 oxidoreductase alpha (molybdopterin) subunit YP_001266637.1 1460424 D 351746 CDS YP_001266638.1 148546536 5193796 complement(1462864..1463358) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 1463358 5193796 Pput_1293 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001266638.1 1462864 R 351746 CDS YP_001266639.1 148546537 5192497 1463418..1464599 1 NC_009512.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; cystathionine gamma-lyase 1464599 5192497 Pput_1294 Pseudomonas putida F1 cystathionine gamma-lyase YP_001266639.1 1463418 D 351746 CDS YP_001266640.1 148546538 5192498 complement(1464812..1465048) 1 NC_009512.1 hypothetical protein 1465048 5192498 Pput_1295 Pseudomonas putida F1 hypothetical protein YP_001266640.1 1464812 R 351746 CDS YP_001266641.1 148546539 5194113 1465301..1466938 1 NC_009512.1 PFAM: sulfatase; protein of unknown function DUF1705; hypothetical protein 1466938 5194113 Pput_1296 Pseudomonas putida F1 hypothetical protein YP_001266641.1 1465301 D 351746 CDS YP_001266642.1 148546540 5194114 1467116..1468249 1 NC_009512.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; ribonuclease D 1468249 5194114 Pput_1297 Pseudomonas putida F1 ribonuclease D YP_001266642.1 1467116 D 351746 CDS YP_001266643.1 148546541 5195206 1468246..1468539 1 NC_009512.1 PFAM: protein of unknown function DUF709; hypothetical protein 1468539 5195206 Pput_1298 Pseudomonas putida F1 hypothetical protein YP_001266643.1 1468246 D 351746 CDS YP_001266644.1 148546542 5195207 1468542..1469474 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1469474 5195207 Pput_1299 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001266644.1 1468542 D 351746 CDS YP_001266645.1 148546543 5192697 complement(1469587..1470180) 1 NC_009512.1 PFAM: nitroreductase; nitroreductase 1470180 5192697 Pput_1300 Pseudomonas putida F1 nitroreductase YP_001266645.1 1469587 R 351746 CDS YP_001266646.1 148546544 5192178 1470326..1470775 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 1470775 5192178 Pput_1301 Pseudomonas putida F1 hypothetical protein YP_001266646.1 1470326 D 351746 CDS YP_001266647.1 148546545 5192179 1470817..1472025 1 NC_009512.1 hypothetical protein 1472025 5192179 Pput_1302 Pseudomonas putida F1 hypothetical protein YP_001266647.1 1470817 D 351746 CDS YP_001266648.1 148546546 5194644 complement(1472311..1472781) 1 NC_009512.1 PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1472781 5194644 Pput_1304 Pseudomonas putida F1 tRNA/rRNA methyltransferase SpoU YP_001266648.1 1472311 R 351746 CDS YP_001266649.1 148546547 5194587 complement(1472853..1473224) 1 NC_009512.1 PFAM: HNH endonuclease; SMART: HNH nuclease; hypothetical protein 1473224 5194587 Pput_1305 Pseudomonas putida F1 hypothetical protein YP_001266649.1 1472853 R 351746 CDS YP_001266650.1 148546548 5194568 complement(1473832..1475874) 1 NC_009512.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B 1475874 5194568 Pput_1306 Pseudomonas putida F1 oligopeptidase B YP_001266650.1 1473832 R 351746 CDS YP_001266651.1 148546549 5194569 1476054..1476551 1 NC_009512.1 hypothetical protein 1476551 5194569 Pput_1307 Pseudomonas putida F1 hypothetical protein YP_001266651.1 1476054 D 351746 CDS YP_001266652.1 148546550 5192233 1476566..1477339 1 NC_009512.1 PFAM: glutamine amidotransferase, class-II; class II glutamine amidotransferase 1477339 5192233 Pput_1308 Pseudomonas putida F1 class II glutamine amidotransferase YP_001266652.1 1476566 D 351746 CDS YP_001266653.1 148546551 5192234 1477349..1477870 1 NC_009512.1 hypothetical protein 1477870 5192234 Pput_1309 Pseudomonas putida F1 hypothetical protein YP_001266653.1 1477349 D 351746 CDS YP_001266654.1 148546552 5193230 complement(1478006..1478917) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1478917 5193230 Pput_1310 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266654.1 1478006 R 351746 CDS YP_001266655.1 148546553 5193231 1479048..1480334 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1480334 5193231 Pput_1311 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266655.1 1479048 D 351746 CDS YP_001266656.1 148546554 5194850 1480344..1481120 1 NC_009512.1 PFAM: LamB/YcsF family protein; LamB/YcsF family protein 1481120 5194850 Pput_1312 Pseudomonas putida F1 LamB/YcsF family protein YP_001266656.1 1480344 D 351746 CDS YP_001266657.1 148546555 5194851 1481120..1481806 1 NC_009512.1 PFAM: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 1481806 5194851 Pput_1313 Pseudomonas putida F1 allophanate hydrolase subunit 1 YP_001266657.1 1481120 D 351746 CDS YP_001266658.1 148546556 5193298 1481803..1482720 1 NC_009512.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 1482720 5193298 Pput_1314 Pseudomonas putida F1 urea amidolyase-like protein YP_001266658.1 1481803 D 351746 CDS YP_001266659.1 148546557 5193299 complement(1482838..1484016) 1 NC_009512.1 hypothetical protein 1484016 5193299 Pput_1315 Pseudomonas putida F1 hypothetical protein YP_001266659.1 1482838 R 351746 CDS YP_001266660.1 148546558 5191545 complement(1484030..1484875) 1 NC_009512.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 1484875 5191545 Pput_1316 Pseudomonas putida F1 ATPase YP_001266660.1 1484030 R 351746 CDS YP_001266661.1 148546559 5191546 complement(1485063..1486136) 1 NC_009512.1 hypothetical protein 1486136 5191546 Pput_1317 Pseudomonas putida F1 hypothetical protein YP_001266661.1 1485063 R 351746 CDS YP_001266662.1 148546560 5191753 1486269..1487243 1 NC_009512.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 1487243 5191753 Pput_1318 Pseudomonas putida F1 cysteine synthase A YP_001266662.1 1486269 D 351746 CDS YP_001266663.1 148546561 5191754 1487417..1488352 1 NC_009512.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 1488352 5191754 Pput_1319 Pseudomonas putida F1 aspartyl/asparaginyl beta-hydroxylase YP_001266663.1 1487417 D 351746 CDS YP_001266664.1 148546562 5191612 1488378..1488671 1 NC_009512.1 hypothetical protein 1488671 5191612 Pput_1320 Pseudomonas putida F1 hypothetical protein YP_001266664.1 1488378 D 351746 CDS YP_001266665.1 148546563 5191613 1488788..1489669 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1489669 5191613 Pput_1321 Pseudomonas putida F1 hypothetical protein YP_001266665.1 1488788 D 351746 CDS YP_001266666.1 148546564 5192923 complement(1489673..1490131) 1 NC_009512.1 hypothetical protein 1490131 5192923 Pput_1322 Pseudomonas putida F1 hypothetical protein YP_001266666.1 1489673 R 351746 CDS YP_001266667.1 148546565 5192924 complement(1490145..1491020) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1491020 5192924 Pput_1323 Pseudomonas putida F1 hypothetical protein YP_001266667.1 1490145 R 351746 CDS YP_001266668.1 148546566 5192661 1491225..1492940 1 NC_009512.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 1492940 aceK 5192661 aceK Pseudomonas putida F1 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_001266668.1 1491225 D 351746 CDS YP_001266669.1 148546567 5192662 complement(1492960..1493820) 1 NC_009512.1 hypothetical protein 1493820 5192662 Pput_1325 Pseudomonas putida F1 hypothetical protein YP_001266669.1 1492960 R 351746 CDS YP_001266670.1 148546568 5194342 1493951..1494787 1 NC_009512.1 SMART: RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 1494787 5194342 Pput_1326 Pseudomonas putida F1 RNA-binding S1 domain-containing protein YP_001266670.1 1493951 D 351746 CDS YP_001266671.1 148546569 5192641 complement(1494793..1495173) 1 NC_009512.1 hypothetical protein 1495173 5192641 Pput_1327 Pseudomonas putida F1 hypothetical protein YP_001266671.1 1494793 R 351746 CDS YP_001266672.1 148546570 5192642 1495409..1495588 1 NC_009512.1 PFAM: CsbD family protein; CsbD family protein 1495588 5192642 Pput_1328 Pseudomonas putida F1 CsbD family protein YP_001266672.1 1495409 D 351746 CDS YP_001266673.1 148546571 5194596 1495749..1496705 1 NC_009512.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; putative ribonuclease BN 1496705 5194596 Pput_1329 Pseudomonas putida F1 putative ribonuclease BN YP_001266673.1 1495749 D 351746 CDS YP_001266674.1 148546572 5194597 1496705..1497241 1 NC_009512.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1497241 5194597 Pput_1330 Pseudomonas putida F1 peptide deformylase YP_001266674.1 1496705 D 351746 CDS YP_001266675.1 148546573 5194332 complement(1497196..1497636) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1497636 5194332 Pput_1331 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001266675.1 1497196 R 351746 CDS YP_001266676.1 148546574 5194333 1497919..1498176 1 NC_009512.1 hypothetical protein 1498176 5194333 Pput_1332 Pseudomonas putida F1 hypothetical protein YP_001266676.1 1497919 D 351746 CDS YP_001266677.1 148546575 5194898 1498366..1498791 1 NC_009512.1 hypothetical protein 1498791 5194898 Pput_1333 Pseudomonas putida F1 hypothetical protein YP_001266677.1 1498366 D 351746 CDS YP_001266678.1 148546576 5194899 1498836..1499180 1 NC_009512.1 PFAM: DGPFAETKE family protein; DGPFAETKE family protein 1499180 5194899 Pput_1334 Pseudomonas putida F1 DGPFAETKE family protein YP_001266678.1 1498836 D 351746 CDS YP_001266679.1 148546577 5191201 1499202..1499687 1 NC_009512.1 PFAM: Activator of Hsp90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 1499687 5191201 Pput_1335 Pseudomonas putida F1 activator of Hsp90 ATPase 1 family protein YP_001266679.1 1499202 D 351746 CDS YP_001266680.1 148546578 5191202 1499687..1500925 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; RNA polymerase ECF-subfamily sigma factor 1500925 5191202 Pput_1336 Pseudomonas putida F1 RNA polymerase ECF-subfamily sigma factor YP_001266680.1 1499687 D 351746 CDS YP_001266681.1 148546579 5191922 complement(1501044..1501514) 1 NC_009512.1 PFAM: MaoC domain protein dehydratase; dehydratase 1501514 5191922 Pput_1337 Pseudomonas putida F1 dehydratase YP_001266681.1 1501044 R 351746 CDS YP_001266682.1 148546580 5191923 complement(1501549..1502493) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1502493 5191923 Pput_1338 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001266682.1 1501549 R 351746 CDS YP_001266683.1 148546581 5193697 1502712..1504400 1 NC_009512.1 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 1504400 5193697 Pput_1339 Pseudomonas putida F1 long-chain-fatty-acid--CoA ligase YP_001266683.1 1502712 D 351746 CDS YP_001266684.1 148546582 5193698 1504720..1506417 1 NC_009512.1 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 1506417 5193698 Pput_1340 Pseudomonas putida F1 long-chain-fatty-acid--CoA ligase YP_001266684.1 1504720 D 351746 CDS YP_001266685.1 148546583 5193645 complement(1506704..1508011) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1508011 5193645 Pput_1341 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001266685.1 1506704 R 351746 CDS YP_001266686.1 148546584 5193646 complement(1508036..1509415) 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 1509415 5193646 Pput_1342 Pseudomonas putida F1 glutamate--putrescine ligase YP_001266686.1 1508036 R 351746 CDS YP_001266687.1 148546585 5190696 complement(1509486..1509701) 1 NC_009512.1 hypothetical protein 1509701 5190696 Pput_1343 Pseudomonas putida F1 hypothetical protein YP_001266687.1 1509486 R 351746 CDS YP_001266688.1 148546586 5190697 1509971..1513876 1 NC_009512.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 1513876 5190697 Pput_1344 Pseudomonas putida F1 ATP-dependent helicase HrpA YP_001266688.1 1509971 D 351746 CDS YP_001266689.1 148546587 5191033 1514000..1515172 1 NC_009512.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1515172 5191033 Pput_1345 Pseudomonas putida F1 3-oxoacyl-ACP synthase YP_001266689.1 1514000 D 351746 CDS YP_001266690.1 148546588 5191034 complement(1515374..1516618) 1 NC_009512.1 hypothetical protein 1516618 5191034 Pput_1346 Pseudomonas putida F1 hypothetical protein YP_001266690.1 1515374 R 351746 CDS YP_001266691.1 148546589 5195416 1516824..1518008 1 NC_009512.1 PFAM: protein of unknown function DUF482; hypothetical protein 1518008 5195416 Pput_1347 Pseudomonas putida F1 hypothetical protein YP_001266691.1 1516824 D 351746 CDS YP_001266692.1 148546590 5195417 complement(1518113..1519945) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1519945 5195417 Pput_1348 Pseudomonas putida F1 ABC transporter-like protein YP_001266692.1 1518113 R 351746 CDS YP_001266693.1 148546591 5190856 complement(1520008..1520565) 1 NC_009512.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1520565 5190856 Pput_1349 Pseudomonas putida F1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001266693.1 1520008 R 351746 CDS YP_001266694.1 148546592 5190857 complement(1520559..1521371) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1521371 5190857 Pput_1350 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001266694.1 1520559 R 351746 CDS YP_001266695.1 148546593 5194692 complement(1521385..1522308) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1522308 5194692 Pput_1351 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266695.1 1521385 R 351746 CDS YP_001266696.1 148546594 5194693 1522357..1522671 1 NC_009512.1 hypothetical protein 1522671 5194693 Pput_1352 Pseudomonas putida F1 hypothetical protein YP_001266696.1 1522357 D 351746 CDS YP_001266697.1 148546595 5193665 1522768..1523382 1 NC_009512.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1523382 5193665 Pput_1353 Pseudomonas putida F1 NAD(P)H dehydrogenase (quinone) YP_001266697.1 1522768 D 351746 CDS YP_001266698.1 148546596 5193666 1523638..1524513 1 NC_009512.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6, transmembrane; carboxylate/amino acid/amine transporter 1524513 5193666 Pput_1354 Pseudomonas putida F1 carboxylate/amino acid/amine transporter YP_001266698.1 1523638 D 351746 CDS YP_001266699.1 148546597 5194645 1525853..1526836 1 NC_009512.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 1526836 5194645 Pput_1356 Pseudomonas putida F1 transposase, IS4 family protein YP_001266699.1 1525853 D 351746 CDS YP_001266700.1 148546598 5190700 1527555..1527914 1 NC_009512.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 1527914 5190700 Pput_1358 Pseudomonas putida F1 cupin YP_001266700.1 1527555 D 351746 CDS YP_001266701.1 148546599 5192875 complement(1528057..1528947) 1 NC_009512.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 1528947 5192875 Pput_1359 Pseudomonas putida F1 6-phosphogluconate dehydrogenase YP_001266701.1 1528057 R 351746 CDS YP_001266702.1 148546600 5192876 complement(1528950..1530041) 1 NC_009512.1 PFAM: protein of unknown function DUF453; hypothetical protein 1530041 5192876 Pput_1360 Pseudomonas putida F1 hypothetical protein YP_001266702.1 1528950 R 351746 CDS YP_001266703.1 148546601 5191630 complement(1530043..1530759) 1 NC_009512.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 1530759 5191630 Pput_1361 Pseudomonas putida F1 hypothetical protein YP_001266703.1 1530043 R 351746 CDS YP_001266704.1 148546602 5191631 complement(1530756..1531493) 1 NC_009512.1 PFAM: LmbE family protein; LmbE family protein 1531493 5191631 Pput_1362 Pseudomonas putida F1 LmbE family protein YP_001266704.1 1530756 R 351746 CDS YP_001266705.1 148546603 5191256 complement(1531521..1532747) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 1532747 5191256 Pput_1363 Pseudomonas putida F1 outer membrane porin YP_001266705.1 1531521 R 351746 CDS YP_001266706.1 148546604 5191257 complement(1532817..1534133) 1 NC_009512.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1534133 5191257 Pput_1364 Pseudomonas putida F1 sodium:dicarboxylate symporter YP_001266706.1 1532817 R 351746 CDS YP_001266707.1 148546605 5193677 complement(1534187..1535050) 1 NC_009512.1 PFAM: amidohydrolase 2; amidohydrolase 2 1535050 5193677 Pput_1365 Pseudomonas putida F1 amidohydrolase 2 YP_001266707.1 1534187 R 351746 CDS YP_001266708.1 148546606 5193678 complement(1535163..1536041) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1536041 5193678 Pput_1366 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266708.1 1535163 R 351746 CDS YP_001266709.1 148546607 5191080 complement(1536247..1536885) 1 NC_009512.1 PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 1536885 5191080 Pput_1367 Pseudomonas putida F1 hypothetical protein YP_001266709.1 1536247 R 351746 CDS YP_001266710.1 148546608 5191081 complement(1536913..1537887) 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1537887 5191081 Pput_1368 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001266710.1 1536913 R 351746 CDS YP_001266711.1 148546609 5190409 complement(1537898..1539238) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1539238 5190409 Pput_1369 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266711.1 1537898 R 351746 CDS YP_001266712.1 148546610 5190410 1539408..1540946 1 NC_009512.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; transcriptional regulator IclR-like protein 1540946 5190410 Pput_1370 Pseudomonas putida F1 transcriptional regulator IclR-like protein YP_001266712.1 1539408 D 351746 CDS YP_001266713.1 148546611 5193385 1541460..1542251 1 NC_009512.1 hypothetical protein 1542251 5193385 Pput_1371 Pseudomonas putida F1 hypothetical protein YP_001266713.1 1541460 D 351746 CDS YP_001266714.1 148546612 5193386 1542712..1543002 1 NC_009512.1 hypothetical protein 1543002 5193386 Pput_1372 Pseudomonas putida F1 hypothetical protein YP_001266714.1 1542712 D 351746 CDS YP_001266715.1 148546613 5194118 1543461..1543673 1 NC_009512.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1543673 5194118 Pput_1373 Pseudomonas putida F1 transposase IS3/IS911 family protein YP_001266715.1 1543461 D 351746 CDS YP_001266716.1 148546614 5194119 complement(1543706..1544902) 1 NC_009512.1 PFAM: transposase, mutator type; transposase, mutator type 1544902 5194119 Pput_1374 Pseudomonas putida F1 transposase, mutator type YP_001266716.1 1543706 R 351746 CDS YP_001266717.1 148546615 5190627 1545548..1545790 1 NC_009512.1 hypothetical protein 1545790 5190627 Pput_1375 Pseudomonas putida F1 hypothetical protein YP_001266717.1 1545548 D 351746 CDS YP_001266718.1 148546616 5190628 1545887..1546156 1 NC_009512.1 hypothetical protein 1546156 5190628 Pput_1376 Pseudomonas putida F1 hypothetical protein YP_001266718.1 1545887 D 351746 CDS YP_001266719.1 148546617 5194492 complement(1546509..1547810) 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1547810 5194492 Pput_1377 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001266719.1 1546509 R 351746 CDS YP_001266720.1 148546618 5194493 1547914..1549275 1 NC_009512.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1549275 5194493 Pput_1378 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001266720.1 1547914 D 351746 CDS YP_001266721.1 148546619 5191482 complement(1549347..1549619) 1 NC_009512.1 hypothetical protein 1549619 5191482 Pput_1379 Pseudomonas putida F1 hypothetical protein YP_001266721.1 1549347 R 351746 CDS YP_001266722.1 148546620 5191483 1549835..1550113 1 NC_009512.1 PFAM: protein of unknown function DUF497; hypothetical protein 1550113 5191483 Pput_1380 Pseudomonas putida F1 hypothetical protein YP_001266722.1 1549835 D 351746 CDS YP_001266723.1 148546621 5192966 1550091..1550345 1 NC_009512.1 hypothetical protein 1550345 5192966 Pput_1381 Pseudomonas putida F1 hypothetical protein YP_001266723.1 1550091 D 351746 CDS YP_001266724.1 148546622 5192967 1550422..1550817 1 NC_009512.1 hypothetical protein 1550817 5192967 Pput_1382 Pseudomonas putida F1 hypothetical protein YP_001266724.1 1550422 D 351746 CDS YP_001266725.1 148546623 5192856 1550923..1551849 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1551849 5192856 Pput_1383 Pseudomonas putida F1 hypothetical protein YP_001266725.1 1550923 D 351746 CDS YP_001266726.1 148546624 5192857 complement(1551949..1553121) 1 NC_009512.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; hypothetical protein 1553121 5192857 Pput_1384 Pseudomonas putida F1 hypothetical protein YP_001266726.1 1551949 R 351746 CDS YP_001266727.1 148546625 5191693 1553228..1554121 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1554121 5191693 Pput_1385 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266727.1 1553228 D 351746 CDS YP_001266728.1 148546626 5191694 1554246..1554374 1 NC_009512.1 hypothetical protein 1554374 5191694 Pput_1386 Pseudomonas putida F1 hypothetical protein YP_001266728.1 1554246 D 351746 CDS YP_001266729.1 148546627 5193966 complement(1554501..1555880) 1 NC_009512.1 PFAM: Na+/solute symporter; Na+/solute symporter 1555880 5193966 Pput_1387 Pseudomonas putida F1 Na+/solute symporter YP_001266729.1 1554501 R 351746 CDS YP_001266730.1 148546628 5193967 complement(1556013..1556975) 1 NC_009512.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; putative agmatinase 1556975 5193967 Pput_1388 Pseudomonas putida F1 putative agmatinase YP_001266730.1 1556013 R 351746 CDS YP_001266731.1 148546629 5190464 1557188..1558081 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1558081 5190464 Pput_1389 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266731.1 1557188 D 351746 CDS YP_001266732.1 148546630 5190465 1558180..1559784 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; methyl-accepting chemotaxis sensory transducer 1559784 5190465 Pput_1390 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001266732.1 1558180 D 351746 CDS YP_001266733.1 148546631 5195149 1559849..1560448 1 NC_009512.1 PFAM: DTW domain containing protein; DTW domain-containing protein 1560448 5195149 Pput_1391 Pseudomonas putida F1 DTW domain-containing protein YP_001266733.1 1559849 D 351746 CDS YP_001266734.1 148546632 5195150 complement(1560511..1561869) 1 NC_009512.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1561869 5195150 Pput_1392 Pseudomonas putida F1 TolC family type I secretion outer membrane protein YP_001266734.1 1560511 R 351746 CDS YP_001266735.1 148546633 5191254 complement(1562181..1562546) 1 NC_009512.1 PFAM: protein of unknown function DUF454; hypothetical protein 1562546 5191254 Pput_1393 Pseudomonas putida F1 hypothetical protein YP_001266735.1 1562181 R 351746 CDS YP_001266736.1 148546634 5191255 complement(1562554..1563141) 1 NC_009512.1 TIGRFAM: yecA family protein; yecA family protein 1563141 5191255 Pput_1394 Pseudomonas putida F1 yecA family protein YP_001266736.1 1562554 R 351746 CDS YP_001266737.1 148546635 5194188 1563385..1565532 1 NC_009512.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 1565532 5194188 Pput_1395 Pseudomonas putida F1 ATP-dependent DNA helicase RecQ YP_001266737.1 1563385 D 351746 CDS YP_001266738.1 148546636 5194189 1565684..1566121 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1566121 5194189 Pput_1396 Pseudomonas putida F1 MarR family transcriptional regulator YP_001266738.1 1565684 D 351746 CDS YP_001266739.1 148546637 5193902 complement(1566155..1568341) 1 NC_009512.1 PFAM: Patatin; surface antigen variable number repeat protein; patatin 1568341 5193902 Pput_1397 Pseudomonas putida F1 patatin YP_001266739.1 1566155 R 351746 CDS YP_001266740.1 148546638 5193903 1568409..1568690 1 NC_009512.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; hypothetical protein 1568690 5193903 Pput_1398 Pseudomonas putida F1 hypothetical protein YP_001266740.1 1568409 D 351746 CDS YP_001266741.1 148546639 5193582 complement(1568691..1569581) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1569581 5193582 Pput_1399 Pseudomonas putida F1 hypothetical protein YP_001266741.1 1568691 R 351746 CDS YP_001266742.1 148546640 5193583 complement(1569802..1570569) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1570569 5193583 Pput_1400 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266742.1 1569802 R 351746 CDS YP_001266743.1 148546641 5194245 1570697..1571494 1 NC_009512.1 PFAM: metallophosphoesterase; metallophosphoesterase 1571494 5194245 Pput_1401 Pseudomonas putida F1 metallophosphoesterase YP_001266743.1 1570697 D 351746 CDS YP_001266744.1 148546642 5194246 complement(1571533..1571844) 1 NC_009512.1 hypothetical protein 1571844 5194246 Pput_1402 Pseudomonas putida F1 hypothetical protein YP_001266744.1 1571533 R 351746 CDS YP_001266745.1 148546643 5195196 1571998..1573059 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1573059 5195196 Pput_1403 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266745.1 1571998 D 351746 CDS YP_001266746.1 148546644 5195197 complement(1573016..1574470) 1 NC_009512.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein 1574470 5195197 Pput_1404 Pseudomonas putida F1 TrkH family potassium uptake protein YP_001266746.1 1573016 R 351746 CDS YP_001266747.1 148546645 5194135 1574573..1575130 1 NC_009512.1 PFAM: nitroreductase; nitroreductase 1575130 5194135 Pput_1405 Pseudomonas putida F1 nitroreductase YP_001266747.1 1574573 D 351746 CDS YP_001266748.1 148546646 5194136 complement(1575261..1576601) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1576601 5194136 Pput_1406 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266748.1 1575261 R 351746 CDS YP_001266749.1 148546647 5195422 complement(1576660..1577076) 1 NC_009512.1 PFAM: protein of unknown function, Spy-related; hypothetical protein 1577076 5195422 Pput_1407 Pseudomonas putida F1 hypothetical protein YP_001266749.1 1576660 R 351746 CDS YP_001266750.1 148546648 5195423 complement(1577237..1577914) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1577914 5195423 Pput_1408 Pseudomonas putida F1 two component transcriptional regulator YP_001266750.1 1577237 R 351746 CDS YP_001266751.1 148546649 5195573 complement(1577927..1578202) 1 NC_009512.1 hypothetical protein 1578202 5195573 Pput_1409 Pseudomonas putida F1 hypothetical protein YP_001266751.1 1577927 R 351746 CDS YP_001266752.1 148546650 5195574 complement(1578247..1578546) 1 NC_009512.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1578546 5195574 Pput_1410 Pseudomonas putida F1 YciI-like protein YP_001266752.1 1578247 R 351746 CDS YP_001266753.1 148546651 5194420 complement(1578548..1579141) 1 NC_009512.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1579141 5194420 Pput_1411 Pseudomonas putida F1 intracellular septation protein A YP_001266753.1 1578548 R 351746 CDS YP_001266754.1 148546652 5194421 1579209..1580069 1 NC_009512.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; phosphotransferase domain-containing protein 1580069 5194421 Pput_1412 Pseudomonas putida F1 phosphotransferase domain-containing protein YP_001266754.1 1579209 D 351746 CDS YP_001266755.1 148546653 5195330 1580047..1580712 1 NC_009512.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; Sua5/YciO/YrdC/YwlC family protein 1580712 5195330 Pput_1413 Pseudomonas putida F1 Sua5/YciO/YrdC/YwlC family protein YP_001266755.1 1580047 D 351746 CDS YP_001266756.1 148546654 5195331 1580709..1581563 1 NC_009512.1 PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1581563 5195331 Pput_1414 Pseudomonas putida F1 chromosome segregation and condensation protein ScpA YP_001266756.1 1580709 D 351746 CDS YP_001266757.1 148546655 5190197 1581550..1582317 1 NC_009512.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; putative transcriptional regulator 1582317 5190197 Pput_1415 Pseudomonas putida F1 putative transcriptional regulator YP_001266757.1 1581550 D 351746 CDS YP_001266758.1 148546656 5190198 1582583..1583650 1 NC_009512.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RNA-binding S4 domain-containing protein 1583650 5190198 Pput_1416 Pseudomonas putida F1 RNA-binding S4 domain-containing protein YP_001266758.1 1582583 D 351746 CDS YP_001266759.1 148546657 5193053 1584288..1585706 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1585706 5193053 Pput_1417 Pseudomonas putida F1 amino acid permease-associated protein YP_001266759.1 1584288 D 351746 CDS YP_001266760.1 148546658 5193054 complement(1585845..1586729) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1586729 5193054 Pput_1418 Pseudomonas putida F1 LysR family transcriptional regulator YP_001266760.1 1585845 R 351746 CDS YP_001266761.1 148546659 5192439 1586882..1589902 1 NC_009512.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1589902 5192439 Pput_1419 Pseudomonas putida F1 FAD linked oxidase domain-containing protein YP_001266761.1 1586882 D 351746 CDS YP_001266762.1 148546660 5192440 complement(1590035..1591237) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1591237 5192440 Pput_1420 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266762.1 1590035 R 351746 CDS YP_001266763.1 148546661 5190441 complement(1591328..1595527) 1 NC_009512.1 hypothetical protein 1595527 5190441 Pput_1421 Pseudomonas putida F1 hypothetical protein YP_001266763.1 1591328 R 351746 CDS YP_001266764.1 148546662 5190442 complement(1595685..1595894) 1 NC_009512.1 hypothetical protein 1595894 5190442 Pput_1422 Pseudomonas putida F1 hypothetical protein YP_001266764.1 1595685 R 351746 CDS YP_001266765.1 148546663 5193480 complement(1596003..1596359) 1 NC_009512.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1596359 phhB 5193480 phhB Pseudomonas putida F1 pterin-4-alpha-carbinolamine dehydratase YP_001266765.1 1596003 R 351746 CDS YP_001266766.1 148546664 5193481 complement(1596399..1597187) 1 NC_009512.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1597187 phhA 5193481 phhA Pseudomonas putida F1 phenylalanine 4-monooxygenase YP_001266766.1 1596399 R 351746 CDS YP_001266767.1 148546665 5194377 1597445..1599004 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; transcriptional regulator TyrR 1599004 5194377 Pput_1425 Pseudomonas putida F1 transcriptional regulator TyrR YP_001266767.1 1597445 D 351746 CDS YP_001266768.1 148546666 5194378 complement(1599255..1600205) 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 1600205 5194378 Pput_1426 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001266768.1 1599255 R 351746 CDS YP_001266769.1 148546667 5192310 complement(1600468..1600722) 1 NC_009512.1 hypothetical protein 1600722 5192310 Pput_1427 Pseudomonas putida F1 hypothetical protein YP_001266769.1 1600468 R 351746 CDS YP_001266770.2 229328219 5192311 1601120..1603081 1 NC_009512.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1603081 acsA 5192311 acsA Pseudomonas putida F1 acetyl-CoA synthetase YP_001266770.2 1601120 D 351746 CDS YP_001266771.1 148546669 5192546 1603618..1604403 1 NC_009512.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; cationic amino acid ABC transporter periplasmic binding protein 1604403 5192546 Pput_1429 Pseudomonas putida F1 cationic amino acid ABC transporter periplasmic binding protein YP_001266771.1 1603618 D 351746 CDS YP_001266772.1 148546670 5192547 1604492..1605181 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1605181 5192547 Pput_1430 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001266772.1 1604492 D 351746 CDS YP_001266773.1 148546671 5193020 1605178..1605876 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1605876 5193020 Pput_1431 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001266773.1 1605178 D 351746 CDS YP_001266774.1 148546672 5193021 1605899..1606663 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1606663 5193021 Pput_1432 Pseudomonas putida F1 ABC transporter-like protein YP_001266774.1 1605899 D 351746 CDS YP_001266775.1 148546673 5192082 1606762..1607742 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1607742 5192082 Pput_1433 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266775.1 1606762 D 351746 CDS YP_001266776.1 148546674 5192083 1608115..1609335 1 NC_009512.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1609335 argD 5192083 argD Pseudomonas putida F1 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001266776.1 1608115 D 351746 CDS YP_001266777.1 148546675 5191210 1609483..1610502 1 NC_009512.1 PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 1610502 5191210 Pput_1435 Pseudomonas putida F1 arginine N-succinyltransferase YP_001266777.1 1609483 D 351746 CDS YP_001266778.1 148546676 5191211 1610581..1611609 1 NC_009512.1 PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 1611609 5191211 Pput_1436 Pseudomonas putida F1 arginine N-succinyltransferase YP_001266778.1 1610581 D 351746 CDS YP_001266779.1 148546677 5194775 1611610..1613073 1 NC_009512.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1613073 astD 5194775 astD Pseudomonas putida F1 succinylglutamic semialdehyde dehydrogenase YP_001266779.1 1611610 D 351746 CDS YP_001266780.1 148546678 5194776 1613097..1614446 1 NC_009512.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1614446 5194776 Pput_1438 Pseudomonas putida F1 succinylarginine dihydrolase YP_001266780.1 1613097 D 351746 CDS YP_001266781.1 148546679 5194247 1614461..1614751 1 NC_009512.1 hypothetical protein 1614751 5194247 Pput_1439 Pseudomonas putida F1 hypothetical protein YP_001266781.1 1614461 D 351746 CDS YP_001266782.1 148546680 5194248 1614762..1615769 1 NC_009512.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1615769 5194248 Pput_1440 Pseudomonas putida F1 succinylglutamate desuccinylase YP_001266782.1 1614762 D 351746 CDS YP_001266783.1 148546681 5194817 1616085..1618778 1 NC_009512.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1618778 alaS 5194817 alaS Pseudomonas putida F1 alanyl-tRNA synthetase YP_001266783.1 1616085 D 351746 CDS YP_001266784.1 148546682 5194818 1618881..1620116 1 NC_009512.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1620116 5194818 Pput_1442 Pseudomonas putida F1 aspartate kinase YP_001266784.1 1618881 D 351746 CDS YP_001266785.1 148546683 5195301 1620283..1620471 1 NC_009512.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1620471 5195301 Pput_1443 Pseudomonas putida F1 carbon storage regulator YP_001266785.1 1620283 D 351746 CDS YP_001266786.1 148546684 5191665 1621664..1623106 1 NC_009512.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; magnesium transporter 1623106 5191665 Pput_1444 Pseudomonas putida F1 magnesium transporter YP_001266786.1 1621664 D 351746 CDS YP_001266787.1 148546685 5191502 complement(1623213..1623530) 1 NC_009512.1 PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein 1623530 5191502 Pput_1445 Pseudomonas putida F1 Arc domain-containing protein YP_001266787.1 1623213 R 351746 CDS YP_001266788.1 148546686 5191503 1623884..1624477 1 NC_009512.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 1624477 5191503 Pput_1446 Pseudomonas putida F1 phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_001266788.1 1623884 D 351746 CDS YP_001266789.1 148546687 5191892 complement(1624748..1626130) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 1626130 5191892 Pput_1447 Pseudomonas putida F1 amino acid permease-associated protein YP_001266789.1 1624748 R 351746 CDS YP_001266790.1 148546688 5190753 complement(1626435..1626962) 1 NC_009512.1 hypothetical protein 1626962 5190753 Pput_1448 Pseudomonas putida F1 hypothetical protein YP_001266790.1 1626435 R 351746 CDS YP_001266791.1 148546689 5191839 1627178..1628176 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1628176 5191839 Pput_1449 Pseudomonas putida F1 PAS/PAC sensor-containing diguanylate cyclase YP_001266791.1 1627178 D 351746 CDS YP_001266792.1 148546690 5191840 complement(1628387..1629766) 1 NC_009512.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1629766 5191840 Pput_1450 Pseudomonas putida F1 dihydrolipoamide dehydrogenase YP_001266792.1 1628387 R 351746 CDS YP_001266793.1 148546691 5192524 complement(1629769..1631040) 1 NC_009512.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 1631040 5192524 Pput_1451 Pseudomonas putida F1 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001266793.1 1629769 R 351746 CDS YP_001266794.1 148546692 5192525 complement(1631041..1632099) 1 NC_009512.1 PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 1632099 5192525 Pput_1452 Pseudomonas putida F1 transketolase, central region YP_001266794.1 1631041 R 351746 CDS YP_001266795.1 148546693 5191622 complement(1632101..1633333) 1 NC_009512.1 PFAM: dehydrogenase, E1 component; 3-methyl-2-oxobutanoate dehydrogenase 1633333 5191622 Pput_1453 Pseudomonas putida F1 3-methyl-2-oxobutanoate dehydrogenase YP_001266795.1 1632101 R 351746 CDS YP_001266796.1 148546694 5191623 1633532..1634017 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 1634017 5191623 Pput_1454 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001266796.1 1633532 D 351746 CDS YP_001266797.1 148546695 5195449 1634192..1635514 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 1635514 5195449 Pput_1455 Pseudomonas putida F1 glutamate--putrescine ligase YP_001266797.1 1634192 D 351746 CDS YP_001266798.1 148546696 5195450 1635647..1636987 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1636987 5195450 Pput_1456 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266798.1 1635647 D 351746 CDS YP_001266799.1 148546697 5195198 complement(1637081..1637824) 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1637824 5195198 Pput_1457 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001266799.1 1637081 R 351746 CDS YP_001266800.1 148546698 5195199 complement(1637904..1638371) 1 NC_009512.1 PFAM: FlgN family protein; FlgN family protein 1638371 5195199 Pput_1458 Pseudomonas putida F1 FlgN family protein YP_001266800.1 1637904 R 351746 CDS YP_001266801.1 148546699 5194518 complement(1638421..1638735) 1 NC_009512.1 PFAM: Anti-sigma-28 factor, FlgM family protein; anti-sigma-28 factor FlgM 1638735 5194518 Pput_1459 Pseudomonas putida F1 anti-sigma-28 factor FlgM YP_001266801.1 1638421 R 351746 CDS YP_001266802.1 148546700 5194519 complement(1638900..1639652) 1 NC_009512.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1639652 flgA 5194519 flgA Pseudomonas putida F1 flagellar basal body P-ring biosynthesis protein FlgA YP_001266802.1 1638900 R 351746 CDS YP_001266803.1 148546701 5192635 1639730..1640659 1 NC_009512.1 PFAM: response regulator receiver; CheW domain protein; putative CheW protein 1640659 5192635 Pput_1461 Pseudomonas putida F1 putative CheW protein YP_001266803.1 1639730 D 351746 CDS YP_001266804.1 148546702 5192636 1640712..1641539 1 NC_009512.1 PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 1641539 5192636 Pput_1462 Pseudomonas putida F1 protein-glutamate O-methyltransferase YP_001266804.1 1640712 D 351746 CDS YP_001266805.1 148546703 5192598 1642012..1642422 1 NC_009512.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1642422 flgB 5192598 flgB Pseudomonas putida F1 flagellar basal body rod protein FlgB YP_001266805.1 1642012 D 351746 CDS YP_001266806.1 148546704 5194088 1642425..1642868 1 NC_009512.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1642868 flgC 5194088 flgC Pseudomonas putida F1 flagellar basal body rod protein FlgC YP_001266806.1 1642425 D 351746 CDS YP_001266807.1 148546705 5192511 1642884..1643588 1 NC_009512.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1643588 flgD 5192511 flgD Pseudomonas putida F1 flagellar basal body rod modification protein YP_001266807.1 1642884 D 351746 CDS YP_001266808.1 148546706 5192512 1643620..1645374 1 NC_009512.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body FlaE domain-containing protein 1645374 5192512 Pput_1467 Pseudomonas putida F1 flagellar basal body FlaE domain-containing protein YP_001266808.1 1643620 D 351746 CDS YP_001266809.1 148546707 5191031 1645447..1645635 1 NC_009512.1 hypothetical protein 1645635 5191031 Pput_1468 Pseudomonas putida F1 hypothetical protein YP_001266809.1 1645447 D 351746 CDS YP_001266810.1 148546708 5191032 1645841..1646581 1 NC_009512.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1646581 flgF 5191032 flgF Pseudomonas putida F1 flagellar basal body rod protein FlgF YP_001266810.1 1645841 D 351746 CDS YP_001266811.1 148546709 5194974 1646630..1647415 1 NC_009512.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1647415 flgG 5194974 flgG Pseudomonas putida F1 flagellar basal body rod protein FlgG YP_001266811.1 1646630 D 351746 CDS YP_001266812.1 148546710 5194975 1647452..1648147 1 NC_009512.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1648147 flgH 5194975 flgH Pseudomonas putida F1 flagellar basal body L-ring protein YP_001266812.1 1647452 D 351746 CDS YP_001266813.1 148546711 5191716 1648160..1649269 1 NC_009512.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1649269 flgI 5191716 flgI Pseudomonas putida F1 flagellar basal body P-ring protein YP_001266813.1 1648160 D 351746 CDS YP_001266814.1 148546712 5191717 1649281..1650435 1 NC_009512.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1650435 flgJ 5191717 flgJ Pseudomonas putida F1 flagellar rod assembly protein/muramidase FlgJ YP_001266814.1 1649281 D 351746 CDS YP_001266815.1 148546713 5191492 1650448..1652478 1 NC_009512.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1652478 flgK 5191492 flgK Pseudomonas putida F1 flagellar hook-associated protein FlgK YP_001266815.1 1650448 D 351746 CDS YP_001266816.1 148546714 5191493 1652492..1654057 1 NC_009512.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 1654057 flgL 5191493 flgL Pseudomonas putida F1 flagellar hook-associated protein FlgL YP_001266816.1 1652492 D 351746 CDS YP_001266817.1 148546715 5195505 1654185..1657763 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1657763 5195505 Pput_1476 Pseudomonas putida F1 glycosyl transferase family protein YP_001266817.1 1654185 D 351746 CDS YP_001266818.1 148546716 5195506 1657816..1660533 1 NC_009512.1 hypothetical protein 1660533 5195506 Pput_1477 Pseudomonas putida F1 hypothetical protein YP_001266818.1 1657816 D 351746 CDS YP_001266819.1 148546717 5194177 1660548..1660784 1 NC_009512.1 hypothetical protein 1660784 5194177 Pput_1478 Pseudomonas putida F1 hypothetical protein YP_001266819.1 1660548 D 351746 CDS YP_001266820.1 148546718 5194178 1660781..1661551 1 NC_009512.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 1661551 5194178 Pput_1479 Pseudomonas putida F1 glucose-1-phosphate cytidylyltransferase YP_001266820.1 1660781 D 351746 CDS YP_001266821.1 148546719 5191970 1661548..1662609 1 NC_009512.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; CDP-glucose 4,6-dehydratase 1662609 5191970 Pput_1480 Pseudomonas putida F1 CDP-glucose 4,6-dehydratase YP_001266821.1 1661548 D 351746 CDS YP_001266822.1 148546720 5191971 1662602..1663924 1 NC_009512.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase 1663924 5191971 Pput_1481 Pseudomonas putida F1 DegT/DnrJ/EryC1/StrS aminotransferase YP_001266822.1 1662602 D 351746 CDS YP_001266823.1 148546721 5192196 1664016..1667504 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1667504 5192196 Pput_1482 Pseudomonas putida F1 glycosyl transferase family protein YP_001266823.1 1664016 D 351746 CDS YP_001266824.1 148546722 5192197 1667659..1668768 1 NC_009512.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; N-acetylneuraminic acid synthase domain-containing protein 1668768 5192197 Pput_1483 Pseudomonas putida F1 N-acetylneuraminic acid synthase domain-containing protein YP_001266824.1 1667659 D 351746 CDS YP_001266825.1 148546723 5194348 1668768..1670600 1 NC_009512.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate binding domain-containing protein 1670600 5194348 Pput_1484 Pseudomonas putida F1 thiamine pyrophosphate binding domain-containing protein YP_001266825.1 1668768 D 351746 CDS YP_001266826.1 148546724 5194349 1670600..1671730 1 NC_009512.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1671730 5194349 Pput_1485 Pseudomonas putida F1 FkbM family methyltransferase YP_001266826.1 1670600 D 351746 CDS YP_001266827.1 148546725 5191735 1671730..1672683 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1672683 5191735 Pput_1486 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001266827.1 1671730 D 351746 CDS YP_001266828.1 148546726 5191736 1672754..1673656 1 NC_009512.1 hypothetical protein 1673656 5191736 Pput_1487 Pseudomonas putida F1 hypothetical protein YP_001266828.1 1672754 D 351746 CDS YP_001266829.1 148546727 5192964 1673871..1674806 1 NC_009512.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; beta-ketoacyl-acyl-carrier-protein synthase I 1674806 5192964 Pput_1488 Pseudomonas putida F1 beta-ketoacyl-acyl-carrier-protein synthase I YP_001266829.1 1673871 D 351746 CDS YP_001266830.1 148546728 5192965 1675059..1675910 1 NC_009512.1 structural flagella protein; flagellin 1675910 5192965 Pput_1489 Pseudomonas putida F1 flagellin YP_001266830.1 1675059 D 351746 CDS YP_001266831.1 148546729 5191248 1675982..1676359 1 NC_009512.1 PFAM: flagellar protein FlaG protein; flagellar protein FlaG protein 1676359 5191248 Pput_1490 Pseudomonas putida F1 flagellar protein FlaG protein YP_001266831.1 1675982 D 351746 CDS YP_001266832.1 148546730 5191249 1676441..1677853 1 NC_009512.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated 2 domain-containing protein 1677853 5191249 Pput_1491 Pseudomonas putida F1 flagellar hook-associated 2 domain-containing protein YP_001266832.1 1676441 D 351746 CDS YP_001266833.1 148546731 5190288 1677992..1678387 1 NC_009512.1 flagellin specific chaperone; flagellar protein FliS 1678387 fliS 5190288 fliS Pseudomonas putida F1 flagellar protein FliS YP_001266833.1 1677992 D 351746 CDS YP_001266834.1 148546732 5190289 1678402..1678698 1 NC_009512.1 hypothetical protein 1678698 5190289 Pput_1493 Pseudomonas putida F1 hypothetical protein YP_001266834.1 1678402 D 351746 CDS YP_001266835.1 148546733 5193461 1678868..1680343 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 1680343 5193461 Pput_1494 Pseudomonas putida F1 sigma-54 dependent trancsriptional regulator YP_001266835.1 1678868 D 351746 CDS YP_001266836.1 148546734 5193462 1680484..1681701 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1681701 5193462 Pput_1495 Pseudomonas putida F1 PAS/PAC sensor signal transduction histidine kinase YP_001266836.1 1680484 D 351746 CDS YP_001266837.1 148546735 5191714 1681701..1683056 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 1683056 5191714 Pput_1496 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001266837.1 1681701 D 351746 CDS YP_001266838.1 148546736 5191715 1683251..1683583 1 NC_009512.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1683583 fliE 5191715 fliE Pseudomonas putida F1 flagellar hook-basal body protein FliE YP_001266838.1 1683251 D 351746 CDS YP_001266839.1 148546737 5190445 1683599..1685377 1 NC_009512.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1685377 fliF 5190445 fliF Pseudomonas putida F1 flagellar MS-ring protein YP_001266839.1 1683599 D 351746 CDS YP_001266840.1 148546738 5190446 1685370..1686389 1 NC_009512.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1686389 fliG 5190446 fliG Pseudomonas putida F1 flagellar motor switch protein G YP_001266840.1 1685370 D 351746 CDS YP_001266841.1 148546739 5190367 1686552..1687346 1 NC_009512.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1687346 fliH 5190367 fliH Pseudomonas putida F1 flagellar assembly protein H YP_001266841.1 1686552 D 351746 CDS YP_001266842.1 148546740 5190368 1687336..1688691 1 NC_009512.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1688691 fliI 5190368 fliI Pseudomonas putida F1 flagellum-specific ATP synthase YP_001266842.1 1687336 D 351746 CDS YP_001266843.1 148546741 5195151 1688698..1689150 1 NC_009512.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 1689150 fliJ 5195151 fliJ Pseudomonas putida F1 flagellar biosynthesis chaperone YP_001266843.1 1688698 D 351746 CDS YP_001266844.1 148546742 5195152 1689458..1689763 1 NC_009512.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 1689763 5195152 Pput_1503 Pseudomonas putida F1 anti-sigma-factor antagonist YP_001266844.1 1689458 D 351746 CDS YP_001266845.1 148546743 5192623 1689772..1691463 1 NC_009512.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein 1691463 5192623 Pput_1504 Pseudomonas putida F1 response regulator receiver protein YP_001266845.1 1689772 D 351746 CDS YP_001266846.1 148546744 5192624 1691521..1691859 1 NC_009512.1 PFAM: Hpt domain protein; Hpt protein 1691859 5192624 Pput_1505 Pseudomonas putida F1 Hpt protein YP_001266846.1 1691521 D 351746 CDS YP_001266847.1 148546745 5193827 1691930..1693195 1 NC_009512.1 PFAM: flagellar hook-length control protein; flagellar hook-length control protein 1693195 5193827 Pput_1506 Pseudomonas putida F1 flagellar hook-length control protein YP_001266847.1 1691930 D 351746 CDS YP_001266848.1 148546746 5193828 1693415..1693912 1 NC_009512.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1693912 fliL 5193828 fliL Pseudomonas putida F1 flagellar basal body-associated protein FliL YP_001266848.1 1693415 D 351746 CDS YP_001266849.1 148546747 5192782 1693922..1694890 1 NC_009512.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1694890 fliM 5192782 fliM Pseudomonas putida F1 flagellar motor switch protein FliM YP_001266849.1 1693922 D 351746 CDS YP_001266850.1 148546748 5192783 1694938..1695402 1 NC_009512.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1695402 fliN 5192783 fliN Pseudomonas putida F1 flagellar motor switch protein YP_001266850.1 1694938 D 351746 CDS YP_001266851.1 148546749 5193348 1695415..1695849 1 NC_009512.1 PFAM: flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1695849 5193348 Pput_1510 Pseudomonas putida F1 flagellar biosynthesis protein, FliO YP_001266851.1 1695415 D 351746 CDS YP_001266852.1 148546750 5193349 1695849..1696604 1 NC_009512.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1696604 fliP 5193349 fliP Pseudomonas putida F1 flagellar biosynthesis protein FliP YP_001266852.1 1695849 D 351746 CDS YP_001266853.1 148546751 5190782 1696626..1696895 1 NC_009512.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1696895 fliQ 5190782 fliQ Pseudomonas putida F1 flagellar biosynthesis protein FliQ YP_001266853.1 1696626 D 351746 CDS YP_001266854.1 148546752 5190783 1696903..1697679 1 NC_009512.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1697679 fliR 5190783 fliR Pseudomonas putida F1 flagellar biosynthesis protein FliR YP_001266854.1 1696903 D 351746 CDS YP_001266855.1 148546753 5191663 1697682..1698824 1 NC_009512.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1698824 flhB 5191663 flhB Pseudomonas putida F1 flagellar biosynthesis protein FlhB YP_001266855.1 1697682 D 351746 CDS YP_001266856.1 148546754 5191664 1699049..1699312 1 NC_009512.1 flagellar biosynthesis pathway component FlhA-like protein 1699312 5191664 Pput_1515 Pseudomonas putida F1 flagellar biosynthesis pathway component FlhA-like protein YP_001266856.1 1699049 D 351746 CDS YP_001266857.1 148546755 5190517 complement(1699466..1700380) 1 NC_009512.1 PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 1700380 5190517 Pput_1516 Pseudomonas putida F1 D-alanine--D-alanine ligase YP_001266857.1 1699466 R 351746 CDS YP_001266858.1 148546756 5190518 complement(1700377..1701540) 1 NC_009512.1 PFAM: aminotransferase, class V; class V aminotransferase 1701540 5190518 Pput_1517 Pseudomonas putida F1 class V aminotransferase YP_001266858.1 1700377 R 351746 CDS YP_001266859.1 148546757 5193916 complement(1701551..1702429) 1 NC_009512.1 hypothetical protein 1702429 5193916 Pput_1518 Pseudomonas putida F1 hypothetical protein YP_001266859.1 1701551 R 351746 CDS YP_001266860.1 148546758 5193917 complement(1702463..1703656) 1 NC_009512.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; Cys/Met metabolism pyridoxal-phosphate-dependent enzyme 1703656 5193917 Pput_1519 Pseudomonas putida F1 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme YP_001266860.1 1702463 R 351746 CDS YP_001266861.1 148546759 5195276 complement(1703631..1705259) 1 NC_009512.1 hypothetical protein 1705259 5195276 Pput_1520 Pseudomonas putida F1 hypothetical protein YP_001266861.1 1703631 R 351746 CDS YP_001266862.1 148546760 5195277 1705353..1706411 1 NC_009512.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 1706411 5195277 Pput_1521 Pseudomonas putida F1 D-alanine--D-alanine ligase YP_001266862.1 1705353 D 351746 CDS YP_001266863.1 148546761 5194316 complement(1706406..1707209) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1707209 5194316 Pput_1522 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266863.1 1706406 R 351746 CDS YP_001266864.1 148546762 5194317 1707400..1709646 1 NC_009512.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1709646 flhA 5194317 flhA Pseudomonas putida F1 flagellar biosynthesis protein FlhA YP_001266864.1 1707400 D 351746 CDS YP_001266865.1 148546763 5191440 1709658..1710965 1 NC_009512.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1710965 flhF 5191440 flhF Pseudomonas putida F1 flagellar biosynthesis regulator FlhF YP_001266865.1 1709658 D 351746 CDS YP_001266866.1 148546764 5191441 1711059..1711892 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1711892 5191441 Pput_1525 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001266866.1 1711059 D 351746 CDS YP_001266867.1 148546765 5192080 1711889..1712629 1 NC_009512.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1712629 fliA 5192080 fliA Pseudomonas putida F1 flagellar biosynthesis sigma factor YP_001266867.1 1711889 D 351746 CDS YP_001266868.1 148546766 5192081 1712725..1713111 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 1713111 5192081 Pput_1527 Pseudomonas putida F1 response regulator receiver protein YP_001266868.1 1712725 D 351746 CDS YP_001266869.1 148546767 5191078 1713133..1713921 1 NC_009512.1 PFAM: Chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ 1713921 5191078 Pput_1528 Pseudomonas putida F1 chemotaxis phosphatase CheZ YP_001266869.1 1713133 D 351746 CDS YP_001266870.1 148546768 5191079 1713934..1716177 1 NC_009512.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 1716177 5191079 Pput_1529 Pseudomonas putida F1 CheA signal transduction histidine kinase YP_001266870.1 1713934 D 351746 CDS YP_001266871.1 148546769 5192590 1716224..1717336 1 NC_009512.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1717336 5192590 Pput_1530 Pseudomonas putida F1 chemotaxis-specific methylesterase YP_001266871.1 1716224 D 351746 CDS YP_001266872.1 148546770 5192591 1717336..1718076 1 NC_009512.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 1718076 motC 5192591 motC Pseudomonas putida F1 flagellar motor protein YP_001266872.1 1717336 D 351746 CDS YP_001266873.1 148546771 5195519 1718080..1718937 1 NC_009512.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 1718937 5195519 Pput_1532 Pseudomonas putida F1 flagellar motor protein MotD YP_001266873.1 1718080 D 351746 CDS YP_001266874.1 148546772 5195520 1719161..1719949 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1719949 5195520 Pput_1533 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001266874.1 1719161 D 351746 CDS YP_001266875.1 148546773 5190217 1719949..1720845 1 NC_009512.1 PFAM: CheW domain protein; putative CheW protein 1720845 5190217 Pput_1534 Pseudomonas putida F1 putative CheW protein YP_001266875.1 1719949 D 351746 CDS YP_001266876.1 148546774 5190218 1720887..1721366 1 NC_009512.1 PFAM: CheW domain protein; putative CheW protein 1721366 5190218 Pput_1535 Pseudomonas putida F1 putative CheW protein YP_001266876.1 1720887 D 351746 CDS YP_001266877.1 148546775 5193560 1721368..1721763 1 NC_009512.1 hypothetical protein 1721763 5193560 Pput_1536 Pseudomonas putida F1 hypothetical protein YP_001266877.1 1721368 D 351746 CDS YP_001266878.1 148546776 5193561 complement(1721871..1724582) 1 NC_009512.1 hypothetical protein 1724582 5193561 Pput_1537 Pseudomonas putida F1 hypothetical protein YP_001266878.1 1721871 R 351746 CDS YP_001266879.1 148546777 5191314 complement(1724650..1724988) 1 NC_009512.1 flagellar protein FhlB-like protein 1724988 5191314 Pput_1538 Pseudomonas putida F1 flagellar protein FhlB-like protein YP_001266879.1 1724650 R 351746 CDS YP_001266880.1 148546778 5191315 complement(1724985..1726541) 1 NC_009512.1 hypothetical protein 1726541 5191315 Pput_1539 Pseudomonas putida F1 hypothetical protein YP_001266880.1 1724985 R 351746 CDS YP_001266881.1 148546779 5193858 1726780..1727412 1 NC_009512.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1727412 5193858 Pput_1540 Pseudomonas putida F1 cytochrome c biogenesis protein CcmA YP_001266881.1 1726780 D 351746 CDS YP_001266882.1 148546780 5193859 1727409..1728077 1 NC_009512.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 1728077 5193859 Pput_1541 Pseudomonas putida F1 heme exporter protein CcmB YP_001266882.1 1727409 D 351746 CDS YP_001266883.1 148546781 5195161 1728124..1728891 1 NC_009512.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 1728891 5195161 Pput_1542 Pseudomonas putida F1 heme exporter protein CcmC YP_001266883.1 1728124 D 351746 CDS YP_001266884.1 148546782 5195162 1728888..1729064 1 NC_009512.1 PFAM: Heme exporter protein D (CcmD); Heme exporter protein CcmD 1729064 5195162 Pput_1543 Pseudomonas putida F1 Heme exporter protein CcmD YP_001266884.1 1728888 D 351746 CDS YP_001266885.1 148546783 5192094 1729061..1729516 1 NC_009512.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1729516 5192094 Pput_1544 Pseudomonas putida F1 cytochrome c-type biogenesis protein CcmE YP_001266885.1 1729061 D 351746 CDS YP_001266886.1 148546784 5192095 1729513..1731501 1 NC_009512.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 1731501 5192095 Pput_1545 Pseudomonas putida F1 cytochrome c-type biogenesis protein CcmF YP_001266886.1 1729513 D 351746 CDS YP_001266887.1 148546785 5194951 1731498..1732034 1 NC_009512.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; periplasmic protein thiol--disulfide oxidoreductase DsbE 1732034 5194951 Pput_1546 Pseudomonas putida F1 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001266887.1 1731498 D 351746 CDS YP_001266888.1 148546786 5194952 1732031..1732507 1 NC_009512.1 PFAM: cytochrome C biogenesis protein; cytochrome C biogenesis protein 1732507 5194952 Pput_1547 Pseudomonas putida F1 cytochrome C biogenesis protein YP_001266888.1 1732031 D 351746 CDS YP_001266889.1 148546787 5191393 1732500..1733696 1 NC_009512.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1733696 5191393 Pput_1548 Pseudomonas putida F1 hypothetical protein YP_001266889.1 1732500 D 351746 CDS YP_001266890.1 148546788 5191394 1733709..1734125 1 NC_009512.1 hypothetical protein 1734125 5191394 Pput_1549 Pseudomonas putida F1 hypothetical protein YP_001266890.1 1733709 D 351746 CDS YP_001266891.1 148546789 5192465 1734742..1734927 1 NC_009512.1 hypothetical protein 1734927 5192465 Pput_1550 Pseudomonas putida F1 hypothetical protein YP_001266891.1 1734742 D 351746 CDS YP_001266892.1 148546790 5192466 1734956..1735894 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1735894 5192466 Pput_1551 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001266892.1 1734956 D 351746 CDS YP_001266893.1 148546791 5190720 1735946..1736734 1 NC_009512.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 1736734 5190720 Pput_1552 Pseudomonas putida F1 PhzF family phenazine biosynthesis protein YP_001266893.1 1735946 D 351746 CDS YP_001266894.1 148546792 5190721 1736802..1737209 1 NC_009512.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1737209 5190721 Pput_1553 Pseudomonas putida F1 glutathione-dependent formaldehyde-activating protein YP_001266894.1 1736802 D 351746 CDS YP_001266895.1 148546793 5190530 1737244..1737675 1 NC_009512.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1737675 5190530 Pput_1554 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001266895.1 1737244 D 351746 CDS YP_001266896.1 148546794 5190531 1737910..1738572 1 NC_009512.1 hypothetical protein 1738572 5190531 Pput_1555 Pseudomonas putida F1 hypothetical protein YP_001266896.1 1737910 D 351746 CDS YP_001266897.1 148546795 5190947 1738617..1739810 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 1739810 5190947 Pput_1556 Pseudomonas putida F1 D-amino-acid dehydrogenase YP_001266897.1 1738617 D 351746 CDS YP_001266898.1 148546796 5190948 complement(1739929..1740657) 1 NC_009512.1 PFAM: Asp/Glu racemase; Asp/Glu racemase 1740657 5190948 Pput_1557 Pseudomonas putida F1 Asp/Glu racemase YP_001266898.1 1739929 R 351746 CDS YP_001266899.1 148546797 5190764 complement(1740674..1742206) 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1742206 5190764 Pput_1558 Pseudomonas putida F1 cytosine/purines uracil thiamine allantoin permease YP_001266899.1 1740674 R 351746 CDS YP_001266900.1 148546798 5190765 complement(1742703..1743140) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 1743140 5190765 Pput_1559 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001266900.1 1742703 R 351746 CDS YP_001266901.1 148546799 5191018 1743274..1744197 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1744197 5191018 Pput_1560 Pseudomonas putida F1 hypothetical protein YP_001266901.1 1743274 D 351746 CDS YP_001266902.1 148546800 5191019 1744199..1745155 1 NC_009512.1 hypothetical protein 1745155 5191019 Pput_1561 Pseudomonas putida F1 hypothetical protein YP_001266902.1 1744199 D 351746 CDS YP_001266903.1 148546801 5193623 1746447..1747958 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1747958 5193623 Pput_1563 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266903.1 1746447 D 351746 CDS YP_001266904.1 148546802 5192723 1748045..1748425 1 NC_009512.1 hypothetical protein 1748425 5192723 Pput_1564 Pseudomonas putida F1 hypothetical protein YP_001266904.1 1748045 D 351746 CDS YP_001266905.1 148546803 5193701 complement(1748541..1749539) 1 NC_009512.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein 1749539 5193701 Pput_1565 Pseudomonas putida F1 sulfate ABC transporter substrate-binding protein YP_001266905.1 1748541 R 351746 CDS YP_001266906.1 148546804 5193702 complement(1749749..1750570) 1 NC_009512.1 PFAM: Ion transport protein; Ion transport 2 domain protein; Ion transport protein 1750570 5193702 Pput_1566 Pseudomonas putida F1 Ion transport protein YP_001266906.1 1749749 R 351746 CDS YP_001266907.1 148546805 5191193 complement(1750616..1751488) 1 NC_009512.1 PFAM: Urea transporter; Urea transporter 1751488 5191193 Pput_1567 Pseudomonas putida F1 Urea transporter YP_001266907.1 1750616 R 351746 CDS YP_001266908.1 148546806 5191194 complement(1751694..1753109) 1 NC_009512.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1753109 5191194 Pput_1568 Pseudomonas putida F1 pyruvate kinase YP_001266908.1 1751694 R 351746 CDS YP_001266909.1 148546807 5194858 complement(1753106..1754380) 1 NC_009512.1 PFAM: MOFRL domain protein; hydroxypyruvate reductase 1754380 5194858 Pput_1569 Pseudomonas putida F1 hydroxypyruvate reductase YP_001266909.1 1753106 R 351746 CDS YP_001266910.1 148546808 5194859 complement(1754621..1755514) 1 NC_009512.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1755514 5194859 Pput_1570 Pseudomonas putida F1 2-hydroxy-3-oxopropionate reductase YP_001266910.1 1754621 R 351746 CDS YP_001266911.1 148546809 5195253 complement(1755667..1756449) 1 NC_009512.1 PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 1756449 5195253 Pput_1571 Pseudomonas putida F1 hydroxypyruvate isomerase YP_001266911.1 1755667 R 351746 CDS YP_001266912.1 148546810 5195254 complement(1756504..1758279) 1 NC_009512.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 1758279 5195254 Pput_1572 Pseudomonas putida F1 glyoxylate carboligase YP_001266912.1 1756504 R 351746 CDS YP_001266913.1 148546811 5194422 1758537..1758977 1 NC_009512.1 PFAM: protein of unknown function DUF336; hypothetical protein 1758977 5194422 Pput_1573 Pseudomonas putida F1 hypothetical protein YP_001266913.1 1758537 D 351746 CDS YP_001266914.1 148546812 5194423 complement(1759100..1759711) 1 NC_009512.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 1759711 5194423 Pput_1574 Pseudomonas putida F1 TetR family transcriptional regulator YP_001266914.1 1759100 R 351746 CDS YP_001266915.1 148546813 5195029 1759844..1760758 1 NC_009512.1 PFAM: protein of unknown function DUF808; hypothetical protein 1760758 5195029 Pput_1575 Pseudomonas putida F1 hypothetical protein YP_001266915.1 1759844 D 351746 CDS YP_001266916.1 148546814 5195030 complement(1760898..1761680) 1 NC_009512.1 hypothetical protein 1761680 5195030 Pput_1576 Pseudomonas putida F1 hypothetical protein YP_001266916.1 1760898 R 351746 CDS YP_001266917.1 148546815 5193713 complement(1762033..1762818) 1 NC_009512.1 hypothetical protein 1762818 5193713 Pput_1577 Pseudomonas putida F1 hypothetical protein YP_001266917.1 1762033 R 351746 CDS YP_001266918.1 148546816 5193714 complement(1762959..1764314) 1 NC_009512.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 1764314 5193714 Pput_1578 Pseudomonas putida F1 uracil-xanthine permease YP_001266918.1 1762959 R 351746 CDS YP_001266919.1 148546817 5190320 complement(1764544..1765872) 1 NC_009512.1 PFAM: protein of unknown function DUF989; hypothetical protein 1765872 5190320 Pput_1579 Pseudomonas putida F1 hypothetical protein YP_001266919.1 1764544 R 351746 CDS YP_001266920.1 148546818 5190321 complement(1765917..1766420) 1 NC_009512.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 1766420 5190321 Pput_1580 Pseudomonas putida F1 ureidoglycolate hydrolase YP_001266920.1 1765917 R 351746 CDS YP_001266921.1 148546819 5192669 complement(1766470..1766985) 1 NC_009512.1 hypothetical protein 1766985 5192669 Pput_1581 Pseudomonas putida F1 hypothetical protein YP_001266921.1 1766470 R 351746 CDS YP_001266922.1 148546820 5192670 complement(1766985..1767911) 1 NC_009512.1 PFAM: polysaccharide deacetylase; chitin deacetylase 1767911 5192670 Pput_1582 Pseudomonas putida F1 chitin deacetylase YP_001266922.1 1766985 R 351746 CDS YP_001266923.1 148546821 5194403 1768311..1768664 1 NC_009512.1 TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin; hydroxyisourate hydrolase 1768664 5194403 Pput_1583 Pseudomonas putida F1 hydroxyisourate hydrolase YP_001266923.1 1768311 D 351746 CDS YP_001266924.1 148546822 5194404 complement(1768973..1770322) 1 NC_009512.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 1770322 5194404 Pput_1584 Pseudomonas putida F1 xanthine/uracil/vitamin C permease YP_001266924.1 1768973 R 351746 CDS YP_001266925.1 148546823 5194379 1770570..1771361 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1771361 5194379 Pput_1585 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266925.1 1770570 D 351746 CDS YP_001266926.1 148546824 5194380 1771511..1772209 1 NC_009512.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 1772209 5194380 Pput_1586 Pseudomonas putida F1 aquaporin Z YP_001266926.1 1771511 D 351746 CDS YP_001266927.1 148546825 5193584 complement(1772206..1773510) 1 NC_009512.1 Catalyzes the deamination of guanine; guanine deaminase 1773510 5193584 Pput_1587 Pseudomonas putida F1 guanine deaminase YP_001266927.1 1772206 R 351746 CDS YP_001266928.1 148546826 5193585 complement(1773521..1774366) 1 NC_009512.1 TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; xanthine dehydrogenase accessory protein XdhC 1774366 5193585 Pput_1588 Pseudomonas putida F1 xanthine dehydrogenase accessory protein XdhC YP_001266928.1 1773521 R 351746 CDS YP_001266929.1 148546827 5190611 complement(1774539..1776938) 1 NC_009512.1 TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase molybdopterin binding subunit 1776938 5190611 Pput_1589 Pseudomonas putida F1 xanthine dehydrogenase molybdopterin binding subunit YP_001266929.1 1774539 R 351746 CDS YP_001266930.1 148546828 5190612 complement(1776931..1778385) 1 NC_009512.1 TIGRFAM: Xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; xanthine dehydrogenase small subunit 1778385 5190612 Pput_1590 Pseudomonas putida F1 xanthine dehydrogenase small subunit YP_001266930.1 1776931 R 351746 CDS YP_001266931.1 148546829 5194027 1778654..1779313 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator 1779313 5194027 Pput_1591 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266931.1 1778654 D 351746 CDS YP_001266932.1 148546830 5194028 1779317..1782805 1 NC_009512.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; chromosome segregation protein SMC 1782805 5194028 Pput_1592 Pseudomonas putida F1 chromosome segregation protein SMC YP_001266932.1 1779317 D 351746 CDS YP_001266933.1 148546831 5193175 1783011..1783904 1 NC_009512.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 1783904 zipA 5193175 zipA Pseudomonas putida F1 cell division protein ZipA YP_001266933.1 1783011 D 351746 CDS YP_001266934.1 148546832 5193176 1784140..1786470 1 NC_009512.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1786470 ligA 5193176 ligA Pseudomonas putida F1 NAD-dependent DNA ligase LigA YP_001266934.1 1784140 D 351746 CDS YP_001266935.1 148546833 5193624 complement(1786821..1787240) 1 NC_009512.1 PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 1787240 5193624 Pput_1595 Pseudomonas putida F1 MerR family transcriptional regulator YP_001266935.1 1786821 R 351746 CDS YP_001266936.1 148546834 5193263 1787324..1787812 1 NC_009512.1 hypothetical protein 1787812 5193263 Pput_1596 Pseudomonas putida F1 hypothetical protein YP_001266936.1 1787324 D 351746 CDS YP_001266937.1 148546835 5193454 1788698..1788973 1 NC_009512.1 hypothetical protein 1788973 5193454 Pput_1597 Pseudomonas putida F1 hypothetical protein YP_001266937.1 1788698 D 351746 CDS YP_001266938.1 148546836 5193455 complement(1789183..1789989) 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1789989 5193455 Pput_1598 Pseudomonas putida F1 extracellular solute-binding protein YP_001266938.1 1789183 R 351746 CDS YP_001266939.1 148546837 5194226 1790111..1792189 1 NC_009512.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1792189 5194226 Pput_1599 Pseudomonas putida F1 DNA polymerase III subunits gamma and tau YP_001266939.1 1790111 D 351746 CDS YP_001266940.1 148546838 5194227 1792253..1792588 1 NC_009512.1 PFAM: conserved hypothetical protein 103; hypothetical protein 1792588 5194227 Pput_1600 Pseudomonas putida F1 hypothetical protein YP_001266940.1 1792253 D 351746 CDS YP_001266941.1 148546839 5191055 1792884..1793486 1 NC_009512.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1793486 recR 5191055 recR Pseudomonas putida F1 recombination protein RecR YP_001266941.1 1792884 D 351746 CDS YP_001266942.1 148546840 5191056 complement(1793605..1794153) 1 NC_009512.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1794153 5191056 Pput_1602 Pseudomonas putida F1 adenine phosphoribosyltransferase YP_001266942.1 1793605 R 351746 CDS YP_001266943.1 148546841 5193852 complement(1794209..1794943) 1 NC_009512.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 1794943 5193852 Pput_1603 Pseudomonas putida F1 CRP/FNR family transcriptional regulator YP_001266943.1 1794209 R 351746 CDS YP_001266944.1 148546842 5193853 complement(1795130..1796512) 1 NC_009512.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1796512 5193853 Pput_1604 Pseudomonas putida F1 coproporphyrinogen III oxidase YP_001266944.1 1795130 R 351746 CDS YP_001266945.1 148546843 5190340 complement(1796618..1797214) 1 NC_009512.1 hypothetical protein 1797214 5190340 Pput_1605 Pseudomonas putida F1 hypothetical protein YP_001266945.1 1796618 R 351746 CDS YP_001266946.1 148546844 5190341 complement(1797294..1797509) 1 NC_009512.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 1797509 5190341 Pput_1606 Pseudomonas putida F1 cbb3-type cytochrome oxidase maturation protein YP_001266946.1 1797294 R 351746 CDS YP_001266947.1 148546845 5192238 complement(1797488..1799962) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 1799962 5192238 Pput_1607 Pseudomonas putida F1 heavy metal translocating P-type ATPase YP_001266947.1 1797488 R 351746 CDS YP_001266948.1 148546846 5192239 complement(1800099..1800629) 1 NC_009512.1 hypothetical protein 1800629 5192239 Pput_1608 Pseudomonas putida F1 hypothetical protein YP_001266948.1 1800099 R 351746 CDS YP_001266949.1 148546847 5192217 complement(1800645..1802063) 1 NC_009512.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type, accessory protein FixG 1802063 5192217 Pput_1609 Pseudomonas putida F1 cytochrome c oxidase cbb3 type, accessory protein FixG YP_001266949.1 1800645 R 351746 CDS YP_001266950.1 148546848 5192218 complement(1802357..1803334) 1 NC_009512.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III 1803334 5192218 Pput_1610 Pseudomonas putida F1 cytochrome c oxidase, cbb3-type subunit III YP_001266950.1 1802357 R 351746 CDS YP_001266951.1 148546849 5192108 complement(1803331..1803522) 1 NC_009512.1 PFAM: Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 1803522 5192108 Pput_1611 Pseudomonas putida F1 cbb3-type cytochrome oxidase subunit YP_001266951.1 1803331 R 351746 CDS YP_001266952.1 148546850 5192109 complement(1803528..1804136) 1 NC_009512.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1804136 5192109 Pput_1612 Pseudomonas putida F1 cbb3-type cytochrome c oxidase subunit II YP_001266952.1 1803528 R 351746 CDS YP_001266953.1 148546851 5194320 complement(1804136..1805578) 1 NC_009512.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1805578 5194320 Pput_1613 Pseudomonas putida F1 cbb3-type cytochrome c oxidase subunit I YP_001266953.1 1804136 R 351746 CDS YP_001266954.1 148546852 5194321 complement(1805580..1805855) 1 NC_009512.1 hypothetical protein 1805855 5194321 Pput_1614 Pseudomonas putida F1 hypothetical protein YP_001266954.1 1805580 R 351746 CDS YP_001266955.1 148546853 5193522 complement(1806165..1807106) 1 NC_009512.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III 1807106 5193522 Pput_1615 Pseudomonas putida F1 cytochrome c oxidase, cbb3-type subunit III YP_001266955.1 1806165 R 351746 CDS YP_001266956.1 148546854 5193523 complement(1807103..1807297) 1 NC_009512.1 cytochrome c oxidase, cbb3-type, CcoQ subunit 1807297 5193523 Pput_1616 Pseudomonas putida F1 cytochrome c oxidase, cbb3-type, CcoQ subunit YP_001266956.1 1807103 R 351746 CDS YP_001266957.1 148546855 5190681 complement(1807303..1807911) 1 NC_009512.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1807911 5190681 Pput_1617 Pseudomonas putida F1 cbb3-type cytochrome c oxidase subunit II YP_001266957.1 1807303 R 351746 CDS YP_001266958.1 148546856 5190682 complement(1807925..1809349) 1 NC_009512.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1809349 5190682 Pput_1618 Pseudomonas putida F1 cbb3-type cytochrome c oxidase subunit I YP_001266958.1 1807925 R 351746 CDS YP_001266959.1 148546857 5192736 1809400..1810092 1 NC_009512.1 hypothetical protein 1810092 5192736 Pput_1619 Pseudomonas putida F1 hypothetical protein YP_001266959.1 1809400 D 351746 CDS YP_001266960.1 148546858 5192737 complement(1810207..1810491) 1 NC_009512.1 PFAM: protein of unknown function DUF1255; hypothetical protein 1810491 5192737 Pput_1620 Pseudomonas putida F1 hypothetical protein YP_001266960.1 1810207 R 351746 CDS YP_001266961.1 148546859 5193379 complement(1810566..1811117) 1 NC_009512.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease 1811117 5193379 Pput_1621 Pseudomonas putida F1 exonuclease YP_001266961.1 1810566 R 351746 CDS YP_001266962.1 148546860 5193380 1811289..1812089 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1812089 5193380 Pput_1622 Pseudomonas putida F1 extracellular solute-binding protein YP_001266962.1 1811289 D 351746 CDS YP_001266963.1 148546861 5194600 complement(1812130..1812660) 1 NC_009512.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 1812660 5194600 Pput_1623 Pseudomonas putida F1 extracytoplasmic-function sigma-70 factor YP_001266963.1 1812130 R 351746 CDS YP_001266964.1 148546862 5194601 1812969..1825922 1 NC_009512.1 catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase 1825922 5194601 Pput_1624 Pseudomonas putida F1 peptide synthase YP_001266964.1 1812969 D 351746 CDS YP_001266965.1 148546863 5193063 complement(1825965..1826423) 1 NC_009512.1 multidrug ABC transporter ATPase-like protein 1826423 5193063 Pput_1625 Pseudomonas putida F1 multidrug ABC transporter ATPase-like protein YP_001266965.1 1825965 R 351746 CDS YP_001266966.1 148546864 5193064 complement(1826667..1827404) 1 NC_009512.1 hypothetical protein 1827404 5193064 Pput_1626 Pseudomonas putida F1 hypothetical protein YP_001266966.1 1826667 R 351746 CDS YP_001266967.1 148546865 5191574 complement(1828232..1828990) 1 NC_009512.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 1828990 dsbG 5191574 dsbG Pseudomonas putida F1 disulfide isomerase/thiol-disulfide oxidase YP_001266967.1 1828232 R 351746 CDS YP_001266968.1 148546866 5191575 complement(1828992..1829828) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 1829828 5191575 Pput_1628 Pseudomonas putida F1 redoxin domain-containing protein YP_001266968.1 1828992 R 351746 CDS YP_001266969.1 148546867 5192933 complement(1829828..1831543) 1 NC_009512.1 PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; protein-disulfide reductase 1831543 5192933 Pput_1629 Pseudomonas putida F1 protein-disulfide reductase YP_001266969.1 1829828 R 351746 CDS YP_001266970.1 148546868 5192934 1832202..1835033 1 NC_009512.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 1835033 5192934 Pput_1630 Pseudomonas putida F1 aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit YP_001266970.1 1832202 D 351746 CDS YP_001266971.1 148546869 5195222 1835026..1835562 1 NC_009512.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1835562 5195222 Pput_1631 Pseudomonas putida F1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001266971.1 1835026 D 351746 CDS YP_001266972.1 148546870 5195223 1835565..1836776 1 NC_009512.1 PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 1836776 5195223 Pput_1632 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001266972.1 1835565 D 351746 CDS YP_001266973.1 148546871 5192076 1836780..1837751 1 NC_009512.1 PFAM: protein of unknown function DUF182; hypothetical protein 1837751 5192076 Pput_1633 Pseudomonas putida F1 hypothetical protein YP_001266973.1 1836780 D 351746 CDS YP_001266974.1 148546872 5192077 1837748..1838314 1 NC_009512.1 MobA-like protein 1838314 5192077 Pput_1634 Pseudomonas putida F1 MobA-like protein YP_001266974.1 1837748 D 351746 CDS YP_001266975.1 148546873 5193817 complement(1838331..1838957) 1 NC_009512.1 PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein 1838957 5193817 Pput_1635 Pseudomonas putida F1 GAD-like protein YP_001266975.1 1838331 R 351746 CDS YP_001266976.1 148546874 5193818 complement(1838980..1839597) 1 NC_009512.1 PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein 1839597 5193818 Pput_1636 Pseudomonas putida F1 GAD-like protein YP_001266976.1 1838980 R 351746 CDS YP_001266977.1 148546875 5191065 complement(1839616..1840962) 1 NC_009512.1 hypothetical protein 1840962 5191065 Pput_1637 Pseudomonas putida F1 hypothetical protein YP_001266977.1 1839616 R 351746 CDS YP_001266978.1 148546876 5191066 1841221..1841904 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1841904 5191066 Pput_1638 Pseudomonas putida F1 two component transcriptional regulator YP_001266978.1 1841221 D 351746 CDS YP_001266979.1 148546877 5194506 1841901..1843223 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1843223 5194506 Pput_1639 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001266979.1 1841901 D 351746 CDS YP_001266980.1 148546878 5194507 1843550..1844941 1 NC_009512.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1844941 5194507 Pput_1640 Pseudomonas putida F1 diaminobutyrate--2-oxoglutarate aminotransferase YP_001266980.1 1843550 D 351746 CDS YP_001266981.1 148546879 5191057 complement(1845016..1846137) 1 NC_009512.1 PFAM: Transcription factor jumonji; SMART: transcription factor jumonji, jmjC domain protein; transcription factor jumonji 1846137 5191057 Pput_1641 Pseudomonas putida F1 transcription factor jumonji YP_001266981.1 1845016 R 351746 CDS YP_001266982.1 148546880 5191058 complement(1846202..1847491) 1 NC_009512.1 PFAM: aminotransferase, class V; class V aminotransferase 1847491 5191058 Pput_1642 Pseudomonas putida F1 class V aminotransferase YP_001266982.1 1846202 R 351746 CDS YP_001266983.1 148546881 5192854 complement(1847508..1848926) 1 NC_009512.1 PFAM: peptidase M19, renal dipeptidase; peptidase M19 1848926 5192854 Pput_1643 Pseudomonas putida F1 peptidase M19 YP_001266983.1 1847508 R 351746 CDS YP_001266984.1 148546882 5192855 1849037..1850662 1 NC_009512.1 hypothetical protein 1850662 5192855 Pput_1644 Pseudomonas putida F1 hypothetical protein YP_001266984.1 1849037 D 351746 CDS YP_001266985.1 148546883 5192566 1850784..1851260 1 NC_009512.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor 1851260 5192566 Pput_1645 Pseudomonas putida F1 RNA polymerase sigma factor YP_001266985.1 1850784 D 351746 CDS YP_001266986.1 148546884 5192567 1851429..1851908 1 NC_009512.1 hypothetical protein 1851908 5192567 Pput_1646 Pseudomonas putida F1 hypothetical protein YP_001266986.1 1851429 D 351746 CDS YP_001266987.1 148546885 5192223 1851981..1853306 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1853306 5192223 Pput_1647 Pseudomonas putida F1 major facilitator superfamily transporter YP_001266987.1 1851981 D 351746 CDS YP_001266988.1 148546886 5192224 1853401..1853697 1 NC_009512.1 hypothetical protein 1853697 5192224 Pput_1648 Pseudomonas putida F1 hypothetical protein YP_001266988.1 1853401 D 351746 CDS YP_001266989.1 148546887 5192441 1853700..1854101 1 NC_009512.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1854101 5192441 Pput_1649 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001266989.1 1853700 D 351746 CDS YP_001266990.1 148546888 5192442 complement(1854173..1855855) 1 NC_009512.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 1855855 5192442 Pput_1650 Pseudomonas putida F1 electron-transferring-flavoprotein dehydrogenase YP_001266990.1 1854173 R 351746 CDS YP_001266991.1 148546889 5194154 1856391..1857140 1 NC_009512.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; electron transfer flavoprotein subunit alpha/beta-like protein 1857140 5194154 Pput_1651 Pseudomonas putida F1 electron transfer flavoprotein subunit alpha/beta-like protein YP_001266991.1 1856391 D 351746 CDS YP_001266992.1 148546890 5194155 1857141..1858070 1 NC_009512.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; electron transfer flavoprotein subunit alpha-like protein 1858070 5194155 Pput_1652 Pseudomonas putida F1 electron transfer flavoprotein subunit alpha-like protein YP_001266992.1 1857141 D 351746 CDS YP_001266993.1 148546891 5193510 1858146..1858967 1 NC_009512.1 amino acid ABC transporter periplasmic protein 1858967 5193510 Pput_1653 Pseudomonas putida F1 amino acid ABC transporter periplasmic protein YP_001266993.1 1858146 D 351746 CDS YP_001266994.1 148546892 5193511 1858977..1859330 1 NC_009512.1 hypothetical protein 1859330 5193511 Pput_1654 Pseudomonas putida F1 hypothetical protein YP_001266994.1 1858977 D 351746 CDS YP_001266995.1 148546893 5194757 1859327..1860139 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1860139 5194757 Pput_1655 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001266995.1 1859327 D 351746 CDS YP_001266996.1 148546894 5194758 1860224..1861753 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1861753 5194758 Pput_1656 Pseudomonas putida F1 GntR family transcriptional regulator YP_001266996.1 1860224 D 351746 CDS YP_001266997.1 148546895 5190550 1861818..1862252 1 NC_009512.1 hypothetical protein 1862252 5190550 Pput_1657 Pseudomonas putida F1 hypothetical protein YP_001266997.1 1861818 D 351746 CDS YP_001266998.1 148546896 5190551 1862382..1862636 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 1862636 5190551 Pput_1658 Pseudomonas putida F1 hypothetical protein YP_001266998.1 1862382 D 351746 CDS YP_001266999.1 148546897 5193296 1862667..1863275 1 NC_009512.1 PFAM: lipid-binding START domain protein; lipid-binding START domain-containing protein 1863275 5193296 Pput_1659 Pseudomonas putida F1 lipid-binding START domain-containing protein YP_001266999.1 1862667 D 351746 CDS YP_001267000.1 148546898 5193297 complement(1863389..1864678) 1 NC_009512.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1864678 gltA 5193297 gltA Pseudomonas putida F1 type II citrate synthase YP_001267000.1 1863389 R 351746 CDS YP_001267001.1 148546899 5194656 1865031..1865417 1 NC_009512.1 TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 1865417 5194656 Pput_1661 Pseudomonas putida F1 succinate dehydrogenase, cytochrome b556 subunit YP_001267001.1 1865031 D 351746 CDS YP_001267002.1 148546900 5194657 1865411..1865779 1 NC_009512.1 TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; succinate dehydrogenase, hydrophobic membrane anchor protein 1865779 5194657 Pput_1662 Pseudomonas putida F1 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001267002.1 1865411 D 351746 CDS YP_001267003.1 148546901 5194267 1865783..1867555 1 NC_009512.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1867555 sdhA 5194267 sdhA Pseudomonas putida F1 succinate dehydrogenase flavoprotein subunit YP_001267003.1 1865783 D 351746 CDS YP_001267004.1 148546902 5194268 1867567..1868271 1 NC_009512.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1868271 sdhB 5194268 sdhB Pseudomonas putida F1 succinate dehydrogenase iron-sulfur subunit YP_001267004.1 1867567 D 351746 CDS YP_001267005.1 148546903 5193034 1868518..1871349 1 NC_009512.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1871349 sucA 5193034 sucA Pseudomonas putida F1 2-oxoglutarate dehydrogenase E1 component YP_001267005.1 1868518 D 351746 CDS YP_001267006.1 148546904 5193035 1871392..1872615 1 NC_009512.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1872615 5193035 Pput_1666 Pseudomonas putida F1 dihydrolipoamide succinyltransferase YP_001267006.1 1871392 D 351746 CDS YP_001267007.1 148546905 5194986 1872709..1874145 1 NC_009512.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1874145 5194986 Pput_1667 Pseudomonas putida F1 dihydrolipoamide dehydrogenase YP_001267007.1 1872709 D 351746 CDS YP_001267008.1 148546906 5194987 1874317..1875483 1 NC_009512.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1875483 sucC 5194987 sucC Pseudomonas putida F1 succinyl-CoA synthetase subunit beta YP_001267008.1 1874317 D 351746 CDS YP_001267009.1 148546907 5194636 1875483..1876367 1 NC_009512.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1876367 5194636 Pput_1669 Pseudomonas putida F1 succinyl-CoA synthetase subunit alpha YP_001267009.1 1875483 D 351746 CDS YP_001267010.1 148546908 5194637 1876771..1878084 1 NC_009512.1 PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1878084 5194637 Pput_1670 Pseudomonas putida F1 branched-chain amino acid transport system II carrier protein YP_001267010.1 1876771 D 351746 CDS YP_001267011.1 148546909 5193220 1878320..1879069 1 NC_009512.1 PFAM: protein of unknown function DUF599; hypothetical protein 1879069 5193220 Pput_1671 Pseudomonas putida F1 hypothetical protein YP_001267011.1 1878320 D 351746 CDS YP_001267012.1 148546910 5193221 complement(1879097..1879639) 1 NC_009512.1 hypothetical protein 1879639 5193221 Pput_1672 Pseudomonas putida F1 hypothetical protein YP_001267012.1 1879097 R 351746 CDS YP_001267013.1 148546911 5190489 complement(1879636..1880832) 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase 1880832 5190489 Pput_1673 Pseudomonas putida F1 peptidase YP_001267013.1 1879636 R 351746 CDS YP_001267014.1 148546912 5190490 1881082..1896774 1 NC_009512.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1896774 5190490 Pput_1674 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001267014.1 1881082 D 351746 CDS YP_001267015.1 148546913 5195251 1896774..1900163 1 NC_009512.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1900163 5195251 Pput_1675 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001267015.1 1896774 D 351746 CDS YP_001267016.1 148546914 5195252 1900176..1910474 1 NC_009512.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1910474 5195252 Pput_1676 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001267016.1 1900176 D 351746 CDS YP_001267017.1 148546915 5193762 1910471..1913647 1 NC_009512.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1913647 5193762 Pput_1677 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001267017.1 1910471 D 351746 CDS YP_001267018.1 148546916 5193763 1913956..1916448 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1916448 5193763 Pput_1678 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267018.1 1913956 D 351746 CDS YP_001267019.1 148546917 5192778 complement(1916506..1917384) 1 NC_009512.1 PFAM: protein of unknown function DUF323; hypothetical protein 1917384 5192778 Pput_1679 Pseudomonas putida F1 hypothetical protein YP_001267019.1 1916506 R 351746 CDS YP_001267020.1 148546918 5192779 complement(1917422..1921639) 1 NC_009512.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1921639 5192779 Pput_1680 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001267020.1 1917422 R 351746 CDS YP_001267021.1 148546919 5193923 complement(1921846..1923534) 1 NC_009512.1 TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 1923534 5193923 Pput_1681 Pseudomonas putida F1 cyclic peptide transporter YP_001267021.1 1921846 R 351746 CDS YP_001267022.1 148546920 5193924 complement(1923518..1924537) 1 NC_009512.1 hypothetical protein 1924537 5193924 Pput_1682 Pseudomonas putida F1 hypothetical protein YP_001267022.1 1923518 R 351746 CDS YP_001267023.1 148546921 5195453 complement(1924614..1926053) 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 1926053 5195453 Pput_1683 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001267023.1 1924614 R 351746 CDS YP_001267024.1 148546922 5195454 complement(1926050..1928020) 1 NC_009512.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; ABC transporter-like protein 1928020 5195454 Pput_1684 Pseudomonas putida F1 ABC transporter-like protein YP_001267024.1 1926050 R 351746 CDS YP_001267025.1 148546923 5194103 complement(1928021..1929184) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1929184 5194103 Pput_1685 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001267025.1 1928021 R 351746 CDS YP_001267026.1 148546924 5194104 complement(1929390..1929662) 1 NC_009512.1 hypothetical protein 1929662 5194104 Pput_1686 Pseudomonas putida F1 hypothetical protein YP_001267026.1 1929390 R 351746 CDS YP_001267027.1 148546925 5192120 1929817..1930293 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1930293 5192120 Pput_1687 Pseudomonas putida F1 thioesterase superfamily protein YP_001267027.1 1929817 D 351746 CDS YP_001267028.1 148546926 5192121 1930290..1930772 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1930772 5192121 Pput_1688 Pseudomonas putida F1 thioesterase superfamily protein YP_001267028.1 1930290 D 351746 CDS YP_001267029.1 148546927 5194037 1930842..1932746 1 NC_009512.1 molecular chaperone; heat shock protein 90 1932746 5194037 Pput_1689 Pseudomonas putida F1 heat shock protein 90 YP_001267029.1 1930842 D 351746 CDS YP_001267030.1 148546928 5194038 1932810..1933535 1 NC_009512.1 PFAM: dienelactone hydrolase; dienelactone hydrolase 1933535 5194038 Pput_1690 Pseudomonas putida F1 dienelactone hydrolase YP_001267030.1 1932810 D 351746 CDS YP_001267031.1 148546929 5194604 complement(1933825..1934688) 1 NC_009512.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein 1934688 5194604 Pput_1691 Pseudomonas putida F1 pirin domain-containing protein YP_001267031.1 1933825 R 351746 CDS YP_001267032.1 148546930 5194605 1934791..1935813 1 NC_009512.1 PFAM: amidohydrolase 2; amidohydrolase 2 1935813 5194605 Pput_1692 Pseudomonas putida F1 amidohydrolase 2 YP_001267032.1 1934791 D 351746 CDS YP_001267033.1 148546931 5194548 complement(1935971..1937191) 1 NC_009512.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1937191 5194548 Pput_1693 Pseudomonas putida F1 3-oxoacyl-ACP synthase YP_001267033.1 1935971 R 351746 CDS YP_001267034.1 148546932 5194549 complement(1937203..1937718) 1 NC_009512.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1937718 5194549 Pput_1694 Pseudomonas putida F1 3-hydroxydecanoyl-ACP dehydratase YP_001267034.1 1937203 R 351746 CDS YP_001267035.1 148546933 5194732 complement(1937926..1939857) 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 1939857 5194732 Pput_1695 Pseudomonas putida F1 integral membrane sensor hybrid histidine kinase YP_001267035.1 1937926 R 351746 CDS YP_001267036.1 148546934 5194733 complement(1939854..1940744) 1 NC_009512.1 hypothetical protein 1940744 5194733 Pput_1696 Pseudomonas putida F1 hypothetical protein YP_001267036.1 1939854 R 351746 CDS YP_001267037.1 148546935 5194990 complement(1940744..1942858) 1 NC_009512.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug 1942858 5194990 Pput_1697 Pseudomonas putida F1 TonB-dependent receptor, plug YP_001267037.1 1940744 R 351746 CDS YP_001267038.1 148546936 5194991 1943134..1944159 1 NC_009512.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1944159 gpsA 5194991 gpsA Pseudomonas putida F1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001267038.1 1943134 D 351746 CDS YP_001267039.1 148546937 5195247 1944196..1944543 1 NC_009512.1 hypothetical protein 1944543 5195247 Pput_1699 Pseudomonas putida F1 hypothetical protein YP_001267039.1 1944196 D 351746 CDS YP_001267040.1 148546938 5195248 1944540..1944998 1 NC_009512.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase SixA 1944998 5195248 Pput_1700 Pseudomonas putida F1 phosphohistidine phosphatase SixA YP_001267040.1 1944540 D 351746 CDS YP_001267041.1 148546939 5194241 1945149..1945535 1 NC_009512.1 hypothetical protein 1945535 5194241 Pput_1701 Pseudomonas putida F1 hypothetical protein YP_001267041.1 1945149 D 351746 CDS YP_001267042.1 148546940 5194242 1945553..1946416 1 NC_009512.1 hypothetical protein 1946416 5194242 Pput_1702 Pseudomonas putida F1 hypothetical protein YP_001267042.1 1945553 D 351746 CDS YP_001267043.1 148546941 5192495 1946413..1947267 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1947267 5192495 Pput_1703 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001267043.1 1946413 D 351746 CDS YP_001267044.1 148546942 5192496 1947377..1948171 1 NC_009512.1 hypothetical protein 1948171 5192496 Pput_1704 Pseudomonas putida F1 hypothetical protein YP_001267044.1 1947377 D 351746 CDS YP_001267045.1 148546943 5192474 1948184..1949233 1 NC_009512.1 PFAM: protein of unknown function UPF0118; hypothetical protein 1949233 5192474 Pput_1705 Pseudomonas putida F1 hypothetical protein YP_001267045.1 1948184 D 351746 CDS YP_001267046.1 148546944 5192475 1949472..1949561 1 NC_009512.1 TIGRFAM: K+-transporting ATPase, F subunit; K+-transporting ATPase F 1949561 5192475 Pput_1706 Pseudomonas putida F1 K+-transporting ATPase F YP_001267046.1 1949472 D 351746 CDS YP_001267047.1 148546945 5192748 1949571..1951265 1 NC_009512.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 1951265 5192748 Pput_1707 Pseudomonas putida F1 potassium-transporting ATPase A YP_001267047.1 1949571 D 351746 CDS YP_001267048.1 148546946 5192749 1951275..1953329 1 NC_009512.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase B 1953329 5192749 Pput_1708 Pseudomonas putida F1 potassium-transporting ATPase B YP_001267048.1 1951275 D 351746 CDS YP_001267049.1 148546947 5193288 1953340..1953897 1 NC_009512.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase C 1953897 5193288 Pput_1709 Pseudomonas putida F1 potassium-transporting ATPase C YP_001267049.1 1953340 D 351746 CDS YP_001267050.1 148546948 5193289 1954047..1956701 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 1956701 5193289 Pput_1710 Pseudomonas putida F1 osmosensitive K+ channel signal transduction histidine kinase YP_001267050.1 1954047 D 351746 CDS YP_001267051.1 148546949 5190732 1956698..1957393 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1957393 5190732 Pput_1711 Pseudomonas putida F1 two component transcriptional regulator YP_001267051.1 1956698 D 351746 CDS YP_001267052.1 148546950 5190733 complement(1957441..1958346) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1958346 5190733 Pput_1712 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267052.1 1957441 R 351746 CDS YP_001267053.1 148546951 5192106 complement(1958417..1961347) 1 NC_009512.1 PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; hypothetical protein 1961347 5192106 Pput_1713 Pseudomonas putida F1 hypothetical protein YP_001267053.1 1958417 R 351746 CDS YP_001267054.1 148546952 5192107 1961539..1963728 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1963728 5192107 Pput_1714 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267054.1 1961539 D 351746 CDS YP_001267055.1 148546953 5190860 complement(1963898..1965505) 1 NC_009512.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; ABC transporter-like protein 1965505 5190860 Pput_1715 Pseudomonas putida F1 ABC transporter-like protein YP_001267055.1 1963898 R 351746 CDS YP_001267056.1 148546954 5190861 complement(1965507..1966526) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1966526 5190861 Pput_1716 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267056.1 1965507 R 351746 CDS YP_001267057.1 148546955 5192881 complement(1966528..1967601) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1967601 5192881 Pput_1717 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267057.1 1966528 R 351746 CDS YP_001267058.1 148546956 5192882 complement(1967603..1969438) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1969438 5192882 Pput_1718 Pseudomonas putida F1 extracellular solute-binding protein YP_001267058.1 1967603 R 351746 CDS YP_001267059.1 148546957 5191444 complement(1969435..1971375) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1971375 5191444 Pput_1719 Pseudomonas putida F1 extracellular solute-binding protein YP_001267059.1 1969435 R 351746 CDS YP_001267060.1 148546958 5191445 complement(1971485..1972915) 1 NC_009512.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; MltD domain-containing protein 1972915 5191445 Pput_1720 Pseudomonas putida F1 MltD domain-containing protein YP_001267060.1 1971485 R 351746 CDS YP_001267061.1 148546959 5190435 complement(1973016..1973795) 1 NC_009512.1 PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 1973795 5190435 Pput_1721 Pseudomonas putida F1 hydroxyacylglutathione hydrolase YP_001267061.1 1973016 R 351746 CDS YP_001267062.1 148546960 5190436 1973881..1974654 1 NC_009512.1 hypothetical protein 1974654 5190436 Pput_1722 Pseudomonas putida F1 hypothetical protein YP_001267062.1 1973881 D 351746 CDS YP_001267063.1 148546961 5191428 1974670..1975116 1 NC_009512.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1975116 rnhA 5191428 rnhA Pseudomonas putida F1 ribonuclease H YP_001267063.1 1974670 D 351746 CDS YP_001267064.1 148546962 5191429 1975167..1975925 1 NC_009512.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1975925 5191429 Pput_1724 Pseudomonas putida F1 DNA polymerase III subunit epsilon YP_001267064.1 1975167 D 351746 CDS YP_001267065.1 148546963 5191148 1976191..1978440 1 NC_009512.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 1978440 5191148 Pput_1725 Pseudomonas putida F1 lysine decarboxylase YP_001267065.1 1976191 D 351746 CDS YP_001267066.1 148546964 5191149 complement(1978424..1978642) 1 NC_009512.1 hypothetical protein 1978642 5191149 Pput_1726 Pseudomonas putida F1 hypothetical protein YP_001267066.1 1978424 R 351746 CDS YP_001267067.1 148546965 5190254 1978799..1979359 1 NC_009512.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1979359 5190254 Pput_1727 Pseudomonas putida F1 NADPH-dependent FMN reductase YP_001267067.1 1978799 D 351746 CDS YP_001267068.1 148546966 5190255 complement(1979463..1981535) 1 NC_009512.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 1981535 5190255 Pput_1728 Pseudomonas putida F1 TonB-dependent receptor YP_001267068.1 1979463 R 351746 CDS YP_001267069.1 148546967 5190836 1981756..1982004 1 NC_009512.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; LuxR family transcriptional regulator 1982004 5190836 Pput_1729 Pseudomonas putida F1 LuxR family transcriptional regulator YP_001267069.1 1981756 D 351746 CDS YP_001267070.1 148546968 5190837 1982017..1982364 1 NC_009512.1 hypothetical protein 1982364 5190837 Pput_1730 Pseudomonas putida F1 hypothetical protein YP_001267070.1 1982017 D 351746 CDS YP_001267071.1 148546969 5193618 1982357..1982719 1 NC_009512.1 hypothetical protein 1982719 5193618 Pput_1731 Pseudomonas putida F1 hypothetical protein YP_001267071.1 1982357 D 351746 CDS YP_001267072.1 148546970 5193619 complement(1982716..1983093) 1 NC_009512.1 PFAM: bacteriophage CI repressor; bacteriophage CI repressor 1983093 5193619 Pput_1732 Pseudomonas putida F1 bacteriophage CI repressor YP_001267072.1 1982716 R 351746 CDS YP_001267073.1 148546971 5192421 1983273..1983536 1 NC_009512.1 PFAM: phage transcriptional activator, Ogr/delta; phage transcriptional activator, Ogr/delta 1983536 5192421 Pput_1733 Pseudomonas putida F1 phage transcriptional activator, Ogr/delta YP_001267073.1 1983273 D 351746 CDS YP_001267074.1 148546972 5192422 complement(1983627..1985096) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1985096 5192422 Pput_1734 Pseudomonas putida F1 NADH dehydrogenase subunit N YP_001267074.1 1983627 R 351746 CDS YP_001267075.1 148546973 5190417 complement(1985104..1986636) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1986636 5190417 Pput_1735 Pseudomonas putida F1 NADH dehydrogenase subunit M YP_001267075.1 1985104 R 351746 CDS YP_001267076.1 148546974 5190418 complement(1986677..1988530) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1988530 5190418 Pput_1736 Pseudomonas putida F1 NADH dehydrogenase subunit L YP_001267076.1 1986677 R 351746 CDS YP_001267077.1 148546975 5191917 complement(1988527..1988835) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1988835 5191917 Pput_1737 Pseudomonas putida F1 NADH dehydrogenase subunit K YP_001267077.1 1988527 R 351746 CDS YP_001267078.1 148546976 5191918 complement(1988839..1989339) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1989339 5191918 Pput_1738 Pseudomonas putida F1 NADH dehydrogenase subunit J YP_001267078.1 1988839 R 351746 CDS YP_001267079.1 148546977 5193952 complement(1989350..1989898) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1989898 5193952 Pput_1739 Pseudomonas putida F1 NADH dehydrogenase subunit I YP_001267079.1 1989350 R 351746 CDS YP_001267080.1 148546978 5193953 complement(1989910..1990917) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1990917 5193953 Pput_1740 Pseudomonas putida F1 NADH dehydrogenase subunit H YP_001267080.1 1989910 R 351746 CDS YP_001267081.1 148546979 5192792 complement(1990914..1993628) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1993628 5192792 Pput_1741 Pseudomonas putida F1 NADH dehydrogenase subunit G YP_001267081.1 1990914 R 351746 CDS YP_001267082.1 148546980 5192793 complement(1993761..1995122) 1 NC_009512.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F 1995122 5192793 Pput_1742 Pseudomonas putida F1 NADH dehydrogenase subunit I F YP_001267082.1 1993761 R 351746 CDS YP_001267083.1 148546981 5193821 complement(1995119..1995616) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1995616 5193821 Pput_1743 Pseudomonas putida F1 NADH dehydrogenase subunit E YP_001267083.1 1995119 R 351746 CDS YP_001267084.1 148546982 5193822 complement(1995619..1997400) 1 NC_009512.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1997400 5193822 Pput_1744 Pseudomonas putida F1 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001267084.1 1995619 R 351746 CDS YP_001267085.1 148546983 5192206 complement(1997480..1998157) 1 NC_009512.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1998157 5192206 Pput_1745 Pseudomonas putida F1 NADH dehydrogenase subunit B YP_001267085.1 1997480 R 351746 CDS YP_001267086.1 148546984 5192207 complement(1998167..1998580) 1 NC_009512.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1998580 5192207 Pput_1746 Pseudomonas putida F1 NADH dehydrogenase subunit A YP_001267086.1 1998167 R 351746 CDS YP_001267087.1 148546985 5193641 complement(1998964..1999626) 1 NC_009512.1 PFAM: YhhN family protein; hypothetical protein 1999626 5193641 Pput_1747 Pseudomonas putida F1 hypothetical protein YP_001267087.1 1998964 R 351746 CDS YP_001267088.1 148546986 5193642 complement(1999917..2001242) 1 NC_009512.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 2001242 5193642 Pput_1748 Pseudomonas putida F1 isocitrate lyase YP_001267088.1 1999917 R 351746 CDS YP_001267089.1 148546987 5191358 complement(2001733..2002467) 1 NC_009512.1 PFAM: NolW domain protein; NolW domain-containing protein 2002467 5191358 Pput_1749 Pseudomonas putida F1 NolW domain-containing protein YP_001267089.1 2001733 R 351746 CDS YP_001267090.1 148546988 5191359 2002623..2003798 1 NC_009512.1 hypothetical protein 2003798 5191359 Pput_1750 Pseudomonas putida F1 hypothetical protein YP_001267090.1 2002623 D 351746 CDS YP_001267091.1 148546989 5194209 2003852..2005561 1 NC_009512.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2005561 5194209 Pput_1751 Pseudomonas putida F1 peptidase S8/S53 subtilisin kexin sedolisin YP_001267091.1 2003852 D 351746 CDS YP_001267092.1 148546990 5194210 2005645..2007087 1 NC_009512.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 2007087 5194210 Pput_1752 Pseudomonas putida F1 sulfate transporter YP_001267092.1 2005645 D 351746 CDS YP_001267093.1 148546991 5194101 complement(2007200..2009311) 1 NC_009512.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2009311 5194101 Pput_1753 Pseudomonas putida F1 elongation factor G YP_001267093.1 2007200 R 351746 CDS YP_001267094.1 148546992 5194102 complement(2009385..2009867) 1 NC_009512.1 hypothetical protein 2009867 5194102 Pput_1754 Pseudomonas putida F1 hypothetical protein YP_001267094.1 2009385 R 351746 CDS YP_001267095.1 148546993 5194630 2010057..2010359 1 NC_009512.1 hypothetical protein 2010359 5194630 Pput_1755 Pseudomonas putida F1 hypothetical protein YP_001267095.1 2010057 D 351746 CDS YP_001267096.1 148546994 5194631 complement(2010363..2011613) 1 NC_009512.1 PFAM: aminotransferase class-III; class III aminotransferase 2011613 5194631 Pput_1756 Pseudomonas putida F1 class III aminotransferase YP_001267096.1 2010363 R 351746 CDS YP_001267097.1 148546995 5193602 complement(2011794..2012690) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2012690 5193602 Pput_1757 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267097.1 2011794 R 351746 CDS YP_001267098.1 148546996 5193603 2012948..2014330 1 NC_009512.1 PFAM: Spore germination protein; amino acid permease-associated region; amino acid permease-associated protein 2014330 5193603 Pput_1758 Pseudomonas putida F1 amino acid permease-associated protein YP_001267098.1 2012948 D 351746 CDS YP_001267099.1 148546997 5192637 2014388..2014885 1 NC_009512.1 hypothetical protein 2014885 5192637 Pput_1759 Pseudomonas putida F1 hypothetical protein YP_001267099.1 2014388 D 351746 CDS YP_001267100.1 148546998 5192638 2014973..2015668 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2015668 5192638 Pput_1760 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001267100.1 2014973 D 351746 CDS YP_001267101.1 148546999 5192394 complement(2015849..2017465) 1 NC_009512.1 PFAM: phosphate transporter; phosphate transporter 2017465 5192394 Pput_1761 Pseudomonas putida F1 phosphate transporter YP_001267101.1 2015849 R 351746 CDS YP_001267102.1 148547000 5192395 2017595..2017981 1 NC_009512.1 PFAM: protein of unknown function DUF488; hypothetical protein 2017981 5192395 Pput_1762 Pseudomonas putida F1 hypothetical protein YP_001267102.1 2017595 D 351746 CDS YP_001267103.1 148547001 5191326 2017992..2018435 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2018435 5191326 Pput_1763 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267103.1 2017992 D 351746 CDS YP_001267104.1 148547002 5191327 2018543..2018932 1 NC_009512.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2018932 5191327 Pput_1764 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267104.1 2018543 D 351746 CDS YP_001267105.1 148547003 5192116 2018996..2019634 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2019634 5192116 Pput_1765 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001267105.1 2018996 D 351746 CDS YP_001267106.1 148547004 5192117 2019641..2021464 1 NC_009512.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2021464 uvrC 5192117 uvrC Pseudomonas putida F1 excinuclease ABC subunit C YP_001267106.1 2019641 D 351746 CDS YP_001267107.1 148547005 5190284 2021498..2022058 1 NC_009512.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2022058 5190284 Pput_1767 Pseudomonas putida F1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001267107.1 2021498 D 351746 CDS YP_001267108.1 148547006 5190602 complement(2022355..2023032) 1 NC_009512.1 protein-disulfide isomerase-like protein 2023032 5190602 Pput_1768 Pseudomonas putida F1 protein-disulfide isomerase-like protein YP_001267108.1 2022355 R 351746 CDS YP_001267109.1 148547007 5193901 complement(2023705..2024220) 1 NC_009512.1 PFAM: Sigma-70, region 4 type 2; sigma-70 factor 2024220 5193901 Pput_1770 Pseudomonas putida F1 sigma-70 factor YP_001267109.1 2023705 R 351746 CDS YP_001267110.1 148547008 5194169 complement(2024669..2024968) 1 NC_009512.1 hypothetical protein 2024968 5194169 Pput_1771 Pseudomonas putida F1 hypothetical protein YP_001267110.1 2024669 R 351746 CDS YP_001267111.1 148547009 5192161 2025099..2025752 1 NC_009512.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative prophage repressor 2025752 5192161 Pput_1772 Pseudomonas putida F1 putative prophage repressor YP_001267111.1 2025099 D 351746 CDS YP_001267112.1 148547010 5192162 2025809..2026483 1 NC_009512.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative prophage repressor 2026483 5192162 Pput_1773 Pseudomonas putida F1 putative prophage repressor YP_001267112.1 2025809 D 351746 CDS YP_001267113.1 148547011 5194923 complement(2026631..2028583) 1 NC_009512.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L 2028583 5194923 Pput_1774 Pseudomonas putida F1 carbamoyl-phosphate synthase subunit L YP_001267113.1 2026631 R 351746 CDS YP_001267114.1 148547012 5194924 complement(2028580..2029395) 1 NC_009512.1 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 2029395 5194924 Pput_1775 Pseudomonas putida F1 gamma-carboxygeranoyl-CoA hydratase YP_001267114.1 2028580 R 351746 CDS YP_001267115.1 148547013 5194514 complement(2029399..2031006) 1 NC_009512.1 PFAM: carboxyl transferase; propionyl-CoA carboxylase 2031006 5194514 Pput_1776 Pseudomonas putida F1 propionyl-CoA carboxylase YP_001267115.1 2029399 R 351746 CDS YP_001267116.1 148547014 5194515 complement(2031026..2032189) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2032189 5194515 Pput_1777 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267116.1 2031026 R 351746 CDS YP_001267117.1 148547015 5192004 2032514..2034196 1 NC_009512.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 2034196 5192004 Pput_1778 Pseudomonas putida F1 AMP-binding domain-containing protein YP_001267117.1 2032514 D 351746 CDS YP_001267118.1 148547016 5192509 complement(2034635..2035492) 1 NC_009512.1 hypothetical protein 2035492 5192509 Pput_1780 Pseudomonas putida F1 hypothetical protein YP_001267118.1 2034635 R 351746 CDS YP_001267119.1 148547017 5192510 complement(2036341..2037477) 1 NC_009512.1 hypothetical protein 2037477 5192510 Pput_1782 Pseudomonas putida F1 hypothetical protein YP_001267119.1 2036341 R 351746 CDS YP_001267120.1 148547018 5192947 2038006..2040024 1 NC_009512.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 2040024 5192947 Pput_1783 Pseudomonas putida F1 alpha amylase YP_001267120.1 2038006 D 351746 CDS YP_001267121.1 148547019 5192542 2040179..2043499 1 NC_009512.1 TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 2043499 5192542 Pput_1784 Pseudomonas putida F1 trehalose synthase YP_001267121.1 2040179 D 351746 CDS YP_001267122.1 148547020 5192543 2043496..2045706 1 NC_009512.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2045706 5192543 Pput_1785 Pseudomonas putida F1 glycogen branching protein YP_001267122.1 2043496 D 351746 CDS YP_001267123.1 148547021 5191088 complement(2045921..2046997) 1 NC_009512.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; outer membrane autotransporter 2046997 5191088 Pput_1786 Pseudomonas putida F1 outer membrane autotransporter YP_001267123.1 2045921 R 351746 CDS YP_001267124.1 148547022 5191089 complement(2047315..2048109) 1 NC_009512.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2048109 5191089 Pput_1787 Pseudomonas putida F1 endonuclease/exonuclease/phosphatase YP_001267124.1 2047315 R 351746 CDS YP_001267125.1 148547023 5191700 complement(2048231..2050384) 1 NC_009512.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 2050384 5191700 Pput_1788 Pseudomonas putida F1 glycogen debranching protein GlgX YP_001267125.1 2048231 R 351746 CDS YP_001267126.1 148547024 5191701 complement(2050519..2050785) 1 NC_009512.1 hypothetical protein 2050785 5191701 Pput_1789 Pseudomonas putida F1 hypothetical protein YP_001267126.1 2050519 R 351746 CDS YP_001267127.1 148547025 5191476 complement(2050800..2053574) 1 NC_009512.1 TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; maltooligosyl trehalose synthase 2053574 5191476 Pput_1790 Pseudomonas putida F1 maltooligosyl trehalose synthase YP_001267127.1 2050800 R 351746 CDS YP_001267128.1 148547026 5191477 complement(2053571..2055640) 1 NC_009512.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 2055640 5191477 Pput_1791 Pseudomonas putida F1 4-alpha-glucanotransferase YP_001267128.1 2053571 R 351746 CDS YP_001267129.1 148547027 5193905 complement(2055637..2057379) 1 NC_009512.1 TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 2057379 5193905 Pput_1792 Pseudomonas putida F1 malto-oligosyltrehalose trehalohydrolase YP_001267129.1 2055637 R 351746 CDS YP_001267130.1 148547028 5193906 complement(2057394..2058953) 1 NC_009512.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2058953 glgA 5193906 glgA Pseudomonas putida F1 glycogen synthase YP_001267130.1 2057394 R 351746 CDS YP_001267131.1 148547029 5190744 complement(2059602..2059757) 1 NC_009512.1 hypothetical protein 2059757 5190744 Pput_1794 Pseudomonas putida F1 hypothetical protein YP_001267131.1 2059602 R 351746 CDS YP_001267132.1 148547030 5190745 2059972..2060955 1 NC_009512.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2060955 5190745 Pput_1795 Pseudomonas putida F1 6-phosphogluconate dehydrogenase YP_001267132.1 2059972 D 351746 CDS YP_001267133.1 148547031 5191777 2060952..2062457 1 NC_009512.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2062457 5191777 Pput_1796 Pseudomonas putida F1 glucose-6-phosphate 1-dehydrogenase YP_001267133.1 2060952 D 351746 CDS YP_001267134.1 148547032 5191778 2062573..2064369 1 NC_009512.1 PFAM: glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 2064369 5191778 Pput_1797 Pseudomonas putida F1 glycoside hydrolase 15-like protein YP_001267134.1 2062573 D 351746 CDS YP_001267135.1 148547033 5192828 2064436..2064792 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2064792 5192828 Pput_1798 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001267135.1 2064436 D 351746 CDS YP_001267136.1 148547034 5192829 2064792..2065412 1 NC_009512.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 2065412 5192829 Pput_1799 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267136.1 2064792 D 351746 CDS YP_001267137.1 148547035 5190419 complement(2065593..2066867) 1 NC_009512.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2066867 5190419 Pput_1800 Pseudomonas putida F1 dihydropyrimidine dehydrogenase YP_001267137.1 2065593 R 351746 CDS YP_001267138.1 148547036 5190420 complement(2066868..2068304) 1 NC_009512.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2068304 5190420 Pput_1801 Pseudomonas putida F1 putative oxidoreductase YP_001267138.1 2066868 R 351746 CDS YP_001267139.1 148547037 5190933 complement(2068418..2069908) 1 NC_009512.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2069908 5190933 Pput_1802 Pseudomonas putida F1 phenylhydantoinase YP_001267139.1 2068418 R 351746 CDS YP_001267140.1 148547038 5190934 2070201..2071691 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2071691 5190934 Pput_1803 Pseudomonas putida F1 cytosine/purines uracil thiamine allantoin permease YP_001267140.1 2070201 D 351746 CDS YP_001267141.1 148547039 5193791 2071741..2073024 1 NC_009512.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2073024 5193791 Pput_1804 Pseudomonas putida F1 allantoate amidohydrolase YP_001267141.1 2071741 D 351746 CDS YP_001267142.1 148547040 5193792 complement(2073021..2073980) 1 NC_009512.1 PFAM: beta-lactamase domain protein; ribonuclease Z 2073980 5193792 Pput_1805 Pseudomonas putida F1 ribonuclease Z YP_001267142.1 2073021 R 351746 CDS YP_001267143.1 148547041 5193936 complement(2074068..2074613) 1 NC_009512.1 PFAM: Lipocalin family protein; lipocalin family protein 2074613 5193936 Pput_1806 Pseudomonas putida F1 lipocalin family protein YP_001267143.1 2074068 R 351746 CDS YP_001267144.1 148547042 5193937 complement(2074760..2076262) 1 NC_009512.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 2076262 nhaB 5193937 nhaB Pseudomonas putida F1 sodium/proton antiporter YP_001267144.1 2074760 R 351746 CDS YP_001267145.1 148547043 5192024 2076383..2077225 1 NC_009512.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2077225 5192024 Pput_1808 Pseudomonas putida F1 enoyl-CoA hydratase YP_001267145.1 2076383 D 351746 CDS YP_001267146.1 148547044 5192025 2077262..2078092 1 NC_009512.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2078092 nudC 5192025 nudC Pseudomonas putida F1 NADH pyrophosphatase YP_001267146.1 2077262 D 351746 CDS YP_001267147.1 148547045 5193942 complement(2078161..2078940) 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 2078940 5193942 Pput_1810 Pseudomonas putida F1 hypothetical protein YP_001267147.1 2078161 R 351746 CDS YP_001267148.1 148547046 5193943 complement(2079086..2079997) 1 NC_009512.1 hypothetical protein 2079997 5193943 Pput_1811 Pseudomonas putida F1 hypothetical protein YP_001267148.1 2079086 R 351746 CDS YP_001267149.1 148547047 5193707 complement(2080227..2081057) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2081057 5193707 Pput_1812 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001267149.1 2080227 R 351746 CDS YP_001267150.1 148547048 5193708 complement(2081243..2082532) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2082532 5193708 Pput_1813 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001267150.1 2081243 R 351746 CDS YP_001267151.1 148547049 5193946 complement(2082725..2084686) 1 NC_009512.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2084686 5193946 Pput_1814 Pseudomonas putida F1 DNA topoisomerase III YP_001267151.1 2082725 R 351746 CDS YP_001267152.1 148547050 5193947 complement(2084895..2085323) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2085323 5193947 Pput_1815 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267152.1 2084895 R 351746 CDS YP_001267153.1 148547051 5191521 complement(2085316..2086482) 1 NC_009512.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; cupin 4 family protein 2086482 5191521 Pput_1816 Pseudomonas putida F1 cupin 4 family protein YP_001267153.1 2085316 R 351746 CDS YP_001267154.1 148547052 5191522 complement(2086564..2087982) 1 NC_009512.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2087982 5191522 Pput_1817 Pseudomonas putida F1 adenylosuccinate lyase YP_001267154.1 2086564 R 351746 CDS YP_001267155.1 148547053 5193838 complement(2088093..2088719) 1 NC_009512.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2088719 5193838 Pput_1818 Pseudomonas putida F1 hypothetical protein YP_001267155.1 2088093 R 351746 CDS YP_001267156.1 148547054 5193839 complement(2088716..2089840) 1 NC_009512.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2089840 mnmA 5193839 mnmA Pseudomonas putida F1 tRNA-specific 2-thiouridylase MnmA YP_001267156.1 2088716 R 351746 CDS YP_001267157.1 148547055 5194089 complement(2089900..2090340) 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2090340 5194089 Pput_1820 Pseudomonas putida F1 NUDIX hydrolase YP_001267157.1 2089900 R 351746 CDS YP_001267158.1 148547056 5194090 complement(2090547..2092850) 1 NC_009512.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2092850 5194090 Pput_1821 Pseudomonas putida F1 isocitrate dehydrogenase YP_001267158.1 2090547 R 351746 CDS YP_001267159.1 148547057 5194350 2093187..2094443 1 NC_009512.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 2094443 5194350 Pput_1822 Pseudomonas putida F1 isocitrate dehydrogenase YP_001267159.1 2093187 D 351746 CDS YP_001267160.1 148547058 5194351 complement(2094515..2094781) 1 NC_009512.1 TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2094781 5194351 Pput_1823 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001267160.1 2094515 R 351746 CDS YP_001267161.1 148547059 5194698 2095012..2095374 1 NC_009512.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2095374 clpS 5194698 clpS Pseudomonas putida F1 ATP-dependent Clp protease adaptor protein ClpS YP_001267161.1 2095012 D 351746 CDS YP_001267162.1 148547060 5194699 2095405..2097675 1 NC_009512.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2097675 5194699 Pput_1825 Pseudomonas putida F1 ATP-dependent Clp protease ATP-binding protein ClpA YP_001267162.1 2095405 D 351746 CDS YP_001267163.1 148547061 5194526 complement(2097761..2097979) 1 NC_009512.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2097979 infA 5194526 infA Pseudomonas putida F1 translation initiation factor IF-1 YP_001267163.1 2097761 R 351746 CDS YP_001267164.1 148547062 5194527 complement(2098081..2098788) 1 NC_009512.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2098788 5194527 Pput_1827 Pseudomonas putida F1 arginyl-tRNA-protein transferase YP_001267164.1 2098081 R 351746 CDS YP_001267165.1 148547063 5195042 complement(2098845..2099525) 1 NC_009512.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2099525 aat 5195042 aat Pseudomonas putida F1 leucyl/phenylalanyl-tRNA--protein transferase YP_001267165.1 2098845 R 351746 CDS YP_001267166.1 148547064 5195043 2099933..2102428 1 NC_009512.1 PFAM: cell divisionFtsK/SpoIIIE; cell division protein FtsK 2102428 5195043 Pput_1829 Pseudomonas putida F1 cell division protein FtsK YP_001267166.1 2099933 D 351746 CDS YP_001267167.1 148547065 5195298 2102491..2103114 1 NC_009512.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2103114 lolA 5195298 lolA Pseudomonas putida F1 outer-membrane lipoprotein carrier protein YP_001267167.1 2102491 D 351746 CDS YP_001267168.1 148547066 5195299 2103127..2104452 1 NC_009512.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; recombination factor protein RarA 2104452 5195299 Pput_1831 Pseudomonas putida F1 recombination factor protein RarA YP_001267168.1 2103127 D 351746 CDS YP_001267169.1 148547067 5191138 2104449..2104823 1 NC_009512.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2104823 5191138 Pput_1832 Pseudomonas putida F1 camphor resistance protein CrcB YP_001267169.1 2104449 D 351746 CDS YP_001267170.1 148547068 5191139 2104854..2106134 1 NC_009512.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2106134 5191139 Pput_1833 Pseudomonas putida F1 seryl-tRNA synthetase YP_001267170.1 2104854 D 351746 CDS YP_001267171.1 148547069 5193098 2106135..2107526 1 NC_009512.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2107526 5193098 Pput_1834 Pseudomonas putida F1 uroporphyrin-III C-methyltransferase YP_001267171.1 2106135 D 351746 CDS YP_001267172.1 148547070 5193099 complement(2107632..2108591) 1 NC_009512.1 glutathione S-transferase-like protein 2108591 5193099 Pput_1835 Pseudomonas putida F1 glutathione S-transferase-like protein YP_001267172.1 2107632 R 351746 CDS YP_001267173.1 148547071 5192337 complement(2108686..2109687) 1 NC_009512.1 PFAM: glycosyl transferase, family 3; hypothetical protein 2109687 5192337 Pput_1836 Pseudomonas putida F1 hypothetical protein YP_001267173.1 2108686 R 351746 CDS YP_001267174.1 148547072 5192338 complement(2109684..2110019) 1 NC_009512.1 PFAM: DsrC family protein; DsrC family protein 2110019 5192338 Pput_1837 Pseudomonas putida F1 DsrC family protein YP_001267174.1 2109684 R 351746 CDS YP_001267175.1 148547073 5194375 complement(2110016..2110312) 1 NC_009512.1 PFAM: DsrH family protein; DsrH family protein 2110312 5194375 Pput_1838 Pseudomonas putida F1 DsrH family protein YP_001267175.1 2110016 R 351746 CDS YP_001267176.1 148547074 5194376 complement(2110312..2110671) 1 NC_009512.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 2110671 5194376 Pput_1839 Pseudomonas putida F1 sulfur relay protein TusC YP_001267176.1 2110312 R 351746 CDS YP_001267177.1 148547075 5194340 complement(2110673..2111104) 1 NC_009512.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 2111104 5194340 Pput_1840 Pseudomonas putida F1 sulfur transfer complex subunit TusD YP_001267177.1 2110673 R 351746 CDS YP_001267178.1 148547076 5194341 complement(2111161..2112540) 1 NC_009512.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 2112540 5194341 Pput_1841 Pseudomonas putida F1 uracil-xanthine permease YP_001267178.1 2111161 R 351746 CDS YP_001267179.1 148547077 5195015 complement(2112855..2113526) 1 NC_009512.1 PFAM: protein of unknown function UPF0005; hypothetical protein 2113526 5195015 Pput_1842 Pseudomonas putida F1 hypothetical protein YP_001267179.1 2112855 R 351746 CDS YP_001267180.1 148547078 5192720 2114710..2115477 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2115477 5192720 Pput_1844 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001267180.1 2114710 D 351746 CDS YP_001267181.1 148547079 5193960 complement(2115513..2116391) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2116391 5193960 Pput_1845 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267181.1 2115513 R 351746 CDS YP_001267182.1 148547080 5193961 2116570..2117847 1 NC_009512.1 PFAM: ribulose bisphosphate carboxylase, large chain; RuBisCO-like protein 2117847 5193961 Pput_1846 Pseudomonas putida F1 RuBisCO-like protein YP_001267182.1 2116570 D 351746 CDS YP_001267183.1 148547081 5193793 2117851..2119242 1 NC_009512.1 PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer 2119242 5193793 Pput_1847 Pseudomonas putida F1 type III effector Hrp-dependent outer YP_001267183.1 2117851 D 351746 CDS YP_001267184.1 148547082 5193794 2119303..2120646 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2120646 5193794 Pput_1848 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267184.1 2119303 D 351746 CDS YP_001267185.1 148547083 5193406 2120753..2122222 1 NC_009512.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2122222 5193406 Pput_1849 Pseudomonas putida F1 pyruvate kinase YP_001267185.1 2120753 D 351746 CDS YP_001267186.1 148547084 5193407 2122550..2123818 1 NC_009512.1 PFAM: enolase; phosphopyruvate hydratase 2123818 5193407 Pput_1850 Pseudomonas putida F1 phosphopyruvate hydratase YP_001267186.1 2122550 D 351746 CDS YP_001267187.1 148547085 5192721 complement(2125589..2126491) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2126491 5192721 Pput_1852 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267187.1 2125589 R 351746 CDS YP_001267188.1 148547086 5190789 2126622..2127368 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2127368 5190789 Pput_1853 Pseudomonas putida F1 short chain dehydrogenase YP_001267188.1 2126622 D 351746 CDS YP_001267189.1 148547087 5192379 2127472..2128155 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2128155 5192379 Pput_1854 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001267189.1 2127472 D 351746 CDS YP_001267190.1 148547088 5192380 2128175..2128981 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 2128981 5192380 Pput_1855 Pseudomonas putida F1 hypothetical protein YP_001267190.1 2128175 D 351746 CDS YP_001267191.1 148547089 5191494 complement(2129457..2129837) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2129837 5191494 Pput_1857 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267191.1 2129457 R 351746 CDS YP_001267192.1 148547090 5192918 complement(2130002..2130688) 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2130688 5192918 Pput_1858 Pseudomonas putida F1 isochorismatase hydrolase YP_001267192.1 2130002 R 351746 CDS YP_001267193.1 148547091 5190945 2130896..2131357 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2131357 5190945 Pput_1859 Pseudomonas putida F1 endoribonuclease L-PSP YP_001267193.1 2130896 D 351746 CDS YP_001267194.1 148547092 5190946 complement(2131377..2132363) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2132363 5190946 Pput_1860 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267194.1 2131377 R 351746 CDS YP_001267195.1 148547093 5192931 2132654..2132926 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 2132926 5192931 Pput_1861 Pseudomonas putida F1 peptidase YP_001267195.1 2132654 D 351746 CDS YP_001267196.1 148547094 5192932 complement(2133096..2133422) 1 NC_009512.1 hypothetical protein 2133422 5192932 Pput_1862 Pseudomonas putida F1 hypothetical protein YP_001267196.1 2133096 R 351746 CDS YP_001267197.1 148547095 5190623 complement(2133774..2134568) 1 NC_009512.1 PFAM: protein of unknown function DUF1264; hypothetical protein 2134568 5190623 Pput_1863 Pseudomonas putida F1 hypothetical protein YP_001267197.1 2133774 R 351746 CDS YP_001267198.1 148547096 5191495 2135381..2136589 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2136589 5191495 Pput_1865 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267198.1 2135381 D 351746 CDS YP_001267199.1 148547097 5193536 2136746..2137351 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2137351 5193536 Pput_1866 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267199.1 2136746 D 351746 CDS YP_001267200.1 148547098 5193537 complement(2137453..2138814) 1 NC_009512.1 PFAM: Chloride channel, core; chloride channel core protein 2138814 5193537 Pput_1867 Pseudomonas putida F1 chloride channel core protein YP_001267200.1 2137453 R 351746 CDS YP_001267201.1 148547099 5194826 complement(2138951..2140312) 1 NC_009512.1 PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 2140312 5194826 Pput_1868 Pseudomonas putida F1 Na+/H+ antiporter NhaA YP_001267201.1 2138951 R 351746 CDS YP_001267202.1 148547100 5194827 complement(2140860..2142314) 1 NC_009512.1 PFAM: cation transporter; cation transporter 2142314 5194827 Pput_1869 Pseudomonas putida F1 cation transporter YP_001267202.1 2140860 R 351746 CDS YP_001267203.1 148547101 5195549 complement(2142682..2143323) 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2143323 5195549 Pput_1870 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit B YP_001267203.1 2142682 R 351746 CDS YP_001267204.1 148547102 5195550 complement(2143332..2144027) 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2144027 5195550 Pput_1871 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit A YP_001267204.1 2143332 R 351746 CDS YP_001267205.1 148547103 5190532 2144419..2146584 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2146584 5190532 Pput_1872 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001267205.1 2144419 D 351746 CDS YP_001267206.1 148547104 5195447 complement(2147061..2147687) 1 NC_009512.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 2147687 5195447 Pput_1874 Pseudomonas putida F1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001267206.1 2147061 R 351746 CDS YP_001267207.1 148547105 5192151 complement(2147684..2148532) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 2148532 5192151 Pput_1875 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001267207.1 2147684 R 351746 CDS YP_001267208.1 148547106 5192152 complement(2148608..2149333) 1 NC_009512.1 PFAM: Oligogalacturonate-specific porin; oligogalacturonate-specific porin 2149333 5192152 Pput_1876 Pseudomonas putida F1 oligogalacturonate-specific porin YP_001267208.1 2148608 R 351746 CDS YP_001267209.1 148547107 5192758 2149675..2150829 1 NC_009512.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 2150829 5192758 Pput_1877 Pseudomonas putida F1 mandelate racemase/muconate lactonizing protein YP_001267209.1 2149675 D 351746 CDS YP_001267210.1 148547108 5192759 2150899..2152509 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2152509 5192759 Pput_1878 Pseudomonas putida F1 extracellular solute-binding protein YP_001267210.1 2150899 D 351746 CDS YP_001267211.1 148547109 5194854 2152554..2153591 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2153591 5194854 Pput_1879 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267211.1 2152554 D 351746 CDS YP_001267212.1 148547110 5194855 2153640..2155250 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2155250 5194855 Pput_1880 Pseudomonas putida F1 extracellular solute-binding protein YP_001267212.1 2153640 D 351746 CDS YP_001267213.1 148547111 5194502 2155312..2156226 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2156226 5194502 Pput_1881 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267213.1 2155312 D 351746 CDS YP_001267214.1 148547112 5194503 2156238..2157077 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2157077 5194503 Pput_1882 Pseudomonas putida F1 ABC transporter-like protein YP_001267214.1 2156238 D 351746 CDS YP_001267215.1 148547113 5191006 2157089..2157865 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2157865 5191006 Pput_1883 Pseudomonas putida F1 ABC transporter-like protein YP_001267215.1 2157089 D 351746 CDS YP_001267216.1 148547114 5191007 2157894..2159714 1 NC_009512.1 PFAM: glycoside hydrolase, family 28; Fibronectin, type III domain protein; glycoside hydrolase 2159714 5191007 Pput_1884 Pseudomonas putida F1 glycoside hydrolase YP_001267216.1 2157894 D 351746 CDS YP_001267217.1 148547115 5190776 complement(2159699..2160445) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; GntR domain protein; GntR family transcriptional regulator 2160445 5190776 Pput_1885 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267217.1 2159699 R 351746 CDS YP_001267218.1 148547116 5190777 2160542..2161270 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2161270 5190777 Pput_1886 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267218.1 2160542 D 351746 CDS YP_001267219.1 148547117 5193889 complement(2161444..2161782) 1 NC_009512.1 xanthine and Co dehydrogenase maturation factor 2161782 5193889 Pput_1887 Pseudomonas putida F1 xanthine and Co dehydrogenase maturation factor YP_001267219.1 2161444 R 351746 CDS YP_001267220.1 148547118 5193890 2161923..2162561 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2162561 5193890 Pput_1888 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267220.1 2161923 D 351746 CDS YP_001267221.1 148547119 5192809 complement(2162565..2166128) 1 NC_009512.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; cytochrome c, class I; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 2166128 5192809 Pput_1889 Pseudomonas putida F1 aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit YP_001267221.1 2162565 R 351746 CDS YP_001267222.1 148547120 5192810 complement(2166125..2166598) 1 NC_009512.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2166598 5192810 Pput_1890 Pseudomonas putida F1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001267222.1 2166125 R 351746 CDS YP_001267223.1 148547121 5195261 complement(2167036..2167512) 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2167512 5195261 Pput_1891 Pseudomonas putida F1 MarR family transcriptional regulator YP_001267223.1 2167036 R 351746 CDS YP_001267224.1 148547122 5195262 complement(2167583..2168635) 1 NC_009512.1 hypothetical protein 2168635 5195262 Pput_1892 Pseudomonas putida F1 hypothetical protein YP_001267224.1 2167583 R 351746 CDS YP_001267225.1 148547123 5191765 2168958..2170106 1 NC_009512.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; FAD-binding monooxygenase 2170106 5191765 Pput_1893 Pseudomonas putida F1 FAD-binding monooxygenase YP_001267225.1 2168958 D 351746 CDS YP_001267226.1 148547124 5191766 2170103..2170909 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2170909 5191766 Pput_1894 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001267226.1 2170103 D 351746 CDS YP_001267227.1 148547125 5190222 2170923..2171675 1 NC_009512.1 PFAM: Asp/Glu racemase; Asp/Glu racemase 2171675 5190222 Pput_1895 Pseudomonas putida F1 Asp/Glu racemase YP_001267227.1 2170923 D 351746 CDS YP_001267228.1 148547126 5190223 2171691..2172332 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2172332 5190223 Pput_1896 Pseudomonas putida F1 isochorismatase hydrolase YP_001267228.1 2171691 D 351746 CDS YP_001267229.1 148547127 5194049 2172388..2173854 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2173854 5194049 Pput_1897 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267229.1 2172388 D 351746 CDS YP_001267230.1 148547128 5194050 2173993..2175285 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2175285 5194050 Pput_1898 Pseudomonas putida F1 outer membrane porin YP_001267230.1 2173993 D 351746 CDS YP_001267232.1 148547130 5191196 complement(2176490..2177395) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2177395 5191196 Pput_1900 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267232.1 2176490 R 351746 CDS YP_001267233.1 148547131 5191932 2177425..2178255 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 2178255 5191932 Pput_1901 Pseudomonas putida F1 hypothetical protein YP_001267233.1 2177425 D 351746 CDS YP_001267234.1 148547132 5191933 complement(2178257..2179666) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; diguanylate cyclase 2179666 5191933 Pput_1902 Pseudomonas putida F1 diguanylate cyclase YP_001267234.1 2178257 R 351746 CDS YP_001267235.1 148547133 5191008 complement(2179819..2181648) 1 NC_009512.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter 2181648 5191008 Pput_1903 Pseudomonas putida F1 citrate transporter YP_001267235.1 2179819 R 351746 CDS YP_001267236.1 148547134 5191009 complement(2181775..2182167) 1 NC_009512.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 2182167 5191009 Pput_1904 Pseudomonas putida F1 17 kDa surface antigen YP_001267236.1 2181775 R 351746 CDS YP_001267237.1 148547135 5191636 complement(2182241..2182561) 1 NC_009512.1 hypothetical protein 2182561 5191636 Pput_1905 Pseudomonas putida F1 hypothetical protein YP_001267237.1 2182241 R 351746 CDS YP_001267238.1 148547136 5191637 complement(2182616..2182906) 1 NC_009512.1 hypothetical protein 2182906 5191637 Pput_1906 Pseudomonas putida F1 hypothetical protein YP_001267238.1 2182616 R 351746 CDS YP_001267239.1 148547137 5194988 2183024..2183374 1 NC_009512.1 hypothetical protein 2183374 5194988 Pput_1907 Pseudomonas putida F1 hypothetical protein YP_001267239.1 2183024 D 351746 CDS YP_001267240.1 148547138 5194989 2183544..2184365 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 2184365 5194989 Pput_1908 Pseudomonas putida F1 type 12 methyltransferase YP_001267240.1 2183544 D 351746 CDS YP_001267241.1 148547139 5192070 complement(2184366..2185133) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2185133 5192070 Pput_1909 Pseudomonas putida F1 short chain dehydrogenase YP_001267241.1 2184366 R 351746 CDS YP_001267242.1 148547140 5192071 complement(2185170..2186237) 1 NC_009512.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2186237 5192071 Pput_1910 Pseudomonas putida F1 aminoglycoside phosphotransferase YP_001267242.1 2185170 R 351746 CDS YP_001267243.1 148547141 5194807 complement(2186421..2186738) 1 NC_009512.1 PFAM: Sterol-binding domain protein; sterol-binding domain-containing protein 2186738 5194807 Pput_1911 Pseudomonas putida F1 sterol-binding domain-containing protein YP_001267243.1 2186421 R 351746 CDS YP_001267244.1 148547142 5194808 complement(2186795..2187661) 1 NC_009512.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 2187661 5194808 Pput_1912 Pseudomonas putida F1 phosphoglycerate mutase YP_001267244.1 2186795 R 351746 CDS YP_001267245.1 148547143 5193729 2187703..2188722 1 NC_009512.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2188722 5193729 Pput_1913 Pseudomonas putida F1 putative periplasmic protease YP_001267245.1 2187703 D 351746 CDS YP_001267246.1 148547144 5192401 complement(2193244..2193720) 1 NC_009512.1 PFAM: protein of unknown function DUF1003; hypothetical protein 2193720 5192401 Pput_1917 Pseudomonas putida F1 hypothetical protein YP_001267246.1 2193244 R 351746 CDS YP_001267247.1 148547145 5194620 complement(2194395..2194790) 1 NC_009512.1 hypothetical protein 2194790 5194620 Pput_1918 Pseudomonas putida F1 hypothetical protein YP_001267247.1 2194395 R 351746 CDS YP_001267248.1 148547146 5194621 complement(2195197..2195721) 1 NC_009512.1 hypothetical protein 2195721 5194621 Pput_1919 Pseudomonas putida F1 hypothetical protein YP_001267248.1 2195197 R 351746 CDS YP_001267249.1 148547147 5191823 complement(2195696..2196061) 1 NC_009512.1 hypothetical protein 2196061 5191823 Pput_1920 Pseudomonas putida F1 hypothetical protein YP_001267249.1 2195696 R 351746 CDS YP_001267250.1 148547148 5191824 complement(2196143..2196685) 1 NC_009512.1 hypothetical protein 2196685 5191824 Pput_1921 Pseudomonas putida F1 hypothetical protein YP_001267250.1 2196143 R 351746 CDS YP_001267251.1 148547149 5191400 complement(2196682..2197449) 1 NC_009512.1 hypothetical protein 2197449 5191400 Pput_1922 Pseudomonas putida F1 hypothetical protein YP_001267251.1 2196682 R 351746 CDS YP_001267252.1 148547150 5191401 complement(2197446..2198060) 1 NC_009512.1 PFAM: ERF family protein; ERF family protein 2198060 5191401 Pput_1923 Pseudomonas putida F1 ERF family protein YP_001267252.1 2197446 R 351746 CDS YP_001267253.1 148547151 5192372 2199065..2199829 1 NC_009512.1 hypothetical protein 2199829 5192372 Pput_1926 Pseudomonas putida F1 hypothetical protein YP_001267253.1 2199065 D 351746 CDS YP_001267254.1 148547152 5191413 2200357..2200875 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2200875 5191413 Pput_1927 Pseudomonas putida F1 isochorismatase hydrolase YP_001267254.1 2200357 D 351746 CDS YP_001267255.1 148547153 5191819 2201600..2201899 1 NC_009512.1 hypothetical protein 2201899 5191819 Pput_1928 Pseudomonas putida F1 hypothetical protein YP_001267255.1 2201600 D 351746 CDS YP_001267256.1 148547154 5191820 complement(2202027..2203124) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; hypothetical protein 2203124 5191820 Pput_1929 Pseudomonas putida F1 hypothetical protein YP_001267256.1 2202027 R 351746 CDS YP_001267257.1 148547155 5191398 2203197..2203568 1 NC_009512.1 PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 2203568 5191398 Pput_1930 Pseudomonas putida F1 MerR family transcriptional regulator YP_001267257.1 2203197 D 351746 CDS YP_001267258.1 148547156 5191399 complement(2204113..2204319) 1 NC_009512.1 hypothetical protein 2204319 5191399 Pput_1931 Pseudomonas putida F1 hypothetical protein YP_001267258.1 2204113 R 351746 CDS YP_001267259.1 148547157 5191379 complement(2204411..2205421) 1 NC_009512.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 2205421 5191379 Pput_1932 Pseudomonas putida F1 alcohol dehydrogenase YP_001267259.1 2204411 R 351746 CDS YP_001267260.1 148547158 5191380 2205857..2206051 1 NC_009512.1 hypothetical protein 2206051 5191380 Pput_1933 Pseudomonas putida F1 hypothetical protein YP_001267260.1 2205857 D 351746 CDS YP_001267261.1 148547159 5192980 complement(2206053..2206520) 1 NC_009512.1 PFAM: DoxX family protein; DoxX family protein 2206520 5192980 Pput_1934 Pseudomonas putida F1 DoxX family protein YP_001267261.1 2206053 R 351746 CDS YP_001267262.1 148547160 5193460 2207123..2208283 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2208283 5193460 Pput_1935 Pseudomonas putida F1 PAS/PAC sensor signal transduction histidine kinase YP_001267262.1 2207123 D 351746 CDS YP_001267263.1 148547161 5195220 2208289..2209734 1 NC_009512.1 PFAM: KaiA binding; SMART: AAA ATPase; non-specific serine/threonine protein kinase 2209734 5195220 Pput_1936 Pseudomonas putida F1 non-specific serine/threonine protein kinase YP_001267263.1 2208289 D 351746 CDS YP_001267264.1 148547162 5195221 2209746..2210099 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 2210099 5195221 Pput_1937 Pseudomonas putida F1 response regulator receiver protein YP_001267264.1 2209746 D 351746 CDS YP_001267265.1 148547163 5195270 complement(2210139..2210336) 1 NC_009512.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2210336 5195270 Pput_1938 Pseudomonas putida F1 carbon storage regulator YP_001267265.1 2210139 R 351746 CDS YP_001267266.1 148547164 5195271 complement(2210590..2211612) 1 NC_009512.1 DNA topoisomerase 2211612 5195271 Pput_1939 Pseudomonas putida F1 DNA topoisomerase YP_001267266.1 2210590 R 351746 CDS YP_001267267.1 148547165 5192838 complement(2211670..2212761) 1 NC_009512.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 2212761 5192838 Pput_1940 Pseudomonas putida F1 molybdate ABC transporter ATPase YP_001267267.1 2211670 R 351746 CDS YP_001267268.1 148547166 5192839 complement(2212763..2213443) 1 NC_009512.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 2213443 5192839 Pput_1941 Pseudomonas putida F1 molybdate ABC transporter inner membrane subunit YP_001267268.1 2212763 R 351746 CDS YP_001267269.1 148547167 5193490 complement(2213443..2214201) 1 NC_009512.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 2214201 5193490 Pput_1942 Pseudomonas putida F1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001267269.1 2213443 R 351746 CDS YP_001267270.1 148547168 5193491 complement(2214284..2215369) 1 NC_009512.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2215369 5193491 Pput_1943 Pseudomonas putida F1 2-nitropropane dioxygenase YP_001267270.1 2214284 R 351746 CDS YP_001267271.1 148547169 5194662 complement(2215422..2215592) 1 NC_009512.1 hypothetical protein 2215592 5194662 Pput_1944 Pseudomonas putida F1 hypothetical protein YP_001267271.1 2215422 R 351746 CDS YP_001267272.1 148547170 5194663 complement(2215600..2215902) 1 NC_009512.1 PFAM: Domain of unknown function DUF1883; hypothetical protein 2215902 5194663 Pput_1945 Pseudomonas putida F1 hypothetical protein YP_001267272.1 2215600 R 351746 CDS YP_001267273.1 148547171 5191837 2216062..2216421 1 NC_009512.1 hypothetical protein 2216421 5191837 Pput_1946 Pseudomonas putida F1 hypothetical protein YP_001267273.1 2216062 D 351746 CDS YP_001267274.1 148547172 5191838 2216499..2217149 1 NC_009512.1 PFAM: cytochrome c, class I; cytochrome c, class I 2217149 5191838 Pput_1947 Pseudomonas putida F1 cytochrome c, class I YP_001267274.1 2216499 D 351746 CDS YP_001267275.1 148547173 5191418 2217146..2218060 1 NC_009512.1 PFAM: cytochrome c, class I; cytochrome c, class I 2218060 5191418 Pput_1948 Pseudomonas putida F1 cytochrome c, class I YP_001267275.1 2217146 D 351746 CDS YP_001267276.1 148547174 5191419 2218297..2219136 1 NC_009512.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2219136 5191419 Pput_1949 Pseudomonas putida F1 UTP-glucose-1-phosphate uridylyltransferase YP_001267276.1 2218297 D 351746 CDS YP_001267277.1 148547175 5191897 2219234..2220589 1 NC_009512.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 2220589 5191897 Pput_1950 Pseudomonas putida F1 glutathione reductase YP_001267277.1 2219234 D 351746 CDS YP_001267278.1 148547176 5191898 complement(2220724..2222031) 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2222031 5191898 Pput_1951 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001267278.1 2220724 R 351746 CDS YP_001267279.1 148547177 5192784 complement(2222187..2223335) 1 NC_009512.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2223335 5192784 Pput_1952 Pseudomonas putida F1 ABC transporter-like protein YP_001267279.1 2222187 R 351746 CDS YP_001267280.1 148547178 5192785 complement(2223353..2224159) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2224159 5192785 Pput_1953 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267280.1 2223353 R 351746 CDS YP_001267281.1 148547179 5192927 complement(2224166..2225083) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2225083 5192927 Pput_1954 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267281.1 2224166 R 351746 CDS YP_001267282.1 148547180 5192928 complement(2225080..2226105) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2226105 5192928 Pput_1955 Pseudomonas putida F1 extracellular solute-binding protein YP_001267282.1 2225080 R 351746 CDS YP_001267283.1 148547181 5193000 complement(2226436..2227557) 1 NC_009512.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2227557 5193000 Pput_1956 Pseudomonas putida F1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001267283.1 2226436 R 351746 CDS YP_001267284.1 148547182 5193001 2227636..2227929 1 NC_009512.1 PFAM: protein of unknown function DUF1330; hypothetical protein 2227929 5193001 Pput_1957 Pseudomonas putida F1 hypothetical protein YP_001267284.1 2227636 D 351746 CDS YP_001267285.1 148547183 5193326 complement(2228134..2229153) 1 NC_009512.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 2229153 5193326 Pput_1958 Pseudomonas putida F1 alpha/beta hydrolase domain-containing protein YP_001267285.1 2228134 R 351746 CDS YP_001267286.1 148547184 5193327 2229243..2230184 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2230184 5193327 Pput_1959 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267286.1 2229243 D 351746 CDS YP_001267287.1 148547185 5191620 2230211..2230612 1 NC_009512.1 hypothetical protein 2230612 5191620 Pput_1960 Pseudomonas putida F1 hypothetical protein YP_001267287.1 2230211 D 351746 CDS YP_001267288.1 148547186 5191621 2230747..2230968 1 NC_009512.1 PFAM: MbtH domain protein; MbtH domain-containing protein 2230968 5191621 Pput_1961 Pseudomonas putida F1 MbtH domain-containing protein YP_001267288.1 2230747 D 351746 CDS YP_001267289.1 148547187 5191833 2230965..2231684 1 NC_009512.1 PFAM: Thioesterase; thioesterase 2231684 5191833 Pput_1962 Pseudomonas putida F1 thioesterase YP_001267289.1 2230965 D 351746 CDS YP_001267290.1 148547188 5191834 2231742..2232293 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2232293 5191834 Pput_1963 Pseudomonas putida F1 isochorismatase hydrolase YP_001267290.1 2231742 D 351746 CDS YP_001267291.1 148547189 5191950 2232320..2233372 1 NC_009512.1 PFAM: protein of unknown function DUF1615; hypothetical protein 2233372 5191950 Pput_1964 Pseudomonas putida F1 hypothetical protein YP_001267291.1 2232320 D 351746 CDS YP_001267292.1 148547190 5191951 complement(2233597..2234460) 1 NC_009512.1 hypothetical protein 2234460 5191951 Pput_1965 Pseudomonas putida F1 hypothetical protein YP_001267292.1 2233597 R 351746 CDS YP_001267293.1 148547191 5193075 complement(2234457..2235356) 1 NC_009512.1 PFAM: ABC-3 protein; ABC-3 protein 2235356 5193075 Pput_1966 Pseudomonas putida F1 ABC-3 protein YP_001267293.1 2234457 R 351746 CDS YP_001267294.1 148547192 5193076 complement(2235356..2236102) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2236102 5193076 Pput_1967 Pseudomonas putida F1 ABC transporter-like protein YP_001267294.1 2235356 R 351746 CDS YP_001267295.1 148547193 5194071 complement(2236099..2237001) 1 NC_009512.1 PFAM: periplasmic solute binding protein; periplasmic solute binding protein 2237001 5194071 Pput_1968 Pseudomonas putida F1 periplasmic solute binding protein YP_001267295.1 2236099 R 351746 CDS YP_001267296.1 148547194 5194072 complement(2237018..2237587) 1 NC_009512.1 hypothetical protein 2237587 5194072 Pput_1969 Pseudomonas putida F1 hypothetical protein YP_001267296.1 2237018 R 351746 CDS YP_001267297.1 148547195 5193336 complement(2237584..2237904) 1 NC_009512.1 hypothetical protein 2237904 5193336 Pput_1970 Pseudomonas putida F1 hypothetical protein YP_001267297.1 2237584 R 351746 CDS YP_001267298.1 148547196 5193337 complement(2237901..2238440) 1 NC_009512.1 hypothetical protein 2238440 5193337 Pput_1971 Pseudomonas putida F1 hypothetical protein YP_001267298.1 2237901 R 351746 CDS YP_001267299.1 148547197 5191462 complement(2238437..2239630) 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase 2239630 5191462 Pput_1972 Pseudomonas putida F1 peptidase YP_001267299.1 2238437 R 351746 CDS YP_001267300.1 148547198 5191463 complement(2239808..2241142) 1 NC_009512.1 lysine/ornithine N-monooxygenase-like protein 2241142 5191463 Pput_1973 Pseudomonas putida F1 lysine/ornithine N-monooxygenase-like protein YP_001267300.1 2239808 R 351746 CDS YP_001267301.1 148547199 5191807 2241317..2241763 1 NC_009512.1 hypothetical protein 2241763 5191807 Pput_1974 Pseudomonas putida F1 hypothetical protein YP_001267301.1 2241317 D 351746 CDS YP_001267302.1 148547200 5190202 complement(2242180..2243106) 1 NC_009512.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2243106 pbpG 5190202 pbpG Pseudomonas putida F1 D-alanyl-D-alanine endopeptidase YP_001267302.1 2242180 R 351746 CDS YP_001267303.1 148547201 5190203 2243393..2244109 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 2244109 5190203 Pput_1978 Pseudomonas putida F1 phage integrase family protein YP_001267303.1 2243393 D 351746 CDS YP_001267304.1 148547202 5195572 complement(2244200..2245156) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2245156 5195572 Pput_1979 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267304.1 2244200 R 351746 CDS YP_001267305.1 148547203 5192972 2245198..2245629 1 NC_009512.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 2245629 5192972 Pput_1980 Pseudomonas putida F1 glutathione-dependent formaldehyde-activating protein YP_001267305.1 2245198 D 351746 CDS YP_001267306.1 148547204 5192973 2246162..2247145 1 NC_009512.1 PFAM: luciferase family protein; luciferase family protein 2247145 5192973 Pput_1981 Pseudomonas putida F1 luciferase family protein YP_001267306.1 2246162 D 351746 CDS YP_001267307.1 148547205 5193743 complement(2247561..2247863) 1 NC_009512.1 hypothetical protein 2247863 5193743 Pput_1983 Pseudomonas putida F1 hypothetical protein YP_001267307.1 2247561 R 351746 CDS YP_001267308.1 148547206 5191852 complement(2248092..2249192) 1 NC_009512.1 PFAM: low temperature requirement A; low temperature requirement A 2249192 5191852 Pput_1984 Pseudomonas putida F1 low temperature requirement A YP_001267308.1 2248092 R 351746 CDS YP_001267309.1 148547207 5193372 complement(2249291..2249830) 1 NC_009512.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 2249830 5193372 Pput_1985 Pseudomonas putida F1 DSBA oxidoreductase YP_001267309.1 2249291 R 351746 CDS YP_001267310.1 148547208 5193373 complement(2249842..2250384) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 2250384 5193373 Pput_1986 Pseudomonas putida F1 alkyl hydroperoxide reductase YP_001267310.1 2249842 R 351746 CDS YP_001267311.1 148547209 5194161 complement(2251294..2252460) 1 NC_009512.1 PFAM: aminotransferase, class I and II; GntR family transcriptional regulator 2252460 5194161 Pput_1987 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267311.1 2251294 R 351746 CDS YP_001267312.1 148547210 5194162 2252541..2252984 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2252984 5194162 Pput_1988 Pseudomonas putida F1 MarR family transcriptional regulator YP_001267312.1 2252541 D 351746 CDS YP_001267313.1 148547211 5193082 complement(2253845..2254519) 1 NC_009512.1 PFAM: Alginate lyase 2; alginate lyase 2 2254519 5193082 Pput_1989 Pseudomonas putida F1 alginate lyase 2 YP_001267313.1 2253845 R 351746 CDS YP_001267314.1 148547212 5193083 2254754..2255077 1 NC_009512.1 PFAM: protein of unknown function DUF1654; hypothetical protein 2255077 5193083 Pput_1990 Pseudomonas putida F1 hypothetical protein YP_001267314.1 2254754 D 351746 CDS YP_001267315.1 148547213 5193094 complement(2255116..2255985) 1 NC_009512.1 PFAM: peptidase S24, S26A and S26B; putative phage repressor 2255985 5193094 Pput_1991 Pseudomonas putida F1 putative phage repressor YP_001267315.1 2255116 R 351746 CDS YP_001267316.1 148547214 5193095 2256105..2256419 1 NC_009512.1 hypothetical protein 2256419 5193095 Pput_1992 Pseudomonas putida F1 hypothetical protein YP_001267316.1 2256105 D 351746 CDS YP_001267317.1 148547215 5194285 complement(2256509..2256691) 1 NC_009512.1 hypothetical protein 2256691 5194285 Pput_1993 Pseudomonas putida F1 hypothetical protein YP_001267317.1 2256509 R 351746 CDS YP_001267318.1 148547216 5194286 complement(2256786..2257139) 1 NC_009512.1 hypothetical protein 2257139 5194286 Pput_1994 Pseudomonas putida F1 hypothetical protein YP_001267318.1 2256786 R 351746 CDS YP_001267319.1 148547217 5194269 2257301..2258122 1 NC_009512.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2258122 5194269 Pput_1995 Pseudomonas putida F1 shikimate 5-dehydrogenase YP_001267319.1 2257301 D 351746 CDS YP_001267320.1 148547218 5194270 complement(2258179..2258421) 1 NC_009512.1 hypothetical protein 2258421 5194270 Pput_1996 Pseudomonas putida F1 hypothetical protein YP_001267320.1 2258179 R 351746 CDS YP_001267321.1 148547219 5194789 complement(2258519..2259046) 1 NC_009512.1 TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2259046 5194789 Pput_1997 Pseudomonas putida F1 lactoylglutathione lyase YP_001267321.1 2258519 R 351746 CDS YP_001267322.1 148547220 5194790 complement(2259271..2259675) 1 NC_009512.1 hypothetical protein 2259675 5194790 Pput_1998 Pseudomonas putida F1 hypothetical protein YP_001267322.1 2259271 R 351746 CDS YP_001267323.1 148547221 5195183 2259992..2261281 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2261281 5195183 Pput_1999 Pseudomonas putida F1 outer membrane porin YP_001267323.1 2259992 D 351746 CDS YP_001267324.1 148547222 5195184 2261349..2262098 1 NC_009512.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2262098 5195184 Pput_2000 Pseudomonas putida F1 precorrin 6A synthase YP_001267324.1 2261349 D 351746 CDS YP_001267325.1 148547223 5195292 complement(2262168..2262518) 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 2262518 5195292 Pput_2001 Pseudomonas putida F1 response regulator receiver protein YP_001267325.1 2262168 R 351746 CDS YP_001267326.1 148547224 5195293 2262767..2266234 1 NC_009512.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; multi-sensor hybrid histidine kinase 2266234 5195293 Pput_2002 Pseudomonas putida F1 multi-sensor hybrid histidine kinase YP_001267326.1 2262767 D 351746 CDS YP_001267327.1 148547225 5192625 2266231..2267052 1 NC_009512.1 PFAM: MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 2267052 5192625 Pput_2003 Pseudomonas putida F1 CheR-type MCP methyltransferase YP_001267327.1 2266231 D 351746 CDS YP_001267328.1 148547226 5192626 2267049..2267624 1 NC_009512.1 PFAM: CheB methylesterase; CheB methylesterase 2267624 5192626 Pput_2004 Pseudomonas putida F1 CheB methylesterase YP_001267328.1 2267049 D 351746 CDS YP_001267329.1 148547227 5193629 2267618..2268844 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; response regulator receiver sensor signal transduction histidine kinase 2268844 5193629 Pput_2005 Pseudomonas putida F1 response regulator receiver sensor signal transduction histidine kinase YP_001267329.1 2267618 D 351746 CDS YP_001267330.1 148547228 5193630 2268889..2269266 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 2269266 5193630 Pput_2006 Pseudomonas putida F1 response regulator receiver protein YP_001267330.1 2268889 D 351746 CDS YP_001267331.1 148547229 5193885 complement(2269315..2269896) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2269896 5193885 Pput_2007 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267331.1 2269315 R 351746 CDS YP_001267332.1 148547230 5193886 complement(2269909..2270757) 1 NC_009512.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA dehydrogenase 2270757 5193886 Pput_2008 Pseudomonas putida F1 3-hydroxybutyryl-CoA dehydrogenase YP_001267332.1 2269909 R 351746 CDS YP_001267333.1 148547231 5193874 complement(2270771..2271955) 1 NC_009512.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2271955 5193874 Pput_2009 Pseudomonas putida F1 beta-ketothiolase YP_001267333.1 2270771 R 351746 CDS YP_001267334.1 148547232 5193875 2272124..2273212 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2273212 5193875 Pput_2010 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267334.1 2272124 D 351746 CDS YP_001267335.1 148547233 5190900 complement(2273491..2273928) 1 NC_009512.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 2273928 5190900 Pput_2011 Pseudomonas putida F1 alkylhydroperoxidase YP_001267335.1 2273491 R 351746 CDS YP_001267336.1 148547234 5190901 2274129..2275325 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2275325 5190901 Pput_2012 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267336.1 2274129 D 351746 CDS YP_001267337.1 148547235 5193992 complement(2275318..2276814) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2276814 5193992 Pput_2013 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267337.1 2275318 R 351746 CDS YP_001267338.1 148547236 5193993 complement(2276842..2277180) 1 NC_009512.1 hypothetical protein 2277180 5193993 Pput_2014 Pseudomonas putida F1 hypothetical protein YP_001267338.1 2276842 R 351746 CDS YP_001267339.1 148547237 5193165 complement(2277320..2277718) 1 NC_009512.1 PFAM: protein of unknown function DUF336; hypothetical protein 2277718 5193165 Pput_2015 Pseudomonas putida F1 hypothetical protein YP_001267339.1 2277320 R 351746 CDS YP_001267340.1 148547238 5193166 complement(2277711..2278946) 1 NC_009512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit 2278946 glcF 5193166 glcF Pseudomonas putida F1 glycolate oxidase iron-sulfur subunit YP_001267340.1 2277711 R 351746 CDS YP_001267341.1 148547239 5191789 complement(2278956..2280008) 1 NC_009512.1 PFAM: FAD linked oxidase domain protein; glycolate oxidase FAD binding subunit 2280008 glcE 5191789 glcE Pseudomonas putida F1 glycolate oxidase FAD binding subunit YP_001267341.1 2278956 R 351746 CDS YP_001267342.1 148547240 5191790 complement(2280008..2281507) 1 NC_009512.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; glycolate oxidase subunit GlcD 2281507 5191790 Pput_2018 Pseudomonas putida F1 glycolate oxidase subunit GlcD YP_001267342.1 2280008 R 351746 CDS YP_001267343.1 148547241 5194477 2281702..2282466 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; DNA-binding transcriptional regulator GlcC 2282466 5194477 Pput_2019 Pseudomonas putida F1 DNA-binding transcriptional regulator GlcC YP_001267343.1 2281702 D 351746 CDS YP_001267344.1 148547242 5194478 complement(2282527..2282844) 1 NC_009512.1 TIGRFAM: conserverd hypothetical protein; hypothetical protein 2282844 5194478 Pput_2020 Pseudomonas putida F1 hypothetical protein YP_001267344.1 2282527 R 351746 CDS YP_001267345.1 148547243 5190970 2283125..2283751 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2283751 5190970 Pput_2021 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001267345.1 2283125 D 351746 CDS YP_001267346.1 148547244 5190971 complement(2283794..2285797) 1 NC_009512.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 2285797 5190971 Pput_2022 Pseudomonas putida F1 peptidoglycan glycosyltransferase YP_001267346.1 2283794 R 351746 CDS YP_001267347.1 148547245 5190450 2286252..2287592 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2287592 5190450 Pput_2023 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267347.1 2286252 D 351746 CDS YP_001267348.1 148547246 5190451 2287695..2288948 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2288948 5190451 Pput_2024 Pseudomonas putida F1 outer membrane porin YP_001267348.1 2287695 D 351746 CDS YP_001267349.1 148547247 5195174 2289342..2290076 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2290076 5195174 Pput_2025 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267349.1 2289342 D 351746 CDS YP_001267350.1 148547248 5195175 complement(2290083..2291033) 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin 2291033 5195175 Pput_2026 Pseudomonas putida F1 ferredoxin YP_001267350.1 2290083 R 351746 CDS YP_001267351.1 148547249 5193815 complement(2291046..2292113) 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 2292113 5193815 Pput_2027 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001267351.1 2291046 R 351746 CDS YP_001267352.1 148547250 5193816 2292395..2293060 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2293060 5193816 Pput_2028 Pseudomonas putida F1 ABC transporter-like protein YP_001267352.1 2292395 D 351746 CDS YP_001267353.1 148547251 5190659 2293060..2295519 1 NC_009512.1 PFAM: protein of unknown function DUF214; hypothetical protein 2295519 5190659 Pput_2029 Pseudomonas putida F1 hypothetical protein YP_001267353.1 2293060 D 351746 CDS YP_001267354.1 148547252 5190660 2295509..2296564 1 NC_009512.1 secreted hydrolase-like protein 2296564 5190660 Pput_2030 Pseudomonas putida F1 secreted hydrolase-like protein YP_001267354.1 2295509 D 351746 CDS YP_001267355.1 148547253 5193958 complement(2296618..2297364) 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2297364 5193958 Pput_2031 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001267355.1 2296618 R 351746 CDS YP_001267356.1 148547254 5193959 2297481..2298125 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2298125 5193959 Pput_2032 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267356.1 2297481 D 351746 CDS YP_001267357.1 148547255 5192877 2298199..2298915 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2298915 5192877 Pput_2033 Pseudomonas putida F1 two component transcriptional regulator YP_001267357.1 2298199 D 351746 CDS YP_001267358.1 148547256 5192878 2298912..2299694 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2299694 5192878 Pput_2034 Pseudomonas putida F1 extracellular solute-binding protein YP_001267358.1 2298912 D 351746 CDS YP_001267359.1 148547257 5190363 2299691..2301943 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 2301943 5190363 Pput_2035 Pseudomonas putida F1 multi-sensor hybrid histidine kinase YP_001267359.1 2299691 D 351746 CDS YP_001267360.1 148547258 5190364 2302140..2303546 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 2303546 5190364 Pput_2036 Pseudomonas putida F1 amino acid permease-associated protein YP_001267360.1 2302140 D 351746 CDS YP_001267361.1 148547259 5195050 2303785..2304579 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2304579 5195050 Pput_2037 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001267361.1 2303785 D 351746 CDS YP_001267362.1 148547260 5195051 2304613..2305773 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2305773 5195051 Pput_2038 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267362.1 2304613 D 351746 CDS YP_001267363.1 148547261 5193187 2305791..2307908 1 NC_009512.1 PFAM: CoA-binding domain protein; CoA-binding domain-containing protein 2307908 5193187 Pput_2039 Pseudomonas putida F1 CoA-binding domain-containing protein YP_001267363.1 2305791 D 351746 CDS YP_001267364.1 148547262 5193188 2307901..2309508 1 NC_009512.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; hypothetical protein 2309508 5193188 Pput_2040 Pseudomonas putida F1 hypothetical protein YP_001267364.1 2307901 D 351746 CDS YP_001267365.1 148547263 5191531 2309543..2310772 1 NC_009512.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2310772 alr 5191531 alr Pseudomonas putida F1 alanine racemase YP_001267365.1 2309543 D 351746 CDS YP_001267366.1 148547264 5191532 2310797..2311987 1 NC_009512.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; class I and II aminotransferase 2311987 5191532 Pput_2042 Pseudomonas putida F1 class I and II aminotransferase YP_001267366.1 2310797 D 351746 CDS YP_001267367.1 148547265 5191795 2311980..2313392 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2313392 5191795 Pput_2043 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267367.1 2311980 D 351746 CDS YP_001267368.1 148547266 5191796 2313430..2314137 1 NC_009512.1 PFAM: NAD(P)H dehydrogenase (quinone); ribosyldihydronicotinamide dehydrogenase 2314137 5191796 Pput_2044 Pseudomonas putida F1 ribosyldihydronicotinamide dehydrogenase YP_001267368.1 2313430 D 351746 CDS YP_001267369.1 148547267 5195023 2314674..2315777 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2315777 5195023 Pput_2045 Pseudomonas putida F1 extracellular solute-binding protein YP_001267369.1 2314674 D 351746 CDS YP_001267370.1 148547268 5195024 2315812..2317224 1 NC_009512.1 PFAM: aminotransferase class-III; hypothetical protein 2317224 5195024 Pput_2046 Pseudomonas putida F1 hypothetical protein YP_001267370.1 2315812 D 351746 CDS YP_001267371.1 148547269 5193436 2317221..2318126 1 NC_009512.1 PFAM: regulatory protein, LuxR; LuxR family transcriptional regulator 2318126 5193436 Pput_2047 Pseudomonas putida F1 LuxR family transcriptional regulator YP_001267371.1 2317221 D 351746 CDS YP_001267372.1 148547270 5193437 2318280..2319512 1 NC_009512.1 PFAM: Ethanolamine utilisation protein, EutH; ethanolamine utilisation protein, EutH 2319512 5193437 Pput_2048 Pseudomonas putida F1 ethanolamine utilisation protein, EutH YP_001267372.1 2318280 D 351746 CDS YP_001267373.1 148547271 5190607 2319628..2320425 1 NC_009512.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; response regulator receiver protein 2320425 5190607 Pput_2049 Pseudomonas putida F1 response regulator receiver protein YP_001267373.1 2319628 D 351746 CDS YP_001267374.1 148547272 5190608 complement(2320472..2321791) 1 NC_009512.1 TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; FAD-linked oxidoreductase 2321791 5190608 Pput_2050 Pseudomonas putida F1 FAD-linked oxidoreductase YP_001267374.1 2320472 R 351746 CDS YP_001267375.1 148547273 5195044 complement(2321772..2322539) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2322539 5195044 Pput_2051 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001267375.1 2321772 R 351746 CDS YP_001267376.1 148547274 5195045 complement(2322785..2323687) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2323687 5195045 Pput_2052 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267376.1 2322785 R 351746 CDS YP_001267377.1 148547275 5192766 2323793..2324914 1 NC_009512.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerase 2324914 5192766 Pput_2053 Pseudomonas putida F1 muconate and chloromuconate cycloisomerase YP_001267377.1 2323793 D 351746 CDS YP_001267378.1 148547276 5192767 2324932..2325222 1 NC_009512.1 PFAM: Muconolactone delta-isomerase; muconolactone Delta-isomerase 2325222 5192767 Pput_2054 Pseudomonas putida F1 muconolactone Delta-isomerase YP_001267378.1 2324932 D 351746 CDS YP_001267379.1 148547277 5191661 2325266..2326201 1 NC_009512.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; catechol 1,2-dioxygenase 2326201 5191661 Pput_2055 Pseudomonas putida F1 catechol 1,2-dioxygenase YP_001267379.1 2325266 D 351746 CDS YP_001267380.1 148547278 5191662 2326319..2326813 1 NC_009512.1 hypothetical protein 2326813 5191662 Pput_2056 Pseudomonas putida F1 hypothetical protein YP_001267380.1 2326319 D 351746 CDS YP_001267381.1 148547279 5190448 2326974..2329073 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 2329073 5190448 Pput_2057 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001267381.1 2326974 D 351746 CDS YP_001267382.1 148547280 5190449 complement(2329088..2329912) 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 2329912 5190449 Pput_2058 Pseudomonas putida F1 aldo/keto reductase YP_001267382.1 2329088 R 351746 CDS YP_001267383.1 148547281 5195076 2330100..2331035 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2331035 5195076 Pput_2059 Pseudomonas putida F1 hypothetical protein YP_001267383.1 2330100 D 351746 CDS YP_001267384.1 148547282 5195077 complement(2331095..2332000) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2332000 5195077 Pput_2060 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267384.1 2331095 R 351746 CDS YP_001267385.1 148547283 5195062 2332387..2334642 1 NC_009512.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2334642 5195062 Pput_2061 Pseudomonas putida F1 catalase/peroxidase HPI YP_001267385.1 2332387 D 351746 CDS YP_001267386.1 148547284 5195063 2334802..2336013 1 NC_009512.1 PFAM: creatinase; peptidase M24; creatinase 2336013 5195063 Pput_2062 Pseudomonas putida F1 creatinase YP_001267386.1 2334802 D 351746 CDS YP_001267387.1 148547285 5192424 2336176..2337510 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2337510 5192424 Pput_2063 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267387.1 2336176 D 351746 CDS YP_001267388.1 148547286 5192425 complement(2337635..2338642) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 2338642 5192425 Pput_2064 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267388.1 2337635 R 351746 CDS YP_001267389.1 148547287 5190189 2338839..2340152 1 NC_009512.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2340152 pssA 5190189 pssA Pseudomonas putida F1 phosphatidylserine synthase YP_001267389.1 2338839 D 351746 CDS YP_001267390.1 148547288 5190190 2340272..2341531 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2341531 5190190 Pput_2066 Pseudomonas putida F1 diguanylate cyclase YP_001267390.1 2340272 D 351746 CDS YP_001267391.1 148547289 5193978 complement(2341652..2343025) 1 NC_009512.1 PFAM: conserved hypothetical protein 730; hypothetical protein 2343025 5193978 Pput_2067 Pseudomonas putida F1 hypothetical protein YP_001267391.1 2341652 R 351746 CDS YP_001267392.1 148547290 5193979 complement(2343239..2344300) 1 NC_009512.1 PFAM: conserved hypothetical protein 698; hypothetical protein 2344300 5193979 Pput_2068 Pseudomonas putida F1 hypothetical protein YP_001267392.1 2343239 R 351746 CDS YP_001267393.1 148547291 5190756 2344413..2345300 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2345300 5190756 Pput_2069 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267393.1 2344413 D 351746 CDS YP_001267394.1 148547292 5190757 complement(2345518..2345973) 1 NC_009512.1 PFAM: MaoC domain protein dehydratase; dehydratase 2345973 5190757 Pput_2070 Pseudomonas putida F1 dehydratase YP_001267394.1 2345518 R 351746 CDS YP_001267395.1 148547293 5195532 2346205..2347230 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2347230 5195532 Pput_2071 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267395.1 2346205 D 351746 CDS YP_001267396.1 148547294 5195533 2347501..2348853 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2348853 5195533 Pput_2072 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267396.1 2347501 D 351746 CDS YP_001267397.1 148547295 5194738 2348882..2349610 1 NC_009512.1 PFAM: nitroreductase; nitroreductase 2349610 5194738 Pput_2073 Pseudomonas putida F1 nitroreductase YP_001267397.1 2348882 D 351746 CDS YP_001267398.1 148547296 5194739 2349772..2351034 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2351034 5194739 Pput_2074 Pseudomonas putida F1 outer membrane porin YP_001267398.1 2349772 D 351746 CDS YP_001267399.1 148547297 5194243 complement(2351185..2352597) 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2352597 5194243 Pput_2075 Pseudomonas putida F1 cytosine/purines uracil thiamine allantoin permease YP_001267399.1 2351185 R 351746 CDS YP_001267400.1 148547298 5194244 complement(2352976..2353428) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2353428 5194244 Pput_2076 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001267400.1 2352976 R 351746 CDS YP_001267401.1 148547299 5192347 2353540..2354154 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2354154 5192347 Pput_2077 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267401.1 2353540 D 351746 CDS YP_001267402.1 148547300 5192348 2354212..2354853 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2354853 5192348 Pput_2078 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267402.1 2354212 D 351746 CDS YP_001267403.1 148547301 5193226 complement(2354876..2357059) 1 NC_009512.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; GAF sensor hybrid histidine kinase 2357059 5193226 Pput_2079 Pseudomonas putida F1 GAF sensor hybrid histidine kinase YP_001267403.1 2354876 R 351746 CDS YP_001267404.1 148547302 5193227 complement(2357211..2357774) 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2357774 5193227 Pput_2080 Pseudomonas putida F1 NUDIX hydrolase YP_001267404.1 2357211 R 351746 CDS YP_001267405.1 148547303 5194998 complement(2357777..2358529) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2358529 5194998 Pput_2081 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267405.1 2357777 R 351746 CDS YP_001267406.1 148547304 5194999 complement(2358618..2359007) 1 NC_009512.1 PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2359007 5194999 Pput_2082 Pseudomonas putida F1 carboxymuconolactone decarboxylase YP_001267406.1 2358618 R 351746 CDS YP_001267407.1 148547305 5190479 complement(2359194..2359679) 1 NC_009512.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 2359679 5190479 Pput_2083 Pseudomonas putida F1 flavin reductase domain-containing protein YP_001267407.1 2359194 R 351746 CDS YP_001267408.1 148547306 5190480 complement(2359692..2361173) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2361173 5190480 Pput_2084 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267408.1 2359692 R 351746 CDS YP_001267409.1 148547307 5194249 complement(2361170..2362003) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; alpha/beta hydrolase fold family protein 2362003 5194249 Pput_2085 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001267409.1 2361170 R 351746 CDS YP_001267410.1 148547308 5194250 complement(2362072..2362668) 1 NC_009512.1 PFAM: protein of unknown function DUF1185; hypothetical protein 2362668 5194250 Pput_2086 Pseudomonas putida F1 hypothetical protein YP_001267410.1 2362072 R 351746 CDS YP_001267411.1 148547309 5192728 complement(2362933..2363973) 1 NC_009512.1 PFAM: luciferase family protein; luciferase family protein 2363973 5192728 Pput_2087 Pseudomonas putida F1 luciferase family protein YP_001267411.1 2362933 R 351746 CDS YP_001267412.1 148547310 5192729 complement(2364054..2364539) 1 NC_009512.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 2364539 5192729 Pput_2088 Pseudomonas putida F1 flavin reductase domain-containing protein YP_001267412.1 2364054 R 351746 CDS YP_001267413.1 148547311 5193744 2364856..2366262 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2366262 5193744 Pput_2090 Pseudomonas putida F1 cytosine/purines uracil thiamine allantoin permease YP_001267413.1 2364856 D 351746 CDS YP_001267414.1 148547312 5191050 complement(2366315..2367940) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2367940 5191050 Pput_2091 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001267414.1 2366315 R 351746 CDS YP_001267415.1 148547313 5192484 complement(2368171..2369379) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2369379 5192484 Pput_2092 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001267415.1 2368171 R 351746 CDS YP_001267416.1 148547314 5192485 complement(2369321..2370232) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2370232 5192485 Pput_2093 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267416.1 2369321 R 351746 CDS YP_001267417.1 148547315 5193387 2370335..2370895 1 NC_009512.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 2370895 5193387 Pput_2094 Pseudomonas putida F1 alkylhydroperoxidase YP_001267417.1 2370335 D 351746 CDS YP_001267418.1 148547316 5193388 2370994..2372058 1 NC_009512.1 Acyl-CoA dehydrogenase-like protein 2372058 5193388 Pput_2095 Pseudomonas putida F1 Acyl-CoA dehydrogenase-like protein YP_001267418.1 2370994 D 351746 CDS YP_001267419.1 148547317 5193197 2372055..2372876 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2372876 5193197 Pput_2096 Pseudomonas putida F1 ABC transporter-like protein YP_001267419.1 2372055 D 351746 CDS YP_001267420.1 148547318 5193198 2372863..2374068 1 NC_009512.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 2374068 5193198 Pput_2097 Pseudomonas putida F1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001267420.1 2372863 D 351746 CDS YP_001267421.1 148547319 5195120 2374068..2374823 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2374823 5195120 Pput_2098 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267421.1 2374068 D 351746 CDS YP_001267422.1 148547320 5195121 complement(2374935..2375621) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2375621 5195121 Pput_2099 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267422.1 2374935 R 351746 CDS YP_001267423.1 148547321 5191316 complement(2375697..2376638) 1 NC_009512.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 2376638 5191316 Pput_2100 Pseudomonas putida F1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001267423.1 2375697 R 351746 CDS YP_001267424.1 148547322 5191317 2376795..2377673 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2377673 5191317 Pput_2101 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267424.1 2376795 D 351746 CDS YP_001267425.1 148547323 5193134 complement(2377740..2378390) 1 NC_009512.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; SH3 type 3 domain-containing protein 2378390 5193134 Pput_2102 Pseudomonas putida F1 SH3 type 3 domain-containing protein YP_001267425.1 2377740 R 351746 CDS YP_001267426.1 148547324 5193135 2378662..2380005 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2380005 5193135 Pput_2103 Pseudomonas putida F1 outer membrane porin YP_001267426.1 2378662 D 351746 CDS YP_001267427.1 148547325 5192950 2380191..2380670 1 NC_009512.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2380670 5192950 Pput_2104 Pseudomonas putida F1 3-demethylubiquinone-9 3-methyltransferase YP_001267427.1 2380191 D 351746 CDS YP_001267428.1 148547326 5192951 complement(2380751..2382496) 1 NC_009512.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 2382496 5192951 Pput_2105 Pseudomonas putida F1 choline/carnitine/betaine transporter YP_001267428.1 2380751 R 351746 CDS YP_001267429.1 148547327 5190193 2382812..2383129 1 NC_009512.1 hypothetical protein 2383129 5190193 Pput_2106 Pseudomonas putida F1 hypothetical protein YP_001267429.1 2382812 D 351746 CDS YP_001267430.1 148547328 5190194 2383138..2383338 1 NC_009512.1 PFAM: protein of unknown function DUF1289; hypothetical protein 2383338 5190194 Pput_2107 Pseudomonas putida F1 hypothetical protein YP_001267430.1 2383138 D 351746 CDS YP_001267431.1 148547329 5195143 2383388..2384029 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2384029 5195143 Pput_2108 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267431.1 2383388 D 351746 CDS YP_001267432.1 148547330 5195144 2384238..2385026 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2385026 5195144 Pput_2109 Pseudomonas putida F1 extracellular solute-binding protein YP_001267432.1 2384238 D 351746 CDS YP_001267433.1 148547331 5190544 complement(2385096..2386439) 1 NC_009512.1 PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 2386439 5190544 Pput_2110 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001267433.1 2385096 R 351746 CDS YP_001267434.1 148547332 5190545 complement(2386458..2388713) 1 NC_009512.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 2388713 5190545 Pput_2111 Pseudomonas putida F1 aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit YP_001267434.1 2386458 R 351746 CDS YP_001267435.1 148547333 5192041 complement(2388713..2389168) 1 NC_009512.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2389168 5192041 Pput_2112 Pseudomonas putida F1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001267435.1 2388713 R 351746 CDS YP_001267436.1 148547334 5192042 2389439..2391625 1 NC_009512.1 PFAM: OsmC family protein; protein of unknown function DUF181; hypothetical protein 2391625 5192042 Pput_2113 Pseudomonas putida F1 hypothetical protein YP_001267436.1 2389439 D 351746 CDS YP_001267437.1 148547335 5192461 complement(2391817..2392695) 1 NC_009512.1 hypothetical protein 2392695 5192461 Pput_2114 Pseudomonas putida F1 hypothetical protein YP_001267437.1 2391817 R 351746 CDS YP_001267438.1 148547336 5192462 complement(2392698..2395688) 1 NC_009512.1 hypothetical protein 2395688 5192462 Pput_2115 Pseudomonas putida F1 hypothetical protein YP_001267438.1 2392698 R 351746 CDS YP_001267439.1 148547337 5192609 complement(2395681..2396604) 1 NC_009512.1 hypothetical protein 2396604 5192609 Pput_2116 Pseudomonas putida F1 hypothetical protein YP_001267439.1 2395681 R 351746 CDS YP_001267440.1 148547338 5192610 complement(2396601..2398769) 1 NC_009512.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 2398769 5192610 Pput_2117 Pseudomonas putida F1 Rhs element Vgr protein YP_001267440.1 2396601 R 351746 CDS YP_001267441.1 148547339 5193647 complement(2398843..2399358) 1 NC_009512.1 PFAM: protein of unknown function DUF796; hypothetical protein 2399358 5193647 Pput_2118 Pseudomonas putida F1 hypothetical protein YP_001267441.1 2398843 R 351746 CDS YP_001267442.1 148547340 5193648 complement(2399491..2400360) 1 NC_009512.1 hypothetical protein 2400360 5193648 Pput_2119 Pseudomonas putida F1 hypothetical protein YP_001267442.1 2399491 R 351746 CDS YP_001267443.1 148547341 5192084 complement(2400362..2401699) 1 NC_009512.1 PFAM: protein of unknown function DUF876; hypothetical protein 2401699 5192084 Pput_2120 Pseudomonas putida F1 hypothetical protein YP_001267443.1 2400362 R 351746 CDS YP_001267444.1 148547342 5192085 complement(2401755..2402552) 1 NC_009512.1 hypothetical protein 2402552 5192085 Pput_2121 Pseudomonas putida F1 hypothetical protein YP_001267444.1 2401755 R 351746 CDS YP_001267445.1 148547343 5190736 complement(2402549..2403118) 1 NC_009512.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 2403118 5190736 Pput_2122 Pseudomonas putida F1 FHA domain-containing protein YP_001267445.1 2402549 R 351746 CDS YP_001267446.1 148547344 5190737 complement(2403115..2404131) 1 NC_009512.1 PFAM: protein of unknown function DUF1305; hypothetical protein 2404131 5190737 Pput_2123 Pseudomonas putida F1 hypothetical protein YP_001267446.1 2403115 R 351746 CDS YP_001267447.1 148547345 5195011 complement(2404095..2405861) 1 NC_009512.1 PFAM: protein of unknown function DUF879; hypothetical protein 2405861 5195011 Pput_2124 Pseudomonas putida F1 hypothetical protein YP_001267447.1 2404095 R 351746 CDS YP_001267448.1 148547346 5195012 complement(2405865..2406275) 1 NC_009512.1 PFAM: GPW/gp25 family protein; GPW/gp25 family protein 2406275 5195012 Pput_2125 Pseudomonas putida F1 GPW/gp25 family protein YP_001267448.1 2405865 R 351746 CDS YP_001267449.1 148547347 5194063 complement(2406272..2407762) 1 NC_009512.1 PFAM: protein of unknown function DUF877; hypothetical protein 2407762 5194063 Pput_2126 Pseudomonas putida F1 hypothetical protein YP_001267449.1 2406272 R 351746 CDS YP_001267450.1 148547348 5194064 complement(2407780..2408283) 1 NC_009512.1 PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 2408283 5194064 Pput_2127 Pseudomonas putida F1 hypothetical protein YP_001267450.1 2407780 R 351746 CDS YP_001267451.1 148547349 5190401 2408611..2409261 1 NC_009512.1 hypothetical protein 2409261 5190401 Pput_2128 Pseudomonas putida F1 hypothetical protein YP_001267451.1 2408611 D 351746 CDS YP_001267452.1 148547350 5190402 2409249..2410712 1 NC_009512.1 PFAM: ImpA domain protein; ImpA domain-containing protein 2410712 5190402 Pput_2129 Pseudomonas putida F1 ImpA domain-containing protein YP_001267452.1 2409249 D 351746 CDS YP_001267453.1 148547351 5192570 2410709..2414329 1 NC_009512.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 2414329 5192570 Pput_2130 Pseudomonas putida F1 ImcF domain-containing protein YP_001267453.1 2410709 D 351746 CDS YP_001267454.1 148547352 5192571 complement(2414407..2416260) 1 NC_009512.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2416260 5192571 Pput_2131 Pseudomonas putida F1 ABC transporter-like protein YP_001267454.1 2414407 R 351746 CDS YP_001267455.1 148547353 5192020 2416563..2418053 1 NC_009512.1 hypothetical protein 2418053 5192020 Pput_2132 Pseudomonas putida F1 hypothetical protein YP_001267455.1 2416563 D 351746 CDS YP_001267456.1 148547354 5192021 2418228..2419841 1 NC_009512.1 hypothetical protein 2419841 5192021 Pput_2133 Pseudomonas putida F1 hypothetical protein YP_001267456.1 2418228 D 351746 CDS YP_001267457.1 148547355 5194696 2419838..2420056 1 NC_009512.1 hypothetical protein 2420056 5194696 Pput_2134 Pseudomonas putida F1 hypothetical protein YP_001267457.1 2419838 D 351746 CDS YP_001267458.1 148547356 5194697 2420053..2420760 1 NC_009512.1 cellulose synthase 2420760 5194697 Pput_2135 Pseudomonas putida F1 cellulose synthase YP_001267458.1 2420053 D 351746 CDS YP_001267459.1 148547357 5193017 2420757..2423366 1 NC_009512.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 2423366 bcsA 5193017 bcsA Pseudomonas putida F1 cellulose synthase catalytic subunit YP_001267459.1 2420757 D 351746 CDS YP_001267460.1 148547358 5193018 2423402..2425651 1 NC_009512.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 2425651 5193018 Pput_2137 Pseudomonas putida F1 cellulose synthase regulator protein YP_001267460.1 2423402 D 351746 CDS YP_001267461.1 148547359 5192939 2425663..2426766 1 NC_009512.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 2426766 5192939 Pput_2138 Pseudomonas putida F1 endo-1,4-D-glucanase YP_001267461.1 2425663 D 351746 CDS YP_001267462.1 148547360 5192940 2426754..2430272 1 NC_009512.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 2430272 5192940 Pput_2139 Pseudomonas putida F1 cellulose synthase subunit BcsC YP_001267462.1 2426754 D 351746 CDS YP_001267463.1 148547361 5190361 2430610..2431476 1 NC_009512.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2431476 5190361 Pput_2140 Pseudomonas putida F1 dihydrodipicolinate synthase YP_001267463.1 2430610 D 351746 CDS YP_001267464.1 148547362 5190362 2431662..2432705 1 NC_009512.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 2432705 amiE 5190362 amiE Pseudomonas putida F1 acylamide amidohydrolase YP_001267464.1 2431662 D 351746 CDS YP_001267465.1 148547363 5190690 2432761..2433882 1 NC_009512.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2433882 5190690 Pput_2142 Pseudomonas putida F1 ATPase YP_001267465.1 2432761 D 351746 CDS YP_001267466.1 148547364 5190691 2433904..2435061 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 2435061 5190691 Pput_2143 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001267466.1 2433904 D 351746 CDS YP_001267467.1 148547365 5190454 2435058..2435642 1 NC_009512.1 PFAM: ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2435642 5190454 Pput_2144 Pseudomonas putida F1 response regulator receiver/ANTAR domain-containing protein YP_001267467.1 2435058 D 351746 CDS YP_001267468.1 148547366 5190455 2435655..2436167 1 NC_009512.1 PFAM: AmiS/UreI transporter; AmiS/UreI transporter 2436167 5190455 Pput_2145 Pseudomonas putida F1 AmiS/UreI transporter YP_001267468.1 2435655 D 351746 CDS YP_001267469.1 148547367 5192675 complement(2436214..2436660) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2436660 5192675 Pput_2146 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267469.1 2436214 R 351746 CDS YP_001267470.1 148547368 5192676 complement(2436733..2438421) 1 NC_009512.1 PFAM: peptidase M24; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 2438421 5192676 Pput_2147 Pseudomonas putida F1 oxidoreductase FAD-binding subunit YP_001267470.1 2436733 R 351746 CDS YP_001267471.1 148547369 5191022 2438500..2439996 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2439996 5191022 Pput_2148 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267471.1 2438500 D 351746 CDS YP_001267472.1 148547370 5191023 2440267..2441892 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2441892 5191023 Pput_2149 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001267472.1 2440267 D 351746 CDS YP_001267473.1 148547371 5192143 2442634..2445348 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase 2445348 5192143 Pput_2150 Pseudomonas putida F1 magnesium-translocating P-type ATPase YP_001267473.1 2442634 D 351746 CDS YP_001267474.1 148547372 5192144 2445370..2445747 1 NC_009512.1 hypothetical protein 2445747 5192144 Pput_2151 Pseudomonas putida F1 hypothetical protein YP_001267474.1 2445370 D 351746 CDS YP_001267475.1 148547373 5192314 complement(2445848..2447074) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2447074 5192314 Pput_2152 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267475.1 2445848 R 351746 CDS YP_001267476.1 148547374 5192315 complement(2447367..2447921) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2447921 5192315 Pput_2153 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267476.1 2447367 R 351746 CDS YP_001267477.1 148547375 5195163 2448030..2448926 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2448926 5195163 Pput_2154 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267477.1 2448030 D 351746 CDS YP_001267478.1 148547376 5195164 complement(2448986..2449861) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2449861 5195164 Pput_2155 Pseudomonas putida F1 UspA domain-containing protein YP_001267478.1 2448986 R 351746 CDS YP_001267479.1 148547377 5191632 complement(2450152..2451093) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2451093 5191632 Pput_2156 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267479.1 2450152 R 351746 CDS YP_001267480.1 148547378 5191633 2451236..2452378 1 NC_009512.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2452378 5191633 Pput_2157 Pseudomonas putida F1 iron-containing alcohol dehydrogenase YP_001267480.1 2451236 D 351746 CDS YP_001267481.1 148547379 5193193 2452423..2453766 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2453766 5193193 Pput_2158 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267481.1 2452423 D 351746 CDS YP_001267482.1 148547380 5193194 2453904..2454689 1 NC_009512.1 PFAM: Hydratase/decarboxylase; hydratase/decarboxylase 2454689 5193194 Pput_2159 Pseudomonas putida F1 hydratase/decarboxylase YP_001267482.1 2453904 D 351746 CDS YP_001267483.1 148547381 5191212 complement(2454679..2455497) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2455497 5191212 Pput_2160 Pseudomonas putida F1 XRE family transcriptional regulator YP_001267483.1 2454679 R 351746 CDS YP_001267484.1 148547382 5191213 2455604..2455918 1 NC_009512.1 hypothetical protein 2455918 5191213 Pput_2161 Pseudomonas putida F1 hypothetical protein YP_001267484.1 2455604 D 351746 CDS YP_001267485.1 148547383 5191860 2455915..2456340 1 NC_009512.1 PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); membrane-associated protein in eicosanoid and glutathione metabolism 2456340 5191860 Pput_2162 Pseudomonas putida F1 membrane-associated protein in eicosanoid and glutathione metabolism YP_001267485.1 2455915 D 351746 CDS YP_001267486.1 148547384 5191861 2456418..2456645 1 NC_009512.1 hypothetical protein 2456645 5191861 Pput_2163 Pseudomonas putida F1 hypothetical protein YP_001267486.1 2456418 D 351746 CDS YP_001267487.1 148547385 5193132 2456962..2457993 1 NC_009512.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate ABC transporter substrate-binding protein 2457993 5193132 Pput_2164 Pseudomonas putida F1 phosphate ABC transporter substrate-binding protein YP_001267487.1 2456962 D 351746 CDS YP_001267488.1 148547386 5193133 2458064..2459032 1 NC_009512.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2459032 5193133 Pput_2165 Pseudomonas putida F1 phosphate ABC transporter permease YP_001267488.1 2458064 D 351746 CDS YP_001267489.1 148547387 5191498 2459029..2459922 1 NC_009512.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2459922 5191498 Pput_2166 Pseudomonas putida F1 phosphate ABC transporter permease YP_001267489.1 2459029 D 351746 CDS YP_001267490.1 148547388 5191499 2459973..2460758 1 NC_009512.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2460758 5191499 Pput_2167 Pseudomonas putida F1 phosphate ABC transporter ATP-binding protein YP_001267490.1 2459973 D 351746 CDS YP_001267491.1 148547389 5191460 2460853..2461551 1 NC_009512.1 hypothetical protein 2461551 5191460 Pput_2168 Pseudomonas putida F1 hypothetical protein YP_001267491.1 2460853 D 351746 CDS YP_001267492.1 148547390 5191461 2461551..2462150 1 NC_009512.1 hypothetical protein 2462150 5191461 Pput_2169 Pseudomonas putida F1 hypothetical protein YP_001267492.1 2461551 D 351746 CDS YP_001267493.1 148547391 5190215 2462543..2463730 1 NC_009512.1 hypothetical protein 2463730 5190215 Pput_2170 Pseudomonas putida F1 hypothetical protein YP_001267493.1 2462543 D 351746 CDS YP_001267494.1 148547392 5190216 2463871..2465034 1 NC_009512.1 PFAM: domain of unknown function DUF1745; hypothetical protein 2465034 5190216 Pput_2171 Pseudomonas putida F1 hypothetical protein YP_001267494.1 2463871 D 351746 CDS YP_001267495.1 148547393 5193420 2464964..2466901 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 2466901 5193420 Pput_2172 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001267495.1 2464964 D 351746 CDS YP_001267496.1 148547394 5193421 complement(2466947..2467612) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2467612 5193421 Pput_2173 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001267496.1 2466947 R 351746 CDS YP_001267497.1 148547395 5195282 complement(2467667..2468227) 1 NC_009512.1 SMART: Rhodanese domain protein; rhodanese domain-containing protein 2468227 5195282 Pput_2174 Pseudomonas putida F1 rhodanese domain-containing protein YP_001267497.1 2467667 R 351746 CDS YP_001267498.1 148547396 5195283 complement(2468496..2469278) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2469278 5195283 Pput_2175 Pseudomonas putida F1 ABC transporter-like protein YP_001267498.1 2468496 R 351746 CDS YP_001267499.1 148547397 5191537 complement(2469301..2470545) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2470545 5191537 Pput_2176 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001267499.1 2469301 R 351746 CDS YP_001267500.1 148547398 5191538 complement(2470562..2471272) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2471272 5191538 Pput_2177 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001267500.1 2470562 R 351746 CDS YP_001267501.1 148547399 5190657 complement(2471269..2471988) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2471988 5190657 Pput_2178 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001267501.1 2471269 R 351746 CDS YP_001267502.1 148547400 5190658 complement(2472140..2472892) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2472892 5190658 Pput_2179 Pseudomonas putida F1 extracellular solute-binding protein YP_001267502.1 2472140 R 351746 CDS YP_001267503.1 148547401 5190369 complement(2472915..2473787) 1 NC_009512.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator 2473787 5190369 Pput_2180 Pseudomonas putida F1 RpiR family transcriptional regulator YP_001267503.1 2472915 R 351746 CDS YP_001267504.1 148547402 5190370 2473930..2474955 1 NC_009512.1 PFAM: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 2474955 5190370 Pput_2181 Pseudomonas putida F1 malate/L-lactate dehydrogenase YP_001267504.1 2473930 D 351746 CDS YP_001267505.1 148547403 5190770 2475119..2476315 1 NC_009512.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2476315 5190770 Pput_2182 Pseudomonas putida F1 aromatic amino acid aminotransferase YP_001267505.1 2475119 D 351746 CDS YP_001267506.1 148547404 5190771 2476699..2477979 1 NC_009512.1 PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; aromatic amino acid permease 2477979 5190771 Pput_2183 Pseudomonas putida F1 aromatic amino acid permease YP_001267506.1 2476699 D 351746 CDS YP_001267507.1 148547405 5190570 complement(2478043..2479239) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2479239 5190570 Pput_2184 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267507.1 2478043 R 351746 CDS YP_001267508.1 148547406 5190571 2479540..2480040 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 2480040 5190571 Pput_2185 Pseudomonas putida F1 redoxin domain-containing protein YP_001267508.1 2479540 D 351746 CDS YP_001267509.1 148547407 5194787 2480388..2481695 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2481695 5194787 Pput_2186 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001267509.1 2480388 D 351746 CDS YP_001267510.1 148547408 5194788 2481692..2484790 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2484790 5194788 Pput_2187 Pseudomonas putida F1 acriflavin resistance protein YP_001267510.1 2481692 D 351746 CDS YP_001267511.1 148547409 5190280 2484787..2487894 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2487894 5190280 Pput_2188 Pseudomonas putida F1 acriflavin resistance protein YP_001267511.1 2484787 D 351746 CDS YP_001267512.1 148547410 5190281 2487891..2489381 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2489381 5190281 Pput_2189 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001267512.1 2487891 D 351746 CDS YP_001267513.1 148547411 5190437 2489512..2491599 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase 2491599 5190437 Pput_2190 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001267513.1 2489512 D 351746 CDS YP_001267514.1 148547412 5190438 complement(2491651..2491911) 1 NC_009512.1 PFAM: protein of unknown function DUF1652; hypothetical protein 2491911 5190438 Pput_2191 Pseudomonas putida F1 hypothetical protein YP_001267514.1 2491651 R 351746 CDS YP_001267515.1 148547413 5195481 complement(2492186..2492833) 1 NC_009512.1 PFAM: protein of unknown function DUF1345; hypothetical protein 2492833 5195481 Pput_2192 Pseudomonas putida F1 hypothetical protein YP_001267515.1 2492186 R 351746 CDS YP_001267516.1 148547414 5195482 2493007..2494644 1 NC_009512.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2494644 5195482 Pput_2193 Pseudomonas putida F1 phosphoglucomutase YP_001267516.1 2493007 D 351746 CDS YP_001267517.1 148547415 5193756 2494723..2495235 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 2495235 5193756 Pput_2194 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001267517.1 2494723 D 351746 CDS YP_001267518.1 148547416 5193757 2495232..2496176 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 2496176 5193757 Pput_2195 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001267518.1 2495232 D 351746 CDS YP_001267519.1 148547417 5190473 2496244..2498649 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2498649 5190473 Pput_2196 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267519.1 2496244 D 351746 CDS YP_001267520.1 148547418 5190474 complement(2498775..2499713) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2499713 5190474 Pput_2197 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267520.1 2498775 R 351746 CDS YP_001267521.1 148547419 5193754 2499862..2500689 1 NC_009512.1 PFAM: amidohydrolase 2; amidohydrolase 2 2500689 5193754 Pput_2198 Pseudomonas putida F1 amidohydrolase 2 YP_001267521.1 2499862 D 351746 CDS YP_001267522.1 148547420 5193755 2500867..2501607 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2501607 5193755 Pput_2199 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001267522.1 2500867 D 351746 CDS YP_001267523.1 148547421 5193514 complement(2501810..2502226) 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2502226 5193514 Pput_2200 Pseudomonas putida F1 endoribonuclease L-PSP YP_001267523.1 2501810 R 351746 CDS YP_001267524.1 148547422 5193515 complement(2502226..2503545) 1 NC_009512.1 flavoprotein involved in K+ transport-like protein 2503545 5193515 Pput_2201 Pseudomonas putida F1 flavoprotein involved in K+ transport-like protein YP_001267524.1 2502226 R 351746 CDS YP_001267525.1 148547423 5194564 2503863..2504540 1 NC_009512.1 PFAM: protein of unknown function DUF1028; hypothetical protein 2504540 5194564 Pput_2202 Pseudomonas putida F1 hypothetical protein YP_001267525.1 2503863 D 351746 CDS YP_001267526.1 148547424 5194565 2504533..2505693 1 NC_009512.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2505693 5194565 Pput_2203 Pseudomonas putida F1 acetylornithine deacetylase YP_001267526.1 2504533 D 351746 CDS YP_001267527.1 148547425 5194077 complement(2505735..2507003) 1 NC_009512.1 PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 2507003 5194077 Pput_2204 Pseudomonas putida F1 carbohydrate-selective porin OprB YP_001267527.1 2505735 R 351746 CDS YP_001267528.1 148547426 5194078 complement(2507104..2509521) 1 NC_009512.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 2509521 5194078 Pput_2205 Pseudomonas putida F1 Pyrrolo-quinoline quinone YP_001267528.1 2507104 R 351746 CDS YP_001267529.1 148547427 5191989 complement(2509784..2510134) 1 NC_009512.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 2510134 5191989 Pput_2206 Pseudomonas putida F1 cupin YP_001267529.1 2509784 R 351746 CDS YP_001267530.1 148547428 5191990 2510252..2511157 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2511157 5191990 Pput_2207 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267530.1 2510252 D 351746 CDS YP_001267531.1 148547429 5195499 2511264..2512463 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2512463 5195499 Pput_2208 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267531.1 2511264 D 351746 CDS YP_001267532.1 148547430 5195500 complement(2512511..2513122) 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2513122 5195500 Pput_2209 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267532.1 2512511 R 351746 CDS YP_001267533.1 148547431 5192331 2513227..2514204 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 2514204 5192331 Pput_2210 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267533.1 2513227 D 351746 CDS YP_001267534.1 148547432 5192332 complement(2514206..2515057) 1 NC_009512.1 PFAM: SCP-like extracellular; SCP-like extracellular protein 2515057 5192332 Pput_2211 Pseudomonas putida F1 SCP-like extracellular protein YP_001267534.1 2514206 R 351746 CDS YP_001267535.1 148547433 5194632 complement(2515264..2515875) 1 NC_009512.1 PFAM: cell wall hydrolase, SleB; cell wall hydrolase SleB 2515875 5194632 Pput_2212 Pseudomonas putida F1 cell wall hydrolase SleB YP_001267535.1 2515264 R 351746 CDS YP_001267536.1 148547434 5194633 complement(2515910..2516836) 1 NC_009512.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 2516836 5194633 Pput_2213 Pseudomonas putida F1 auxin efflux carrier YP_001267536.1 2515910 R 351746 CDS YP_001267537.1 148547435 5193532 complement(2516963..2517826) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2517826 5193532 Pput_2214 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267537.1 2516963 R 351746 CDS YP_001267538.1 148547436 5193533 complement(2517920..2518768) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2518768 5193533 Pput_2215 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267538.1 2517920 R 351746 CDS YP_001267539.1 148547437 5190960 complement(2518765..2519781) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 2519781 5190960 Pput_2216 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001267539.1 2518765 R 351746 CDS YP_001267540.1 148547438 5190961 complement(2519877..2522021) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2522021 5190961 Pput_2217 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001267540.1 2519877 R 351746 CDS YP_001267541.1 148547439 5190923 2522269..2523588 1 NC_009512.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; Na+/H+ antiporter NhaC 2523588 5190923 Pput_2218 Pseudomonas putida F1 Na+/H+ antiporter NhaC YP_001267541.1 2522269 D 351746 CDS YP_001267542.1 148547440 5190924 complement(2523603..2524610) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 2524610 5190924 Pput_2219 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001267542.1 2523603 R 351746 CDS YP_001267543.1 148547441 5192434 complement(2524884..2526668) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2526668 5192434 Pput_2220 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267543.1 2524884 R 351746 CDS YP_001267544.1 148547442 5192435 complement(2526746..2528368) 1 NC_009512.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2528368 5192435 Pput_2221 Pseudomonas putida F1 acyl-CoA synthetase YP_001267544.1 2526746 R 351746 CDS YP_001267545.1 148547443 5192046 2528562..2529968 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2529968 5192046 Pput_2222 Pseudomonas putida F1 PAS/PAC sensor signal transduction histidine kinase YP_001267545.1 2528562 D 351746 CDS YP_001267546.1 148547444 5192047 2529978..2530610 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; response regulator receiver protein 2530610 5192047 Pput_2223 Pseudomonas putida F1 response regulator receiver protein YP_001267546.1 2529978 D 351746 CDS YP_001267547.1 148547445 5192469 2530791..2531264 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2531264 5192469 Pput_2224 Pseudomonas putida F1 MarR family transcriptional regulator YP_001267547.1 2530791 D 351746 CDS YP_001267548.1 148547446 5192470 2531295..2532488 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 2532488 5192470 Pput_2225 Pseudomonas putida F1 secretion protein HlyD family protein YP_001267548.1 2531295 D 351746 CDS YP_001267549.1 148547447 5191308 2532485..2534020 1 NC_009512.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2534020 5191308 Pput_2226 Pseudomonas putida F1 EmrB/QacA family drug resistance transporter YP_001267549.1 2532485 D 351746 CDS YP_001267550.1 148547448 5191309 2534949..2535695 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2535695 5191309 Pput_2227 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001267550.1 2534949 D 351746 CDS YP_001267551.1 148547449 5191320 complement(2535705..2537771) 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 2537771 5191320 Pput_2228 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001267551.1 2535705 R 351746 CDS YP_001267552.1 148547450 5191321 complement(2537834..2539495) 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 2539495 5191321 Pput_2229 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001267552.1 2537834 R 351746 CDS YP_001267553.1 148547451 5195031 complement(2539553..2540962) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2540962 5195031 Pput_2230 Pseudomonas putida F1 GntR family transcriptional regulator YP_001267553.1 2539553 R 351746 CDS YP_001267554.1 148547452 5195032 complement(2541013..2542416) 1 NC_009512.1 TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type, accessory protein FixG 2542416 5195032 Pput_2231 Pseudomonas putida F1 cytochrome c oxidase cbb3 type, accessory protein FixG YP_001267554.1 2541013 R 351746 CDS YP_001267555.1 148547453 5192014 complement(2542538..2542777) 1 NC_009512.1 hypothetical protein 2542777 5192014 Pput_2232 Pseudomonas putida F1 hypothetical protein YP_001267555.1 2542538 R 351746 CDS YP_001267556.1 148547454 5192015 2542947..2543465 1 NC_009512.1 PFAM: MgtC/SapB transporter; MgtC/SapB transporter 2543465 5192015 Pput_2233 Pseudomonas putida F1 MgtC/SapB transporter YP_001267556.1 2542947 D 351746 CDS YP_001267557.1 148547455 5191968 complement(2543998..2544897) 1 NC_009512.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 2544897 5191968 Pput_2234 Pseudomonas putida F1 hydroxymethylglutaryl-CoA lyase YP_001267557.1 2543998 R 351746 CDS YP_001267558.1 148547456 5191969 complement(2544917..2545315) 1 NC_009512.1 PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 2545315 5191969 Pput_2235 Pseudomonas putida F1 MerR family transcriptional regulator YP_001267558.1 2544917 R 351746 CDS YP_001267559.1 148547457 5192275 complement(2545391..2546269) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 2546269 5192275 Pput_2236 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267559.1 2545391 R 351746 CDS YP_001267560.1 148547458 5192276 2546363..2547628 1 NC_009512.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2547628 5192276 Pput_2237 Pseudomonas putida F1 4-hydroxybenzoate 3-monooxygenase YP_001267560.1 2546363 D 351746 CDS YP_001267561.1 148547459 5191712 2547773..2549569 1 NC_009512.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2549569 5191712 Pput_2238 Pseudomonas putida F1 gamma-glutamyltransferase YP_001267561.1 2547773 D 351746 CDS YP_001267562.1 148547460 5191713 2549614..2550495 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2550495 5191713 Pput_2239 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267562.1 2549614 D 351746 CDS YP_001267563.1 148547461 5191791 complement(2550648..2551700) 1 NC_009512.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2551700 5191791 Pput_2240 Pseudomonas putida F1 ornithine cyclodeaminase YP_001267563.1 2550648 R 351746 CDS YP_001267564.1 148547462 5191792 2551888..2552310 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2552310 5191792 Pput_2241 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001267564.1 2551888 D 351746 CDS YP_001267565.1 148547463 5192738 complement(2552385..2552984) 1 NC_009512.1 PFAM: lipid-binding START domain protein; lipid-binding START domain-containing protein 2552984 5192738 Pput_2242 Pseudomonas putida F1 lipid-binding START domain-containing protein YP_001267565.1 2552385 R 351746 CDS YP_001267566.1 148547464 5192739 complement(2553074..2554009) 1 NC_009512.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; hypothetical protein 2554009 5192739 Pput_2243 Pseudomonas putida F1 hypothetical protein YP_001267566.1 2553074 R 351746 CDS YP_001267567.1 148547465 5192905 complement(2554017..2555408) 1 NC_009512.1 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 2555408 5192905 Pput_2244 Pseudomonas putida F1 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_001267567.1 2554017 R 351746 CDS YP_001267568.1 148547466 5192906 complement(2555425..2556405) 1 NC_009512.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2556405 5192906 Pput_2245 Pseudomonas putida F1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001267568.1 2555425 R 351746 CDS YP_001267569.1 148547467 5194185 2556666..2557550 1 NC_009512.1 hypothetical protein 2557550 5194185 Pput_2246 Pseudomonas putida F1 hypothetical protein YP_001267569.1 2556666 D 351746 CDS YP_001267570.1 148547468 5194186 2557699..2558382 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2558382 5194186 Pput_2247 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267570.1 2557699 D 351746 CDS YP_001267571.1 148547469 5192708 complement(2558421..2559428) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2559428 5192708 Pput_2248 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267571.1 2558421 R 351746 CDS YP_001267572.1 148547470 5192709 2559590..2560060 1 NC_009512.1 hypothetical protein 2560060 5192709 Pput_2249 Pseudomonas putida F1 hypothetical protein YP_001267572.1 2559590 D 351746 CDS YP_001267573.1 148547471 5193392 2560044..2560376 1 NC_009512.1 hypothetical protein 2560376 5193392 Pput_2250 Pseudomonas putida F1 hypothetical protein YP_001267573.1 2560044 D 351746 CDS YP_001267574.1 148547472 5193393 complement(2560421..2560747) 1 NC_009512.1 hypothetical protein 2560747 5193393 Pput_2251 Pseudomonas putida F1 hypothetical protein YP_001267574.1 2560421 R 351746 CDS YP_001267575.1 148547473 5190224 2561254..2561676 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2561676 5190224 Pput_2252 Pseudomonas putida F1 endoribonuclease L-PSP YP_001267575.1 2561254 D 351746 CDS YP_001267576.1 148547474 5190225 2561821..2562855 1 NC_009512.1 hypothetical protein 2562855 5190225 Pput_2253 Pseudomonas putida F1 hypothetical protein YP_001267576.1 2561821 D 351746 CDS YP_001267577.1 148547475 5191260 2563186..2564058 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2564058 5191260 Pput_2254 Pseudomonas putida F1 hypothetical protein YP_001267577.1 2563186 D 351746 CDS YP_001267578.1 148547476 5191261 complement(2564055..2564774) 1 NC_009512.1 hypothetical protein 2564774 5191261 Pput_2255 Pseudomonas putida F1 hypothetical protein YP_001267578.1 2564055 R 351746 CDS YP_001267579.1 148547477 5190318 complement(2564856..2565107) 1 NC_009512.1 hypothetical protein 2565107 5190318 Pput_2256 Pseudomonas putida F1 hypothetical protein YP_001267579.1 2564856 R 351746 CDS YP_001267580.1 148547478 5190319 2565353..2566819 1 NC_009512.1 hypothetical protein 2566819 5190319 Pput_2257 Pseudomonas putida F1 hypothetical protein YP_001267580.1 2565353 D 351746 CDS YP_001267581.1 148547479 5191584 2566816..2567709 1 NC_009512.1 hypothetical protein 2567709 5191584 Pput_2258 Pseudomonas putida F1 hypothetical protein YP_001267581.1 2566816 D 351746 CDS YP_001267582.1 148547480 5191585 complement(2567769..2568725) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2568725 5191585 Pput_2259 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267582.1 2567769 R 351746 CDS YP_001267583.1 148547481 5193506 complement(2568874..2570958) 1 NC_009512.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; 5-oxoprolinase 2570958 5193506 Pput_2260 Pseudomonas putida F1 5-oxoprolinase YP_001267583.1 2568874 R 351746 CDS YP_001267584.1 148547482 5193507 complement(2570972..2572717) 1 NC_009512.1 PFAM: Hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase 2572717 5193507 Pput_2261 Pseudomonas putida F1 hydantoinase B/oxoprolinase YP_001267584.1 2570972 R 351746 CDS YP_001267585.1 148547483 5194984 complement(2572872..2573792) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2573792 5194984 Pput_2262 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267585.1 2572872 R 351746 CDS YP_001267586.1 148547484 5194985 2573807..2574247 1 NC_009512.1 PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 2574247 5194985 Pput_2263 Pseudomonas putida F1 transmembrane pair domain-containing protein YP_001267586.1 2573807 D 351746 CDS YP_001267587.1 148547485 5194449 complement(2574574..2575593) 1 NC_009512.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2575593 5194449 Pput_2264 Pseudomonas putida F1 branched-chain amino acid aminotransferase YP_001267587.1 2574574 R 351746 CDS YP_001267588.1 148547486 5194450 complement(2575730..2577307) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2577307 5194450 Pput_2265 Pseudomonas putida F1 ABC transporter-like protein YP_001267588.1 2575730 R 351746 CDS YP_001267589.1 148547487 5193982 complement(2577479..2577841) 1 NC_009512.1 hypothetical protein 2577841 5193982 Pput_2266 Pseudomonas putida F1 hypothetical protein YP_001267589.1 2577479 R 351746 CDS YP_001267590.1 148547488 5193983 complement(2577838..2577990) 1 NC_009512.1 hypothetical protein 2577990 5193983 Pput_2267 Pseudomonas putida F1 hypothetical protein YP_001267590.1 2577838 R 351746 CDS YP_001267591.1 148547489 5194301 2578408..2579484 1 NC_009512.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin biosynthesis protein CobW 2579484 5194301 Pput_2268 Pseudomonas putida F1 cobalamin biosynthesis protein CobW YP_001267591.1 2578408 D 351746 CDS YP_001267592.1 148547490 5194302 2579488..2583249 1 NC_009512.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2583249 cobN 5194302 cobN Pseudomonas putida F1 cobaltochelatase subunit CobN YP_001267592.1 2579488 D 351746 CDS YP_001267593.1 148547491 5192319 2583251..2584264 1 NC_009512.1 PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; magnesium chelatase 2584264 5192319 Pput_2270 Pseudomonas putida F1 magnesium chelatase YP_001267593.1 2583251 D 351746 CDS YP_001267594.1 148547492 5192320 2584342..2584932 1 NC_009512.1 hypothetical protein 2584932 5192320 Pput_2271 Pseudomonas putida F1 hypothetical protein YP_001267594.1 2584342 D 351746 CDS YP_001267595.1 148547493 5194067 complement(2585039..2585305) 1 NC_009512.1 hypothetical protein 2585305 5194067 Pput_2272 Pseudomonas putida F1 hypothetical protein YP_001267595.1 2585039 R 351746 CDS YP_001267596.1 148547494 5194068 2585647..2586972 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 2586972 5194068 Pput_2273 Pseudomonas putida F1 sigma-54 dependent trancsriptional regulator YP_001267596.1 2585647 D 351746 CDS YP_001267597.1 148547495 5190509 complement(2587308..2589308) 1 NC_009512.1 PFAM: peptidase U32; peptidase U32 2589308 5190509 Pput_2274 Pseudomonas putida F1 peptidase U32 YP_001267597.1 2587308 R 351746 CDS YP_001267598.1 148547496 5190510 complement(2589523..2589903) 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2589903 5190510 Pput_2275 Pseudomonas putida F1 endoribonuclease L-PSP YP_001267598.1 2589523 R 351746 CDS YP_001267599.1 148547497 5193088 2590040..2590732 1 NC_009512.1 PFAM: protein of unknown function DUF633; hypothetical protein 2590732 5193088 Pput_2276 Pseudomonas putida F1 hypothetical protein YP_001267599.1 2590040 D 351746 CDS YP_001267600.1 148547498 5193089 complement(2590734..2590994) 1 NC_009512.1 hypothetical protein 2590994 5193089 Pput_2277 Pseudomonas putida F1 hypothetical protein YP_001267600.1 2590734 R 351746 CDS YP_001267601.1 148547499 5192925 2591118..2592050 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2592050 5192925 Pput_2278 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267601.1 2591118 D 351746 CDS YP_001267602.1 148547500 5192926 complement(2592152..2593303) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2593303 5192926 Pput_2279 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267602.1 2592152 R 351746 CDS YP_001267603.1 148547501 5192992 complement(2593320..2594393) 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2594393 5192992 Pput_2280 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001267603.1 2593320 R 351746 CDS YP_001267604.1 148547502 5192993 2594722..2600559 1 NC_009512.1 hypothetical protein 2600559 5192993 Pput_2281 Pseudomonas putida F1 hypothetical protein YP_001267604.1 2594722 D 351746 CDS YP_001267605.1 148547503 5192714 2600578..2602554 1 NC_009512.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 2602554 5192714 Pput_2282 Pseudomonas putida F1 hypothetical protein YP_001267605.1 2600578 D 351746 CDS YP_001267606.1 148547504 5192715 2602551..2603207 1 NC_009512.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2603207 5192715 Pput_2283 Pseudomonas putida F1 electron transport protein SCO1/SenC YP_001267606.1 2602551 D 351746 CDS YP_001267607.1 148547505 5192858 2603204..2603869 1 NC_009512.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2603869 5192858 Pput_2284 Pseudomonas putida F1 electron transport protein SCO1/SenC YP_001267607.1 2603204 D 351746 CDS YP_001267608.1 148547506 5192859 2603875..2605554 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 2605554 5192859 Pput_2285 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001267608.1 2603875 D 351746 CDS YP_001267609.1 148547507 5190951 2605567..2606208 1 NC_009512.1 PFAM: SurA N-terminal domain; SurA domain-containing protein 2606208 5190951 Pput_2286 Pseudomonas putida F1 SurA domain-containing protein YP_001267609.1 2605567 D 351746 CDS YP_001267610.1 148547508 5190952 2606461..2606991 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 2606991 5190952 Pput_2287 Pseudomonas putida F1 response regulator receiver protein YP_001267610.1 2606461 D 351746 CDS YP_001267611.1 148547509 5193434 2607052..2608848 1 NC_009512.1 PFAM: type II secretion system protein E; type II secretion system protein E 2608848 5193434 Pput_2288 Pseudomonas putida F1 type II secretion system protein E YP_001267611.1 2607052 D 351746 CDS YP_001267612.1 148547510 5193435 2608832..2609611 1 NC_009512.1 hypothetical protein 2609611 5193435 Pput_2289 Pseudomonas putida F1 hypothetical protein YP_001267612.1 2608832 D 351746 CDS YP_001267613.1 148547511 5191225 2609613..2610155 1 NC_009512.1 hypothetical protein 2610155 5191225 Pput_2290 Pseudomonas putida F1 hypothetical protein YP_001267613.1 2609613 D 351746 CDS YP_001267614.1 148547512 5191226 2610142..2610705 1 NC_009512.1 hypothetical protein 2610705 5191226 Pput_2291 Pseudomonas putida F1 hypothetical protein YP_001267614.1 2610142 D 351746 CDS YP_001267615.1 148547513 5195099 2610705..2611211 1 NC_009512.1 hypothetical protein 2611211 5195099 Pput_2292 Pseudomonas putida F1 hypothetical protein YP_001267615.1 2610705 D 351746 CDS YP_001267616.1 148547514 5195100 2611208..2613073 1 NC_009512.1 PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; Tetratricopeptide TPR_2 repeat protein; type II and III secretion system protein 2613073 5195100 Pput_2293 Pseudomonas putida F1 type II and III secretion system protein YP_001267616.1 2611208 D 351746 CDS YP_001267617.1 148547515 5192520 2613070..2613549 1 NC_009512.1 Type II secretory pathway pseudopilin PulG-like protein 2613549 5192520 Pput_2294 Pseudomonas putida F1 Type II secretory pathway pseudopilin PulG-like protein YP_001267617.1 2613070 D 351746 CDS YP_001267618.1 148547516 5192521 2613555..2613929 1 NC_009512.1 PFAM: type II secretion system protein G; type II secretion system protein G 2613929 5192521 Pput_2295 Pseudomonas putida F1 type II secretion system protein G YP_001267618.1 2613555 D 351746 CDS YP_001267619.1 148547517 5195003 2613904..2614431 1 NC_009512.1 hypothetical protein 2614431 5195003 Pput_2296 Pseudomonas putida F1 hypothetical protein YP_001267619.1 2613904 D 351746 CDS YP_001267620.1 148547518 5195004 2614428..2614829 1 NC_009512.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2614829 5195004 Pput_2297 Pseudomonas putida F1 curli assembly protein CsgE YP_001267620.1 2614428 D 351746 CDS YP_001267621.1 148547519 5195080 2614826..2615239 1 NC_009512.1 hypothetical protein 2615239 5195080 Pput_2298 Pseudomonas putida F1 hypothetical protein YP_001267621.1 2614826 D 351746 CDS YP_001267622.1 148547520 5195081 2615274..2616125 1 NC_009512.1 PFAM: Curli production assembly/transport component CsgG; curli production assembly/transport protein CsgG 2616125 5195081 Pput_2299 Pseudomonas putida F1 curli production assembly/transport protein CsgG YP_001267622.1 2615274 D 351746 CDS YP_001267623.1 148547521 5190526 2616194..2616430 1 NC_009512.1 hypothetical protein 2616430 5190526 Pput_2300 Pseudomonas putida F1 hypothetical protein YP_001267623.1 2616194 D 351746 CDS YP_001267624.1 148547522 5190527 2616773..2618683 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: PAS domain containing protein; AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 2618683 5190527 Pput_2301 Pseudomonas putida F1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001267624.1 2616773 D 351746 CDS YP_001267625.1 148547523 5193970 2618685..2620418 1 NC_009512.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2620418 5193970 Pput_2302 Pseudomonas putida F1 ABC transporter-like protein YP_001267625.1 2618685 D 351746 CDS YP_001267626.1 148547524 5193971 2620408..2621085 1 NC_009512.1 hypothetical protein 2621085 5193971 Pput_2303 Pseudomonas putida F1 hypothetical protein YP_001267626.1 2620408 D 351746 CDS YP_001267627.1 148547525 5190596 2621078..2622370 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase 2622370 5190596 Pput_2304 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001267627.1 2621078 D 351746 CDS YP_001267628.1 148547526 5190597 complement(2622592..2623905) 1 NC_009512.1 hypothetical protein 2623905 5190597 Pput_2305 Pseudomonas putida F1 hypothetical protein YP_001267628.1 2622592 R 351746 CDS YP_001267629.1 148547527 5191977 complement(2624045..2625538) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2625538 5191977 Pput_2306 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267629.1 2624045 R 351746 CDS YP_001267630.1 148547528 5191978 2625879..2627507 1 NC_009512.1 PFAM: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; hypothetical protein 2627507 5191978 Pput_2307 Pseudomonas putida F1 hypothetical protein YP_001267630.1 2625879 D 351746 CDS YP_001267631.1 148547529 5190677 2627556..2628986 1 NC_009512.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 2628986 5190677 Pput_2308 Pseudomonas putida F1 radical SAM domain-containing protein YP_001267631.1 2627556 D 351746 CDS YP_001267632.1 148547530 5190678 2628988..2629311 1 NC_009512.1 PFAM: Quinohemoprotein amine dehydrogenase, gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma 2629311 5190678 Pput_2309 Pseudomonas putida F1 quinohemoprotein amine dehydrogenase subunit gamma YP_001267632.1 2628988 D 351746 CDS YP_001267633.1 148547531 5191004 2629343..2630464 1 NC_009512.1 hypothetical protein 2630464 5191004 Pput_2310 Pseudomonas putida F1 hypothetical protein YP_001267633.1 2629343 D 351746 CDS YP_001267634.1 148547532 5191005 2630599..2632272 1 NC_009512.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2632272 5191005 Pput_2311 Pseudomonas putida F1 acyl-CoA synthetase YP_001267634.1 2630599 D 351746 CDS YP_001267635.1 148547533 5193486 complement(2632407..2632982) 1 NC_009512.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2632982 mobA 5193486 mobA Pseudomonas putida F1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001267635.1 2632407 R 351746 CDS YP_001267636.1 148547534 5193487 complement(2633044..2636172) 1 NC_009512.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2636172 5193487 Pput_2313 Pseudomonas putida F1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001267636.1 2633044 R 351746 CDS YP_001267637.1 148547535 5191562 complement(2636184..2637359) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2637359 5191562 Pput_2314 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001267637.1 2636184 R 351746 CDS YP_001267638.1 148547536 5191563 2637605..2638306 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2638306 5191563 Pput_2315 Pseudomonas putida F1 two component transcriptional regulator YP_001267638.1 2637605 D 351746 CDS YP_001267639.1 148547537 5193086 2638313..2639611 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2639611 5193086 Pput_2316 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001267639.1 2638313 D 351746 CDS YP_001267640.1 148547538 5193087 2639855..2640286 1 NC_009512.1 PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 2640286 5193087 Pput_2317 Pseudomonas putida F1 transmembrane pair domain-containing protein YP_001267640.1 2639855 D 351746 CDS YP_001267641.1 148547539 5195455 2640467..2642026 1 NC_009512.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 2642026 5195455 Pput_2318 Pseudomonas putida F1 threonine dehydratase YP_001267641.1 2640467 D 351746 CDS YP_001267642.1 148547540 5195456 complement(2642153..2643334) 1 NC_009512.1 hypothetical protein 2643334 5195456 Pput_2319 Pseudomonas putida F1 hypothetical protein YP_001267642.1 2642153 R 351746 CDS YP_001267643.1 148547541 5193374 complement(2643386..2643865) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2643865 5193374 Pput_2320 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001267643.1 2643386 R 351746 CDS YP_001267644.1 148547542 5193375 complement(2643976..2645595) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2645595 5193375 Pput_2321 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267644.1 2643976 R 351746 CDS YP_001267645.1 148547543 5194158 2646137..2647201 1 NC_009512.1 hypothetical protein 2647201 5194158 Pput_2322 Pseudomonas putida F1 hypothetical protein YP_001267645.1 2646137 D 351746 CDS YP_001267646.1 148547544 5194159 2647431..2648549 1 NC_009512.1 hypothetical protein 2648549 5194159 Pput_2323 Pseudomonas putida F1 hypothetical protein YP_001267646.1 2647431 D 351746 CDS YP_001267647.1 148547545 5192210 2648597..2649445 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 2649445 5192210 Pput_2324 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267647.1 2648597 D 351746 CDS YP_001267648.1 148547546 5192211 complement(2649410..2650057) 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2650057 5192211 Pput_2325 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267648.1 2649410 R 351746 CDS YP_001267649.1 148547547 5193110 2650283..2651854 1 NC_009512.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; integral membrane protein TerC 2651854 5193110 Pput_2326 Pseudomonas putida F1 integral membrane protein TerC YP_001267649.1 2650283 D 351746 CDS YP_001267650.1 148547548 5193111 complement(2651817..2652704) 1 NC_009512.1 TIGRFAM: RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 2652704 5193111 Pput_2327 Pseudomonas putida F1 transporter DMT superfamily protein YP_001267650.1 2651817 R 351746 CDS YP_001267651.1 148547549 5190403 complement(2652738..2654324) 1 NC_009512.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 2654324 5190403 Pput_2328 Pseudomonas putida F1 diguanylate phosphodiesterase YP_001267651.1 2652738 R 351746 CDS YP_001267652.1 148547550 5190404 2654623..2655699 1 NC_009512.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2655699 5190404 Pput_2329 Pseudomonas putida F1 4-hydroxyphenylpyruvate dioxygenase YP_001267652.1 2654623 D 351746 CDS YP_001267653.1 148547551 5193370 complement(2655720..2656526) 1 NC_009512.1 hypothetical protein 2656526 5193370 Pput_2330 Pseudomonas putida F1 hypothetical protein YP_001267653.1 2655720 R 351746 CDS YP_001267654.1 148547552 5193371 complement(2656656..2657342) 1 NC_009512.1 PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 2657342 5193371 Pput_2331 Pseudomonas putida F1 ThiJ/PfpI domain-containing protein YP_001267654.1 2656656 R 351746 CDS YP_001267655.1 148547553 5190425 2657536..2659599 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2659599 5190425 Pput_2332 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001267655.1 2657536 D 351746 CDS YP_001267656.1 148547554 5190426 complement(2659606..2661222) 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase 2661222 5190426 Pput_2333 Pseudomonas putida F1 histidine kinase YP_001267656.1 2659606 R 351746 CDS YP_001267657.1 148547555 5190300 complement(2661301..2662500) 1 NC_009512.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 2662500 5190300 Pput_2334 Pseudomonas putida F1 hypothetical protein YP_001267657.1 2661301 R 351746 CDS YP_001267658.1 148547556 5190301 complement(2662581..2663996) 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2663996 5190301 Pput_2335 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001267658.1 2662581 R 351746 CDS YP_001267659.1 148547557 5192153 complement(2663993..2667172) 1 NC_009512.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2667172 5192153 Pput_2336 Pseudomonas putida F1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001267659.1 2663993 R 351746 CDS YP_001267660.1 148547558 5192154 complement(2667185..2668426) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2668426 5192154 Pput_2337 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001267660.1 2667185 R 351746 CDS YP_001267661.1 148547559 5193809 complement(2668616..2669806) 1 NC_009512.1 PFAM: type II secretion system protein; type II secretion system protein 2669806 5193809 Pput_2338 Pseudomonas putida F1 type II secretion system protein YP_001267661.1 2668616 R 351746 CDS YP_001267662.1 148547560 5193810 complement(2669818..2670243) 1 NC_009512.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 2670243 5193810 Pput_2339 Pseudomonas putida F1 general secretion pathway protein G YP_001267662.1 2669818 R 351746 CDS YP_001267663.1 148547561 5192321 2670366..2671022 1 NC_009512.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 2671022 5192321 Pput_2340 Pseudomonas putida F1 lytic transglycosylase subunit YP_001267663.1 2670366 D 351746 CDS YP_001267664.1 148547562 5192322 2671197..2672648 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2672648 5192322 Pput_2341 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001267664.1 2671197 D 351746 CDS YP_001267665.1 148547563 5194152 2672955..2674448 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2674448 5194152 Pput_2342 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001267665.1 2672955 D 351746 CDS YP_001267666.1 148547564 5194153 2674417..2675844 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 2675844 5194153 Pput_2343 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001267666.1 2674417 D 351746 CDS YP_001267667.1 148547565 5190772 complement(2675859..2676161) 1 NC_009512.1 hypothetical protein 2676161 5190772 Pput_2344 Pseudomonas putida F1 hypothetical protein YP_001267667.1 2675859 R 351746 CDS YP_001267668.1 148547566 5190773 complement(2676248..2677600) 1 NC_009512.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter 2677600 5190773 Pput_2345 Pseudomonas putida F1 gluconate transporter YP_001267668.1 2676248 R 351746 CDS YP_001267669.1 148547567 5191047 complement(2677712..2678251) 1 NC_009512.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; carbohydrate kinase 2678251 5191047 Pput_2346 Pseudomonas putida F1 carbohydrate kinase YP_001267669.1 2677712 R 351746 CDS YP_001267670.1 148547568 5191048 2678458..2679477 1 NC_009512.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 2679477 5191048 Pput_2347 Pseudomonas putida F1 LacI family transcriptional regulator YP_001267670.1 2678458 D 351746 CDS YP_001267671.1 148547569 5195157 2679691..2681013 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 2681013 5195157 Pput_2348 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001267671.1 2679691 D 351746 CDS YP_001267672.1 148547570 5195158 complement(2680979..2684260) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; Hpt sensor hybrid histidine kinase 2684260 5195158 Pput_2349 Pseudomonas putida F1 Hpt sensor hybrid histidine kinase YP_001267672.1 2680979 R 351746 CDS YP_001267673.1 148547571 5190812 complement(2684274..2684888) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2684888 5190812 Pput_2350 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001267673.1 2684274 R 351746 CDS YP_001267674.1 148547572 5190813 complement(2685110..2685352) 1 NC_009512.1 PFAM: protein of unknown function DUF1272; hypothetical protein 2685352 5190813 Pput_2351 Pseudomonas putida F1 hypothetical protein YP_001267674.1 2685110 R 351746 CDS YP_001267675.1 148547573 5193118 complement(2685419..2686171) 1 NC_009512.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 2686171 5193118 Pput_2352 Pseudomonas putida F1 precorrin-4 C(11)-methyltransferase YP_001267675.1 2685419 R 351746 CDS YP_001267676.1 148547574 5193119 complement(2686206..2686592) 1 NC_009512.1 hypothetical protein 2686592 5193119 Pput_2353 Pseudomonas putida F1 hypothetical protein YP_001267676.1 2686206 R 351746 CDS YP_001267677.1 148547575 5192078 complement(2686592..2687278) 1 NC_009512.1 TIGRFAM: cobalt transporter, subunit CbtA; cobalt transporter subunit CbtA 2687278 5192078 Pput_2354 Pseudomonas putida F1 cobalt transporter subunit CbtA YP_001267677.1 2686592 R 351746 CDS YP_001267678.1 148547576 5192079 complement(2687288..2687476) 1 NC_009512.1 TIGRFAM: cobalt transporter, subunit CbtB; cobalt transporter subunit CbtB 2687476 5192079 Pput_2355 Pseudomonas putida F1 cobalt transporter subunit CbtB YP_001267678.1 2687288 R 351746 CDS YP_001267679.1 148547577 5193446 complement(2687912..2688391) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2688391 5193446 Pput_2356 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267679.1 2687912 R 351746 CDS YP_001267680.1 148547578 5193447 2688515..2689144 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2689144 5193447 Pput_2357 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267680.1 2688515 D 351746 CDS YP_001267681.1 148547579 5192163 2689166..2690038 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2690038 5192163 Pput_2358 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001267681.1 2689166 D 351746 CDS YP_001267682.1 148547580 5192164 2690135..2691022 1 NC_009512.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein 2691022 5192164 Pput_2359 Pseudomonas putida F1 pirin domain-containing protein YP_001267682.1 2690135 D 351746 CDS YP_001267683.1 148547581 5192298 2691319..2691579 1 NC_009512.1 PFAM: protein of unknown function DUF1652; hypothetical protein 2691579 5192298 Pput_2360 Pseudomonas putida F1 hypothetical protein YP_001267683.1 2691319 D 351746 CDS YP_001267684.1 148547582 5192299 complement(2691600..2692214) 1 NC_009512.1 hypothetical protein 2692214 5192299 Pput_2361 Pseudomonas putida F1 hypothetical protein YP_001267684.1 2691600 R 351746 CDS YP_001267685.1 148547583 5190886 complement(2692301..2692588) 1 NC_009512.1 hypothetical protein 2692588 5190886 Pput_2362 Pseudomonas putida F1 hypothetical protein YP_001267685.1 2692301 R 351746 CDS YP_001267686.1 148547584 5190887 complement(2692758..2693435) 1 NC_009512.1 PFAM: 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 2693435 5190887 Pput_2363 Pseudomonas putida F1 2OG-Fe(II) oxygenase YP_001267686.1 2692758 R 351746 CDS YP_001267687.1 148547585 5195267 complement(2693564..2695060) 1 NC_009512.1 PFAM: Curlin associated repeat protein; curlin-associated protein 2695060 5195267 Pput_2364 Pseudomonas putida F1 curlin-associated protein YP_001267687.1 2693564 R 351746 CDS YP_001267688.1 148547586 5195268 complement(2695026..2695499) 1 NC_009512.1 PFAM: Curlin associated repeat protein; curlin-associated protein 2695499 5195268 Pput_2365 Pseudomonas putida F1 curlin-associated protein YP_001267688.1 2695026 R 351746 CDS YP_001267689.1 148547587 5191580 complement(2695515..2697746) 1 NC_009512.1 hypothetical protein 2697746 5191580 Pput_2366 Pseudomonas putida F1 hypothetical protein YP_001267689.1 2695515 R 351746 CDS YP_001267690.1 148547588 5191581 complement(2697779..2699107) 1 NC_009512.1 hypothetical protein 2699107 5191581 Pput_2367 Pseudomonas putida F1 hypothetical protein YP_001267690.1 2697779 R 351746 CDS YP_001267691.1 148547589 5190675 complement(2699368..2700489) 1 NC_009512.1 hypothetical protein 2700489 5190675 Pput_2368 Pseudomonas putida F1 hypothetical protein YP_001267691.1 2699368 R 351746 CDS YP_001267692.1 148547590 5190676 complement(2700489..2703161) 1 NC_009512.1 hypothetical protein 2703161 5190676 Pput_2369 Pseudomonas putida F1 hypothetical protein YP_001267692.1 2700489 R 351746 CDS YP_001267693.1 148547591 5190800 complement(2703176..2704054) 1 NC_009512.1 hypothetical protein 2704054 5190800 Pput_2370 Pseudomonas putida F1 hypothetical protein YP_001267693.1 2703176 R 351746 CDS YP_001267694.1 148547592 5190801 complement(2704054..2706231) 1 NC_009512.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 2706231 5190801 Pput_2371 Pseudomonas putida F1 Rhs element Vgr protein YP_001267694.1 2704054 R 351746 CDS YP_001267695.1 148547593 5191718 complement(2706245..2707093) 1 NC_009512.1 hypothetical protein 2707093 5191718 Pput_2372 Pseudomonas putida F1 hypothetical protein YP_001267695.1 2706245 R 351746 CDS YP_001267696.1 148547594 5191719 complement(2707376..2708143) 1 NC_009512.1 PAP2 (acid phosphatase) superfamily protein-like protein 2708143 5191719 Pput_2373 Pseudomonas putida F1 PAP2 (acid phosphatase) superfamily protein-like protein YP_001267696.1 2707376 R 351746 CDS YP_001267697.1 148547595 5193112 complement(2708146..2708835) 1 NC_009512.1 PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 2708835 5193112 Pput_2374 Pseudomonas putida F1 putative phosphohistidine phosphatase SixA YP_001267697.1 2708146 R 351746 CDS YP_001267698.1 148547596 5193113 2709114..2709860 1 NC_009512.1 gluconate 2-dehydrogenase 2709860 5193113 Pput_2375 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001267698.1 2709114 D 351746 CDS YP_001267699.1 148547597 5192124 2709864..2711648 1 NC_009512.1 PFAM: glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2711648 5192124 Pput_2376 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001267699.1 2709864 D 351746 CDS YP_001267700.1 148547598 5192125 2711655..2712908 1 NC_009512.1 PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 2712908 5192125 Pput_2377 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001267700.1 2711655 D 351746 CDS YP_001267701.1 148547599 5191454 2713175..2714194 1 NC_009512.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI 2714194 5191454 Pput_2378 Pseudomonas putida F1 regulatory protein LacI YP_001267701.1 2713175 D 351746 CDS YP_001267702.1 148547600 5191455 2714259..2715038 1 NC_009512.1 PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2715038 5191455 Pput_2379 Pseudomonas putida F1 xylose isomerase domain-containing protein YP_001267702.1 2714259 D 351746 CDS YP_001267703.1 148547601 5195064 2715031..2715981 1 NC_009512.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 2715981 5195064 Pput_2380 Pseudomonas putida F1 ribokinase-like domain-containing protein YP_001267703.1 2715031 D 351746 CDS YP_001267704.1 148547602 5195065 2715944..2717332 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2717332 5195065 Pput_2381 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267704.1 2715944 D 351746 CDS YP_001267705.1 148547603 5190734 2717343..2718305 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; gluconate 2-dehydrogenase 2718305 5190734 Pput_2382 Pseudomonas putida F1 gluconate 2-dehydrogenase YP_001267705.1 2717343 D 351746 CDS YP_001267706.1 148547604 5190735 complement(2718348..2719313) 1 NC_009512.1 PFAM: Endonuclease I; deoxyribonuclease I 2719313 5190735 Pput_2383 Pseudomonas putida F1 deoxyribonuclease I YP_001267706.1 2718348 R 351746 CDS YP_001267707.1 148547605 5195354 complement(2719328..2719711) 1 NC_009512.1 hypothetical protein 2719711 5195354 Pput_2384 Pseudomonas putida F1 hypothetical protein YP_001267707.1 2719328 R 351746 CDS YP_001267708.1 148547606 5195355 complement(2719842..2722205) 1 NC_009512.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 2722205 5195355 Pput_2385 Pseudomonas putida F1 surface antigen (D15) YP_001267708.1 2719842 R 351746 CDS YP_001267709.1 148547607 5193752 2722342..2723103 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2723103 5193752 Pput_2386 Pseudomonas putida F1 two component transcriptional regulator YP_001267709.1 2722342 D 351746 CDS YP_001267710.1 148547608 5193753 2723100..2724362 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2724362 5193753 Pput_2387 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001267710.1 2723100 D 351746 CDS YP_001267711.1 148547609 5193006 complement(2724355..2725350) 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 2725350 5193006 Pput_2388 Pseudomonas putida F1 aldo/keto reductase YP_001267711.1 2724355 R 351746 CDS YP_001267712.1 148547610 5193007 complement(2725447..2726298) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2726298 5193007 Pput_2389 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267712.1 2725447 R 351746 CDS YP_001267713.1 148547611 5194978 complement(2726361..2727545) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2727545 5194978 Pput_2390 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267713.1 2726361 R 351746 CDS YP_001267714.1 148547612 5194979 2727813..2728472 1 NC_009512.1 alpha/beta fold family hydrolase-like protein 2728472 5194979 Pput_2391 Pseudomonas putida F1 alpha/beta fold family hydrolase-like protein YP_001267714.1 2727813 D 351746 CDS YP_001267715.1 148547613 5192790 complement(2728457..2729338) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2729338 5192790 Pput_2392 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267715.1 2728457 R 351746 CDS YP_001267716.1 148547614 5192791 2729524..2731167 1 NC_009512.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2731167 5192791 Pput_2393 Pseudomonas putida F1 acetolactate synthase YP_001267716.1 2729524 D 351746 CDS YP_001267717.1 148547615 5195274 complement(2731294..2733837) 1 NC_009512.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome, central region domain protein; PAS fold-2 domain protein; putative GAF sensor protein 2733837 5195274 Pput_2394 Pseudomonas putida F1 putative GAF sensor protein YP_001267717.1 2731294 R 351746 CDS YP_001267718.1 148547616 5195275 2734064..2734681 1 NC_009512.1 hypothetical protein 2734681 5195275 Pput_2395 Pseudomonas putida F1 hypothetical protein YP_001267718.1 2734064 D 351746 CDS YP_001267719.1 148547617 5194876 complement(2734722..2735162) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2735162 5194876 Pput_2396 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001267719.1 2734722 R 351746 CDS YP_001267720.1 148547618 5194877 2735306..2738353 1 NC_009512.1 PFAM: aminoglycoside phosphotransferase; peptidase M23B; aminotransferase class-III; hypothetical protein 2738353 5194877 Pput_2397 Pseudomonas putida F1 hypothetical protein YP_001267720.1 2735306 D 351746 CDS YP_001267721.1 148547619 5192585 complement(2738432..2739556) 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2739556 5192585 Pput_2398 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001267721.1 2738432 R 351746 CDS YP_001267722.1 148547620 5192586 complement(2739655..2740125) 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2740125 5192586 Pput_2399 Pseudomonas putida F1 MarR family transcriptional regulator YP_001267722.1 2739655 R 351746 CDS YP_001267723.1 148547621 5194634 2740323..2741153 1 NC_009512.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 2741153 5194634 Pput_2400 Pseudomonas putida F1 p-hydroxycinnamoyl CoA hydratase/lyase YP_001267723.1 2740323 D 351746 CDS YP_001267724.1 148547622 5194635 2741229..2742677 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2742677 5194635 Pput_2401 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267724.1 2741229 D 351746 CDS YP_001267725.1 148547623 5194504 2742705..2744651 1 NC_009512.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2744651 5194504 Pput_2402 Pseudomonas putida F1 feruloyl-CoA synthase YP_001267725.1 2742705 D 351746 CDS YP_001267726.1 148547624 5194505 2744648..2745889 1 NC_009512.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2745889 5194505 Pput_2403 Pseudomonas putida F1 acetyl-CoA acetyltransferase YP_001267726.1 2744648 D 351746 CDS YP_001267727.1 148547625 5194512 2745904..2747649 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2747649 5194512 Pput_2404 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267727.1 2745904 D 351746 CDS YP_001267728.1 148547626 5194513 complement(2747630..2748655) 1 NC_009512.1 PFAM: protein of unknown function DUF323; hypothetical protein 2748655 5194513 Pput_2405 Pseudomonas putida F1 hypothetical protein YP_001267728.1 2747630 R 351746 CDS YP_001267729.1 148547627 5194921 complement(2748652..2750256) 1 NC_009512.1 PFAM: sulfatase; sulfatase 2750256 5194921 Pput_2406 Pseudomonas putida F1 sulfatase YP_001267729.1 2748652 R 351746 CDS YP_001267730.1 148547628 5194922 2750578..2751969 1 NC_009512.1 hypothetical protein 2751969 5194922 Pput_2407 Pseudomonas putida F1 hypothetical protein YP_001267730.1 2750578 D 351746 CDS YP_001267731.1 148547629 5195214 2752004..2753245 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; putative 3-hydroxyphenylpropionic transporter MhpT 2753245 5195214 Pput_2408 Pseudomonas putida F1 putative 3-hydroxyphenylpropionic transporter MhpT YP_001267731.1 2752004 D 351746 CDS YP_001267732.1 148547630 5195215 complement(2753262..2754407) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2754407 5195215 Pput_2409 Pseudomonas putida F1 diguanylate cyclase YP_001267732.1 2753262 R 351746 CDS YP_001267733.1 148547631 5193092 complement(2754798..2756849) 1 NC_009512.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 2756849 5193092 Pput_2410 Pseudomonas putida F1 TonB-dependent receptor YP_001267733.1 2754798 R 351746 CDS YP_001267734.1 148547632 5193093 complement(2757094..2757306) 1 NC_009512.1 hypothetical protein 2757306 5193093 Pput_2411 Pseudomonas putida F1 hypothetical protein YP_001267734.1 2757094 R 351746 CDS YP_001267735.1 148547633 5194012 complement(2757367..2759520) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2759520 5194012 Pput_2412 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267735.1 2757367 R 351746 CDS YP_001267736.1 148547634 5194013 complement(2759592..2759981) 1 NC_009512.1 hypothetical protein 2759981 5194013 Pput_2413 Pseudomonas putida F1 hypothetical protein YP_001267736.1 2759592 R 351746 CDS YP_001267737.1 148547635 5193059 complement(2760384..2761277) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2761277 5193059 Pput_2414 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267737.1 2760384 R 351746 CDS YP_001267738.1 148547636 5193060 2761379..2761792 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2761792 5193060 Pput_2415 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001267738.1 2761379 D 351746 CDS YP_001267739.1 148547637 5195090 2761950..2763266 1 NC_009512.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2763266 5195090 Pput_2416 Pseudomonas putida F1 sodium:dicarboxylate symporter YP_001267739.1 2761950 D 351746 CDS YP_001267740.1 148547638 5192126 complement(2763469..2764191) 1 NC_009512.1 hypothetical protein 2764191 5192126 Pput_2418 Pseudomonas putida F1 hypothetical protein YP_001267740.1 2763469 R 351746 CDS YP_001267741.1 148547639 5195435 complement(2764206..2766296) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2766296 5195435 Pput_2419 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267741.1 2764206 R 351746 CDS YP_001267742.1 148547640 5195436 complement(2766583..2767530) 1 NC_009512.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 2767530 5195436 Pput_2420 Pseudomonas putida F1 putative GTP cyclohydrolase YP_001267742.1 2766583 R 351746 CDS YP_001267743.1 148547641 5190935 complement(2768033..2769283) 1 NC_009512.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 2769283 5190935 Pput_2421 Pseudomonas putida F1 Bcr/CflA subfamily drug resistance transporter YP_001267743.1 2768033 R 351746 CDS YP_001267744.1 148547642 5190936 complement(2769280..2770572) 1 NC_009512.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 2770572 5190936 Pput_2422 Pseudomonas putida F1 3-oxoacyl-(acyl carrier protein) synthase II YP_001267744.1 2769280 R 351746 CDS YP_001267745.1 148547643 5195259 complement(2770645..2773737) 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2773737 5195259 Pput_2423 Pseudomonas putida F1 acriflavin resistance protein YP_001267745.1 2770645 R 351746 CDS YP_001267746.1 148547644 5195260 complement(2773734..2774837) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2774837 5195260 Pput_2424 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001267746.1 2773734 R 351746 CDS YP_001267747.1 148547645 5191298 complement(2774915..2775529) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2775529 5191298 Pput_2425 Pseudomonas putida F1 TetR family transcriptional regulator YP_001267747.1 2774915 R 351746 CDS YP_001267748.1 148547646 5191299 2775611..2777074 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2777074 5191299 Pput_2426 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001267748.1 2775611 D 351746 CDS YP_001267749.1 148547647 5191533 complement(2777193..2778521) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2778521 5191533 Pput_2427 Pseudomonas putida F1 short chain dehydrogenase YP_001267749.1 2777193 R 351746 CDS YP_001267750.1 148547648 5191534 complement(2778557..2778790) 1 NC_009512.1 hypothetical protein 2778790 5191534 Pput_2428 Pseudomonas putida F1 hypothetical protein YP_001267750.1 2778557 R 351746 CDS YP_001267751.1 148547649 5193842 complement(2778809..2780011) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2780011 5193842 Pput_2429 Pseudomonas putida F1 alcohol dehydrogenase YP_001267751.1 2778809 R 351746 CDS YP_001267752.1 148547650 5193843 complement(2780089..2780445) 1 NC_009512.1 hypothetical protein 2780445 5193843 Pput_2430 Pseudomonas putida F1 hypothetical protein YP_001267752.1 2780089 R 351746 CDS YP_001267753.1 148547651 5191500 complement(2780701..2781204) 1 NC_009512.1 PFAM: CinA domain protein; CinA domain-containing protein 2781204 5191500 Pput_2431 Pseudomonas putida F1 CinA domain-containing protein YP_001267753.1 2780701 R 351746 CDS YP_001267754.1 148547652 5191501 2781410..2781568 1 NC_009512.1 hypothetical protein 2781568 5191501 Pput_2432 Pseudomonas putida F1 hypothetical protein YP_001267754.1 2781410 D 351746 CDS YP_001267755.1 148547653 5194576 complement(2782036..2784234) 1 NC_009512.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 2784234 5194576 Pput_2433 Pseudomonas putida F1 aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit YP_001267755.1 2782036 R 351746 CDS YP_001267756.1 148547654 5194577 complement(2784231..2785232) 1 NC_009512.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase 2785232 5194577 Pput_2434 Pseudomonas putida F1 molybdopterin dehydrogenase YP_001267756.1 2784231 R 351746 CDS YP_001267757.1 148547655 5191092 complement(2785229..2785756) 1 NC_009512.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2785756 5191092 Pput_2435 Pseudomonas putida F1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001267757.1 2785229 R 351746 CDS YP_001267758.1 148547656 5191093 complement(2785855..2787642) 1 NC_009512.1 catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 2787642 5191093 Pput_2436 Pseudomonas putida F1 thiamine pyrophosphate protein YP_001267758.1 2785855 R 351746 CDS YP_001267759.1 148547657 5191884 2787791..2788309 1 NC_009512.1 double-stranded beta helix domain-containing protein 2788309 5191884 Pput_2437 Pseudomonas putida F1 double-stranded beta helix domain-containing protein YP_001267759.1 2787791 D 351746 CDS YP_001267760.1 148547658 5191885 complement(2788352..2788732) 1 NC_009512.1 hypothetical protein 2788732 5191885 Pput_2438 Pseudomonas putida F1 hypothetical protein YP_001267760.1 2788352 R 351746 CDS YP_001267761.1 148547659 5191882 complement(2788833..2789351) 1 NC_009512.1 hypothetical protein 2789351 5191882 Pput_2439 Pseudomonas putida F1 hypothetical protein YP_001267761.1 2788833 R 351746 CDS YP_001267762.1 148547660 5191883 2789554..2790537 1 NC_009512.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 2790537 5191883 Pput_2440 Pseudomonas putida F1 integral membrane protein TerC YP_001267762.1 2789554 D 351746 CDS YP_001267763.1 148547661 5192127 2790861..2791274 1 NC_009512.1 PFAM: Class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 2791274 5192127 Pput_2442 Pseudomonas putida F1 peptidyl-tRNA hydrolase domain-containing protein YP_001267763.1 2790861 D 351746 CDS YP_001267764.1 148547662 5194931 2791533..2791895 1 NC_009512.1 hypothetical protein 2791895 5194931 Pput_2443 Pseudomonas putida F1 hypothetical protein YP_001267764.1 2791533 D 351746 CDS YP_001267765.1 148547663 5192740 complement(2792121..2793029) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2793029 5192740 Pput_2444 Pseudomonas putida F1 extracellular solute-binding protein YP_001267765.1 2792121 R 351746 CDS YP_001267766.1 148547664 5192741 complement(2793078..2794418) 1 NC_009512.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 2794418 potE 5192741 potE Pseudomonas putida F1 putrescine transporter YP_001267766.1 2793078 R 351746 CDS YP_001267767.1 148547665 5191446 complement(2796419..2796847) 1 NC_009512.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 2796847 5191446 Pput_2447 Pseudomonas putida F1 hypothetical protein YP_001267767.1 2796419 R 351746 CDS YP_001267768.1 148547666 5191517 complement(2796849..2797604) 1 NC_009512.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 2797604 5191517 Pput_2448 Pseudomonas putida F1 hypothetical protein YP_001267768.1 2796849 R 351746 CDS YP_001267769.1 148547667 5192012 complement(2797716..2798897) 1 NC_009512.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 2798897 5192012 Pput_2449 Pseudomonas putida F1 sodium/hydrogen exchanger YP_001267769.1 2797716 R 351746 CDS YP_001267770.1 148547668 5192013 2799213..2799785 1 NC_009512.1 PFAM: phosphoribosyltransferase; phosphoribosyltransferase 2799785 5192013 Pput_2450 Pseudomonas putida F1 phosphoribosyltransferase YP_001267770.1 2799213 D 351746 CDS YP_001267771.1 148547669 5194055 complement(2799787..2800665) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2800665 5194055 Pput_2451 Pseudomonas putida F1 UspA domain-containing protein YP_001267771.1 2799787 R 351746 CDS YP_001267772.1 148547670 5191447 complement(2800884..2801774) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2801774 5191447 Pput_2453 Pseudomonas putida F1 UspA domain-containing protein YP_001267772.1 2800884 R 351746 CDS YP_001267773.1 148547671 5194442 complement(2801936..2804218) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; Hemerythrin HHE cation binding domain protein; heavy metal translocating P-type ATPase 2804218 5194442 Pput_2454 Pseudomonas putida F1 heavy metal translocating P-type ATPase YP_001267773.1 2801936 R 351746 CDS YP_001267774.1 148547672 5194443 complement(2804225..2804479) 1 NC_009512.1 hypothetical protein 2804479 5194443 Pput_2455 Pseudomonas putida F1 hypothetical protein YP_001267774.1 2804225 R 351746 CDS YP_001267775.1 148547673 5194846 2804668..2805315 1 NC_009512.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 2805315 5194846 Pput_2456 Pseudomonas putida F1 transport-associated protein YP_001267775.1 2804668 D 351746 CDS YP_001267776.1 148547674 5194847 2805336..2807183 1 NC_009512.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2807183 5194847 Pput_2457 Pseudomonas putida F1 ATP-dependent metalloprotease FtsH YP_001267776.1 2805336 D 351746 CDS YP_001267777.1 148547675 5194716 2807212..2807637 1 NC_009512.1 PFAM: Ion transport 2 domain protein; Ion transport 2 domain-containing protein 2807637 5194716 Pput_2458 Pseudomonas putida F1 Ion transport 2 domain-containing protein YP_001267777.1 2807212 D 351746 CDS YP_001267778.1 148547676 5194717 complement(2807645..2810020) 1 NC_009512.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; putative phosphoketolase 2810020 5194717 Pput_2459 Pseudomonas putida F1 putative phosphoketolase YP_001267778.1 2807645 R 351746 CDS YP_001267779.1 148547677 5195122 complement(2810350..2810910) 1 NC_009512.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 2810910 5195122 Pput_2460 Pseudomonas putida F1 heat shock protein Hsp20 YP_001267779.1 2810350 R 351746 CDS YP_001267780.1 148547678 5195123 2811101..2811835 1 NC_009512.1 hypothetical protein 2811835 5195123 Pput_2461 Pseudomonas putida F1 hypothetical protein YP_001267780.1 2811101 D 351746 CDS YP_001267781.1 148547679 5191110 complement(2811804..2812535) 1 NC_009512.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2812535 5191110 Pput_2462 Pseudomonas putida F1 CRP/FNR family transcriptional regulator YP_001267781.1 2811804 R 351746 CDS YP_001267782.1 148547680 5191111 2812760..2813329 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2813329 5191111 Pput_2463 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267782.1 2812760 D 351746 CDS YP_001267783.1 148547681 5194338 2813389..2814756 1 NC_009512.1 PFAM: Erythromycin esterase; erythromycin esterase 2814756 5194338 Pput_2464 Pseudomonas putida F1 erythromycin esterase YP_001267783.1 2813389 D 351746 CDS YP_001267784.1 148547682 5194339 complement(2814804..2815496) 1 NC_009512.1 PFAM: phosphoribosyltransferase; phosphoribosyltransferase 2815496 5194339 Pput_2465 Pseudomonas putida F1 phosphoribosyltransferase YP_001267784.1 2814804 R 351746 CDS YP_001267785.1 148547683 5194516 complement(2815560..2816204) 1 NC_009512.1 hypothetical protein 2816204 5194516 Pput_2466 Pseudomonas putida F1 hypothetical protein YP_001267785.1 2815560 R 351746 CDS YP_001267786.1 148547684 5194517 complement(2816225..2817592) 1 NC_009512.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 2817592 5194517 Pput_2467 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001267786.1 2816225 R 351746 CDS YP_001267787.1 148547685 5193502 complement(2817583..2818509) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2818509 5193502 Pput_2468 Pseudomonas putida F1 UspA domain-containing protein YP_001267787.1 2817583 R 351746 CDS YP_001267788.1 148547686 5193503 2818692..2819240 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2819240 5193503 Pput_2469 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267788.1 2818692 D 351746 CDS YP_001267789.1 148547687 5192459 complement(2819270..2820196) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2820196 5192459 Pput_2470 Pseudomonas putida F1 UspA domain-containing protein YP_001267789.1 2819270 R 351746 CDS YP_001267790.1 148547688 5192460 2820736..2821557 1 NC_009512.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2821557 5192460 Pput_2471 Pseudomonas putida F1 CRP/FNR family transcriptional regulator YP_001267790.1 2820736 D 351746 CDS YP_001267791.1 148547689 5192300 2821542..2822780 1 NC_009512.1 hypothetical protein 2822780 5192300 Pput_2472 Pseudomonas putida F1 hypothetical protein YP_001267791.1 2821542 D 351746 CDS YP_001267792.1 148547690 5192301 complement(2822820..2823824) 1 NC_009512.1 TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; PaaX family transcriptional regulator 2823824 5192301 Pput_2473 Pseudomonas putida F1 PaaX family transcriptional regulator YP_001267792.1 2822820 R 351746 CDS YP_001267793.1 148547691 5191250 complement(2823821..2824420) 1 NC_009512.1 TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; phenylacetic acid degradation protein PaaY 2824420 5191250 Pput_2474 Pseudomonas putida F1 phenylacetic acid degradation protein PaaY YP_001267793.1 2823821 R 351746 CDS YP_001267794.1 148547692 5191251 2824767..2825540 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase-isomerase 2825540 5191251 Pput_2475 Pseudomonas putida F1 enoyl-CoA hydratase-isomerase YP_001267794.1 2824767 D 351746 CDS YP_001267795.1 148547693 5193472 2825575..2826366 1 NC_009512.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2826366 5193472 Pput_2476 Pseudomonas putida F1 enoyl-CoA hydratase YP_001267795.1 2825575 D 351746 CDS YP_001267796.1 148547694 5193473 2826368..2827885 1 NC_009512.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2827885 5193473 Pput_2477 Pseudomonas putida F1 3-hydroxyacyl-CoA dehydrogenase YP_001267796.1 2826368 D 351746 CDS YP_001267797.1 148547695 5192182 2827878..2828318 1 NC_009512.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; phenylacetic acid degradation protein PaaD 2828318 5192182 Pput_2478 Pseudomonas putida F1 phenylacetic acid degradation protein PaaD YP_001267797.1 2827878 D 351746 CDS YP_001267798.1 148547696 5192183 2828311..2829531 1 NC_009512.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2829531 5192183 Pput_2479 Pseudomonas putida F1 beta-ketoadipyl CoA thiolase YP_001267798.1 2828311 D 351746 CDS YP_001267799.1 148547697 5190528 2829653..2830972 1 NC_009512.1 TIGRFAM: phenylacetate-CoA ligase; phenylacetate-CoA ligase 2830972 5190528 Pput_2480 Pseudomonas putida F1 phenylacetate-CoA ligase YP_001267799.1 2829653 D 351746 CDS YP_001267800.1 148547698 5190529 2831199..2832188 1 NC_009512.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2832188 paaA 5190529 paaA Pseudomonas putida F1 phenylacetate-CoA oxygenase subunit PaaA YP_001267800.1 2831199 D 351746 CDS YP_001267801.1 148547699 5190481 2832214..2832495 1 NC_009512.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2832495 paaB 5190481 paaB Pseudomonas putida F1 phenylacetate-CoA oxygenase subunit PaaB YP_001267801.1 2832214 D 351746 CDS YP_001267802.1 148547700 5190482 2832504..2833262 1 NC_009512.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaI 2833262 5190482 Pput_2483 Pseudomonas putida F1 phenylacetate-CoA oxygenase subunit PaaI YP_001267802.1 2832504 D 351746 CDS YP_001267803.1 148547701 5190407 2833249..2833782 1 NC_009512.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; phenylacetate-CoA oxygenase subunit PaaJ 2833782 5190407 Pput_2484 Pseudomonas putida F1 phenylacetate-CoA oxygenase subunit PaaJ YP_001267803.1 2833249 D 351746 CDS YP_001267804.1 148547702 5190408 2833798..2834874 1 NC_009512.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 2834874 5190408 Pput_2485 Pseudomonas putida F1 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_001267804.1 2833798 D 351746 CDS YP_001267805.1 148547703 5195557 2835016..2835324 1 NC_009512.1 PFAM: protein of unknown function DUF485; hypothetical protein 2835324 5195557 Pput_2486 Pseudomonas putida F1 hypothetical protein YP_001267805.1 2835016 D 351746 CDS YP_001267806.1 148547704 5195558 2835321..2836883 1 NC_009512.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2836883 5195558 Pput_2487 Pseudomonas putida F1 acetate permease YP_001267806.1 2835321 D 351746 CDS YP_001267807.1 148547705 5191769 2836923..2838155 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2838155 5191769 Pput_2488 Pseudomonas putida F1 outer membrane porin YP_001267807.1 2836923 D 351746 CDS YP_001267808.1 148547706 5191770 2838193..2840247 1 NC_009512.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2840247 5191770 Pput_2489 Pseudomonas putida F1 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_001267808.1 2838193 D 351746 CDS YP_001267809.1 148547707 5191264 complement(2840742..2841011) 1 NC_009512.1 hypothetical protein 2841011 5191264 Pput_2490 Pseudomonas putida F1 hypothetical protein YP_001267809.1 2840742 R 351746 CDS YP_001267810.1 148547708 5191265 complement(2841178..2841387) 1 NC_009512.1 hypothetical protein 2841387 5191265 Pput_2491 Pseudomonas putida F1 hypothetical protein YP_001267810.1 2841178 R 351746 CDS YP_001267811.1 148547709 5192883 2841623..2842021 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2842021 5192883 Pput_2492 Pseudomonas putida F1 NUDIX hydrolase YP_001267811.1 2841623 D 351746 CDS YP_001267812.1 148547710 5192884 complement(2842023..2842574) 1 NC_009512.1 PFAM: peptidase S14, ClpP; peptidase S14, ClpP 2842574 5192884 Pput_2493 Pseudomonas putida F1 peptidase S14, ClpP YP_001267812.1 2842023 R 351746 CDS YP_001267813.1 148547711 5195536 2842834..2843751 1 NC_009512.1 PFAM: protein of unknown function DUF72; hypothetical protein 2843751 5195536 Pput_2494 Pseudomonas putida F1 hypothetical protein YP_001267813.1 2842834 D 351746 CDS YP_001267814.1 148547712 5195537 2843748..2844521 1 NC_009512.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2844521 5195537 Pput_2495 Pseudomonas putida F1 endonuclease/exonuclease/phosphatase YP_001267814.1 2843748 D 351746 CDS YP_001267815.1 148547713 5191964 2844518..2845720 1 NC_009512.1 PFAM: phospholipase D/Transphosphatidylase; cardiolipin synthase 2 2845720 5191964 Pput_2496 Pseudomonas putida F1 cardiolipin synthase 2 YP_001267815.1 2844518 D 351746 CDS YP_001267816.1 148547714 5191965 2845720..2846673 1 NC_009512.1 hypothetical protein 2846673 5191965 Pput_2497 Pseudomonas putida F1 hypothetical protein YP_001267816.1 2845720 D 351746 CDS YP_001267817.1 148547715 5194407 2846702..2847118 1 NC_009512.1 hypothetical protein 2847118 5194407 Pput_2498 Pseudomonas putida F1 hypothetical protein YP_001267817.1 2846702 D 351746 CDS YP_001267818.1 148547716 5194408 complement(2847209..2847433) 1 NC_009512.1 PFAM: metallothionein, family 14; metallothionein family protein 2847433 5194408 Pput_2499 Pseudomonas putida F1 metallothionein family protein YP_001267818.1 2847209 R 351746 CDS YP_001267819.1 148547717 5193444 complement(2847430..2847894) 1 NC_009512.1 hypothetical protein 2847894 5193444 Pput_2500 Pseudomonas putida F1 hypothetical protein YP_001267819.1 2847430 R 351746 CDS YP_001267820.1 148547718 5193445 2848022..2850523 1 NC_009512.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2850523 ligD 5193445 ligD Pseudomonas putida F1 ATP-dependent DNA ligase YP_001267820.1 2848022 D 351746 CDS YP_001267821.1 148547719 5192449 2850564..2851607 1 NC_009512.1 hypothetical protein 2851607 5192449 Pput_2502 Pseudomonas putida F1 hypothetical protein YP_001267821.1 2850564 D 351746 CDS YP_001267822.1 148547720 5192450 2851604..2852359 1 NC_009512.1 PFAM: LmbE family protein; LmbE family protein 2852359 5192450 Pput_2503 Pseudomonas putida F1 LmbE family protein YP_001267822.1 2851604 D 351746 CDS YP_001267823.1 148547721 5191773 2852371..2852970 1 NC_009512.1 PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 2852970 5191773 Pput_2504 Pseudomonas putida F1 type 12 methyltransferase YP_001267823.1 2852371 D 351746 CDS YP_001267824.1 148547722 5191774 2852967..2853626 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2853626 5191774 Pput_2505 Pseudomonas putida F1 glycosyl transferase family protein YP_001267824.1 2852967 D 351746 CDS YP_001267825.1 148547723 5192503 complement(2853648..2854469) 1 NC_009512.1 TIGRFAM: Ku family containing protein; PFAM: Ku domain protein; Ku family containing protein 2854469 5192503 Pput_2506 Pseudomonas putida F1 Ku family containing protein YP_001267825.1 2853648 R 351746 CDS YP_001267826.1 148547724 5192504 complement(2854555..2855142) 1 NC_009512.1 nucleoside phosphorylase-like protein 2855142 5192504 Pput_2507 Pseudomonas putida F1 nucleoside phosphorylase-like protein YP_001267826.1 2854555 R 351746 CDS YP_001267827.1 148547725 5194405 complement(2855199..2856305) 1 NC_009512.1 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 2856305 5194405 Pput_2508 Pseudomonas putida F1 carboxylate-amine ligase YP_001267827.1 2855199 R 351746 CDS YP_001267828.1 148547726 5194406 complement(2856312..2857265) 1 NC_009512.1 PFAM: methyltransferase small; methyltransferase small 2857265 5194406 Pput_2509 Pseudomonas putida F1 methyltransferase small YP_001267828.1 2856312 R 351746 CDS YP_001267829.1 148547727 5192290 complement(2857265..2858596) 1 NC_009512.1 hypothetical protein 2858596 5192290 Pput_2510 Pseudomonas putida F1 hypothetical protein YP_001267829.1 2857265 R 351746 CDS YP_001267830.1 148547728 5192291 complement(2858871..2859053) 1 NC_009512.1 hypothetical protein 2859053 5192291 Pput_2511 Pseudomonas putida F1 hypothetical protein YP_001267830.1 2858871 R 351746 CDS YP_001267831.1 148547729 5191236 complement(2859201..2860484) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2860484 5191236 Pput_2512 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267831.1 2859201 R 351746 CDS YP_001267832.1 148547730 5191237 complement(2860489..2861400) 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 2861400 5191237 Pput_2513 Pseudomonas putida F1 aldo/keto reductase YP_001267832.1 2860489 R 351746 CDS YP_001267833.1 148547731 5191827 complement(2861490..2862353) 1 NC_009512.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; Dyp-type peroxidase family protein 2862353 5191827 Pput_2514 Pseudomonas putida F1 Dyp-type peroxidase family protein YP_001267833.1 2861490 R 351746 CDS YP_001267834.1 148547732 5191828 2862538..2863431 1 NC_009512.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 2863431 5191828 Pput_2515 Pseudomonas putida F1 bile acid:sodium symporter YP_001267834.1 2862538 D 351746 CDS YP_001267835.1 148547733 5191117 complement(2863466..2863933) 1 NC_009512.1 PFAM: Carotene hydroxylase; carotene hydroxylase 2863933 5191117 Pput_2516 Pseudomonas putida F1 carotene hydroxylase YP_001267835.1 2863466 R 351746 CDS YP_001267836.1 148547734 5191118 2864332..2865045 1 NC_009512.1 PFAM: MgtC/SapB transporter; MgtC/SapB transporter 2865045 5191118 Pput_2517 Pseudomonas putida F1 MgtC/SapB transporter YP_001267836.1 2864332 D 351746 CDS YP_001267837.1 148547735 5191702 2865063..2865566 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2865566 5191702 Pput_2518 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001267837.1 2865063 D 351746 CDS YP_001267838.1 148547736 5191703 complement(2865610..2867178) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2867178 5191703 Pput_2519 Pseudomonas putida F1 diguanylate cyclase YP_001267838.1 2865610 R 351746 CDS YP_001267839.1 148547737 5194047 2867332..2867832 1 NC_009512.1 hypothetical protein 2867832 5194047 Pput_2520 Pseudomonas putida F1 hypothetical protein YP_001267839.1 2867332 D 351746 CDS YP_001267840.1 148547738 5194048 2867841..2868092 1 NC_009512.1 hypothetical protein 2868092 5194048 Pput_2521 Pseudomonas putida F1 hypothetical protein YP_001267840.1 2867841 D 351746 CDS YP_001267841.1 148547739 5192868 complement(2868215..2869201) 1 NC_009512.1 hypothetical protein 2869201 5192868 Pput_2522 Pseudomonas putida F1 hypothetical protein YP_001267841.1 2868215 R 351746 CDS YP_001267842.1 148547740 5192869 2869437..2870909 1 NC_009512.1 hypothetical protein 2870909 5192869 Pput_2523 Pseudomonas putida F1 hypothetical protein YP_001267842.1 2869437 D 351746 CDS YP_001267843.1 148547741 5191731 2871069..2871674 1 NC_009512.1 PFAM: YheO domain protein; YheO domain-containing protein 2871674 5191731 Pput_2524 Pseudomonas putida F1 YheO domain-containing protein YP_001267843.1 2871069 D 351746 CDS YP_001267844.1 148547742 5191732 2871794..2872795 1 NC_009512.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 2872795 5191732 Pput_2525 Pseudomonas putida F1 hypothetical protein YP_001267844.1 2871794 D 351746 CDS YP_001267845.1 148547743 5193699 2872792..2873739 1 NC_009512.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2873739 5193699 Pput_2526 Pseudomonas putida F1 ornithine cyclodeaminase YP_001267845.1 2872792 D 351746 CDS YP_001267846.1 148547744 5193700 complement(2873753..2874994) 1 NC_009512.1 PFAM: amidohydrolase; Amidohydrolase 3; N-isopropylammelide isopropylaminohydrolase 2874994 5193700 Pput_2527 Pseudomonas putida F1 N-isopropylammelide isopropylaminohydrolase YP_001267846.1 2873753 R 351746 CDS YP_001267847.1 148547745 5193146 complement(2874999..2876216) 1 NC_009512.1 PFAM: purine catabolism PurC domain protein; PucR family transcriptional regulator 2876216 5193146 Pput_2528 Pseudomonas putida F1 PucR family transcriptional regulator YP_001267847.1 2874999 R 351746 CDS YP_001267848.1 148547746 5193147 complement(2876213..2877478) 1 NC_009512.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine permease 2877478 codB 5193147 codB Pseudomonas putida F1 cytosine permease YP_001267848.1 2876213 R 351746 CDS YP_001267849.1 148547747 5191618 complement(2877707..2878372) 1 NC_009512.1 PFAM: TENA/THI-4 domain protein; TenA family transcriptional regulator 2878372 5191618 Pput_2530 Pseudomonas putida F1 TenA family transcriptional regulator YP_001267849.1 2877707 R 351746 CDS YP_001267850.1 148547748 5191619 complement(2878369..2879112) 1 NC_009512.1 PFAM: TENA/THI-4 domain protein; TenA family transcriptional regulator 2879112 5191619 Pput_2531 Pseudomonas putida F1 TenA family transcriptional regulator YP_001267850.1 2878369 R 351746 CDS YP_001267851.1 148547749 5194890 2879451..2882846 1 NC_009512.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 2 2882846 5194890 Pput_2532 Pseudomonas putida F1 multicopper oxidase, type 2 YP_001267851.1 2879451 D 351746 CDS YP_001267852.1 148547750 5194891 2882902..2883885 1 NC_009512.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2883885 5194891 Pput_2533 Pseudomonas putida F1 electron transport protein SCO1/SenC YP_001267852.1 2882902 D 351746 CDS YP_001267853.1 148547751 5192147 2883967..2886294 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2886294 5192147 Pput_2534 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001267853.1 2883967 D 351746 CDS YP_001267854.1 148547752 5192148 2886355..2887335 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 2887335 5192148 Pput_2535 Pseudomonas putida F1 phage integrase family protein YP_001267854.1 2886355 D 351746 CDS YP_001267855.1 148547753 5194010 complement(2887325..2888365) 1 NC_009512.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 2888365 5194010 Pput_2536 Pseudomonas putida F1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001267855.1 2887325 R 351746 CDS YP_001267856.1 148547754 5194011 2888493..2889392 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2889392 5194011 Pput_2537 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267856.1 2888493 D 351746 CDS YP_001267857.1 148547755 5192407 complement(2889412..2890551) 1 NC_009512.1 PFAM: glycerate kinase; glycerate kinase 2890551 5192407 Pput_2538 Pseudomonas putida F1 glycerate kinase YP_001267857.1 2889412 R 351746 CDS YP_001267858.1 148547756 5192408 complement(2890693..2891790) 1 NC_009512.1 PFAM: sugar diacid recognition domain protein; transcriptional regulator CdaR 2891790 5192408 Pput_2539 Pseudomonas putida F1 transcriptional regulator CdaR YP_001267858.1 2890693 R 351746 CDS YP_001267859.1 148547757 5191572 2891954..2893282 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2893282 5191572 Pput_2540 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267859.1 2891954 D 351746 CDS YP_001267860.1 148547758 5191573 2893458..2894978 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2894978 5191573 Pput_2541 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001267860.1 2893458 D 351746 CDS YP_001267861.1 148547759 5193836 2895051..2896061 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 2896061 5193836 Pput_2542 Pseudomonas putida F1 aldo/keto reductase YP_001267861.1 2895051 D 351746 CDS YP_001267862.1 148547760 5193837 2896157..2897254 1 NC_009512.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 2897254 5193837 Pput_2543 Pseudomonas putida F1 N-ethylmaleimide reductase YP_001267862.1 2896157 D 351746 CDS YP_001267863.1 148547761 5192706 complement(2897298..2898278) 1 NC_009512.1 PFAM: luciferase family protein; luciferase family protein 2898278 5192706 Pput_2544 Pseudomonas putida F1 luciferase family protein YP_001267863.1 2897298 R 351746 CDS YP_001267864.1 148547762 5192707 complement(2898379..2899290) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2899290 5192707 Pput_2545 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267864.1 2898379 R 351746 CDS YP_001267865.1 148547763 5191570 complement(2899359..2900438) 1 NC_009512.1 PFAM: membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 2900438 5191570 Pput_2546 Pseudomonas putida F1 membrane-bound metal-dependent hydrolase YP_001267865.1 2899359 R 351746 CDS YP_001267866.1 148547764 5191571 complement(2900513..2901763) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 2901763 5191571 Pput_2547 Pseudomonas putida F1 outer membrane porin YP_001267866.1 2900513 R 351746 CDS YP_001267867.1 148547765 5191979 complement(2901818..2903017) 1 NC_009512.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter 2903017 5191979 Pput_2548 Pseudomonas putida F1 benzoate transporter YP_001267867.1 2901818 R 351746 CDS YP_001267868.1 148547766 5191980 complement(2903163..2904077) 1 NC_009512.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; catechol 1,2-dioxygenase 2904077 5191980 Pput_2549 Pseudomonas putida F1 catechol 1,2-dioxygenase YP_001267868.1 2903163 R 351746 CDS YP_001267869.1 148547767 5191962 complement(2904107..2905435) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2905435 5191962 Pput_2550 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267869.1 2904107 R 351746 CDS YP_001267870.1 148547768 5191963 complement(2905493..2906254) 1 NC_009512.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 2906254 benD 5191963 benD Pseudomonas putida F1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase YP_001267870.1 2905493 R 351746 CDS YP_001267871.1 148547769 5191779 complement(2906448..2907458) 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 2907458 5191779 Pput_2552 Pseudomonas putida F1 oxidoreductase FAD/NAD(P)-binding subunit YP_001267871.1 2906448 R 351746 CDS YP_001267872.1 148547770 5191780 complement(2907531..2908016) 1 NC_009512.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; benzoate 1,2-dioxygenase 2908016 5191780 Pput_2553 Pseudomonas putida F1 benzoate 1,2-dioxygenase YP_001267872.1 2907531 R 351746 CDS YP_001267873.1 148547771 5191920 complement(2908013..2909371) 1 NC_009512.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 2909371 5191920 Pput_2554 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001267873.1 2908013 R 351746 CDS YP_001267874.1 148547772 5191921 complement(2909531..2910487) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 2910487 5191921 Pput_2555 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267874.1 2909531 R 351746 CDS YP_001267875.1 148547773 5195189 complement(2910787..2911518) 1 NC_009512.1 hypothetical protein 2911518 5195189 Pput_2556 Pseudomonas putida F1 hypothetical protein YP_001267875.1 2910787 R 351746 CDS YP_001267876.1 148547774 5195190 complement(2911705..2912496) 1 NC_009512.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 2912496 5195190 Pput_2557 Pseudomonas putida F1 histidinol-phosphate phosphatase YP_001267876.1 2911705 R 351746 CDS YP_001267877.1 148547775 5191300 2912622..2913512 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 2913512 5191300 Pput_2558 Pseudomonas putida F1 UspA domain-containing protein YP_001267877.1 2912622 D 351746 CDS YP_001267878.1 148547776 5191301 2913769..2915895 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2915895 5191301 Pput_2559 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001267878.1 2913769 D 351746 CDS YP_001267879.1 148547777 5191681 complement(2915927..2916448) 1 NC_009512.1 hypothetical protein 2916448 5191681 Pput_2560 Pseudomonas putida F1 hypothetical protein YP_001267879.1 2915927 R 351746 CDS YP_001267880.1 148547778 5191682 complement(2916701..2917144) 1 NC_009512.1 hypothetical protein 2917144 5191682 Pput_2561 Pseudomonas putida F1 hypothetical protein YP_001267880.1 2916701 R 351746 CDS YP_001267881.1 148547779 5194397 complement(2917271..2918137) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2918137 5194397 Pput_2562 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267881.1 2917271 R 351746 CDS YP_001267882.1 148547780 5194398 2918245..2919630 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2919630 5194398 Pput_2563 Pseudomonas putida F1 aldehyde dehydrogenase YP_001267882.1 2918245 D 351746 CDS YP_001267883.1 148547781 5194546 complement(2919668..2921578) 1 NC_009512.1 hypothetical protein 2921578 5194546 Pput_2564 Pseudomonas putida F1 hypothetical protein YP_001267883.1 2919668 R 351746 CDS YP_001267884.1 148547782 5194547 complement(2921765..2922664) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2922664 5194547 Pput_2565 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267884.1 2921765 R 351746 CDS YP_001267885.1 148547783 5191330 2922848..2924206 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 2924206 5191330 Pput_2566 Pseudomonas putida F1 glutamate--putrescine ligase YP_001267885.1 2922848 D 351746 CDS YP_001267886.1 148547784 5191331 2924288..2925376 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2925376 5191331 Pput_2567 Pseudomonas putida F1 extracellular solute-binding protein YP_001267886.1 2924288 D 351746 CDS YP_001267887.1 148547785 5192221 2925390..2926685 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2926685 5192221 Pput_2568 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001267887.1 2925390 D 351746 CDS YP_001267888.1 148547786 5192222 2926826..2927503 1 NC_009512.1 hypothetical protein 2927503 5192222 Pput_2569 Pseudomonas putida F1 hypothetical protein YP_001267888.1 2926826 D 351746 CDS YP_001267889.1 148547787 5191878 complement(2927573..2928949) 1 NC_009512.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 2928949 5191878 Pput_2570 Pseudomonas putida F1 L-serine dehydratase 1 YP_001267889.1 2927573 R 351746 CDS YP_001267890.1 148547788 5191879 2929096..2930037 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2930037 5191879 Pput_2571 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267890.1 2929096 D 351746 CDS YP_001267891.1 148547789 5194777 complement(2930071..2931492) 1 NC_009512.1 PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase 2931492 5194777 Pput_2572 Pseudomonas putida F1 undecaprenyl-phosphate galactose phosphotransferase YP_001267891.1 2930071 R 351746 CDS YP_001267892.1 148547790 5194778 complement(2931670..2932422) 1 NC_009512.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 2932422 5194778 Pput_2573 Pseudomonas putida F1 WecB/TagA/CpsF family glycosyl transferase YP_001267892.1 2931670 R 351746 CDS YP_001267893.1 148547791 5194958 complement(2932422..2933609) 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2933609 5194958 Pput_2574 Pseudomonas putida F1 glycosyl transferase family protein YP_001267893.1 2932422 R 351746 CDS YP_001267894.1 148547792 5194959 complement(2933606..2934841) 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2934841 5194959 Pput_2575 Pseudomonas putida F1 group 1 glycosyl transferase YP_001267894.1 2933606 R 351746 CDS YP_001267895.1 148547793 5191306 complement(2934858..2935862) 1 NC_009512.1 PFAM: protein of unknown function DUF535; hypothetical protein 2935862 5191306 Pput_2576 Pseudomonas putida F1 hypothetical protein YP_001267895.1 2934858 R 351746 CDS YP_001267896.1 148547794 5191307 complement(2935872..2936849) 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2936849 5191307 Pput_2577 Pseudomonas putida F1 glycosyl transferase family protein YP_001267896.1 2935872 R 351746 CDS YP_001267897.1 148547795 5193161 complement(2936855..2937379) 1 NC_009512.1 Serine acetyltransferase-like protein 2937379 5193161 Pput_2578 Pseudomonas putida F1 Serine acetyltransferase-like protein YP_001267897.1 2936855 R 351746 CDS YP_001267898.1 148547796 5193162 complement(2937388..2938344) 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2938344 5193162 Pput_2579 Pseudomonas putida F1 glycosyl transferase family protein YP_001267898.1 2937388 R 351746 CDS YP_001267899.1 148547797 5195105 complement(2938346..2939032) 1 NC_009512.1 PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 2939032 5195105 Pput_2580 Pseudomonas putida F1 hexapaptide repeat-containing transferase YP_001267899.1 2938346 R 351746 CDS YP_001267900.1 148547798 5195106 complement(2939058..2940524) 1 NC_009512.1 PFAM: GMC oxidoreductase; GMC oxidoreductase 2940524 5195106 Pput_2581 Pseudomonas putida F1 GMC oxidoreductase YP_001267900.1 2939058 R 351746 CDS YP_001267901.1 148547799 5194941 complement(2940521..2940736) 1 NC_009512.1 hypothetical protein 2940736 5194941 Pput_2582 Pseudomonas putida F1 hypothetical protein YP_001267901.1 2940521 R 351746 CDS YP_001267902.1 148547800 5194942 complement(2940761..2942137) 1 NC_009512.1 PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2942137 5194942 Pput_2583 Pseudomonas putida F1 polysaccharide biosynthesis protein YP_001267902.1 2940761 R 351746 CDS YP_001267903.1 148547801 5193120 2942233..2943759 1 NC_009512.1 hypothetical protein 2943759 5193120 Pput_2584 Pseudomonas putida F1 hypothetical protein YP_001267903.1 2942233 D 351746 CDS YP_001267904.1 148547802 5193121 2943765..2946365 1 NC_009512.1 hypothetical protein 2946365 5193121 Pput_2585 Pseudomonas putida F1 hypothetical protein YP_001267904.1 2943765 D 351746 CDS YP_001267905.1 148547803 5191164 2946471..2947436 1 NC_009512.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; UDP-glucose 4-epimerase 2947436 5191164 Pput_2586 Pseudomonas putida F1 UDP-glucose 4-epimerase YP_001267905.1 2946471 D 351746 CDS YP_001267906.1 148547804 5191165 complement(2947500..2948306) 1 NC_009512.1 non-specific protein-tyrosine kinase 2948306 5191165 Pput_2587 Pseudomonas putida F1 non-specific protein-tyrosine kinase YP_001267906.1 2947500 R 351746 CDS YP_001267907.1 148547805 5194793 complement(2948318..2949880) 1 NC_009512.1 PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 2949880 5194793 Pput_2588 Pseudomonas putida F1 lipopolysaccharide biosynthesis protein YP_001267907.1 2948318 R 351746 CDS YP_001267908.1 148547806 5194794 complement(2949900..2951015) 1 NC_009512.1 hypothetical protein 2951015 5194794 Pput_2589 Pseudomonas putida F1 hypothetical protein YP_001267908.1 2949900 R 351746 CDS YP_001267909.1 148547807 5193390 complement(2951040..2951597) 1 NC_009512.1 PFAM: polysaccharide export protein; polysaccharide export protein 2951597 5193390 Pput_2590 Pseudomonas putida F1 polysaccharide export protein YP_001267909.1 2951040 R 351746 CDS YP_001267910.1 148547808 5193391 complement(2952285..2952827) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 2952827 5193391 Pput_2591 Pseudomonas putida F1 XRE family transcriptional regulator YP_001267910.1 2952285 R 351746 CDS YP_001267911.1 148547809 5193128 complement(2952904..2954433) 1 NC_009512.1 PFAM: short chain fatty acid transporter; short chain fatty acid transporter 2954433 5193128 Pput_2592 Pseudomonas putida F1 short chain fatty acid transporter YP_001267911.1 2952904 R 351746 CDS YP_001267912.1 148547810 5193129 complement(2954476..2955132) 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2955132 5193129 Pput_2593 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit B YP_001267912.1 2954476 R 351746 CDS YP_001267913.1 148547811 5194510 complement(2955168..2955866) 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2955866 5194510 Pput_2594 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit A YP_001267913.1 2955168 R 351746 CDS YP_001267914.1 148547812 5194511 2956007..2956912 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2956912 5194511 Pput_2595 Pseudomonas putida F1 LysR family transcriptional regulator YP_001267914.1 2956007 D 351746 CDS YP_001267915.1 148547813 5191759 2956900..2957721 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 2957721 5191759 Pput_2596 Pseudomonas putida F1 aldo/keto reductase YP_001267915.1 2956900 D 351746 CDS YP_001267916.1 148547814 5191760 complement(2957999..2958949) 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 2958949 5191760 Pput_2597 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001267916.1 2957999 R 351746 CDS YP_001267917.1 148547815 5193212 complement(2959484..2962564) 1 NC_009512.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2962564 dnaE2 5193212 dnaE2 Pseudomonas putida F1 error-prone DNA polymerase YP_001267917.1 2959484 R 351746 CDS YP_001267918.1 148547816 5193213 complement(2962561..2963979) 1 NC_009512.1 hypothetical protein 2963979 5193213 Pput_2599 Pseudomonas putida F1 hypothetical protein YP_001267918.1 2962561 R 351746 CDS YP_001267919.1 148547817 5192544 complement(2963986..2964606) 1 NC_009512.1 hypothetical protein 2964606 5192544 Pput_2600 Pseudomonas putida F1 hypothetical protein YP_001267919.1 2963986 R 351746 CDS YP_001267920.1 148547818 5192545 complement(2964606..2965223) 1 NC_009512.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 2965223 5192545 Pput_2601 Pseudomonas putida F1 LexA repressor YP_001267920.1 2964606 R 351746 CDS YP_001267921.1 148547819 5192702 2965315..2965998 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2965998 5192702 Pput_2602 Pseudomonas putida F1 HAD family hydrolase YP_001267921.1 2965315 D 351746 CDS YP_001267922.1 148547820 5192703 complement(2965995..2967380) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2967380 5192703 Pput_2603 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267922.1 2965995 R 351746 CDS YP_001267923.1 148547821 5191383 complement(2967425..2967751) 1 NC_009512.1 PFAM: NIPSNAP family containing protein; NIPSNAP family protein 2967751 5191383 Pput_2604 Pseudomonas putida F1 NIPSNAP family protein YP_001267923.1 2967425 R 351746 CDS YP_001267924.1 148547822 5191384 complement(2967751..2969466) 1 NC_009512.1 proposed role in polysaccahride synthesis; putative succinate dehydrogenase 2969466 5191384 Pput_2605 Pseudomonas putida F1 putative succinate dehydrogenase YP_001267924.1 2967751 R 351746 CDS YP_001267925.1 148547823 5194401 complement(2969463..2970290) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2970290 5194401 Pput_2606 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001267925.1 2969463 R 351746 CDS YP_001267926.1 148547824 5194402 2970467..2971339 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein; helix-turn-helix domain-containing protein 2971339 5194402 Pput_2607 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267926.1 2970467 D 351746 CDS YP_001267927.1 148547825 5194253 complement(2971417..2972190) 1 NC_009512.1 PFAM: regulatory protein, IclR; regulatory protein IclR 2972190 5194253 Pput_2608 Pseudomonas putida F1 regulatory protein IclR YP_001267927.1 2971417 R 351746 CDS YP_001267928.1 148547826 5194254 complement(2972255..2973712) 1 NC_009512.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2973712 5194254 Pput_2609 Pseudomonas putida F1 amidase YP_001267928.1 2972255 R 351746 CDS YP_001267929.1 148547827 5192092 complement(2973709..2975019) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2975019 5192092 Pput_2610 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267929.1 2973709 R 351746 CDS YP_001267930.1 148547828 5192093 complement(2975103..2976278) 1 NC_009512.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2976278 5192093 Pput_2611 Pseudomonas putida F1 amidohydrolase YP_001267930.1 2975103 R 351746 CDS YP_001267931.1 148547829 5190290 complement(2976325..2977818) 1 NC_009512.1 TIGRFAM: YD repeat protein; YD repeat-containing protein 2977818 5190290 Pput_2612 Pseudomonas putida F1 YD repeat-containing protein YP_001267931.1 2976325 R 351746 CDS YP_001267932.1 148547830 5190291 complement(2978320..2980920) 1 NC_009512.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat-containing protein 2980920 5190291 Pput_2613 Pseudomonas putida F1 YD repeat-containing protein YP_001267932.1 2978320 R 351746 CDS YP_001267933.1 148547831 5192852 complement(2980933..2981529) 1 NC_009512.1 hypothetical protein 2981529 5192852 Pput_2614 Pseudomonas putida F1 hypothetical protein YP_001267933.1 2980933 R 351746 CDS YP_001267934.1 148547832 5192853 complement(2981534..2985736) 1 NC_009512.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; YD repeat-containing protein 2985736 5192853 Pput_2615 Pseudomonas putida F1 YD repeat-containing protein YP_001267934.1 2981534 R 351746 CDS YP_001267935.1 148547833 5194658 complement(2985743..2986210) 1 NC_009512.1 PFAM: Domain of unknown function DUF1795; hypothetical protein 2986210 5194658 Pput_2616 Pseudomonas putida F1 hypothetical protein YP_001267935.1 2985743 R 351746 CDS YP_001267936.1 148547834 5194659 complement(2986245..2986829) 1 NC_009512.1 hypothetical protein 2986829 5194659 Pput_2617 Pseudomonas putida F1 hypothetical protein YP_001267936.1 2986245 R 351746 CDS YP_001267937.1 148547835 5193608 complement(2986840..2988696) 1 NC_009512.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 2988696 5193608 Pput_2618 Pseudomonas putida F1 Rhs element Vgr protein YP_001267937.1 2986840 R 351746 CDS YP_001267938.1 148547836 5192471 2989609..2990160 1 NC_009512.1 hypothetical protein 2990160 5192471 Pput_2620 Pseudomonas putida F1 hypothetical protein YP_001267938.1 2989609 D 351746 CDS YP_001267939.1 148547837 5190824 2990739..2991503 1 NC_009512.1 hypothetical protein 2991503 5190824 Pput_2621 Pseudomonas putida F1 hypothetical protein YP_001267939.1 2990739 D 351746 CDS YP_001267940.1 148547838 5190825 2991568..2992107 1 NC_009512.1 PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 2992107 5190825 Pput_2622 Pseudomonas putida F1 hypothetical protein YP_001267940.1 2991568 D 351746 CDS YP_001267941.1 148547839 5190308 2992122..2993624 1 NC_009512.1 PFAM: protein of unknown function DUF877; hypothetical protein 2993624 5190308 Pput_2623 Pseudomonas putida F1 hypothetical protein YP_001267941.1 2992122 D 351746 CDS YP_001267942.1 148547840 5190309 2993651..2994133 1 NC_009512.1 PFAM: GPW/gp25 family protein; GPW/gp25 family protein 2994133 5190309 Pput_2624 Pseudomonas putida F1 GPW/gp25 family protein YP_001267942.1 2993651 D 351746 CDS YP_001267943.1 148547841 5191564 2994133..2995953 1 NC_009512.1 PFAM: protein of unknown function DUF879; hypothetical protein 2995953 5191564 Pput_2625 Pseudomonas putida F1 hypothetical protein YP_001267943.1 2994133 D 351746 CDS YP_001267944.1 148547842 5191565 2995917..2996987 1 NC_009512.1 PFAM: protein of unknown function DUF1305; hypothetical protein 2996987 5191565 Pput_2626 Pseudomonas putida F1 hypothetical protein YP_001267944.1 2995917 D 351746 CDS YP_001267945.1 148547843 5195414 2996984..2999581 1 NC_009512.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2999581 5195414 Pput_2627 Pseudomonas putida F1 ATPase YP_001267945.1 2996984 D 351746 CDS YP_001267946.1 148547844 5195415 2999606..3000328 1 NC_009512.1 hypothetical protein 3000328 5195415 Pput_2628 Pseudomonas putida F1 hypothetical protein YP_001267946.1 2999606 D 351746 CDS YP_001267947.1 148547845 5194029 3000325..3001668 1 NC_009512.1 PFAM: protein of unknown function DUF876; hypothetical protein 3001668 5194029 Pput_2629 Pseudomonas putida F1 hypothetical protein YP_001267947.1 3000325 D 351746 CDS YP_001267948.1 148547846 5194030 3001665..3002381 1 NC_009512.1 hypothetical protein 3002381 5194030 Pput_2630 Pseudomonas putida F1 hypothetical protein YP_001267948.1 3001665 D 351746 CDS YP_001267949.1 148547847 5193199 3002412..3006215 1 NC_009512.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 3006215 5193199 Pput_2631 Pseudomonas putida F1 ImcF domain-containing protein YP_001267949.1 3002412 D 351746 CDS YP_001267950.1 148547848 5193200 3006212..3007120 1 NC_009512.1 hypothetical protein 3007120 5193200 Pput_2632 Pseudomonas putida F1 hypothetical protein YP_001267950.1 3006212 D 351746 CDS YP_001267951.1 148547849 5195358 3007117..3009612 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3009612 5195358 Pput_2633 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001267951.1 3007117 D 351746 CDS YP_001267952.1 148547850 5195359 3009756..3010274 1 NC_009512.1 PFAM: protein of unknown function DUF796; hypothetical protein 3010274 5195359 Pput_2634 Pseudomonas putida F1 hypothetical protein YP_001267952.1 3009756 D 351746 CDS YP_001267953.1 148547851 5195507 3010370..3011455 1 NC_009512.1 PFAM: ImpA domain protein; ImpA domain-containing protein 3011455 5195507 Pput_2635 Pseudomonas putida F1 ImpA domain-containing protein YP_001267953.1 3010370 D 351746 CDS YP_001267954.1 148547852 5195508 3011623..3014139 1 NC_009512.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 3014139 5195508 Pput_2636 Pseudomonas putida F1 excinuclease ABC subunit A YP_001267954.1 3011623 D 351746 CDS YP_001267955.1 148547853 5195039 3014224..3015873 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3015873 5195039 Pput_2637 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267955.1 3014224 D 351746 CDS YP_001267956.1 148547854 5195040 3015870..3017003 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 3017003 5195040 Pput_2638 Pseudomonas putida F1 secretion protein HlyD family protein YP_001267956.1 3015870 D 351746 CDS YP_001267957.1 148547855 5194120 3017107..3017709 1 NC_009512.1 hypothetical protein 3017709 5194120 Pput_2639 Pseudomonas putida F1 hypothetical protein YP_001267957.1 3017107 D 351746 CDS YP_001267958.1 148547856 5194121 complement(3017746..3018621) 1 NC_009512.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 3018621 5194121 Pput_2640 Pseudomonas putida F1 auxin efflux carrier YP_001267958.1 3017746 R 351746 CDS YP_001267959.1 148547857 5192265 3019049..3020347 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3020347 5192265 Pput_2641 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267959.1 3019049 D 351746 CDS YP_001267960.1 148547858 5192266 3020429..3020737 1 NC_009512.1 hypothetical protein 3020737 5192266 Pput_2642 Pseudomonas putida F1 hypothetical protein YP_001267960.1 3020429 D 351746 CDS YP_001267961.1 148547859 5191525 3020787..3021338 1 NC_009512.1 PFAM: PEBP family protein; PEBP family protein 3021338 5191525 Pput_2643 Pseudomonas putida F1 PEBP family protein YP_001267961.1 3020787 D 351746 CDS YP_001267962.1 148547860 5191526 3021893..3022954 1 NC_009512.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3022954 5191526 Pput_2644 Pseudomonas putida F1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001267962.1 3021893 D 351746 CDS YP_001267963.1 148547861 5192231 3023035..3023316 1 NC_009512.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3023316 5192231 Pput_2645 Pseudomonas putida F1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001267963.1 3023035 D 351746 CDS YP_001267964.1 148547862 5192232 3023459..3025258 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 3025258 5192232 Pput_2646 Pseudomonas putida F1 extracellular solute-binding protein YP_001267964.1 3023459 D 351746 CDS YP_001267965.1 148547863 5195376 3025255..3026313 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3026313 5195376 Pput_2647 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267965.1 3025255 D 351746 CDS YP_001267966.1 148547864 5195377 3026313..3027329 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3027329 5195377 Pput_2648 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001267966.1 3026313 D 351746 CDS YP_001267967.1 148547865 5194330 3027389..3028771 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 3028771 5194330 Pput_2649 Pseudomonas putida F1 sigma-54 dependent trancsriptional regulator YP_001267967.1 3027389 D 351746 CDS YP_001267968.1 148547866 5194331 3028996..3030387 1 NC_009512.1 PFAM: Citrate transporter; citrate transporter 3030387 5194331 Pput_2650 Pseudomonas putida F1 citrate transporter YP_001267968.1 3028996 D 351746 CDS YP_001267969.1 148547867 5193657 3030398..3031168 1 NC_009512.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3031168 5193657 Pput_2651 Pseudomonas putida F1 3-hydroxybutyrate dehydrogenase YP_001267969.1 3030398 D 351746 CDS YP_001267970.1 148547868 5193658 3031224..3031703 1 NC_009512.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3031703 5193658 Pput_2652 Pseudomonas putida F1 ecotin YP_001267970.1 3031224 D 351746 CDS YP_001267971.1 148547869 5191160 3031795..3033747 1 NC_009512.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3033747 5191160 Pput_2653 Pseudomonas putida F1 acetoacetyl-CoA synthetase YP_001267971.1 3031795 D 351746 CDS YP_001267972.1 148547870 5191161 3033835..3034110 1 NC_009512.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3034110 5191161 Pput_2654 Pseudomonas putida F1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001267972.1 3033835 D 351746 CDS YP_001267973.1 148547871 5191578 3034238..3036697 1 NC_009512.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Pertactin; Autotransporter beta- domain protein; outer membrane autotransporter 3036697 5191578 Pput_2655 Pseudomonas putida F1 outer membrane autotransporter YP_001267973.1 3034238 D 351746 CDS YP_001267974.1 148547872 5191579 complement(3036694..3037317) 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3037317 5191579 Pput_2656 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267974.1 3036694 R 351746 CDS YP_001267975.1 148547873 5195497 3037449..3038258 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3038258 5195497 Pput_2657 Pseudomonas putida F1 AraC family transcriptional regulator YP_001267975.1 3037449 D 351746 CDS YP_001267976.1 148547874 5195498 3038341..3038955 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3038955 5195498 Pput_2658 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001267976.1 3038341 D 351746 CDS YP_001267977.1 148547875 5194385 complement(3038903..3039628) 1 NC_009512.1 PFAM: metallophosphoesterase; metallophosphoesterase 3039628 5194385 Pput_2659 Pseudomonas putida F1 metallophosphoesterase YP_001267977.1 3038903 R 351746 CDS YP_001267978.1 148547876 5194386 3039843..3040586 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3040586 5194386 Pput_2660 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001267978.1 3039843 D 351746 CDS YP_001267979.1 148547877 5193739 3040583..3040825 1 NC_009512.1 hypothetical protein 3040825 5193739 Pput_2661 Pseudomonas putida F1 hypothetical protein YP_001267979.1 3040583 D 351746 CDS YP_001267980.1 148547878 5193740 complement(3040830..3041330) 1 NC_009512.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase, ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 3041330 5193740 Pput_2662 Pseudomonas putida F1 methylated-DNA--protein-cysteine methyltransferase YP_001267980.1 3040830 R 351746 CDS YP_001267981.1 148547879 5193041 complement(3041401..3042210) 1 NC_009512.1 hypothetical protein 3042210 5193041 Pput_2663 Pseudomonas putida F1 hypothetical protein YP_001267981.1 3041401 R 351746 CDS YP_001267982.1 148547880 5193042 complement(3042408..3044048) 1 NC_009512.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 3044048 5193042 Pput_2664 Pseudomonas putida F1 long-chain-fatty-acid--CoA ligase YP_001267982.1 3042408 R 351746 CDS YP_001267983.1 148547881 5191374 complement(3044060..3045838) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3045838 5191374 Pput_2665 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001267983.1 3044060 R 351746 CDS YP_001267984.1 148547882 5191375 complement(3045831..3048296) 1 NC_009512.1 RND efflux transporter 3048296 5191375 Pput_2666 Pseudomonas putida F1 RND efflux transporter YP_001267984.1 3045831 R 351746 CDS YP_001267985.1 148547883 5191272 complement(3048312..3049307) 1 NC_009512.1 hypothetical protein 3049307 5191272 Pput_2667 Pseudomonas putida F1 hypothetical protein YP_001267985.1 3048312 R 351746 CDS YP_001267986.1 148547884 5191273 complement(3049329..3050687) 1 NC_009512.1 PFAM: protein of unknown function DUF1329; hypothetical protein 3050687 5191273 Pput_2668 Pseudomonas putida F1 hypothetical protein YP_001267986.1 3049329 R 351746 CDS YP_001267987.1 148547885 5193669 complement(3050726..3052681) 1 NC_009512.1 hypothetical protein 3052681 5193669 Pput_2669 Pseudomonas putida F1 hypothetical protein YP_001267987.1 3050726 R 351746 CDS YP_001267988.1 148547886 5193670 complement(3052759..3053334) 1 NC_009512.1 PFAM: protein of unknown function DUF1234; hypothetical protein 3053334 5193670 Pput_2670 Pseudomonas putida F1 hypothetical protein YP_001267988.1 3052759 R 351746 CDS YP_001267989.1 148547887 5191614 3053582..3054613 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 3054613 5191614 Pput_2671 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001267989.1 3053582 D 351746 CDS YP_001267990.1 148547888 5191615 complement(3054576..3054908) 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 3054908 5191615 Pput_2672 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001267990.1 3054576 R 351746 CDS YP_001267991.1 148547889 5194457 complement(3054905..3055558) 1 NC_009512.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 3055558 5194457 Pput_2673 Pseudomonas putida F1 DSBA oxidoreductase YP_001267991.1 3054905 R 351746 CDS YP_001267992.1 148547890 5194458 complement(3055563..3056843) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3056843 5194458 Pput_2674 Pseudomonas putida F1 major facilitator superfamily transporter YP_001267992.1 3055563 R 351746 CDS YP_001267993.1 148547891 5195350 complement(3056971..3058023) 1 NC_009512.1 PFAM: protein of unknown function DUF849; hypothetical protein 3058023 5195350 Pput_2675 Pseudomonas putida F1 hypothetical protein YP_001267993.1 3056971 R 351746 CDS YP_001267994.1 148547892 5195351 complement(3058078..3058926) 1 NC_009512.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase 3058926 5195351 Pput_2676 Pseudomonas putida F1 taurine dioxygenase YP_001267994.1 3058078 R 351746 CDS YP_001267995.1 148547893 5195412 complement(3058940..3059920) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3059920 5195412 Pput_2677 Pseudomonas putida F1 alcohol dehydrogenase YP_001267995.1 3058940 R 351746 CDS YP_001267996.1 148547894 5195413 3060149..3060355 1 NC_009512.1 hypothetical protein 3060355 5195413 Pput_2678 Pseudomonas putida F1 hypothetical protein YP_001267996.1 3060149 D 351746 CDS YP_001267997.1 148547895 5191944 complement(3060398..3060757) 1 NC_009512.1 hypothetical protein 3060757 5191944 Pput_2679 Pseudomonas putida F1 hypothetical protein YP_001267997.1 3060398 R 351746 CDS YP_001267998.1 148547896 5191945 3060925..3061125 1 NC_009512.1 hypothetical protein 3061125 5191945 Pput_2680 Pseudomonas putida F1 hypothetical protein YP_001267998.1 3060925 D 351746 CDS YP_001267999.1 148547897 5194870 complement(3061349..3061684) 1 NC_009512.1 hypothetical protein 3061684 5194870 Pput_2681 Pseudomonas putida F1 hypothetical protein YP_001267999.1 3061349 R 351746 CDS YP_001268000.1 148547898 5194871 complement(3061855..3062304) 1 NC_009512.1 hypothetical protein 3062304 5194871 Pput_2682 Pseudomonas putida F1 hypothetical protein YP_001268000.1 3061855 R 351746 CDS YP_001268001.1 148547899 5195485 complement(3062420..3062518) 1 NC_009512.1 hypothetical protein 3062518 5195485 Pput_2683 Pseudomonas putida F1 hypothetical protein YP_001268001.1 3062420 R 351746 CDS YP_001268002.1 148547900 5195486 complement(3062627..3062914) 1 NC_009512.1 hypothetical protein 3062914 5195486 Pput_2684 Pseudomonas putida F1 hypothetical protein YP_001268002.1 3062627 R 351746 CDS YP_001268003.1 148547901 5194372 3063130..3063657 1 NC_009512.1 hypothetical protein 3063657 5194372 Pput_2685 Pseudomonas putida F1 hypothetical protein YP_001268003.1 3063130 D 351746 CDS YP_001268004.1 148547902 5194373 3063701..3064309 1 NC_009512.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3064309 5194373 Pput_2686 Pseudomonas putida F1 RNA polymerase sigma factor YP_001268004.1 3063701 D 351746 CDS YP_001268005.1 148547903 5191679 3064306..3064998 1 NC_009512.1 hypothetical protein 3064998 5191679 Pput_2687 Pseudomonas putida F1 hypothetical protein YP_001268005.1 3064306 D 351746 CDS YP_001268006.1 148547904 5191680 complement(3065052..3065309) 1 NC_009512.1 hypothetical protein 3065309 5191680 Pput_2688 Pseudomonas putida F1 hypothetical protein YP_001268006.1 3065052 R 351746 CDS YP_001268007.1 148547905 5192263 complement(3065700..3067097) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3067097 5192263 Pput_2689 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268007.1 3065700 R 351746 CDS YP_001268008.1 148547906 5192264 complement(3067238..3067675) 1 NC_009512.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3067675 5192264 Pput_2690 Pseudomonas putida F1 3-dehydroquinate dehydratase YP_001268008.1 3067238 R 351746 CDS YP_001268009.1 148547907 5193897 complement(3067680..3068498) 1 NC_009512.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase 3068498 5193897 Pput_2691 Pseudomonas putida F1 shikimate 5-dehydrogenase YP_001268009.1 3067680 R 351746 CDS YP_001268010.1 148547908 5193898 complement(3068495..3069727) 1 NC_009512.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3069727 5193898 Pput_2692 Pseudomonas putida F1 L-carnitine dehydratase/bile acid-inducible protein F YP_001268010.1 3068495 R 351746 CDS YP_001268011.1 148547909 5194532 complement(3069724..3070179) 1 NC_009512.1 PFAM: MaoC domain protein dehydratase; dehydratase 3070179 5194532 Pput_2693 Pseudomonas putida F1 dehydratase YP_001268011.1 3069724 R 351746 CDS YP_001268012.1 148547910 5194533 complement(3070176..3070574) 1 NC_009512.1 hypothetical protein 3070574 5194533 Pput_2694 Pseudomonas putida F1 hypothetical protein YP_001268012.1 3070176 R 351746 CDS YP_001268013.1 148547911 5190820 complement(3070571..3071518) 1 NC_009512.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3071518 5190820 Pput_2695 Pseudomonas putida F1 2-dehydropantoate 2-reductase YP_001268013.1 3070571 R 351746 CDS YP_001268014.1 148547912 5190821 3071579..3072511 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3072511 5190821 Pput_2696 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268014.1 3071579 D 351746 CDS YP_001268015.1 148547913 5192343 3072654..3074657 1 NC_009512.1 hypothetical protein 3074657 5192343 Pput_2697 Pseudomonas putida F1 hypothetical protein YP_001268015.1 3072654 D 351746 CDS YP_001268016.1 148547914 5192344 complement(3074854..3075615) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3075615 5192344 Pput_2698 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268016.1 3074854 R 351746 CDS YP_001268017.1 148547915 5195245 complement(3076035..3077291) 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3077291 5195245 Pput_2699 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001268017.1 3076035 R 351746 CDS YP_001268018.1 148547916 5195246 3077647..3078396 1 NC_009512.1 PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 3078396 5195246 Pput_2700 Pseudomonas putida F1 ThiJ/PfpI domain-containing protein YP_001268018.1 3077647 D 351746 CDS YP_001268019.1 148547917 5193416 3078511..3079437 1 NC_009512.1 hypothetical protein 3079437 5193416 Pput_2701 Pseudomonas putida F1 hypothetical protein YP_001268019.1 3078511 D 351746 CDS YP_001268020.1 148547918 5193417 complement(3079453..3079932) 1 NC_009512.1 PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 3079932 5193417 Pput_2702 Pseudomonas putida F1 MerR family transcriptional regulator YP_001268020.1 3079453 R 351746 CDS YP_001268021.1 148547919 5195382 complement(3080070..3080864) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3080864 5195382 Pput_2703 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268021.1 3080070 R 351746 CDS YP_001268022.1 148547920 5195383 complement(3080911..3081924) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3081924 5195383 Pput_2704 Pseudomonas putida F1 alcohol dehydrogenase YP_001268022.1 3080911 R 351746 CDS YP_001268023.1 148547921 5192762 3082024..3082467 1 NC_009512.1 PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator 3082467 5192762 Pput_2705 Pseudomonas putida F1 HxlR family transcriptional regulator YP_001268023.1 3082024 D 351746 CDS YP_001268024.1 148547922 5192763 complement(3082598..3083479) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3083479 5192763 Pput_2706 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268024.1 3082598 R 351746 CDS YP_001268025.1 148547923 5192204 3083789..3084817 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KR; NAD-dependent epimerase/dehydratase 3084817 5192204 Pput_2707 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001268025.1 3083789 D 351746 CDS YP_001268026.1 148547924 5192205 3085119..3085634 1 NC_009512.1 PFAM: protein of unknown function UPF0157; hypothetical protein 3085634 5192205 Pput_2708 Pseudomonas putida F1 hypothetical protein YP_001268026.1 3085119 D 351746 CDS YP_001268027.1 148547925 5192419 3085631..3085846 1 NC_009512.1 hypothetical protein 3085846 5192419 Pput_2709 Pseudomonas putida F1 hypothetical protein YP_001268027.1 3085631 D 351746 CDS YP_001268028.1 148547926 5192420 complement(3085865..3086866) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3086866 5192420 Pput_2710 Pseudomonas putida F1 alcohol dehydrogenase YP_001268028.1 3085865 R 351746 CDS YP_001268029.1 148547927 5190649 3086974..3087852 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3087852 5190649 Pput_2711 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268029.1 3086974 D 351746 CDS YP_001268030.1 148547928 5190650 complement(3087915..3088736) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 3088736 5190650 Pput_2712 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001268030.1 3087915 R 351746 CDS YP_001268031.1 148547929 5190513 3088866..3089384 1 NC_009512.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 3089384 5190513 Pput_2713 Pseudomonas putida F1 peroxidase-like protein YP_001268031.1 3088866 D 351746 CDS YP_001268032.1 148547930 5190514 3089398..3089652 1 NC_009512.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 3089652 5190514 Pput_2714 Pseudomonas putida F1 glutaredoxin 3 YP_001268032.1 3089398 D 351746 CDS YP_001268033.1 148547931 5192060 complement(3089744..3090838) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3090838 5192060 Pput_2715 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268033.1 3089744 R 351746 CDS YP_001268034.1 148547932 5192061 3090933..3092513 1 NC_009512.1 PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; RimK domain-containing protein ATP-grasp 3092513 5192061 Pput_2716 Pseudomonas putida F1 RimK domain-containing protein ATP-grasp YP_001268034.1 3090933 D 351746 CDS YP_001268035.1 148547933 5191470 3092517..3093428 1 NC_009512.1 PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein 3093428 5191470 Pput_2717 Pseudomonas putida F1 CorA family protein Mg2+ transporter protein YP_001268035.1 3092517 D 351746 CDS YP_001268036.1 148547934 5191471 complement(3093738..3094124) 1 NC_009512.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3094124 5191471 Pput_2718 Pseudomonas putida F1 antibiotic biosynthesis monooxygenase YP_001268036.1 3093738 R 351746 CDS YP_001268037.1 148547935 5193777 complement(3094243..3095250) 1 NC_009512.1 TIGRFAM: Alcohol dehydrogenase. zinc-binding type 1; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase 3095250 5193777 Pput_2719 Pseudomonas putida F1 zinc-binding alcohol dehydrogenase YP_001268037.1 3094243 R 351746 CDS YP_001268038.1 148547936 5193778 3095356..3096246 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3096246 5193778 Pput_2720 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268038.1 3095356 D 351746 CDS YP_001268039.1 148547937 5194578 3096359..3096943 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3096943 5194578 Pput_2721 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268039.1 3096359 D 351746 CDS YP_001268040.1 148547938 5194579 3096991..3097467 1 NC_009512.1 PFAM: protein of unknown function DUF1348; hypothetical protein 3097467 5194579 Pput_2722 Pseudomonas putida F1 hypothetical protein YP_001268040.1 3096991 D 351746 CDS YP_001268041.1 148547939 5192022 complement(3097544..3098485) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 3098485 5192022 Pput_2723 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001268041.1 3097544 R 351746 CDS YP_001268042.1 148547940 5192023 3099015..3100073 1 NC_009512.1 phenylacetaldoxime dehydratase 3100073 5192023 Pput_2724 Pseudomonas putida F1 phenylacetaldoxime dehydratase YP_001268042.1 3099015 D 351746 CDS YP_001268043.1 148547941 5191960 3100156..3101022 1 NC_009512.1 meta-pathway phenol degradation-like protein 3101022 5191960 Pput_2725 Pseudomonas putida F1 meta-pathway phenol degradation-like protein YP_001268043.1 3100156 D 351746 CDS YP_001268044.1 148547942 5191961 3101076..3101600 1 NC_009512.1 PFAM: globin; globin 3101600 5191961 Pput_2726 Pseudomonas putida F1 globin YP_001268044.1 3101076 D 351746 CDS YP_001268045.1 148547943 5193292 3101790..3103304 1 NC_009512.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3103304 5193292 Pput_2727 Pseudomonas putida F1 amidase YP_001268045.1 3101790 D 351746 CDS YP_001268046.1 148547944 5193293 3103393..3103974 1 NC_009512.1 TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 3103974 5193293 Pput_2728 Pseudomonas putida F1 nitrile hydratase subunit alpha YP_001268046.1 3103393 D 351746 CDS YP_001268047.1 148547945 5194488 3104016..3104678 1 NC_009512.1 PFAM: nitrile hydratase, beta subunit; nitrile hydratase 3104678 5194488 Pput_2729 Pseudomonas putida F1 nitrile hydratase YP_001268047.1 3104016 D 351746 CDS YP_001268048.1 148547946 5194489 3104675..3105937 1 NC_009512.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 3105937 5194489 Pput_2730 Pseudomonas putida F1 cobalamin synthesis protein, P47K YP_001268048.1 3104675 D 351746 CDS YP_001268049.1 148547947 5195509 3105951..3107243 1 NC_009512.1 PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 3107243 5195509 Pput_2731 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268049.1 3105951 D 351746 CDS YP_001268050.1 148547948 5195510 complement(3107304..3108173) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3108173 5195510 Pput_2732 Pseudomonas putida F1 hypothetical protein YP_001268050.1 3107304 R 351746 CDS YP_001268051.1 148547949 5191371 3108295..3109677 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3109677 5191371 Pput_2733 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268051.1 3108295 D 351746 CDS YP_001268052.1 148547950 5191372 complement(3109806..3111086) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3111086 5191372 Pput_2734 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268052.1 3109806 R 351746 CDS YP_001268053.1 148547951 5192173 complement(3111137..3111796) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3111796 5192173 Pput_2735 Pseudomonas putida F1 two component transcriptional regulator YP_001268053.1 3111137 R 351746 CDS YP_001268054.1 148547952 5192174 3111929..3112252 1 NC_009512.1 hypothetical protein 3112252 5192174 Pput_2736 Pseudomonas putida F1 hypothetical protein YP_001268054.1 3111929 D 351746 CDS YP_001268055.1 148547953 5192870 3112344..3112814 1 NC_009512.1 hypothetical protein 3112814 5192870 Pput_2737 Pseudomonas putida F1 hypothetical protein YP_001268055.1 3112344 D 351746 CDS YP_001268056.1 148547954 5192871 3112840..3115020 1 NC_009512.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 3115020 5192871 Pput_2738 Pseudomonas putida F1 oxidoreductase FAD/NAD(P)-binding subunit YP_001268056.1 3112840 D 351746 CDS YP_001268057.1 148547955 5193526 3115010..3115975 1 NC_009512.1 PFAM: ApbE family lipoprotein; ApbE family lipoprotein 3115975 5193526 Pput_2739 Pseudomonas putida F1 ApbE family lipoprotein YP_001268057.1 3115010 D 351746 CDS YP_001268058.1 148547956 5193527 3116045..3116746 1 NC_009512.1 PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein 3116746 5193527 Pput_2740 Pseudomonas putida F1 hypothetical protein YP_001268058.1 3116045 D 351746 CDS YP_001268059.1 148547957 5191082 3116958..3117434 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3117434 5191082 Pput_2741 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268059.1 3116958 D 351746 CDS YP_001268060.1 148547958 5191083 complement(3117507..3118910) 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; response regulator receiver sensor signal transduction histidine kinase 3118910 5191083 Pput_2742 Pseudomonas putida F1 response regulator receiver sensor signal transduction histidine kinase YP_001268060.1 3117507 R 351746 CDS YP_001268061.1 148547959 5190304 complement(3118907..3120721) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3120721 5190304 Pput_2743 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268061.1 3118907 R 351746 CDS YP_001268062.1 148547960 5190305 complement(3120718..3121716) 1 NC_009512.1 PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase 3121716 5190305 Pput_2744 Pseudomonas putida F1 cytochrome-c peroxidase YP_001268062.1 3120718 R 351746 CDS YP_001268063.1 148547961 5191094 3121914..3123284 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 3123284 5191094 Pput_2745 Pseudomonas putida F1 response regulator receiver protein YP_001268063.1 3121914 D 351746 CDS YP_001268064.1 148547962 5191095 3123405..3124070 1 NC_009512.1 PFAM: protein of unknown function DUF159; hypothetical protein 3124070 5191095 Pput_2746 Pseudomonas putida F1 hypothetical protein YP_001268064.1 3123405 D 351746 CDS YP_001268065.1 148547963 5194896 complement(3124687..3125016) 1 NC_009512.1 hypothetical protein 3125016 5194896 Pput_2747 Pseudomonas putida F1 hypothetical protein YP_001268065.1 3124687 R 351746 CDS YP_001268066.1 148547964 5194897 3125485..3125739 1 NC_009512.1 hypothetical protein 3125739 5194897 Pput_2748 Pseudomonas putida F1 hypothetical protein YP_001268066.1 3125485 D 351746 CDS YP_001268067.1 148547965 5190292 3125732..3126031 1 NC_009512.1 PFAM: Helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein 3126031 5190292 Pput_2749 Pseudomonas putida F1 helix-turn-helix, type 11 domain-containing protein YP_001268067.1 3125732 D 351746 CDS YP_001268068.1 148547966 5190293 3126108..3126623 1 NC_009512.1 PFAM: protein of unknown function DUF925; hypothetical protein 3126623 5190293 Pput_2750 Pseudomonas putida F1 hypothetical protein YP_001268068.1 3126108 D 351746 CDS YP_001268069.1 148547967 5194418 complement(3127298..3128104) 1 NC_009512.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3128104 dapF 5194418 dapF Pseudomonas putida F1 diaminopimelate epimerase YP_001268069.1 3127298 R 351746 CDS YP_001268070.1 148547968 5194419 3128372..3128953 1 NC_009512.1 hypothetical protein 3128953 5194419 Pput_2752 Pseudomonas putida F1 hypothetical protein YP_001268070.1 3128372 D 351746 CDS YP_001268071.1 148547969 5193779 3129855..3130457 1 NC_009512.1 PFAM: OsmC family protein; OsmC family protein 3130457 5193779 Pput_2753 Pseudomonas putida F1 OsmC family protein YP_001268071.1 3129855 D 351746 CDS YP_001268072.1 148547970 5192167 3131086..3132672 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3132672 5192167 Pput_2755 Pseudomonas putida F1 ABC transporter-like protein YP_001268072.1 3131086 D 351746 CDS YP_001268073.1 148547971 5195241 3132848..3134041 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3134041 5195241 Pput_2756 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268073.1 3132848 D 351746 CDS YP_001268074.1 148547972 5195242 complement(3134003..3135049) 1 NC_009512.1 hypothetical protein 3135049 5195242 Pput_2757 Pseudomonas putida F1 hypothetical protein YP_001268074.1 3134003 R 351746 CDS YP_001268075.1 148547973 5194566 3135251..3136093 1 NC_009512.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3136093 5194566 Pput_2758 Pseudomonas putida F1 putative glutathione S-transferase YghU YP_001268075.1 3135251 D 351746 CDS YP_001268076.1 148547974 5192168 3136678..3138381 1 NC_009512.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3138381 5192168 Pput_2760 Pseudomonas putida F1 amidase YP_001268076.1 3136678 D 351746 CDS YP_001268077.1 148547975 5192114 3138434..3139138 1 NC_009512.1 PFAM: YheO domain protein; YheO domain-containing protein 3139138 5192114 Pput_2761 Pseudomonas putida F1 YheO domain-containing protein YP_001268077.1 3138434 D 351746 CDS YP_001268078.1 148547976 5192115 3139135..3140052 1 NC_009512.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 3140052 5192115 Pput_2762 Pseudomonas putida F1 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_001268078.1 3139135 D 351746 CDS YP_001268079.1 148547977 5192451 3140237..3141334 1 NC_009512.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 3141334 5192451 Pput_2763 Pseudomonas putida F1 carboxynorspermidine decarboxylase YP_001268079.1 3140237 D 351746 CDS YP_001268080.1 148547978 5192452 3141367..3142611 1 NC_009512.1 PFAM: Saccharopine dehydrogenase; saccharopine dehydrogenase 3142611 5192452 Pput_2764 Pseudomonas putida F1 saccharopine dehydrogenase YP_001268080.1 3141367 D 351746 CDS YP_001268081.1 148547979 5192200 complement(3142758..3143804) 1 NC_009512.1 PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3143804 5192200 Pput_2765 Pseudomonas putida F1 type 12 methyltransferase YP_001268081.1 3142758 R 351746 CDS YP_001268082.1 148547980 5192201 3144049..3145377 1 NC_009512.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; UDP-glucose 6-dehydrogenase 3145377 5192201 Pput_2766 Pseudomonas putida F1 UDP-glucose 6-dehydrogenase YP_001268082.1 3144049 D 351746 CDS YP_001268083.1 148547981 5193954 complement(3145387..3147006) 1 NC_009512.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 3147006 5193954 Pput_2767 Pseudomonas putida F1 malate:quinone oxidoreductase YP_001268083.1 3145387 R 351746 CDS YP_001268084.1 148547982 5193955 3147149..3148369 1 NC_009512.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 3148369 5193955 Pput_2768 Pseudomonas putida F1 radical SAM domain-containing protein YP_001268084.1 3147149 D 351746 CDS YP_001268085.1 148547983 5193043 3148366..3149208 1 NC_009512.1 hypothetical protein 3149208 5193043 Pput_2769 Pseudomonas putida F1 hypothetical protein YP_001268085.1 3148366 D 351746 CDS YP_001268086.1 148547984 5193044 complement(3149270..3150241) 1 NC_009512.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 3150241 5193044 Pput_2770 Pseudomonas putida F1 urea amidolyase-like protein YP_001268086.1 3149270 R 351746 CDS YP_001268087.1 148547985 5191510 complement(3150238..3151125) 1 NC_009512.1 PFAM: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 3151125 5191510 Pput_2771 Pseudomonas putida F1 allophanate hydrolase subunit 1 YP_001268087.1 3150238 R 351746 CDS YP_001268088.1 148547986 5191511 complement(3151218..3151976) 1 NC_009512.1 PFAM: LamB/YcsF family protein; hypothetical protein 3151976 5191511 Pput_2772 Pseudomonas putida F1 hypothetical protein YP_001268088.1 3151218 R 351746 CDS YP_001268089.1 148547987 5190600 3152097..3153014 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3153014 5190600 Pput_2773 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268089.1 3152097 D 351746 CDS YP_001268090.1 148547988 5190601 3153206..3155272 1 NC_009512.1 TIGRFAM: trehalose synthase; trehalose synthase 3155272 5190601 Pput_2774 Pseudomonas putida F1 trehalose synthase YP_001268090.1 3153206 D 351746 CDS YP_001268091.1 148547989 5193360 3155445..3156074 1 NC_009512.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3156074 5193360 Pput_2775 Pseudomonas putida F1 riboflavin synthase subunit alpha YP_001268091.1 3155445 D 351746 CDS YP_001268092.1 148547990 5193361 3156084..3156785 1 NC_009512.1 PFAM: protein of unknown function DUF1275; hypothetical protein 3156785 5193361 Pput_2776 Pseudomonas putida F1 hypothetical protein YP_001268092.1 3156084 D 351746 CDS YP_001268093.1 148547991 5195305 complement(3156786..3158288) 1 NC_009512.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; proline/glycine betaine transporter 3158288 5195305 Pput_2777 Pseudomonas putida F1 proline/glycine betaine transporter YP_001268093.1 3156786 R 351746 CDS YP_001268094.1 148547992 5195306 complement(3158447..3159421) 1 NC_009512.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3159421 5195306 Pput_2778 Pseudomonas putida F1 delta-aminolevulinic acid dehydratase YP_001268094.1 3158447 R 351746 CDS YP_001268095.1 148547993 5190268 complement(3159617..3160510) 1 NC_009512.1 PFAM: protein of unknown function RIO1; hypothetical protein 3160510 5190268 Pput_2779 Pseudomonas putida F1 hypothetical protein YP_001268095.1 3159617 R 351746 CDS YP_001268096.1 148547994 5190269 complement(3160598..3161989) 1 NC_009512.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; GABA permease 3161989 5190269 Pput_2780 Pseudomonas putida F1 GABA permease YP_001268096.1 3160598 R 351746 CDS YP_001268097.1 148547995 5190868 complement(3162140..3163390) 1 NC_009512.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 3163390 5190868 Pput_2781 Pseudomonas putida F1 hydroxyglutarate oxidase YP_001268097.1 3162140 R 351746 CDS YP_001268098.1 148547996 5190869 complement(3163505..3164482) 1 NC_009512.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3164482 5190869 Pput_2782 Pseudomonas putida F1 hypothetical protein YP_001268098.1 3163505 R 351746 CDS YP_001268099.1 148547997 5193770 3164573..3165373 1 NC_009512.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3165373 5193770 Pput_2783 Pseudomonas putida F1 DNA-binding transcriptional regulator CsiR YP_001268099.1 3164573 D 351746 CDS YP_001268100.1 148547998 5193771 3165448..3166128 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3166128 5193771 Pput_2784 Pseudomonas putida F1 two component transcriptional regulator YP_001268100.1 3165448 D 351746 CDS YP_001268101.1 148547999 5190996 3166106..3167497 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3167497 5190996 Pput_2785 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268101.1 3166106 D 351746 CDS YP_001268102.1 148548000 5190997 complement(3167628..3169010) 1 NC_009512.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3169010 cysS 5190997 cysS Pseudomonas putida F1 cysteinyl-tRNA synthetase YP_001268102.1 3167628 R 351746 CDS YP_001268103.1 148548001 5192039 complement(3169020..3170723) 1 NC_009512.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3170723 5192039 Pput_2787 Pseudomonas putida F1 glutaminyl-tRNA synthetase YP_001268103.1 3169020 R 351746 CDS YP_001268104.1 148548002 5192040 3170882..3171472 1 NC_009512.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3171472 5192040 Pput_2788 Pseudomonas putida F1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001268104.1 3170882 D 351746 CDS YP_001268105.1 148548003 5194273 3171469..3172191 1 NC_009512.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3172191 5194273 Pput_2789 Pseudomonas putida F1 UDP-2,3-diacylglucosamine hydrolase YP_001268105.1 3171469 D 351746 CDS YP_001268106.1 148548004 5194274 complement(3172313..3174604) 1 NC_009512.1 PFAM: peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 3174604 5194274 Pput_2790 Pseudomonas putida F1 peptidase S45, penicillin amidase YP_001268106.1 3172313 R 351746 CDS YP_001268107.1 148548005 5194938 3174822..3175196 1 NC_009512.1 hypothetical protein 3175196 5194938 Pput_2791 Pseudomonas putida F1 hypothetical protein YP_001268107.1 3174822 D 351746 CDS YP_001268108.1 148548006 5194939 complement(3175233..3175421) 1 NC_009512.1 hypothetical protein 3175421 5194939 Pput_2792 Pseudomonas putida F1 hypothetical protein YP_001268108.1 3175233 R 351746 CDS YP_001268109.1 148548007 5191566 3175573..3176031 1 NC_009512.1 hypothetical protein 3176031 5191566 Pput_2793 Pseudomonas putida F1 hypothetical protein YP_001268109.1 3175573 D 351746 CDS YP_001268110.1 148548008 5191567 3176283..3176663 1 NC_009512.1 hypothetical protein 3176663 5191567 Pput_2794 Pseudomonas putida F1 hypothetical protein YP_001268110.1 3176283 D 351746 CDS YP_001268111.1 148548009 5195025 3176729..3177373 1 NC_009512.1 hypothetical protein 3177373 5195025 Pput_2795 Pseudomonas putida F1 hypothetical protein YP_001268111.1 3176729 D 351746 CDS YP_001268112.1 148548010 5195026 3177469..3178002 1 NC_009512.1 hypothetical protein 3178002 5195026 Pput_2796 Pseudomonas putida F1 hypothetical protein YP_001268112.1 3177469 D 351746 CDS YP_001268113.1 148548011 5190413 complement(3178022..3181642) 1 NC_009512.1 PFAM: protein of unknown function DUF490; hypothetical protein 3181642 5190413 Pput_2797 Pseudomonas putida F1 hypothetical protein YP_001268113.1 3178022 R 351746 CDS YP_001268114.1 148548012 5190414 complement(3181693..3183444) 1 NC_009512.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 3183444 5190414 Pput_2798 Pseudomonas putida F1 surface antigen (D15) YP_001268114.1 3181693 R 351746 CDS YP_001268115.1 148548013 5190830 complement(3183488..3184138) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3184138 5190830 Pput_2799 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268115.1 3183488 R 351746 CDS YP_001268116.1 148548014 5190831 3184301..3185113 1 NC_009512.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3185113 5190831 Pput_2800 Pseudomonas putida F1 exonuclease III YP_001268116.1 3184301 D 351746 CDS YP_001268117.1 148548015 5193122 complement(3185154..3185906) 1 NC_009512.1 putative transmembrane anti-sigma factor 3185906 5193122 Pput_2801 Pseudomonas putida F1 putative transmembrane anti-sigma factor YP_001268117.1 3185154 R 351746 CDS YP_001268118.1 148548016 5193123 complement(3185903..3186424) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 3186424 5193123 Pput_2802 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001268118.1 3185903 R 351746 CDS YP_001268119.1 148548017 5190256 3186549..3187601 1 NC_009512.1 PFAM: Catalase domain protein; catalase domain-containing protein 3187601 5190256 Pput_2803 Pseudomonas putida F1 catalase domain-containing protein YP_001268119.1 3186549 D 351746 CDS YP_001268120.1 148548018 5190257 3187598..3188131 1 NC_009512.1 PFAM: cytochrome B561; cytochrome B561 3188131 5190257 Pput_2804 Pseudomonas putida F1 cytochrome B561 YP_001268120.1 3187598 D 351746 CDS YP_001268121.1 148548019 5190338 3188213..3189418 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3189418 5190338 Pput_2805 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268121.1 3188213 D 351746 CDS YP_001268122.1 148548020 5190339 3189500..3190045 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3190045 5190339 Pput_2806 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268122.1 3189500 D 351746 CDS YP_001268123.1 148548021 5190988 3190048..3190347 1 NC_009512.1 hypothetical protein 3190347 5190988 Pput_2807 Pseudomonas putida F1 hypothetical protein YP_001268123.1 3190048 D 351746 CDS YP_001268124.1 148548022 5190989 complement(3190320..3190934) 1 NC_009512.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 3190934 5190989 Pput_2808 Pseudomonas putida F1 DSBA oxidoreductase YP_001268124.1 3190320 R 351746 CDS YP_001268125.1 148548023 5195441 complement(3190964..3191695) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3191695 5195441 Pput_2809 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268125.1 3190964 R 351746 CDS YP_001268126.1 148548024 5195442 3191785..3192348 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3192348 5195442 Pput_2810 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268126.1 3191785 D 351746 CDS YP_001268127.1 148548025 5190234 3192335..3192928 1 NC_009512.1 hypothetical protein 3192928 5190234 Pput_2811 Pseudomonas putida F1 hypothetical protein YP_001268127.1 3192335 D 351746 CDS YP_001268128.1 148548026 5190235 complement(3193287..3194288) 1 NC_009512.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 3194288 5190235 Pput_2812 Pseudomonas putida F1 bile acid:sodium symporter YP_001268128.1 3193287 R 351746 CDS YP_001268129.1 148548027 5192335 3194396..3195538 1 NC_009512.1 PFAM: beta-lactamase; beta-lactamase 3195538 ampC 5192335 ampC Pseudomonas putida F1 beta-lactamase YP_001268129.1 3194396 D 351746 CDS YP_001268130.1 148548028 5192336 3195839..3196171 1 NC_009512.1 hypothetical protein 3196171 5192336 Pput_2814 Pseudomonas putida F1 hypothetical protein YP_001268130.1 3195839 D 351746 CDS YP_001268131.1 148548029 5195094 complement(3196218..3196529) 1 NC_009512.1 hypothetical protein 3196529 5195094 Pput_2815 Pseudomonas putida F1 hypothetical protein YP_001268131.1 3196218 R 351746 CDS YP_001268132.1 148548030 5195095 complement(3196998..3197318) 1 NC_009512.1 PFAM: protein of unknown function DUF74; hypothetical protein 3197318 5195095 Pput_2816 Pseudomonas putida F1 hypothetical protein YP_001268132.1 3196998 R 351746 CDS YP_001268133.1 148548031 5192627 complement(3197389..3198273) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3198273 5192627 Pput_2817 Pseudomonas putida F1 hypothetical protein YP_001268133.1 3197389 R 351746 CDS YP_001268134.1 148548032 5192628 complement(3198436..3199191) 1 NC_009512.1 PFAM: class II aldolase/adducin family protein; aldolase II superfamily protein 3199191 5192628 Pput_2818 Pseudomonas putida F1 aldolase II superfamily protein YP_001268134.1 3198436 R 351746 CDS YP_001268135.1 148548033 5192058 complement(3199214..3200257) 1 NC_009512.1 spermidine/putrescine-binding periplasmic protein-like protein 3200257 5192058 Pput_2819 Pseudomonas putida F1 spermidine/putrescine-binding periplasmic protein-like protein YP_001268135.1 3199214 R 351746 CDS YP_001268136.1 148548034 5192059 3200431..3202383 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; NADH:flavin oxidoreductase 3202383 5192059 Pput_2820 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001268136.1 3200431 D 351746 CDS YP_001268137.1 148548035 5193207 3202423..3203022 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3203022 5193207 Pput_2821 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268137.1 3202423 D 351746 CDS YP_001268138.1 148548036 5193208 3203103..3204305 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3204305 5193208 Pput_2822 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001268138.1 3203103 D 351746 CDS YP_001268139.1 148548037 5193918 complement(3204374..3204985) 1 NC_009512.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 3204985 5193918 Pput_2823 Pseudomonas putida F1 azoreductase YP_001268139.1 3204374 R 351746 CDS YP_001268140.1 148548038 5193919 3205119..3206021 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3206021 5193919 Pput_2824 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268140.1 3205119 D 351746 CDS YP_001268141.1 148548039 5192131 3206014..3206373 1 NC_009512.1 PFAM: protein of unknown function DUF419; hypothetical protein 3206373 5192131 Pput_2825 Pseudomonas putida F1 hypothetical protein YP_001268141.1 3206014 D 351746 CDS YP_001268142.1 148548040 5192132 complement(3206432..3206845) 1 NC_009512.1 PFAM: protein of unknown function DUF1294; hypothetical protein 3206845 5192132 Pput_2826 Pseudomonas putida F1 hypothetical protein YP_001268142.1 3206432 R 351746 CDS YP_001268143.1 148548041 5194279 complement(3206838..3207668) 1 NC_009512.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3207668 5194279 Pput_2827 Pseudomonas putida F1 undecaprenyl pyrophosphate phosphatase YP_001268143.1 3206838 R 351746 CDS YP_001268144.1 148548042 5194280 3207969..3209603 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 3209603 5194280 Pput_2828 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268144.1 3207969 D 351746 CDS YP_001268145.1 148548043 5192824 3210153..3210719 1 NC_009512.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3210719 5192824 Pput_2829 Pseudomonas putida F1 nicotinamide mononucleotide transporter PnuC YP_001268145.1 3210153 D 351746 CDS YP_001268146.1 148548044 5192825 3210716..3211285 1 NC_009512.1 hypothetical protein 3211285 5192825 Pput_2830 Pseudomonas putida F1 hypothetical protein YP_001268146.1 3210716 D 351746 CDS YP_001268147.1 148548045 5191140 3211583..3212020 1 NC_009512.1 hypothetical protein 3212020 5191140 Pput_2831 Pseudomonas putida F1 hypothetical protein YP_001268147.1 3211583 D 351746 CDS YP_001268148.1 148548046 5191141 3212022..3212600 1 NC_009512.1 hypothetical protein 3212600 5191141 Pput_2832 Pseudomonas putida F1 hypothetical protein YP_001268148.1 3212022 D 351746 CDS YP_001268149.1 148548047 5192428 3212650..3214101 1 NC_009512.1 hypothetical protein 3214101 5192428 Pput_2833 Pseudomonas putida F1 hypothetical protein YP_001268149.1 3212650 D 351746 CDS YP_001268150.1 148548048 5192429 3214163..3214843 1 NC_009512.1 PFAM: peptidase C39, bacteriocin processing; peptidase C39, bacteriocin processing 3214843 5192429 Pput_2834 Pseudomonas putida F1 peptidase C39, bacteriocin processing YP_001268150.1 3214163 D 351746 CDS YP_001268151.1 148548049 5193984 3214889..3215641 1 NC_009512.1 hypothetical protein 3215641 5193984 Pput_2835 Pseudomonas putida F1 hypothetical protein YP_001268151.1 3214889 D 351746 CDS YP_001268152.1 148548050 5193985 3215688..3216968 1 NC_009512.1 hypothetical protein 3216968 5193985 Pput_2836 Pseudomonas putida F1 hypothetical protein YP_001268152.1 3215688 D 351746 CDS YP_001268153.1 148548051 5192601 3217104..3219305 1 NC_009512.1 PFAM: sulfatase; sulfatase 3219305 5192601 Pput_2837 Pseudomonas putida F1 sulfatase YP_001268153.1 3217104 D 351746 CDS YP_001268154.1 148548052 5192602 3219400..3220128 1 NC_009512.1 PFAM: protein of unknown function DUF899, thioredoxin family protein; hypothetical protein 3220128 5192602 Pput_2838 Pseudomonas putida F1 hypothetical protein YP_001268154.1 3219400 D 351746 CDS YP_001268155.1 148548053 5191733 complement(3220568..3223036) 1 NC_009512.1 SMART: phosphatidylinositol-specific phospholipase C, X region; phosphatidylinositol-specific phospholipase C, X region 3223036 5191733 Pput_2839 Pseudomonas putida F1 phosphatidylinositol-specific phospholipase C, X region YP_001268155.1 3220568 R 351746 CDS YP_001268156.1 148548054 5191734 complement(3223305..3223928) 1 NC_009512.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; urease accessory protein UreG 3223928 5191734 Pput_2840 Pseudomonas putida F1 urease accessory protein UreG YP_001268156.1 3223305 R 351746 CDS YP_001268157.1 148548055 5192960 complement(3223940..3224614) 1 NC_009512.1 PFAM: Urease accessory protein UreF; urease accessory protein UreF 3224614 5192960 Pput_2841 Pseudomonas putida F1 urease accessory protein UreF YP_001268157.1 3223940 R 351746 CDS YP_001268158.1 148548056 5192961 complement(3224614..3225159) 1 NC_009512.1 PFAM: HupE/UreJ protein; HupE/UreJ protein 3225159 5192961 Pput_2842 Pseudomonas putida F1 HupE/UreJ protein YP_001268158.1 3224614 R 351746 CDS YP_001268159.1 148548057 5190568 complement(3225178..3225681) 1 NC_009512.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3225681 ureE 5190568 ureE Pseudomonas putida F1 urease accessory protein UreE YP_001268159.1 3225178 R 351746 CDS YP_001268160.1 148548058 5190569 complement(3225691..3227394) 1 NC_009512.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3227394 ureC 5190569 ureC Pseudomonas putida F1 urease subunit alpha YP_001268160.1 3225691 R 351746 CDS YP_001268161.1 148548059 5190645 complement(3227391..3227744) 1 NC_009512.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 3227744 ureB 5190645 ureB Pseudomonas putida F1 urease subunit beta YP_001268161.1 3227391 R 351746 CDS YP_001268162.1 148548060 5190646 complement(3227728..3228030) 1 NC_009512.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3228030 ureA 5190646 ureA Pseudomonas putida F1 urease subunit gamma YP_001268162.1 3227728 R 351746 CDS YP_001268163.1 148548061 5195212 complement(3228040..3228876) 1 NC_009512.1 PFAM: Urease accessory protein UreD; urease accessory protein UreD 3228876 5195212 Pput_2847 Pseudomonas putida F1 urease accessory protein UreD YP_001268163.1 3228040 R 351746 CDS YP_001268164.1 148548062 5195213 complement(3229149..3230063) 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 3230063 5195213 Pput_2848 Pseudomonas putida F1 phage integrase family protein YP_001268164.1 3229149 R 351746 CDS YP_001268165.1 148548063 5193381 3230280..3231461 1 NC_009512.1 PFAM: NnrS family protein; NnrS family protein 3231461 5193381 Pput_2849 Pseudomonas putida F1 NnrS family protein YP_001268165.1 3230280 D 351746 CDS YP_001268166.1 148548064 5193382 complement(3231559..3233820) 1 NC_009512.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; DEAD/DEAH box helicase 3233820 5193382 Pput_2850 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001268166.1 3231559 R 351746 CDS YP_001268167.1 148548065 5193998 complement(3233817..3235466) 1 NC_009512.1 PFAM: VRR-NUC; VRR-NUC domain-containing protein 3235466 5193998 Pput_2851 Pseudomonas putida F1 VRR-NUC domain-containing protein YP_001268167.1 3233817 R 351746 CDS YP_001268168.1 148548066 5193999 complement(3235592..3236908) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3236908 5193999 Pput_2852 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268168.1 3235592 R 351746 CDS YP_001268169.1 148548067 5194742 complement(3236999..3238240) 1 NC_009512.1 fumarylacetoacetate (FAA) hydrolase family protein 3238240 5194742 Pput_2853 Pseudomonas putida F1 fumarylacetoacetate (FAA) hydrolase family protein YP_001268169.1 3236999 R 351746 CDS YP_001268170.1 148548068 5194743 complement(3238237..3239295) 1 NC_009512.1 PFAM: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 3239295 5194743 Pput_2854 Pseudomonas putida F1 malate/L-lactate dehydrogenase YP_001268170.1 3238237 R 351746 CDS YP_001268171.1 148548069 5195336 complement(3239331..3240872) 1 NC_009512.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; altronate dehydratase 3240872 5195336 Pput_2855 Pseudomonas putida F1 altronate dehydratase YP_001268171.1 3239331 R 351746 CDS YP_001268172.1 148548070 5195337 complement(3241019..3241990) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3241990 5195337 Pput_2856 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268172.1 3241019 R 351746 CDS YP_001268173.1 148548071 5193332 complement(3242018..3242965) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3242965 5193332 Pput_2857 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268173.1 3242018 R 351746 CDS YP_001268174.1 148548072 5193333 3243067..3244380 1 NC_009512.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 3244380 5193333 Pput_2858 Pseudomonas putida F1 mandelate racemase/muconate lactonizing protein YP_001268174.1 3243067 D 351746 CDS YP_001268175.1 148548073 5194976 3244447..3245748 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3245748 5194976 Pput_2859 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268175.1 3244447 D 351746 CDS YP_001268176.1 148548074 5194977 complement(3245876..3247231) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator 3247231 5194977 Pput_2860 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268176.1 3245876 R 351746 CDS YP_001268177.1 148548075 5193482 complement(3247231..3248616) 1 NC_009512.1 hypothetical protein 3248616 5193482 Pput_2861 Pseudomonas putida F1 hypothetical protein YP_001268177.1 3247231 R 351746 CDS YP_001268178.1 148548076 5193483 complement(3249134..3250156) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3250156 5193483 Pput_2862 Pseudomonas putida F1 alcohol dehydrogenase YP_001268178.1 3249134 R 351746 CDS YP_001268179.1 148548077 5191626 3250363..3251277 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3251277 5191626 Pput_2863 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268179.1 3250363 D 351746 CDS YP_001268180.1 148548078 5191627 3251545..3252702 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 3252702 5191627 Pput_2864 Pseudomonas putida F1 phage integrase family protein YP_001268180.1 3251545 D 351746 CDS YP_001268181.1 148548079 5194251 complement(3253810..3254592) 1 NC_009512.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; regulatory protein IclR 3254592 5194251 Pput_2866 Pseudomonas putida F1 regulatory protein IclR YP_001268181.1 3253810 R 351746 CDS YP_001268182.1 148548080 5195373 3254778..3255983 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3255983 5195373 Pput_2867 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001268182.1 3254778 D 351746 CDS YP_001268183.1 148548081 5194759 3255998..3259138 1 NC_009512.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3259138 5194759 Pput_2868 Pseudomonas putida F1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001268183.1 3255998 D 351746 CDS YP_001268184.1 148548082 5194760 3259135..3260577 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 3260577 5194760 Pput_2869 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001268184.1 3259135 D 351746 CDS YP_001268185.1 148548083 5193096 3260657..3260833 1 NC_009512.1 hypothetical protein 3260833 5193096 Pput_2870 Pseudomonas putida F1 hypothetical protein YP_001268185.1 3260657 D 351746 CDS YP_001268186.1 148548084 5193097 complement(3260962..3261582) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; response regulator receiver protein 3261582 5193097 Pput_2871 Pseudomonas putida F1 response regulator receiver protein YP_001268186.1 3260962 R 351746 CDS YP_001268187.1 148548085 5194483 complement(3261579..3264515) 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 3264515 5194483 Pput_2872 Pseudomonas putida F1 multi-sensor signal transduction histidine kinase YP_001268187.1 3261579 R 351746 CDS YP_001268188.1 148548086 5194484 complement(3264729..3265787) 1 NC_009512.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 3265787 5194484 Pput_2873 Pseudomonas putida F1 4-hydroxy-2-ketovalerate aldolase YP_001268188.1 3264729 R 351746 CDS YP_001268189.1 148548087 5193057 complement(3265798..3266748) 1 NC_009512.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 3266748 5193057 Pput_2874 Pseudomonas putida F1 acetaldehyde dehydrogenase YP_001268189.1 3265798 R 351746 CDS YP_001268190.1 148548088 5193058 complement(3266856..3267662) 1 NC_009512.1 PFAM: Hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 3267662 5193058 Pput_2875 Pseudomonas putida F1 4-oxalocrotonate decarboxylase YP_001268190.1 3266856 R 351746 CDS YP_001268191.1 148548089 5193758 complement(3267784..3268659) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3268659 5193758 Pput_2876 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001268191.1 3267784 R 351746 CDS YP_001268192.1 148548090 5193759 complement(3268675..3269502) 1 NC_009512.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 3269502 5193759 Pput_2877 Pseudomonas putida F1 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase YP_001268192.1 3268675 R 351746 CDS YP_001268193.1 148548091 5192603 complement(3269499..3270731) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3270731 5192603 Pput_2878 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001268193.1 3269499 R 351746 CDS YP_001268194.1 148548092 5192604 complement(3270731..3271054) 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 3271054 5192604 Pput_2879 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001268194.1 3270731 R 351746 CDS YP_001268195.1 148548093 5195398 complement(3271063..3271626) 1 NC_009512.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; toluene dioxygenase 3271626 5195398 Pput_2880 Pseudomonas putida F1 toluene dioxygenase YP_001268195.1 3271063 R 351746 CDS YP_001268196.1 148548094 5195399 complement(3271737..3273089) 1 NC_009512.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; ring hydroxylating dioxygenase subunit alpha 3273089 5195399 Pput_2881 Pseudomonas putida F1 ring hydroxylating dioxygenase subunit alpha YP_001268196.1 3271737 R 351746 CDS YP_001268197.1 148548095 5195342 complement(3273186..3274016) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3274016 5195342 Pput_2882 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001268197.1 3273186 R 351746 CDS YP_001268198.1 148548096 5195343 complement(3274042..3275403) 1 NC_009512.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3275403 5195343 Pput_2883 Pseudomonas putida F1 aromatic hydrocarbon degradation membrane protein YP_001268198.1 3274042 R 351746 CDS YP_001268199.1 148548097 5194479 3275718..3276020 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR family transcriptional regulator 3276020 5194479 Pput_2884 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268199.1 3275718 D 351746 CDS YP_001268200.1 148548098 5194480 complement(3276563..3276646) 1 NC_009512.1 hypothetical protein 3276646 5194480 Pput_2885 Pseudomonas putida F1 hypothetical protein YP_001268200.1 3276563 R 351746 CDS YP_001268201.1 148548099 5194252 complement(3277239..3278306) 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3278306 5194252 Pput_2887 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001268201.1 3277239 R 351746 CDS YP_001268202.1 148548100 5193991 complement(3278698..3279750) 1 NC_009512.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 3279750 5193991 Pput_2888 Pseudomonas putida F1 4-hydroxy-2-ketovalerate aldolase YP_001268202.1 3278698 R 351746 CDS YP_001268203.1 148548101 5192958 complement(3279763..3280707) 1 NC_009512.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 3280707 5192958 Pput_2889 Pseudomonas putida F1 acetaldehyde dehydrogenase YP_001268203.1 3279763 R 351746 CDS YP_001268204.1 148548102 5192959 complement(3280721..3281509) 1 NC_009512.1 PFAM: Hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 3281509 5192959 Pput_2890 Pseudomonas putida F1 4-oxalocrotonate decarboxylase YP_001268204.1 3280721 R 351746 CDS YP_001268205.1 148548103 5193185 complement(3281520..3282386) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3282386 5193185 Pput_2891 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001268205.1 3281520 R 351746 CDS YP_001268206.1 148548104 5193186 complement(3282504..3283127) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3283127 5193186 Pput_2892 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268206.1 3282504 R 351746 CDS YP_001268207.1 148548105 5195529 complement(3283248..3283979) 1 NC_009512.1 PFAM: class II aldolase/adducin family protein; class II aldolase/adducin family protein 3283979 5195529 Pput_2893 Pseudomonas putida F1 class II aldolase/adducin family protein YP_001268207.1 3283248 R 351746 CDS YP_001268208.1 148548106 5195530 complement(3283976..3284332) 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 3284332 5195530 Pput_2894 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001268208.1 3283976 R 351746 CDS YP_001268209.1 148548107 5191657 complement(3284343..3285122) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3285122 5191657 Pput_2895 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268209.1 3284343 R 351746 CDS YP_001268210.1 148548108 5191658 complement(3285119..3286057) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3286057 5191658 Pput_2896 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001268210.1 3285119 R 351746 CDS YP_001268211.1 148548109 5191069 complement(3286070..3286612) 1 NC_009512.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 3286612 5191069 Pput_2897 Pseudomonas putida F1 aromatic-ring-hydroxylating dioxygenase subunit beta YP_001268211.1 3286070 R 351746 CDS YP_001268212.1 148548110 5191070 complement(3286623..3287927) 1 NC_009512.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; ring hydroxylating dioxygenase subunit alpha 3287927 5191070 Pput_2898 Pseudomonas putida F1 ring hydroxylating dioxygenase subunit alpha YP_001268212.1 3286623 R 351746 CDS YP_001268213.1 148548111 5194668 complement(3287960..3289168) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3289168 5194668 Pput_2899 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001268213.1 3287960 R 351746 CDS YP_001268214.1 148548112 5194669 complement(3289375..3291324) 1 NC_009512.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 3291324 prpE 5194669 prpE Pseudomonas putida F1 propionyl-CoA synthetase YP_001268214.1 3289375 R 351746 CDS YP_001268215.1 148548113 5194459 complement(3291372..3292754) 1 NC_009512.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3292754 5194459 Pput_2901 Pseudomonas putida F1 aromatic hydrocarbon degradation membrane protein YP_001268215.1 3291372 R 351746 CDS YP_001268216.1 148548114 5194460 complement(3292791..3293840) 1 NC_009512.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 3293840 5194460 Pput_2902 Pseudomonas putida F1 oxidoreductase FAD-binding subunit YP_001268216.1 3292791 R 351746 CDS YP_001268217.1 148548115 5194638 complement(3294184..3295314) 1 NC_009512.1 PFAM: fatty acid desaturase; fatty acid desaturase 3295314 5194638 Pput_2903 Pseudomonas putida F1 fatty acid desaturase YP_001268217.1 3294184 R 351746 CDS YP_001268218.1 148548116 5194639 complement(3295369..3296853) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3296853 5194639 Pput_2904 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268218.1 3295369 R 351746 CDS YP_001268219.1 148548117 5193022 complement(3296904..3297662) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3297662 5193022 Pput_2905 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268219.1 3296904 R 351746 CDS YP_001268220.1 148548118 5193023 3297932..3298594 1 NC_009512.1 PFAM: dienelactone hydrolase; dienelactone hydrolase 3298594 5193023 Pput_2906 Pseudomonas putida F1 dienelactone hydrolase YP_001268220.1 3297932 D 351746 CDS YP_001268221.1 148548119 5193214 3298935..3299195 1 NC_009512.1 hypothetical protein 3299195 5193214 Pput_2907 Pseudomonas putida F1 hypothetical protein YP_001268221.1 3298935 D 351746 CDS YP_001268222.1 148548120 5193215 complement(3299506..3300126) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3300126 5193215 Pput_2908 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268222.1 3299506 R 351746 CDS YP_001268223.1 148548121 5194748 3300770..3300880 1 NC_009512.1 hypothetical protein 3300880 5194748 Pput_2910 Pseudomonas putida F1 hypothetical protein YP_001268223.1 3300770 D 351746 CDS YP_001268224.1 148548122 5191453 3300933..3301145 1 NC_009512.1 hypothetical protein 3301145 5191453 Pput_2911 Pseudomonas putida F1 hypothetical protein YP_001268224.1 3300933 D 351746 CDS YP_001268225.1 148548123 5191556 3301647..3302384 1 NC_009512.1 hypothetical protein 3302384 5191556 Pput_2912 Pseudomonas putida F1 hypothetical protein YP_001268225.1 3301647 D 351746 CDS YP_001268226.1 148548124 5191557 3302498..3302713 1 NC_009512.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3302713 5191557 Pput_2913 Pseudomonas putida F1 phage transcriptional regulator AlpA YP_001268226.1 3302498 D 351746 CDS YP_001268227.1 148548125 5190742 3302717..3303595 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3303595 5190742 Pput_2914 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001268227.1 3302717 D 351746 CDS YP_001268228.1 148548126 5190743 3303610..3305148 1 NC_009512.1 hypothetical protein 3305148 5190743 Pput_2915 Pseudomonas putida F1 hypothetical protein YP_001268228.1 3303610 D 351746 CDS YP_001268229.1 148548127 5194791 3305165..3305716 1 NC_009512.1 hypothetical protein 3305716 5194791 Pput_2916 Pseudomonas putida F1 hypothetical protein YP_001268229.1 3305165 D 351746 CDS YP_001268230.1 148548128 5194792 3305710..3306927 1 NC_009512.1 hypothetical protein 3306927 5194792 Pput_2917 Pseudomonas putida F1 hypothetical protein YP_001268230.1 3305710 D 351746 CDS YP_001268231.1 148548129 5191821 3307079..3307834 1 NC_009512.1 PFAM: Domain of unknown function DUF1845; hypothetical protein 3307834 5191821 Pput_2918 Pseudomonas putida F1 hypothetical protein YP_001268231.1 3307079 D 351746 CDS YP_001268232.1 148548130 5191822 3307831..3308325 1 NC_009512.1 hypothetical protein 3308325 5191822 Pput_2919 Pseudomonas putida F1 hypothetical protein YP_001268232.1 3307831 D 351746 CDS YP_001268233.1 148548131 5190716 3308331..3308759 1 NC_009512.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3308759 5190716 Pput_2920 Pseudomonas putida F1 single-stranded DNA-binding protein YP_001268233.1 3308331 D 351746 CDS YP_001268234.1 148548132 5190717 complement(3308854..3309117) 1 NC_009512.1 hypothetical protein 3309117 5190717 Pput_2921 Pseudomonas putida F1 hypothetical protein YP_001268234.1 3308854 R 351746 CDS YP_001268235.1 148548133 5190232 3309224..3309568 1 NC_009512.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 3309568 5190232 Pput_2922 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268235.1 3309224 D 351746 CDS YP_001268236.1 148548134 5190233 3309666..3311630 1 NC_009512.1 TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase III 3311630 5190233 Pput_2923 Pseudomonas putida F1 DNA topoisomerase III YP_001268236.1 3309666 D 351746 CDS YP_001268237.1 148548135 5194749 3312372..3312905 1 NC_009512.1 hypothetical protein 3312905 5194749 Pput_2925 Pseudomonas putida F1 hypothetical protein YP_001268237.1 3312372 D 351746 CDS YP_001268238.1 148548136 5190430 3312973..3313230 1 NC_009512.1 hypothetical protein 3313230 5190430 Pput_2926 Pseudomonas putida F1 hypothetical protein YP_001268238.1 3312973 D 351746 CDS YP_001268239.1 148548137 5191356 3313297..3313791 1 NC_009512.1 PFAM: DNA repair protein RadC; DNA repair protein RadC 3313791 5191356 Pput_2927 Pseudomonas putida F1 DNA repair protein RadC YP_001268239.1 3313297 D 351746 CDS YP_001268240.1 148548138 5191357 3313857..3314573 1 NC_009512.1 hypothetical protein 3314573 5191357 Pput_2928 Pseudomonas putida F1 hypothetical protein YP_001268240.1 3313857 D 351746 CDS YP_001268241.1 148548139 5194083 3314704..3315219 1 NC_009512.1 hypothetical protein 3315219 5194083 Pput_2929 Pseudomonas putida F1 hypothetical protein YP_001268241.1 3314704 D 351746 CDS YP_001268242.1 148548140 5194084 3315216..3315887 1 NC_009512.1 hypothetical protein 3315887 5194084 Pput_2930 Pseudomonas putida F1 hypothetical protein YP_001268242.1 3315216 D 351746 CDS YP_001268243.1 148548141 5192292 3315898..3316617 1 NC_009512.1 hypothetical protein 3316617 5192292 Pput_2931 Pseudomonas putida F1 hypothetical protein YP_001268243.1 3315898 D 351746 CDS YP_001268244.1 148548142 5192293 3316599..3317153 1 NC_009512.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 3317153 5192293 Pput_2932 Pseudomonas putida F1 lytic transglycosylase subunit YP_001268244.1 3316599 D 351746 CDS YP_001268245.1 148548143 5193819 3317150..3317569 1 NC_009512.1 hypothetical protein 3317569 5193819 Pput_2933 Pseudomonas putida F1 hypothetical protein YP_001268245.1 3317150 D 351746 CDS YP_001268246.1 148548144 5193820 3317579..3319705 1 NC_009512.1 hypothetical protein 3319705 5193820 Pput_2934 Pseudomonas putida F1 hypothetical protein YP_001268246.1 3317579 D 351746 CDS YP_001268247.1 148548145 5190978 3319740..3320468 1 NC_009512.1 hypothetical protein 3320468 5190978 Pput_2935 Pseudomonas putida F1 hypothetical protein YP_001268247.1 3319740 D 351746 CDS YP_001268248.1 148548146 5190979 complement(3320560..3320943) 1 NC_009512.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3320943 5190979 Pput_2936 Pseudomonas putida F1 glutathione-dependent formaldehyde-activating protein YP_001268248.1 3320560 R 351746 CDS YP_001268249.1 148548147 5195084 3321033..3321989 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3321989 5195084 Pput_2937 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268249.1 3321033 D 351746 CDS YP_001268250.1 148548148 5195085 complement(3322222..3322512) 1 NC_009512.1 hypothetical protein 3322512 5195085 Pput_2938 Pseudomonas putida F1 hypothetical protein YP_001268250.1 3322222 R 351746 CDS YP_001268251.1 148548149 5193203 complement(3323046..3323438) 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 3323438 5193203 Pput_2939 Pseudomonas putida F1 NUDIX hydrolase YP_001268251.1 3323046 R 351746 CDS YP_001268252.1 148548150 5193204 3323684..3324043 1 NC_009512.1 hypothetical protein 3324043 5193204 Pput_2940 Pseudomonas putida F1 hypothetical protein YP_001268252.1 3323684 D 351746 CDS YP_001268253.1 148548151 5190687 3324030..3324269 1 NC_009512.1 hypothetical protein 3324269 5190687 Pput_2941 Pseudomonas putida F1 hypothetical protein YP_001268253.1 3324030 D 351746 CDS YP_001268254.1 148548152 5190688 3324285..3324662 1 NC_009512.1 hypothetical protein 3324662 5190688 Pput_2942 Pseudomonas putida F1 hypothetical protein YP_001268254.1 3324285 D 351746 CDS YP_001268255.1 148548153 5194763 3324670..3325071 1 NC_009512.1 hypothetical protein 3325071 5194763 Pput_2943 Pseudomonas putida F1 hypothetical protein YP_001268255.1 3324670 D 351746 CDS YP_001268256.1 148548154 5194764 3325068..3325709 1 NC_009512.1 hypothetical protein 3325709 5194764 Pput_2944 Pseudomonas putida F1 hypothetical protein YP_001268256.1 3325068 D 351746 CDS YP_001268257.1 148548155 5194035 3325706..3326512 1 NC_009512.1 hypothetical protein 3326512 5194035 Pput_2945 Pseudomonas putida F1 hypothetical protein YP_001268257.1 3325706 D 351746 CDS YP_001268258.1 148548156 5194036 3326502..3328010 1 NC_009512.1 hypothetical protein 3328010 5194036 Pput_2946 Pseudomonas putida F1 hypothetical protein YP_001268258.1 3326502 D 351746 CDS YP_001268259.1 148548157 5191985 3327973..3328392 1 NC_009512.1 hypothetical protein 3328392 5191985 Pput_2947 Pseudomonas putida F1 hypothetical protein YP_001268259.1 3327973 D 351746 CDS YP_001268260.1 148548158 5191986 3328392..3331133 1 NC_009512.1 Type IV secretory pathway VirB4 components-like protein 3331133 5191986 Pput_2948 Pseudomonas putida F1 Type IV secretory pathway VirB4 components-like protein YP_001268260.1 3328392 D 351746 CDS YP_001268261.1 148548159 5192413 complement(3331271..3331480) 1 NC_009512.1 hypothetical protein 3331480 5192413 Pput_2949 Pseudomonas putida F1 hypothetical protein YP_001268261.1 3331271 R 351746 CDS YP_001268262.1 148548160 5192414 complement(3331462..3332736) 1 NC_009512.1 PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 3332736 5192414 Pput_2950 Pseudomonas putida F1 DNA-directed DNA polymerase YP_001268262.1 3331462 R 351746 CDS YP_001268263.1 148548161 5193030 complement(3332726..3333202) 1 NC_009512.1 PFAM: peptidase S24, S26A and S26B; putative prophage repressor 3333202 5193030 Pput_2951 Pseudomonas putida F1 putative prophage repressor YP_001268263.1 3332726 R 351746 CDS YP_001268264.1 148548162 5193031 3333257..3333985 1 NC_009512.1 PFAM: protein of unknown function DUF159; hypothetical protein 3333985 5193031 Pput_2952 Pseudomonas putida F1 hypothetical protein YP_001268264.1 3333257 D 351746 CDS YP_001268265.1 148548163 5193556 3334579..3335610 1 NC_009512.1 PFAM: protein of unknown function DUF1527; hypothetical protein 3335610 5193556 Pput_2953 Pseudomonas putida F1 hypothetical protein YP_001268265.1 3334579 D 351746 CDS YP_001268266.1 148548164 5193557 3335610..3336965 1 NC_009512.1 hypothetical protein 3336965 5193557 Pput_2954 Pseudomonas putida F1 hypothetical protein YP_001268266.1 3335610 D 351746 CDS YP_001268267.1 148548165 5190475 3336962..3337267 1 NC_009512.1 hypothetical protein 3337267 5190475 Pput_2955 Pseudomonas putida F1 hypothetical protein YP_001268267.1 3336962 D 351746 CDS YP_001268268.1 148548166 5190476 3337277..3338815 1 NC_009512.1 hypothetical protein 3338815 5190476 Pput_2956 Pseudomonas putida F1 hypothetical protein YP_001268268.1 3337277 D 351746 CDS YP_001268269.1 148548167 5193350 3339648..3340013 1 NC_009512.1 hypothetical protein 3340013 5193350 Pput_2957 Pseudomonas putida F1 hypothetical protein YP_001268269.1 3339648 D 351746 CDS YP_001268270.1 148548168 5193351 3340217..3340633 1 NC_009512.1 hypothetical protein 3340633 5193351 Pput_2958 Pseudomonas putida F1 hypothetical protein YP_001268270.1 3340217 D 351746 CDS YP_001268271.1 148548169 5190332 3340719..3341657 1 NC_009512.1 PFAM: domain of unknown function DUF1738; hypothetical protein 3341657 5190332 Pput_2959 Pseudomonas putida F1 hypothetical protein YP_001268271.1 3340719 D 351746 CDS YP_001268272.1 148548170 5190333 complement(3341744..3342109) 1 NC_009512.1 hypothetical protein 3342109 5190333 Pput_2960 Pseudomonas putida F1 hypothetical protein YP_001268272.1 3341744 R 351746 CDS YP_001268273.1 148548171 5190381 complement(3342234..3342437) 1 NC_009512.1 hypothetical protein 3342437 5190381 Pput_2961 Pseudomonas putida F1 hypothetical protein YP_001268273.1 3342234 R 351746 CDS YP_001268274.1 148548172 5190382 3342578..3344365 1 NC_009512.1 PFAM: protein of unknown function DUF1528; Relaxase; relaxase 3344365 5190382 Pput_2962 Pseudomonas putida F1 relaxase YP_001268274.1 3342578 D 351746 CDS YP_001268275.1 148548173 5192037 complement(3344453..3347242) 1 NC_009512.1 DNA repair ATPase-like protein 3347242 5192037 Pput_2963 Pseudomonas putida F1 DNA repair ATPase-like protein YP_001268275.1 3344453 R 351746 CDS YP_001268276.1 148548174 5192038 complement(3347235..3347804) 1 NC_009512.1 hypothetical protein 3347804 5192038 Pput_2964 Pseudomonas putida F1 hypothetical protein YP_001268276.1 3347235 R 351746 CDS YP_001268277.1 148548175 5191991 complement(3347794..3350061) 1 NC_009512.1 hypothetical protein 3350061 5191991 Pput_2965 Pseudomonas putida F1 hypothetical protein YP_001268277.1 3347794 R 351746 CDS YP_001268278.1 148548176 5191992 3352282..3352860 1 NC_009512.1 PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 3352860 5191992 Pput_2966 Pseudomonas putida F1 NAD(P)H dehydrogenase (quinone) YP_001268278.1 3352282 D 351746 CDS YP_001268279.1 148548177 5190943 3353027..3353410 1 NC_009512.1 PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 3353410 5190943 Pput_2967 Pseudomonas putida F1 MerR family transcriptional regulator YP_001268279.1 3353027 D 351746 CDS YP_001268280.1 148548178 5190944 complement(3353480..3356089) 1 NC_009512.1 RND efflux transporter 3356089 5190944 Pput_2968 Pseudomonas putida F1 RND efflux transporter YP_001268280.1 3353480 R 351746 CDS YP_001268281.1 148548179 5191352 complement(3356123..3356959) 1 NC_009512.1 putative sigma E regulatory protein, MucB/RseB 3356959 5191352 Pput_2969 Pseudomonas putida F1 putative sigma E regulatory protein, MucB/RseB YP_001268281.1 3356123 R 351746 CDS YP_001268282.1 148548180 5191353 complement(3357010..3358293) 1 NC_009512.1 hypothetical protein 3358293 5191353 Pput_2970 Pseudomonas putida F1 hypothetical protein YP_001268282.1 3357010 R 351746 CDS YP_001268283.1 148548181 5190389 complement(3358296..3359060) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3359060 5190389 Pput_2971 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268283.1 3358296 R 351746 CDS YP_001268284.1 148548182 5190390 complement(3359057..3359794) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3359794 5190390 Pput_2972 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268284.1 3359057 R 351746 CDS YP_001268285.1 148548183 5193813 complement(3359804..3362674) 1 NC_009512.1 PFAM: aminotransferase class-III; class III aminotransferase 3362674 5193813 Pput_2973 Pseudomonas putida F1 class III aminotransferase YP_001268285.1 3359804 R 351746 CDS YP_001268286.1 148548184 5193814 complement(3362713..3363924) 1 NC_009512.1 PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein 3363924 5193814 Pput_2974 Pseudomonas putida F1 beta-ketoacyl synthase-like protein YP_001268286.1 3362713 R 351746 CDS YP_001268287.1 148548185 5191767 complement(3363921..3365219) 1 NC_009512.1 PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein 3365219 5191767 Pput_2975 Pseudomonas putida F1 beta-ketoacyl synthase-like protein YP_001268287.1 3363921 R 351746 CDS YP_001268288.1 148548186 5191768 complement(3365216..3366298) 1 NC_009512.1 hypothetical protein 3366298 5191768 Pput_2976 Pseudomonas putida F1 hypothetical protein YP_001268288.1 3365216 R 351746 CDS YP_001268289.1 148548187 5193675 complement(3366300..3367574) 1 NC_009512.1 PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein 3367574 5193675 Pput_2977 Pseudomonas putida F1 beta-ketoacyl synthase-like protein YP_001268289.1 3366300 R 351746 CDS YP_001268290.1 148548188 5193676 complement(3367586..3368155) 1 NC_009512.1 hypothetical protein 3368155 5193676 Pput_2978 Pseudomonas putida F1 hypothetical protein YP_001268290.1 3367586 R 351746 CDS YP_001268291.1 148548189 5193671 complement(3368488..3369159) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3369159 5193671 Pput_2979 Pseudomonas putida F1 ABC transporter-like protein YP_001268291.1 3368488 R 351746 CDS YP_001268292.1 148548190 5193672 3369474..3369686 1 NC_009512.1 hypothetical protein 3369686 5193672 Pput_2980 Pseudomonas putida F1 hypothetical protein YP_001268292.1 3369474 D 351746 CDS YP_001268293.1 148548191 5190617 3369733..3370920 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 3370920 5190617 Pput_2981 Pseudomonas putida F1 type 2 acyl-CoA dehydrogenase YP_001268293.1 3369733 D 351746 CDS YP_001268294.1 148548192 5190618 3370929..3372032 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 3372032 5190618 Pput_2982 Pseudomonas putida F1 sigma-54 dependent trancsriptional regulator YP_001268294.1 3370929 D 351746 CDS YP_001268296.1 148548194 5193622 complement(3372244..3373569) 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 3373569 5193622 Pput_2984 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001268296.1 3372244 R 351746 CDS YP_001268297.1 148548195 5193474 complement(3373637..3374704) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3374704 5193474 Pput_2985 Pseudomonas putida F1 inner-membrane translocator YP_001268297.1 3373637 R 351746 CDS YP_001268298.1 148548196 5193475 complement(3374717..3375598) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3375598 5193475 Pput_2986 Pseudomonas putida F1 inner-membrane translocator YP_001268298.1 3374717 R 351746 CDS YP_001268299.1 148548197 5193468 complement(3375574..3376407) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3376407 5193468 Pput_2987 Pseudomonas putida F1 ABC transporter-like protein YP_001268299.1 3375574 R 351746 CDS YP_001268300.1 148548198 5193469 complement(3376417..3377547) 1 NC_009512.1 long-chain acyl-CoA synthetase-like protein 3377547 5193469 Pput_2988 Pseudomonas putida F1 long-chain acyl-CoA synthetase-like protein YP_001268300.1 3376417 R 351746 CDS YP_001268301.1 148548199 5192088 complement(3377559..3378650) 1 NC_009512.1 PFAM: luciferase family protein; luciferase family protein 3378650 5192088 Pput_2989 Pseudomonas putida F1 luciferase family protein YP_001268301.1 3377559 R 351746 CDS YP_001268302.1 148548200 5192089 complement(3378677..3379237) 1 NC_009512.1 PFAM: NADPH-dependent FMN reductase; FMN reductase 3379237 5192089 Pput_2990 Pseudomonas putida F1 FMN reductase YP_001268302.1 3378677 R 351746 CDS YP_001268303.1 148548201 5193633 3379576..3380814 1 NC_009512.1 PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 3380814 5193633 Pput_2991 Pseudomonas putida F1 type 2 acyl-CoA dehydrogenase YP_001268303.1 3379576 D 351746 CDS YP_001268304.1 148548202 5193634 complement(3380881..3381867) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3381867 5193634 Pput_2992 Pseudomonas putida F1 inner-membrane translocator YP_001268304.1 3380881 R 351746 CDS YP_001268305.1 148548203 5192365 complement(3381869..3382852) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3382852 5192365 Pput_2993 Pseudomonas putida F1 inner-membrane translocator YP_001268305.1 3381869 R 351746 CDS YP_001268306.1 148548204 5192366 complement(3382830..3384368) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3384368 5192366 Pput_2994 Pseudomonas putida F1 ABC transporter-like protein YP_001268306.1 3382830 R 351746 CDS YP_001268307.1 148548205 5190854 complement(3384365..3385393) 1 NC_009512.1 sugar ABC transporter periplasmic protein-like protein 3385393 5190854 Pput_2995 Pseudomonas putida F1 sugar ABC transporter periplasmic protein-like protein YP_001268307.1 3384365 R 351746 CDS YP_001268308.1 148548206 5190855 complement(3385390..3386361) 1 NC_009512.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 3386361 5190855 Pput_2996 Pseudomonas putida F1 periplasmic binding protein/LacI transcriptional regulator YP_001268308.1 3385390 R 351746 CDS YP_001268309.1 148548207 5192821 complement(3386358..3386744) 1 NC_009512.1 hypothetical protein 3386744 5192821 Pput_2997 Pseudomonas putida F1 hypothetical protein YP_001268309.1 3386358 R 351746 CDS YP_001268310.1 148548208 5192822 complement(3386754..3387986) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 3387986 5192822 Pput_2998 Pseudomonas putida F1 type 2 acyl-CoA dehydrogenase YP_001268310.1 3386754 R 351746 CDS YP_001268311.1 148548209 5191266 complement(3388334..3389683) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 3389683 5191266 Pput_2999 Pseudomonas putida F1 outer membrane porin YP_001268311.1 3388334 R 351746 CDS YP_001268312.1 148548210 5191267 complement(3389967..3390743) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3390743 5191267 Pput_3000 Pseudomonas putida F1 ABC transporter-like protein YP_001268312.1 3389967 R 351746 CDS YP_001268313.1 148548211 5191128 complement(3390860..3392194) 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 3392194 5191128 Pput_3001 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001268313.1 3390860 R 351746 CDS YP_001268314.1 148548212 5191129 complement(3392254..3393654) 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 3393654 5191129 Pput_3002 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001268314.1 3392254 R 351746 CDS YP_001268315.1 148548213 5191741 complement(3393673..3394737) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3394737 5191741 Pput_3003 Pseudomonas putida F1 inner-membrane translocator YP_001268315.1 3393673 R 351746 CDS YP_001268316.1 148548214 5191742 complement(3394742..3395623) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 3395623 5191742 Pput_3004 Pseudomonas putida F1 inner-membrane translocator YP_001268316.1 3394742 R 351746 CDS YP_001268317.1 148548215 5193635 complement(3395620..3396390) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3396390 5193635 Pput_3005 Pseudomonas putida F1 ABC transporter-like protein YP_001268317.1 3395620 R 351746 CDS YP_001268318.1 148548216 5193636 complement(3396387..3397358) 1 NC_009512.1 hypothetical protein 3397358 5193636 Pput_3006 Pseudomonas putida F1 hypothetical protein YP_001268318.1 3396387 R 351746 CDS YP_001268319.1 148548217 5191560 complement(3397379..3398788) 1 NC_009512.1 hypothetical protein 3398788 5191560 Pput_3007 Pseudomonas putida F1 hypothetical protein YP_001268319.1 3397379 R 351746 CDS YP_001268320.1 148548218 5191561 3399125..3400021 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 3400021 5191561 Pput_3008 Pseudomonas putida F1 UspA domain-containing protein YP_001268320.1 3399125 D 351746 CDS YP_001268321.1 148548219 5193661 3400117..3401076 1 NC_009512.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3401076 5193661 Pput_3009 Pseudomonas putida F1 ribose-phosphate pyrophosphokinase YP_001268321.1 3400117 D 351746 CDS YP_001268322.1 148548220 5193662 3401265..3401858 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3401858 5193662 Pput_3010 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268322.1 3401265 D 351746 CDS YP_001268323.1 148548221 5190275 3401855..3402214 1 NC_009512.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 3402214 5190275 Pput_3011 Pseudomonas putida F1 hypothetical protein YP_001268323.1 3401855 D 351746 CDS YP_001268324.1 148548222 5190276 3402282..3403919 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3403919 5190276 Pput_3012 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001268324.1 3402282 D 351746 CDS YP_001268325.1 148548223 5194928 complement(3404125..3405012) 1 NC_009512.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3405012 5194928 Pput_3013 Pseudomonas putida F1 MerR family transcriptional regulator YP_001268325.1 3404125 R 351746 CDS YP_001268326.1 148548224 5194929 3405166..3405612 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3405612 5194929 Pput_3014 Pseudomonas putida F1 putative PAS/PAC sensor protein YP_001268326.1 3405166 D 351746 CDS YP_001268327.1 148548225 5195286 3405716..3406138 1 NC_009512.1 PFAM: protein of unknown function DUF1486; hypothetical protein 3406138 5195286 Pput_3015 Pseudomonas putida F1 hypothetical protein YP_001268327.1 3405716 D 351746 CDS YP_001268328.1 148548226 5195287 3406135..3406887 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3406887 5195287 Pput_3016 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268328.1 3406135 D 351746 CDS YP_001268329.1 148548227 5194238 3406894..3408141 1 NC_009512.1 PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 3408141 5194238 Pput_3017 Pseudomonas putida F1 amine oxidase YP_001268329.1 3406894 D 351746 CDS YP_001268330.1 148548228 5194239 3408138..3408947 1 NC_009512.1 PFAM: protein of unknown function DUF1365; hypothetical protein 3408947 5194239 Pput_3018 Pseudomonas putida F1 hypothetical protein YP_001268330.1 3408138 D 351746 CDS YP_001268331.1 148548229 5190521 3408919..3410184 1 NC_009512.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 3410184 5190521 Pput_3019 Pseudomonas putida F1 cyclopropane-fatty-acyl-phospholipid synthase YP_001268331.1 3408919 D 351746 CDS YP_001268332.1 148548230 5190522 3410184..3410672 1 NC_009512.1 hypothetical protein 3410672 5190522 Pput_3020 Pseudomonas putida F1 hypothetical protein YP_001268332.1 3410184 D 351746 CDS YP_001268333.1 148548231 5195487 complement(3410610..3410792) 1 NC_009512.1 hypothetical protein 3410792 5195487 Pput_3021 Pseudomonas putida F1 hypothetical protein YP_001268333.1 3410610 R 351746 CDS YP_001268334.1 148548232 5195488 complement(3410789..3412315) 1 NC_009512.1 PFAM: deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 3412315 5195488 Pput_3022 Pseudomonas putida F1 deoxyribodipyrimidine photolyase-like protein YP_001268334.1 3410789 R 351746 CDS YP_001268335.1 148548233 5194835 complement(3412324..3412629) 1 NC_009512.1 hypothetical protein 3412629 5194835 Pput_3023 Pseudomonas putida F1 hypothetical protein YP_001268335.1 3412324 R 351746 CDS YP_001268336.1 148548234 5194836 complement(3412626..3413162) 1 NC_009512.1 hypothetical protein 3413162 5194836 Pput_3024 Pseudomonas putida F1 hypothetical protein YP_001268336.1 3412626 R 351746 CDS YP_001268337.1 148548235 5195364 complement(3413165..3413701) 1 NC_009512.1 hypothetical protein 3413701 5195364 Pput_3025 Pseudomonas putida F1 hypothetical protein YP_001268337.1 3413165 R 351746 CDS YP_001268338.1 148548236 5195365 3413861..3414352 1 NC_009512.1 PFAM: protein of unknown function DUF1543; hypothetical protein 3414352 5195365 Pput_3026 Pseudomonas putida F1 hypothetical protein YP_001268338.1 3413861 D 351746 CDS YP_001268339.1 148548237 5195374 3414431..3415201 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3415201 5195374 Pput_3027 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268339.1 3414431 D 351746 CDS YP_001268340.1 148548238 5195375 3415297..3415989 1 NC_009512.1 hypothetical protein 3415989 5195375 Pput_3028 Pseudomonas putida F1 hypothetical protein YP_001268340.1 3415297 D 351746 CDS YP_001268341.1 148548239 5195400 3416082..3416621 1 NC_009512.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 3416621 5195400 Pput_3029 Pseudomonas putida F1 PfpI family intracellular peptidase YP_001268341.1 3416082 D 351746 CDS YP_001268342.1 148548240 5195401 complement(3416678..3417235) 1 NC_009512.1 hypothetical protein 3417235 5195401 Pput_3030 Pseudomonas putida F1 hypothetical protein YP_001268342.1 3416678 R 351746 CDS YP_001268343.1 148548241 5192850 3417397..3418254 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3418254 5192850 Pput_3031 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268343.1 3417397 D 351746 CDS YP_001268344.1 148548242 5192851 3418424..3418888 1 NC_009512.1 PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 3418888 5192851 Pput_3032 Pseudomonas putida F1 hemerythrin HHE cation binding domain-containing protein YP_001268344.1 3418424 D 351746 CDS YP_001268345.1 148548243 5193268 3418885..3419184 1 NC_009512.1 hypothetical protein 3419184 5193268 Pput_3033 Pseudomonas putida F1 hypothetical protein YP_001268345.1 3418885 D 351746 CDS YP_001268346.1 148548244 5193269 3419280..3419717 1 NC_009512.1 PFAM: regulatory protein, ArsR; regulatory protein ArsR 3419717 5193269 Pput_3034 Pseudomonas putida F1 regulatory protein ArsR YP_001268346.1 3419280 D 351746 CDS YP_001268347.1 148548245 5193558 3419739..3421022 1 NC_009512.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; arsenical pump membrane protein 3421022 5193558 Pput_3035 Pseudomonas putida F1 arsenical pump membrane protein YP_001268347.1 3419739 D 351746 CDS YP_001268348.1 148548246 5193559 3421051..3421521 1 NC_009512.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 3421521 5193559 Pput_3036 Pseudomonas putida F1 protein tyrosine phosphatase YP_001268348.1 3421051 D 351746 CDS YP_001268349.1 148548247 5191016 3421535..3422236 1 NC_009512.1 TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase; arsenate resistance ArsH 3422236 5191016 Pput_3037 Pseudomonas putida F1 arsenate resistance ArsH YP_001268349.1 3421535 D 351746 CDS YP_001268350.1 148548248 5191017 complement(3422249..3423613) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3423613 5191017 Pput_3038 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268350.1 3422249 R 351746 CDS YP_001268351.1 148548249 5195185 complement(3423610..3424272) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3424272 5195185 Pput_3039 Pseudomonas putida F1 two component transcriptional regulator YP_001268351.1 3423610 R 351746 CDS YP_001268352.1 148548250 5195186 complement(3424275..3424916) 1 NC_009512.1 hypothetical protein 3424916 5195186 Pput_3040 Pseudomonas putida F1 hypothetical protein YP_001268352.1 3424275 R 351746 CDS YP_001268353.1 148548251 5190554 complement(3424913..3425719) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; short chain dehydrogenase 3425719 5190554 Pput_3041 Pseudomonas putida F1 short chain dehydrogenase YP_001268353.1 3424913 R 351746 CDS YP_001268354.1 148548252 5190555 complement(3425706..3426386) 1 NC_009512.1 hypothetical protein 3426386 5190555 Pput_3042 Pseudomonas putida F1 hypothetical protein YP_001268354.1 3425706 R 351746 CDS YP_001268355.1 148548253 5195463 complement(3426395..3427864) 1 NC_009512.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3427864 5195463 Pput_3043 Pseudomonas putida F1 AMP-dependent synthetase and ligase YP_001268355.1 3426395 R 351746 CDS YP_001268356.1 148548254 5195464 complement(3427854..3428534) 1 NC_009512.1 hypothetical protein 3428534 5195464 Pput_3044 Pseudomonas putida F1 hypothetical protein YP_001268356.1 3427854 R 351746 CDS YP_001268357.1 148548255 5190240 complement(3428651..3429448) 1 NC_009512.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 3429448 5190240 Pput_3045 Pseudomonas putida F1 exodeoxyribonuclease III YP_001268357.1 3428651 R 351746 CDS YP_001268358.1 148548256 5190241 complement(3429445..3429687) 1 NC_009512.1 hypothetical protein 3429687 5190241 Pput_3046 Pseudomonas putida F1 hypothetical protein YP_001268358.1 3429445 R 351746 CDS YP_001268359.1 148548257 5190876 complement(3429753..3430253) 1 NC_009512.1 hypothetical protein 3430253 5190876 Pput_3047 Pseudomonas putida F1 hypothetical protein YP_001268359.1 3429753 R 351746 CDS YP_001268360.1 148548258 5190877 complement(3430279..3431463) 1 NC_009512.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3431463 5190877 Pput_3048 Pseudomonas putida F1 amidohydrolase YP_001268360.1 3430279 R 351746 CDS YP_001268361.1 148548259 5194878 complement(3431465..3432766) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3432766 5194878 Pput_3049 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268361.1 3431465 R 351746 CDS YP_001268362.1 148548260 5194879 3433140..3434270 1 NC_009512.1 hypothetical protein 3434270 5194879 Pput_3050 Pseudomonas putida F1 hypothetical protein YP_001268362.1 3433140 D 351746 CDS YP_001268363.1 148548261 5190586 complement(3434247..3435185) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3435185 5190586 Pput_3051 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268363.1 3434247 R 351746 CDS YP_001268364.1 148548262 5190587 complement(3435272..3435772) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 3435772 5190587 Pput_3052 Pseudomonas putida F1 redoxin domain-containing protein YP_001268364.1 3435272 R 351746 CDS YP_001268365.1 148548263 5190328 3436004..3436987 1 NC_009512.1 PFAM: Domain of unknown function DUF1852; hypothetical protein 3436987 5190328 Pput_3053 Pseudomonas putida F1 hypothetical protein YP_001268365.1 3436004 D 351746 CDS YP_001268366.1 148548264 5190329 3437014..3438048 1 NC_009512.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3438048 5190329 Pput_3054 Pseudomonas putida F1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001268366.1 3437014 D 351746 CDS YP_001268367.1 148548265 5193440 3438074..3438583 1 NC_009512.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 3438583 5193440 Pput_3055 Pseudomonas putida F1 flavin reductase domain-containing protein YP_001268367.1 3438074 D 351746 CDS YP_001268368.1 148548266 5193441 3438682..3439611 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3439611 5193441 Pput_3056 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268368.1 3438682 D 351746 CDS YP_001268369.1 148548267 5190962 complement(3439677..3440564) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3440564 5190962 Pput_3057 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268369.1 3439677 R 351746 CDS YP_001268370.1 148548268 5190963 3440660..3442102 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3442102 5190963 Pput_3058 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268370.1 3440660 D 351746 CDS YP_001268371.1 148548269 5193578 3442116..3443102 1 NC_009512.1 PFAM: peptidase M19, renal dipeptidase; peptidase M19 3443102 5193578 Pput_3059 Pseudomonas putida F1 peptidase M19 YP_001268371.1 3442116 D 351746 CDS YP_001268372.1 148548270 5193579 3443158..3444708 1 NC_009512.1 PFAM: BCCT transporter; BCCT transporter 3444708 5193579 Pput_3060 Pseudomonas putida F1 BCCT transporter YP_001268372.1 3443158 D 351746 CDS YP_001268373.1 148548271 5194872 3444735..3446429 1 NC_009512.1 hypothetical protein 3446429 5194872 Pput_3061 Pseudomonas putida F1 hypothetical protein YP_001268373.1 3444735 D 351746 CDS YP_001268374.1 148548272 5194873 3446432..3447127 1 NC_009512.1 hypothetical protein 3447127 5194873 Pput_3062 Pseudomonas putida F1 hypothetical protein YP_001268374.1 3446432 D 351746 CDS YP_001268375.1 148548273 5194485 3447155..3447526 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 3447526 5194485 Pput_3063 Pseudomonas putida F1 endoribonuclease L-PSP YP_001268375.1 3447155 D 351746 CDS YP_001268376.1 148548274 5194486 3447560..3447862 1 NC_009512.1 hypothetical protein 3447862 5194486 Pput_3064 Pseudomonas putida F1 hypothetical protein YP_001268376.1 3447560 D 351746 CDS YP_001268377.1 148548275 5194955 3447960..3449369 1 NC_009512.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; hypothetical protein 3449369 5194955 Pput_3065 Pseudomonas putida F1 hypothetical protein YP_001268377.1 3447960 D 351746 CDS YP_001268378.1 148548276 5194956 3449373..3450323 1 NC_009512.1 PFAM: protein of unknown function DUF403; hypothetical protein 3450323 5194956 Pput_3066 Pseudomonas putida F1 hypothetical protein YP_001268378.1 3449373 D 351746 CDS YP_001268379.1 148548277 5194610 3450320..3451099 1 NC_009512.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 3451099 5194610 Pput_3067 Pseudomonas putida F1 transglutaminase domain-containing protein YP_001268379.1 3450320 D 351746 CDS YP_001268380.1 148548278 5194611 3451173..3451895 1 NC_009512.1 proteasome-type protease-like protein 3451895 5194611 Pput_3068 Pseudomonas putida F1 proteasome-type protease-like protein YP_001268380.1 3451173 D 351746 CDS YP_001268381.1 148548279 5192499 3452250..3453653 1 NC_009512.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter 3453653 5192499 Pput_3069 Pseudomonas putida F1 gluconate transporter YP_001268381.1 3452250 D 351746 CDS YP_001268382.1 148548280 5192500 3453688..3455037 1 NC_009512.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3455037 5192500 Pput_3070 Pseudomonas putida F1 D-serine dehydratase YP_001268382.1 3453688 D 351746 CDS YP_001268383.1 148548281 5194234 3455073..3456011 1 NC_009512.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3456011 5194234 Pput_3071 Pseudomonas putida F1 DNA-binding transcriptional regulator DsdC YP_001268383.1 3455073 D 351746 CDS YP_001268384.1 148548282 5194235 complement(3456041..3457408) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3457408 5194235 Pput_3072 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268384.1 3456041 R 351746 CDS YP_001268385.1 148548283 5195368 3457559..3458845 1 NC_009512.1 TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative 3458845 5195368 Pput_3073 Pseudomonas putida F1 hydroxymethylglutaryl-CoA reductase, degradative YP_001268385.1 3457559 D 351746 CDS YP_001268386.1 148548284 5195369 3458842..3459762 1 NC_009512.1 PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase 3459762 5195369 Pput_3074 Pseudomonas putida F1 pyruvate carboxyltransferase YP_001268386.1 3458842 D 351746 CDS YP_001268387.1 148548285 5194075 3459865..3460317 1 NC_009512.1 hypothetical protein 3460317 5194075 Pput_3075 Pseudomonas putida F1 hypothetical protein YP_001268387.1 3459865 D 351746 CDS YP_001268388.1 148548286 5194076 3460317..3461699 1 NC_009512.1 hypothetical protein 3461699 5194076 Pput_3076 Pseudomonas putida F1 hypothetical protein YP_001268388.1 3460317 D 351746 CDS YP_001268389.1 148548287 5194700 3461777..3463027 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 3463027 5194700 Pput_3077 Pseudomonas putida F1 outer membrane porin YP_001268389.1 3461777 D 351746 CDS YP_001268390.1 148548288 5194701 complement(3463167..3463910) 1 NC_009512.1 hypothetical protein 3463910 5194701 Pput_3078 Pseudomonas putida F1 hypothetical protein YP_001268390.1 3463167 R 351746 CDS YP_001268391.1 148548289 5191179 complement(3464409..3466079) 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 3466079 5191179 Pput_3079 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001268391.1 3464409 R 351746 CDS YP_001268392.1 148548290 5191180 complement(3466063..3467226) 1 NC_009512.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 3467226 5191180 Pput_3080 Pseudomonas putida F1 iron-containing alcohol dehydrogenase YP_001268392.1 3466063 R 351746 CDS YP_001268393.1 148548291 5195396 complement(3467316..3467588) 1 NC_009512.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 3467588 5195396 Pput_3081 Pseudomonas putida F1 pyrroloquinoline quinone biosynthesis protein PqqD YP_001268393.1 3467316 R 351746 CDS YP_001268394.1 148548292 5195397 complement(3467640..3467834) 1 NC_009512.1 PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A 3467834 5195397 Pput_3082 Pseudomonas putida F1 coenzyme PQQ biosynthesis protein A YP_001268394.1 3467640 R 351746 CDS YP_001268395.1 148548293 5191132 complement(3467942..3469462) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3469462 5191132 Pput_3083 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268395.1 3467942 R 351746 CDS YP_001268396.1 148548294 5191133 complement(3469780..3471567) 1 NC_009512.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3471567 5191133 Pput_3084 Pseudomonas putida F1 Pyrrolo-quinoline quinone YP_001268396.1 3469780 R 351746 CDS YP_001268397.1 148548295 5193067 complement(3471763..3472686) 1 NC_009512.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 3472686 5193067 Pput_3085 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001268397.1 3471763 R 351746 CDS YP_001268398.1 148548296 5193068 complement(3472725..3473486) 1 NC_009512.1 hypothetical protein 3473486 5193068 Pput_3086 Pseudomonas putida F1 hypothetical protein YP_001268398.1 3472725 R 351746 CDS YP_001268399.1 148548297 5195111 complement(3473495..3474370) 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3474370 5195111 Pput_3087 Pseudomonas putida F1 extracellular solute-binding protein YP_001268399.1 3473495 R 351746 CDS YP_001268400.1 148548298 5195112 complement(3474376..3474861) 1 NC_009512.1 PFAM: cytochrome c, class I; cytochrome c, class I 3474861 5195112 Pput_3088 Pseudomonas putida F1 cytochrome c, class I YP_001268400.1 3474376 R 351746 CDS YP_001268401.1 148548299 5192031 3475092..3476987 1 NC_009512.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3476987 5192031 Pput_3089 Pseudomonas putida F1 Pyrrolo-quinoline quinone YP_001268401.1 3475092 D 351746 CDS YP_001268402.1 148548300 5192032 3477054..3477713 1 NC_009512.1 PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 3477713 5192032 Pput_3090 Pseudomonas putida F1 pentapeptide repeat-containing protein YP_001268402.1 3477054 D 351746 CDS YP_001268403.1 148548301 5194299 complement(3477919..3478557) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 3478557 5194299 Pput_3091 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001268403.1 3477919 R 351746 CDS YP_001268404.1 148548302 5194300 complement(3478554..3479831) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 3479831 5194300 Pput_3092 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268404.1 3478554 R 351746 CDS YP_001268405.1 148548303 5195178 3479982..3481175 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 3481175 5195178 Pput_3093 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001268405.1 3479982 D 351746 CDS YP_001268406.1 148548304 5195179 3481206..3482195 1 NC_009512.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 3482195 5195179 Pput_3094 Pseudomonas putida F1 hypothetical protein YP_001268406.1 3481206 D 351746 CDS YP_001268407.1 148548305 5191647 3482192..3482932 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3482932 5191647 Pput_3095 Pseudomonas putida F1 ABC transporter-like protein YP_001268407.1 3482192 D 351746 CDS YP_001268408.1 148548306 5191648 3482929..3483720 1 NC_009512.1 PFAM: ABC-2 type transporter; ABC transporter 3483720 5191648 Pput_3096 Pseudomonas putida F1 ABC transporter YP_001268408.1 3482929 D 351746 CDS YP_001268409.1 148548307 5191162 3484205..3485014 1 NC_009512.1 PFAM: peptidase C26; peptidase C26 3485014 5191162 Pput_3097 Pseudomonas putida F1 peptidase C26 YP_001268409.1 3484205 D 351746 CDS YP_001268410.1 148548308 5191163 3485389..3486300 1 NC_009512.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 3486300 5191163 Pput_3098 Pseudomonas putida F1 5-dehydro-4-deoxyglucarate dehydratase YP_001268410.1 3485389 D 351746 CDS YP_001268411.1 148548309 5190572 3486406..3487770 1 NC_009512.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 3487770 5190572 Pput_3099 Pseudomonas putida F1 d-galactonate transporter YP_001268411.1 3486406 D 351746 CDS YP_001268412.1 148548310 5190573 3487848..3489401 1 NC_009512.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; galactarate dehydratase 3489401 5190573 Pput_3100 Pseudomonas putida F1 galactarate dehydratase YP_001268412.1 3487848 D 351746 CDS YP_001268413.1 148548311 5194467 3489460..3491040 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3491040 5194467 Pput_3101 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268413.1 3489460 D 351746 CDS YP_001268414.1 148548312 5194468 complement(3491174..3491923) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3491923 5194468 Pput_3102 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268414.1 3491174 R 351746 CDS YP_001268415.1 148548313 5193488 3492123..3492773 1 NC_009512.1 hypothetical protein 3492773 5193488 Pput_3103 Pseudomonas putida F1 hypothetical protein YP_001268415.1 3492123 D 351746 CDS YP_001268416.1 148548314 5193489 3492848..3493177 1 NC_009512.1 hypothetical protein 3493177 5193489 Pput_3104 Pseudomonas putida F1 hypothetical protein YP_001268416.1 3492848 D 351746 CDS YP_001268417.1 148548315 5193627 3493339..3494247 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3494247 5193627 Pput_3105 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268417.1 3493339 D 351746 CDS YP_001268418.1 148548316 5193628 complement(3494248..3494766) 1 NC_009512.1 PFAM: protein of unknown function DUF606; hypothetical protein 3494766 5193628 Pput_3106 Pseudomonas putida F1 hypothetical protein YP_001268418.1 3494248 R 351746 CDS YP_001268419.1 148548317 5194362 3494943..3495707 1 NC_009512.1 hypothetical protein 3495707 5194362 Pput_3107 Pseudomonas putida F1 hypothetical protein YP_001268419.1 3494943 D 351746 CDS YP_001268420.1 148548318 5194363 complement(3495855..3496436) 1 NC_009512.1 hypothetical protein 3496436 5194363 Pput_3108 Pseudomonas putida F1 hypothetical protein YP_001268420.1 3495855 R 351746 CDS YP_001268421.1 148548319 5192726 3496653..3498785 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3498785 5192726 Pput_3109 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001268421.1 3496653 D 351746 CDS YP_001268422.1 148548320 5192727 complement(3498870..3500162) 1 NC_009512.1 L-sorbosone dehydrogenase 3500162 5192727 Pput_3110 Pseudomonas putida F1 L-sorbosone dehydrogenase YP_001268422.1 3498870 R 351746 CDS YP_001268423.1 148548321 5194862 complement(3500159..3500554) 1 NC_009512.1 hypothetical protein 3500554 5194862 Pput_3111 Pseudomonas putida F1 hypothetical protein YP_001268423.1 3500159 R 351746 CDS YP_001268424.1 148548322 5194863 3500751..3501035 1 NC_009512.1 hypothetical protein 3501035 5194863 Pput_3112 Pseudomonas putida F1 hypothetical protein YP_001268424.1 3500751 D 351746 CDS YP_001268425.1 148548323 5190548 3501368..3504358 1 NC_009512.1 hypothetical protein 3504358 5190548 Pput_3113 Pseudomonas putida F1 hypothetical protein YP_001268425.1 3501368 D 351746 CDS YP_001268426.1 148548324 5190549 3504361..3505254 1 NC_009512.1 hypothetical protein 3505254 5190549 Pput_3114 Pseudomonas putida F1 hypothetical protein YP_001268426.1 3504361 D 351746 CDS YP_001268427.1 148548325 5193912 3505251..3505508 1 NC_009512.1 PFAM: PAAR repeat-containing protein; PAAR repeat-containing protein 3505508 5193912 Pput_3115 Pseudomonas putida F1 PAAR repeat-containing protein YP_001268427.1 3505251 D 351746 CDS YP_001268428.1 148548326 5193913 complement(3505659..3506429) 1 NC_009512.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; beta-ketoadipate pathway transcriptional regulator 3506429 5193913 Pput_3116 Pseudomonas putida F1 beta-ketoadipate pathway transcriptional regulator YP_001268428.1 3505659 R 351746 CDS YP_001268429.1 148548327 5195451 3506586..3507395 1 NC_009512.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate dehydrogenase 3507395 5195451 Pput_3117 Pseudomonas putida F1 shikimate dehydrogenase YP_001268429.1 3506586 D 351746 CDS YP_001268430.1 148548328 5195452 3507400..3509133 1 NC_009512.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3509133 5195452 Pput_3118 Pseudomonas putida F1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001268430.1 3507400 D 351746 CDS YP_001268431.1 148548329 5191552 3509118..3509438 1 NC_009512.1 PFAM: NIPSNAP family containing protein; NIPSNAP family protein 3509438 5191552 Pput_3119 Pseudomonas putida F1 NIPSNAP family protein YP_001268431.1 3509118 D 351746 CDS YP_001268432.1 148548330 5191553 3509480..3511168 1 NC_009512.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3511168 5191553 Pput_3120 Pseudomonas putida F1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001268432.1 3509480 D 351746 CDS YP_001268433.1 148548331 5190738 3511411..3512736 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3512736 5190738 Pput_3121 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268433.1 3511411 D 351746 CDS YP_001268434.1 148548332 5190739 complement(3512891..3513706) 1 NC_009512.1 PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 3513706 5190739 Pput_3122 Pseudomonas putida F1 xylose isomerase domain-containing protein YP_001268434.1 3512891 R 351746 CDS YP_001268435.1 148548333 5195541 complement(3513736..3514788) 1 NC_009512.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein 3514788 5195541 Pput_3123 Pseudomonas putida F1 oxidoreductase domain-containing protein YP_001268435.1 3513736 R 351746 CDS YP_001268436.1 148548334 5195542 complement(3514927..3515703) 1 NC_009512.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; IclR family transcriptional regulator 3515703 5195542 Pput_3124 Pseudomonas putida F1 IclR family transcriptional regulator YP_001268436.1 3514927 R 351746 CDS YP_001268437.1 148548335 5194163 3515900..3517612 1 NC_009512.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 3517612 5194163 Pput_3125 Pseudomonas putida F1 putative FAD-binding dehydrogenase YP_001268437.1 3515900 D 351746 CDS YP_001268438.1 148548336 5194164 complement(3517721..3520627) 1 NC_009512.1 PFAM: GAF domain protein; histidine kinase, HAMP region domain protein; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 3520627 5194164 Pput_3126 Pseudomonas putida F1 metal dependent phosphohydrolase YP_001268438.1 3517721 R 351746 CDS YP_001268439.1 148548337 5191512 complement(3520780..3522273) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3522273 5191512 Pput_3127 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268439.1 3520780 R 351746 CDS YP_001268440.1 148548338 5191513 complement(3522468..3523850) 1 NC_009512.1 PFAM: aminotransferase class-III; putative aminotransferase 3523850 5191513 Pput_3128 Pseudomonas putida F1 putative aminotransferase YP_001268440.1 3522468 R 351746 CDS YP_001268441.1 148548339 5192954 complement(3523893..3524804) 1 NC_009512.1 PFAM: regulatory protein, LuxR; LuxR family transcriptional regulator 3524804 5192954 Pput_3129 Pseudomonas putida F1 LuxR family transcriptional regulator YP_001268441.1 3523893 R 351746 CDS YP_001268442.1 148548340 5192955 3525018..3526400 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 3526400 5192955 Pput_3130 Pseudomonas putida F1 amino acid permease-associated protein YP_001268442.1 3525018 D 351746 CDS YP_001268443.1 148548341 5195101 3526555..3528135 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3528135 5195101 Pput_3131 Pseudomonas putida F1 aldehyde dehydrogenase YP_001268443.1 3526555 D 351746 CDS YP_001268444.1 148548342 5195102 3528272..3529669 1 NC_009512.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3529669 5195102 Pput_3132 Pseudomonas putida F1 hydroxydechloroatrazine ethylaminohydrolase YP_001268444.1 3528272 D 351746 CDS YP_001268445.1 148548343 5192006 complement(3529859..3530350) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3530350 5192006 Pput_3133 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268445.1 3529859 R 351746 CDS YP_001268446.1 148548344 5192007 3530513..3531103 1 NC_009512.1 PFAM: Haem oxygenase; heme oxygenase 3531103 5192007 Pput_3134 Pseudomonas putida F1 heme oxygenase YP_001268446.1 3530513 D 351746 CDS YP_001268447.1 148548345 5190399 3531111..3531677 1 NC_009512.1 hypothetical protein 3531677 5190399 Pput_3135 Pseudomonas putida F1 hypothetical protein YP_001268447.1 3531111 D 351746 CDS YP_001268448.1 148548346 5190400 complement(3531707..3531862) 1 NC_009512.1 hypothetical protein 3531862 5190400 Pput_3136 Pseudomonas putida F1 hypothetical protein YP_001268448.1 3531707 R 351746 CDS YP_001268449.1 148548347 5192240 3532074..3533828 1 NC_009512.1 PFAM: sulfatase; hypothetical protein 3533828 5192240 Pput_3137 Pseudomonas putida F1 hypothetical protein YP_001268449.1 3532074 D 351746 CDS YP_001268450.1 148548348 5192241 complement(3533839..3534369) 1 NC_009512.1 PFAM: protein of unknown function DUF330; hypothetical protein 3534369 5192241 Pput_3138 Pseudomonas putida F1 hypothetical protein YP_001268450.1 3533839 R 351746 CDS YP_001268451.1 148548349 5193500 complement(3534381..3536021) 1 NC_009512.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 3536021 5193500 Pput_3139 Pseudomonas putida F1 hypothetical protein YP_001268451.1 3534381 R 351746 CDS YP_001268452.1 148548350 5193501 complement(3536021..3536650) 1 NC_009512.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 3536650 5193501 Pput_3140 Pseudomonas putida F1 paraquat-inducible protein A YP_001268452.1 3536021 R 351746 CDS YP_001268453.1 148548351 5193590 complement(3536647..3537243) 1 NC_009512.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 3537243 5193590 Pput_3141 Pseudomonas putida F1 paraquat-inducible protein A YP_001268453.1 3536647 R 351746 CDS YP_001268454.1 148548352 5193591 3537394..3537867 1 NC_009512.1 hypothetical protein 3537867 5193591 Pput_3142 Pseudomonas putida F1 hypothetical protein YP_001268454.1 3537394 D 351746 CDS YP_001268455.1 148548353 5192580 complement(3537917..3538870) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3538870 5192580 Pput_3143 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268455.1 3537917 R 351746 CDS YP_001268456.1 148548354 5192581 3539100..3539486 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3539486 5192581 Pput_3144 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001268456.1 3539100 D 351746 CDS YP_001268457.1 148548355 5190722 3539528..3540097 1 NC_009512.1 hypothetical protein 3540097 5190722 Pput_3145 Pseudomonas putida F1 hypothetical protein YP_001268457.1 3539528 D 351746 CDS YP_001268458.1 148548356 5190723 complement(3540274..3541953) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 3541953 5190723 Pput_3146 Pseudomonas putida F1 general substrate transporter YP_001268458.1 3540274 R 351746 CDS YP_001268459.1 148548357 5194183 complement(3542215..3542634) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3542634 5194183 Pput_3147 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001268459.1 3542215 R 351746 CDS YP_001268460.1 148548358 5194184 complement(3542710..3543636) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3543636 5194184 Pput_3148 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001268460.1 3542710 R 351746 CDS YP_001268461.1 148548359 5193588 3543666..3548708 1 NC_009512.1 PFAM: leucine-rich repeat protein; hypothetical protein 3548708 5193588 Pput_3149 Pseudomonas putida F1 hypothetical protein YP_001268461.1 3543666 D 351746 CDS YP_001268462.1 148548360 5193589 complement(3548716..3551220) 1 NC_009512.1 PFAM: UvrD/REP helicase; UvrD/REP helicase 3551220 5193589 Pput_3150 Pseudomonas putida F1 UvrD/REP helicase YP_001268462.1 3548716 R 351746 CDS YP_001268463.1 148548361 5190421 3551406..3552104 1 NC_009512.1 PFAM: Pirin domain protein domain protein; pirin domain-containing protein 3552104 5190421 Pput_3151 Pseudomonas putida F1 pirin domain-containing protein YP_001268463.1 3551406 D 351746 CDS YP_001268464.1 148548362 5190422 3552321..3555092 1 NC_009512.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; amino acid adenylation domain-containing protein 3555092 5190422 Pput_3152 Pseudomonas putida F1 amino acid adenylation domain-containing protein YP_001268464.1 3552321 D 351746 CDS YP_001268465.1 148548363 5190796 complement(3555120..3555605) 1 NC_009512.1 related to nicotinamidase; hypothetical protein 3555605 5190796 Pput_3153 Pseudomonas putida F1 hypothetical protein YP_001268465.1 3555120 R 351746 CDS YP_001268466.1 148548364 5190797 complement(3555766..3566625) 1 NC_009512.1 PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; heme peroxidase 3566625 5190797 Pput_3154 Pseudomonas putida F1 heme peroxidase YP_001268466.1 3555766 R 351746 CDS YP_001268467.1 148548365 5194057 3567138..3568874 1 NC_009512.1 TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 3568874 5194057 Pput_3155 Pseudomonas putida F1 type I secretion system ATPase YP_001268467.1 3567138 D 351746 CDS YP_001268468.1 148548366 5194058 3568881..3570221 1 NC_009512.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 3570221 5194058 Pput_3156 Pseudomonas putida F1 HlyD family type I secretion membrane fusion protein YP_001268468.1 3568881 D 351746 CDS YP_001268469.1 148548367 5190814 3570223..3571551 1 NC_009512.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 3571551 5190814 Pput_3157 Pseudomonas putida F1 TolC family type I secretion outer membrane protein YP_001268469.1 3570223 D 351746 CDS YP_001268470.1 148548368 5190815 3571767..3572630 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3572630 5190815 Pput_3158 Pseudomonas putida F1 PAS/PAC sensor-containing diguanylate cyclase YP_001268470.1 3571767 D 351746 CDS YP_001268471.1 148548369 5192382 3572648..3574000 1 NC_009512.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 3574000 5192382 Pput_3159 Pseudomonas putida F1 chromate transporter YP_001268471.1 3572648 D 351746 CDS YP_001268472.1 148548370 5192383 3574012..3574680 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3574680 5192383 Pput_3160 Pseudomonas putida F1 type 12 methyltransferase YP_001268472.1 3574012 D 351746 CDS YP_001268473.1 148548371 5193303 complement(3574749..3576656) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; 4-hydroxyphenylpyruvate dioxygenase 3576656 5193303 Pput_3161 Pseudomonas putida F1 4-hydroxyphenylpyruvate dioxygenase YP_001268473.1 3574749 R 351746 CDS YP_001268474.1 148548372 5193304 3576946..3578319 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3578319 5193304 Pput_3162 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268474.1 3576946 D 351746 CDS YP_001268475.1 148548373 5193344 complement(3578433..3579869) 1 NC_009512.1 PFAM: Pyridoxal-dependent decarboxylase; aromatic-L-amino-acid decarboxylase 3579869 5193344 Pput_3163 Pseudomonas putida F1 aromatic-L-amino-acid decarboxylase YP_001268475.1 3578433 R 351746 CDS YP_001268476.1 148548374 5193345 complement(3579994..3580938) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; Helix-turn-helix, type 11 domain protein; LysR family transcriptional regulator 3580938 5193345 Pput_3164 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268476.1 3579994 R 351746 CDS YP_001268477.1 148548375 5190415 complement(3581076..3581789) 1 NC_009512.1 PFAM: protein of unknown function DUF28; hypothetical protein 3581789 5190415 Pput_3165 Pseudomonas putida F1 hypothetical protein YP_001268477.1 3581076 R 351746 CDS YP_001268478.1 148548376 5190416 complement(3581887..3583278) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3583278 5190416 Pput_3166 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001268478.1 3581887 R 351746 CDS YP_001268479.1 148548377 5192279 complement(3583293..3584609) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3584609 5192279 Pput_3167 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268479.1 3583293 R 351746 CDS YP_001268480.1 148548378 5192280 3584853..3585749 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3585749 5192280 Pput_3168 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268480.1 3584853 D 351746 CDS YP_001268481.1 148548379 5193681 3585774..3586145 1 NC_009512.1 hypothetical protein 3586145 5193681 Pput_3169 Pseudomonas putida F1 hypothetical protein YP_001268481.1 3585774 D 351746 CDS YP_001268482.1 148548380 5193682 complement(3586135..3586911) 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; trans-aconitate 2-methyltransferase 3586911 5193682 Pput_3170 Pseudomonas putida F1 trans-aconitate 2-methyltransferase YP_001268482.1 3586135 R 351746 CDS YP_001268483.1 148548381 5190905 complement(3587209..3588621) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 3588621 5190905 Pput_3171 Pseudomonas putida F1 amino acid permease-associated protein YP_001268483.1 3587209 R 351746 CDS YP_001268484.1 148548382 5190906 3588947..3590371 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3590371 5190906 Pput_3172 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268484.1 3588947 D 351746 CDS YP_001268485.1 148548383 5192482 3591129..3591419 1 NC_009512.1 hypothetical protein 3591419 5192482 Pput_3174 Pseudomonas putida F1 hypothetical protein YP_001268485.1 3591129 D 351746 CDS YP_001268486.1 148548384 5192483 3591755..3592318 1 NC_009512.1 hypothetical protein 3592318 5192483 Pput_3176 Pseudomonas putida F1 hypothetical protein YP_001268486.1 3591755 D 351746 CDS YP_001268487.1 148548385 5191958 complement(3592330..3593106) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3593106 5191958 Pput_3177 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268487.1 3592330 R 351746 CDS YP_001268488.1 148548386 5191959 complement(3593274..3594200) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3594200 5191959 Pput_3178 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268488.1 3593274 R 351746 CDS YP_001268489.1 148548387 5195187 complement(3594327..3595034) 1 NC_009512.1 hypothetical protein 3595034 5195187 Pput_3179 Pseudomonas putida F1 hypothetical protein YP_001268489.1 3594327 R 351746 CDS YP_001268490.1 148548388 5195188 complement(3595129..3595431) 1 NC_009512.1 hypothetical protein 3595431 5195188 Pput_3180 Pseudomonas putida F1 hypothetical protein YP_001268490.1 3595129 R 351746 CDS YP_001268491.1 148548389 5190792 3595630..3596253 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3596253 5190792 Pput_3181 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001268491.1 3595630 D 351746 CDS YP_001268492.1 148548390 5190793 complement(3596307..3597482) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3597482 5190793 Pput_3182 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268492.1 3596307 R 351746 CDS YP_001268493.1 148548391 5190974 3597577..3598476 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3598476 5190974 Pput_3183 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268493.1 3597577 D 351746 CDS YP_001268494.1 148548392 5190975 complement(3598526..3599149) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3599149 5190975 Pput_3184 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268494.1 3598526 R 351746 CDS YP_001268495.1 148548393 5194622 3599279..3600961 1 NC_009512.1 PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase 3 3600961 5194622 Pput_3185 Pseudomonas putida F1 amidohydrolase 3 YP_001268495.1 3599279 D 351746 CDS YP_001268496.1 148548394 5194623 3600976..3602133 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3602133 5194623 Pput_3186 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268496.1 3600976 D 351746 CDS YP_001268497.1 148548395 5190336 3602244..3603221 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 3603221 5190336 Pput_3187 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001268497.1 3602244 D 351746 CDS YP_001268498.1 148548396 5190337 complement(3603246..3603671) 1 NC_009512.1 hypothetical protein 3603671 5190337 Pput_3188 Pseudomonas putida F1 hypothetical protein YP_001268498.1 3603246 R 351746 CDS YP_001268499.1 148548397 5193169 3603874..3604869 1 NC_009512.1 PFAM: 5-nucleotidase; 5'-nucleotidase 3604869 5193169 Pput_3189 Pseudomonas putida F1 5'-nucleotidase YP_001268499.1 3603874 D 351746 CDS YP_001268500.1 148548398 5193170 complement(3604983..3605240) 1 NC_009512.1 hypothetical protein 3605240 5193170 Pput_3190 Pseudomonas putida F1 hypothetical protein YP_001268500.1 3604983 R 351746 CDS YP_001268501.1 148548399 5194608 3605365..3606642 1 NC_009512.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 3606642 5194608 Pput_3191 Pseudomonas putida F1 O-acetylhomoserine aminocarboxypropyltransferase YP_001268501.1 3605365 D 351746 CDS YP_001268502.1 148548400 5194609 3606708..3607472 1 NC_009512.1 hypothetical protein 3607472 5194609 Pput_3192 Pseudomonas putida F1 hypothetical protein YP_001268502.1 3606708 D 351746 CDS YP_001268503.1 148548401 5190452 complement(3607554..3608027) 1 NC_009512.1 hypothetical protein 3608027 5190452 Pput_3193 Pseudomonas putida F1 hypothetical protein YP_001268503.1 3607554 R 351746 CDS YP_001268504.1 148548402 5190453 3608174..3609337 1 NC_009512.1 ATPase-like protein 3609337 5190453 Pput_3194 Pseudomonas putida F1 ATPase-like protein YP_001268504.1 3608174 D 351746 CDS YP_001268505.1 148548403 5193340 complement(3609366..3610106) 1 NC_009512.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 3610106 5193340 Pput_3195 Pseudomonas putida F1 metal dependent phosphohydrolase YP_001268505.1 3609366 R 351746 CDS YP_001268506.1 148548404 5193341 3610276..3612687 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3612687 5193341 Pput_3196 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001268506.1 3610276 D 351746 CDS YP_001268507.1 148548405 5192915 complement(3612727..3613635) 1 NC_009512.1 catalyzes the formation of glutamate from glutamine; glutaminase 3613635 5192915 Pput_3197 Pseudomonas putida F1 glutaminase YP_001268507.1 3612727 R 351746 CDS YP_001268508.1 148548406 5192916 complement(3613714..3613839) 1 NC_009512.1 hypothetical protein 3613839 5192916 Pput_3198 Pseudomonas putida F1 hypothetical protein YP_001268508.1 3613714 R 351746 CDS YP_001268509.1 148548407 5190878 3614027..3615376 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3615376 5190878 Pput_3199 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268509.1 3614027 D 351746 CDS YP_001268510.1 148548408 5190879 3615398..3616660 1 NC_009512.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase 3616660 5190879 Pput_3200 Pseudomonas putida F1 protocatechuate 4,5-dioxygenase YP_001268510.1 3615398 D 351746 CDS YP_001268511.1 148548409 5194073 3616792..3618039 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 3618039 5194073 Pput_3201 Pseudomonas putida F1 outer membrane porin YP_001268511.1 3616792 D 351746 CDS YP_001268512.1 148548410 5194074 complement(3618055..3619248) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3619248 5194074 Pput_3202 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268512.1 3618055 R 351746 CDS YP_001268513.1 148548411 5193148 3619408..3620142 1 NC_009512.1 PFAM: LmbE family protein; LmbE family protein 3620142 5193148 Pput_3203 Pseudomonas putida F1 LmbE family protein YP_001268513.1 3619408 D 351746 CDS YP_001268514.1 148548412 5193149 3620139..3620855 1 NC_009512.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 3620855 5193149 Pput_3204 Pseudomonas putida F1 hypothetical protein YP_001268514.1 3620139 D 351746 CDS YP_001268515.1 148548413 5195017 3620858..3621943 1 NC_009512.1 PFAM: protein of unknown function DUF453; hypothetical protein 3621943 5195017 Pput_3205 Pseudomonas putida F1 hypothetical protein YP_001268515.1 3620858 D 351746 CDS YP_001268516.1 148548414 5195018 complement(3621967..3622425) 1 NC_009512.1 hypothetical protein 3622425 5195018 Pput_3206 Pseudomonas putida F1 hypothetical protein YP_001268516.1 3621967 R 351746 CDS YP_001268517.1 148548415 5192879 complement(3622496..3623056) 1 NC_009512.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 3623056 5192879 Pput_3207 Pseudomonas putida F1 GTP cyclohydrolase I YP_001268517.1 3622496 R 351746 CDS YP_001268518.1 148548416 5192880 complement(3623041..3623454) 1 NC_009512.1 PFAM: putative thiol-disulphide oxidoreductase DCC; putative thiol-disulfide oxidoreductase DCC 3623454 5192880 Pput_3208 Pseudomonas putida F1 putative thiol-disulfide oxidoreductase DCC YP_001268518.1 3623041 R 351746 CDS YP_001268519.1 148548417 5191002 complement(3623603..3624379) 1 NC_009512.1 hypothetical protein 3624379 5191002 Pput_3209 Pseudomonas putida F1 hypothetical protein YP_001268519.1 3623603 R 351746 CDS YP_001268520.1 148548418 5191003 3624436..3624714 1 NC_009512.1 hypothetical protein 3624714 5191003 Pput_3210 Pseudomonas putida F1 hypothetical protein YP_001268520.1 3624436 D 351746 CDS YP_001268521.1 148548419 5192780 3625200..3625442 1 NC_009512.1 hypothetical protein 3625442 5192780 Pput_3211 Pseudomonas putida F1 hypothetical protein YP_001268521.1 3625200 D 351746 CDS YP_001268522.1 148548420 5192781 3625594..3625857 1 NC_009512.1 hypothetical protein 3625857 5192781 Pput_3212 Pseudomonas putida F1 hypothetical protein YP_001268522.1 3625594 D 351746 CDS YP_001268523.1 148548421 5194146 complement(3625918..3626472) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3626472 5194146 Pput_3213 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268523.1 3625918 R 351746 CDS YP_001268524.1 148548422 5194147 complement(3626571..3627377) 1 NC_009512.1 PFAM: HNH endonuclease; HNH endonuclease 3627377 5194147 Pput_3214 Pseudomonas putida F1 HNH endonuclease YP_001268524.1 3626571 R 351746 CDS YP_001268525.1 148548423 5194438 complement(3627776..3628492) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3628492 5194438 Pput_3215 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268525.1 3627776 R 351746 CDS YP_001268526.1 148548424 5194439 complement(3628538..3629023) 1 NC_009512.1 hypothetical protein 3629023 5194439 Pput_3216 Pseudomonas putida F1 hypothetical protein YP_001268526.1 3628538 R 351746 CDS YP_001268527.1 148548425 5191655 3629390..3630427 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; diguanylate cyclase 3630427 5191655 Pput_3217 Pseudomonas putida F1 diguanylate cyclase YP_001268527.1 3629390 D 351746 CDS YP_001268528.1 148548426 5192438 complement(3631001..3631357) 1 NC_009512.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3631357 5192438 Pput_3218 Pseudomonas putida F1 MerR family transcriptional regulator YP_001268528.1 3631001 R 351746 CDS YP_001268529.1 148548427 5195092 complement(3631338..3631640) 1 NC_009512.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3631640 ihfA 5195092 ihfA Pseudomonas putida F1 integration host factor subunit alpha YP_001268529.1 3631338 R 351746 CDS YP_001268530.1 148548428 5195093 complement(3631645..3634026) 1 NC_009512.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 3634026 pheT 5195093 pheT Pseudomonas putida F1 phenylalanyl-tRNA synthetase subunit beta YP_001268530.1 3631645 R 351746 CDS YP_001268531.1 148548429 5193512 complement(3634058..3635074) 1 NC_009512.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 3635074 pheS 5193512 pheS Pseudomonas putida F1 phenylalanyl-tRNA synthetase subunit alpha YP_001268531.1 3634058 R 351746 CDS YP_001268532.1 148548430 5193513 complement(3635184..3635540) 1 NC_009512.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3635540 rplT 5193513 rplT Pseudomonas putida F1 50S ribosomal protein L20 YP_001268532.1 3635184 R 351746 CDS YP_001268533.1 148548431 5195048 complement(3635568..3635762) 1 NC_009512.1 PFAM: ribosomal protein L35; 50S ribosomal protein L35 3635762 rpmI 5195048 rpmI Pseudomonas putida F1 50S ribosomal protein L35 YP_001268533.1 3635568 R 351746 CDS YP_001268534.1 148548432 5195049 complement(3635823..3636374) 1 NC_009512.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 3636374 infC 5195049 infC Pseudomonas putida F1 translation initiation factor IF-3 YP_001268534.1 3635823 R 351746 CDS YP_001268535.1 148548433 5190286 complement(3636374..3638296) 1 NC_009512.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3638296 thrS 5190286 thrS Pseudomonas putida F1 threonyl-tRNA synthetase YP_001268535.1 3636374 R 351746 CDS YP_001268536.1 148548434 5190287 3638635..3638940 1 NC_009512.1 hypothetical protein 3638940 5190287 Pput_3226 Pseudomonas putida F1 hypothetical protein YP_001268536.1 3638635 D 351746 CDS YP_001268537.1 148548435 5191670 3639103..3639315 1 NC_009512.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3639315 5191670 Pput_3227 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001268537.1 3639103 D 351746 CDS YP_001268538.1 148548436 5191671 complement(3639516..3639836) 1 NC_009512.1 hypothetical protein 3639836 5191671 Pput_3228 Pseudomonas putida F1 hypothetical protein YP_001268538.1 3639516 R 351746 CDS YP_001268539.1 148548437 5191100 3640111..3640323 1 NC_009512.1 hypothetical protein 3640323 5191100 Pput_3229 Pseudomonas putida F1 hypothetical protein YP_001268539.1 3640111 D 351746 CDS YP_001268540.1 148548438 5191101 complement(3640295..3641296) 1 NC_009512.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 3641296 5191101 Pput_3230 Pseudomonas putida F1 inosine/uridine-preferring nucleoside hydrolase YP_001268540.1 3640295 R 351746 CDS YP_001268541.1 148548439 5194324 complement(3641361..3641759) 1 NC_009512.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 3641759 5194324 Pput_3231 Pseudomonas putida F1 D-ribose pyranase YP_001268541.1 3641361 R 351746 CDS YP_001268542.1 148548440 5194325 complement(3641756..3642664) 1 NC_009512.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; ribokinase 3642664 5194325 Pput_3232 Pseudomonas putida F1 ribokinase YP_001268542.1 3641756 R 351746 CDS YP_001268543.1 148548441 5193508 complement(3642680..3643702) 1 NC_009512.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase 3643702 5193508 Pput_3233 Pseudomonas putida F1 alanine racemase YP_001268543.1 3642680 R 351746 CDS YP_001268544.1 148548442 5193509 complement(3643707..3644702) 1 NC_009512.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 3644702 5193509 Pput_3234 Pseudomonas putida F1 monosaccharide-transporting ATPase YP_001268544.1 3643707 R 351746 CDS YP_001268545.1 148548443 5193156 complement(3644699..3646252) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3646252 5193156 Pput_3235 Pseudomonas putida F1 ABC transporter-like protein YP_001268545.1 3644699 R 351746 CDS YP_001268546.1 148548444 5193157 complement(3646273..3647232) 1 NC_009512.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase 3647232 5193157 Pput_3236 Pseudomonas putida F1 monosaccharide-transporting ATPase YP_001268546.1 3646273 R 351746 CDS YP_001268547.1 148548445 5194909 3647600..3648688 1 NC_009512.1 TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase 3648688 5194909 Pput_3237 Pseudomonas putida F1 L-asparaginase YP_001268547.1 3647600 D 351746 CDS YP_001268548.1 148548446 5194910 complement(3648812..3650686) 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; putative PAS/PAC sensor protein 3650686 5194910 Pput_3238 Pseudomonas putida F1 putative PAS/PAC sensor protein YP_001268548.1 3648812 R 351746 CDS YP_001268549.1 148548447 5191640 3650887..3651327 1 NC_009512.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 3651327 5191640 Pput_3239 Pseudomonas putida F1 cyanate hydratase YP_001268549.1 3650887 D 351746 CDS YP_001268550.1 148548448 5191641 3651391..3652215 1 NC_009512.1 PFAM: formate/nitrite transporter; formate/nitrite transporter 3652215 5191641 Pput_3240 Pseudomonas putida F1 formate/nitrite transporter YP_001268550.1 3651391 D 351746 CDS YP_001268551.1 148548449 5194874 3652406..3652678 1 NC_009512.1 PFAM: protein of unknown function DUF1654; hypothetical protein 3652678 5194874 Pput_3241 Pseudomonas putida F1 hypothetical protein YP_001268551.1 3652406 D 351746 CDS YP_001268552.1 148548450 5194875 3652685..3653377 1 NC_009512.1 PFAM: Endonuclease I; deoxyribonuclease I 3653377 5194875 Pput_3242 Pseudomonas putida F1 deoxyribonuclease I YP_001268552.1 3652685 D 351746 CDS YP_001268553.1 148548451 5190653 complement(3653381..3653827) 1 NC_009512.1 hypothetical protein 3653827 5190653 Pput_3243 Pseudomonas putida F1 hypothetical protein YP_001268553.1 3653381 R 351746 CDS YP_001268554.1 148548452 5190654 complement(3653985..3654554) 1 NC_009512.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 3654554 5190654 Pput_3244 Pseudomonas putida F1 sporulation domain-containing protein YP_001268554.1 3653985 R 351746 CDS YP_001268555.1 148548453 5194187 3655215..3656498 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3656498 5194187 Pput_3245 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001268555.1 3655215 D 351746 CDS YP_001268556.1 148548454 5191758 complement(3656610..3657344) 1 NC_009512.1 hypothetical protein 3657344 5191758 Pput_3246 Pseudomonas putida F1 hypothetical protein YP_001268556.1 3656610 R 351746 CDS YP_001268557.1 148548455 5192361 3657511..3657684 1 NC_009512.1 hypothetical protein 3657684 5192361 Pput_3247 Pseudomonas putida F1 hypothetical protein YP_001268557.1 3657511 D 351746 CDS YP_001268558.1 148548456 5192362 complement(3657814..3658566) 1 NC_009512.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 3658566 5192362 Pput_3248 Pseudomonas putida F1 integral membrane protein TerC YP_001268558.1 3657814 R 351746 CDS YP_001268559.1 148548457 5190511 complement(3658595..3658867) 1 NC_009512.1 hypothetical protein 3658867 5190511 Pput_3249 Pseudomonas putida F1 hypothetical protein YP_001268559.1 3658595 R 351746 CDS YP_001268560.1 148548458 5190512 3658967..3659860 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR family transcriptional regulator 3659860 5190512 Pput_3250 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268560.1 3658967 D 351746 CDS YP_001268561.1 148548459 5193002 3659958..3661169 1 NC_009512.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3661169 5193002 Pput_3251 Pseudomonas putida F1 serine/threonine transporter SstT YP_001268561.1 3659958 D 351746 CDS YP_001268562.1 148548460 5193003 3661258..3661902 1 NC_009512.1 PFAM: protein of unknown function DUF480; hypothetical protein 3661902 5193003 Pput_3252 Pseudomonas putida F1 hypothetical protein YP_001268562.1 3661258 D 351746 CDS YP_001268563.1 148548461 5192550 complement(3661907..3662095) 1 NC_009512.1 hypothetical protein 3662095 5192550 Pput_3253 Pseudomonas putida F1 hypothetical protein YP_001268563.1 3661907 R 351746 CDS YP_001268564.1 148548462 5192551 complement(3662185..3662391) 1 NC_009512.1 hypothetical protein 3662391 5192551 Pput_3254 Pseudomonas putida F1 hypothetical protein YP_001268564.1 3662185 R 351746 CDS YP_001268565.1 148548463 5191642 complement(3662413..3663975) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase subunit F 3663975 5191642 Pput_3255 Pseudomonas putida F1 alkyl hydroperoxide reductase subunit F YP_001268565.1 3662413 R 351746 CDS YP_001268566.1 148548464 5191643 complement(3664100..3664663) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 3664663 5191643 Pput_3256 Pseudomonas putida F1 alkyl hydroperoxide reductase YP_001268566.1 3664100 R 351746 CDS YP_001268567.1 148548465 5190984 3664985..3666049 1 NC_009512.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 3666049 5190984 Pput_3257 Pseudomonas putida F1 integral membrane protein TerC YP_001268567.1 3664985 D 351746 CDS YP_001268568.1 148548466 5190985 complement(3666145..3667374) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 3667374 5190985 Pput_3258 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001268568.1 3666145 R 351746 CDS YP_001268569.1 148548467 5195272 3667515..3668438 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3668438 5195272 Pput_3259 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268569.1 3667515 D 351746 CDS YP_001268570.1 148548468 5195273 3668590..3669786 1 NC_009512.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; class V aminotransferase 3669786 5195273 Pput_3260 Pseudomonas putida F1 class V aminotransferase YP_001268570.1 3668590 D 351746 CDS YP_001268571.1 148548469 5194095 complement(3669955..3670392) 1 NC_009512.1 PFAM: RES; RES domain-containing protein 3670392 5194095 Pput_3261 Pseudomonas putida F1 RES domain-containing protein YP_001268571.1 3669955 R 351746 CDS YP_001268572.1 148548470 5194096 complement(3670389..3670964) 1 NC_009512.1 hypothetical protein 3670964 5194096 Pput_3262 Pseudomonas putida F1 hypothetical protein YP_001268572.1 3670389 R 351746 CDS YP_001268573.1 148548471 5190852 complement(3670981..3671634) 1 NC_009512.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3671634 5190852 Pput_3263 Pseudomonas putida F1 dihydropteridine reductase YP_001268573.1 3670981 R 351746 CDS YP_001268574.1 148548472 5190853 3671732..3672661 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3672661 5190853 Pput_3264 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268574.1 3671732 D 351746 CDS YP_001268575.1 148548473 5190848 3672710..3673540 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3673540 5190848 Pput_3265 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268575.1 3672710 D 351746 CDS YP_001268576.1 148548474 5190849 3673592..3674176 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3674176 5190849 Pput_3266 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001268576.1 3673592 D 351746 CDS YP_001268577.1 148548475 5192803 complement(3674216..3675457) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; sugar efflux transporter 3675457 5192803 Pput_3267 Pseudomonas putida F1 sugar efflux transporter YP_001268577.1 3674216 R 351746 CDS YP_001268578.1 148548476 5192804 3675621..3676937 1 NC_009512.1 hypothetical protein 3676937 5192804 Pput_3268 Pseudomonas putida F1 hypothetical protein YP_001268578.1 3675621 D 351746 CDS YP_001268579.1 148548477 5191683 complement(3677048..3678100) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3678100 5191683 Pput_3269 Pseudomonas putida F1 alcohol dehydrogenase YP_001268579.1 3677048 R 351746 CDS YP_001268580.1 148548478 5191684 3678282..3679187 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator 3679187 5191684 Pput_3270 Pseudomonas putida F1 AraC-like transcriptional regulator YP_001268580.1 3678282 D 351746 CDS YP_001268581.1 148548479 5191899 complement(3679251..3679796) 1 NC_009512.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase, HXTX; 2'-5' RNA ligase 3679796 5191899 Pput_3271 Pseudomonas putida F1 2'-5' RNA ligase YP_001268581.1 3679251 R 351746 CDS YP_001268582.1 148548480 5191900 3679955..3680854 1 NC_009512.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 3680854 5191900 Pput_3272 Pseudomonas putida F1 aspartyl/asparaginyl beta-hydroxylase YP_001268582.1 3679955 D 351746 CDS YP_001268583.1 148548481 5194031 3680973..3681317 1 NC_009512.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3681317 5194031 Pput_3273 Pseudomonas putida F1 alkylhydroperoxidase YP_001268583.1 3680973 D 351746 CDS YP_001268584.1 148548482 5194032 3681396..3681965 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3681965 5194032 Pput_3274 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268584.1 3681396 D 351746 CDS YP_001268585.1 148548483 5190818 3682336..3684564 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3684564 5190818 Pput_3275 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001268585.1 3682336 D 351746 CDS YP_001268586.1 148548484 5190819 3684682..3685848 1 NC_009512.1 hypothetical protein 3685848 5190819 Pput_3276 Pseudomonas putida F1 hypothetical protein YP_001268586.1 3684682 D 351746 CDS YP_001268587.1 148548485 5190433 3686186..3687196 1 NC_009512.1 PFAM: periplasmic binding protein; periplasmic binding protein 3687196 5190433 Pput_3277 Pseudomonas putida F1 periplasmic binding protein YP_001268587.1 3686186 D 351746 CDS YP_001268588.1 148548486 5190434 3687196..3688212 1 NC_009512.1 PFAM: transport system permease protein; ABC-3 protein; transport system permease 3688212 5190434 Pput_3278 Pseudomonas putida F1 transport system permease YP_001268588.1 3687196 D 351746 CDS YP_001268589.1 148548487 5190964 3688209..3688997 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3688997 5190964 Pput_3279 Pseudomonas putida F1 ABC transporter-like protein YP_001268589.1 3688209 D 351746 CDS YP_001268590.1 148548488 5190965 complement(3689054..3689551) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3689551 5190965 Pput_3280 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268590.1 3689054 R 351746 CDS YP_001268591.1 148548489 5193933 3689685..3690164 1 NC_009512.1 hypothetical protein 3690164 5193933 Pput_3281 Pseudomonas putida F1 hypothetical protein YP_001268591.1 3689685 D 351746 CDS YP_001268592.1 148548490 5193934 3690224..3691795 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache domain protein; diguanylate cyclase 3691795 5193934 Pput_3282 Pseudomonas putida F1 diguanylate cyclase YP_001268592.1 3690224 D 351746 CDS YP_001268593.1 148548491 5192724 3691939..3692730 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3692730 5192724 Pput_3283 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001268593.1 3691939 D 351746 CDS YP_001268594.1 148548492 5192725 3692911..3694248 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3694248 5192725 Pput_3284 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268594.1 3692911 D 351746 CDS YP_001268595.1 148548493 5194107 complement(3694281..3697427) 1 NC_009512.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 3697427 5194107 Pput_3285 Pseudomonas putida F1 CzcA family heavy metal efflux protein YP_001268595.1 3694281 R 351746 CDS YP_001268596.1 148548494 5194108 complement(3697444..3698658) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3698658 5194108 Pput_3286 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001268596.1 3697444 R 351746 CDS YP_001268597.1 148548495 5195467 complement(3698651..3700045) 1 NC_009512.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 3700045 5195467 Pput_3287 Pseudomonas putida F1 outer membrane efflux protein YP_001268597.1 3698651 R 351746 CDS YP_001268598.1 148548496 5195468 3700158..3700616 1 NC_009512.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3700616 5195468 Pput_3288 Pseudomonas putida F1 3-dehydroquinate dehydratase YP_001268598.1 3700158 D 351746 CDS YP_001268599.1 148548497 5194144 3700613..3701461 1 NC_009512.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3701461 5194144 Pput_3289 Pseudomonas putida F1 shikimate 5-dehydrogenase YP_001268599.1 3700613 D 351746 CDS YP_001268600.1 148548498 5194145 complement(3701580..3702116) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 3702116 5194145 Pput_3290 Pseudomonas putida F1 redoxin domain-containing protein YP_001268600.1 3701580 R 351746 CDS YP_001268601.1 148548499 5190357 complement(3702106..3702402) 1 NC_009512.1 hypothetical protein 3702402 5190357 Pput_3291 Pseudomonas putida F1 hypothetical protein YP_001268601.1 3702106 R 351746 CDS YP_001268602.1 148548500 5190358 3702602..3703342 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3703342 5190358 Pput_3292 Pseudomonas putida F1 two component transcriptional regulator YP_001268602.1 3702602 D 351746 CDS YP_001268603.1 148548501 5193566 3703339..3704625 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3704625 5193566 Pput_3293 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268603.1 3703339 D 351746 CDS YP_001268604.1 148548502 5193567 3704790..3705407 1 NC_009512.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; ferric reductase domain-containing protein 3705407 5193567 Pput_3294 Pseudomonas putida F1 ferric reductase domain-containing protein YP_001268604.1 3704790 D 351746 CDS YP_001268605.1 148548503 5191805 3705422..3705910 1 NC_009512.1 PFAM: DoxX family protein; DoxX family protein 3705910 5191805 Pput_3295 Pseudomonas putida F1 DoxX family protein YP_001268605.1 3705422 D 351746 CDS YP_001268606.1 148548504 5191806 complement(3705944..3706639) 1 NC_009512.1 hypothetical protein 3706639 5191806 Pput_3296 Pseudomonas putida F1 hypothetical protein YP_001268606.1 3705944 R 351746 CDS YP_001268607.1 148548505 5190594 complement(3706632..3707465) 1 NC_009512.1 PFAM: protein of unknown function DUF692; hypothetical protein 3707465 5190594 Pput_3297 Pseudomonas putida F1 hypothetical protein YP_001268607.1 3706632 R 351746 CDS YP_001268608.1 148548506 5190595 complement(3707540..3708196) 1 NC_009512.1 hypothetical protein 3708196 5190595 Pput_3298 Pseudomonas putida F1 hypothetical protein YP_001268608.1 3707540 R 351746 CDS YP_001268609.1 148548507 5193010 complement(3708206..3708757) 1 NC_009512.1 hypothetical protein 3708757 5193010 Pput_3299 Pseudomonas putida F1 hypothetical protein YP_001268609.1 3708206 R 351746 CDS YP_001268610.1 148548508 5193011 complement(3708986..3713476) 1 NC_009512.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein 3713476 5193011 Pput_3300 Pseudomonas putida F1 hypothetical protein YP_001268610.1 3708986 R 351746 CDS YP_001268611.1 148548509 5192913 complement(3713574..3717995) 1 NC_009512.1 PFAM: leucine-rich repeat protein; hypothetical protein 3717995 5192913 Pput_3301 Pseudomonas putida F1 hypothetical protein YP_001268611.1 3713574 R 351746 CDS YP_001268612.1 148548510 5192914 complement(3718074..3720434) 1 NC_009512.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 3720434 5192914 Pput_3302 Pseudomonas putida F1 DNA polymerase II YP_001268612.1 3718074 R 351746 CDS YP_001268613.1 148548511 5195027 complement(3720501..3721691) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3721691 5195027 Pput_3303 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268613.1 3720501 R 351746 CDS YP_001268614.1 148548512 5195028 3721764..3722705 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3722705 5195028 Pput_3304 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268614.1 3721764 D 351746 CDS YP_001268615.1 148548513 5195521 complement(3722686..3723606) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3723606 5195521 Pput_3305 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268615.1 3722686 R 351746 CDS YP_001268616.1 148548514 5195522 3723767..3724555 1 NC_009512.1 PFAM: Protein of unknown function, YqcI/YcgG; hypothetical protein 3724555 5195522 Pput_3306 Pseudomonas putida F1 hypothetical protein YP_001268616.1 3723767 D 351746 CDS YP_001268617.1 148548515 5193504 3724558..3725184 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3725184 5193504 Pput_3307 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001268617.1 3724558 D 351746 CDS YP_001268618.1 148548516 5193505 3725224..3726306 1 NC_009512.1 hypothetical protein 3726306 5193505 Pput_3308 Pseudomonas putida F1 hypothetical protein YP_001268618.1 3725224 D 351746 CDS YP_001268619.1 148548517 5190537 3726439..3727140 1 NC_009512.1 hypothetical protein 3727140 5190537 Pput_3309 Pseudomonas putida F1 hypothetical protein YP_001268619.1 3726439 D 351746 CDS YP_001268620.1 148548518 5190538 3727288..3727980 1 NC_009512.1 PFAM: AzlC family protein; AzlC family protein 3727980 5190538 Pput_3310 Pseudomonas putida F1 AzlC family protein YP_001268620.1 3727288 D 351746 CDS YP_001268621.1 148548519 5190808 3727977..3728291 1 NC_009512.1 PFAM: branched-chain amino acid transport; branched-chain amino acid transport 3728291 5190808 Pput_3311 Pseudomonas putida F1 branched-chain amino acid transport YP_001268621.1 3727977 D 351746 CDS YP_001268622.1 148548520 5190809 3728288..3729133 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3729133 5190809 Pput_3312 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268622.1 3728288 D 351746 CDS YP_001268623.1 148548521 5193883 complement(3729182..3730399) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3730399 5193883 Pput_3313 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268623.1 3729182 R 351746 CDS YP_001268624.1 148548522 5193884 3730856..3731083 1 NC_009512.1 hypothetical protein 3731083 5193884 Pput_3314 Pseudomonas putida F1 hypothetical protein YP_001268624.1 3730856 D 351746 CDS YP_001268625.1 148548523 5194795 complement(3731131..3731613) 1 NC_009512.1 PFAM: protein of unknown function DUF461; hypothetical protein 3731613 5194795 Pput_3315 Pseudomonas putida F1 hypothetical protein YP_001268625.1 3731131 R 351746 CDS YP_001268626.1 148548524 5194796 complement(3731614..3732285) 1 NC_009512.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3732285 5194796 Pput_3316 Pseudomonas putida F1 electron transport protein SCO1/SenC YP_001268626.1 3731614 R 351746 CDS YP_001268627.1 148548525 5195465 complement(3732419..3733003) 1 NC_009512.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; HesB/YadR/YfhF-family protein 3733003 5195465 Pput_3317 Pseudomonas putida F1 HesB/YadR/YfhF-family protein YP_001268627.1 3732419 R 351746 CDS YP_001268628.1 148548526 5195466 complement(3733062..3734096) 1 NC_009512.1 PFAM: acyltransferase 3; acyltransferase 3 3734096 5195466 Pput_3318 Pseudomonas putida F1 acyltransferase 3 YP_001268628.1 3733062 R 351746 CDS YP_001268629.1 148548527 5194065 complement(3734292..3736679) 1 NC_009512.1 PFAM: fatty acid cistrans isomerase; fatty acid cistrans isomerase 3736679 5194065 Pput_3319 Pseudomonas putida F1 fatty acid cistrans isomerase YP_001268629.1 3734292 R 351746 CDS YP_001268630.1 148548528 5194066 3736776..3740483 1 NC_009512.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 3740483 metH 5194066 metH Pseudomonas putida F1 B12-dependent methionine synthase YP_001268630.1 3736776 D 351746 CDS YP_001268631.1 148548529 5193856 3740653..3740868 1 NC_009512.1 hypothetical protein 3740868 5193856 Pput_3321 Pseudomonas putida F1 hypothetical protein YP_001268631.1 3740653 D 351746 CDS YP_001268632.1 148548530 5193857 complement(3741029..3741142) 1 NC_009512.1 hypothetical protein 3741142 5193857 Pput_3322 Pseudomonas putida F1 hypothetical protein YP_001268632.1 3741029 R 351746 CDS YP_001268633.1 148548531 5192685 complement(3741228..3742304) 1 NC_009512.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 3742304 5192685 Pput_3323 Pseudomonas putida F1 periplasmic binding protein/LacI transcriptional regulator YP_001268633.1 3741228 R 351746 CDS YP_001268634.1 148548532 5192686 3742518..3744170 1 NC_009512.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase (ferredoxin) 3744170 5192686 Pput_3324 Pseudomonas putida F1 sulfite reductase (ferredoxin) YP_001268634.1 3742518 D 351746 CDS YP_001268635.1 148548533 5191523 3744154..3744648 1 NC_009512.1 PFAM: uncharacterised conserved protein UCP030820; hypothetical protein 3744648 5191523 Pput_3325 Pseudomonas putida F1 hypothetical protein YP_001268635.1 3744154 D 351746 CDS YP_001268636.1 148548534 5191524 complement(3744695..3748882) 1 NC_009512.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein 3748882 5191524 Pput_3326 Pseudomonas putida F1 hypothetical protein YP_001268636.1 3744695 R 351746 CDS YP_001268637.1 148548535 5193376 3749086..3749889 1 NC_009512.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 3749889 dkgB 5193376 dkgB Pseudomonas putida F1 2,5-diketo-D-gluconate reductase B YP_001268637.1 3749086 D 351746 CDS YP_001268638.1 148548536 5193377 3749895..3751082 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3751082 5193377 Pput_3328 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268638.1 3749895 D 351746 CDS YP_001268639.1 148548537 5194761 3751245..3752477 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3752477 5194761 Pput_3329 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268639.1 3751245 D 351746 CDS YP_001268640.1 148548538 5194762 3752514..3753287 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3753287 5194762 Pput_3330 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268640.1 3752514 D 351746 CDS YP_001268641.1 148548539 5195233 3753429..3754577 1 NC_009512.1 PFAM: peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 3754577 5195233 Pput_3331 Pseudomonas putida F1 peptidase M14, carboxypeptidase A YP_001268641.1 3753429 D 351746 CDS YP_001268642.1 148548540 5195234 complement(3754654..3755625) 1 NC_009512.1 PFAM: Spore coat U domain protein; spore coat U domain-containing protein 3755625 5195234 Pput_3332 Pseudomonas putida F1 spore coat U domain-containing protein YP_001268642.1 3754654 R 351746 CDS YP_001268643.1 148548541 5195000 complement(3755622..3758015) 1 NC_009512.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 3758015 5195000 Pput_3333 Pseudomonas putida F1 fimbrial biogenesis outer membrane usher protein YP_001268643.1 3755622 R 351746 CDS YP_001268644.1 148548542 5195001 complement(3758028..3758804) 1 NC_009512.1 type 1 pili usher pathway chaperone CsuC 3758804 5195001 Pput_3334 Pseudomonas putida F1 type 1 pili usher pathway chaperone CsuC YP_001268644.1 3758028 R 351746 CDS YP_001268645.1 148548543 5190507 complement(3758845..3759348) 1 NC_009512.1 PFAM: Spore coat U domain protein; spore coat U domain-containing protein 3759348 5190507 Pput_3335 Pseudomonas putida F1 spore coat U domain-containing protein YP_001268645.1 3758845 R 351746 CDS YP_001268646.1 148548544 5190508 complement(3759352..3759885) 1 NC_009512.1 PFAM: Spore coat U domain protein; spore coat U domain-containing protein 3759885 5190508 Pput_3336 Pseudomonas putida F1 spore coat U domain-containing protein YP_001268646.1 3759352 R 351746 CDS YP_001268647.1 148548545 5191072 complement(3759904..3760440) 1 NC_009512.1 PFAM: Spore coat U domain protein; spore coat U domain-containing protein 3760440 5191072 Pput_3337 Pseudomonas putida F1 spore coat U domain-containing protein YP_001268647.1 3759904 R 351746 CDS YP_001268648.1 148548546 5191073 complement(3760471..3761064) 1 NC_009512.1 PFAM: Spore coat U domain protein; spore coat U domain-containing protein 3761064 5191073 Pput_3338 Pseudomonas putida F1 spore coat U domain-containing protein YP_001268648.1 3760471 R 351746 CDS YP_001268649.1 148548547 5195332 3761266..3763512 1 NC_009512.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; multi-sensor signal transduction histidine kinase 3763512 5195332 Pput_3339 Pseudomonas putida F1 multi-sensor signal transduction histidine kinase YP_001268649.1 3761266 D 351746 CDS YP_001268650.1 148548548 5195333 3763528..3763989 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 3763989 5195333 Pput_3340 Pseudomonas putida F1 response regulator receiver protein YP_001268650.1 3763528 D 351746 CDS YP_001268651.1 148548549 5190588 3764003..3766390 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3766390 5190588 Pput_3341 Pseudomonas putida F1 multi-sensor hybrid histidine kinase YP_001268651.1 3764003 D 351746 CDS YP_001268652.1 148548550 5193935 3766848..3767090 1 NC_009512.1 hypothetical protein 3767090 5193935 Pput_3342 Pseudomonas putida F1 hypothetical protein YP_001268652.1 3766848 D 351746 CDS YP_001268653.1 148548551 5191890 3767223..3768296 1 NC_009512.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 3768296 5191890 Pput_3343 Pseudomonas putida F1 AFG1 family ATPase YP_001268653.1 3767223 D 351746 CDS YP_001268654.1 148548552 5191891 3768400..3769626 1 NC_009512.1 hypothetical protein 3769626 5191891 Pput_3344 Pseudomonas putida F1 hypothetical protein YP_001268654.1 3768400 D 351746 CDS YP_001268655.1 148548553 5194181 complement(3769715..3771604) 1 NC_009512.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3771604 5194181 Pput_3345 Pseudomonas putida F1 AMP-dependent synthetase and ligase YP_001268655.1 3769715 R 351746 CDS YP_001268656.1 148548554 5194182 3771785..3772651 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3772651 5194182 Pput_3346 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268656.1 3771785 D 351746 CDS YP_001268657.1 148548555 5195386 complement(3772625..3773779) 1 NC_009512.1 PFAM: CBS domain containing protein; HPP family protein+B94; hypothetical protein 3773779 5195386 Pput_3347 Pseudomonas putida F1 hypothetical protein YP_001268657.1 3772625 R 351746 CDS YP_001268658.1 148548556 5195387 complement(3774099..3775418) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3775418 5195387 Pput_3348 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268658.1 3774099 R 351746 CDS YP_001268659.1 148548557 5193071 complement(3775415..3776083) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3776083 5193071 Pput_3349 Pseudomonas putida F1 two component transcriptional regulator YP_001268659.1 3775415 R 351746 CDS YP_001268660.1 148548558 5193072 complement(3776084..3776398) 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 3776398 5193072 Pput_3350 Pseudomonas putida F1 peptidase YP_001268660.1 3776084 R 351746 CDS YP_001268661.1 148548559 5194217 complement(3776398..3776706) 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 3776706 5194217 Pput_3351 Pseudomonas putida F1 peptidase YP_001268661.1 3776398 R 351746 CDS YP_001268662.1 148548560 5194218 3776848..3778005 1 NC_009512.1 hypothetical protein 3778005 5194218 Pput_3352 Pseudomonas putida F1 hypothetical protein YP_001268662.1 3776848 D 351746 CDS YP_001268663.1 148548561 5195380 3778241..3779422 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 3779422 5195380 Pput_3353 Pseudomonas putida F1 phage integrase family protein YP_001268663.1 3778241 D 351746 CDS YP_001268664.1 148548562 5195381 complement(3779408..3779701) 1 NC_009512.1 hypothetical protein 3779701 5195381 Pput_3354 Pseudomonas putida F1 hypothetical protein YP_001268664.1 3779408 R 351746 CDS YP_001268665.1 148548563 5195088 complement(3779698..3779991) 1 NC_009512.1 hypothetical protein 3779991 5195088 Pput_3355 Pseudomonas putida F1 hypothetical protein YP_001268665.1 3779698 R 351746 CDS YP_001268666.1 148548564 5195089 complement(3780065..3780289) 1 NC_009512.1 hypothetical protein 3780289 5195089 Pput_3356 Pseudomonas putida F1 hypothetical protein YP_001268666.1 3780065 R 351746 CDS YP_001268667.1 148548565 5191480 3780536..3781120 1 NC_009512.1 hypothetical protein 3781120 5191480 Pput_3357 Pseudomonas putida F1 hypothetical protein YP_001268667.1 3780536 D 351746 CDS YP_001268668.1 148548566 5191481 3781173..3782039 1 NC_009512.1 hypothetical protein 3782039 5191481 Pput_3358 Pseudomonas putida F1 hypothetical protein YP_001268668.1 3781173 D 351746 CDS YP_001268669.1 148548567 5194616 complement(3782378..3782878) 1 NC_009512.1 hypothetical protein 3782878 5194616 Pput_3359 Pseudomonas putida F1 hypothetical protein YP_001268669.1 3782378 R 351746 CDS YP_001268670.1 148548568 5194617 complement(3782875..3783324) 1 NC_009512.1 hypothetical protein 3783324 5194617 Pput_3360 Pseudomonas putida F1 hypothetical protein YP_001268670.1 3782875 R 351746 CDS YP_001268671.1 148548569 5194275 complement(3783421..3784230) 1 NC_009512.1 hypothetical protein 3784230 5194275 Pput_3361 Pseudomonas putida F1 hypothetical protein YP_001268671.1 3783421 R 351746 CDS YP_001268672.1 148548570 5194276 complement(3784255..3786192) 1 NC_009512.1 hypothetical protein 3786192 5194276 Pput_3362 Pseudomonas putida F1 hypothetical protein YP_001268672.1 3784255 R 351746 CDS YP_001268673.1 148548571 5192885 complement(3786248..3789301) 1 NC_009512.1 hypothetical protein 3789301 5192885 Pput_3363 Pseudomonas putida F1 hypothetical protein YP_001268673.1 3786248 R 351746 CDS YP_001268674.1 148548572 5192886 complement(3789298..3789675) 1 NC_009512.1 hypothetical protein 3789675 5192886 Pput_3364 Pseudomonas putida F1 hypothetical protein YP_001268674.1 3789298 R 351746 CDS YP_001268675.1 148548573 5195309 complement(3789678..3790157) 1 NC_009512.1 PFAM: Domain of unknown function DUF1833; hypothetical protein 3790157 5195309 Pput_3365 Pseudomonas putida F1 hypothetical protein YP_001268675.1 3789678 R 351746 CDS YP_001268676.1 148548574 5195310 complement(3790154..3790624) 1 NC_009512.1 hypothetical protein 3790624 5195310 Pput_3366 Pseudomonas putida F1 hypothetical protein YP_001268676.1 3790154 R 351746 CDS YP_001268677.1 148548575 5194720 complement(3790812..3793724) 1 NC_009512.1 PFAM: Prophage tail length tape measure; prophage tail length tape measure 3793724 5194720 Pput_3367 Pseudomonas putida F1 prophage tail length tape measure YP_001268677.1 3790812 R 351746 CDS YP_001268678.1 148548576 5194721 complement(3793780..3794199) 1 NC_009512.1 hypothetical protein 3794199 5194721 Pput_3368 Pseudomonas putida F1 hypothetical protein YP_001268678.1 3793780 R 351746 CDS YP_001268679.1 148548577 5191342 complement(3794627..3795112) 1 NC_009512.1 hypothetical protein 3795112 5191342 Pput_3369 Pseudomonas putida F1 hypothetical protein YP_001268679.1 3794627 R 351746 CDS YP_001268680.1 148548578 5191343 complement(3795170..3796339) 1 NC_009512.1 PFAM: Ig domain protein, group 2 domain protein; Ig domain-containing protein 3796339 5191343 Pput_3370 Pseudomonas putida F1 Ig domain-containing protein YP_001268680.1 3795170 R 351746 CDS YP_001268681.1 148548579 5194430 complement(3796399..3796806) 1 NC_009512.1 hypothetical protein 3796806 5194430 Pput_3371 Pseudomonas putida F1 hypothetical protein YP_001268681.1 3796399 R 351746 CDS YP_001268682.1 148548580 5194431 complement(3796803..3797189) 1 NC_009512.1 hypothetical protein 3797189 5194431 Pput_3372 Pseudomonas putida F1 hypothetical protein YP_001268682.1 3796803 R 351746 CDS YP_001268683.1 148548581 5194025 complement(3797192..3797572) 1 NC_009512.1 hypothetical protein 3797572 5194025 Pput_3373 Pseudomonas putida F1 hypothetical protein YP_001268683.1 3797192 R 351746 CDS YP_001268684.1 148548582 5194026 complement(3797576..3797968) 1 NC_009512.1 hypothetical protein 3797968 5194026 Pput_3374 Pseudomonas putida F1 hypothetical protein YP_001268684.1 3797576 R 351746 CDS YP_001268685.1 148548583 5194343 complement(3798008..3798640) 1 NC_009512.1 hypothetical protein 3798640 5194343 Pput_3375 Pseudomonas putida F1 hypothetical protein YP_001268685.1 3798008 R 351746 CDS YP_001268686.1 148548584 5194344 complement(3798645..3799613) 1 NC_009512.1 hypothetical protein 3799613 5194344 Pput_3376 Pseudomonas putida F1 hypothetical protein YP_001268686.1 3798645 R 351746 CDS YP_001268687.1 148548585 5190954 complement(3799626..3800336) 1 NC_009512.1 hypothetical protein 3800336 5190954 Pput_3377 Pseudomonas putida F1 hypothetical protein YP_001268687.1 3799626 R 351746 CDS YP_001268688.1 148548586 5190955 complement(3800454..3801500) 1 NC_009512.1 TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; SPP1 family phage head morphogenesis protein 3801500 5190955 Pput_3378 Pseudomonas putida F1 SPP1 family phage head morphogenesis protein YP_001268688.1 3800454 R 351746 CDS YP_001268689.1 148548587 5192339 complement(3801490..3802914) 1 NC_009512.1 hypothetical protein 3802914 5192339 Pput_3379 Pseudomonas putida F1 hypothetical protein YP_001268689.1 3801490 R 351746 CDS YP_001268690.1 148548588 5192340 complement(3802923..3804224) 1 NC_009512.1 PFAM: protein of unknown function DUF264; hypothetical protein 3804224 5192340 Pput_3380 Pseudomonas putida F1 hypothetical protein YP_001268690.1 3802923 R 351746 CDS YP_001268691.1 148548589 5192096 complement(3804211..3804672) 1 NC_009512.1 hypothetical protein 3804672 5192096 Pput_3381 Pseudomonas putida F1 hypothetical protein YP_001268691.1 3804211 R 351746 CDS YP_001268692.1 148548590 5192097 complement(3804704..3805312) 1 NC_009512.1 hypothetical protein 3805312 5192097 Pput_3382 Pseudomonas putida F1 hypothetical protein YP_001268692.1 3804704 R 351746 CDS YP_001268693.1 148548591 5190439 complement(3805620..3806057) 1 NC_009512.1 hypothetical protein 3806057 5190439 Pput_3383 Pseudomonas putida F1 hypothetical protein YP_001268693.1 3805620 R 351746 CDS YP_001268694.1 148548592 5190440 complement(3806054..3806350) 1 NC_009512.1 hypothetical protein 3806350 5190440 Pput_3384 Pseudomonas putida F1 hypothetical protein YP_001268694.1 3806054 R 351746 CDS YP_001268695.1 148548593 5194915 3806503..3806739 1 NC_009512.1 hypothetical protein 3806739 5194915 Pput_3385 Pseudomonas putida F1 hypothetical protein YP_001268695.1 3806503 D 351746 CDS YP_001268696.1 148548594 5194916 complement(3806746..3807015) 1 NC_009512.1 hypothetical protein 3807015 5194916 Pput_3386 Pseudomonas putida F1 hypothetical protein YP_001268696.1 3806746 R 351746 CDS YP_001268697.1 148548595 5191185 complement(3807015..3807326) 1 NC_009512.1 hypothetical protein 3807326 5191185 Pput_3387 Pseudomonas putida F1 hypothetical protein YP_001268697.1 3807015 R 351746 CDS YP_001268698.1 148548596 5191186 complement(3807736..3808281) 1 NC_009512.1 hypothetical protein 3808281 5191186 Pput_3388 Pseudomonas putida F1 hypothetical protein YP_001268698.1 3807736 R 351746 CDS YP_001268699.1 148548597 5190493 complement(3808421..3809023) 1 NC_009512.1 PFAM: bacteriophage Lambda NinG family protein; bacteriophage lambda NinG family protein 3809023 5190493 Pput_3389 Pseudomonas putida F1 bacteriophage lambda NinG family protein YP_001268699.1 3808421 R 351746 CDS YP_001268700.1 148548598 5190494 complement(3809023..3809421) 1 NC_009512.1 PFAM: NinB family protein; NinB family protein 3809421 5190494 Pput_3390 Pseudomonas putida F1 NinB family protein YP_001268700.1 3809023 R 351746 CDS YP_001268701.1 148548599 5191653 complement(3809612..3809890) 1 NC_009512.1 hypothetical protein 3809890 5191653 Pput_3391 Pseudomonas putida F1 hypothetical protein YP_001268701.1 3809612 R 351746 CDS YP_001268702.1 148548600 5191654 complement(3809890..3810285) 1 NC_009512.1 hypothetical protein 3810285 5191654 Pput_3392 Pseudomonas putida F1 hypothetical protein YP_001268702.1 3809890 R 351746 CDS YP_001268703.1 148548601 5191868 complement(3810285..3811046) 1 NC_009512.1 hypothetical protein 3811046 5191868 Pput_3393 Pseudomonas putida F1 hypothetical protein YP_001268703.1 3810285 R 351746 CDS YP_001268704.1 148548602 5191869 complement(3811043..3811819) 1 NC_009512.1 hypothetical protein 3811819 5191869 Pput_3394 Pseudomonas putida F1 hypothetical protein YP_001268704.1 3811043 R 351746 CDS YP_001268705.1 148548603 5191024 complement(3811816..3812565) 1 NC_009512.1 phage-encoded protein 3812565 5191024 Pput_3395 Pseudomonas putida F1 phage-encoded protein YP_001268705.1 3811816 R 351746 CDS YP_001268706.1 148548604 5191025 complement(3812899..3813090) 1 NC_009512.1 hypothetical protein 3813090 5191025 Pput_3396 Pseudomonas putida F1 hypothetical protein YP_001268706.1 3812899 R 351746 CDS YP_001268707.1 148548605 5193659 complement(3813118..3813366) 1 NC_009512.1 hypothetical protein 3813366 5193659 Pput_3397 Pseudomonas putida F1 hypothetical protein YP_001268707.1 3813118 R 351746 CDS YP_001268708.1 148548606 5193660 3813463..3814305 1 NC_009512.1 PFAM: peptidase S24, S26A and S26B; putative phage repressor 3814305 5193660 Pput_3398 Pseudomonas putida F1 putative phage repressor YP_001268708.1 3813463 D 351746 CDS YP_001268709.1 148548607 5194395 3814577..3815152 1 NC_009512.1 hypothetical protein 3815152 5194395 Pput_3399 Pseudomonas putida F1 hypothetical protein YP_001268709.1 3814577 D 351746 CDS YP_001268710.1 148548608 5194396 3815143..3815547 1 NC_009512.1 hypothetical protein 3815547 5194396 Pput_3400 Pseudomonas putida F1 hypothetical protein YP_001268710.1 3815143 D 351746 CDS YP_001268711.1 148548609 5191123 complement(3815588..3815914) 1 NC_009512.1 PFAM: protein of unknown function DUF1654; hypothetical protein 3815914 5191123 Pput_3401 Pseudomonas putida F1 hypothetical protein YP_001268711.1 3815588 R 351746 CDS YP_001268712.1 148548610 5191124 3816426..3816614 1 NC_009512.1 hypothetical protein 3816614 5191124 Pput_3402 Pseudomonas putida F1 hypothetical protein YP_001268712.1 3816426 D 351746 CDS YP_001268713.1 148548611 5194554 3816611..3816865 1 NC_009512.1 hypothetical protein 3816865 5194554 Pput_3403 Pseudomonas putida F1 hypothetical protein YP_001268713.1 3816611 D 351746 CDS YP_001268714.1 148548612 5194555 3817241..3817519 1 NC_009512.1 hypothetical protein 3817519 5194555 Pput_3404 Pseudomonas putida F1 hypothetical protein YP_001268714.1 3817241 D 351746 CDS YP_001268715.1 148548613 5191430 3817516..3817758 1 NC_009512.1 PFAM: protein of unknown function DUF551; hypothetical protein 3817758 5191430 Pput_3405 Pseudomonas putida F1 hypothetical protein YP_001268715.1 3817516 D 351746 CDS YP_001268716.1 148548614 5191431 3817779..3818213 1 NC_009512.1 hypothetical protein 3818213 5191431 Pput_3406 Pseudomonas putida F1 hypothetical protein YP_001268716.1 3817779 D 351746 CDS YP_001268717.1 148548615 5193893 3818235..3818651 1 NC_009512.1 hypothetical protein 3818651 5193893 Pput_3407 Pseudomonas putida F1 hypothetical protein YP_001268717.1 3818235 D 351746 CDS YP_001268718.1 148548616 5193894 3818648..3818851 1 NC_009512.1 hypothetical protein 3818851 5193894 Pput_3408 Pseudomonas putida F1 hypothetical protein YP_001268718.1 3818648 D 351746 CDS YP_001268719.1 148548617 5191785 3818848..3819069 1 NC_009512.1 hypothetical protein 3819069 5191785 Pput_3409 Pseudomonas putida F1 hypothetical protein YP_001268719.1 3818848 D 351746 CDS YP_001268720.1 148548618 5191786 3819358..3820089 1 NC_009512.1 hypothetical protein 3820089 5191786 Pput_3410 Pseudomonas putida F1 hypothetical protein YP_001268720.1 3819358 D 351746 CDS YP_001268721.1 148548619 5193338 3820086..3820649 1 NC_009512.1 PFAM: siphovirus Gp157 family protein; siphovirus Gp157 family protein 3820649 5193338 Pput_3411 Pseudomonas putida F1 siphovirus Gp157 family protein YP_001268721.1 3820086 D 351746 CDS YP_001268722.1 148548620 5193339 3820657..3821169 1 NC_009512.1 hypothetical protein 3821169 5193339 Pput_3412 Pseudomonas putida F1 hypothetical protein YP_001268722.1 3820657 D 351746 CDS YP_001268723.1 148548621 5193408 3821419..3821940 1 NC_009512.1 hypothetical protein 3821940 5193408 Pput_3413 Pseudomonas putida F1 hypothetical protein YP_001268723.1 3821419 D 351746 CDS YP_001268724.1 148548622 5193409 complement(3821937..3822383) 1 NC_009512.1 hypothetical protein 3822383 5193409 Pput_3414 Pseudomonas putida F1 hypothetical protein YP_001268724.1 3821937 R 351746 CDS YP_001268725.1 148548623 5192432 3822485..3823042 1 NC_009512.1 hypothetical protein 3823042 5192432 Pput_3415 Pseudomonas putida F1 hypothetical protein YP_001268725.1 3822485 D 351746 CDS YP_001268726.1 148548624 5192433 complement(3823066..3823287) 1 NC_009512.1 hypothetical protein 3823287 5192433 Pput_3416 Pseudomonas putida F1 hypothetical protein YP_001268726.1 3823066 R 351746 CDS YP_001268727.1 148548625 5194148 complement(3823451..3823726) 1 NC_009512.1 hypothetical protein 3823726 5194148 Pput_3417 Pseudomonas putida F1 hypothetical protein YP_001268727.1 3823451 R 351746 CDS YP_001268728.1 148548626 5194149 3823762..3824145 1 NC_009512.1 hypothetical protein 3824145 5194149 Pput_3418 Pseudomonas putida F1 hypothetical protein YP_001268728.1 3823762 D 351746 CDS YP_001268729.1 148548627 5195321 3824652..3825071 1 NC_009512.1 hypothetical protein 3825071 5195321 Pput_3419 Pseudomonas putida F1 hypothetical protein YP_001268729.1 3824652 D 351746 CDS YP_001268730.1 148548628 5195322 complement(3825134..3825436) 1 NC_009512.1 hypothetical protein 3825436 5195322 Pput_3420 Pseudomonas putida F1 hypothetical protein YP_001268730.1 3825134 R 351746 CDS YP_001268731.1 148548629 5192159 3825608..3826402 1 NC_009512.1 hypothetical protein 3826402 5192159 Pput_3421 Pseudomonas putida F1 hypothetical protein YP_001268731.1 3825608 D 351746 CDS YP_001268732.1 148548630 5192160 3826399..3826668 1 NC_009512.1 hypothetical protein 3826668 5192160 Pput_3422 Pseudomonas putida F1 hypothetical protein YP_001268732.1 3826399 D 351746 CDS YP_001268733.1 148548631 5190921 3826665..3826988 1 NC_009512.1 hypothetical protein 3826988 5190921 Pput_3423 Pseudomonas putida F1 hypothetical protein YP_001268733.1 3826665 D 351746 CDS YP_001268734.1 148548632 5190922 3826985..3827377 1 NC_009512.1 hypothetical protein 3827377 5190922 Pput_3424 Pseudomonas putida F1 hypothetical protein YP_001268734.1 3826985 D 351746 CDS YP_001268735.1 148548633 5193996 3827374..3827724 1 NC_009512.1 hypothetical protein 3827724 5193996 Pput_3425 Pseudomonas putida F1 hypothetical protein YP_001268735.1 3827374 D 351746 CDS YP_001268736.1 148548634 5193997 3827956..3828435 1 NC_009512.1 hypothetical protein 3828435 5193997 Pput_3426 Pseudomonas putida F1 hypothetical protein YP_001268736.1 3827956 D 351746 CDS YP_001268737.1 148548635 5193210 3828540..3828752 1 NC_009512.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3828752 5193210 Pput_3427 Pseudomonas putida F1 phage transcriptional regulator AlpA YP_001268737.1 3828540 D 351746 CDS YP_001268738.1 148548636 5193211 3828816..3829172 1 NC_009512.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 3829172 5193211 Pput_3428 Pseudomonas putida F1 putative 6-pyruvoyl tetrahydropterin synthase YP_001268738.1 3828816 D 351746 CDS YP_001268739.1 148548637 5191907 complement(3829199..3829960) 1 NC_009512.1 hypothetical protein 3829960 5191907 Pput_3429 Pseudomonas putida F1 hypothetical protein YP_001268739.1 3829199 R 351746 CDS YP_001268740.1 148548638 5191908 complement(3830028..3830495) 1 NC_009512.1 PFAM: protein of unknown function DUF1289; hypothetical protein 3830495 5191908 Pput_3430 Pseudomonas putida F1 hypothetical protein YP_001268740.1 3830028 R 351746 CDS YP_001268741.2 161936356 5192188 3830901..3833510 1 NC_009512.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3833510 5192188 Pput_3431 Pseudomonas putida F1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001268741.2 3830901 D 351746 CDS YP_001268742.1 148548640 5192189 complement(3833686..3835170) 1 NC_009512.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 3835170 prpD 5192189 prpD Pseudomonas putida F1 2-methylcitrate dehydratase YP_001268742.1 3833686 R 351746 CDS YP_001268743.1 148548641 5194970 complement(3835342..3836532) 1 NC_009512.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; putative AcnD-accessory protein PrpF 3836532 5194970 Pput_3433 Pseudomonas putida F1 putative AcnD-accessory protein PrpF YP_001268743.1 3835342 R 351746 CDS YP_001268744.1 148548642 5194971 complement(3836684..3839275) 1 NC_009512.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3839275 5194971 Pput_3434 Pseudomonas putida F1 aconitate hydratase YP_001268744.1 3836684 R 351746 CDS YP_001268745.1 148548643 5193540 complement(3839434..3840561) 1 NC_009512.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3840561 5193540 Pput_3435 Pseudomonas putida F1 methylcitrate synthase YP_001268745.1 3839434 R 351746 CDS YP_001268746.1 148548644 5193541 complement(3840622..3841512) 1 NC_009512.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3841512 prpB 5193541 prpB Pseudomonas putida F1 2-methylisocitrate lyase YP_001268746.1 3840622 R 351746 CDS YP_001268747.1 148548645 5190483 complement(3841509..3842225) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3842225 5190483 Pput_3437 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268747.1 3841509 R 351746 CDS YP_001268748.1 148548646 5190484 3842514..3843068 1 NC_009512.1 PFAM: protein of unknown function DUF785; hypothetical protein 3843068 5190484 Pput_3438 Pseudomonas putida F1 hypothetical protein YP_001268748.1 3842514 D 351746 CDS YP_001268749.1 148548647 5190250 3843074..3844609 1 NC_009512.1 hypothetical protein 3844609 5190250 Pput_3439 Pseudomonas putida F1 hypothetical protein YP_001268749.1 3843074 D 351746 CDS YP_001268750.1 148548648 5190251 3844609..3845589 1 NC_009512.1 TIGRFAM: alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein 3845589 5190251 Pput_3440 Pseudomonas putida F1 alpha-L-glutamate ligase-like protein YP_001268750.1 3844609 D 351746 CDS YP_001268751.1 148548649 5192118 3845798..3847138 1 NC_009512.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; para-aminobenzoate synthase subunit I 3847138 5192118 Pput_3441 Pseudomonas putida F1 para-aminobenzoate synthase subunit I YP_001268751.1 3845798 D 351746 CDS YP_001268752.1 148548650 5192119 3847219..3847953 1 NC_009512.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3847953 5192119 Pput_3442 Pseudomonas putida F1 phosphoadenosine phosphosulfate reductase YP_001268752.1 3847219 D 351746 CDS YP_001268753.1 148548651 5193637 complement(3848123..3849097) 1 NC_009512.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 3849097 cysB 5193637 cysB Pseudomonas putida F1 transcriptional regulator CysB YP_001268753.1 3848123 R 351746 CDS YP_001268754.1 148548652 5193638 complement(3849226..3849723) 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 3849723 5193638 Pput_3444 Pseudomonas putida F1 UspA domain-containing protein YP_001268754.1 3849226 R 351746 CDS YP_001268755.1 148548653 5193866 complement(3849848..3850897) 1 NC_009512.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 3850897 5193866 Pput_3445 Pseudomonas putida F1 2-dehydropantoate 2-reductase YP_001268755.1 3849848 R 351746 CDS YP_001268756.1 148548654 5193867 3851028..3852104 1 NC_009512.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3852104 5193867 Pput_3446 Pseudomonas putida F1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001268756.1 3851028 D 351746 CDS YP_001268757.1 148548655 5192064 complement(3852175..3852456) 1 NC_009512.1 hypothetical protein 3852456 5192064 Pput_3447 Pseudomonas putida F1 hypothetical protein YP_001268757.1 3852175 R 351746 CDS YP_001268758.1 148548656 5192065 3852964..3853215 1 NC_009512.1 outer membrane lipoprotein OprI 3853215 5192065 Pput_3448 Pseudomonas putida F1 outer membrane lipoprotein OprI YP_001268758.1 3852964 D 351746 CDS YP_001268759.1 148548657 5191866 complement(3853348..3854325) 1 NC_009512.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3854325 5191866 Pput_3449 Pseudomonas putida F1 ErfK/YbiS/YcfS/YnhG family protein YP_001268759.1 3853348 R 351746 CDS YP_001268760.1 148548658 5191867 complement(3854439..3854759) 1 NC_009512.1 hypothetical protein 3854759 5191867 Pput_3450 Pseudomonas putida F1 hypothetical protein YP_001268760.1 3854439 R 351746 CDS YP_001268761.1 148548659 5194917 complement(3854788..3855393) 1 NC_009512.1 PFAM: lipolytic enzyme, G-D-S-L family; arylesterase 3855393 5194917 Pput_3451 Pseudomonas putida F1 arylesterase YP_001268761.1 3854788 R 351746 CDS YP_001268762.1 148548660 5194918 3855404..3856090 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3856090 5194918 Pput_3452 Pseudomonas putida F1 ABC transporter-like protein YP_001268762.1 3855404 D 351746 CDS YP_001268763.1 148548661 5194612 3856096..3858594 1 NC_009512.1 PFAM: protein of unknown function DUF214; hypothetical protein 3858594 5194612 Pput_3453 Pseudomonas putida F1 hypothetical protein YP_001268763.1 3856096 D 351746 CDS YP_001268764.1 148548662 5194613 complement(3858658..3859146) 1 NC_009512.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3859146 greB 5194613 greB Pseudomonas putida F1 transcription elongation factor GreB YP_001268764.1 3858658 R 351746 CDS YP_001268765.1 148548663 5194211 complement(3859158..3859466) 1 NC_009512.1 hypothetical protein 3859466 5194211 Pput_3455 Pseudomonas putida F1 hypothetical protein YP_001268765.1 3859158 R 351746 CDS YP_001268766.1 148548664 5194212 complement(3859715..3860152) 1 NC_009512.1 PFAM: DoxX family protein; DoxX family protein 3860152 5194212 Pput_3456 Pseudomonas putida F1 DoxX family protein YP_001268766.1 3859715 R 351746 CDS YP_001268767.1 148548665 5192984 complement(3860264..3861706) 1 NC_009512.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 3861706 5192984 Pput_3457 Pseudomonas putida F1 lytic transglycosylase subunit YP_001268767.1 3860264 R 351746 CDS YP_001268768.1 148548666 5192985 3861756..3862625 1 NC_009512.1 PFAM: TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 3862625 5192985 Pput_3458 Pseudomonas putida F1 TatD-related deoxyribonuclease YP_001268768.1 3861756 D 351746 CDS YP_001268769.1 148548667 5193222 3862753..3864231 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3864231 5193222 Pput_3459 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268769.1 3862753 D 351746 CDS YP_001268770.1 148548668 5193223 3864307..3864675 1 NC_009512.1 hypothetical protein 3864675 5193223 Pput_3460 Pseudomonas putida F1 hypothetical protein YP_001268770.1 3864307 D 351746 CDS YP_001268771.1 148548669 5194650 complement(3864717..3865514) 1 NC_009512.1 Acyl-CoA thioesterase-like protein 3865514 5194650 Pput_3461 Pseudomonas putida F1 Acyl-CoA thioesterase-like protein YP_001268771.1 3864717 R 351746 CDS YP_001268772.1 148548670 5194651 complement(3865591..3866370) 1 NC_009512.1 PFAM: CHAD domain containing protein; CHAD domain-containing protein 3866370 5194651 Pput_3462 Pseudomonas putida F1 CHAD domain-containing protein YP_001268772.1 3865591 R 351746 CDS YP_001268773.1 148548671 5192133 complement(3866385..3866663) 1 NC_009512.1 hypothetical protein 3866663 5192133 Pput_3463 Pseudomonas putida F1 hypothetical protein YP_001268773.1 3866385 R 351746 CDS YP_001268774.1 148548672 5192134 3866841..3867881 1 NC_009512.1 PFAM: Patatin; patatin 3867881 5192134 Pput_3464 Pseudomonas putida F1 patatin YP_001268774.1 3866841 D 351746 CDS YP_001268775.1 148548673 5191576 complement(3867998..3869869) 1 NC_009512.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain; PpiC-type peptidyl-prolyl cis-trans isomerase 3869869 5191576 Pput_3465 Pseudomonas putida F1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001268775.1 3867998 R 351746 CDS YP_001268776.1 148548674 5191577 complement(3870051..3870323) 1 NC_009512.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 3870323 5191577 Pput_3466 Pseudomonas putida F1 histone family protein DNA-binding protein YP_001268776.1 3870051 R 351746 CDS YP_001268777.1 148548675 5190236 complement(3870476..3872872) 1 NC_009512.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 3872872 5190236 Pput_3467 Pseudomonas putida F1 ATP-dependent protease La YP_001268777.1 3870476 R 351746 CDS YP_001268778.1 148548676 5190237 complement(3873037..3874320) 1 NC_009512.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3874320 clpX 5190237 clpX Pseudomonas putida F1 ATP-dependent protease ATP-binding subunit ClpX YP_001268778.1 3873037 R 351746 CDS YP_001268779.1 148548677 5190397 complement(3874429..3875070) 1 NC_009512.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3875070 clpP 5190397 clpP Pseudomonas putida F1 ATP-dependent Clp protease proteolytic subunit YP_001268779.1 3874429 R 351746 CDS YP_001268780.1 148548678 5190398 complement(3875162..3876475) 1 NC_009512.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3876475 tig 5190398 tig Pseudomonas putida F1 trigger factor YP_001268780.1 3875162 R 351746 CDS YP_001268781.1 148548679 5190184 complement(3876725..3877024) 1 NC_009512.1 hypothetical protein 3877024 5190184 Pput_3471 Pseudomonas putida F1 hypothetical protein YP_001268781.1 3876725 R 351746 CDS YP_001268782.1 148548680 5194165 3877880..3878779 1 NC_009512.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3878779 5194165 Pput_3472 Pseudomonas putida F1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001268782.1 3877880 D 351746 CDS YP_001268783.1 148548681 5193649 complement(3878922..3880661) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 3880661 5193649 Pput_3473 Pseudomonas putida F1 extracellular solute-binding protein YP_001268783.1 3878922 R 351746 CDS YP_001268784.1 148548682 5193650 complement(3880701..3880973) 1 NC_009512.1 hypothetical protein 3880973 5193650 Pput_3474 Pseudomonas putida F1 hypothetical protein YP_001268784.1 3880701 R 351746 CDS YP_001268785.1 148548683 5192426 complement(3880986..3881786) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3881786 5192426 Pput_3475 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001268785.1 3880986 R 351746 CDS YP_001268786.1 148548684 5192427 complement(3881790..3882656) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3882656 5192427 Pput_3476 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001268786.1 3881790 R 351746 CDS YP_001268787.1 148548685 5194588 complement(3882653..3883750) 1 NC_009512.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 3883750 5194588 Pput_3477 Pseudomonas putida F1 ABC transporter-like protein YP_001268787.1 3882653 R 351746 CDS YP_001268788.1 148548686 5194589 complement(3883750..3884844) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3884844 5194589 Pput_3478 Pseudomonas putida F1 ABC transporter-like protein YP_001268788.1 3883750 R 351746 CDS YP_001268789.1 148548687 5195035 3885068..3886816 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 3886816 5195035 Pput_3479 Pseudomonas putida F1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001268789.1 3885068 D 351746 CDS YP_001268790.1 148548688 5195036 complement(3886922..3888610) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 3888610 5195036 Pput_3480 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001268790.1 3886922 R 351746 CDS YP_001268791.1 148548689 5194768 complement(3888624..3890189) 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; methyl-accepting chemotaxis sensory transducer 3890189 5194768 Pput_3481 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268791.1 3888624 R 351746 CDS YP_001268792.1 148548690 5194769 3890456..3890770 1 NC_009512.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 3890770 5194769 Pput_3482 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268792.1 3890456 D 351746 CDS YP_001268793.1 148548691 5192373 3890998..3892308 1 NC_009512.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3892308 5192373 Pput_3483 Pseudomonas putida F1 C4-dicarboxylate transporter DctA YP_001268793.1 3890998 D 351746 CDS YP_001268794.1 148548692 5192374 3892353..3893051 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3893051 5192374 Pput_3484 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268794.1 3892353 D 351746 CDS YP_001268795.1 148548693 5191775 3893068..3893736 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3893736 5191775 Pput_3485 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268795.1 3893068 D 351746 CDS YP_001268796.1 148548694 5191776 3893889..3894938 1 NC_009512.1 hypothetical protein 3894938 5191776 Pput_3486 Pseudomonas putida F1 hypothetical protein YP_001268796.1 3893889 D 351746 CDS YP_001268797.1 148548695 5191634 complement(3894978..3895406) 1 NC_009512.1 PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 3895406 5191634 Pput_3487 Pseudomonas putida F1 transmembrane pair domain-containing protein YP_001268797.1 3894978 R 351746 CDS YP_001268798.1 148548696 5191635 3895507..3896385 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3896385 5191635 Pput_3488 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268798.1 3895507 D 351746 CDS YP_001268799.1 148548697 5193224 3896528..3898414 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3898414 5193224 Pput_3489 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268799.1 3896528 D 351746 CDS YP_001268800.1 148548698 5193225 complement(3898468..3899532) 1 NC_009512.1 hypothetical protein 3899532 5193225 Pput_3490 Pseudomonas putida F1 hypothetical protein YP_001268800.1 3898468 R 351746 CDS YP_001268801.1 148548699 5191924 complement(3899645..3900022) 1 NC_009512.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 3900022 5191924 Pput_3491 Pseudomonas putida F1 endoribonuclease L-PSP YP_001268801.1 3899645 R 351746 CDS YP_001268802.1 148548700 5191925 complement(3900035..3901171) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3901171 5191925 Pput_3492 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001268802.1 3900035 R 351746 CDS YP_001268803.1 148548701 5190694 3901287..3901880 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3901880 5190694 Pput_3493 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268803.1 3901287 D 351746 CDS YP_001268804.1 148548702 5190695 3902006..3902791 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 3902791 5190695 Pput_3494 Pseudomonas putida F1 hypothetical protein YP_001268804.1 3902006 D 351746 CDS YP_001268805.1 148548703 5194261 complement(3902795..3903400) 1 NC_009512.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3903400 5194261 Pput_3495 Pseudomonas putida F1 phosphoglycerate mutase YP_001268805.1 3902795 R 351746 CDS YP_001268806.1 148548704 5194262 complement(3903461..3905695) 1 NC_009512.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 3905695 5194262 Pput_3496 Pseudomonas putida F1 outer membrane receptor FepA YP_001268806.1 3903461 R 351746 CDS YP_001268807.1 148548705 5194190 3906136..3907335 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3907335 5194190 Pput_3497 Pseudomonas putida F1 major facilitator superfamily transporter YP_001268807.1 3906136 D 351746 CDS YP_001268808.1 148548706 5194191 complement(3907559..3909406) 1 NC_009512.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 3909406 5194191 Pput_3498 Pseudomonas putida F1 ABC transporter YP_001268808.1 3907559 R 351746 CDS YP_001268809.1 148548707 5194160 3915252..3916139 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3916139 5194160 Pput_3499 Pseudomonas putida F1 hypothetical protein YP_001268809.1 3915252 D 351746 CDS YP_001268810.1 148548708 5190347 complement(3916206..3916319) 1 NC_009512.1 hypothetical protein 3916319 5190347 Pput_3500 Pseudomonas putida F1 hypothetical protein YP_001268810.1 3916206 R 351746 CDS YP_001268811.1 148548709 5195469 3916332..3916613 1 NC_009512.1 hypothetical protein 3916613 5195469 Pput_3501 Pseudomonas putida F1 hypothetical protein YP_001268811.1 3916332 D 351746 CDS YP_001268812.1 148548710 5195470 complement(3916653..3918461) 1 NC_009512.1 PFAM: creatinase; peptidase M24; peptidase M24 3918461 5195470 Pput_3502 Pseudomonas putida F1 peptidase M24 YP_001268812.1 3916653 R 351746 CDS YP_001268813.1 148548711 5193956 3918682..3919800 1 NC_009512.1 hypothetical protein 3919800 5193956 Pput_3503 Pseudomonas putida F1 hypothetical protein YP_001268813.1 3918682 D 351746 CDS YP_001268814.1 148548712 5193957 3919784..3920554 1 NC_009512.1 hypothetical protein 3920554 5193957 Pput_3504 Pseudomonas putida F1 hypothetical protein YP_001268814.1 3919784 D 351746 CDS YP_001268815.1 148548713 5190810 complement(3920533..3920913) 1 NC_009512.1 hypothetical protein 3920913 5190810 Pput_3505 Pseudomonas putida F1 hypothetical protein YP_001268815.1 3920533 R 351746 CDS YP_001268816.1 148548714 5190811 complement(3920995..3921987) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 3921987 5190811 Pput_3506 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268816.1 3920995 R 351746 CDS YP_001268817.1 148548715 5190641 3922070..3922618 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3922618 5190641 Pput_3507 Pseudomonas putida F1 isochorismatase hydrolase YP_001268817.1 3922070 D 351746 CDS YP_001268818.1 148548716 5190642 complement(3922667..3923230) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3923230 5190642 Pput_3508 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268818.1 3922667 R 351746 CDS YP_001268819.1 148548717 5194085 3923315..3924265 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3924265 5194085 Pput_3509 Pseudomonas putida F1 hypothetical protein YP_001268819.1 3923315 D 351746 CDS YP_001268820.1 148548718 5194086 3924415..3927330 1 NC_009512.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 3927330 5194086 Pput_3510 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit A YP_001268820.1 3924415 D 351746 CDS YP_001268821.1 148548719 5194962 3927330..3927674 1 NC_009512.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 3927674 5194962 Pput_3511 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit C YP_001268821.1 3927330 D 351746 CDS YP_001268822.1 148548720 5194963 3927671..3929350 1 NC_009512.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 3929350 5194963 Pput_3512 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit D YP_001268822.1 3927671 D 351746 CDS YP_001268823.1 148548721 5191410 3929347..3929835 1 NC_009512.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 3929835 5191410 Pput_3513 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit E YP_001268823.1 3929347 D 351746 CDS YP_001268824.1 148548722 5191411 3929832..3930110 1 NC_009512.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 3930110 5191411 Pput_3514 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit F YP_001268824.1 3929832 D 351746 CDS YP_001268825.1 148548723 5195134 3930107..3930472 1 NC_009512.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3930472 5195134 Pput_3515 Pseudomonas putida F1 putative monovalent cation/H+ antiporter subunit G YP_001268825.1 3930107 D 351746 CDS YP_001268826.1 148548724 5195135 complement(3930485..3930697) 1 NC_009512.1 hypothetical protein 3930697 5195135 Pput_3516 Pseudomonas putida F1 hypothetical protein YP_001268826.1 3930485 R 351746 CDS YP_001268827.1 148548725 5194061 complement(3930694..3931179) 1 NC_009512.1 hypothetical protein 3931179 5194061 Pput_3517 Pseudomonas putida F1 hypothetical protein YP_001268827.1 3930694 R 351746 CDS YP_001268828.1 148548726 5194062 complement(3931511..3931705) 1 NC_009512.1 hypothetical protein 3931705 5194062 Pput_3518 Pseudomonas putida F1 hypothetical protein YP_001268828.1 3931511 R 351746 CDS YP_001268829.1 148548727 5192607 complement(3931883..3932347) 1 NC_009512.1 PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 3932347 5192607 Pput_3519 Pseudomonas putida F1 TraR/DksA family transcriptional regulator YP_001268829.1 3931883 R 351746 CDS YP_001268830.1 148548728 5192608 3933134..3934312 1 NC_009512.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 3934312 5192608 Pput_3520 Pseudomonas putida F1 integrase catalytic subunit YP_001268830.1 3933134 D 351746 CDS YP_001268831.1 148548729 5191037 complement(3934616..3935389) 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3935389 5191037 Pput_3521 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001268831.1 3934616 R 351746 CDS YP_001268832.1 148548730 5191038 complement(3935403..3936530) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 3936530 5191038 Pput_3522 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001268832.1 3935403 R 351746 CDS YP_001268833.1 148548731 5190911 complement(3936539..3937732) 1 NC_009512.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3937732 5190911 Pput_3523 Pseudomonas putida F1 acetyl-CoA acetyltransferase YP_001268833.1 3936539 R 351746 CDS YP_001268834.1 148548732 5190912 complement(3937744..3938511) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3938511 5190912 Pput_3524 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268834.1 3937744 R 351746 CDS YP_001268835.1 148548733 5190730 complement(3938525..3940174) 1 NC_009512.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3940174 5190730 Pput_3525 Pseudomonas putida F1 AMP-dependent synthetase and ligase YP_001268835.1 3938525 R 351746 CDS YP_001268836.1 148548734 5190731 complement(3940294..3944739) 1 NC_009512.1 SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein 3944739 5190731 Pput_3526 Pseudomonas putida F1 hypothetical protein YP_001268836.1 3940294 R 351746 CDS YP_001268837.1 148548735 5190798 complement(3944886..3945908) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 3945908 5190798 Pput_3527 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001268837.1 3944886 R 351746 CDS YP_001268838.1 148548736 5190799 complement(3946109..3946972) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3946972 5190799 Pput_3528 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268838.1 3946109 R 351746 CDS YP_001268839.1 148548737 5193683 3947085..3948191 1 NC_009512.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 3948191 5193683 Pput_3529 Pseudomonas putida F1 2-aminoethylphosphonate--pyruvate transaminase YP_001268839.1 3947085 D 351746 CDS YP_001268840.1 148548738 5193684 3948226..3949053 1 NC_009512.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3949053 5193684 Pput_3530 Pseudomonas putida F1 phosphonoacetaldehyde hydrolase YP_001268840.1 3948226 D 351746 CDS YP_001268841.1 148548739 5191905 complement(3949282..3950346) 1 NC_009512.1 PFAM: protein of unknown function UPF0118; hypothetical protein 3950346 5191905 Pput_3531 Pseudomonas putida F1 hypothetical protein YP_001268841.1 3949282 R 351746 CDS YP_001268842.1 148548740 5191906 3950480..3951814 1 NC_009512.1 PFAM: peptidase U32; peptidase U32 3951814 5191906 Pput_3532 Pseudomonas putida F1 peptidase U32 YP_001268842.1 3950480 D 351746 CDS YP_001268843.1 148548741 5194228 3952272..3952700 1 NC_009512.1 PFAM: protein of unknown function DUF411; hypothetical protein 3952700 5194228 Pput_3534 Pseudomonas putida F1 hypothetical protein YP_001268843.1 3952272 D 351746 CDS YP_001268844.1 148548742 5192490 3952700..3953137 1 NC_009512.1 hypothetical protein 3953137 5192490 Pput_3535 Pseudomonas putida F1 hypothetical protein YP_001268844.1 3952700 D 351746 CDS YP_001268845.1 148548743 5193478 3953213..3954211 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3954211 5193478 Pput_3536 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001268845.1 3953213 D 351746 CDS YP_001268846.1 148548744 5193479 complement(3954284..3954865) 1 NC_009512.1 PFAM: DinB family protein; DinB family protein 3954865 5193479 Pput_3537 Pseudomonas putida F1 DinB family protein YP_001268846.1 3954284 R 351746 CDS YP_001268847.1 148548745 5192968 complement(3954879..3955985) 1 NC_009512.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 3955985 5192968 Pput_3538 Pseudomonas putida F1 AFG1 family ATPase YP_001268847.1 3954879 R 351746 CDS YP_001268848.1 148548746 5192969 complement(3956028..3957173) 1 NC_009512.1 PFAM: glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 3957173 5192969 Pput_3539 Pseudomonas putida F1 glucose sorbosone dehydrogenase YP_001268848.1 3956028 R 351746 CDS YP_001268849.1 148548747 5191168 complement(3957196..3957513) 1 NC_009512.1 hypothetical protein 3957513 5191168 Pput_3540 Pseudomonas putida F1 hypothetical protein YP_001268849.1 3957196 R 351746 CDS YP_001268850.1 148548748 5191169 complement(3957669..3958634) 1 NC_009512.1 catalyzes the formation of putrescine from agmatine; agmatinase 3958634 5191169 Pput_3541 Pseudomonas putida F1 agmatinase YP_001268850.1 3957669 R 351746 CDS YP_001268851.1 148548749 5192596 complement(3958660..3959739) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 3959739 5192596 Pput_3542 Pseudomonas putida F1 extracellular solute-binding protein YP_001268851.1 3958660 R 351746 CDS YP_001268852.1 148548750 5192597 3959776..3960732 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3960732 5192597 Pput_3543 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268852.1 3959776 D 351746 CDS YP_001268853.1 148548751 5191911 complement(3961221..3963647) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3963647 5191911 Pput_3544 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001268853.1 3961221 R 351746 CDS YP_001268854.1 148548752 5191912 complement(3963875..3964999) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: FecR protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; anti-FecI sigma factor FecR 3964999 5191912 Pput_3545 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001268854.1 3963875 R 351746 CDS YP_001268855.1 148548753 5191672 3965131..3965610 1 NC_009512.1 SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein 3965610 5191672 Pput_3546 Pseudomonas putida F1 water stress/hypersensitive response protein YP_001268855.1 3965131 D 351746 CDS YP_001268856.1 148548754 5191673 complement(3965631..3965894) 1 NC_009512.1 hypothetical protein 3965894 5191673 Pput_3547 Pseudomonas putida F1 hypothetical protein YP_001268856.1 3965631 R 351746 CDS YP_001268857.1 148548755 5191743 3965917..3966345 1 NC_009512.1 PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 3966345 5191743 Pput_3548 Pseudomonas putida F1 hypothetical protein YP_001268857.1 3965917 D 351746 CDS YP_001268858.1 148548756 5191744 complement(3966368..3966985) 1 NC_009512.1 PFAM: tRNA--hydroxylase; tRNA--hydroxylase 3966985 5191744 Pput_3549 Pseudomonas putida F1 tRNA--hydroxylase YP_001268858.1 3966368 R 351746 CDS YP_001268859.1 148548757 5191689 3967140..3968003 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 3968003 5191689 Pput_3550 Pseudomonas putida F1 UspA domain-containing protein YP_001268859.1 3967140 D 351746 CDS YP_001268860.1 148548758 5191690 complement(3968117..3968320) 1 NC_009512.1 hypothetical protein 3968320 5191690 Pput_3551 Pseudomonas putida F1 hypothetical protein YP_001268860.1 3968117 R 351746 CDS YP_001268861.1 148548759 5192296 complement(3968317..3971199) 1 NC_009512.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 3971199 5192296 Pput_3552 Pseudomonas putida F1 formate dehydrogenase subunit alpha YP_001268861.1 3968317 R 351746 CDS YP_001268862.1 148548760 5192297 complement(3971196..3972755) 1 NC_009512.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) 3972755 5192297 Pput_3553 Pseudomonas putida F1 NADH dehydrogenase (quinone) YP_001268862.1 3971196 R 351746 CDS YP_001268863.1 148548761 5192540 complement(3972749..3973231) 1 NC_009512.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 3973231 5192540 Pput_3554 Pseudomonas putida F1 formate dehydrogenase subunit gamma YP_001268863.1 3972749 R 351746 CDS YP_001268864.1 148548762 5192541 complement(3973633..3974154) 1 NC_009512.1 PFAM: ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 3974154 5192541 Pput_3555 Pseudomonas putida F1 ProQ activator of osmoprotectant transporter ProP YP_001268864.1 3973633 R 351746 CDS YP_001268865.1 148548763 5195437 complement(3974277..3974831) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3974831 5195437 Pput_3556 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268865.1 3974277 R 351746 CDS YP_001268866.1 148548764 5195438 complement(3975015..3976373) 1 NC_009512.1 PFAM: aminotransferase class-III; putative aminotransferase 3976373 5195438 Pput_3557 Pseudomonas putida F1 putative aminotransferase YP_001268866.1 3975015 R 351746 CDS YP_001268867.1 148548765 5191144 complement(3976443..3977216) 1 NC_009512.1 PFAM: peptidase C26; peptidase C26 3977216 5191144 Pput_3558 Pseudomonas putida F1 peptidase C26 YP_001268867.1 3976443 R 351746 CDS YP_001268868.1 148548766 5191145 complement(3977288..3978634) 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase 3978634 5191145 Pput_3559 Pseudomonas putida F1 glutamine synthetase YP_001268868.1 3977288 R 351746 CDS YP_001268869.1 148548767 5192246 complement(3978662..3979216) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3979216 5192246 Pput_3560 Pseudomonas putida F1 XRE family transcriptional regulator YP_001268869.1 3978662 R 351746 CDS YP_001268870.1 148548768 5192247 3979430..3980323 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3980323 5192247 Pput_3561 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268870.1 3979430 D 351746 CDS YP_001268871.1 148548769 5192398 3980423..3981127 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3981127 5192398 Pput_3562 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001268871.1 3980423 D 351746 CDS YP_001268872.1 148548770 5192399 3981209..3981601 1 NC_009512.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3981601 5192399 Pput_3563 Pseudomonas putida F1 glutathione-dependent formaldehyde-activating protein YP_001268872.1 3981209 D 351746 CDS YP_001268873.1 148548771 5192653 3981738..3982577 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; AraC family transcriptional regulator 3982577 5192653 Pput_3564 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268873.1 3981738 D 351746 CDS YP_001268874.1 148548772 5192654 complement(3982649..3983623) 1 NC_009512.1 hypothetical protein 3983623 5192654 Pput_3565 Pseudomonas putida F1 hypothetical protein YP_001268874.1 3982649 R 351746 CDS YP_001268875.1 148548773 5191404 complement(3983620..3984183) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3984183 5191404 Pput_3566 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268875.1 3983620 R 351746 CDS YP_001268876.1 148548774 5191405 complement(3984622..3985071) 1 NC_009512.1 hypothetical protein 3985071 5191405 Pput_3567 Pseudomonas putida F1 hypothetical protein YP_001268876.1 3984622 R 351746 CDS YP_001268877.1 148548775 5193247 complement(3985258..3985347) 1 NC_009512.1 hypothetical protein 3985347 5193247 Pput_3568 Pseudomonas putida F1 hypothetical protein YP_001268877.1 3985258 R 351746 CDS YP_001268878.1 148548776 5193248 3985541..3986167 1 NC_009512.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3986167 5193248 Pput_3569 Pseudomonas putida F1 lysine exporter protein LysE/YggA YP_001268878.1 3985541 D 351746 CDS YP_001268879.1 148548777 5191278 complement(3986213..3986521) 1 NC_009512.1 PFAM: Chorismate mutase; chorismate mutase 3986521 5191278 Pput_3570 Pseudomonas putida F1 chorismate mutase YP_001268879.1 3986213 R 351746 CDS YP_001268880.1 148548778 5191279 3986663..3987619 1 NC_009512.1 SMART: PDZ/DHR/GLGF domain protein; PDZ/DHR/GLGF domain-containing protein 3987619 5191279 Pput_3571 Pseudomonas putida F1 PDZ/DHR/GLGF domain-containing protein YP_001268880.1 3986663 D 351746 CDS YP_001268881.1 148548779 5194229 3988562..3989572 1 NC_009512.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; tRNA-dihydrouridine synthase A 3989572 5194229 Pput_3573 Pseudomonas putida F1 tRNA-dihydrouridine synthase A YP_001268881.1 3988562 D 351746 CDS YP_001268882.2 161936355 5191159 3989729..3990655 1 NC_009512.1 TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3990655 5191159 Pput_3574 Pseudomonas putida F1 transaldolase B YP_001268882.2 3989729 D 351746 CDS YP_001268883.1 148548781 5193492 3990835..3992688 1 NC_009512.1 hypothetical protein 3992688 5193492 Pput_3575 Pseudomonas putida F1 hypothetical protein YP_001268883.1 3990835 D 351746 CDS YP_001268884.1 148548782 5193493 complement(3992834..3993316) 1 NC_009512.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 3993316 5193493 Pput_3576 Pseudomonas putida F1 anti-sigma-factor antagonist YP_001268884.1 3992834 R 351746 CDS YP_001268885.1 148548783 5195239 complement(3993313..3994494) 1 NC_009512.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein 3994494 5195239 Pput_3577 Pseudomonas putida F1 response regulator receiver protein YP_001268885.1 3993313 R 351746 CDS YP_001268886.1 148548784 5195240 3994765..3995064 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3995064 5195240 Pput_3578 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001268886.1 3994765 D 351746 CDS YP_001268887.1 148548785 5191674 complement(3995099..3995806) 1 NC_009512.1 PFAM: VacJ family lipoprotein; VacJ family lipoprotein 3995806 5191674 Pput_3579 Pseudomonas putida F1 VacJ family lipoprotein YP_001268887.1 3995099 R 351746 CDS YP_001268888.1 148548786 5191675 3996008..3996571 1 NC_009512.1 hypothetical protein 3996571 5191675 Pput_3580 Pseudomonas putida F1 hypothetical protein YP_001268888.1 3996008 D 351746 CDS YP_001268889.1 148548787 5191274 3996694..3996957 1 NC_009512.1 hypothetical protein 3996957 5191274 Pput_3581 Pseudomonas putida F1 hypothetical protein YP_001268889.1 3996694 D 351746 CDS YP_001268890.1 148548788 5191275 complement(3996989..3997819) 1 NC_009512.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3997819 queF 5191275 queF Pseudomonas putida F1 7-cyano-7-deazaguanine reductase YP_001268890.1 3996989 R 351746 CDS YP_001268891.1 148548789 5191815 complement(3997888..3998415) 1 NC_009512.1 hypothetical protein 3998415 5191815 Pput_3583 Pseudomonas putida F1 hypothetical protein YP_001268891.1 3997888 R 351746 CDS YP_001268892.1 148548790 5191816 3998617..3999297 1 NC_009512.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 3999297 5191816 Pput_3584 Pseudomonas putida F1 two component heavy metal response transcriptional regulator YP_001268892.1 3998617 D 351746 CDS YP_001268893.1 148548791 5192605 3999297..4000646 1 NC_009512.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 4000646 5192605 Pput_3585 Pseudomonas putida F1 heavy metal sensor signal transduction histidine kinase YP_001268893.1 3999297 D 351746 CDS YP_001268894.1 148548792 5192606 complement(4000686..4001927) 1 NC_009512.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 4001927 5192606 Pput_3586 Pseudomonas putida F1 LolC/E family lipoprotein releasing system, transmembrane protein YP_001268894.1 4000686 R 351746 CDS YP_001268895.1 148548793 5192355 complement(4001988..4002686) 1 NC_009512.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 4002686 5192355 Pput_3587 Pseudomonas putida F1 lipoprotein releasing system, ATP-binding protein YP_001268895.1 4001988 R 351746 CDS YP_001268896.1 148548794 5192356 complement(4002679..4003929) 1 NC_009512.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 4003929 5192356 Pput_3588 Pseudomonas putida F1 LolC/E family lipoprotein releasing system, transmembrane protein YP_001268896.1 4002679 R 351746 CDS YP_001268897.1 148548795 5194740 4004023..4004607 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 4004607 5194740 Pput_3589 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001268897.1 4004023 D 351746 CDS YP_001268898.1 148548796 5194741 4004639..4005355 1 NC_009512.1 PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4005355 5194741 Pput_3590 Pseudomonas putida F1 glycerophosphoryl diester phosphodiesterase YP_001268898.1 4004639 D 351746 CDS YP_001268899.1 148548797 5192190 complement(4005404..4006798) 1 NC_009512.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4006798 5192190 Pput_3591 Pseudomonas putida F1 soluble pyridine nucleotide transhydrogenase YP_001268899.1 4005404 R 351746 CDS YP_001268900.1 148548798 5192191 complement(4007003..4008001) 1 NC_009512.1 PFAM: ApbE family lipoprotein; ApbE family lipoprotein 4008001 5192191 Pput_3592 Pseudomonas putida F1 ApbE family lipoprotein YP_001268900.1 4007003 R 351746 CDS YP_001268901.1 148548799 5192615 complement(4008181..4009644) 1 NC_009512.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 4009644 5192615 Pput_3593 Pseudomonas putida F1 glyceraldehyde-3-phosphate dehydrogenase YP_001268901.1 4008181 R 351746 CDS YP_001268902.1 148548800 5192616 4009812..4013261 1 NC_009512.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 4013261 5192616 Pput_3594 Pseudomonas putida F1 transcription-repair coupling factor YP_001268902.1 4009812 D 351746 CDS YP_001268903.1 148548801 5191197 4013271..4013843 1 NC_009512.1 hypothetical protein 4013843 5191197 Pput_3595 Pseudomonas putida F1 hypothetical protein YP_001268903.1 4013271 D 351746 CDS YP_001268904.1 148548802 5191198 4013848..4017165 1 NC_009512.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; non-specific serine/threonine protein kinase 4017165 5191198 Pput_3596 Pseudomonas putida F1 non-specific serine/threonine protein kinase YP_001268904.1 4013848 D 351746 CDS YP_001268905.1 148548803 5194500 complement(4017566..4018576) 1 NC_009512.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 4018576 5194500 Pput_3597 Pseudomonas putida F1 beta-hexosaminidase YP_001268905.1 4017566 R 351746 CDS YP_001268906.1 148548804 5194501 complement(4018754..4019461) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4019461 5194501 Pput_3598 Pseudomonas putida F1 TetR family transcriptional regulator YP_001268906.1 4018754 R 351746 CDS YP_001268907.1 148548805 5192302 4019676..4020284 1 NC_009512.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4020284 5192302 Pput_3599 Pseudomonas putida F1 LexA repressor YP_001268907.1 4019676 D 351746 CDS YP_001268908.1 148548806 5192303 4020298..4020774 1 NC_009512.1 SOS-response cell division inhibitor 4020774 5192303 Pput_3600 Pseudomonas putida F1 SOS-response cell division inhibitor YP_001268908.1 4020298 D 351746 CDS YP_001268909.1 148548807 5190258 complement(4020825..4021058) 1 NC_009512.1 hypothetical protein 4021058 5190258 Pput_3601 Pseudomonas putida F1 hypothetical protein YP_001268909.1 4020825 R 351746 CDS YP_001268910.1 148548808 5190259 complement(4021109..4021798) 1 NC_009512.1 hypothetical protein 4021798 5190259 Pput_3602 Pseudomonas putida F1 hypothetical protein YP_001268910.1 4021109 R 351746 CDS YP_001268911.1 148548809 5193061 complement(4021814..4024423) 1 NC_009512.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 4024423 5193061 Pput_3603 Pseudomonas putida F1 DNA topoisomerase I YP_001268911.1 4021814 R 351746 CDS YP_001268912.1 148548810 5193062 complement(4024524..4024775) 1 NC_009512.1 PFAM: protein of unknown function DUF1653; hypothetical protein 4024775 5193062 Pput_3604 Pseudomonas putida F1 hypothetical protein YP_001268912.1 4024524 R 351746 CDS YP_001268913.1 148548811 5190371 complement(4024851..4026026) 1 NC_009512.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4026026 fadA 5190371 fadA Pseudomonas putida F1 3-ketoacyl-CoA thiolase YP_001268913.1 4024851 R 351746 CDS YP_001268914.1 148548812 5190372 complement(4026058..4028205) 1 NC_009512.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4028205 fadB 5190372 fadB Pseudomonas putida F1 multifunctional fatty acid oxidation complex subunit alpha YP_001268914.1 4026058 R 351746 CDS YP_001268915.1 148548813 5193570 complement(4028817..4029254) 1 NC_009512.1 hypothetical protein 4029254 5193570 Pput_3607 Pseudomonas putida F1 hypothetical protein YP_001268915.1 4028817 R 351746 CDS YP_001268916.1 148548814 5193571 4029365..4029805 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 4029805 5193571 Pput_3608 Pseudomonas putida F1 UspA domain-containing protein YP_001268916.1 4029365 D 351746 CDS YP_001268917.1 148548815 5195402 complement(4029913..4031841) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4031841 5195402 Pput_3609 Pseudomonas putida F1 ABC transporter-like protein YP_001268917.1 4029913 R 351746 CDS YP_001268918.1 148548816 5195403 4032038..4033987 1 NC_009512.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 4033987 5195403 Pput_3610 Pseudomonas putida F1 lytic transglycosylase subunit YP_001268918.1 4032038 D 351746 CDS YP_001268919.1 148548817 5193854 complement(4034099..4034902) 1 NC_009512.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; MOSC domain-containing protein 4034902 5193854 Pput_3611 Pseudomonas putida F1 MOSC domain-containing protein YP_001268919.1 4034099 R 351746 CDS YP_001268920.1 148548818 5193855 complement(4034958..4035893) 1 NC_009512.1 PFAM: response regulator receiver; CheW domain protein; putative CheW protein 4035893 5193855 Pput_3612 Pseudomonas putida F1 putative CheW protein YP_001268920.1 4034958 R 351746 CDS YP_001268921.1 148548819 5195132 4036242..4036754 1 NC_009512.1 putative CheA signal transduction histidine kinase 4036754 5195132 Pput_3613 Pseudomonas putida F1 putative CheA signal transduction histidine kinase YP_001268921.1 4036242 D 351746 CDS YP_001268922.1 148548820 5195133 4037121..4038017 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 4038017 5195133 Pput_3614 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001268922.1 4037121 D 351746 CDS YP_001268923.1 148548821 5191347 4038007..4038666 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4038666 5191347 Pput_3615 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001268923.1 4038007 D 351746 CDS YP_001268924.1 148548822 5191348 complement(4038650..4039537) 1 NC_009512.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 4039537 5191348 Pput_3616 Pseudomonas putida F1 lipid kinase YP_001268924.1 4038650 R 351746 CDS YP_001268925.1 148548823 5192599 4039794..4041041 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4041041 5192599 Pput_3617 Pseudomonas putida F1 group 1 glycosyl transferase YP_001268925.1 4039794 D 351746 CDS YP_001268926.1 148548824 5192600 complement(4041030..4042247) 1 NC_009512.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; molybdenum cofactor synthesis domain-containing protein 4042247 5192600 Pput_3618 Pseudomonas putida F1 molybdenum cofactor synthesis domain-containing protein YP_001268926.1 4041030 R 351746 CDS YP_001268927.1 148548825 5191154 complement(4042240..4042779) 1 NC_009512.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 4042779 5191154 Pput_3619 Pseudomonas putida F1 molybdenum cofactor biosynthesis protein B YP_001268927.1 4042240 R 351746 CDS YP_001268928.1 148548826 5191155 4042967..4043188 1 NC_009512.1 PFAM: protein of unknown function DUF903; hypothetical protein 4043188 5191155 Pput_3620 Pseudomonas putida F1 hypothetical protein YP_001268928.1 4042967 D 351746 CDS YP_001268929.1 148548827 5191207 complement(4043453..4045120) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4045120 5191207 Pput_3621 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268929.1 4043453 R 351746 CDS YP_001268930.1 148548828 5190841 complement(4045241..4047004) 1 NC_009512.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 4047004 5190841 Pput_3622 Pseudomonas putida F1 lipid ABC transporter ATPase/inner membrane protein YP_001268930.1 4045241 R 351746 CDS YP_001268931.1 148548829 5191474 4047215..4047388 1 NC_009512.1 hypothetical protein 4047388 5191474 Pput_3623 Pseudomonas putida F1 hypothetical protein YP_001268931.1 4047215 D 351746 CDS YP_001268932.1 148548830 5191475 complement(4047503..4048645) 1 NC_009512.1 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 4048645 5191475 Pput_3624 Pseudomonas putida F1 erythronate-4-phosphate dehydrogenase YP_001268932.1 4047503 R 351746 CDS YP_001268933.1 148548831 5194093 complement(4048706..4048948) 1 NC_009512.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 4048948 5194093 Pput_3625 Pseudomonas putida F1 sulfur transfer protein SirA YP_001268933.1 4048706 R 351746 CDS YP_001268934.1 148548832 5194094 complement(4049741..4050805) 1 NC_009512.1 putative RNA 2'-O-ribose methyltransferase 4050805 5194094 Pput_3626 Pseudomonas putida F1 putative RNA 2'-O-ribose methyltransferase YP_001268934.1 4049741 R 351746 CDS YP_001268935.1 148548833 5194934 4051030..4053771 1 NC_009512.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4053771 acnA 5194934 acnA Pseudomonas putida F1 aconitate hydratase YP_001268935.1 4051030 D 351746 CDS YP_001268936.1 148548834 5194935 4054022..4055587 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; methyl-accepting chemotaxis sensory transducer 4055587 5194935 Pput_3628 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001268936.1 4054022 D 351746 CDS YP_001268937.1 148548835 5192074 complement(4055824..4056729) 1 NC_009512.1 PFAM: pseudouridine synthase; pseudouridine synthase 4056729 5192074 Pput_3629 Pseudomonas putida F1 pseudouridine synthase YP_001268937.1 4055824 R 351746 CDS YP_001268938.1 148548836 5192075 complement(4056760..4057068) 1 NC_009512.1 hypothetical protein 4057068 5192075 Pput_3630 Pseudomonas putida F1 hypothetical protein YP_001268938.1 4056760 R 351746 CDS YP_001268939.1 148548837 5191406 complement(4057134..4057565) 1 NC_009512.1 PFAM: Peptidase M15A; peptidase M15A 4057565 5191406 Pput_3631 Pseudomonas putida F1 peptidase M15A YP_001268939.1 4057134 R 351746 CDS YP_001268940.1 148548838 5191407 complement(4057674..4057913) 1 NC_009512.1 PFAM: glutaredoxin 2; glutaredoxin 4057913 5191407 Pput_3632 Pseudomonas putida F1 glutaredoxin YP_001268940.1 4057674 R 351746 CDS YP_001268941.1 148548839 5194888 complement(4057987..4059195) 1 NC_009512.1 PFAM: Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 4059195 5194888 Pput_3633 Pseudomonas putida F1 Rh family protein/ammonium transporter YP_001268941.1 4057987 R 351746 CDS YP_001268942.1 148548840 5194889 4059508..4059822 1 NC_009512.1 PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 4059822 5194889 Pput_3634 Pseudomonas putida F1 hypothetical protein YP_001268942.1 4059508 D 351746 CDS YP_001268943.1 148548841 5195408 4059832..4060206 1 NC_009512.1 hypothetical protein 4060206 5195408 Pput_3635 Pseudomonas putida F1 hypothetical protein YP_001268943.1 4059832 D 351746 CDS YP_001268944.1 148548842 5195409 4060203..4060532 1 NC_009512.1 hypothetical protein 4060532 5195409 Pput_3636 Pseudomonas putida F1 hypothetical protein YP_001268944.1 4060203 D 351746 CDS YP_001268945.1 148548843 5194724 4060590..4062008 1 NC_009512.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 4062008 5194724 Pput_3637 Pseudomonas putida F1 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001268945.1 4060590 D 351746 CDS YP_001268946.1 148548844 5194725 4062291..4062908 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4062908 5194725 Pput_3638 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001268946.1 4062291 D 351746 CDS YP_001268947.1 148548845 5193594 4062917..4066549 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 4066549 5193594 Pput_3639 Pseudomonas putida F1 PAS/PAC sensor hybrid histidine kinase YP_001268947.1 4062917 D 351746 CDS YP_001268948.1 148548846 5193595 4066591..4066935 1 NC_009512.1 PFAM: protein of unknown function DUF469; hypothetical protein 4066935 5193595 Pput_3640 Pseudomonas putida F1 hypothetical protein YP_001268948.1 4066591 D 351746 CDS YP_001268949.1 148548847 5191909 4067136..4068590 1 NC_009512.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 4068590 5191909 Pput_3641 Pseudomonas putida F1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001268949.1 4067136 D 351746 CDS YP_001268950.1 148548848 5191910 complement(4068721..4071111) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 4071111 5191910 Pput_3642 Pseudomonas putida F1 PAS/PAC sensor-containing diguanylate cyclase YP_001268950.1 4068721 R 351746 CDS YP_001268951.2 229328218 5194131 complement(4071206..4073398) 1 NC_009512.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 4073398 rlmL 5194131 rlmL Pseudomonas putida F1 23S rRNA m(2)G2445 methyltransferase YP_001268951.2 4071206 R 351746 CDS YP_001268952.1 148548850 5194132 4073961..4074176 1 NC_009512.1 PFAM: ribosome modulation factor; ribosome modulation factor 4074176 5194132 Pput_3644 Pseudomonas putida F1 ribosome modulation factor YP_001268952.1 4073961 D 351746 CDS YP_001268953.1 148548851 5190298 complement(4074340..4075449) 1 NC_009512.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 4075449 5190298 Pput_3645 Pseudomonas putida F1 dihydroorotate dehydrogenase 2 YP_001268953.1 4074340 R 351746 CDS YP_001268954.1 148548852 5190299 4075500..4076714 1 NC_009512.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 4076714 5190299 Pput_3646 Pseudomonas putida F1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001268954.1 4075500 D 351746 CDS YP_001268955.1 148548853 5192644 4076726..4077301 1 NC_009512.1 PFAM: response regulator receiver; ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 4077301 5192644 Pput_3647 Pseudomonas putida F1 response regulator receiver/ANTAR domain-containing protein YP_001268955.1 4076726 D 351746 CDS YP_001268956.1 148548854 5192645 4077486..4078697 1 NC_009512.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 4078697 5192645 Pput_3648 Pseudomonas putida F1 nitrite transporter YP_001268956.1 4077486 D 351746 CDS YP_001268957.1 148548855 5191172 4078707..4080377 1 NC_009512.1 PFAM: protein kinase; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; protein kinase 4080377 5191172 Pput_3649 Pseudomonas putida F1 protein kinase YP_001268957.1 4078707 D 351746 CDS YP_001268958.1 148548856 5191173 4080405..4081145 1 NC_009512.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 4081145 5191173 Pput_3650 Pseudomonas putida F1 uroporphyrin-III C-methyltransferase YP_001268958.1 4080405 D 351746 CDS YP_001268959.1 148548857 5194833 complement(4081232..4082266) 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpF family protein; OmpF family protein 4082266 5194833 Pput_3651 Pseudomonas putida F1 OmpF family protein YP_001268959.1 4081232 R 351746 CDS YP_001268960.1 148548858 5194834 complement(4082378..4082944) 1 NC_009512.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 4082944 5194834 Pput_3652 Pseudomonas putida F1 RNA polymerase sigma factor SigX YP_001268960.1 4082378 R 351746 CDS YP_001268961.1 148548859 5195074 complement(4083058..4083882) 1 NC_009512.1 PFAM: Conserved TM helix repeat-containing protein; TM helix repeat-containing protein 4083882 5195074 Pput_3653 Pseudomonas putida F1 TM helix repeat-containing protein YP_001268961.1 4083058 R 351746 CDS YP_001268962.1 148548860 5195075 complement(4083885..4084157) 1 NC_009512.1 hypothetical protein 4084157 5195075 Pput_3654 Pseudomonas putida F1 hypothetical protein YP_001268962.1 4083885 R 351746 CDS YP_001268963.1 148548861 5193598 complement(4084245..4085240) 1 NC_009512.1 PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein 4085240 5193598 Pput_3655 Pseudomonas putida F1 CorA family protein Mg2+ transporter protein YP_001268963.1 4084245 R 351746 CDS YP_001268964.1 148548862 5193599 complement(4085268..4085759) 1 NC_009512.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4085759 5193599 Pput_3656 Pseudomonas putida F1 ribonuclease activity regulator protein RraA YP_001268964.1 4085268 R 351746 CDS YP_001268965.1 148548863 5194911 complement(4086118..4087146) 1 NC_009512.1 hypothetical protein 4087146 5194911 Pput_3657 Pseudomonas putida F1 hypothetical protein YP_001268965.1 4086118 R 351746 CDS YP_001268966.1 148548864 5194912 complement(4087213..4089588) 1 NC_009512.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 4089588 5194912 Pput_3658 Pseudomonas putida F1 phosphoenolpyruvate synthase YP_001268966.1 4087213 R 351746 CDS YP_001268967.1 148548865 5191592 4089780..4090598 1 NC_009512.1 PFAM: protein of unknown function DUF299; hypothetical protein 4090598 5191592 Pput_3659 Pseudomonas putida F1 hypothetical protein YP_001268967.1 4089780 D 351746 CDS YP_001268968.1 148548866 5191593 complement(4090708..4095573) 1 NC_009512.1 PFAM: NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 4095573 5191593 Pput_3660 Pseudomonas putida F1 NAD-glutamate dehydrogenase YP_001268968.1 4090708 R 351746 CDS YP_001268969.1 148548867 5191722 4095848..4096201 1 NC_009512.1 hypothetical protein 4096201 5191722 Pput_3661 Pseudomonas putida F1 hypothetical protein YP_001268969.1 4095848 D 351746 CDS YP_001268970.1 148548868 5191723 complement(4096401..4097306) 1 NC_009512.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 4097306 5191723 Pput_3662 Pseudomonas putida F1 DNA-binding transcriptional regulator LysR YP_001268970.1 4096401 R 351746 CDS YP_001268971.1 148548869 5194427 4097430..4098662 1 NC_009512.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 4098662 5194427 Pput_3663 Pseudomonas putida F1 diaminopimelate decarboxylase YP_001268971.1 4097430 D 351746 CDS YP_001268972.1 148548870 5194428 4098890..4099390 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 4099390 5194428 Pput_3664 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001268972.1 4098890 D 351746 CDS YP_001268973.1 148548871 5192639 4099396..4100331 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 4100331 5192639 Pput_3665 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001268973.1 4099396 D 351746 CDS YP_001268974.1 148548872 5192640 4100442..4102928 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4102928 5192640 Pput_3666 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001268974.1 4100442 D 351746 CDS YP_001268975.1 148548873 5190786 4103236..4105908 1 NC_009512.1 hypothetical protein 4105908 5190786 Pput_3667 Pseudomonas putida F1 hypothetical protein YP_001268975.1 4103236 D 351746 CDS YP_001268976.1 148548874 5190787 4105908..4107038 1 NC_009512.1 hypothetical protein 4107038 5190787 Pput_3668 Pseudomonas putida F1 hypothetical protein YP_001268976.1 4105908 D 351746 CDS YP_001268977.1 148548875 5195194 complement(4107118..4108086) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4108086 5195194 Pput_3669 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268977.1 4107118 R 351746 CDS YP_001268978.1 148548876 5195195 4108311..4108754 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4108754 5195195 Pput_3670 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001268978.1 4108311 D 351746 CDS YP_001268979.1 148548877 5191527 4108774..4109598 1 NC_009512.1 PFAM: AraC protein, arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4109598 5191527 Pput_3671 Pseudomonas putida F1 AraC family transcriptional regulator YP_001268979.1 4108774 D 351746 CDS YP_001268980.1 148548878 5191528 4109707..4110093 1 NC_009512.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 4110093 5191528 Pput_3672 Pseudomonas putida F1 cupin YP_001268980.1 4109707 D 351746 CDS YP_001268981.1 148548879 5195052 4110263..4110973 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4110973 5195052 Pput_3673 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001268981.1 4110263 D 351746 CDS YP_001268982.1 148548880 5195053 4111077..4112495 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4112495 5195053 Pput_3674 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001268982.1 4111077 D 351746 CDS YP_001268983.1 148548881 5192098 4112697..4113842 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4113842 5192098 Pput_3675 Pseudomonas putida F1 secretion protein HlyD family protein YP_001268983.1 4112697 D 351746 CDS YP_001268984.1 148548882 5192099 4113832..4115346 1 NC_009512.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4115346 5192099 Pput_3676 Pseudomonas putida F1 EmrB/QacA family drug resistance transporter YP_001268984.1 4113832 D 351746 CDS YP_001268985.1 148548883 5194781 4115413..4116177 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 4116177 5194781 Pput_3677 Pseudomonas putida F1 GntR family transcriptional regulator YP_001268985.1 4115413 D 351746 CDS YP_001268986.1 148548884 5194782 complement(4116231..4119314) 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 4119314 5194782 Pput_3678 Pseudomonas putida F1 acriflavin resistance protein YP_001268986.1 4116231 R 351746 CDS YP_001268987.1 148548885 5195210 complement(4119311..4120408) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 4120408 5195210 Pput_3679 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001268987.1 4119311 R 351746 CDS YP_001268988.1 148548886 5195211 4120493..4120948 1 NC_009512.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 4120948 5195211 Pput_3680 Pseudomonas putida F1 MerR family transcriptional regulator YP_001268988.1 4120493 D 351746 CDS YP_001268989.1 148548887 5192710 4121095..4121343 1 NC_009512.1 PFAM: CsbD family protein; CsbD family protein 4121343 5192710 Pput_3681 Pseudomonas putida F1 CsbD family protein YP_001268989.1 4121095 D 351746 CDS YP_001268990.1 148548888 5192711 complement(4121396..4122649) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 4122649 5192711 Pput_3682 Pseudomonas putida F1 outer membrane porin YP_001268990.1 4121396 R 351746 CDS YP_001268991.1 148548889 5194734 complement(4122713..4124017) 1 NC_009512.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; CitMHS family citrate/H+ symporter 4124017 5194734 Pput_3683 Pseudomonas putida F1 CitMHS family citrate/H+ symporter YP_001268991.1 4122713 R 351746 CDS YP_001268992.1 148548890 5194735 complement(4124132..4125439) 1 NC_009512.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 4125439 5194735 Pput_3684 Pseudomonas putida F1 sodium:dicarboxylate symporter YP_001268992.1 4124132 R 351746 CDS YP_001268993.1 148548891 5192145 complement(4125511..4126623) 1 NC_009512.1 PFAM: protein of unknown function DUF453; hypothetical protein 4126623 5192145 Pput_3685 Pseudomonas putida F1 hypothetical protein YP_001268993.1 4125511 R 351746 CDS YP_001268994.1 148548892 5192146 4126738..4127631 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4127631 5192146 Pput_3686 Pseudomonas putida F1 LysR family transcriptional regulator YP_001268994.1 4126738 D 351746 CDS YP_001268995.1 148548893 5191288 4127698..4128489 1 NC_009512.1 hypothetical protein 4128489 5191288 Pput_3687 Pseudomonas putida F1 hypothetical protein YP_001268995.1 4127698 D 351746 CDS YP_001268996.1 148548894 5191289 complement(4128581..4128877) 1 NC_009512.1 hypothetical protein 4128877 5191289 Pput_3688 Pseudomonas putida F1 hypothetical protein YP_001268996.1 4128581 R 351746 CDS YP_001268997.1 148548895 5193733 4129274..4131397 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase, C-terminal domain; HAD family hydrolase 4131397 5193733 Pput_3689 Pseudomonas putida F1 HAD family hydrolase YP_001268997.1 4129274 D 351746 CDS YP_001268998.1 148548896 5193734 complement(4131477..4132661) 1 NC_009512.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4132661 5193734 Pput_3690 Pseudomonas putida F1 acetyl-CoA acetyltransferase YP_001268998.1 4131477 R 351746 CDS YP_001268999.1 148548897 5194313 complement(4132658..4133110) 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 4133110 5194313 Pput_3691 Pseudomonas putida F1 thioesterase superfamily protein YP_001268999.1 4132658 R 351746 CDS YP_001269000.1 148548898 5194314 complement(4133110..4134273) 1 NC_009512.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 4134273 5194314 Pput_3692 Pseudomonas putida F1 iron-containing alcohol dehydrogenase YP_001269000.1 4133110 R 351746 CDS YP_001269001.1 148548899 5193864 complement(4134307..4136082) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 4136082 5193864 Pput_3693 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001269001.1 4134307 R 351746 CDS YP_001269002.1 148548900 5193865 complement(4136079..4137317) 1 NC_009512.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA epimerase 4137317 5193865 Pput_3694 Pseudomonas putida F1 3-hydroxybutyryl-CoA epimerase YP_001269002.1 4136079 R 351746 CDS YP_001269003.1 148548901 5192679 4137345..4138325 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4138325 5192679 Pput_3695 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269003.1 4137345 D 351746 CDS YP_001269004.1 148548902 5192680 4138427..4140388 1 NC_009512.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 4140388 5192680 Pput_3696 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001269004.1 4138427 D 351746 CDS YP_001269005.1 148548903 5195555 complement(4140417..4140710) 1 NC_009512.1 hypothetical protein 4140710 5195555 Pput_3697 Pseudomonas putida F1 hypothetical protein YP_001269005.1 4140417 R 351746 CDS YP_001269006.1 148548904 5195556 complement(4140703..4141089) 1 NC_009512.1 PFAM: protein of unknown function DUF202; hypothetical protein 4141089 5195556 Pput_3698 Pseudomonas putida F1 hypothetical protein YP_001269006.1 4140703 R 351746 CDS YP_001269007.1 148548905 5193364 complement(4141089..4142411) 1 NC_009512.1 PFAM: protein of unknown function DUF1329; hypothetical protein 4142411 5193364 Pput_3699 Pseudomonas putida F1 hypothetical protein YP_001269007.1 4141089 R 351746 CDS YP_001269008.1 148548906 5193365 complement(4142422..4144275) 1 NC_009512.1 PFAM: protein of unknown function DUF1302; hypothetical protein 4144275 5193365 Pput_3700 Pseudomonas putida F1 hypothetical protein YP_001269008.1 4142422 R 351746 CDS YP_001269009.1 148548907 5194694 4144451..4145434 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4145434 5194694 Pput_3701 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269009.1 4144451 D 351746 CDS YP_001269010.1 148548908 5194695 complement(4145447..4146742) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4146742 5194695 Pput_3702 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269010.1 4145447 R 351746 CDS YP_001269011.1 148548909 5190858 complement(4146805..4147971) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 4147971 5190858 Pput_3703 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001269011.1 4146805 R 351746 CDS YP_001269012.1 148548910 5190859 complement(4147986..4149533) 1 NC_009512.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4149533 5190859 Pput_3704 Pseudomonas putida F1 AMP-dependent synthetase and ligase YP_001269012.1 4147986 R 351746 CDS YP_001269013.1 148548911 5191368 4149778..4150560 1 NC_009512.1 PFAM: class II aldolase/adducin family protein; class II aldolase/adducin domain-containing protein 4150560 5191368 Pput_3705 Pseudomonas putida F1 class II aldolase/adducin domain-containing protein YP_001269013.1 4149778 D 351746 CDS YP_001269014.1 148548912 5191369 4150605..4151492 1 NC_009512.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 4151492 5191369 Pput_3706 Pseudomonas putida F1 dihydrodipicolinate synthetase YP_001269014.1 4150605 D 351746 CDS YP_001269015.1 148548913 5193177 4151641..4152855 1 NC_009512.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; benzoate transporter 4152855 5193177 Pput_3707 Pseudomonas putida F1 benzoate transporter YP_001269015.1 4151641 D 351746 CDS YP_001269016.1 148548914 5193178 4152915..4154132 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4154132 5193178 Pput_3708 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269016.1 4152915 D 351746 CDS YP_001269017.1 148548915 5192730 complement(4154168..4155478) 1 NC_009512.1 hypothetical protein 4155478 5192730 Pput_3709 Pseudomonas putida F1 hypothetical protein YP_001269017.1 4154168 R 351746 CDS YP_001269018.1 148548916 5192731 4155706..4156665 1 NC_009512.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; ATPase 4156665 5192731 Pput_3710 Pseudomonas putida F1 ATPase YP_001269018.1 4155706 D 351746 CDS YP_001269019.1 148548917 5194968 4156658..4157614 1 NC_009512.1 PFAM: protein of unknown function DUF58; hypothetical protein 4157614 5194968 Pput_3711 Pseudomonas putida F1 hypothetical protein YP_001269019.1 4156658 D 351746 CDS YP_001269020.1 148548918 5194969 4157611..4158105 1 NC_009512.1 hypothetical protein 4158105 5194969 Pput_3712 Pseudomonas putida F1 hypothetical protein YP_001269020.1 4157611 D 351746 CDS YP_001269021.1 148548919 5193173 4158098..4159174 1 NC_009512.1 PFAM: von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 4159174 5193173 Pput_3713 Pseudomonas putida F1 von Willebrand factor type A domain-containing protein YP_001269021.1 4158098 D 351746 CDS YP_001269022.1 148548920 5193174 4159171..4160889 1 NC_009512.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 4160889 5193174 Pput_3714 Pseudomonas putida F1 hypothetical protein YP_001269022.1 4159171 D 351746 CDS YP_001269023.1 148548921 5193322 4160886..4162517 1 NC_009512.1 hypothetical protein 4162517 5193322 Pput_3715 Pseudomonas putida F1 hypothetical protein YP_001269023.1 4160886 D 351746 CDS YP_001269024.1 148548922 5193323 complement(4162590..4163021) 1 NC_009512.1 hypothetical protein 4163021 5193323 Pput_3716 Pseudomonas putida F1 hypothetical protein YP_001269024.1 4162590 R 351746 CDS YP_001269025.1 148548923 5190228 4163511..4164749 1 NC_009512.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; nuclease SbcCD subunit D 4164749 5190228 Pput_3717 Pseudomonas putida F1 nuclease SbcCD subunit D YP_001269025.1 4163511 D 351746 CDS YP_001269026.1 148548924 5190229 4164746..4168390 1 NC_009512.1 PFAM: SMC domain protein; SMC domain-containing protein 4168390 5190229 Pput_3718 Pseudomonas putida F1 SMC domain-containing protein YP_001269026.1 4164746 D 351746 CDS YP_001269027.1 148548925 5190460 4168387..4168980 1 NC_009512.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 4168980 5190460 Pput_3719 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001269027.1 4168387 D 351746 CDS YP_001269028.1 148548926 5190461 complement(4169053..4169229) 1 NC_009512.1 hypothetical protein 4169229 5190461 Pput_3720 Pseudomonas putida F1 hypothetical protein YP_001269028.1 4169053 R 351746 CDS YP_001269029.1 148548927 5194498 complement(4169352..4170494) 1 NC_009512.1 hypothetical protein 4170494 5194498 Pput_3721 Pseudomonas putida F1 hypothetical protein YP_001269029.1 4169352 R 351746 CDS YP_001269030.1 148548928 5194499 complement(4170448..4170738) 1 NC_009512.1 hypothetical protein 4170738 5194499 Pput_3722 Pseudomonas putida F1 hypothetical protein YP_001269030.1 4170448 R 351746 CDS YP_001269031.1 148548929 5193870 complement(4170890..4173289) 1 NC_009512.1 RND efflux transporter 4173289 5193870 Pput_3723 Pseudomonas putida F1 RND efflux transporter YP_001269031.1 4170890 R 351746 CDS YP_001269032.1 148548930 5193871 complement(4173286..4174326) 1 NC_009512.1 hypothetical protein 4174326 5193871 Pput_3724 Pseudomonas putida F1 hypothetical protein YP_001269032.1 4173286 R 351746 CDS YP_001269033.1 148548931 5191395 complement(4174598..4177255) 1 NC_009512.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase-like; aminopeptidase N 4177255 pepN 5191395 pepN Pseudomonas putida F1 aminopeptidase N YP_001269033.1 4174598 R 351746 CDS YP_001269034.1 148548932 5191396 complement(4177269..4178099) 1 NC_009512.1 hypothetical protein 4178099 5191396 Pput_3726 Pseudomonas putida F1 hypothetical protein YP_001269034.1 4177269 R 351746 CDS YP_001269035.1 148548933 5192619 complement(4178096..4178356) 1 NC_009512.1 PFAM: protein of unknown function DUF1315; hypothetical protein 4178356 5192619 Pput_3727 Pseudomonas putida F1 hypothetical protein YP_001269035.1 4178096 R 351746 CDS YP_001269036.1 148548934 5192620 complement(4178370..4179257) 1 NC_009512.1 PFAM: Rhomboid family protein; rhomboid family protein 4179257 5192620 Pput_3728 Pseudomonas putida F1 rhomboid family protein YP_001269036.1 4178370 R 351746 CDS YP_001269037.1 148548935 5194674 complement(4179254..4180225) 1 NC_009512.1 PFAM: metallophosphoesterase; metallophosphoesterase 4180225 5194674 Pput_3729 Pseudomonas putida F1 metallophosphoesterase YP_001269037.1 4179254 R 351746 CDS YP_001269038.1 148548936 5194675 complement(4180225..4181115) 1 NC_009512.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 4181115 ppnK 5194675 ppnK Pseudomonas putida F1 inorganic polyphosphate/ATP-NAD kinase YP_001269038.1 4180225 R 351746 CDS YP_001269039.1 148548937 5192673 4181204..4182136 1 NC_009512.1 PFAM: Domain of unknown function DUF1853; hypothetical protein 4182136 5192673 Pput_3731 Pseudomonas putida F1 hypothetical protein YP_001269039.1 4181204 D 351746 CDS YP_001269040.1 148548938 5192674 4182299..4182844 1 NC_009512.1 PFAM: cytochrome B561; cytochrome B561 4182844 5192674 Pput_3732 Pseudomonas putida F1 cytochrome B561 YP_001269040.1 4182299 D 351746 CDS YP_001269041.1 148548939 5191870 complement(4182835..4183728) 1 NC_009512.1 1-aminocyclopropane-1-carboxylate deaminase 4183728 5191870 Pput_3733 Pseudomonas putida F1 1-aminocyclopropane-1-carboxylate deaminase YP_001269041.1 4182835 R 351746 CDS YP_001269042.1 148548940 5191871 complement(4183965..4186001) 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; NADH:flavin oxidoreductase 4186001 5191871 Pput_3734 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001269042.1 4183965 R 351746 CDS YP_001269043.1 148548941 5191354 complement(4186265..4187173) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator 4187173 5191354 Pput_3735 Pseudomonas putida F1 AraC-like transcriptional regulator YP_001269043.1 4186265 R 351746 CDS YP_001269044.1 148548942 5191355 complement(4187309..4187710) 1 NC_009512.1 hypothetical protein 4187710 5191355 Pput_3736 Pseudomonas putida F1 hypothetical protein YP_001269044.1 4187309 R 351746 CDS YP_001269045.1 148548943 5192157 complement(4187997..4188920) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4188920 5192157 Pput_3737 Pseudomonas putida F1 alcohol dehydrogenase YP_001269045.1 4187997 R 351746 CDS YP_001269046.1 148548944 5192158 4189432..4190169 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4190169 5192158 Pput_3738 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001269046.1 4189432 D 351746 CDS YP_001269047.1 148548945 5191541 4190199..4190453 1 NC_009512.1 hypothetical protein 4190453 5191541 Pput_3739 Pseudomonas putida F1 hypothetical protein YP_001269047.1 4190199 D 351746 CDS YP_001269048.1 148548946 5191542 4190666..4191571 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4191571 5191542 Pput_3740 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001269048.1 4190666 D 351746 CDS YP_001269049.1 148548947 5193709 complement(4191721..4191822) 1 NC_009512.1 hypothetical protein 4191822 5193709 Pput_3741 Pseudomonas putida F1 hypothetical protein YP_001269049.1 4191721 R 351746 CDS YP_001269050.1 148548948 5193710 complement(4191883..4192788) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4192788 5193710 Pput_3742 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269050.1 4191883 R 351746 CDS YP_001269051.1 148548949 5191799 4193086..4193850 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4193850 5191799 Pput_3743 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001269051.1 4193086 D 351746 CDS YP_001269052.1 148548950 5191800 4193882..4194169 1 NC_009512.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4194169 5191800 Pput_3744 Pseudomonas putida F1 antibiotic biosynthesis monooxygenase YP_001269052.1 4193882 D 351746 CDS YP_001269053.1 148548951 5191954 4194213..4195052 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4195052 5191954 Pput_3745 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001269053.1 4194213 D 351746 CDS YP_001269054.1 148548952 5191955 complement(4195182..4195526) 1 NC_009512.1 hypothetical protein 4195526 5191955 Pput_3746 Pseudomonas putida F1 hypothetical protein YP_001269054.1 4195182 R 351746 CDS YP_001269055.1 148548953 5192213 4195724..4196428 1 NC_009512.1 PFAM: pili assembly chaperone; pili assembly chaperone 4196428 5192213 Pput_3747 Pseudomonas putida F1 pili assembly chaperone YP_001269055.1 4195724 D 351746 CDS YP_001269056.1 148548954 5192214 4196454..4197443 1 NC_009512.1 hypothetical protein 4197443 5192214 Pput_3748 Pseudomonas putida F1 hypothetical protein YP_001269056.1 4196454 D 351746 CDS YP_001269057.1 148548955 5191843 4197514..4200321 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase 4200321 5191843 Pput_3749 Pseudomonas putida F1 histidine kinase YP_001269057.1 4197514 D 351746 CDS YP_001269058.1 148548956 5191844 4200318..4201511 1 NC_009512.1 PFAM: EAL domain protein; response regulator receiver; response regulator receiver modulated diguanylate phosphodiesterase 4201511 5191844 Pput_3750 Pseudomonas putida F1 response regulator receiver modulated diguanylate phosphodiesterase YP_001269058.1 4200318 D 351746 CDS YP_001269059.1 148548957 5192367 4201596..4204808 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 4204808 5192367 Pput_3751 Pseudomonas putida F1 multi-sensor hybrid histidine kinase YP_001269059.1 4201596 D 351746 CDS YP_001269060.1 148548958 5192368 4204878..4205525 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 4205525 5192368 Pput_3752 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001269060.1 4204878 D 351746 CDS YP_001269061.1 148548959 5191039 4205643..4206242 1 NC_009512.1 PFAM: Fimbrial protein-like; fimbrial protein-like protein 4206242 5191039 Pput_3753 Pseudomonas putida F1 fimbrial protein-like protein YP_001269061.1 4205643 D 351746 CDS YP_001269062.1 148548960 5191040 4206314..4207060 1 NC_009512.1 PFAM: pili assembly chaperone; pili assembly chaperone 4207060 5191040 Pput_3754 Pseudomonas putida F1 pili assembly chaperone YP_001269062.1 4206314 D 351746 CDS YP_001269063.1 148548961 5191246 4207144..4209699 1 NC_009512.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 4209699 5191246 Pput_3755 Pseudomonas putida F1 fimbrial biogenesis outer membrane usher protein YP_001269063.1 4207144 D 351746 CDS YP_001269064.1 148548962 5191247 4209872..4210990 1 NC_009512.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4210990 5191247 Pput_3756 Pseudomonas putida F1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001269064.1 4209872 D 351746 CDS YP_001269065.1 148548963 5190312 4210977..4212035 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4212035 5190312 Pput_3757 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001269065.1 4210977 D 351746 CDS YP_001269066.1 148548964 5190313 complement(4212326..4213150) 1 NC_009512.1 hypothetical protein 4213150 5190313 Pput_3758 Pseudomonas putida F1 hypothetical protein YP_001269066.1 4212326 R 351746 CDS YP_001269067.1 148548965 5195191 complement(4214182..4214955) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; oxidoreductase 4214955 5195191 Pput_3759 Pseudomonas putida F1 oxidoreductase YP_001269067.1 4214182 R 351746 CDS YP_001269068.1 148548966 5190502 complement(4214952..4216163) 1 NC_009512.1 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 4216163 5190502 Pput_3760 Pseudomonas putida F1 O-succinylhomoserine sulfhydrylase YP_001269068.1 4214952 R 351746 CDS YP_001269069.1 148548967 5192764 complement(4216180..4217685) 1 NC_009512.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 4217685 5192764 Pput_3761 Pseudomonas putida F1 amidophosphoribosyltransferase YP_001269069.1 4216180 R 351746 CDS YP_001269070.1 148548968 5192765 complement(4217728..4218285) 1 NC_009512.1 PFAM: Colicin V production protein; colicin V production protein 4218285 5192765 Pput_3762 Pseudomonas putida F1 colicin V production protein YP_001269070.1 4217728 R 351746 CDS YP_001269071.1 148548969 5190391 complement(4218483..4219127) 1 NC_009512.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 4219127 5190391 Pput_3763 Pseudomonas putida F1 sporulation domain-containing protein YP_001269071.1 4218483 R 351746 CDS YP_001269072.1 148548970 5190392 complement(4219111..4220418) 1 NC_009512.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase 4220418 5190392 Pput_3764 Pseudomonas putida F1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase YP_001269072.1 4219111 R 351746 CDS YP_001269073.1 148548971 5190282 complement(4220418..4221311) 1 NC_009512.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 4221311 5190282 Pput_3765 Pseudomonas putida F1 acetyl-CoA carboxylase subunit beta YP_001269073.1 4220418 R 351746 CDS YP_001269074.1 148548972 5190283 complement(4221532..4222152) 1 NC_009512.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 4222152 5190283 Pput_3766 Pseudomonas putida F1 N-(5'-phosphoribosyl)anthranilate isomerase YP_001269074.1 4221532 R 351746 CDS YP_001269075.1 148548973 5191645 complement(4222214..4223212) 1 NC_009512.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 4223212 truA 5191645 truA Pseudomonas putida F1 tRNA pseudouridine synthase A YP_001269075.1 4222214 R 351746 CDS YP_001269076.1 148548974 5191646 complement(4223212..4225947) 1 NC_009512.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 4225947 5191646 Pput_3768 Pseudomonas putida F1 peptidoglycan-binding LysM YP_001269076.1 4223212 R 351746 CDS YP_001269077.1 148548975 5192000 complement(4226019..4227023) 1 NC_009512.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 4227023 5192000 Pput_3769 Pseudomonas putida F1 aspartate-semialdehyde dehydrogenase YP_001269077.1 4226019 R 351746 CDS YP_001269078.1 148548976 5192001 complement(4228123..4229235) 1 NC_009512.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 4229235 5192001 Pput_3770 Pseudomonas putida F1 aspartate-semialdehyde dehydrogenase YP_001269078.1 4228123 R 351746 CDS YP_001269079.1 148548977 5193032 complement(4229299..4230381) 1 NC_009512.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4230381 5193032 Pput_3771 Pseudomonas putida F1 3-isopropylmalate dehydrogenase YP_001269079.1 4229299 R 351746 CDS YP_001269080.1 148548978 5193033 complement(4230436..4231200) 1 NC_009512.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 4231200 5193033 Pput_3772 Pseudomonas putida F1 type 11 methyltransferase YP_001269080.1 4230436 R 351746 CDS YP_001269081.1 148548979 5194039 complement(4231317..4231961) 1 NC_009512.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 4231961 leuD 5194039 leuD Pseudomonas putida F1 isopropylmalate isomerase small subunit YP_001269081.1 4231317 R 351746 CDS YP_001269082.1 148548980 5194040 complement(4231958..4233391) 1 NC_009512.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 4233391 5194040 Pput_3774 Pseudomonas putida F1 isopropylmalate isomerase large subunit YP_001269082.1 4231958 R 351746 CDS YP_001269083.1 148548981 5194346 4233523..4234401 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4234401 5194346 Pput_3775 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269083.1 4233523 D 351746 CDS YP_001269084.1 148548982 5194347 4234463..4237759 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 4237759 5194347 Pput_3776 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001269084.1 4234463 D 351746 CDS YP_001269085.1 148548983 5194201 complement(4237849..4238292) 1 NC_009512.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 4238292 5194201 Pput_3777 Pseudomonas putida F1 heat shock protein Hsp20 YP_001269085.1 4237849 R 351746 CDS YP_001269086.1 148548984 5194202 complement(4238295..4238807) 1 NC_009512.1 hypothetical protein 4238807 5194202 Pput_3778 Pseudomonas putida F1 hypothetical protein YP_001269086.1 4238295 R 351746 CDS YP_001269087.1 148548985 5194203 complement(4239173..4240144) 1 NC_009512.1 PFAM: dihydrouridine synthase, DuS; dihydrouridine synthase, DuS 4240144 5194203 Pput_3779 Pseudomonas putida F1 dihydrouridine synthase, DuS YP_001269087.1 4239173 R 351746 CDS YP_001269088.1 148548986 5194204 complement(4240196..4240630) 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 4240630 5194204 Pput_3780 Pseudomonas putida F1 thioesterase superfamily protein YP_001269088.1 4240196 R 351746 CDS YP_001269089.1 148548987 5194542 complement(4240734..4241612) 1 NC_009512.1 hypothetical protein 4241612 5194542 Pput_3781 Pseudomonas putida F1 hypothetical protein YP_001269089.1 4240734 R 351746 CDS YP_001269090.1 148548988 5194543 complement(4241628..4242167) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4242167 5194543 Pput_3782 Pseudomonas putida F1 TetR family transcriptional regulator YP_001269090.1 4241628 R 351746 CDS YP_001269091.1 148548989 5195269 complement(4243407..4244888) 1 NC_009512.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 4244888 gltX 5195269 gltX Pseudomonas putida F1 glutamyl-tRNA synthetase YP_001269091.1 4243407 R 351746 CDS YP_001269092.1 148548990 5195225 4244924..4246087 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4246087 5195225 Pput_3784 Pseudomonas putida F1 secretion protein HlyD family protein YP_001269092.1 4244924 D 351746 CDS YP_001269093.1 148548991 5195394 4246077..4247627 1 NC_009512.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4247627 5195394 Pput_3785 Pseudomonas putida F1 EmrB/QacA family drug resistance transporter YP_001269093.1 4246077 D 351746 CDS YP_001269094.1 148548992 5195395 complement(4247755..4249770) 1 NC_009512.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 4249770 5195395 Pput_3786 Pseudomonas putida F1 excinuclease ABC subunit B YP_001269094.1 4247755 R 351746 CDS YP_001269095.1 148548993 5195384 4250055..4251251 1 NC_009512.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4251251 5195384 Pput_3787 Pseudomonas putida F1 aromatic amino acid aminotransferase YP_001269095.1 4250055 D 351746 CDS YP_001269096.1 148548994 5194126 complement(4251448..4251849) 1 NC_009512.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 4251849 5194126 Pput_3788 Pseudomonas putida F1 cupin YP_001269096.1 4251448 R 351746 CDS YP_001269097.1 148548995 5195334 complement(4252188..4252745) 1 NC_009512.1 PFAM: protein of unknown function DUF1285; hypothetical protein 4252745 5195334 Pput_3789 Pseudomonas putida F1 hypothetical protein YP_001269097.1 4252188 R 351746 CDS YP_001269098.1 148548996 5195335 complement(4252756..4253361) 1 NC_009512.1 hypothetical protein 4253361 5195335 Pput_3790 Pseudomonas putida F1 hypothetical protein YP_001269098.1 4252756 R 351746 CDS YP_001269099.1 148548997 5194682 complement(4253428..4254396) 1 NC_009512.1 PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor synthesis domain-containing protein 4254396 5194682 Pput_3791 Pseudomonas putida F1 molybdenum cofactor synthesis domain-containing protein YP_001269099.1 4253428 R 351746 CDS YP_001269100.1 148548998 5194683 complement(4254653..4255288) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4255288 5194683 Pput_3792 Pseudomonas putida F1 TetR family transcriptional regulator YP_001269100.1 4254653 R 351746 CDS YP_001269101.1 148548999 5195352 complement(4256272..4257054) 1 NC_009512.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 4257054 5195352 Pput_3793 Pseudomonas putida F1 TatD family hydrolase YP_001269101.1 4256272 R 351746 CDS YP_001269102.1 148549000 5195353 complement(4257085..4258071) 1 NC_009512.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 4258071 5195353 Pput_3794 Pseudomonas putida F1 DNA polymerase III subunit delta' YP_001269102.1 4257085 R 351746 CDS YP_001269103.1 148549001 5195315 complement(4258064..4258696) 1 NC_009512.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 4258696 tmk 5195315 tmk Pseudomonas putida F1 thymidylate kinase YP_001269103.1 4258064 R 351746 CDS YP_001269104.1 148549002 5195316 complement(4258706..4259926) 1 NC_009512.1 PFAM: aminodeoxychorismate lyase; aminodeoxychorismate lyase 4259926 5195316 Pput_3796 Pseudomonas putida F1 aminodeoxychorismate lyase YP_001269104.1 4258706 R 351746 CDS YP_001269105.1 148549003 5194779 complement(4259931..4260746) 1 NC_009512.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 4260746 5194779 Pput_3797 Pseudomonas putida F1 4-amino-4-deoxychorismate lyase YP_001269105.1 4259931 R 351746 CDS YP_001269106.2 229328217 5194780 complement(4260746..4261990) 1 NC_009512.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 4261990 5194780 Pput_3798 Pseudomonas putida F1 3-oxoacyl-(acyl carrier protein) synthase II YP_001269106.2 4260746 R 351746 CDS YP_001269107.1 148549005 5194886 complement(4262178..4262414) 1 NC_009512.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 4262414 acpP 5194886 acpP Pseudomonas putida F1 acyl carrier protein YP_001269107.1 4262178 R 351746 CDS YP_001269108.1 148549006 5194887 complement(4262618..4263358) 1 NC_009512.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4263358 fabG 5194887 fabG Pseudomonas putida F1 3-ketoacyl-ACP reductase YP_001269108.1 4262618 R 351746 CDS YP_001269109.1 148549007 5194884 complement(4263374..4264312) 1 NC_009512.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 4264312 5194884 Pput_3801 Pseudomonas putida F1 malonyl CoA-acyl carrier protein transacylase YP_001269109.1 4263374 R 351746 CDS YP_001269110.1 148549008 5194885 complement(4264440..4265420) 1 NC_009512.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 4265420 5194885 Pput_3802 Pseudomonas putida F1 putative glycerol-3-phosphate acyltransferase PlsX YP_001269110.1 4264440 R 351746 CDS YP_001269111.1 148549009 5194640 complement(4265454..4265636) 1 NC_009512.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 4265636 rpmF 5194640 rpmF Pseudomonas putida F1 50S ribosomal protein L32 YP_001269111.1 4265454 R 351746 CDS YP_001269112.1 148549010 5194641 complement(4265650..4266177) 1 NC_009512.1 PFAM: protein of unknown function DUF177; hypothetical protein 4266177 5194641 Pput_3804 Pseudomonas putida F1 hypothetical protein YP_001269112.1 4265650 R 351746 CDS YP_001269113.1 148549011 5194592 4266274..4266852 1 NC_009512.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 4266852 5194592 Pput_3805 Pseudomonas putida F1 Maf-like protein YP_001269113.1 4266274 D 351746 CDS YP_001269114.1 148549012 5194593 complement(4267061..4268050) 1 NC_009512.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 4268050 5194593 Pput_3806 Pseudomonas putida F1 signal peptide peptidase SppA, 36K type YP_001269114.1 4267061 R 351746 CDS YP_001269115.1 148549013 5193625 complement(4268057..4268731) 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4268731 5193625 Pput_3807 Pseudomonas putida F1 HAD family hydrolase YP_001269115.1 4268057 R 351746 CDS YP_001269116.1 148549014 5193626 complement(4268735..4269736) 1 NC_009512.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 4269736 5193626 Pput_3808 Pseudomonas putida F1 RluA family pseudouridine synthase YP_001269116.1 4268735 R 351746 CDS YP_001269117.1 148549015 5190266 4270489..4273761 1 NC_009512.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease 4273761 5190266 Pput_3809 Pseudomonas putida F1 ribonuclease YP_001269117.1 4270489 D 351746 CDS YP_001269118.1 148549016 5190267 complement(4274181..4275200) 1 NC_009512.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4275200 murB 5190267 murB Pseudomonas putida F1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001269118.1 4274181 R 351746 CDS YP_001269119.1 148549017 5191181 complement(4275197..4275661) 1 NC_009512.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 4275661 5191181 Pput_3811 Pseudomonas putida F1 protein tyrosine phosphatase YP_001269119.1 4275197 R 351746 CDS YP_001269120.1 148549018 5191182 complement(4275661..4276425) 1 NC_009512.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 4276425 5191182 Pput_3812 Pseudomonas putida F1 3-deoxy-manno-octulosonate cytidylyltransferase YP_001269120.1 4275661 R 351746 CDS YP_001269121.1 148549019 5192505 complement(4276422..4276607) 1 NC_009512.1 PFAM: protein of unknown function DUF343; hypothetical protein 4276607 5192505 Pput_3813 Pseudomonas putida F1 hypothetical protein YP_001269121.1 4276422 R 351746 CDS YP_001269122.1 148549020 5192506 complement(4276652..4277653) 1 NC_009512.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 4277653 lpxK 5192506 lpxK Pseudomonas putida F1 tetraacyldisaccharide 4'-kinase YP_001269122.1 4276652 R 351746 CDS YP_001269123.1 148549021 5193237 complement(4277653..4278087) 1 NC_009512.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4278087 5193237 Pput_3815 Pseudomonas putida F1 biopolymer transport protein ExbD/TolR YP_001269123.1 4277653 R 351746 CDS YP_001269124.1 148549022 5193238 complement(4278084..4278758) 1 NC_009512.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4278758 5193238 Pput_3816 Pseudomonas putida F1 MotA/TolQ/ExbB proton channel YP_001269124.1 4278084 R 351746 CDS YP_001269125.1 148549023 5191876 complement(4278875..4281091) 1 NC_009512.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 4281091 5191876 Pput_3817 Pseudomonas putida F1 DNA internalization-related competence protein ComEC/Rec2 YP_001269125.1 4278875 R 351746 CDS YP_001269126.1 148549024 5191877 4281234..4281866 1 NC_009512.1 hypothetical protein 4281866 5191877 Pput_3818 Pseudomonas putida F1 hypothetical protein YP_001269126.1 4281234 D 351746 CDS YP_001269127.1 148549025 5191438 complement(4281750..4282529) 1 NC_009512.1 PFAM: ABC-2 type transporter; ABC transporter 4282529 5191438 Pput_3819 Pseudomonas putida F1 ABC transporter YP_001269127.1 4281750 R 351746 CDS YP_001269128.1 148549026 5191439 complement(4282526..4283458) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4283458 5191439 Pput_3820 Pseudomonas putida F1 ABC transporter-like protein YP_001269128.1 4282526 R 351746 CDS YP_001269129.1 148549027 5191414 complement(4283592..4284215) 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 4284215 5191414 Pput_3821 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001269129.1 4283592 R 351746 CDS YP_001269130.1 148549028 5191415 4284595..4287042 1 NC_009512.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 4287042 fadE 5191415 fadE Pseudomonas putida F1 acyl-CoA dehydrogenase YP_001269130.1 4284595 D 351746 CDS YP_001269131.1 148549029 5191282 4287122..4287526 1 NC_009512.1 hypothetical protein 4287526 5191282 Pput_3823 Pseudomonas putida F1 hypothetical protein YP_001269131.1 4287122 D 351746 CDS YP_001269132.1 148549030 5191283 4287605..4288231 1 NC_009512.1 PFAM: Fimbrial protein-like; fimbrial protein-like protein 4288231 5191283 Pput_3824 Pseudomonas putida F1 fimbrial protein-like protein YP_001269132.1 4287605 D 351746 CDS YP_001269133.1 148549031 5191059 4288287..4289024 1 NC_009512.1 PFAM: pili assembly chaperone; pili assembly chaperone 4289024 5191059 Pput_3825 Pseudomonas putida F1 pili assembly chaperone YP_001269133.1 4288287 D 351746 CDS YP_001269134.1 148549032 5191060 complement(4289039..4290496) 1 NC_009512.1 hypothetical protein 4290496 5191060 Pput_3826 Pseudomonas putida F1 hypothetical protein YP_001269134.1 4289039 R 351746 CDS YP_001269135.1 148549033 5192734 complement(4290568..4292763) 1 NC_009512.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Pertactin; Autotransporter beta- domain protein; outer membrane autotransporter 4292763 5192734 Pput_3827 Pseudomonas putida F1 outer membrane autotransporter YP_001269135.1 4290568 R 351746 CDS YP_001269136.1 148549034 5192735 complement(4292924..4294933) 1 NC_009512.1 hypothetical protein 4294933 5192735 Pput_3828 Pseudomonas putida F1 hypothetical protein YP_001269136.1 4292924 R 351746 CDS YP_001269137.1 148549035 5190673 complement(4295234..4299079) 1 NC_009512.1 PFAM: YD repeat-containing protein; YD repeat-/RHS repeat-containing protein 4299079 5190673 Pput_3829 Pseudomonas putida F1 YD repeat-/RHS repeat-containing protein YP_001269137.1 4295234 R 351746 CDS YP_001269138.1 148549036 5190674 complement(4299135..4301966) 1 NC_009512.1 hypothetical protein 4301966 5190674 Pput_3830 Pseudomonas putida F1 hypothetical protein YP_001269138.1 4299135 R 351746 CDS YP_001269139.1 148549037 5193948 complement(4301969..4304404) 1 NC_009512.1 hypothetical protein 4304404 5193948 Pput_3831 Pseudomonas putida F1 hypothetical protein YP_001269139.1 4301969 R 351746 CDS YP_001269140.1 148549038 5193949 complement(4304578..4306386) 1 NC_009512.1 hypothetical protein 4306386 5193949 Pput_3832 Pseudomonas putida F1 hypothetical protein YP_001269140.1 4304578 R 351746 CDS YP_001269141.1 148549039 5190499 4306744..4307151 1 NC_009512.1 hypothetical protein 4307151 5190499 Pput_3833 Pseudomonas putida F1 hypothetical protein YP_001269141.1 4306744 D 351746 CDS YP_001269142.1 148549040 5190500 4307156..4312327 1 NC_009512.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; YD repeat-containing protein 4312327 5190500 Pput_3834 Pseudomonas putida F1 YD repeat-containing protein YP_001269142.1 4307156 D 351746 CDS YP_001269143.1 148549041 5190909 4312598..4315171 1 NC_009512.1 PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 4315171 5190909 Pput_3835 Pseudomonas putida F1 fimbrial biogenesis outer membrane usher protein YP_001269143.1 4312598 D 351746 CDS YP_001269144.1 148549042 5190910 4315171..4316259 1 NC_009512.1 PFAM: Fimbrial protein-like; fimbrial protein-like protein 4316259 5190910 Pput_3836 Pseudomonas putida F1 fimbrial protein-like protein YP_001269144.1 4315171 D 351746 CDS YP_001269145.1 148549043 5193209 4317181..4318023 1 NC_009512.1 hypothetical protein 4318023 5193209 Pput_3837 Pseudomonas putida F1 hypothetical protein YP_001269145.1 4317181 D 351746 CDS YP_001269146.1 148549044 5195367 complement(4318099..4318581) 1 NC_009512.1 GAF domain-containing protein 4318581 5195367 Pput_3838 Pseudomonas putida F1 GAF domain-containing protein YP_001269146.1 4318099 R 351746 CDS YP_001269147.1 148549045 5194409 complement(4318582..4319469) 1 NC_009512.1 PFAM: protein of unknown function DUF815; hypothetical protein 4319469 5194409 Pput_3839 Pseudomonas putida F1 hypothetical protein YP_001269147.1 4318582 R 351746 CDS YP_001269148.1 148549046 5194410 4319674..4322031 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase 4322031 5194410 Pput_3840 Pseudomonas putida F1 histidine kinase YP_001269148.1 4319674 D 351746 CDS YP_001269149.1 148549047 5192629 complement(4322021..4322509) 1 NC_009512.1 PFAM: glutathione peroxidase; glutathione peroxidase 4322509 5192629 Pput_3841 Pseudomonas putida F1 glutathione peroxidase YP_001269149.1 4322021 R 351746 CDS YP_001269150.1 148549048 5192630 complement(4322523..4322918) 1 NC_009512.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 4322918 5192630 Pput_3842 Pseudomonas putida F1 methionine sulfoxide reductase B YP_001269150.1 4322523 R 351746 CDS YP_001269151.1 148549049 5191847 4323086..4324297 1 NC_009512.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 4324297 5191847 Pput_3843 Pseudomonas putida F1 aminotransferase AlaT YP_001269151.1 4323086 D 351746 CDS YP_001269152.1 148549050 5191848 4324590..4325477 1 NC_009512.1 putative metalloprotease; heat shock protein HtpX 4325477 5191848 Pput_3844 Pseudomonas putida F1 heat shock protein HtpX YP_001269152.1 4324590 D 351746 CDS YP_001269153.1 148549051 5191324 complement(4325654..4326304) 1 NC_009512.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 4326304 5191324 Pput_3845 Pseudomonas putida F1 thiopurine S-methyltransferase YP_001269153.1 4325654 R 351746 CDS YP_001269154.1 148549052 5191325 4326406..4327173 1 NC_009512.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 4327173 5191325 Pput_3846 Pseudomonas putida F1 extradiol ring-cleavage dioxygenase III subunit B YP_001269154.1 4326406 D 351746 CDS YP_001269155.1 148549053 5190760 complement(4327315..4328994) 1 NC_009512.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 4328994 5190760 Pput_3847 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001269155.1 4327315 R 351746 CDS YP_001269156.1 148549054 5190761 complement(4329346..4330131) 1 NC_009512.1 hypothetical protein 4330131 5190761 Pput_3848 Pseudomonas putida F1 hypothetical protein YP_001269156.1 4329346 R 351746 CDS YP_001269157.1 148549055 5193256 4330217..4331563 1 NC_009512.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 4331563 5193256 Pput_3849 Pseudomonas putida F1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001269157.1 4330217 D 351746 CDS YP_001269158.1 148549056 5193257 complement(4332942..4333160) 1 NC_009512.1 PFAM: protein of unknown function DUF1127; hypothetical protein 4333160 5193257 Pput_3850 Pseudomonas putida F1 hypothetical protein YP_001269158.1 4332942 R 351746 CDS YP_001269159.1 148549057 5194520 4333257..4334108 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4334108 5194520 Pput_3851 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269159.1 4333257 D 351746 CDS YP_001269160.1 148549058 5194521 complement(4334137..4334922) 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 4334922 5194521 Pput_3852 Pseudomonas putida F1 hypothetical protein YP_001269160.1 4334137 R 351746 CDS YP_001269161.1 148549059 5195249 4335000..4335953 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4335953 5195249 Pput_3853 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269161.1 4335000 D 351746 CDS YP_001269162.1 148549060 5195250 4336012..4336467 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 4336467 5195250 Pput_3854 Pseudomonas putida F1 MarR family transcriptional regulator YP_001269162.1 4336012 D 351746 CDS YP_001269163.1 148549061 5195086 4336608..4337036 1 NC_009512.1 PFAM: OsmC family protein; OsmC family protein 4337036 5195086 Pput_3855 Pseudomonas putida F1 OsmC family protein YP_001269163.1 4336608 D 351746 CDS YP_001269164.1 148549062 5195087 complement(4337270..4337839) 1 NC_009512.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4337839 5195087 Pput_3856 Pseudomonas putida F1 elongation factor P YP_001269164.1 4337270 R 351746 CDS YP_001269165.1 148549063 5194434 complement(4337888..4339021) 1 NC_009512.1 hypothetical protein 4339021 5194434 Pput_3857 Pseudomonas putida F1 hypothetical protein YP_001269165.1 4337888 R 351746 CDS YP_001269166.1 148549064 5194435 4339255..4340031 1 NC_009512.1 GreA/GreB family elongation factor 4340031 5194435 Pput_3858 Pseudomonas putida F1 GreA/GreB family elongation factor YP_001269166.1 4339255 D 351746 CDS YP_001269167.1 148549065 5194111 complement(4340146..4341084) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4341084 5194111 Pput_3859 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269167.1 4340146 R 351746 CDS YP_001269168.1 148549066 5194112 4341203..4341952 1 NC_009512.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4341952 fabG 5194112 fabG Pseudomonas putida F1 3-ketoacyl-ACP reductase YP_001269168.1 4341203 D 351746 CDS YP_001269169.1 148549067 5192261 complement(4341991..4342875) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4342875 5192261 Pput_3861 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269169.1 4341991 R 351746 CDS YP_001269170.1 148549068 5192262 4342982..4344169 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4344169 5192262 Pput_3862 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269170.1 4342982 D 351746 CDS YP_001269171.1 148549069 5191993 4344385..4344765 1 NC_009512.1 hypothetical protein 4344765 5191993 Pput_3863 Pseudomonas putida F1 hypothetical protein YP_001269171.1 4344385 D 351746 CDS YP_001269172.1 148549070 5191994 4345070..4347202 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4347202 5191994 Pput_3864 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001269172.1 4345070 D 351746 CDS YP_001269173.1 148549071 5191378 4347980..4348669 1 NC_009512.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4348669 5191378 Pput_3865 Pseudomonas putida F1 enoyl-CoA hydratase YP_001269173.1 4347980 D 351746 CDS YP_001269174.1 148549072 5193259 4348789..4349502 1 NC_009512.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 4349502 5193259 Pput_3866 Pseudomonas putida F1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001269174.1 4348789 D 351746 CDS YP_001269175.1 148549073 5190718 4349571..4350542 1 NC_009512.1 PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein 4350542 5190718 Pput_3867 Pseudomonas putida F1 CorA family protein Mg2+ transporter protein YP_001269175.1 4349571 D 351746 CDS YP_001269176.1 148549074 5190719 complement(4350583..4351317) 1 NC_009512.1 PFAM: glutamine amidotransferase class-I; amidotransferase 4351317 5190719 Pput_3868 Pseudomonas putida F1 amidotransferase YP_001269176.1 4350583 R 351746 CDS YP_001269177.1 148549075 5194000 4351844..4352644 1 NC_009512.1 hypothetical protein 4352644 5194000 Pput_3869 Pseudomonas putida F1 hypothetical protein YP_001269177.1 4351844 D 351746 CDS YP_001269178.1 148549076 5194001 complement(4352909..4353241) 1 NC_009512.1 PFAM: protein of unknown function DUF1260; hypothetical protein 4353241 5194001 Pput_3870 Pseudomonas putida F1 hypothetical protein YP_001269178.1 4352909 R 351746 CDS YP_001269179.1 148549077 5193124 complement(4353416..4353652) 1 NC_009512.1 hypothetical protein 4353652 5193124 Pput_3871 Pseudomonas putida F1 hypothetical protein YP_001269179.1 4353416 R 351746 CDS YP_001269180.1 148549078 5193125 complement(4353859..4355916) 1 NC_009512.1 PFAM: sulfatase; sulfatase 4355916 5193125 Pput_3872 Pseudomonas putida F1 sulfatase YP_001269180.1 4353859 R 351746 CDS YP_001269181.1 148549079 5193850 complement(4356056..4356247) 1 NC_009512.1 hypothetical protein 4356247 5193850 Pput_3873 Pseudomonas putida F1 hypothetical protein YP_001269181.1 4356056 R 351746 CDS YP_001269182.1 148549080 5193851 4356374..4357312 1 NC_009512.1 PFAM: zinc/iron permease; zinc/iron permease 4357312 5193851 Pput_3874 Pseudomonas putida F1 zinc/iron permease YP_001269182.1 4356374 D 351746 CDS YP_001269183.1 148549081 5193286 complement(4357576..4358106) 1 NC_009512.1 hypothetical protein 4358106 5193286 Pput_3875 Pseudomonas putida F1 hypothetical protein YP_001269183.1 4357576 R 351746 CDS YP_001269184.1 148549082 5193287 complement(4358167..4358691) 1 NC_009512.1 PFAM: Ankyrin; ankyrin 4358691 5193287 Pput_3876 Pseudomonas putida F1 ankyrin YP_001269184.1 4358167 R 351746 CDS YP_001269185.1 148549083 5195543 4358958..4359230 1 NC_009512.1 hypothetical protein 4359230 5195543 Pput_3877 Pseudomonas putida F1 hypothetical protein YP_001269185.1 4358958 D 351746 CDS YP_001269186.1 148549084 5195544 complement(4359354..4359890) 1 NC_009512.1 hypothetical protein 4359890 5195544 Pput_3878 Pseudomonas putida F1 hypothetical protein YP_001269186.1 4359354 R 351746 CDS YP_001269187.1 148549085 5190491 complement(4359890..4361044) 1 NC_009512.1 PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 4361044 5190491 Pput_3879 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269187.1 4359890 R 351746 CDS YP_001269188.1 148549086 5190492 complement(4361208..4362299) 1 NC_009512.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 4362299 5190492 Pput_3880 Pseudomonas putida F1 chorismate synthase YP_001269188.1 4361208 R 351746 CDS YP_001269189.1 148549087 5193612 4362539..4363501 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4363501 5193612 Pput_3881 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001269189.1 4362539 D 351746 CDS YP_001269190.1 148549088 5193613 4363567..4364349 1 NC_009512.1 hypothetical protein 4364349 5193613 Pput_3882 Pseudomonas putida F1 hypothetical protein YP_001269190.1 4363567 D 351746 CDS YP_001269191.1 148549089 5193860 4364622..4365572 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 4365572 5193860 Pput_3883 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001269191.1 4364622 D 351746 CDS YP_001269192.1 148549090 5193861 complement(4365789..4366697) 1 NC_009512.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 4366697 5193861 Pput_3884 Pseudomonas putida F1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001269192.1 4365789 R 351746 CDS YP_001269193.1 148549091 5192578 4366879..4367469 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 4367469 5192578 Pput_3885 Pseudomonas putida F1 isochorismatase hydrolase YP_001269193.1 4366879 D 351746 CDS YP_001269194.1 148549092 5192579 4367555..4367875 1 NC_009512.1 hypothetical protein 4367875 5192579 Pput_3886 Pseudomonas putida F1 hypothetical protein YP_001269194.1 4367555 D 351746 CDS YP_001269195.1 148549093 5191135 4368439..4368999 1 NC_009512.1 PFAM: Smr protein/MutS2; Smr protein/MutS2 4368999 5191135 Pput_3887 Pseudomonas putida F1 Smr protein/MutS2 YP_001269195.1 4368439 D 351746 CDS YP_001269196.1 148549094 5191136 4369070..4369615 1 NC_009512.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4369615 folE 5191136 folE Pseudomonas putida F1 GTP cyclohydrolase I YP_001269196.1 4369070 D 351746 CDS YP_001269197.1 148549095 5192895 4369675..4370046 1 NC_009512.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; glutaredoxin 4370046 5192895 Pput_3889 Pseudomonas putida F1 glutaredoxin YP_001269197.1 4369675 D 351746 CDS YP_001269198.1 148549096 5192896 complement(4370185..4370787) 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 4370787 5192896 Pput_3890 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001269198.1 4370185 R 351746 CDS YP_001269199.1 148549097 5194045 4370932..4372122 1 NC_009512.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; benzoate transporter 4372122 5194045 Pput_3891 Pseudomonas putida F1 benzoate transporter YP_001269199.1 4370932 D 351746 CDS YP_001269200.1 148549098 5194046 complement(4372219..4374159) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4374159 5194046 Pput_3892 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001269200.1 4372219 R 351746 CDS YP_001269201.1 148549099 5194534 4374565..4375308 1 NC_009512.1 hypothetical protein 4375308 5194534 Pput_3893 Pseudomonas putida F1 hypothetical protein YP_001269201.1 4374565 D 351746 CDS YP_001269202.1 148549100 5194535 complement(4375452..4376213) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 4376213 5194535 Pput_3894 Pseudomonas putida F1 short chain dehydrogenase YP_001269202.1 4375452 R 351746 CDS YP_001269203.1 148549101 5192996 4376391..4377392 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4377392 5192996 Pput_3895 Pseudomonas putida F1 alcohol dehydrogenase YP_001269203.1 4376391 D 351746 CDS YP_001269204.1 148549102 5192997 complement(4377763..4378464) 1 NC_009512.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4378464 5192997 Pput_3896 Pseudomonas putida F1 orotidine 5'-phosphate decarboxylase YP_001269204.1 4377763 R 351746 CDS YP_001269205.1 148549103 5191849 4378648..4378815 1 NC_009512.1 hypothetical protein 4378815 5191849 Pput_3897 Pseudomonas putida F1 hypothetical protein YP_001269205.1 4378648 D 351746 CDS YP_001269206.1 148549104 5191850 complement(4378908..4379243) 1 NC_009512.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; helix-hairpin-helix repeat-containing competence protein ComEA 4379243 5191850 Pput_3898 Pseudomonas putida F1 helix-hairpin-helix repeat-containing competence protein ComEA YP_001269206.1 4378908 R 351746 CDS YP_001269207.1 148549105 5194116 4380047..4380322 1 NC_009512.1 hypothetical protein 4380322 5194116 Pput_3899 Pseudomonas putida F1 hypothetical protein YP_001269207.1 4380047 D 351746 CDS YP_001269208.1 148549106 5194117 complement(4380521..4381351) 1 NC_009512.1 hypothetical protein 4381351 5194117 Pput_3900 Pseudomonas putida F1 hypothetical protein YP_001269208.1 4380521 R 351746 CDS YP_001269209.1 148549107 5192667 complement(4381647..4382237) 1 NC_009512.1 PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 4382237 5192667 Pput_3901 Pseudomonas putida F1 hexapaptide repeat-containing transferase YP_001269209.1 4381647 R 351746 CDS YP_001269210.1 148549108 5192668 4383205..4383891 1 NC_009512.1 PFAM: ABC-2 type transporter; ABC transporter 4383891 5192668 Pput_3902 Pseudomonas putida F1 ABC transporter YP_001269210.1 4383205 D 351746 CDS YP_001269211.1 148549109 5194982 4383905..4384558 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4384558 5194982 Pput_3903 Pseudomonas putida F1 ABC transporter-like protein YP_001269211.1 4383905 D 351746 CDS YP_001269212.1 148549110 5194983 4384613..4385719 1 NC_009512.1 PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 4385719 5194983 Pput_3904 Pseudomonas putida F1 lipopolysaccharide biosynthesis protein YP_001269212.1 4384613 D 351746 CDS YP_001269213.1 148549111 5195418 4385739..4386803 1 NC_009512.1 PFAM: polysaccharide export protein; polysaccharide export protein 4386803 5195418 Pput_3905 Pseudomonas putida F1 polysaccharide export protein YP_001269213.1 4385739 D 351746 CDS YP_001269214.1 148549112 5195419 4386920..4389424 1 NC_009512.1 PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; Capsule polysaccharide biosynthesis protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; capsule polysaccharide biosynthesis protein 4389424 5195419 Pput_3906 Pseudomonas putida F1 capsule polysaccharide biosynthesis protein YP_001269214.1 4386920 D 351746 CDS YP_001269215.1 148549113 5191751 4389826..4390836 1 NC_009512.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; UDP-glucose 4-epimerase 4390836 5191751 Pput_3907 Pseudomonas putida F1 UDP-glucose 4-epimerase YP_001269215.1 4389826 D 351746 CDS YP_001269216.1 148549114 5191752 4390886..4391728 1 NC_009512.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 4391728 5191752 Pput_3908 Pseudomonas putida F1 2-dehydro-3-deoxyphosphooctonate aldolase YP_001269216.1 4390886 D 351746 CDS YP_001269217.1 148549115 5192417 4391758..4393044 1 NC_009512.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 4393044 5192417 Pput_3909 Pseudomonas putida F1 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_001269217.1 4391758 D 351746 CDS YP_001269218.1 148549116 5192418 complement(4393090..4394022) 1 NC_009512.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4394022 5192418 Pput_3910 Pseudomonas putida F1 KpsF/GutQ family protein YP_001269218.1 4393090 R 351746 CDS YP_001269219.1 148549117 5191651 4394664..4395722 1 NC_009512.1 hypothetical protein 4395722 5191651 Pput_3911 Pseudomonas putida F1 hypothetical protein YP_001269219.1 4394664 D 351746 CDS YP_001269220.1 148549118 5191652 4396024..4398045 1 NC_009512.1 PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4398045 5191652 Pput_3912 Pseudomonas putida F1 capsule polysaccharide biosynthesis protein YP_001269220.1 4396024 D 351746 CDS YP_001269221.1 148549119 5191880 4397985..4399304 1 NC_009512.1 PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4399304 5191880 Pput_3913 Pseudomonas putida F1 capsule polysaccharide biosynthesis protein YP_001269221.1 4397985 D 351746 CDS YP_001269222.1 148549120 5191881 4399301..4400077 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4400077 5191881 Pput_3914 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001269222.1 4399301 D 351746 CDS YP_001269223.1 148549121 5190896 4400085..4401632 1 NC_009512.1 PFAM: sulfatase; sulfatase 4401632 5190896 Pput_3915 Pseudomonas putida F1 sulfatase YP_001269223.1 4400085 D 351746 CDS YP_001269224.1 148549122 5190897 4401637..4402203 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4402203 5190897 Pput_3916 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001269224.1 4401637 D 351746 CDS YP_001269225.1 148549123 5190220 4402203..4404347 1 NC_009512.1 PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4404347 5190220 Pput_3917 Pseudomonas putida F1 capsule polysaccharide biosynthesis protein YP_001269225.1 4402203 D 351746 CDS YP_001269226.1 148549124 5190221 4404351..4405394 1 NC_009512.1 PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 4405394 5190221 Pput_3918 Pseudomonas putida F1 phytanoyl-CoA dioxygenase YP_001269226.1 4404351 D 351746 CDS YP_001269227.1 148549125 5192386 4406498..4406953 1 NC_009512.1 hypothetical protein 4406953 5192386 Pput_3919 Pseudomonas putida F1 hypothetical protein YP_001269227.1 4406498 D 351746 CDS YP_001269228.1 148549126 5192387 complement(4406963..4408315) 1 NC_009512.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aminotransferase, class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase 4408315 5192387 Pput_3920 Pseudomonas putida F1 8-amino-7-oxononanoate synthase YP_001269228.1 4406963 R 351746 CDS YP_001269229.1 148549127 5193544 complement(4408325..4415824) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR; Beta-ketoacyl synthase-like; Acyl transferase; beta-ketoacyl synthase-like protein 4415824 5193544 Pput_3921 Pseudomonas putida F1 beta-ketoacyl synthase-like protein YP_001269229.1 4408325 R 351746 CDS YP_001269230.1 148549128 5193545 4416478..4417404 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4417404 5193545 Pput_3922 Pseudomonas putida F1 glycosyl transferase family protein YP_001269230.1 4416478 D 351746 CDS YP_001269231.1 148549129 5195356 4417908..4418453 1 NC_009512.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 4418453 5195356 Pput_3923 Pseudomonas putida F1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001269231.1 4417908 D 351746 CDS YP_001269232.1 148549130 5195357 4418453..4419280 1 NC_009512.1 PFAM: ABC-2 type transporter; ABC transporter 4419280 5195357 Pput_3924 Pseudomonas putida F1 ABC transporter YP_001269232.1 4418453 D 351746 CDS YP_001269233.1 148549131 5193895 4419270..4420619 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4420619 5193895 Pput_3925 Pseudomonas putida F1 ABC transporter-like protein YP_001269233.1 4419270 D 351746 CDS YP_001269234.1 148549132 5193896 4420626..4425155 1 NC_009512.1 PFAM: glycosyl transferase, family 2; Methyltransferase type 11; Methyltransferase type 12; glycosyl transferase family protein 4425155 5193896 Pput_3926 Pseudomonas putida F1 glycosyl transferase family protein YP_001269234.1 4420626 D 351746 CDS YP_001269235.1 148549133 5195348 4425174..4427303 1 NC_009512.1 hypothetical protein 4427303 5195348 Pput_3927 Pseudomonas putida F1 hypothetical protein YP_001269235.1 4425174 D 351746 CDS YP_001269236.1 148549134 5195349 4427318..4428427 1 NC_009512.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase 4428427 5195349 Pput_3928 Pseudomonas putida F1 DegT/DnrJ/EryC1/StrS aminotransferase YP_001269236.1 4427318 D 351746 CDS YP_001269237.1 148549135 5195392 4428430..4429371 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4429371 5195392 Pput_3929 Pseudomonas putida F1 glycosyl transferase family protein YP_001269237.1 4428430 D 351746 CDS YP_001269238.1 148549136 5195393 4429361..4430314 1 NC_009512.1 PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; WxcM domain-containing protein 4430314 5195393 Pput_3930 Pseudomonas putida F1 WxcM domain-containing protein YP_001269238.1 4429361 D 351746 CDS YP_001269239.1 148549137 5193651 4430319..4430708 1 NC_009512.1 PFAM: GtrA family protein; GtrA family protein 4430708 5193651 Pput_3931 Pseudomonas putida F1 GtrA family protein YP_001269239.1 4430319 D 351746 CDS YP_001269240.1 148549138 5193652 complement(4430922..4431842) 1 NC_009512.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4431842 5193652 Pput_3932 Pseudomonas putida F1 glycosyl transferase family protein YP_001269240.1 4430922 R 351746 CDS YP_001269241.1 148549139 5193687 complement(4431879..4432769) 1 NC_009512.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 4432769 5193687 Pput_3933 Pseudomonas putida F1 glucose-1-phosphate thymidylyltransferase YP_001269241.1 4431879 R 351746 CDS YP_001269242.1 148549140 5193688 complement(4432766..4433671) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase 4433671 5193688 Pput_3934 Pseudomonas putida F1 dTDP-4-dehydrorhamnose reductase YP_001269242.1 4432766 R 351746 CDS YP_001269243.1 148549141 5194919 complement(4433668..4434744) 1 NC_009512.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase 4434744 5194919 Pput_3935 Pseudomonas putida F1 dTDP-glucose 4,6-dehydratase YP_001269243.1 4433668 R 351746 CDS YP_001269244.1 148549142 5194920 complement(4435005..4437017) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; polysaccharide biosynthesis protein CapD 4437017 5194920 Pput_3936 Pseudomonas putida F1 polysaccharide biosynthesis protein CapD YP_001269244.1 4435005 R 351746 CDS YP_001269245.1 148549143 5190296 complement(4437101..4438243) 1 NC_009512.1 PFAM: glycosyl transferase, family 4; glycosyl transferase family protein 4438243 5190296 Pput_3937 Pseudomonas putida F1 glycosyl transferase family protein YP_001269245.1 4437101 R 351746 CDS YP_001269246.1 148549144 5190297 complement(4438328..4439272) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 4439272 5190297 Pput_3938 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001269246.1 4438328 R 351746 CDS YP_001269247.1 148549145 5190330 complement(4439407..4440837) 1 NC_009512.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 4440837 5190330 Pput_3939 Pseudomonas putida F1 beta-lactamase domain-containing protein YP_001269247.1 4439407 R 351746 CDS YP_001269248.1 148549146 5190331 complement(4440940..4441203) 1 NC_009512.1 hypothetical protein 4441203 5190331 Pput_3940 Pseudomonas putida F1 hypothetical protein YP_001269248.1 4440940 R 351746 CDS YP_001269249.1 148549147 5194686 complement(4441225..4441521) 1 NC_009512.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 4441521 ihfB 5194686 ihfB Pseudomonas putida F1 integration host factor subunit beta YP_001269249.1 4441225 R 351746 CDS YP_001269250.1 148549148 5194687 complement(4442129..4443805) 1 NC_009512.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 4443805 rpsA 5194687 rpsA Pseudomonas putida F1 30S ribosomal protein S1 YP_001269250.1 4442129 R 351746 CDS YP_001269251.1 148549149 5190679 complement(4443930..4444607) 1 NC_009512.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 4444607 cmk 5190679 cmk Pseudomonas putida F1 cytidylate kinase YP_001269251.1 4443930 R 351746 CDS YP_001269252.1 148549150 5190680 complement(4444613..4446853) 1 NC_009512.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 4446853 5190680 Pput_3944 Pseudomonas putida F1 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase YP_001269252.1 4444613 R 351746 CDS YP_001269253.1 148549151 5191797 complement(4447012..4448106) 1 NC_009512.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; chorismate mutase 4448106 5191797 Pput_3945 Pseudomonas putida F1 chorismate mutase YP_001269253.1 4447012 R 351746 CDS YP_001269254.1 148549152 5191798 complement(4448108..4449295) 1 NC_009512.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 4449295 5191798 Pput_3946 Pseudomonas putida F1 phosphoserine aminotransferase YP_001269254.1 4448108 R 351746 CDS YP_001269255.1 148549153 5190584 complement(4449408..4452167) 1 NC_009512.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 4452167 5190584 Pput_3947 Pseudomonas putida F1 DNA gyrase subunit A YP_001269255.1 4449408 R 351746 CDS YP_001269256.1 148549154 5190585 complement(4452530..4453606) 1 NC_009512.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 4453606 mtnA 5190585 mtnA Pseudomonas putida F1 methylthioribose-1-phosphate isomerase YP_001269256.1 4452530 R 351746 CDS YP_001269257.1 148549155 5190574 4453717..4454415 1 NC_009512.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 4454415 5190574 Pput_3949 Pseudomonas putida F1 3-demethylubiquinone-9 3-methyltransferase YP_001269257.1 4453717 D 351746 CDS YP_001269258.1 148549156 5190575 4454418..4455089 1 NC_009512.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 4455089 5190575 Pput_3950 Pseudomonas putida F1 phosphoglycolate phosphatase YP_001269258.1 4454418 D 351746 CDS YP_001269259.1 148549157 5192018 4455187..4455927 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4455927 5192018 Pput_3951 Pseudomonas putida F1 short chain dehydrogenase YP_001269259.1 4455187 D 351746 CDS YP_001269260.1 148549158 5192019 complement(4456046..4456861) 1 NC_009512.1 hypothetical protein 4456861 5192019 Pput_3952 Pseudomonas putida F1 hypothetical protein YP_001269260.1 4456046 R 351746 CDS YP_001269261.1 148549159 5192935 complement(4456862..4459318) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 4459318 5192935 Pput_3953 Pseudomonas putida F1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001269261.1 4456862 R 351746 CDS YP_001269262.1 148549160 5192936 complement(4459607..4461439) 1 NC_009512.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4461439 5192936 Pput_3954 Pseudomonas putida F1 ABC transporter-like protein YP_001269262.1 4459607 R 351746 CDS YP_001269263.1 148549161 5194676 complement(4461432..4462064) 1 NC_009512.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 4462064 5194676 Pput_3955 Pseudomonas putida F1 DSBA oxidoreductase YP_001269263.1 4461432 R 351746 CDS YP_001269264.1 148549162 5194677 complement(4462068..4463000) 1 NC_009512.1 PFAM: Rhodanese domain protein; hypothetical protein 4463000 5194677 Pput_3956 Pseudomonas putida F1 hypothetical protein YP_001269264.1 4462068 R 351746 CDS YP_001269265.1 148549163 5190411 complement(4463228..4463524) 1 NC_009512.1 PFAM: BolA family protein; BolA family protein 4463524 5190411 Pput_3957 Pseudomonas putida F1 BolA family protein YP_001269265.1 4463228 R 351746 CDS YP_001269266.1 148549164 5190412 complement(4463535..4464059) 1 NC_009512.1 hypothetical protein 4464059 5190412 Pput_3958 Pseudomonas putida F1 hypothetical protein YP_001269266.1 4463535 R 351746 CDS YP_001269267.1 148549165 5190834 4464214..4465608 1 NC_009512.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 4465608 5190834 Pput_3959 Pseudomonas putida F1 fumarate hydratase YP_001269267.1 4464214 D 351746 CDS YP_001269268.1 148549166 5190835 complement(4465705..4466922) 1 NC_009512.1 hypothetical protein 4466922 5190835 Pput_3960 Pseudomonas putida F1 hypothetical protein YP_001269268.1 4465705 R 351746 CDS YP_001269269.1 148549167 5194913 complement(4466940..4467914) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 4467914 5194913 Pput_3961 Pseudomonas putida F1 hypothetical protein YP_001269269.1 4466940 R 351746 CDS YP_001269270.1 148549168 5194914 complement(4468151..4469644) 1 NC_009512.1 PFAM: protein of unknown function DUF344; hypothetical protein 4469644 5194914 Pput_3962 Pseudomonas putida F1 hypothetical protein YP_001269270.1 4468151 R 351746 CDS YP_001269271.1 148549169 5190956 4469781..4471745 1 NC_009512.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 4471745 mnmC 5190956 mnmC Pseudomonas putida F1 5-methylaminomethyl-2-thiouridine methyltransferase YP_001269271.1 4469781 D 351746 CDS YP_001269272.1 148549170 5190957 4471876..4473663 1 NC_009512.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 4473663 5190957 Pput_3964 Pseudomonas putida F1 asparagine synthase YP_001269272.1 4471876 D 351746 CDS YP_001269273.1 148549171 5191170 4473667..4475412 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; glutathione synthase 4475412 5191170 Pput_3965 Pseudomonas putida F1 glutathione synthase YP_001269273.1 4473667 D 351746 CDS YP_001269274.1 148549172 5191171 4475583..4476767 1 NC_009512.1 PFAM: peptidase M20; peptidase M42 family protein; peptidase M42 family protein 4476767 5191171 Pput_3966 Pseudomonas putida F1 peptidase M42 family protein YP_001269274.1 4475583 D 351746 CDS YP_001269275.1 148549173 5191934 4476851..4477078 1 NC_009512.1 PFAM: protein of unknown function UPF0270; hypothetical protein 4477078 5191934 Pput_3967 Pseudomonas putida F1 hypothetical protein YP_001269275.1 4476851 D 351746 CDS YP_001269276.1 148549174 5191935 complement(4477093..4477272) 1 NC_009512.1 PFAM: carbon storage regulator; carbon storage regulator CsrA 4477272 5191935 Pput_3968 Pseudomonas putida F1 carbon storage regulator CsrA YP_001269276.1 4477093 R 351746 CDS YP_001269277.1 148549175 5194236 complement(4477393..4478202) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 4478202 5194236 Pput_3969 Pseudomonas putida F1 short chain dehydrogenase YP_001269277.1 4477393 R 351746 CDS YP_001269278.1 148549176 5194237 4478409..4478561 1 NC_009512.1 hypothetical protein 4478561 5194237 Pput_3970 Pseudomonas putida F1 hypothetical protein YP_001269278.1 4478409 D 351746 CDS YP_001269279.1 148549177 5190915 complement(4478635..4479798) 1 NC_009512.1 hypothetical protein 4479798 5190915 Pput_3971 Pseudomonas putida F1 hypothetical protein YP_001269279.1 4478635 R 351746 CDS YP_001269280.1 148549178 5190916 complement(4479810..4480583) 1 NC_009512.1 hypothetical protein 4480583 5190916 Pput_3972 Pseudomonas putida F1 hypothetical protein YP_001269280.1 4479810 R 351746 CDS YP_001269281.1 148549179 5194805 complement(4480638..4483106) 1 NC_009512.1 hypothetical protein 4483106 5194805 Pput_3973 Pseudomonas putida F1 hypothetical protein YP_001269281.1 4480638 R 351746 CDS YP_001269282.1 148549180 5194806 complement(4483181..4483672) 1 NC_009512.1 hypothetical protein 4483672 5194806 Pput_3974 Pseudomonas putida F1 hypothetical protein YP_001269282.1 4483181 R 351746 CDS YP_001269283.1 148549181 5190556 complement(4483741..4484226) 1 NC_009512.1 hypothetical protein 4484226 5190556 Pput_3975 Pseudomonas putida F1 hypothetical protein YP_001269283.1 4483741 R 351746 CDS YP_001269284.1 148549182 5190557 complement(4484380..4486044) 1 NC_009512.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4486044 actP 5190557 actP Pseudomonas putida F1 acetate permease YP_001269284.1 4484380 R 351746 CDS YP_001269285.1 148549183 5193731 complement(4486041..4486352) 1 NC_009512.1 PFAM: protein of unknown function DUF485; hypothetical protein 4486352 5193731 Pput_3977 Pseudomonas putida F1 hypothetical protein YP_001269285.1 4486041 R 351746 CDS YP_001269286.1 148549184 5193732 complement(4486557..4487417) 1 NC_009512.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 4487417 5193732 Pput_3978 Pseudomonas putida F1 glycine betaine ABC transporter substrate-binding protein YP_001269286.1 4486557 R 351746 CDS YP_001269287.1 148549185 5195058 4487615..4489180 1 NC_009512.1 exo-beta-1 3-glucanase-like protein 4489180 5195058 Pput_3979 Pseudomonas putida F1 exo-beta-1 3-glucanase-like protein YP_001269287.1 4487615 D 351746 CDS YP_001269288.1 148549186 5195059 complement(4489256..4489621) 1 NC_009512.1 hypothetical protein 4489621 5195059 Pput_3980 Pseudomonas putida F1 hypothetical protein YP_001269288.1 4489256 R 351746 CDS YP_001269289.1 148549187 5190423 4489812..4491110 1 NC_009512.1 hypothetical protein 4491110 5190423 Pput_3981 Pseudomonas putida F1 hypothetical protein YP_001269289.1 4489812 D 351746 CDS YP_001269290.1 148549188 5190424 4491103..4491930 1 NC_009512.1 PFAM: VacJ family lipoprotein; VacJ family lipoprotein 4491930 5190424 Pput_3982 Pseudomonas putida F1 VacJ family lipoprotein YP_001269290.1 4491103 D 351746 CDS YP_001269291.1 148549189 5191588 complement(4492018..4493166) 1 NC_009512.1 PFAM: Patatin; patatin 4493166 5191588 Pput_3983 Pseudomonas putida F1 patatin YP_001269291.1 4492018 R 351746 CDS YP_001269292.1 148549190 5191589 complement(4493312..4494247) 1 NC_009512.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 4494247 5191589 Pput_3984 Pseudomonas putida F1 lipid A biosynthesis lauroyl acyltransferase YP_001269292.1 4493312 R 351746 CDS YP_001269293.1 148549191 5190207 4494359..4495126 1 NC_009512.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 4495126 minC 5190207 minC Pseudomonas putida F1 septum formation inhibitor YP_001269293.1 4494359 D 351746 CDS YP_001269294.1 148549192 5190208 4495236..4496048 1 NC_009512.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 4496048 5190208 Pput_3986 Pseudomonas putida F1 septum site-determining protein MinD YP_001269294.1 4495236 D 351746 CDS YP_001269295.1 148549193 5194642 4496052..4496306 1 NC_009512.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 4496306 minE 5194642 minE Pseudomonas putida F1 cell division topological specificity factor MinE YP_001269295.1 4496052 D 351746 CDS YP_001269296.1 148549194 5194643 4496458..4497093 1 NC_009512.1 PFAM: pseudouridine synthase; pseudouridine synthase 4497093 5194643 Pput_3988 Pseudomonas putida F1 pseudouridine synthase YP_001269296.1 4496458 D 351746 CDS YP_001269297.1 148549195 5190958 4497262..4498551 1 NC_009512.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 4498551 5190958 Pput_3989 Pseudomonas putida F1 putative aminopeptidase 2 YP_001269297.1 4497262 D 351746 CDS YP_001269298.1 148549196 5190959 4498689..4498856 1 NC_009512.1 hypothetical protein 4498856 5190959 Pput_3990 Pseudomonas putida F1 hypothetical protein YP_001269298.1 4498689 D 351746 CDS YP_001269299.1 148549197 5194704 4498901..4501048 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4501048 5194704 Pput_3991 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001269299.1 4498901 D 351746 CDS YP_001269300.1 148549198 5194705 complement(4501080..4501793) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 4501793 5194705 Pput_3992 Pseudomonas putida F1 GntR family transcriptional regulator YP_001269300.1 4501080 R 351746 CDS YP_001269301.1 148549199 5195278 4502121..4503185 1 NC_009512.1 Fe3+ ABC transporter periplasmic component-like protein 4503185 5195278 Pput_3993 Pseudomonas putida F1 Fe3+ ABC transporter periplasmic component-like protein YP_001269301.1 4502121 D 351746 CDS YP_001269302.1 148549200 5195279 4503300..4504121 1 NC_009512.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; type I phosphodiesterase/nucleotide pyrophosphatase 4504121 5195279 Pput_3994 Pseudomonas putida F1 type I phosphodiesterase/nucleotide pyrophosphatase YP_001269302.1 4503300 D 351746 CDS YP_001269303.1 148549201 5192613 4504130..4504957 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4504957 5192613 Pput_3995 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001269303.1 4504130 D 351746 CDS YP_001269304.1 148549202 5192614 4504947..4505741 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4505741 5192614 Pput_3996 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001269304.1 4504947 D 351746 CDS YP_001269305.1 148549203 5193116 4505743..4506732 1 NC_009512.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 4506732 5193116 Pput_3997 Pseudomonas putida F1 ABC transporter-like protein YP_001269305.1 4505743 D 351746 CDS YP_001269306.1 148549204 5193117 4506747..4507400 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4507400 5193117 Pput_3998 Pseudomonas putida F1 HAD family hydrolase YP_001269306.1 4506747 D 351746 CDS YP_001269307.1 148549205 5192244 complement(4507520..4508482) 1 NC_009512.1 TIGRFAM: Quinone oxidoreductase putative, PIG3; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; quinone oxidoreductase 4508482 5192244 Pput_3999 Pseudomonas putida F1 quinone oxidoreductase YP_001269307.1 4507520 R 351746 CDS YP_001269308.1 148549206 5192245 4508589..4510703 1 NC_009512.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4510703 5192245 Pput_4000 Pseudomonas putida F1 carboxyl-terminal protease YP_001269308.1 4508589 D 351746 CDS YP_001269309.1 148549207 5193920 4510821..4511894 1 NC_009512.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 4511894 5193920 Pput_4001 Pseudomonas putida F1 diguanylate phosphodiesterase YP_001269309.1 4510821 D 351746 CDS YP_001269310.1 148549208 5193921 complement(4512082..4512450) 1 NC_009512.1 hypothetical protein 4512450 5193921 Pput_4002 Pseudomonas putida F1 hypothetical protein YP_001269310.1 4512082 R 351746 CDS YP_001269311.1 148549209 5190466 complement(4512447..4512785) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 4512785 5190466 Pput_4003 Pseudomonas putida F1 XRE family transcriptional regulator YP_001269311.1 4512447 R 351746 CDS YP_001269312.1 148549210 5190467 complement(4512900..4513337) 1 NC_009512.1 PFAM: protein of unknown function DUF1232; hypothetical protein 4513337 5190467 Pput_4004 Pseudomonas putida F1 hypothetical protein YP_001269312.1 4512900 R 351746 CDS YP_001269313.1 148549211 5193774 complement(4513626..4514378) 1 NC_009512.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4514378 5193774 Pput_4005 Pseudomonas putida F1 FKBP-type peptidylprolyl isomerase YP_001269313.1 4513626 R 351746 CDS YP_001269314.1 148549212 5193775 complement(4514665..4515597) 1 NC_009512.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4515597 5193775 Pput_4006 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269314.1 4514665 R 351746 CDS YP_001269315.1 148549213 5192480 4515794..4517074 1 NC_009512.1 hypothetical protein 4517074 5192480 Pput_4007 Pseudomonas putida F1 hypothetical protein YP_001269315.1 4515794 D 351746 CDS YP_001269316.1 148549214 5192481 4517272..4517556 1 NC_009512.1 hypothetical protein 4517556 5192481 Pput_4008 Pseudomonas putida F1 hypothetical protein YP_001269316.1 4517272 D 351746 CDS YP_001269317.1 148549215 5190713 complement(4517686..4518615) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4518615 5190713 Pput_4009 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001269317.1 4517686 R 351746 CDS YP_001269318.1 148549216 5190714 4518911..4520251 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4520251 5190714 Pput_4010 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269318.1 4518911 D 351746 CDS YP_001269319.1 148549217 5195284 4520472..4521182 1 NC_009512.1 PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 4521182 5195284 Pput_4011 Pseudomonas putida F1 fumarylacetoacetate (FAA) hydrolase YP_001269319.1 4520472 D 351746 CDS YP_001269320.1 148549218 5195285 4521201..4521959 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4521959 5195285 Pput_4012 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001269320.1 4521201 D 351746 CDS YP_001269321.1 148549219 5192538 4521984..4522934 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4522934 5192538 Pput_4013 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001269321.1 4521984 D 351746 CDS YP_001269322.1 148549220 5192539 complement(4523062..4523424) 1 NC_009512.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; nitrite reductase (NAD(P)H) small subunit 4523424 5192539 Pput_4014 Pseudomonas putida F1 nitrite reductase (NAD(P)H) small subunit YP_001269322.1 4523062 R 351746 CDS YP_001269323.1 148549221 5193538 complement(4523424..4525976) 1 NC_009512.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; nitrite reductase (NAD(P)H) large subunit 4525976 5193538 Pput_4015 Pseudomonas putida F1 nitrite reductase (NAD(P)H) large subunit YP_001269323.1 4523424 R 351746 CDS YP_001269324.1 148549222 5193539 complement(4526256..4530281) 1 NC_009512.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; molybdopterin oxidoreductase 4530281 5193539 Pput_4016 Pseudomonas putida F1 molybdopterin oxidoreductase YP_001269324.1 4526256 R 351746 CDS YP_001269325.1 148549223 5190405 4530600..4531397 1 NC_009512.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 4531397 5190405 Pput_4017 Pseudomonas putida F1 methionine aminopeptidase YP_001269325.1 4530600 D 351746 CDS YP_001269326.1 148549224 5191699 4532193..4533149 1 NC_009512.1 Required for efficient pilin antigenic variation; recombination associated protein 4533149 rdgC 5191699 rdgC Pseudomonas putida F1 recombination associated protein YP_001269326.1 4532193 D 351746 CDS YP_001269327.1 148549225 5195290 4533544..4533861 1 NC_009512.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 4533861 5195290 Pput_4019 Pseudomonas putida F1 small multidrug resistance protein YP_001269327.1 4533544 D 351746 CDS YP_001269328.1 148549226 5195291 complement(4533866..4535743) 1 NC_009512.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; phospholipid/glycerol acyltransferase 4535743 5195291 Pput_4020 Pseudomonas putida F1 phospholipid/glycerol acyltransferase YP_001269328.1 4533866 R 351746 CDS YP_001269329.1 148549227 5192312 complement(4535901..4536743) 1 NC_009512.1 PFAM: amidohydrolase 2; amidohydrolase 2 4536743 5192312 Pput_4021 Pseudomonas putida F1 amidohydrolase 2 YP_001269329.1 4535901 R 351746 CDS YP_001269330.1 148549228 5192313 complement(4536759..4538033) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 4538033 5192313 Pput_4022 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269330.1 4536759 R 351746 CDS YP_001269331.1 148549229 5193914 complement(4538128..4538859) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 4538859 5193914 Pput_4023 Pseudomonas putida F1 GntR family transcriptional regulator YP_001269331.1 4538128 R 351746 CDS YP_001269332.1 148549230 5193915 4539055..4540269 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4540269 5193915 Pput_4024 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269332.1 4539055 D 351746 CDS YP_001269333.1 148549231 5191338 4540396..4543875 1 NC_009512.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 4543875 5191338 Pput_4025 Pseudomonas putida F1 integral membrane sensor hybrid histidine kinase YP_001269333.1 4540396 D 351746 CDS YP_001269334.1 148549232 5191339 complement(4543847..4545334) 1 NC_009512.1 PFAM: protein of unknown function DUF195; hypothetical protein 4545334 5191339 Pput_4026 Pseudomonas putida F1 hypothetical protein YP_001269334.1 4543847 R 351746 CDS YP_001269335.1 148549233 5193944 complement(4545765..4546184) 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4546184 5193944 Pput_4027 Pseudomonas putida F1 Sel1 domain-containing protein YP_001269335.1 4545765 R 351746 CDS YP_001269336.1 148549234 5193945 4547136..4547360 1 NC_009512.1 hypothetical protein 4547360 5193945 Pput_4028 Pseudomonas putida F1 hypothetical protein YP_001269336.1 4547136 D 351746 CDS YP_001269337.1 148549235 5193254 4547610..4548092 1 NC_009512.1 hypothetical protein 4548092 5193254 Pput_4029 Pseudomonas putida F1 hypothetical protein YP_001269337.1 4547610 D 351746 CDS YP_001269338.1 148549236 5193255 4548239..4549519 1 NC_009512.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 4549519 5193255 Pput_4030 Pseudomonas putida F1 aromatic hydrocarbon degradation membrane protein YP_001269338.1 4548239 D 351746 CDS YP_001269339.1 148549237 5193107 complement(4549561..4550490) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4550490 5193107 Pput_4031 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269339.1 4549561 R 351746 CDS YP_001269340.1 148549238 5193108 4550605..4550865 1 NC_009512.1 hypothetical protein 4550865 5193108 Pput_4032 Pseudomonas putida F1 hypothetical protein YP_001269340.1 4550605 D 351746 CDS YP_001269341.1 148549239 5193144 complement(4551010..4551561) 1 NC_009512.1 PFAM: glutathione peroxidase; Redoxin domain protein; glutathione peroxidase 4551561 5193144 Pput_4033 Pseudomonas putida F1 glutathione peroxidase YP_001269341.1 4551010 R 351746 CDS YP_001269342.1 148549240 5193145 complement(4551608..4551730) 1 NC_009512.1 hypothetical protein 4551730 5193145 Pput_4034 Pseudomonas putida F1 hypothetical protein YP_001269342.1 4551608 R 351746 CDS YP_001269343.1 148549241 5193799 complement(4551727..4552929) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4552929 5193799 Pput_4035 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269343.1 4551727 R 351746 CDS YP_001269344.1 148549242 5193800 complement(4552993..4553397) 1 NC_009512.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 4553397 5193800 Pput_4036 Pseudomonas putida F1 MarR family transcriptional regulator YP_001269344.1 4552993 R 351746 CDS YP_001269345.1 148549243 5193428 complement(4553460..4554641) 1 NC_009512.1 PFAM: glycoside hydrolase, family 5; glycoside hydrolase 4554641 5193428 Pput_4037 Pseudomonas putida F1 glycoside hydrolase YP_001269345.1 4553460 R 351746 CDS YP_001269346.1 148549244 5193429 complement(4554801..4555523) 1 NC_009512.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 4555523 cobS 5193429 cobS Pseudomonas putida F1 cobalamin synthase YP_001269346.1 4554801 R 351746 CDS YP_001269347.1 148549245 5192430 complement(4555525..4556091) 1 NC_009512.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 4556091 5192430 Pput_4039 Pseudomonas putida F1 phosphoglycerate mutase YP_001269347.1 4555525 R 351746 CDS YP_001269348.1 148549246 5192431 complement(4556088..4557143) 1 NC_009512.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 4557143 cobT 5192431 cobT Pseudomonas putida F1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001269348.1 4556088 R 351746 CDS YP_001269349.1 148549247 5191376 complement(4557140..4557661) 1 NC_009512.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 4557661 cobU 5191376 cobU Pseudomonas putida F1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_001269349.1 4557140 R 351746 CDS YP_001269350.1 148549248 5191377 complement(4557663..4559117) 1 NC_009512.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 4559117 5191377 Pput_4042 Pseudomonas putida F1 cobyric acid synthase YP_001269350.1 4557663 R 351746 CDS YP_001269351.1 148549249 5190359 complement(4559114..4560106) 1 NC_009512.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 4560106 5190359 Pput_4043 Pseudomonas putida F1 threonine-phosphate decarboxylase YP_001269351.1 4559114 R 351746 CDS YP_001269352.1 148549250 5190360 complement(4560099..4561007) 1 NC_009512.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 4561007 cobD 5190360 cobD Pseudomonas putida F1 cobalamin biosynthesis protein YP_001269352.1 4560099 R 351746 CDS YP_001269353.1 148549251 5191596 complement(4561004..4561654) 1 NC_009512.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase 4561654 5191596 Pput_4045 Pseudomonas putida F1 cob(II)yrinic acid a,c-diamide reductase YP_001269353.1 4561004 R 351746 CDS YP_001269354.1 148549252 5191597 complement(4561651..4562946) 1 NC_009512.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 4562946 5191597 Pput_4046 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001269354.1 4561651 R 351746 CDS YP_001269355.1 148549253 5191529 complement(4562943..4563554) 1 NC_009512.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 4563554 5191529 Pput_4047 Pseudomonas putida F1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001269355.1 4562943 R 351746 CDS YP_001269356.1 148549254 5191530 complement(4564017..4564550) 1 NC_009512.1 PFAM: NLP/P60 protein; NLP/P60 protein 4564550 5191530 Pput_4048 Pseudomonas putida F1 NLP/P60 protein YP_001269356.1 4564017 R 351746 CDS YP_001269357.1 148549255 5194224 complement(4564690..4565328) 1 NC_009512.1 PFAM: NLP/P60 protein; NLP/P60 protein 4565328 5194224 Pput_4049 Pseudomonas putida F1 NLP/P60 protein YP_001269357.1 4564690 R 351746 CDS YP_001269358.1 148549256 5194225 complement(4565456..4566163) 1 NC_009512.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 4566163 5194225 Pput_4050 Pseudomonas putida F1 DNA replication initiation factor YP_001269358.1 4565456 R 351746 CDS YP_001269359.1 148549257 5194560 complement(4566403..4567467) 1 NC_009512.1 PFAM: protein of unknown function UPF0118; hypothetical protein 4567467 5194560 Pput_4051 Pseudomonas putida F1 hypothetical protein YP_001269359.1 4566403 R 351746 CDS YP_001269360.1 148549258 5194561 complement(4567489..4568556) 1 NC_009512.1 hypothetical protein 4568556 5194561 Pput_4052 Pseudomonas putida F1 hypothetical protein YP_001269360.1 4567489 R 351746 CDS YP_001269361.1 148549259 5194907 4568877..4569935 1 NC_009512.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 4569935 5194907 Pput_4053 Pseudomonas putida F1 phosphoribosylaminoimidazole synthetase YP_001269361.1 4568877 D 351746 CDS YP_001269362.1 148549260 5194908 4569935..4570588 1 NC_009512.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 4570588 purN 5194908 purN Pseudomonas putida F1 phosphoribosylglycinamide formyltransferase YP_001269362.1 4569935 D 351746 CDS YP_001269363.1 148549261 5194852 4570597..4571307 1 NC_009512.1 hypothetical protein 4571307 5194852 Pput_4055 Pseudomonas putida F1 hypothetical protein YP_001269363.1 4570597 D 351746 CDS YP_001269364.1 148549262 5194853 4571508..4571690 1 NC_009512.1 hypothetical protein 4571690 5194853 Pput_4056 Pseudomonas putida F1 hypothetical protein YP_001269364.1 4571508 D 351746 CDS YP_001269365.1 148549263 5191864 complement(4571791..4574049) 1 NC_009512.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase 4574049 5191864 Pput_4057 Pseudomonas putida F1 glucose-methanol-choline oxidoreductase YP_001269365.1 4571791 R 351746 CDS YP_001269366.1 148549264 5191865 complement(4574046..4574537) 1 NC_009512.1 hypothetical protein 4574537 5191865 Pput_4058 Pseudomonas putida F1 hypothetical protein YP_001269366.1 4574046 R 351746 CDS YP_001269367.1 148549265 5193811 complement(4574542..4575882) 1 NC_009512.1 hypothetical protein 4575882 5193811 Pput_4059 Pseudomonas putida F1 hypothetical protein YP_001269367.1 4574542 R 351746 CDS YP_001269368.1 148549266 5193812 complement(4576221..4576760) 1 NC_009512.1 hypothetical protein 4576760 5193812 Pput_4060 Pseudomonas putida F1 hypothetical protein YP_001269368.1 4576221 R 351746 CDS YP_001269369.1 148549267 5193548 complement(4576787..4577620) 1 NC_009512.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 4577620 mazG 5193548 mazG Pseudomonas putida F1 nucleoside triphosphate pyrophosphohydrolase YP_001269369.1 4576787 R 351746 CDS YP_001269370.1 148549268 5193549 complement(4577745..4579985) 1 NC_009512.1 TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 4579985 5193549 Pput_4062 Pseudomonas putida F1 (p)ppGpp synthetase I SpoT/RelA YP_001269370.1 4577745 R 351746 CDS YP_001269371.1 148549269 5194598 complement(4580082..4581440) 1 NC_009512.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 4581440 rumA 5194598 rumA Pseudomonas putida F1 23S rRNA 5-methyluridine methyltransferase YP_001269371.1 4580082 R 351746 CDS YP_001269372.1 148549270 5194599 complement(4581441..4582379) 1 NC_009512.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 4582379 cysM 5194599 cysM Pseudomonas putida F1 cysteine synthase B YP_001269372.1 4581441 R 351746 CDS YP_001269373.1 148549271 5191302 complement(4582482..4583873) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 4583873 5191302 Pput_4065 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001269373.1 4582482 R 351746 CDS YP_001269374.1 148549272 5191303 complement(4583877..4584638) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 4584638 5191303 Pput_4066 Pseudomonas putida F1 two component transcriptional regulator YP_001269374.1 4583877 R 351746 CDS YP_001269375.1 148549273 5194481 4584790..4587543 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 4587543 5194481 Pput_4067 Pseudomonas putida F1 multi-sensor hybrid histidine kinase YP_001269375.1 4584790 D 351746 CDS YP_001269376.1 148549274 5194482 4587620..4588609 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4588609 5194482 Pput_4068 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001269376.1 4587620 D 351746 CDS YP_001269377.1 148549275 5194393 4588641..4589078 1 NC_009512.1 hypothetical protein 4589078 5194393 Pput_4069 Pseudomonas putida F1 hypothetical protein YP_001269377.1 4588641 D 351746 CDS YP_001269378.1 148549276 5194394 4589075..4589479 1 NC_009512.1 PFAM: protein of unknown function DUF306, Meta and HslJ; hypothetical protein 4589479 5194394 Pput_4070 Pseudomonas putida F1 hypothetical protein YP_001269378.1 4589075 D 351746 CDS YP_001269379.1 148549277 5194230 complement(4589594..4590058) 1 NC_009512.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 4590058 5194230 Pput_4071 Pseudomonas putida F1 alkyl hydroperoxide reductase YP_001269379.1 4589594 R 351746 CDS YP_001269380.1 148549278 5194231 4590144..4590497 1 NC_009512.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 4590497 5194231 Pput_4072 Pseudomonas putida F1 arsenate reductase YP_001269380.1 4590144 D 351746 CDS YP_001269381.1 148549279 5190802 4590494..4591099 1 NC_009512.1 PFAM: flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 4591099 5190802 Pput_4073 Pseudomonas putida F1 flavodoxin/nitric oxide synthase YP_001269381.1 4590494 D 351746 CDS YP_001269382.1 148549280 5190803 4591092..4591505 1 NC_009512.1 hypothetical protein 4591505 5190803 Pput_4074 Pseudomonas putida F1 hypothetical protein YP_001269382.1 4591092 D 351746 CDS YP_001269383.1 148549281 5193442 complement(4591609..4592280) 1 NC_009512.1 3-methyladenine DNA glycosylase 4592280 5193442 Pput_4075 Pseudomonas putida F1 3-methyladenine DNA glycosylase YP_001269383.1 4591609 R 351746 CDS YP_001269384.1 148549282 5193443 complement(4592285..4593109) 1 NC_009512.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 4593109 5193443 Pput_4076 Pseudomonas putida F1 C32 tRNA thiolase YP_001269384.1 4592285 R 351746 CDS YP_001269385.1 148549283 5191974 4593373..4593972 1 NC_009512.1 PFAM: protein of unknown function DUF1282; hypothetical protein 4593972 5191974 Pput_4077 Pseudomonas putida F1 hypothetical protein YP_001269385.1 4593373 D 351746 CDS YP_001269386.1 148549284 5191975 4594104..4594598 1 NC_009512.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; hypothetical protein 4594598 5191975 Pput_4078 Pseudomonas putida F1 hypothetical protein YP_001269386.1 4594104 D 351746 CDS YP_001269387.1 148549285 5192536 complement(4594785..4595564) 1 NC_009512.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 4595564 5192536 Pput_4079 Pseudomonas putida F1 oxidoreductase FAD/NAD(P)-binding subunit YP_001269387.1 4594785 R 351746 CDS YP_001269388.1 148549286 5192537 4595682..4596608 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4596608 5192537 Pput_4080 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269388.1 4595682 D 351746 CDS YP_001269389.1 148549287 5192281 complement(4596605..4596970) 1 NC_009512.1 PFAM: diacylglycerol kinase; diacylglycerol kinase 4596970 5192281 Pput_4081 Pseudomonas putida F1 diacylglycerol kinase YP_001269389.1 4596605 R 351746 CDS YP_001269390.1 148549288 5192282 complement(4597044..4597694) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 4597694 5192282 Pput_4082 Pseudomonas putida F1 two component LuxR family transcriptional regulator YP_001269390.1 4597044 R 351746 CDS YP_001269391.1 148549289 5194179 complement(4597873..4598583) 1 NC_009512.1 PFAM: DTW domain containing protein; DTW domain-containing protein 4598583 5194179 Pput_4083 Pseudomonas putida F1 DTW domain-containing protein YP_001269391.1 4597873 R 351746 CDS YP_001269392.1 148549290 5194180 4598800..4599219 1 NC_009512.1 hypothetical protein 4599219 5194180 Pput_4084 Pseudomonas putida F1 hypothetical protein YP_001269392.1 4598800 D 351746 CDS YP_001269393.1 148549291 5192572 complement(4599234..4599443) 1 NC_009512.1 hypothetical protein 4599443 5192572 Pput_4085 Pseudomonas putida F1 hypothetical protein YP_001269393.1 4599234 R 351746 CDS YP_001269394.1 148549292 5192573 4599604..4600722 1 NC_009512.1 PFAM: conserved hypothetical protein 730; hypothetical protein 4600722 5192573 Pput_4086 Pseudomonas putida F1 hypothetical protein YP_001269394.1 4599604 D 351746 CDS YP_001269395.1 148549293 5194626 complement(4600989..4601459) 1 NC_009512.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 4601459 recX 5194626 recX Pseudomonas putida F1 recombination regulator RecX YP_001269395.1 4600989 R 351746 CDS YP_001269396.1 148549294 5194627 complement(4601481..4602548) 1 NC_009512.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 4602548 recA 5194627 recA Pseudomonas putida F1 recombinase A YP_001269396.1 4601481 R 351746 CDS YP_001269397.1 148549295 5192463 complement(4602652..4603134) 1 NC_009512.1 PFAM: CinA domain protein; CinA domain-containing protein 4603134 5192463 Pput_4089 Pseudomonas putida F1 CinA domain-containing protein YP_001269397.1 4602652 R 351746 CDS YP_001269398.1 148549296 5192464 complement(4603191..4604258) 1 NC_009512.1 hypothetical protein 4604258 5192464 Pput_4090 Pseudomonas putida F1 hypothetical protein YP_001269398.1 4603191 R 351746 CDS YP_001269399.1 148549297 5193737 4605034..4605915 1 NC_009512.1 PFAM: protein of unknown function DUF114; hypothetical protein 4605915 5193737 Pput_4091 Pseudomonas putida F1 hypothetical protein YP_001269399.1 4605034 D 351746 CDS YP_001269400.1 148549298 5193738 complement(4605952..4606257) 1 NC_009512.1 hypothetical protein 4606257 5193738 Pput_4092 Pseudomonas putida F1 hypothetical protein YP_001269400.1 4605952 R 351746 CDS YP_001269401.1 148549299 5192486 complement(4606254..4606547) 1 NC_009512.1 hypothetical protein 4606547 5192486 Pput_4093 Pseudomonas putida F1 hypothetical protein YP_001269401.1 4606254 R 351746 CDS YP_001269402.1 148549300 5192487 complement(4606621..4606845) 1 NC_009512.1 hypothetical protein 4606845 5192487 Pput_4094 Pseudomonas putida F1 hypothetical protein YP_001269402.1 4606621 R 351746 CDS YP_001269403.1 148549301 5191547 complement(4606859..4607353) 1 NC_009512.1 hypothetical protein 4607353 5191547 Pput_4095 Pseudomonas putida F1 hypothetical protein YP_001269403.1 4606859 R 351746 CDS YP_001269404.1 148549302 5191548 complement(4607350..4607799) 1 NC_009512.1 hypothetical protein 4607799 5191548 Pput_4096 Pseudomonas putida F1 hypothetical protein YP_001269404.1 4607350 R 351746 CDS YP_001269405.1 148549303 5193643 complement(4607896..4608702) 1 NC_009512.1 hypothetical protein 4608702 5193643 Pput_4097 Pseudomonas putida F1 hypothetical protein YP_001269405.1 4607896 R 351746 CDS YP_001269406.1 148549304 5193644 complement(4608727..4610664) 1 NC_009512.1 hypothetical protein 4610664 5193644 Pput_4098 Pseudomonas putida F1 hypothetical protein YP_001269406.1 4608727 R 351746 CDS YP_001269407.1 148549305 5195515 complement(4610708..4611190) 1 NC_009512.1 hypothetical protein 4611190 5195515 Pput_4099 Pseudomonas putida F1 hypothetical protein YP_001269407.1 4610708 R 351746 CDS YP_001269408.1 148549306 5195516 complement(4611202..4614300) 1 NC_009512.1 hypothetical protein 4614300 5195516 Pput_4100 Pseudomonas putida F1 hypothetical protein YP_001269408.1 4611202 R 351746 CDS YP_001269409.1 148549307 5194606 complement(4614272..4614691) 1 NC_009512.1 hypothetical protein 4614691 5194606 Pput_4101 Pseudomonas putida F1 hypothetical protein YP_001269409.1 4614272 R 351746 CDS YP_001269410.1 148549308 5194607 complement(4615075..4615557) 1 NC_009512.1 PFAM: Domain of unknown function DUF1833; hypothetical protein 4615557 5194607 Pput_4102 Pseudomonas putida F1 hypothetical protein YP_001269410.1 4615075 R 351746 CDS YP_001269411.1 148549309 5194440 complement(4615554..4617998) 1 NC_009512.1 hypothetical protein 4617998 5194440 Pput_4103 Pseudomonas putida F1 hypothetical protein YP_001269411.1 4615554 R 351746 CDS YP_001269412.1 148549310 5194441 complement(4618054..4618404) 1 NC_009512.1 hypothetical protein 4618404 5194441 Pput_4104 Pseudomonas putida F1 hypothetical protein YP_001269412.1 4618054 R 351746 CDS YP_001269413.1 148549311 5194882 complement(4618478..4618678) 1 NC_009512.1 hypothetical protein 4618678 5194882 Pput_4105 Pseudomonas putida F1 hypothetical protein YP_001269413.1 4618478 R 351746 CDS YP_001269414.1 148549312 5194883 complement(4618702..4619172) 1 NC_009512.1 hypothetical protein 4619172 5194883 Pput_4106 Pseudomonas putida F1 hypothetical protein YP_001269414.1 4618702 R 351746 CDS YP_001269415.1 148549313 5190990 complement(4619181..4619915) 1 NC_009512.1 hypothetical protein 4619915 5190990 Pput_4107 Pseudomonas putida F1 hypothetical protein YP_001269415.1 4619181 R 351746 CDS YP_001269416.1 148549314 5190991 complement(4619981..4620349) 1 NC_009512.1 hypothetical protein 4620349 5190991 Pput_4108 Pseudomonas putida F1 hypothetical protein YP_001269416.1 4619981 R 351746 CDS YP_001269417.1 148549315 5192800 complement(4620346..4620831) 1 NC_009512.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; HK97 family phage protein 4620831 5192800 Pput_4109 Pseudomonas putida F1 HK97 family phage protein YP_001269417.1 4620346 R 351746 CDS YP_001269418.1 148549316 5192801 complement(4620824..4621168) 1 NC_009512.1 PFAM: phage head-tail adaptor, putative; phage head-tail adaptor 4621168 5192801 Pput_4110 Pseudomonas putida F1 phage head-tail adaptor YP_001269418.1 4620824 R 351746 CDS YP_001269419.1 148549317 5192184 complement(4621165..4621488) 1 NC_009512.1 hypothetical protein 4621488 5192184 Pput_4111 Pseudomonas putida F1 hypothetical protein YP_001269419.1 4621165 R 351746 CDS YP_001269420.1 148549318 5192185 complement(4621485..4622429) 1 NC_009512.1 hypothetical protein 4622429 5192185 Pput_4112 Pseudomonas putida F1 hypothetical protein YP_001269420.1 4621485 R 351746 CDS YP_001269421.1 148549319 5195218 complement(4622416..4623783) 1 NC_009512.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; HK97 family phage portal protein 4623783 5195218 Pput_4113 Pseudomonas putida F1 HK97 family phage portal protein YP_001269421.1 4622416 R 351746 CDS YP_001269422.1 148549320 5195219 complement(4623798..4624022) 1 NC_009512.1 hypothetical protein 4624022 5195219 Pput_4114 Pseudomonas putida F1 hypothetical protein YP_001269422.1 4623798 R 351746 CDS YP_001269423.1 148549321 5191708 complement(4624070..4626019) 1 NC_009512.1 PFAM: peptidase U35, phage prohead HK97; peptidase U35, phage prohead HK97 4626019 5191708 Pput_4115 Pseudomonas putida F1 peptidase U35, phage prohead HK97 YP_001269423.1 4624070 R 351746 CDS YP_001269424.1 148549322 5191709 complement(4626076..4627743) 1 NC_009512.1 PFAM: phage Terminase; phage terminase 4627743 5191709 Pput_4116 Pseudomonas putida F1 phage terminase YP_001269424.1 4626076 R 351746 CDS YP_001269425.1 148549323 5190342 complement(4627746..4628243) 1 NC_009512.1 hypothetical protein 4628243 5190342 Pput_4117 Pseudomonas putida F1 hypothetical protein YP_001269425.1 4627746 R 351746 CDS YP_001269426.1 148549324 5190343 complement(4628389..4628694) 1 NC_009512.1 PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 4628694 5190343 Pput_4118 Pseudomonas putida F1 HNH endonuclease YP_001269426.1 4628389 R 351746 CDS YP_001269427.1 148549325 5193100 complement(4628694..4628933) 1 NC_009512.1 hypothetical protein 4628933 5193100 Pput_4119 Pseudomonas putida F1 hypothetical protein YP_001269427.1 4628694 R 351746 CDS YP_001269428.1 148549326 5193101 complement(4628933..4629181) 1 NC_009512.1 hypothetical protein 4629181 5193101 Pput_4120 Pseudomonas putida F1 hypothetical protein YP_001269428.1 4628933 R 351746 CDS YP_001269429.1 148549327 5195539 complement(4629178..4629459) 1 NC_009512.1 PFAM: protein of unknown function DUF754; hypothetical protein 4629459 5195539 Pput_4121 Pseudomonas putida F1 hypothetical protein YP_001269429.1 4629178 R 351746 CDS YP_001269430.1 148549328 5195540 complement(4629460..4629834) 1 NC_009512.1 hypothetical protein 4629834 5195540 Pput_4122 Pseudomonas putida F1 hypothetical protein YP_001269430.1 4629460 R 351746 CDS YP_001269431.1 148549329 5192592 complement(4629994..4630680) 1 NC_009512.1 hypothetical protein 4630680 5192592 Pput_4123 Pseudomonas putida F1 hypothetical protein YP_001269431.1 4629994 R 351746 CDS YP_001269432.1 148549330 5192593 complement(4630691..4631008) 1 NC_009512.1 hypothetical protein 4631008 5192593 Pput_4124 Pseudomonas putida F1 hypothetical protein YP_001269432.1 4630691 R 351746 CDS YP_001269433.1 148549331 5193150 complement(4631005..4631172) 1 NC_009512.1 hypothetical protein 4631172 5193150 Pput_4125 Pseudomonas putida F1 hypothetical protein YP_001269433.1 4631005 R 351746 CDS YP_001269434.1 148549332 5193151 complement(4631169..4632467) 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 4632467 5193151 Pput_4126 Pseudomonas putida F1 phage integrase family protein YP_001269434.1 4631169 R 351746 CDS YP_001269435.1 148549333 5194043 complement(4632464..4632892) 1 NC_009512.1 PFAM: VRR-NUC; VRR-NUC domain-containing protein 4632892 5194043 Pput_4127 Pseudomonas putida F1 VRR-NUC domain-containing protein YP_001269435.1 4632464 R 351746 CDS YP_001269436.1 148549334 5194044 complement(4632889..4633185) 1 NC_009512.1 PFAM: protein of unknown function DUF1364; hypothetical protein 4633185 5194044 Pput_4128 Pseudomonas putida F1 hypothetical protein YP_001269436.1 4632889 R 351746 CDS YP_001269437.1 148549335 5192952 complement(4633185..4633979) 1 NC_009512.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 4633979 5192952 Pput_4129 Pseudomonas putida F1 IstB ATP binding domain-containing protein YP_001269437.1 4633185 R 351746 CDS YP_001269438.1 148549336 5192953 complement(4633969..4634826) 1 NC_009512.1 TIGRFAM: phage replication protein O; PFAM: phage replication protein O domain protein; phage replication protein O 4634826 5192953 Pput_4130 Pseudomonas putida F1 phage replication protein O YP_001269438.1 4633969 R 351746 CDS YP_001269439.1 148549337 5192848 4635265..4636086 1 NC_009512.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative phage repressor 4636086 5192848 Pput_4131 Pseudomonas putida F1 putative phage repressor YP_001269439.1 4635265 D 351746 CDS YP_001269440.1 148549338 5192849 complement(4636132..4636446) 1 NC_009512.1 PFAM: protein of unknown function DUF1654; hypothetical protein 4636446 5192849 Pput_4132 Pseudomonas putida F1 hypothetical protein YP_001269440.1 4636132 R 351746 CDS YP_001269441.1 148549339 5192415 4636853..4637077 1 NC_009512.1 hypothetical protein 4637077 5192415 Pput_4133 Pseudomonas putida F1 hypothetical protein YP_001269441.1 4636853 D 351746 CDS YP_001269442.1 148549340 5192416 4637208..4637591 1 NC_009512.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; response regulator receiver protein 4637591 5192416 Pput_4134 Pseudomonas putida F1 response regulator receiver protein YP_001269442.1 4637208 D 351746 CDS YP_001269443.1 148549341 5193840 4637611..4637949 1 NC_009512.1 hypothetical protein 4637949 5193840 Pput_4135 Pseudomonas putida F1 hypothetical protein YP_001269443.1 4637611 D 351746 CDS YP_001269444.1 148549342 5193841 4637946..4638443 1 NC_009512.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4638443 5193841 Pput_4136 Pseudomonas putida F1 single-strand binding protein YP_001269444.1 4637946 D 351746 CDS YP_001269445.1 148549343 5192409 4638446..4638607 1 NC_009512.1 hypothetical protein 4638607 5192409 Pput_4137 Pseudomonas putida F1 hypothetical protein YP_001269445.1 4638446 D 351746 CDS YP_001269446.1 148549344 5192410 4638928..4639533 1 NC_009512.1 hypothetical protein 4639533 5192410 Pput_4138 Pseudomonas putida F1 hypothetical protein YP_001269446.1 4638928 D 351746 CDS YP_001269447.1 148549345 5195118 4639621..4640400 1 NC_009512.1 hypothetical protein 4640400 5195118 Pput_4139 Pseudomonas putida F1 hypothetical protein YP_001269447.1 4639621 D 351746 CDS YP_001269448.1 148549346 5195119 4640397..4641272 1 NC_009512.1 hypothetical protein 4641272 5195119 Pput_4140 Pseudomonas putida F1 hypothetical protein YP_001269448.1 4640397 D 351746 CDS YP_001269449.1 148549347 5194053 4641279..4642220 1 NC_009512.1 hypothetical protein 4642220 5194053 Pput_4141 Pseudomonas putida F1 hypothetical protein YP_001269449.1 4641279 D 351746 CDS YP_001269450.1 148549348 5194054 4642217..4642369 1 NC_009512.1 hypothetical protein 4642369 5194054 Pput_4142 Pseudomonas putida F1 hypothetical protein YP_001269450.1 4642217 D 351746 CDS YP_001269451.1 148549349 5192842 4642419..4643213 1 NC_009512.1 hypothetical protein 4643213 5192842 Pput_4143 Pseudomonas putida F1 hypothetical protein YP_001269451.1 4642419 D 351746 CDS YP_001269452.1 148549350 5192843 4643210..4643479 1 NC_009512.1 hypothetical protein 4643479 5192843 Pput_4144 Pseudomonas putida F1 hypothetical protein YP_001269452.1 4643210 D 351746 CDS YP_001269453.1 148549351 5193245 4643476..4643757 1 NC_009512.1 hypothetical protein 4643757 5193245 Pput_4145 Pseudomonas putida F1 hypothetical protein YP_001269453.1 4643476 D 351746 CDS YP_001269454.1 148549352 5193246 4643754..4644149 1 NC_009512.1 hypothetical protein 4644149 5193246 Pput_4146 Pseudomonas putida F1 hypothetical protein YP_001269454.1 4643754 D 351746 CDS YP_001269455.1 148549353 5193264 4644146..4644502 1 NC_009512.1 hypothetical protein 4644502 5193264 Pput_4147 Pseudomonas putida F1 hypothetical protein YP_001269455.1 4644146 D 351746 CDS YP_001269456.1 148549354 5193265 4644733..4645125 1 NC_009512.1 hypothetical protein 4645125 5193265 Pput_4148 Pseudomonas putida F1 hypothetical protein YP_001269456.1 4644733 D 351746 CDS YP_001269457.1 148549355 5192286 4645107..4645355 1 NC_009512.1 hypothetical protein 4645355 5192286 Pput_4149 Pseudomonas putida F1 hypothetical protein YP_001269457.1 4645107 D 351746 CDS YP_001269458.1 148549356 5192287 4645368..4646348 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 4646348 5192287 Pput_4150 Pseudomonas putida F1 phage integrase family protein YP_001269458.1 4645368 D 351746 CDS YP_001269459.1 148549357 5192909 complement(4646532..4647257) 1 NC_009512.1 PFAM: Zeta toxin family protein; zeta toxin family protein 4647257 5192909 Pput_4151 Pseudomonas putida F1 zeta toxin family protein YP_001269459.1 4646532 R 351746 CDS YP_001269460.1 148549358 5192910 4647450..4650023 1 NC_009512.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 4650023 5192910 Pput_4152 Pseudomonas putida F1 DNA mismatch repair protein MutS YP_001269460.1 4647450 D 351746 CDS YP_001269461.1 148549359 5191102 4650164..4650487 1 NC_009512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4650487 5191102 Pput_4153 Pseudomonas putida F1 4Fe-4S ferredoxin YP_001269461.1 4650164 D 351746 CDS YP_001269462.1 148549360 5191103 complement(4651023..4652030) 1 NC_009512.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 4652030 5191103 Pput_4154 Pseudomonas putida F1 RNA polymerase sigma factor RpoS YP_001269462.1 4651023 R 351746 CDS YP_001269463.1 148549361 5191458 complement(4652139..4652927) 1 NC_009512.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; peptidase M23B 4652927 5191458 Pput_4155 Pseudomonas putida F1 peptidase M23B YP_001269463.1 4652139 R 351746 CDS YP_001269464.1 148549362 5191459 complement(4653234..4653908) 1 NC_009512.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 4653908 pcm 5191459 pcm Pseudomonas putida F1 protein-L-isoaspartate O-methyltransferase YP_001269464.1 4653234 R 351746 CDS YP_001269465.1 148549363 5193195 complement(4653908..4654657) 1 NC_009512.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 4654657 surE 5193195 surE Pseudomonas putida F1 stationary phase survival protein SurE YP_001269465.1 4653908 R 351746 CDS YP_001269466.1 148549364 5193196 complement(4654645..4655703) 1 NC_009512.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 4655703 truD 5193196 truD Pseudomonas putida F1 tRNA pseudouridine synthase D YP_001269466.1 4654645 R 351746 CDS YP_001269467.1 148549365 5192655 complement(4655700..4656173) 1 NC_009512.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 4656173 ispF 5192655 ispF Pseudomonas putida F1 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_001269467.1 4655700 R 351746 CDS YP_001269468.1 148549366 5192656 complement(4656286..4657140) 1 NC_009512.1 TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 4657140 5192656 Pput_4160 Pseudomonas putida F1 S-formylglutathione hydrolase YP_001269468.1 4656286 R 351746 CDS YP_001269469.1 148549367 5192633 complement(4657149..4658261) 1 NC_009512.1 TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase 4658261 5192633 Pput_4161 Pseudomonas putida F1 S-(hydroxymethyl)glutathione dehydrogenase YP_001269469.1 4657149 R 351746 CDS YP_001269470.1 148549368 5192634 4658369..4659265 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4659265 5192634 Pput_4162 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269470.1 4658369 D 351746 CDS YP_001269471.1 148549369 5191737 complement(4659389..4660096) 1 NC_009512.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4660096 ispD 5191737 ispD Pseudomonas putida F1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001269471.1 4659389 R 351746 CDS YP_001269472.1 148549370 5191738 complement(4660093..4660374) 1 NC_009512.1 PFAM: Septum formation initiator; septum formation initiator 4660374 5191738 Pput_4164 Pseudomonas putida F1 septum formation initiator YP_001269472.1 4660093 R 351746 CDS YP_001269473.1 148549371 5192903 complement(4660540..4661829) 1 NC_009512.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 4661829 eno 5192903 eno Pseudomonas putida F1 phosphopyruvate hydratase YP_001269473.1 4660540 R 351746 CDS YP_001269474.1 148549372 5192904 complement(4661984..4662829) 1 NC_009512.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 4662829 5192904 Pput_4166 Pseudomonas putida F1 2-dehydro-3-deoxyphosphooctonate aldolase YP_001269474.1 4661984 R 351746 CDS YP_001269475.1 148549373 5192901 complement(4662833..4664461) 1 NC_009512.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 4664461 pyrG 5192901 pyrG Pseudomonas putida F1 CTP synthetase YP_001269475.1 4662833 R 351746 CDS YP_001269476.1 148549374 5192902 complement(4664543..4664683) 1 NC_009512.1 hypothetical protein 4664683 5192902 Pput_4168 Pseudomonas putida F1 hypothetical protein YP_001269476.1 4664543 R 351746 CDS YP_001269477.1 148549375 5193496 complement(4664729..4666012) 1 NC_009512.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946, PP-loop ATpase; tRNA(Ile)-lysidine synthetase 4666012 5193496 Pput_4169 Pseudomonas putida F1 tRNA(Ile)-lysidine synthetase YP_001269477.1 4664729 R 351746 CDS YP_001269478.1 148549376 5193497 complement(4666182..4667135) 1 NC_009512.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 4667135 5193497 Pput_4170 Pseudomonas putida F1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001269478.1 4666182 R 351746 CDS YP_001269479.1 148549377 5192776 complement(4667236..4670760) 1 NC_009512.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 4670760 dnaE 5192776 dnaE Pseudomonas putida F1 DNA polymerase III subunit alpha YP_001269479.1 4667236 R 351746 CDS YP_001269480.1 148549378 5192777 complement(4670947..4671570) 1 NC_009512.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 4671570 rnhB 5192777 rnhB Pseudomonas putida F1 ribonuclease HII YP_001269480.1 4670947 R 351746 CDS YP_001269481.1 148549379 5193276 complement(4671572..4672699) 1 NC_009512.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 4672699 lpxB 5193276 lpxB Pseudomonas putida F1 lipid-A-disaccharide synthase YP_001269481.1 4671572 R 351746 CDS YP_001269482.1 148549380 5193277 complement(4672701..4673477) 1 NC_009512.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 4673477 5193277 Pput_4174 Pseudomonas putida F1 UDP-N-acetylglucosamine acyltransferase YP_001269482.1 4672701 R 351746 CDS YP_001269483.1 148549381 5193342 complement(4673474..4673914) 1 NC_009512.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 4673914 fabZ 5193342 fabZ Pseudomonas putida F1 (3R)-hydroxymyristoyl-ACP dehydratase YP_001269483.1 4673474 R 351746 CDS YP_001269484.1 148549382 5193343 complement(4674029..4675084) 1 NC_009512.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 4675084 lpxD 5193343 lpxD Pseudomonas putida F1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001269484.1 4674029 R 351746 CDS YP_001269485.1 148549383 5191252 complement(4675086..4675589) 1 NC_009512.1 PFAM: outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 4675589 5191252 Pput_4177 Pseudomonas putida F1 outer membrane chaperone Skp YP_001269485.1 4675086 R 351746 CDS YP_001269486.1 148549384 5191253 complement(4675634..4677994) 1 NC_009512.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 4677994 5191253 Pput_4178 Pseudomonas putida F1 surface antigen (D15) YP_001269486.1 4675634 R 351746 CDS YP_001269487.1 148549385 5192754 complement(4678068..4679420) 1 NC_009512.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease 4679420 5192754 Pput_4179 Pseudomonas putida F1 putative membrane-associated zinc metalloprotease YP_001269487.1 4678068 R 351746 CDS YP_001269488.1 148549386 5192755 complement(4679493..4680695) 1 NC_009512.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4680695 5192755 Pput_4180 Pseudomonas putida F1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001269488.1 4679493 R 351746 CDS YP_001269489.1 148549387 5191938 complement(4680680..4681495) 1 NC_009512.1 PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 4681495 5191938 Pput_4181 Pseudomonas putida F1 phosphatidate cytidylyltransferase YP_001269489.1 4680680 R 351746 CDS YP_001269490.1 148549388 5191939 complement(4681495..4682250) 1 NC_009512.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 4682250 5191939 Pput_4182 Pseudomonas putida F1 undecaprenyl diphosphate synthase YP_001269490.1 4681495 R 351746 CDS YP_001269491.1 148549389 5191514 complement(4682266..4682823) 1 NC_009512.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 4682823 frr 5191514 frr Pseudomonas putida F1 ribosome recycling factor YP_001269491.1 4682266 R 351746 CDS YP_001269492.1 148549390 5191515 complement(4682820..4683563) 1 NC_009512.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 4683563 pyrH 5191515 pyrH Pseudomonas putida F1 uridylate kinase YP_001269492.1 4682820 R 351746 CDS YP_001269493.1 148549391 5192208 complement(4683745..4684608) 1 NC_009512.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 4684608 tsf 5192208 tsf Pseudomonas putida F1 elongation factor Ts YP_001269493.1 4683745 R 351746 CDS YP_001269494.1 148549392 5192209 complement(4684794..4685531) 1 NC_009512.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 4685531 rpsB 5192209 rpsB Pseudomonas putida F1 30S ribosomal protein S2 YP_001269494.1 4684794 R 351746 CDS YP_001269495.1 148549393 5192564 4685878..4686660 1 NC_009512.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 4686660 5192564 Pput_4187 Pseudomonas putida F1 methionine aminopeptidase YP_001269495.1 4685878 D 351746 CDS YP_001269496.1 148549394 5192565 4686702..4689404 1 NC_009512.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 4689404 glnD 5192565 glnD Pseudomonas putida F1 PII uridylyl-transferase YP_001269496.1 4686702 D 351746 CDS YP_001269497.1 148549395 5191874 4689435..4690631 1 NC_009512.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 4690631 5191874 Pput_4189 Pseudomonas putida F1 succinyldiaminopimelate transaminase YP_001269497.1 4689435 D 351746 CDS YP_001269498.1 148549396 5191875 complement(4690737..4692383) 1 NC_009512.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; Na+/H+ antiporter 4692383 5191875 Pput_4190 Pseudomonas putida F1 Na+/H+ antiporter YP_001269498.1 4690737 R 351746 CDS YP_001269499.1 148549397 5193140 4692635..4692913 1 NC_009512.1 PFAM: plasmid maintenance system killer; plasmid maintenance system killer protein 4692913 5193140 Pput_4191 Pseudomonas putida F1 plasmid maintenance system killer protein YP_001269499.1 4692635 D 351746 CDS YP_001269500.1 148549398 5193141 4692922..4693221 1 NC_009512.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; XRE family plasmid maintenance system antidote protein 4693221 5193141 Pput_4192 Pseudomonas putida F1 XRE family plasmid maintenance system antidote protein YP_001269500.1 4692922 D 351746 CDS YP_001269501.1 148549399 5192016 4693337..4693693 1 NC_009512.1 PFAM: arsenate reductase and related; arsenate reductase-like protein 4693693 5192016 Pput_4193 Pseudomonas putida F1 arsenate reductase-like protein YP_001269501.1 4693337 D 351746 CDS YP_001269502.1 148549400 5192017 4693725..4694759 1 NC_009512.1 tetrahydrodipicolinate N-succinyltransferase-like protein 4694759 5192017 Pput_4194 Pseudomonas putida F1 tetrahydrodipicolinate N-succinyltransferase-like protein YP_001269502.1 4693725 D 351746 CDS YP_001269503.1 148549401 5192750 4694841..4696046 1 NC_009512.1 PFAM: aminotransferase, class V; class V aminotransferase 4696046 5192750 Pput_4195 Pseudomonas putida F1 class V aminotransferase YP_001269503.1 4694841 D 351746 CDS YP_001269504.1 148549402 5192751 4696043..4696453 1 NC_009512.1 PFAM: Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 4696453 5192751 Pput_4196 Pseudomonas putida F1 Fe-S metabolism associated SufE YP_001269504.1 4696043 D 351746 CDS YP_001269505.1 148549403 5192990 complement(4696562..4697371) 1 NC_009512.1 PFAM: UBA/THIF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 4697371 5192990 Pput_4197 Pseudomonas putida F1 UBA/THIF-type NAD/FAD binding protein YP_001269505.1 4696562 R 351746 CDS YP_001269506.1 148549404 5192991 4697491..4700082 1 NC_009512.1 PFAM: glycoside hydrolase, family 17; glycosyl transferase, family 2; glycosyl transferase family protein 4700082 5192991 Pput_4198 Pseudomonas putida F1 glycosyl transferase family protein YP_001269506.1 4697491 D 351746 CDS YP_001269507.1 148549405 5191845 4700273..4701424 1 NC_009512.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 4701424 5191845 Pput_4199 Pseudomonas putida F1 succinyl-diaminopimelate desuccinylase YP_001269507.1 4700273 D 351746 CDS YP_001269508.1 148549406 5191846 4701424..4702236 1 NC_009512.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; rRNA (guanine-N(1)-)-methyltransferase 4702236 5191846 Pput_4200 Pseudomonas putida F1 rRNA (guanine-N(1)-)-methyltransferase YP_001269508.1 4701424 D 351746 CDS YP_001269509.1 148549407 5193154 4702254..4702631 1 NC_009512.1 hypothetical protein 4702631 5193154 Pput_4201 Pseudomonas putida F1 hypothetical protein YP_001269509.1 4702254 D 351746 CDS YP_001269510.1 148549408 5193155 complement(4702754..4702963) 1 NC_009512.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 4702963 5193155 Pput_4202 Pseudomonas putida F1 cold-shock DNA-binding domain-containing protein YP_001269510.1 4702754 R 351746 CDS YP_001269511.1 148549409 5192554 4703197..4705683 1 NC_009512.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4705683 5192554 Pput_4203 Pseudomonas putida F1 glycerol-3-phosphate acyltransferase YP_001269511.1 4703197 D 351746 CDS YP_001269512.1 148549410 5192555 4705760..4706158 1 NC_009512.1 hypothetical protein 4706158 5192555 Pput_4204 Pseudomonas putida F1 hypothetical protein YP_001269512.1 4705760 D 351746 CDS YP_001269513.1 148549411 5192677 4706192..4706878 1 NC_009512.1 hypothetical protein 4706878 5192677 Pput_4205 Pseudomonas putida F1 hypothetical protein YP_001269513.1 4706192 D 351746 CDS YP_001269514.1 148549412 5192678 complement(4707191..4710256) 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 4710256 5192678 Pput_4206 Pseudomonas putida F1 acriflavin resistance protein YP_001269514.1 4707191 R 351746 CDS YP_001269515.1 148549413 5194469 complement(4710263..4711363) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 4711363 5194469 Pput_4207 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001269515.1 4710263 R 351746 CDS YP_001269516.1 148549414 5194470 4711614..4712255 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4712255 5194470 Pput_4208 Pseudomonas putida F1 TetR family transcriptional regulator YP_001269516.1 4711614 D 351746 CDS YP_001269517.1 148549415 5194820 complement(4712325..4713101) 1 NC_009512.1 PFAM: protein of unknown function DUF548; hypothetical protein 4713101 5194820 Pput_4209 Pseudomonas putida F1 hypothetical protein YP_001269517.1 4712325 R 351746 CDS YP_001269518.1 148549416 5194821 4713206..4713826 1 NC_009512.1 hypothetical protein 4713826 5194821 Pput_4210 Pseudomonas putida F1 hypothetical protein YP_001269518.1 4713206 D 351746 CDS YP_001269519.1 148549417 5194293 complement(4713829..4714518) 1 NC_009512.1 PFAM: Extensin family protein; extensin family protein 4714518 5194293 Pput_4211 Pseudomonas putida F1 extensin family protein YP_001269519.1 4713829 R 351746 CDS YP_001269520.1 148549418 5194294 complement(4714518..4715348) 1 NC_009512.1 PEP phosphonomutase-like protein 4715348 5194294 Pput_4212 Pseudomonas putida F1 PEP phosphonomutase-like protein YP_001269520.1 4714518 R 351746 CDS YP_001269521.1 148549419 5191535 complement(4715377..4716246) 1 NC_009512.1 PFAM: protein of unknown function DUF72; hypothetical protein 4716246 5191535 Pput_4213 Pseudomonas putida F1 hypothetical protein YP_001269521.1 4715377 R 351746 CDS YP_001269522.1 148549420 5191536 complement(4716250..4716540) 1 NC_009512.1 hypothetical protein 4716540 5191536 Pput_4214 Pseudomonas putida F1 hypothetical protein YP_001269522.1 4716250 R 351746 CDS YP_001269523.1 148549421 5192514 complement(4716672..4717346) 1 NC_009512.1 PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease 4717346 5192514 Pput_4215 Pseudomonas putida F1 peptidase M22, glycoprotease YP_001269523.1 4716672 R 351746 CDS YP_001269524.1 148549422 5192515 complement(4717618..4718268) 1 NC_009512.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 4718268 adk 5192515 adk Pseudomonas putida F1 adenylate kinase YP_001269524.1 4717618 R 351746 CDS YP_001269525.1 148549423 5194041 complement(4718526..4721153) 1 NC_009512.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4721153 5194041 Pput_4217 Pseudomonas putida F1 phosphoenolpyruvate carboxylase YP_001269525.1 4718526 R 351746 CDS YP_001269526.1 148549424 5194042 4721414..4721758 1 NC_009512.1 hypothetical protein 4721758 5194042 Pput_4218 Pseudomonas putida F1 hypothetical protein YP_001269526.1 4721414 D 351746 CDS YP_001269527.1 148549425 5190748 4722050..4722448 1 NC_009512.1 hypothetical protein 4722448 5190748 Pput_4219 Pseudomonas putida F1 hypothetical protein YP_001269527.1 4722050 D 351746 CDS YP_001269528.1 148549426 5190749 4722499..4723290 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4723290 5190749 Pput_4220 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001269528.1 4722499 D 351746 CDS YP_001269529.1 148549427 5191858 complement(4723468..4723794) 1 NC_009512.1 hypothetical protein 4723794 5191858 Pput_4221 Pseudomonas putida F1 hypothetical protein YP_001269529.1 4723468 R 351746 CDS YP_001269530.1 148549428 5191859 complement(4723791..4724651) 1 NC_009512.1 alpha/beta fold family hydrolase-like protein 4724651 5191859 Pput_4222 Pseudomonas putida F1 alpha/beta fold family hydrolase-like protein YP_001269530.1 4723791 R 351746 CDS YP_001269531.1 148549429 5192691 complement(4724686..4726014) 1 NC_009512.1 PFAM: protein of unknown function DUF1704; hypothetical protein 4726014 5192691 Pput_4223 Pseudomonas putida F1 hypothetical protein YP_001269531.1 4724686 R 351746 CDS YP_001269532.1 148549430 5192692 complement(4726103..4726651) 1 NC_009512.1 hypothetical protein 4726651 5192692 Pput_4224 Pseudomonas putida F1 hypothetical protein YP_001269532.1 4726103 R 351746 CDS YP_001269533.1 148549431 5191292 complement(4726682..4727386) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4727386 5191292 Pput_4225 Pseudomonas putida F1 TetR family transcriptional regulator YP_001269533.1 4726682 R 351746 CDS YP_001269534.1 148549432 5191293 complement(4727565..4729067) 1 NC_009512.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 4729067 lysS 5191293 lysS Pseudomonas putida F1 lysyl-tRNA synthetase YP_001269534.1 4727565 R 351746 CDS YP_001269535.1 148549433 5195103 complement(4729161..4730075) 1 NC_009512.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 4730075 5195103 Pput_4227 Pseudomonas putida F1 peptide chain release factor 2 YP_001269535.1 4729161 R 351746 CDS YP_001269536.1 148549434 5195104 complement(4730394..4731398) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 4731398 5195104 Pput_4228 Pseudomonas putida F1 response regulator receiver modulated diguanylate cyclase YP_001269536.1 4730394 R 351746 CDS YP_001269537.1 148549435 5195404 complement(4731450..4732463) 1 NC_009512.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4732463 5195404 Pput_4229 Pseudomonas putida F1 chemotaxis-specific methylesterase YP_001269537.1 4731450 R 351746 CDS YP_001269538.1 148549436 5195405 complement(4732460..4734757) 1 NC_009512.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; CheA signal transduction histidine kinase 4734757 5195405 Pput_4230 Pseudomonas putida F1 CheA signal transduction histidine kinase YP_001269538.1 4732460 R 351746 CDS YP_001269539.1 148549437 5193458 complement(4734754..4735419) 1 NC_009512.1 PFAM: CheW domain protein; putative CheW protein 4735419 5193458 Pput_4231 Pseudomonas putida F1 putative CheW protein YP_001269539.1 4734754 R 351746 CDS YP_001269540.1 148549438 5193459 complement(4735416..4736690) 1 NC_009512.1 PFAM: MCP methyltransferase, CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; protein-glutamate O-methyltransferase 4736690 5193459 Pput_4232 Pseudomonas putida F1 protein-glutamate O-methyltransferase YP_001269540.1 4735416 R 351746 CDS YP_001269541.1 148549439 5192353 complement(4736687..4737193) 1 NC_009512.1 PFAM: CheW domain protein; putative CheW protein 4737193 5192353 Pput_4233 Pseudomonas putida F1 putative CheW protein YP_001269541.1 4736687 R 351746 CDS YP_001269542.1 148549440 5192354 complement(4737199..4738821) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4738821 5192354 Pput_4234 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001269542.1 4737199 R 351746 CDS YP_001269543.1 148549441 5191051 complement(4738992..4739672) 1 NC_009512.1 PFAM: protein of unknown function DUF533; hypothetical protein 4739672 5191051 Pput_4235 Pseudomonas putida F1 hypothetical protein YP_001269543.1 4738992 R 351746 CDS YP_001269544.1 148549442 5191052 4739889..4741040 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 4741040 5191052 Pput_4236 Pseudomonas putida F1 extracellular solute-binding protein YP_001269544.1 4739889 D 351746 CDS YP_001269545.1 148549443 5194746 4741191..4742222 1 NC_009512.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4742222 5194746 Pput_4237 Pseudomonas putida F1 spermidine/putrescine ABC transporter ATPase YP_001269545.1 4741191 D 351746 CDS YP_001269546.1 148549444 5194747 4742224..4743135 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4743135 5194747 Pput_4238 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001269546.1 4742224 D 351746 CDS YP_001269547.1 148549445 5190539 4743125..4743931 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4743931 5190539 Pput_4239 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001269547.1 4743125 D 351746 CDS YP_001269548.2 161936354 5190540 4743949..4745373 1 NC_009512.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 4745373 5190540 Pput_4240 Pseudomonas putida F1 gamma-aminobutyraldehyde dehydrogenase YP_001269548.2 4743949 D 351746 CDS YP_001269549.1 148549447 5194815 4745577..4745756 1 NC_009512.1 hypothetical protein 4745756 5194815 Pput_4241 Pseudomonas putida F1 hypothetical protein YP_001269549.1 4745577 D 351746 CDS YP_001269550.1 148549448 5194816 4745753..4746085 1 NC_009512.1 PFAM: HicB family protein; HicB family protein 4746085 5194816 Pput_4242 Pseudomonas putida F1 HicB family protein YP_001269550.1 4745753 D 351746 CDS YP_001269551.1 148549449 5191238 complement(4746154..4747260) 1 NC_009512.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 4747260 5191238 Pput_4243 Pseudomonas putida F1 NADH:flavin oxidoreductase YP_001269551.1 4746154 R 351746 CDS YP_001269552.1 148549450 5191239 complement(4747731..4749440) 1 NC_009512.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ 4749440 5191239 Pput_4244 Pseudomonas putida F1 single-stranded-DNA-specific exonuclease RecJ YP_001269552.1 4747731 R 351746 CDS YP_001269553.1 148549451 5193844 complement(4749449..4749991) 1 NC_009512.1 PFAM: YaeQ family protein; YaeQ family protein 4749991 5193844 Pput_4245 Pseudomonas putida F1 YaeQ family protein YP_001269553.1 4749449 R 351746 CDS YP_001269554.1 148549452 5193845 4750122..4751321 1 NC_009512.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4751321 5193845 Pput_4246 Pseudomonas putida F1 L-carnitine dehydratase/bile acid-inducible protein F YP_001269554.1 4750122 D 351746 CDS YP_001269555.1 148549453 5192687 4751342..4752217 1 NC_009512.1 hypothetical protein 4752217 5192687 Pput_4247 Pseudomonas putida F1 hypothetical protein YP_001269555.1 4751342 D 351746 CDS YP_001269556.1 148549454 5192688 complement(4752405..4752686) 1 NC_009512.1 hypothetical protein 4752686 5192688 Pput_4248 Pseudomonas putida F1 hypothetical protein YP_001269556.1 4752405 R 351746 CDS YP_001269557.1 148549455 5190986 complement(4752766..4753185) 1 NC_009512.1 response regulator receiver protein 4753185 5190986 Pput_4249 Pseudomonas putida F1 response regulator receiver protein YP_001269557.1 4752766 R 351746 CDS YP_001269558.1 148549456 5190987 complement(4753316..4754725) 1 NC_009512.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 4754725 5190987 Pput_4250 Pseudomonas putida F1 threonine synthase YP_001269558.1 4753316 R 351746 CDS YP_001269559.1 148549457 5193568 complement(4754785..4756089) 1 NC_009512.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 4756089 5193568 Pput_4251 Pseudomonas putida F1 homoserine dehydrogenase YP_001269559.1 4754785 R 351746 CDS YP_001269560.1 148549458 5193569 complement(4756173..4756916) 1 NC_009512.1 thiol:disulfide interchange protein DsbC 4756916 5193569 Pput_4252 Pseudomonas putida F1 thiol:disulfide interchange protein DsbC YP_001269560.1 4756173 R 351746 CDS YP_001269561.1 148549459 5191344 complement(4757070..4757966) 1 NC_009512.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 4757966 xerD 5191344 xerD Pseudomonas putida F1 site-specific tyrosine recombinase XerD YP_001269561.1 4757070 R 351746 CDS YP_001269562.1 148549460 5191345 4758035..4759840 1 NC_009512.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 4759840 5191345 Pput_4254 Pseudomonas putida F1 sodium/hydrogen exchanger YP_001269562.1 4758035 D 351746 CDS YP_001269563.1 148549461 5191426 complement(4759844..4760251) 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 4760251 5191426 Pput_4255 Pseudomonas putida F1 thioesterase superfamily protein YP_001269563.1 4759844 R 351746 CDS YP_001269564.1 148549462 5191427 complement(4760346..4760696) 1 NC_009512.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 4760696 rplS 5191427 rplS Pseudomonas putida F1 50S ribosomal protein L19 YP_001269564.1 4760346 R 351746 CDS YP_001269565.1 148549463 5191543 complement(4760739..4761491) 1 NC_009512.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 4761491 trmD 5191543 trmD Pseudomonas putida F1 tRNA (guanine-N(1)-)-methyltransferase YP_001269565.1 4760739 R 351746 CDS YP_001269566.1 148549464 5191544 complement(4761495..4762031) 1 NC_009512.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 4762031 rimM 5191544 rimM Pseudomonas putida F1 16S rRNA-processing protein RimM YP_001269566.1 4761495 R 351746 CDS YP_001269567.1 148549465 5192665 complement(4762037..4762288) 1 NC_009512.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 4762288 rpsP 5192665 rpsP Pseudomonas putida F1 30S ribosomal protein S16 YP_001269567.1 4762037 R 351746 CDS YP_001269568.1 148549466 5192666 complement(4762547..4763923) 1 NC_009512.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein 4763923 5192666 Pput_4260 Pseudomonas putida F1 signal recognition particle protein YP_001269568.1 4762547 R 351746 CDS YP_001269569.1 148549467 5193596 4764194..4765045 1 NC_009512.1 PFAM: cytochrome c assembly protein; cytochrome c assembly protein 4765045 5193596 Pput_4261 Pseudomonas putida F1 cytochrome c assembly protein YP_001269569.1 4764194 D 351746 CDS YP_001269570.1 148549468 5193597 4765055..4766260 1 NC_009512.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; transporter-associated protein 4766260 5193597 Pput_4262 Pseudomonas putida F1 transporter-associated protein YP_001269570.1 4765055 D 351746 CDS YP_001269571.1 148549469 5191983 4766531..4767832 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 4767832 5191983 Pput_4263 Pseudomonas putida F1 general substrate transporter YP_001269571.1 4766531 D 351746 CDS YP_001269572.1 148549470 5191984 complement(4767972..4769153) 1 NC_009512.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 4769153 purT 5191984 purT Pseudomonas putida F1 phosphoribosylglycinamide formyltransferase 2 YP_001269572.1 4767972 R 351746 CDS YP_001269573.1 148549471 5192436 complement(4769230..4769697) 1 NC_009512.1 hypothetical protein 4769697 5192436 Pput_4265 Pseudomonas putida F1 hypothetical protein YP_001269573.1 4769230 R 351746 CDS YP_001269574.1 148549472 5192437 complement(4769894..4770097) 1 NC_009512.1 PFAM: protein of unknown function DUF1289; hypothetical protein 4770097 5192437 Pput_4266 Pseudomonas putida F1 hypothetical protein YP_001269574.1 4769894 R 351746 CDS YP_001269575.1 148549473 5194289 complement(4770087..4770611) 1 NC_009512.1 PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 4770611 5194289 Pput_4267 Pseudomonas putida F1 hexapaptide repeat-containing transferase YP_001269575.1 4770087 R 351746 CDS YP_001269576.1 148549474 5194290 complement(4770656..4771288) 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 4771288 5194290 Pput_4268 Pseudomonas putida F1 NUDIX hydrolase YP_001269576.1 4770656 R 351746 CDS YP_001269577.1 148549475 5194618 4771379..4771930 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 4771930 5194618 Pput_4269 Pseudomonas putida F1 NUDIX hydrolase YP_001269577.1 4771379 D 351746 CDS YP_001269578.1 148549476 5194619 4771953..4772507 1 NC_009512.1 hypothetical protein 4772507 5194619 Pput_4270 Pseudomonas putida F1 hypothetical protein YP_001269578.1 4771953 D 351746 CDS YP_001269579.1 148549477 5195431 4772668..4774350 1 NC_009512.1 PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 4774350 5195431 Pput_4271 Pseudomonas putida F1 polypeptide-transport-associated domain-containing protein YP_001269579.1 4772668 D 351746 CDS YP_001269580.1 148549478 5195432 4774378..4778904 1 NC_009512.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; filamentous hemagglutinin outer membrane protein 4778904 5195432 Pput_4272 Pseudomonas putida F1 filamentous hemagglutinin outer membrane protein YP_001269580.1 4774378 D 351746 CDS YP_001269581.1 148549479 5194936 complement(4779068..4779703) 1 NC_009512.1 hypothetical protein 4779703 5194936 Pput_4273 Pseudomonas putida F1 hypothetical protein YP_001269581.1 4779068 R 351746 CDS YP_001269582.1 148549480 5194937 complement(4779705..4779926) 1 NC_009512.1 hypothetical protein 4779926 5194937 Pput_4274 Pseudomonas putida F1 hypothetical protein YP_001269582.1 4779705 R 351746 CDS YP_001269583.1 148549481 5194584 4780090..4782147 1 NC_009512.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 4782147 5194584 Pput_4275 Pseudomonas putida F1 TonB-dependent receptor YP_001269583.1 4780090 D 351746 CDS YP_001269584.1 148549482 5194585 4782443..4783777 1 NC_009512.1 PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 4783777 5194585 Pput_4276 Pseudomonas putida F1 carbohydrate-selective porin OprB YP_001269584.1 4782443 D 351746 CDS YP_001269585.1 148549483 5194528 4783808..4786219 1 NC_009512.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 4786219 5194528 Pput_4277 Pseudomonas putida F1 Pyrrolo-quinoline quinone YP_001269585.1 4783808 D 351746 CDS YP_001269586.1 148549484 5194529 4786749..4789166 1 NC_009512.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 4789166 5194529 Pput_4278 Pseudomonas putida F1 ATP-dependent protease La YP_001269586.1 4786749 D 351746 CDS YP_001269587.1 148549485 5194766 4789318..4789710 1 NC_009512.1 secreted protein-like protein 4789710 5194766 Pput_4279 Pseudomonas putida F1 secreted protein-like protein YP_001269587.1 4789318 D 351746 CDS YP_001269588.1 148549486 5194767 4789800..4790543 1 NC_009512.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 4790543 5194767 Pput_4280 Pseudomonas putida F1 putative methyltransferase YP_001269588.1 4789800 D 351746 CDS YP_001269589.1 148549487 5193080 4790540..4791496 1 NC_009512.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 4791496 5193080 Pput_4281 Pseudomonas putida F1 putative methyltransferase YP_001269589.1 4790540 D 351746 CDS YP_001269590.1 148549488 5193081 complement(4791566..4791769) 1 NC_009512.1 hypothetical protein 4791769 5193081 Pput_4282 Pseudomonas putida F1 hypothetical protein YP_001269590.1 4791566 R 351746 CDS YP_001269591.1 148549489 5191496 4792079..4792753 1 NC_009512.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 4792753 5191496 Pput_4283 Pseudomonas putida F1 two component heavy metal response transcriptional regulator YP_001269591.1 4792079 D 351746 CDS YP_001269592.1 148549490 5191497 4792750..4794132 1 NC_009512.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 4794132 5191497 Pput_4284 Pseudomonas putida F1 heavy metal sensor signal transduction histidine kinase YP_001269592.1 4792750 D 351746 CDS YP_001269593.1 148549491 5193414 complement(4794258..4794980) 1 NC_009512.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 4794980 5193414 Pput_4285 Pseudomonas putida F1 pyridoxine 5'-phosphate synthase YP_001269593.1 4794258 R 351746 CDS YP_001269594.1 148549492 5193415 complement(4795042..4795725) 1 NC_009512.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 4795725 recO 5193415 recO Pseudomonas putida F1 DNA repair protein RecO YP_001269594.1 4795042 R 351746 CDS YP_001269595.1 148549493 5190264 complement(4795895..4796797) 1 NC_009512.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 4796797 era 5190264 era Pseudomonas putida F1 GTP-binding protein Era YP_001269595.1 4795895 R 351746 CDS YP_001269596.1 148549494 5190265 complement(4796790..4797479) 1 NC_009512.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 4797479 rnc 5190265 rnc Pseudomonas putida F1 ribonuclease III YP_001269596.1 4796790 R 351746 CDS YP_001269597.1 148549495 5192891 complement(4797643..4798497) 1 NC_009512.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 4798497 5192891 Pput_4289 Pseudomonas putida F1 signal peptidase I YP_001269597.1 4797643 R 351746 CDS YP_001269598.1 148549496 5192892 complement(4798503..4800293) 1 NC_009512.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 4800293 5192892 Pput_4290 Pseudomonas putida F1 GTP-binding protein LepA YP_001269598.1 4798503 R 351746 CDS YP_001269599.1 148549497 5191318 complement(4800483..4801916) 1 NC_009512.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4801916 5191318 Pput_4291 Pseudomonas putida F1 protease Do YP_001269599.1 4800483 R 351746 CDS YP_001269600.1 148549498 5191319 complement(4802092..4803057) 1 NC_009512.1 PFAM: MucB/RseB family protein; sigma E regulatory protein MucB/RseB 4803057 5191319 Pput_4292 Pseudomonas putida F1 sigma E regulatory protein MucB/RseB YP_001269600.1 4802092 R 351746 CDS YP_001269601.1 148549499 5192288 complement(4803070..4803660) 1 NC_009512.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; anti sigma-E protein RseA 4803660 5192288 Pput_4293 Pseudomonas putida F1 anti sigma-E protein RseA YP_001269601.1 4803070 R 351746 CDS YP_001269602.1 148549500 5192289 complement(4803694..4804275) 1 NC_009512.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 4804275 algU 5192289 algU Pseudomonas putida F1 RNA polymerase sigma factor AlgU YP_001269602.1 4803694 R 351746 CDS YP_001269603.1 148549501 5191121 4804711..4806315 1 NC_009512.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 4806315 5191121 Pput_4295 Pseudomonas putida F1 L-aspartate oxidase YP_001269603.1 4804711 D 351746 CDS YP_001269604.1 148549502 5191122 complement(4806434..4806892) 1 NC_009512.1 hypothetical protein 4806892 5191122 Pput_4296 Pseudomonas putida F1 hypothetical protein YP_001269604.1 4806434 R 351746 CDS YP_001269605.1 148549503 5192651 complement(4806876..4807130) 1 NC_009512.1 PFAM: protein of unknown function DUF339; hypothetical protein 4807130 5192651 Pput_4297 Pseudomonas putida F1 hypothetical protein YP_001269605.1 4806876 R 351746 CDS YP_001269606.1 148549504 5192652 4807264..4808205 1 NC_009512.1 PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 4808205 5192652 Pput_4298 Pseudomonas putida F1 glycine cleavage T protein (aminomethyl transferase) YP_001269606.1 4807264 D 351746 CDS YP_001269607.1 148549505 5190619 4808255..4809067 1 NC_009512.1 PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein 4809067 5190619 Pput_4299 Pseudomonas putida F1 putative signal transduction protein YP_001269607.1 4808255 D 351746 CDS YP_001269608.1 148549506 5190620 complement(4809133..4810512) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; integral membrane sensor signal transduction histidine kinase 4810512 5190620 Pput_4300 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001269608.1 4809133 R 351746 CDS YP_001269609.1 148549507 5193422 complement(4810505..4811176) 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 4811176 5193422 Pput_4301 Pseudomonas putida F1 two component transcriptional regulator YP_001269609.1 4810505 R 351746 CDS YP_001269610.1 148549508 5193423 4811377..4812666 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 4812666 5193423 Pput_4302 Pseudomonas putida F1 outer membrane porin YP_001269610.1 4811377 D 351746 CDS YP_001269611.1 148549509 5192617 4812713..4813693 1 NC_009512.1 PFAM: Uncharacterized protein UPF0065; hypothetical protein 4813693 5192617 Pput_4303 Pseudomonas putida F1 hypothetical protein YP_001269611.1 4812713 D 351746 CDS YP_001269612.1 148549510 5192618 4813893..4814351 1 NC_009512.1 hypothetical protein 4814351 5192618 Pput_4304 Pseudomonas putida F1 hypothetical protein YP_001269612.1 4813893 D 351746 CDS YP_001269613.1 148549511 5192351 4814353..4815867 1 NC_009512.1 PFAM: protein of unknown function DUF112, transmembrane; hypothetical protein 4815867 5192351 Pput_4305 Pseudomonas putida F1 hypothetical protein YP_001269613.1 4814353 D 351746 CDS YP_001269614.1 148549512 5192352 4815860..4816915 1 NC_009512.1 PFAM: putative ammonia monooxygenase; putative ammonia monooxygenase 4816915 5192352 Pput_4306 Pseudomonas putida F1 putative ammonia monooxygenase YP_001269614.1 4815860 D 351746 CDS YP_001269615.1 148549513 5193994 4817006..4818688 1 NC_009512.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; 5'-nucleotidase domain-containing protein 4818688 5193994 Pput_4307 Pseudomonas putida F1 5'-nucleotidase domain-containing protein YP_001269615.1 4817006 D 351746 CDS YP_001269616.1 148549514 5193995 complement(4818715..4819407) 1 NC_009512.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4819407 5193995 Pput_4308 Pseudomonas putida F1 uracil-DNA glycosylase YP_001269616.1 4818715 R 351746 CDS YP_001269617.1 148549515 5190387 4819534..4820640 1 NC_009512.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4820640 5190387 Pput_4309 Pseudomonas putida F1 enoyl-CoA hydratase/isomerase YP_001269617.1 4819534 D 351746 CDS YP_001269618.1 148549516 5190388 complement(4820685..4821134) 1 NC_009512.1 hypothetical protein 4821134 5190388 Pput_4310 Pseudomonas putida F1 hypothetical protein YP_001269618.1 4820685 R 351746 CDS YP_001269619.1 148549517 5191029 4821347..4822828 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 4822828 5191029 Pput_4311 Pseudomonas putida F1 diguanylate cyclase YP_001269619.1 4821347 D 351746 CDS YP_001269620.1 148549518 5191030 4822821..4823033 1 NC_009512.1 hypothetical protein 4823033 5191030 Pput_4312 Pseudomonas putida F1 hypothetical protein YP_001269620.1 4822821 D 351746 CDS YP_001269621.1 148549519 5192794 4823042..4823740 1 NC_009512.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; pseudouridine synthase 4823740 5192794 Pput_4313 Pseudomonas putida F1 pseudouridine synthase YP_001269621.1 4823042 D 351746 CDS YP_001269622.1 148549520 5193358 4824076..4824963 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4824963 5193358 Pput_4315 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001269622.1 4824076 D 351746 CDS YP_001269623.1 148549521 5193359 4825359..4827065 1 NC_009512.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 4827065 5193359 Pput_4316 Pseudomonas putida F1 sulfate transporter YP_001269623.1 4825359 D 351746 CDS YP_001269624.1 148549522 5192761 4827268..4828278 1 NC_009512.1 hypothetical protein 4828278 5192761 Pput_4317 Pseudomonas putida F1 hypothetical protein YP_001269624.1 4827268 D 351746 CDS YP_001269625.1 148549523 5193354 complement(4828312..4829526) 1 NC_009512.1 hypothetical protein 4829526 5193354 Pput_4318 Pseudomonas putida F1 hypothetical protein YP_001269625.1 4828312 R 351746 CDS YP_001269626.1 148549524 5193355 complement(4829692..4830309) 1 NC_009512.1 PFAM: protein of unknown function DUF477; hypothetical protein 4830309 5193355 Pput_4319 Pseudomonas putida F1 hypothetical protein YP_001269626.1 4829692 R 351746 CDS YP_001269627.1 148549525 5190888 4830496..4832787 1 NC_009512.1 PFAM: glycoside hydrolase, family 3 domain protein; glycoside hydrolase family protein 4832787 5190888 Pput_4320 Pseudomonas putida F1 glycoside hydrolase family protein YP_001269627.1 4830496 D 351746 CDS YP_001269628.1 148549526 5190889 4832875..4834632 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 4834632 5190889 Pput_4321 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001269628.1 4832875 D 351746 CDS YP_001269629.1 148549527 5193764 4834626..4835960 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 4835960 5193764 Pput_4322 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001269629.1 4834626 D 351746 CDS YP_001269630.1 148549528 5193765 4836215..4837534 1 NC_009512.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily metabolite/H(+) symporter 4837534 5193765 Pput_4323 Pseudomonas putida F1 major facilitator superfamily metabolite/H(+) symporter YP_001269630.1 4836215 D 351746 CDS YP_001269631.1 148549529 5193610 4837835..4838200 1 NC_009512.1 hypothetical protein 4838200 5193610 Pput_4324 Pseudomonas putida F1 hypothetical protein YP_001269631.1 4837835 D 351746 CDS YP_001269632.1 148549530 5193611 4838320..4838925 1 NC_009512.1 hypothetical protein 4838925 5193611 Pput_4325 Pseudomonas putida F1 hypothetical protein YP_001269632.1 4838320 D 351746 CDS YP_001269633.1 148549531 5195126 complement(4838926..4839159) 1 NC_009512.1 hypothetical protein 4839159 5195126 Pput_4326 Pseudomonas putida F1 hypothetical protein YP_001269633.1 4838926 R 351746 CDS YP_001269634.1 148549532 5195127 complement(4839209..4839502) 1 NC_009512.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4839502 5195127 Pput_4327 Pseudomonas putida F1 antibiotic biosynthesis monooxygenase YP_001269634.1 4839209 R 351746 CDS YP_001269635.1 148549533 5195097 4839705..4840625 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator 4840625 5195097 Pput_4328 Pseudomonas putida F1 AraC-like transcriptional regulator YP_001269635.1 4839705 D 351746 CDS YP_001269636.1 148549534 5195098 complement(4840749..4842386) 1 NC_009512.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; hypothetical protein 4842386 5195098 Pput_4329 Pseudomonas putida F1 hypothetical protein YP_001269636.1 4840749 R 351746 CDS YP_001269637.1 148549535 5193766 4842306..4842401 1 NC_009512.1 hypothetical protein 4842401 5193766 Pput_4330 Pseudomonas putida F1 hypothetical protein YP_001269637.1 4842306 D 351746 CDS YP_001269638.1 148549536 5193767 4842501..4843376 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4843376 5193767 Pput_4331 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269638.1 4842501 D 351746 CDS YP_001269639.1 148549537 5190592 complement(4843396..4844010) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; NAD-dependent epimerase/dehydratase 4844010 5190592 Pput_4332 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001269639.1 4843396 R 351746 CDS YP_001269640.1 148549538 5190593 4844194..4845102 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4845102 5190593 Pput_4333 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269640.1 4844194 D 351746 CDS YP_001269641.1 148549539 5193550 complement(4845335..4846204) 1 NC_009512.1 PEP phosphonomutase-like protein 4846204 5193550 Pput_4334 Pseudomonas putida F1 PEP phosphonomutase-like protein YP_001269641.1 4845335 R 351746 CDS YP_001269642.1 148549540 5193551 4846585..4848036 1 NC_009512.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4848036 5193551 Pput_4335 Pseudomonas putida F1 EmrB/QacA family drug resistance transporter YP_001269642.1 4846585 D 351746 CDS YP_001269643.1 148549541 5194945 complement(4848148..4848780) 1 NC_009512.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; TetR family transcriptional regulator 4848780 5194945 Pput_4336 Pseudomonas putida F1 TetR family transcriptional regulator YP_001269643.1 4848148 R 351746 CDS YP_001269644.1 148549542 5194946 4849038..4850192 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 4850192 5194946 Pput_4337 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001269644.1 4849038 D 351746 CDS YP_001269645.1 148549543 5195155 4850196..4853348 1 NC_009512.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4853348 5195155 Pput_4338 Pseudomonas putida F1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001269645.1 4850196 D 351746 CDS YP_001269646.1 148549544 5195156 4853345..4854799 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4854799 5195156 Pput_4339 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001269646.1 4853345 D 351746 CDS YP_001269647.1 148549545 5190844 4855202..4856458 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 4856458 5190844 Pput_4340 Pseudomonas putida F1 outer membrane porin YP_001269647.1 4855202 D 351746 CDS YP_001269648.1 148549546 5190845 4856702..4857226 1 NC_009512.1 PFAM: protein of unknown function DUF962; hypothetical protein 4857226 5190845 Pput_4341 Pseudomonas putida F1 hypothetical protein YP_001269648.1 4856702 D 351746 CDS YP_001269649.1 148549547 5194079 complement(4857280..4857672) 1 NC_009512.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 4857672 5194079 Pput_4342 Pseudomonas putida F1 4-carboxymuconolactone decarboxylase YP_001269649.1 4857280 R 351746 CDS YP_001269650.1 148549548 5194080 complement(4857683..4858474) 1 NC_009512.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; 3-oxoadipate enol-lactonase 4858474 5194080 Pput_4343 Pseudomonas putida F1 3-oxoadipate enol-lactonase YP_001269650.1 4857683 R 351746 CDS YP_001269651.1 148549549 5194465 complement(4858486..4859838) 1 NC_009512.1 Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 4859838 5194465 Pput_4344 Pseudomonas putida F1 3-carboxy-cis,cis-muconate cycloisomerase YP_001269651.1 4858486 R 351746 CDS YP_001269652.1 148549550 5194466 complement(4859848..4861137) 1 NC_009512.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily metabolite/H(+) symporter 4861137 5194466 Pput_4345 Pseudomonas putida F1 major facilitator superfamily metabolite/H(+) symporter YP_001269652.1 4859848 R 351746 CDS YP_001269653.1 148549551 5191270 complement(4861325..4862527) 1 NC_009512.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 4862527 5191270 Pput_4346 Pseudomonas putida F1 beta-ketoadipyl CoA thiolase YP_001269653.1 4861325 R 351746 CDS YP_001269654.1 148549552 5191271 complement(4862854..4864200) 1 NC_009512.1 TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; benzoate transport 4864200 5191271 Pput_4347 Pseudomonas putida F1 benzoate transport YP_001269654.1 4862854 R 351746 CDS YP_001269655.1 148549553 5193721 complement(4864521..4865396) 1 NC_009512.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; beta-ketoadipate pathway transcriptional regulator 4865396 5193721 Pput_4348 Pseudomonas putida F1 beta-ketoadipate pathway transcriptional regulator YP_001269655.1 4864521 R 351746 CDS YP_001269656.1 148549554 5193722 4865875..4866075 1 NC_009512.1 hypothetical protein 4866075 5193722 Pput_4349 Pseudomonas putida F1 hypothetical protein YP_001269656.1 4865875 D 351746 CDS YP_001269657.1 148549555 5193152 4866370..4867863 1 NC_009512.1 PFAM: phosphate transporter; phosphate transporter 4867863 5193152 Pput_4350 Pseudomonas putida F1 phosphate transporter YP_001269657.1 4866370 D 351746 CDS YP_001269658.1 148549556 5193153 complement(4867969..4869444) 1 NC_009512.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 4869444 5193153 Pput_4351 Pseudomonas putida F1 hypothetical protein YP_001269658.1 4867969 R 351746 CDS YP_001269659.1 148549557 5194307 4869614..4871488 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4871488 5194307 Pput_4352 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001269659.1 4869614 D 351746 CDS YP_001269660.1 148549558 5194308 4871654..4872775 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4872775 5194308 Pput_4353 Pseudomonas putida F1 group 1 glycosyl transferase YP_001269660.1 4871654 D 351746 CDS YP_001269661.1 148549559 5193572 4872768..4873532 1 NC_009512.1 hypothetical protein 4873532 5193572 Pput_4354 Pseudomonas putida F1 hypothetical protein YP_001269661.1 4872768 D 351746 CDS YP_001269662.1 148549560 5193573 4873529..4874521 1 NC_009512.1 PFAM: conserved hypothetical protein 374; hypothetical protein 4874521 5193573 Pput_4355 Pseudomonas putida F1 hypothetical protein YP_001269662.1 4873529 D 351746 CDS YP_001269663.1 148549561 5194690 complement(4874753..4875604) 1 NC_009512.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4875604 purU 5194690 purU Pseudomonas putida F1 formyltetrahydrofolate deformylase YP_001269663.1 4874753 R 351746 CDS YP_001269664.1 148549562 5194691 4875889..4876266 1 NC_009512.1 hypothetical protein 4876266 5194691 Pput_4357 Pseudomonas putida F1 hypothetical protein YP_001269664.1 4875889 D 351746 CDS YP_001269665.1 148549563 5193272 4876238..4876354 1 NC_009512.1 hypothetical protein 4876354 5193272 Pput_4358 Pseudomonas putida F1 hypothetical protein YP_001269665.1 4876238 D 351746 CDS YP_001269666.1 148549564 5193273 complement(4876339..4877772) 1 NC_009512.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 4877772 sbcB 5193273 sbcB Pseudomonas putida F1 exonuclease I YP_001269666.1 4876339 R 351746 CDS YP_001269667.1 148549565 5191506 complement(4877830..4878189) 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 4878189 5191506 Pput_4360 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001269667.1 4877830 R 351746 CDS YP_001269668.1 148549566 5191507 complement(4878313..4878699) 1 NC_009512.1 hypothetical protein 4878699 5191507 Pput_4361 Pseudomonas putida F1 hypothetical protein YP_001269668.1 4878313 R 351746 CDS YP_001269669.1 148549567 5193891 4878880..4880334 1 NC_009512.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4880334 5193891 Pput_4362 Pseudomonas putida F1 pyruvate kinase YP_001269669.1 4878880 D 351746 CDS YP_001269670.1 148549568 5193892 complement(4880461..4882101) 1 NC_009512.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4882101 groEL 5193892 groEL Pseudomonas putida F1 chaperonin GroEL YP_001269670.1 4880461 R 351746 CDS YP_001269671.1 148549569 5195406 complement(4882152..4882445) 1 NC_009512.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4882445 groES 5195406 groES Pseudomonas putida F1 co-chaperonin GroES YP_001269671.1 4882152 R 351746 CDS YP_001269672.1 148549570 5195407 complement(4882689..4883150) 1 NC_009512.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4883150 fxsA 5195407 fxsA Pseudomonas putida F1 FxsA protein YP_001269672.1 4882689 R 351746 CDS YP_001269673.1 148549571 5191262 complement(4883216..4883947) 1 NC_009512.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 4883947 5191262 Pput_4366 Pseudomonas putida F1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001269673.1 4883216 R 351746 CDS YP_001269674.1 148549572 5191263 complement(4884030..4885040) 1 NC_009512.1 hypothetical protein 4885040 5191263 Pput_4367 Pseudomonas putida F1 hypothetical protein YP_001269674.1 4884030 R 351746 CDS YP_001269675.1 148549573 5193703 4885205..4885558 1 NC_009512.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 4885558 5193703 Pput_4368 Pseudomonas putida F1 methylated-DNA--protein-cysteine methyltransferase YP_001269675.1 4885205 D 351746 CDS YP_001269676.1 148549574 5193704 4885602..4887149 1 NC_009512.1 TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; AmpG-related permease 4887149 5193704 Pput_4369 Pseudomonas putida F1 AmpG-related permease YP_001269676.1 4885602 D 351746 CDS YP_001269677.1 148549575 5193789 complement(4887310..4888551) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4888551 5193789 Pput_4370 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269677.1 4887310 R 351746 CDS YP_001269678.1 148549576 5193790 complement(4888762..4889604) 1 NC_009512.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4889604 5193790 Pput_4371 Pseudomonas putida F1 mechanosensitive ion channel protein MscS YP_001269678.1 4888762 R 351746 CDS YP_001269679.1 148549577 5193069 complement(4889721..4890206) 1 NC_009512.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 4890206 5193069 Pput_4372 Pseudomonas putida F1 putative nucleotide-binding protein YP_001269679.1 4889721 R 351746 CDS YP_001269680.1 148549578 5193070 4890307..4891224 1 NC_009512.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 4891224 5193070 Pput_4373 Pseudomonas putida F1 2-dehydropantoate 2-reductase YP_001269680.1 4890307 D 351746 CDS YP_001269681.1 148549579 5194708 4891262..4893292 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4893292 5194708 Pput_4374 Pseudomonas putida F1 multi-sensor signal transduction histidine kinase YP_001269681.1 4891262 D 351746 CDS YP_001269682.1 148549580 5194709 4893294..4893860 1 NC_009512.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 4893860 5194709 Pput_4375 Pseudomonas putida F1 ATP--cobalamin adenosyltransferase YP_001269682.1 4893294 D 351746 CDS YP_001269683.1 148549581 5193400 complement(4893999..4894943) 1 NC_009512.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; hypothetical protein 4894943 5193400 Pput_4376 Pseudomonas putida F1 hypothetical protein YP_001269683.1 4893999 R 351746 CDS YP_001269684.1 148549582 5193401 complement(4894940..4895572) 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 4895572 5193401 Pput_4377 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001269684.1 4894940 R 351746 CDS YP_001269685.1 148549583 5190564 complement(4895728..4896945) 1 NC_009512.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 4896945 argJ 5190564 argJ Pseudomonas putida F1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001269685.1 4895728 R 351746 CDS YP_001269686.1 148549584 5190565 complement(4897128..4899947) 1 NC_009512.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 4899947 secA 5190565 secA Pseudomonas putida F1 preprotein translocase subunit SecA YP_001269686.1 4897128 R 351746 CDS YP_001269687.1 148549585 5194602 4900062..4900691 1 NC_009512.1 hypothetical protein 4900691 5194602 Pput_4380 Pseudomonas putida F1 hypothetical protein YP_001269687.1 4900062 D 351746 CDS YP_001269688.1 148549586 5194603 complement(4900739..4901650) 1 NC_009512.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4901650 lpxC 5194603 lpxC Pseudomonas putida F1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001269688.1 4900739 R 351746 CDS YP_001269689.1 148549587 5191146 complement(4901763..4902959) 1 NC_009512.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 4902959 5191146 Pput_4382 Pseudomonas putida F1 cell division protein FtsZ YP_001269689.1 4901763 R 351746 CDS YP_001269690.1 148549588 5191147 complement(4903015..4904277) 1 NC_009512.1 PFAM: cell division protein FtsA; cell division protein FtsA 4904277 5191147 Pput_4383 Pseudomonas putida F1 cell division protein FtsA YP_001269690.1 4903015 R 351746 CDS YP_001269691.1 148549589 5195009 complement(4904292..4905161) 1 NC_009512.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 4905161 5195009 Pput_4384 Pseudomonas putida F1 polypeptide-transport-associated domain-containing protein YP_001269691.1 4904292 R 351746 CDS YP_001269692.1 148549590 5195010 complement(4905167..4906123) 1 NC_009512.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 4906123 ddl 5195010 ddl Pseudomonas putida F1 D-alanine--D-alanine ligase YP_001269692.1 4905167 R 351746 CDS YP_001269693.1 148549591 5195139 complement(4906120..4907568) 1 NC_009512.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 4907568 murC 5195139 murC Pseudomonas putida F1 UDP-N-acetylmuramate--L-alanine ligase YP_001269693.1 4906120 R 351746 CDS YP_001269694.1 148549592 5195140 complement(4907561..4908640) 1 NC_009512.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 4908640 murG 5195140 murG Pseudomonas putida F1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001269694.1 4907561 R 351746 CDS YP_001269695.1 148549593 5194714 complement(4908630..4909844) 1 NC_009512.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW 4909844 5194714 Pput_4388 Pseudomonas putida F1 cell division protein FtsW YP_001269695.1 4908630 R 351746 CDS YP_001269696.1 148549594 5194715 complement(4909841..4911193) 1 NC_009512.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 4911193 murD 5194715 murD Pseudomonas putida F1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001269696.1 4909841 R 351746 CDS YP_001269697.1 148549595 5194730 complement(4911194..4912276) 1 NC_009512.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 4912276 mraY 5194730 mraY Pseudomonas putida F1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001269697.1 4911194 R 351746 CDS YP_001269698.1 148549596 5194731 complement(4912276..4913643) 1 NC_009512.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 4913643 5194731 Pput_4391 Pseudomonas putida F1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001269698.1 4912276 R 351746 CDS YP_001269699.1 148549597 5191739 complement(4913636..4915126) 1 NC_009512.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 4915126 murE 5191739 murE Pseudomonas putida F1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001269699.1 4913636 R 351746 CDS YP_001269700.1 148549598 5191740 complement(4915123..4916871) 1 NC_009512.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 4916871 5191740 Pput_4393 Pseudomonas putida F1 peptidoglycan glycosyltransferase YP_001269700.1 4915123 R 351746 CDS YP_001269701.1 148549599 5191041 complement(4916868..4917161) 1 NC_009512.1 PFAM: cell division protein FtsL; cell division protein FtsL 4917161 5191041 Pput_4394 Pseudomonas putida F1 cell division protein FtsL YP_001269701.1 4916868 R 351746 CDS YP_001269702.1 148549600 5191042 complement(4917158..4918105) 1 NC_009512.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 4918105 mraW 5191042 mraW Pseudomonas putida F1 S-adenosyl-methyltransferase MraW YP_001269702.1 4917158 R 351746 CDS YP_001269703.1 148549601 5190633 complement(4918102..4918557) 1 NC_009512.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 4918557 5190633 Pput_4396 Pseudomonas putida F1 cell division protein MraZ YP_001269703.1 4918102 R 351746 CDS YP_001269704.1 148549602 5195002 complement(4919309..4920184) 1 NC_009512.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 4920184 5195002 Pput_4398 Pseudomonas putida F1 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001269704.1 4919309 R 351746 CDS YP_001269705.1 148549603 5194848 4920371..4922188 1 NC_009512.1 PFAM: LppC family lipoprotein; LppC family lipoprotein 4922188 5194848 Pput_4399 Pseudomonas putida F1 LppC family lipoprotein YP_001269705.1 4920371 D 351746 CDS YP_001269706.1 148549604 5194849 4922188..4922559 1 NC_009512.1 PFAM: protein of unknown function UPF0102; hypothetical protein 4922559 5194849 Pput_4400 Pseudomonas putida F1 hypothetical protein YP_001269706.1 4922188 D 351746 CDS YP_001269707.1 148549605 5193831 4922646..4923239 1 NC_009512.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4923239 gmhA 5193831 gmhA Pseudomonas putida F1 phosphoheptose isomerase YP_001269707.1 4922646 D 351746 CDS YP_001269708.1 148549606 5193832 4923236..4923814 1 NC_009512.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 4923814 5193832 Pput_4402 Pseudomonas putida F1 transport-associated protein YP_001269708.1 4923236 D 351746 CDS YP_001269709.1 148549607 5193673 complement(4923874..4924305) 1 NC_009512.1 PFAM: Stringent starvation protein B; ClpXP protease specificity-enhancing factor 4924305 5193673 Pput_4403 Pseudomonas putida F1 ClpXP protease specificity-enhancing factor YP_001269709.1 4923874 R 351746 CDS YP_001269710.1 148549608 5193674 complement(4924316..4924939) 1 NC_009512.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 4924939 5193674 Pput_4404 Pseudomonas putida F1 glutathione S-transferase domain-containing protein YP_001269710.1 4924316 R 351746 CDS YP_001269711.1 148549609 5190892 complement(4925056..4925835) 1 NC_009512.1 ubiquinol--cytochrome c reductase, cytochrome c1 4925835 5190892 Pput_4405 Pseudomonas putida F1 ubiquinol--cytochrome c reductase, cytochrome c1 YP_001269711.1 4925056 R 351746 CDS YP_001269712.1 148549610 5190893 complement(4925835..4927049) 1 NC_009512.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; cytochrome b/b6 domain-containing protein 4927049 5190893 Pput_4406 Pseudomonas putida F1 cytochrome b/b6 domain-containing protein YP_001269712.1 4925835 R 351746 CDS YP_001269713.1 148549611 5193012 complement(4927046..4927639) 1 NC_009512.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 4927639 5193012 Pput_4407 Pseudomonas putida F1 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001269713.1 4927046 R 351746 CDS YP_001269714.1 148549612 5193013 complement(4927902..4928294) 1 NC_009512.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4928294 rpsI 5193013 rpsI Pseudomonas putida F1 30S ribosomal protein S9 YP_001269714.1 4927902 R 351746 CDS YP_001269715.1 148549613 5191668 complement(4928309..4928737) 1 NC_009512.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4928737 rplM 5191668 rplM Pseudomonas putida F1 50S ribosomal protein L13 YP_001269715.1 4928309 R 351746 CDS YP_001269716.1 148549614 5191669 4928996..4930036 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 4930036 5191669 Pput_4410 Pseudomonas putida F1 aldo/keto reductase YP_001269716.1 4928996 D 351746 CDS YP_001269717.1 148549615 5194666 4930143..4931147 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4931147 5194666 Pput_4411 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001269717.1 4930143 D 351746 CDS YP_001269718.1 148549616 5194667 complement(4931254..4932348) 1 NC_009512.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 4932348 5194667 Pput_4412 Pseudomonas putida F1 AFG1 family ATPase YP_001269718.1 4931254 R 351746 CDS YP_001269719.1 148549617 5192229 complement(4932561..4933910) 1 NC_009512.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 4933910 5192229 Pput_4413 Pseudomonas putida F1 tryptophanyl-tRNA synthetase YP_001269719.1 4932561 R 351746 CDS YP_001269720.1 148549618 5192230 complement(4933935..4934570) 1 NC_009512.1 alpha/beta fold family hydrolase-like protein 4934570 5192230 Pput_4414 Pseudomonas putida F1 alpha/beta fold family hydrolase-like protein YP_001269720.1 4933935 R 351746 CDS YP_001269721.1 148549619 5190724 4934706..4935143 1 NC_009512.1 PFAM: protein of unknown function DUF1043; hypothetical protein 4935143 5190724 Pput_4415 Pseudomonas putida F1 hypothetical protein YP_001269721.1 4934706 D 351746 CDS YP_001269722.1 148549620 5190725 complement(4935307..4936503) 1 NC_009512.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 4936503 5190725 Pput_4416 Pseudomonas putida F1 methionine gamma-lyase YP_001269722.1 4935307 R 351746 CDS YP_001269723.1 148549621 5190580 4936631..4937110 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 4937110 5190580 Pput_4417 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001269723.1 4936631 D 351746 CDS YP_001269724.1 148549622 5191539 4939435..4939698 1 NC_009512.1 PFAM: Colicin immunity protein/pyocin immunity protein; colicin immunity protein/pyocin immunity protein 4939698 5191539 Pput_4420 Pseudomonas putida F1 colicin immunity protein/pyocin immunity protein YP_001269724.1 4939435 D 351746 CDS YP_001269725.1 148549623 5191540 complement(4939793..4941694) 1 NC_009512.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 4941694 5191540 Pput_4421 Pseudomonas putida F1 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_001269725.1 4939793 R 351746 CDS YP_001269726.1 148549624 5190477 complement(4941711..4942628) 1 NC_009512.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 4942628 5190477 Pput_4422 Pseudomonas putida F1 sulfate adenylyltransferase subunit 2 YP_001269726.1 4941711 R 351746 CDS YP_001269727.1 148549625 5190478 complement(4942852..4943610) 1 NC_009512.1 PFAM: protein of unknown function DUF34; hypothetical protein 4943610 5190478 Pput_4423 Pseudomonas putida F1 hypothetical protein YP_001269727.1 4942852 R 351746 CDS YP_001269728.1 148549626 5190273 4943779..4944939 1 NC_009512.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; 2-alkenal reductase 4944939 5190273 Pput_4424 Pseudomonas putida F1 2-alkenal reductase YP_001269728.1 4943779 D 351746 CDS YP_001269729.1 148549627 5190274 complement(4945111..4945875) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4945875 5190274 Pput_4425 Pseudomonas putida F1 ABC transporter-like protein YP_001269729.1 4945111 R 351746 CDS YP_001269730.1 148549628 5190546 complement(4945886..4946983) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 4946983 5190546 Pput_4426 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001269730.1 4945886 R 351746 CDS YP_001269731.1 148549629 5190547 complement(4946994..4948172) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 4948172 5190547 Pput_4427 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001269731.1 4946994 R 351746 CDS YP_001269732.1 148549630 5191119 complement(4948240..4949268) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 4949268 5191119 Pput_4428 Pseudomonas putida F1 extracellular solute-binding protein YP_001269732.1 4948240 R 351746 CDS YP_001269733.1 148549631 5191120 4949601..4950257 1 NC_009512.1 PFAM: phospholipase/Carboxylesterase; carboxylesterase 4950257 5191120 Pput_4429 Pseudomonas putida F1 carboxylesterase YP_001269733.1 4949601 D 351746 CDS YP_001269734.1 148549632 5192033 4950358..4951800 1 NC_009512.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4951800 5192033 Pput_4430 Pseudomonas putida F1 ATP-dependent RNA helicase RhlB YP_001269734.1 4950358 D 351746 CDS YP_001269735.1 148549633 5192034 complement(4952373..4952819) 1 NC_009512.1 PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis protein MoaE 4952819 5192034 Pput_4431 Pseudomonas putida F1 molybdopterin biosynthesis protein MoaE YP_001269735.1 4952373 R 351746 CDS YP_001269736.1 148549634 5190373 complement(4952822..4953067) 1 NC_009512.1 TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 4953067 5190373 Pput_4432 Pseudomonas putida F1 molybdopterin converting factor subunit 1 YP_001269736.1 4952822 R 351746 CDS YP_001269737.1 148549635 5190374 complement(4953067..4953654) 1 NC_009512.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 4953654 moaC 5190374 moaC Pseudomonas putida F1 molybdenum cofactor biosynthesis protein MoaC YP_001269737.1 4953067 R 351746 CDS YP_001269738.1 148549636 5190822 complement(4953733..4955127) 1 NC_009512.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; PhoH family protein 4955127 5190822 Pput_4434 Pseudomonas putida F1 PhoH family protein YP_001269738.1 4953733 R 351746 CDS YP_001269739.1 148549637 5190823 complement(4955409..4956536) 1 NC_009512.1 PFAM: polysaccharide deacetylase; polysaccharide deacetylase 4956536 5190823 Pput_4435 Pseudomonas putida F1 polysaccharide deacetylase YP_001269739.1 4955409 R 351746 CDS YP_001269740.1 148549638 5193576 4956674..4957453 1 NC_009512.1 PFAM: protein of unknown function DUF328; hypothetical protein 4957453 5193576 Pput_4436 Pseudomonas putida F1 hypothetical protein YP_001269740.1 4956674 D 351746 CDS YP_001269741.1 148549639 5193577 4958291..4959607 1 NC_009512.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; GDP-mannose 6-dehydrogenase 4959607 5193577 Pput_4437 Pseudomonas putida F1 GDP-mannose 6-dehydrogenase YP_001269741.1 4958291 D 351746 CDS YP_001269742.1 148549640 5191895 4959685..4961175 1 NC_009512.1 hypothetical protein 4961175 5191895 Pput_4438 Pseudomonas putida F1 hypothetical protein YP_001269742.1 4959685 D 351746 CDS YP_001269743.1 148549641 5191896 4961213..4962379 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 4962379 5191896 Pput_4439 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001269743.1 4961213 D 351746 CDS YP_001269744.1 148549642 5195147 4962390..4963823 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4963823 5195147 Pput_4440 Pseudomonas putida F1 Sel1 domain-containing protein YP_001269744.1 4962390 D 351746 CDS YP_001269745.1 148549643 5195148 4963820..4965298 1 NC_009512.1 outer membrane protein AlgE 4965298 5195148 Pput_4441 Pseudomonas putida F1 outer membrane protein AlgE YP_001269745.1 4963820 D 351746 CDS YP_001269746.1 148549644 5192611 4965321..4966880 1 NC_009512.1 SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; carbohydrate-binding and sugar hydrolysis protein 4966880 5192611 Pput_4442 Pseudomonas putida F1 carbohydrate-binding and sugar hydrolysis protein YP_001269746.1 4965321 D 351746 CDS YP_001269747.1 148549645 5192612 4966894..4968333 1 NC_009512.1 alginate biosynthesis protein AlgX 4968333 5192612 Pput_4443 Pseudomonas putida F1 alginate biosynthesis protein AlgX YP_001269747.1 4966894 D 351746 CDS YP_001269748.1 148549646 5191334 4968342..4969445 1 NC_009512.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 4969445 algL 5191334 algL Pseudomonas putida F1 poly(beta-D-mannuronate) lyase YP_001269748.1 4968342 D 351746 CDS YP_001269749.1 148549647 5191335 4969644..4971101 1 NC_009512.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 4971101 5191335 Pput_4445 Pseudomonas putida F1 membrane bound O-acyl transferase, MBOAT family protein YP_001269749.1 4969644 D 351746 CDS YP_001269750.1 148549648 5192518 4971113..4972270 1 NC_009512.1 hypothetical protein 4972270 5192518 Pput_4446 Pseudomonas putida F1 hypothetical protein YP_001269750.1 4971113 D 351746 CDS YP_001269751.1 148549649 5192519 4972291..4972938 1 NC_009512.1 hypothetical protein 4972938 5192519 Pput_4447 Pseudomonas putida F1 hypothetical protein YP_001269751.1 4972291 D 351746 CDS YP_001269752.1 148549650 5192507 4972971..4974428 1 NC_009512.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 4974428 5192507 Pput_4448 Pseudomonas putida F1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001269752.1 4972971 D 351746 CDS YP_001269753.1 148549651 5192508 complement(4974468..4974920) 1 NC_009512.1 hypothetical protein 4974920 5192508 Pput_4449 Pseudomonas putida F1 hypothetical protein YP_001269753.1 4974468 R 351746 CDS YP_001269754.1 148549652 5192325 4975090..4975554 1 NC_009512.1 hypothetical protein 4975554 5192325 Pput_4450 Pseudomonas putida F1 hypothetical protein YP_001269754.1 4975090 D 351746 CDS YP_001269755.1 148549653 5192326 4975676..4976488 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 4976488 5192326 Pput_4451 Pseudomonas putida F1 short chain dehydrogenase YP_001269755.1 4975676 D 351746 CDS YP_001269756.1 148549654 5191294 complement(4976737..4978191) 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4978191 5191294 Pput_4452 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001269756.1 4976737 R 351746 CDS YP_001269757.1 148549655 5191295 complement(4978188..4979291) 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4979291 5191295 Pput_4453 Pseudomonas putida F1 secretion protein HlyD family protein YP_001269757.1 4978188 R 351746 CDS YP_001269758.1 148549656 5192516 complement(4979278..4980819) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4980819 5192516 Pput_4454 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269758.1 4979278 R 351746 CDS YP_001269759.1 148549657 5192517 complement(4980955..4981860) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4981860 5192517 Pput_4455 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269759.1 4980955 R 351746 CDS YP_001269760.1 148549658 5192447 4981984..4982529 1 NC_009512.1 PFAM: UspA domain protein; UspA domain-containing protein 4982529 5192447 Pput_4456 Pseudomonas putida F1 UspA domain-containing protein YP_001269760.1 4981984 D 351746 CDS YP_001269761.1 148549659 5192448 complement(4982601..4983461) 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4983461 5192448 Pput_4457 Pseudomonas putida F1 secretion protein HlyD family protein YP_001269761.1 4982601 R 351746 CDS YP_001269762.1 148549660 5194736 complement(4983472..4983672) 1 NC_009512.1 PFAM: protein of unknown function DUF1656; hypothetical protein 4983672 5194736 Pput_4458 Pseudomonas putida F1 hypothetical protein YP_001269762.1 4983472 R 351746 CDS YP_001269763.1 148549661 5194737 complement(4983662..4985839) 1 NC_009512.1 PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein 4985839 5194737 Pput_4459 Pseudomonas putida F1 fusaric acid resistance protein YP_001269763.1 4983662 R 351746 CDS YP_001269764.1 148549662 5190560 complement(4985836..4987365) 1 NC_009512.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4987365 5190560 Pput_4460 Pseudomonas putida F1 RND efflux system outer membrane lipoprotein YP_001269764.1 4985836 R 351746 CDS YP_001269765.1 148549663 5190561 4987558..4988505 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4988505 5190561 Pput_4461 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269765.1 4987558 D 351746 CDS YP_001269766.1 148549664 5195313 4988679..4989653 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4989653 5195313 Pput_4462 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001269766.1 4988679 D 351746 CDS YP_001269767.1 148549665 5195314 complement(4989771..4990673) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 4990673 5195314 Pput_4463 Pseudomonas putida F1 hypothetical protein YP_001269767.1 4989771 R 351746 CDS YP_001269768.1 148549666 5191322 4990859..4991734 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4991734 5191322 Pput_4464 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001269768.1 4990859 D 351746 CDS YP_001269769.1 148549667 5191323 complement(4991764..4994154) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4994154 5191323 Pput_4465 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001269769.1 4991764 R 351746 CDS YP_001269770.1 148549668 5194570 complement(4994331..4995311) 1 NC_009512.1 PFAM: FecR protein; anti-FecI sigma factor FecR 4995311 5194570 Pput_4466 Pseudomonas putida F1 anti-FecI sigma factor FecR YP_001269770.1 4994331 R 351746 CDS YP_001269771.1 148549669 5194571 complement(4995308..4995892) 1 NC_009512.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 4995892 5194571 Pput_4467 Pseudomonas putida F1 ECF subfamily RNA polymerase sigma-24 factor YP_001269771.1 4995308 R 351746 CDS YP_001269772.1 148549670 5190503 complement(4995889..4996215) 1 NC_009512.1 hypothetical protein 4996215 5190503 Pput_4468 Pseudomonas putida F1 hypothetical protein YP_001269772.1 4995889 R 351746 CDS YP_001269773.1 148549671 5190504 complement(4996215..4997792) 1 NC_009512.1 PFAM: PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 4997792 5190504 Pput_4469 Pseudomonas putida F1 PepSY-associated TM helix domain-containing protein YP_001269773.1 4996215 R 351746 CDS YP_001269774.1 148549672 5193476 complement(4997789..4998094) 1 NC_009512.1 hypothetical protein 4998094 5193476 Pput_4470 Pseudomonas putida F1 hypothetical protein YP_001269774.1 4997789 R 351746 CDS YP_001269775.1 148549673 5193477 4998351..4998698 1 NC_009512.1 hypothetical protein 4998698 5193477 Pput_4471 Pseudomonas putida F1 hypothetical protein YP_001269775.1 4998351 D 351746 CDS YP_001269776.1 148549674 5190505 4998820..4999110 1 NC_009512.1 hypothetical protein 4999110 5190505 Pput_4472 Pseudomonas putida F1 hypothetical protein YP_001269776.1 4998820 D 351746 CDS YP_001269777.1 148549675 5190506 complement(4999114..4999584) 1 NC_009512.1 PFAM: phosphate-starvation-inducible E; phosphate-starvation-inducible E 4999584 5190506 Pput_4473 Pseudomonas putida F1 phosphate-starvation-inducible E YP_001269777.1 4999114 R 351746 CDS YP_001269778.1 148549676 5194524 5000033..5000275 1 NC_009512.1 hypothetical protein 5000275 5194524 Pput_4474 Pseudomonas putida F1 hypothetical protein YP_001269778.1 5000033 D 351746 CDS YP_001269779.1 148549677 5194525 5000368..5000631 1 NC_009512.1 hypothetical protein 5000631 5194525 Pput_4475 Pseudomonas putida F1 hypothetical protein YP_001269779.1 5000368 D 351746 CDS YP_001269780.1 148549678 5193410 5000987..5001250 1 NC_009512.1 PFAM: YebG family protein; hypothetical protein 5001250 5193410 Pput_4476 Pseudomonas putida F1 hypothetical protein YP_001269780.1 5000987 D 351746 CDS YP_001269781.1 148549679 5193411 complement(5001309..5002328) 1 NC_009512.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 5002328 5193411 Pput_4477 Pseudomonas putida F1 Glu/Leu/Phe/Val dehydrogenase YP_001269781.1 5001309 R 351746 CDS YP_001269782.1 148549680 5190497 5002453..5003259 1 NC_009512.1 hypothetical protein 5003259 5190497 Pput_4478 Pseudomonas putida F1 hypothetical protein YP_001269782.1 5002453 D 351746 CDS YP_001269783.1 148549681 5190498 complement(5003253..5003885) 1 NC_009512.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; maleylacetoacetate isomerase 5003885 5190498 Pput_4479 Pseudomonas putida F1 maleylacetoacetate isomerase YP_001269783.1 5003253 R 351746 CDS YP_001269784.1 148549682 5192388 complement(5003898..5005190) 1 NC_009512.1 TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 5005190 5192388 Pput_4480 Pseudomonas putida F1 fumarylacetoacetase YP_001269784.1 5003898 R 351746 CDS YP_001269785.1 148549683 5192389 complement(5005194..5006495) 1 NC_009512.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 5006495 5192389 Pput_4481 Pseudomonas putida F1 homogentisate 1,2-dioxygenase YP_001269785.1 5005194 R 351746 CDS YP_001269786.1 148549684 5195360 5006607..5007440 1 NC_009512.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; IclR family transcriptional regulator 5007440 5195360 Pput_4482 Pseudomonas putida F1 IclR family transcriptional regulator YP_001269786.1 5006607 D 351746 CDS YP_001269787.1 148549685 5195361 complement(5007371..5010595) 1 NC_009512.1 hypothetical protein 5010595 5195361 Pput_4483 Pseudomonas putida F1 hypothetical protein YP_001269787.1 5007371 R 351746 CDS YP_001269788.1 148549686 5191332 complement(5010988..5011893) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 5011893 5191332 Pput_4484 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001269788.1 5010988 R 351746 CDS YP_001269789.1 148549687 5191333 complement(5012070..5012741) 1 NC_009512.1 PFAM: LrgB family protein; LrgB family protein 5012741 5191333 Pput_4485 Pseudomonas putida F1 LrgB family protein YP_001269789.1 5012070 R 351746 CDS YP_001269790.1 148549688 5192467 complement(5012746..5013132) 1 NC_009512.1 PFAM: LrgA family protein; LrgA family protein 5013132 5192467 Pput_4486 Pseudomonas putida F1 LrgA family protein YP_001269790.1 5012746 R 351746 CDS YP_001269791.1 148549689 5192468 5013230..5014111 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5014111 5192468 Pput_4487 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269791.1 5013230 D 351746 CDS YP_001269792.1 148549690 5193412 complement(5014133..5014588) 1 NC_009512.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 5014588 5193412 Pput_4488 Pseudomonas putida F1 flavodoxin YP_001269792.1 5014133 R 351746 CDS YP_001269793.1 148549691 5193413 5014704..5015132 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 5015132 5193413 Pput_4489 Pseudomonas putida F1 putative PAS/PAC sensor protein YP_001269793.1 5014704 D 351746 CDS YP_001269794.1 148549692 5190487 5015192..5015809 1 NC_009512.1 hypothetical protein 5015809 5190487 Pput_4490 Pseudomonas putida F1 hypothetical protein YP_001269794.1 5015192 D 351746 CDS YP_001269795.1 148549693 5190488 complement(5015794..5016729) 1 NC_009512.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 5016729 5190488 Pput_4491 Pseudomonas putida F1 MerR family transcriptional regulator YP_001269795.1 5015794 R 351746 CDS YP_001269796.1 148549694 5190939 5016950..5017510 1 NC_009512.1 hypothetical protein 5017510 5190939 Pput_4492 Pseudomonas putida F1 hypothetical protein YP_001269796.1 5016950 D 351746 CDS YP_001269797.1 148549695 5190940 5017544..5018281 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 5018281 5190940 Pput_4493 Pseudomonas putida F1 short chain dehydrogenase YP_001269797.1 5017544 D 351746 CDS YP_001269798.1 148549696 5193631 5018291..5018584 1 NC_009512.1 PFAM: protein of unknown function DUF1244; hypothetical protein 5018584 5193631 Pput_4494 Pseudomonas putida F1 hypothetical protein YP_001269798.1 5018291 D 351746 CDS YP_001269799.1 148549697 5193632 5018581..5018922 1 NC_009512.1 PFAM: HopJ type III effector protein; HopJ type III effector protein 5018922 5193632 Pput_4495 Pseudomonas putida F1 HopJ type III effector protein YP_001269799.1 5018581 D 351746 CDS YP_001269800.1 148549698 5191408 complement(5018967..5019875) 1 NC_009512.1 alpha/beta hydrolase-like protein 5019875 5191408 Pput_4496 Pseudomonas putida F1 alpha/beta hydrolase-like protein YP_001269800.1 5018967 R 351746 CDS YP_001269801.1 148549699 5191409 complement(5020019..5021230) 1 NC_009512.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 5021230 5191409 Pput_4497 Pseudomonas putida F1 trans-2-enoyl-CoA reductase YP_001269801.1 5020019 R 351746 CDS YP_001269802.1 148549700 5191582 5021532..5022710 1 NC_009512.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5022710 5191582 Pput_4498 Pseudomonas putida F1 acetyl-CoA acetyltransferase YP_001269802.1 5021532 D 351746 CDS YP_001269803.1 148549701 5191583 complement(5022849..5023673) 1 NC_009512.1 PFAM: Cobalamin-independent synthase MetE, N-terminal domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 5023673 5191583 Pput_4499 Pseudomonas putida F1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001269803.1 5022849 R 351746 CDS YP_001269804.1 148549702 5193586 5023903..5025390 1 NC_009512.1 PFAM: methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 5025390 5193586 Pput_4500 Pseudomonas putida F1 methylenetetrahydrofolate reductase YP_001269804.1 5023903 D 351746 CDS YP_001269805.1 148549703 5193587 complement(5025350..5026327) 1 NC_009512.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 5026327 5193587 Pput_4501 Pseudomonas putida F1 cobalamin synthesis protein, P47K YP_001269805.1 5025350 R 351746 CDS YP_001269806.1 148549704 5194358 complement(5026405..5026602) 1 NC_009512.1 PFAM: protein of unknown function DUF466; hypothetical protein 5026602 5194358 Pput_4502 Pseudomonas putida F1 hypothetical protein YP_001269806.1 5026405 R 351746 CDS YP_001269807.1 148549705 5194359 complement(5026620..5028686) 1 NC_009512.1 PFAM: carbon starvation protein CstA; carbon starvation protein CstA 5028686 5194359 Pput_4503 Pseudomonas putida F1 carbon starvation protein CstA YP_001269807.1 5026620 R 351746 CDS YP_001269808.1 148549706 5192194 5028863..5029225 1 NC_009512.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 5029225 5192194 Pput_4504 Pseudomonas putida F1 type IV pilus assembly PilZ YP_001269808.1 5028863 D 351746 CDS YP_001269809.1 148549707 5192195 5029489..5031006 1 NC_009512.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 5031006 5192195 Pput_4505 Pseudomonas putida F1 uracil-xanthine permease YP_001269809.1 5029489 D 351746 CDS YP_001269810.1 148549708 5190698 complement(5031042..5032412) 1 NC_009512.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 5032412 5190698 Pput_4506 Pseudomonas putida F1 DNA repair protein RadA YP_001269810.1 5031042 R 351746 CDS YP_001269811.1 148549709 5190699 5032589..5033008 1 NC_009512.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5033008 mscL 5190699 mscL Pseudomonas putida F1 large-conductance mechanosensitive channel YP_001269811.1 5032589 D 351746 CDS YP_001269812.1 148549710 5195307 complement(5033285..5034139) 1 NC_009512.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase, NAD binding; oxidoreductase FAD/NAD(P)-binding subunit 5034139 5195307 Pput_4508 Pseudomonas putida F1 oxidoreductase FAD/NAD(P)-binding subunit YP_001269812.1 5033285 R 351746 CDS YP_001269813.1 148549711 5195308 5034277..5034984 1 NC_009512.1 PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; autoinducer-binding domain-containing protein 5034984 5195308 Pput_4509 Pseudomonas putida F1 autoinducer-binding domain-containing protein YP_001269813.1 5034277 D 351746 CDS YP_001269814.1 148549712 5193004 5035081..5036205 1 NC_009512.1 PFAM: methyltransferase small; rRNA (guanine-N(2)-)-methyltransferase 5036205 5193004 Pput_4510 Pseudomonas putida F1 rRNA (guanine-N(2)-)-methyltransferase YP_001269814.1 5035081 D 351746 CDS YP_001269815.1 148549713 5193005 complement(5036311..5036466) 1 NC_009512.1 hypothetical protein 5036466 5193005 Pput_4511 Pseudomonas putida F1 hypothetical protein YP_001269815.1 5036311 R 351746 CDS YP_001269816.1 148549714 5190784 complement(5036476..5037483) 1 NC_009512.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 5037483 5190784 Pput_4512 Pseudomonas putida F1 cytochrome d ubiquinol oxidase subunit II YP_001269816.1 5036476 R 351746 CDS YP_001269817.1 148549715 5190785 complement(5037487..5038923) 1 NC_009512.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 5038923 5190785 Pput_4513 Pseudomonas putida F1 cytochrome bd ubiquinol oxidase subunit I YP_001269817.1 5037487 R 351746 CDS YP_001269818.1 148549716 5192998 5039268..5040488 1 NC_009512.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5040488 5192998 Pput_4514 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269818.1 5039268 D 351746 CDS YP_001269819.1 148549717 5192999 5040688..5042013 1 NC_009512.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 5042013 5192999 Pput_4515 Pseudomonas putida F1 xanthine/uracil/vitamin C permease YP_001269819.1 5040688 D 351746 CDS YP_001269820.1 148549718 5190685 5042010..5043095 1 NC_009512.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5043095 5190685 Pput_4516 Pseudomonas putida F1 tRNA (uracil-5-)-methyltransferase YP_001269820.1 5042010 D 351746 CDS YP_001269821.1 148549719 5190686 complement(5043283..5043888) 1 NC_009512.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 5043888 5190686 Pput_4517 Pseudomonas putida F1 protocatechuate 3,4-dioxygenase subunit alpha YP_001269821.1 5043283 R 351746 CDS YP_001269822.1 148549720 5194556 complement(5043899..5044618) 1 NC_009512.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta 5044618 5194556 Pput_4518 Pseudomonas putida F1 protocatechuate 3,4-dioxygenase subunit beta YP_001269822.1 5043899 R 351746 CDS YP_001269823.1 148549721 5194557 5044818..5045708 1 NC_009512.1 PFAM: protein of unknown function, zinc metallopeptidase putative; hypothetical protein 5045708 5194557 Pput_4519 Pseudomonas putida F1 hypothetical protein YP_001269823.1 5044818 D 351746 CDS YP_001269824.1 148549722 5190242 5045880..5047799 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5047799 5190242 Pput_4520 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001269824.1 5045880 D 351746 CDS YP_001269825.1 148549723 5190243 complement(5047921..5049588) 1 NC_009512.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 5049588 5190243 Pput_4521 Pseudomonas putida F1 gamma-glutamyltransferase YP_001269825.1 5047921 R 351746 CDS YP_001269826.1 148549724 5190846 complement(5049706..5050602) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5050602 5190846 Pput_4522 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269826.1 5049706 R 351746 CDS YP_001269827.1 148549725 5190847 complement(5050786..5051376) 1 NC_009512.1 PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 5051376 5190847 Pput_4523 Pseudomonas putida F1 NAD(P)H dehydrogenase (quinone) YP_001269827.1 5050786 R 351746 CDS YP_001269828.1 148549726 5193280 5051540..5051854 1 NC_009512.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 5051854 5193280 Pput_4524 Pseudomonas putida F1 antibiotic biosynthesis monooxygenase YP_001269828.1 5051540 D 351746 CDS YP_001269829.1 148549727 5193281 complement(5051844..5052608) 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 5052608 5193281 Pput_4525 Pseudomonas putida F1 hypothetical protein YP_001269829.1 5051844 R 351746 CDS YP_001269830.1 148549728 5195445 5052686..5053567 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5053567 5195445 Pput_4526 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269830.1 5052686 D 351746 CDS YP_001269831.1 148549729 5195446 complement(5053674..5053949) 1 NC_009512.1 PFAM: protein of unknown function DUF156; hypothetical protein 5053949 5195446 Pput_4527 Pseudomonas putida F1 hypothetical protein YP_001269831.1 5053674 R 351746 CDS YP_001269832.1 148549730 5191720 5054020..5054958 1 NC_009512.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 5054958 5191720 Pput_4528 Pseudomonas putida F1 cation diffusion facilitator family transporter YP_001269832.1 5054020 D 351746 CDS YP_001269833.1 148549731 5191721 5055055..5055399 1 NC_009512.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 5055399 5191721 Pput_4529 Pseudomonas putida F1 hypothetical protein YP_001269833.1 5055055 D 351746 CDS YP_001269834.1 148549732 5192756 complement(5055592..5056479) 1 NC_009512.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 3-hydroxyisobutyrate dehydrogenase 5056479 5192756 Pput_4530 Pseudomonas putida F1 3-hydroxyisobutyrate dehydrogenase YP_001269834.1 5055592 R 351746 CDS YP_001269835.1 148549733 5192757 complement(5056490..5058016) 1 NC_009512.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 5058016 5192757 Pput_4531 Pseudomonas putida F1 methylmalonate-semialdehyde dehydrogenase YP_001269835.1 5056490 R 351746 CDS YP_001269836.1 148549734 5193600 5058149..5059099 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5059099 5193600 Pput_4532 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269836.1 5058149 D 351746 CDS YP_001269837.1 148549735 5193601 complement(5059234..5059722) 1 NC_009512.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 5059722 5193601 Pput_4533 Pseudomonas putida F1 OmpA/MotB domain-containing protein YP_001269837.1 5059234 R 351746 CDS YP_001269838.1 148549736 5191504 complement(5059730..5061001) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; diguanylate cyclase 5061001 5191504 Pput_4534 Pseudomonas putida F1 diguanylate cyclase YP_001269838.1 5059730 R 351746 CDS YP_001269839.1 148549737 5191505 complement(5060998..5061564) 1 NC_009512.1 hypothetical protein 5061564 5191505 Pput_4535 Pseudomonas putida F1 hypothetical protein YP_001269839.1 5060998 R 351746 CDS YP_001269840.1 148549738 5194496 complement(5061665..5063740) 1 NC_009512.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 5063740 5194496 Pput_4536 Pseudomonas putida F1 exodeoxyribonuclease V subunit alpha YP_001269840.1 5061665 R 351746 CDS YP_001269841.1 148549739 5194497 complement(5063737..5067411) 1 NC_009512.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; exodeoxyribonuclease V subunit beta 5067411 5194497 Pput_4537 Pseudomonas putida F1 exodeoxyribonuclease V subunit beta YP_001269841.1 5063737 R 351746 CDS YP_001269842.1 148549740 5193760 complement(5067408..5070890) 1 NC_009512.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma 5070890 5193760 Pput_4538 Pseudomonas putida F1 exodeoxyribonuclease V subunit gamma YP_001269842.1 5067408 R 351746 CDS YP_001269843.1 148549741 5191370 complement(5077136..5077747) 1 NC_009512.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 5077747 5191370 Pput_4539 Pseudomonas putida F1 putative sulfite oxidase subunit YedZ YP_001269843.1 5077136 R 351746 CDS YP_001269844.1 148549742 5195237 complement(5077747..5078760) 1 NC_009512.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 5078760 5195237 Pput_4540 Pseudomonas putida F1 putative sulfite oxidase subunit YedY YP_001269844.1 5077747 R 351746 CDS YP_001269845.1 148549743 5195238 complement(5078840..5079691) 1 NC_009512.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 5079691 5195238 Pput_4541 Pseudomonas putida F1 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001269845.1 5078840 R 351746 CDS YP_001269846.1 148549744 5194718 complement(5079842..5080858) 1 NC_009512.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 5080858 5194718 Pput_4542 Pseudomonas putida F1 ketol-acid reductoisomerase YP_001269846.1 5079842 R 351746 CDS YP_001269847.1 148549745 5194719 complement(5080915..5081406) 1 NC_009512.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 5081406 ilvH 5194719 ilvH Pseudomonas putida F1 acetolactate synthase 3 regulatory subunit YP_001269847.1 5080915 R 351746 CDS YP_001269848.1 148549746 5194522 complement(5081408..5083132) 1 NC_009512.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 5083132 5194522 Pput_4544 Pseudomonas putida F1 acetolactate synthase 3 catalytic subunit YP_001269848.1 5081408 R 351746 CDS YP_001269849.1 148549747 5194523 complement(5083541..5083873) 1 NC_009512.1 PFAM: protein of unknown function DUF446; hypothetical protein 5083873 5194523 Pput_4545 Pseudomonas putida F1 hypothetical protein YP_001269849.1 5083541 R 351746 CDS YP_001269850.1 148549748 5193368 complement(5083873..5084673) 1 NC_009512.1 hypothetical protein 5084673 5193368 Pput_4546 Pseudomonas putida F1 hypothetical protein YP_001269850.1 5083873 R 351746 CDS YP_001269851.1 148549749 5193369 complement(5084689..5087010) 1 NC_009512.1 TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 5087010 5193369 Pput_4547 Pseudomonas putida F1 penicillin-binding protein 1B YP_001269851.1 5084689 R 351746 CDS YP_001269852.1 148549750 5190711 5087087..5088688 1 NC_009512.1 hypothetical protein 5088688 5190711 Pput_4548 Pseudomonas putida F1 hypothetical protein YP_001269852.1 5087087 D 351746 CDS YP_001269853.1 148549751 5190712 5088846..5089124 1 NC_009512.1 PFAM: TfoX, C-terminal domain protein; TfoX domain-containing protein 5089124 5190712 Pput_4549 Pseudomonas putida F1 TfoX domain-containing protein YP_001269853.1 5088846 D 351746 CDS YP_001269854.1 148549752 5192008 complement(5089305..5090189) 1 NC_009512.1 PFAM: protein of unknown function DUF399; hypothetical protein 5090189 5192008 Pput_4550 Pseudomonas putida F1 hypothetical protein YP_001269854.1 5089305 R 351746 CDS YP_001269855.1 148549753 5192009 complement(5090294..5091061) 1 NC_009512.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 5091061 hmuV 5192009 hmuV Pseudomonas putida F1 hemin importer ATP-binding subunit YP_001269855.1 5090294 R 351746 CDS YP_001269856.1 148549754 5193249 complement(5091061..5092098) 1 NC_009512.1 PFAM: transport system permease protein; ABC-3 protein; transport system permease 5092098 5193249 Pput_4552 Pseudomonas putida F1 transport system permease YP_001269856.1 5091061 R 351746 CDS YP_001269857.1 148549755 5193250 complement(5092095..5092979) 1 NC_009512.1 PFAM: periplasmic binding protein; periplasmic binding protein 5092979 5193250 Pput_4553 Pseudomonas putida F1 periplasmic binding protein YP_001269857.1 5092095 R 351746 CDS YP_001269858.1 148549756 5192646 5093128..5093445 1 NC_009512.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 5093445 5192646 Pput_4554 Pseudomonas putida F1 Rieske (2Fe-2S) domain-containing protein YP_001269858.1 5093128 D 351746 CDS YP_001269859.1 148549757 5192647 complement(5093435..5094148) 1 NC_009512.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 5094148 5192647 Pput_4555 Pseudomonas putida F1 sugar fermentation stimulation protein A YP_001269859.1 5093435 R 351746 CDS YP_001269860.1 148549758 5193311 complement(5094148..5095320) 1 NC_009512.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; hypothetical protein 5095320 5193311 Pput_4556 Pseudomonas putida F1 hypothetical protein YP_001269860.1 5094148 R 351746 CDS YP_001269861.1 148549759 5193312 5095531..5095977 1 NC_009512.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 5095977 5193312 Pput_4557 Pseudomonas putida F1 TraR/DksA family transcriptional regulator YP_001269861.1 5095531 D 351746 CDS YP_001269862.1 148549760 5192788 5096026..5096928 1 NC_009512.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5096928 5192788 Pput_4558 Pseudomonas putida F1 glutamyl-Q tRNA(Asp) synthetase YP_001269862.1 5096026 D 351746 CDS YP_001269863.1 148549761 5192789 5097173..5097349 1 NC_009512.1 hypothetical protein 5097349 5192789 Pput_4559 Pseudomonas putida F1 hypothetical protein YP_001269863.1 5097173 D 351746 CDS YP_001269864.1 148549762 5192066 5097333..5100308 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; multi-sensor signal transduction histidine kinase 5100308 5192066 Pput_4560 Pseudomonas putida F1 multi-sensor signal transduction histidine kinase YP_001269864.1 5097333 D 351746 CDS YP_001269865.1 148549763 5192067 5100313..5101755 1 NC_009512.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 5101755 5192067 Pput_4561 Pseudomonas putida F1 Fis family two component sigma-54 specific transcriptional regulator YP_001269865.1 5100313 D 351746 CDS YP_001269866.1 148549764 5190790 5102724..5104106 1 NC_009512.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 5104106 5190790 Pput_4562 Pseudomonas putida F1 poly(A) polymerase YP_001269866.1 5102724 D 351746 CDS YP_001269867.1 148549765 5190791 5104103..5104582 1 NC_009512.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5104582 5190791 Pput_4563 Pseudomonas putida F1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001269867.1 5104103 D 351746 CDS YP_001269868.1 148549766 5192192 5104845..5105645 1 NC_009512.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5105645 panB 5192192 panB Pseudomonas putida F1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001269868.1 5104845 D 351746 CDS YP_001269869.1 148549767 5192193 5105642..5106505 1 NC_009512.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5106505 panC 5192193 panC Pseudomonas putida F1 pantoate--beta-alanine ligase YP_001269869.1 5105642 D 351746 CDS YP_001269870.1 148549768 5194702 5106714..5108378 1 NC_009512.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5108378 pgi 5194702 pgi Pseudomonas putida F1 glucose-6-phosphate isomerase YP_001269870.1 5106714 D 351746 CDS YP_001269871.1 148549769 5194703 5108559..5110493 1 NC_009512.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5110493 5194703 Pput_4567 Pseudomonas putida F1 acetyl-CoA synthetase YP_001269871.1 5108559 D 351746 CDS YP_001269872.1 148549770 5194966 5110535..5111404 1 NC_009512.1 hypothetical protein 5111404 5194966 Pput_4568 Pseudomonas putida F1 hypothetical protein YP_001269872.1 5110535 D 351746 CDS YP_001269873.1 148549771 5194967 5111483..5114419 1 NC_009512.1 PFAM: protein of unknown function DUF748; hypothetical protein 5114419 5194967 Pput_4569 Pseudomonas putida F1 hypothetical protein YP_001269873.1 5111483 D 351746 CDS YP_001269874.1 148549772 5191074 complement(5114522..5114935) 1 NC_009512.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5114935 5191074 Pput_4570 Pseudomonas putida F1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001269874.1 5114522 R 351746 CDS YP_001269875.1 148549773 5191075 5114996..5115298 1 NC_009512.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 5115298 5191075 Pput_4571 Pseudomonas putida F1 antibiotic biosynthesis monooxygenase YP_001269875.1 5114996 D 351746 CDS YP_001269876.1 148549774 5192911 complement(5115375..5115725) 1 NC_009512.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 5115725 5192911 Pput_4572 Pseudomonas putida F1 transport-associated protein YP_001269876.1 5115375 R 351746 CDS YP_001269877.1 148549775 5192912 complement(5115987..5118092) 1 NC_009512.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 5118092 5192912 Pput_4573 Pseudomonas putida F1 polynucleotide phosphorylase/polyadenylase YP_001269877.1 5115987 R 351746 CDS YP_001269878.1 148549776 5193968 complement(5118343..5118612) 1 NC_009512.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 5118612 rpsO 5193968 rpsO Pseudomonas putida F1 30S ribosomal protein S15 YP_001269878.1 5118343 R 351746 CDS YP_001269879.1 148549777 5193969 complement(5118760..5119677) 1 NC_009512.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 5119677 truB 5193969 truB Pseudomonas putida F1 tRNA pseudouridine synthase B YP_001269879.1 5118760 R 351746 CDS YP_001269880.1 148549778 5190351 complement(5119681..5120079) 1 NC_009512.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 5120079 rbfA 5190351 rbfA Pseudomonas putida F1 ribosome-binding factor A YP_001269880.1 5119681 R 351746 CDS YP_001269881.1 148549779 5190352 complement(5120196..5122736) 1 NC_009512.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 5122736 infB 5190352 infB Pseudomonas putida F1 translation initiation factor IF-2 YP_001269881.1 5120196 R 351746 CDS YP_001269882.1 148549780 5190590 complement(5122764..5124245) 1 NC_009512.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 5124245 nusA 5190590 nusA Pseudomonas putida F1 transcription elongation factor NusA YP_001269882.1 5122764 R 351746 CDS YP_001269883.1 148549781 5190591 complement(5124305..5124814) 1 NC_009512.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 5124814 5190591 Pput_4579 Pseudomonas putida F1 hypothetical protein YP_001269883.1 5124305 R 351746 CDS YP_001269884.1 148549782 5193014 complement(5125177..5125575) 1 NC_009512.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 5125575 secG 5193014 secG Pseudomonas putida F1 preprotein translocase subunit SecG YP_001269884.1 5125177 R 351746 CDS YP_001269885.1 148549783 5195460 complement(5125580..5126335) 1 NC_009512.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 5126335 tpiA 5195460 tpiA Pseudomonas putida F1 triosephosphate isomerase YP_001269885.1 5125580 R 351746 CDS YP_001269886.1 148549784 5194550 complement(5126401..5127741) 1 NC_009512.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 5127741 glmM 5194550 glmM Pseudomonas putida F1 phosphoglucosamine mutase YP_001269886.1 5126401 R 351746 CDS YP_001269887.1 148549785 5194551 complement(5127758..5128609) 1 NC_009512.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 5128609 5194551 Pput_4583 Pseudomonas putida F1 dihydropteroate synthase YP_001269887.1 5127758 R 351746 CDS YP_001269888.1 148549786 5194980 complement(5128618..5130522) 1 NC_009512.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 5130522 5194980 Pput_4584 Pseudomonas putida F1 ATP-dependent metalloprotease FtsH YP_001269888.1 5128618 R 351746 CDS YP_001269889.1 148549787 5194981 complement(5130729..5131352) 1 NC_009512.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 5131352 5194981 Pput_4585 Pseudomonas putida F1 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001269889.1 5130729 R 351746 CDS YP_001269890.1 148549788 5192716 5131455..5131763 1 NC_009512.1 PFAM: protein of unknown function UPF0044; hypothetical protein 5131763 5192716 Pput_4586 Pseudomonas putida F1 hypothetical protein YP_001269890.1 5131455 D 351746 CDS YP_001269891.1 148549789 5192717 complement(5131776..5132225) 1 NC_009512.1 hypothetical protein 5132225 5192717 Pput_4587 Pseudomonas putida F1 hypothetical protein YP_001269891.1 5131776 R 351746 CDS YP_001269892.1 148549790 5192141 complement(5132203..5132685) 1 NC_009512.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 5132685 greA 5192141 greA Pseudomonas putida F1 transcription elongation factor GreA YP_001269892.1 5132203 R 351746 CDS YP_001269893.1 148549791 5192142 complement(5132682..5135849) 1 NC_009512.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 5135849 carB 5192142 carB Pseudomonas putida F1 carbamoyl phosphate synthase large subunit YP_001269893.1 5132682 R 351746 CDS YP_001269894.1 148549792 5194051 complement(5136009..5137169) 1 NC_009512.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 5137169 5194051 Pput_4590 Pseudomonas putida F1 carbamoyl phosphate synthase small subunit YP_001269894.1 5136009 R 351746 CDS YP_001269895.1 148549793 5194052 complement(5137472..5138275) 1 NC_009512.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 5138275 5194052 Pput_4591 Pseudomonas putida F1 dihydrodipicolinate reductase YP_001269895.1 5137472 R 351746 CDS YP_001269896.1 148549794 5193801 complement(5138289..5139413) 1 NC_009512.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 5139413 5193801 Pput_4592 Pseudomonas putida F1 chaperone protein DnaJ YP_001269896.1 5138289 R 351746 CDS YP_001269897.1 148549795 5193802 complement(5139701..5141536) 1 NC_009512.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 5141536 dnaK 5193802 dnaK Pseudomonas putida F1 molecular chaperone DnaK YP_001269897.1 5139701 R 351746 CDS YP_001269898.1 148549796 5190804 complement(5141638..5142195) 1 NC_009512.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 5142195 5190804 Pput_4594 Pseudomonas putida F1 heat shock protein GrpE YP_001269898.1 5141638 R 351746 CDS YP_001269899.1 148549797 5190805 5142388..5144061 1 NC_009512.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 5144061 5190805 Pput_4595 Pseudomonas putida F1 DNA repair protein RecN YP_001269899.1 5142388 D 351746 CDS YP_001269900.1 148549798 5194291 complement(5144251..5144655) 1 NC_009512.1 PFAM: ferric-uptake regulator; ferric uptake regulator family protein 5144655 5194291 Pput_4596 Pseudomonas putida F1 ferric uptake regulator family protein YP_001269900.1 5144251 R 351746 CDS YP_001269901.1 148549799 5194292 5144753..5145289 1 NC_009512.1 PFAM: SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 5145289 5194292 Pput_4597 Pseudomonas putida F1 SmpA/OmlA domain-containing protein YP_001269901.1 5144753 D 351746 CDS YP_001269902.1 148549800 5191391 complement(5145353..5145787) 1 NC_009512.1 PFAM: cyclase/dehydrase; cyclase/dehydrase 5145787 5191391 Pput_4598 Pseudomonas putida F1 cyclase/dehydrase YP_001269902.1 5145353 R 351746 CDS YP_001269903.1 148549801 5191392 5145951..5146433 1 NC_009512.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5146433 smpB 5191392 smpB Pseudomonas putida F1 SsrA-binding protein YP_001269903.1 5145951 D 351746 CDS YP_001269904.1 148549802 5190383 complement(5146638..5147405) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 5147405 5190383 Pput_4600 Pseudomonas putida F1 GntR family transcriptional regulator YP_001269904.1 5146638 R 351746 CDS YP_001269905.1 148549803 5190384 5147662..5149332 1 NC_009512.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 5149332 5190384 Pput_4601 Pseudomonas putida F1 L-lactate transport YP_001269905.1 5147662 D 351746 CDS YP_001269906.1 148549804 5192844 5149395..5150540 1 NC_009512.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5150540 lldD 5192844 lldD Pseudomonas putida F1 L-lactate dehydrogenase YP_001269906.1 5149395 D 351746 CDS YP_001269907.1 148549805 5192845 5150616..5153426 1 NC_009512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; D-lactate dehydrogenase 5153426 5192845 Pput_4603 Pseudomonas putida F1 D-lactate dehydrogenase YP_001269907.1 5150616 D 351746 CDS YP_001269908.1 148549806 5190443 5153901..5154191 1 NC_009512.1 hypothetical protein 5154191 5190443 Pput_4604 Pseudomonas putida F1 hypothetical protein YP_001269908.1 5153901 D 351746 CDS YP_001269909.1 148549807 5192587 5154871..5156127 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 5156127 5192587 Pput_4605 Pseudomonas putida F1 phage integrase family protein YP_001269909.1 5154871 D 351746 CDS YP_001269910.1 148549808 5190613 5157092..5158489 1 NC_009512.1 hypothetical protein 5158489 5190613 Pput_4606 Pseudomonas putida F1 hypothetical protein YP_001269910.1 5157092 D 351746 CDS YP_001269911.1 148549809 5190614 5158473..5158832 1 NC_009512.1 hypothetical protein 5158832 5190614 Pput_4607 Pseudomonas putida F1 hypothetical protein YP_001269911.1 5158473 D 351746 CDS YP_001269912.1 148549810 5193534 5158810..5159790 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 5159790 5193534 Pput_4608 Pseudomonas putida F1 phage integrase family protein YP_001269912.1 5158810 D 351746 CDS YP_001269913.1 148549811 5193535 5159787..5160062 1 NC_009512.1 hypothetical protein 5160062 5193535 Pput_4609 Pseudomonas putida F1 hypothetical protein YP_001269913.1 5159787 D 351746 CDS YP_001269914.1 148549812 5192271 complement(5160468..5162438) 1 NC_009512.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; hypothetical protein 5162438 5192271 Pput_4610 Pseudomonas putida F1 hypothetical protein YP_001269914.1 5160468 R 351746 CDS YP_001269915.1 148549813 5192272 complement(5162468..5164153) 1 NC_009512.1 PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 5164153 5192272 Pput_4611 Pseudomonas putida F1 restriction modification system DNA specificity subunit YP_001269915.1 5162468 R 351746 CDS YP_001269916.1 148549814 5195338 complement(5164150..5165619) 1 NC_009512.1 PFAM: N-6 DNA methylase; N-6 DNA methylase 5165619 5195338 Pput_4612 Pseudomonas putida F1 N-6 DNA methylase YP_001269916.1 5164150 R 351746 CDS YP_001269917.1 148549815 5195339 complement(5165622..5166455) 1 NC_009512.1 hypothetical protein 5166455 5195339 Pput_4613 Pseudomonas putida F1 hypothetical protein YP_001269917.1 5165622 R 351746 CDS YP_001269918.1 148549816 5194277 complement(5166459..5168831) 1 NC_009512.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; EcoEI R domain-containing protein 5168831 5194277 Pput_4614 Pseudomonas putida F1 EcoEI R domain-containing protein YP_001269918.1 5166459 R 351746 CDS YP_001269919.1 148549817 5194278 complement(5169632..5172880) 1 NC_009512.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; non-specific serine/threonine protein kinase 5172880 5194278 Pput_4615 Pseudomonas putida F1 non-specific serine/threonine protein kinase YP_001269919.1 5169632 R 351746 CDS YP_001269920.1 148549818 5194175 complement(5172880..5174505) 1 NC_009512.1 hypothetical protein 5174505 5194175 Pput_4616 Pseudomonas putida F1 hypothetical protein YP_001269920.1 5172880 R 351746 CDS YP_001269921.1 148549819 5194176 complement(5174502..5175245) 1 NC_009512.1 hypothetical protein 5175245 5194176 Pput_4617 Pseudomonas putida F1 hypothetical protein YP_001269921.1 5174502 R 351746 CDS YP_001269922.1 148549820 5193126 complement(5175259..5177451) 1 NC_009512.1 hypothetical protein 5177451 5193126 Pput_4618 Pseudomonas putida F1 hypothetical protein YP_001269922.1 5175259 R 351746 CDS YP_001269923.1 148549821 5193127 complement(5178049..5179359) 1 NC_009512.1 McrBC 5-methylcytosine restriction system component-like protein 5179359 5193127 Pput_4619 Pseudomonas putida F1 McrBC 5-methylcytosine restriction system component-like protein YP_001269923.1 5178049 R 351746 CDS YP_001269924.1 148549822 5194150 complement(5179356..5181944) 1 NC_009512.1 PFAM: ATPase associated with various cellular activities, AAA_5; ATPase 5181944 5194150 Pput_4620 Pseudomonas putida F1 ATPase YP_001269924.1 5179356 R 351746 CDS YP_001269925.1 148549823 5194151 complement(5182768..5183448) 1 NC_009512.1 hypothetical protein 5183448 5194151 Pput_4621 Pseudomonas putida F1 hypothetical protein YP_001269925.1 5182768 R 351746 CDS YP_001269926.1 148549824 5195545 complement(5183752..5184018) 1 NC_009512.1 hypothetical protein 5184018 5195545 Pput_4622 Pseudomonas putida F1 hypothetical protein YP_001269926.1 5183752 R 351746 CDS YP_001269927.1 148549825 5195546 5184132..5185007 1 NC_009512.1 transcriptional regulator-like protein 5185007 5195546 Pput_4623 Pseudomonas putida F1 transcriptional regulator-like protein YP_001269927.1 5184132 D 351746 CDS YP_001269928.1 148549826 5195429 complement(5185357..5187750) 1 NC_009512.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 5187750 5195429 Pput_4624 Pseudomonas putida F1 TonB-dependent siderophore receptor YP_001269928.1 5185357 R 351746 CDS YP_001269929.1 148549827 5195430 complement(5188239..5188991) 1 NC_009512.1 hypothetical protein 5188991 5195430 Pput_4625 Pseudomonas putida F1 hypothetical protein YP_001269929.1 5188239 R 351746 CDS YP_001269930.1 148549828 5195082 complement(5189470..5190093) 1 NC_009512.1 hypothetical protein 5190093 5195082 Pput_4626 Pseudomonas putida F1 hypothetical protein YP_001269930.1 5189470 R 351746 CDS YP_001269931.1 148549829 5195083 complement(5190284..5191675) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 5191675 5195083 Pput_4627 Pseudomonas putida F1 amino acid permease-associated protein YP_001269931.1 5190284 R 351746 CDS YP_001269932.1 148549830 5195420 complement(5192093..5193436) 1 NC_009512.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 5193436 5195420 Pput_4628 Pseudomonas putida F1 d-galactonate transporter YP_001269932.1 5192093 R 351746 CDS YP_001269933.1 148549831 5195421 complement(5193531..5194508) 1 NC_009512.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 5194508 5195421 Pput_4629 Pseudomonas putida F1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001269933.1 5193531 R 351746 CDS YP_001269934.1 148549832 5194646 5194581..5195468 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5195468 5194646 Pput_4630 Pseudomonas putida F1 LysR family transcriptional regulator YP_001269934.1 5194581 D 351746 CDS YP_001269935.1 148549833 5194647 complement(5195707..5197062) 1 NC_009512.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; glucarate dehydratase 5197062 5194647 Pput_4631 Pseudomonas putida F1 glucarate dehydratase YP_001269935.1 5195707 R 351746 CDS YP_001269936.1 148549834 5194004 complement(5197082..5198434) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 5198434 5194004 Pput_4632 Pseudomonas putida F1 major facilitator superfamily transporter YP_001269936.1 5197082 R 351746 CDS YP_001269937.1 148549835 5194005 5198694..5199395 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 5199395 5194005 Pput_4633 Pseudomonas putida F1 GntR family transcriptional regulator YP_001269937.1 5198694 D 351746 CDS YP_001269938.1 148549836 5193136 complement(5199484..5200494) 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 5200494 5193136 Pput_4634 Pseudomonas putida F1 alcohol dehydrogenase YP_001269938.1 5199484 R 351746 CDS YP_001269939.1 148549837 5193137 complement(5200659..5201249) 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 5201249 5193137 Pput_4635 Pseudomonas putida F1 HAD family hydrolase YP_001269939.1 5200659 R 351746 CDS YP_001269940.1 148549838 5193750 complement(5201246..5202115) 1 NC_009512.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 5202115 5193750 Pput_4636 Pseudomonas putida F1 acyl-CoA thioesterase II YP_001269940.1 5201246 R 351746 CDS YP_001269941.1 148549839 5193751 complement(5202265..5202834) 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5202834 5193751 Pput_4637 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001269941.1 5202265 R 351746 CDS YP_001269942.1 148549840 5194594 5203014..5203700 1 NC_009512.1 PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 5203700 5194594 Pput_4638 Pseudomonas putida F1 putative phosphohistidine phosphatase SixA YP_001269942.1 5203014 D 351746 CDS YP_001269943.1 148549841 5194595 5204199..5205152 1 NC_009512.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 5205152 5194595 Pput_4639 Pseudomonas putida F1 histone deacetylase superfamily protein YP_001269943.1 5204199 D 351746 CDS YP_001269944.1 148549842 5194391 5205301..5206539 1 NC_009512.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 5206539 5194391 Pput_4640 Pseudomonas putida F1 hypothetical protein YP_001269944.1 5205301 D 351746 CDS YP_001269945.1 148549843 5194392 complement(5206692..5208023) 1 NC_009512.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 5208023 5194392 Pput_4641 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001269945.1 5206692 R 351746 CDS YP_001269946.1 148549844 5193039 complement(5208079..5208999) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 5208999 5193039 Pput_4642 Pseudomonas putida F1 hypothetical protein YP_001269946.1 5208079 R 351746 CDS YP_001269947.1 148549845 5193040 complement(5209118..5209753) 1 NC_009512.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 5209753 5193040 Pput_4643 Pseudomonas putida F1 DNA polymerase III subunit epsilon YP_001269947.1 5209118 R 351746 CDS YP_001269948.1 148549846 5193689 complement(5209763..5210242) 1 NC_009512.1 PFAM: protein of unknown function DUF88; hypothetical protein 5210242 5193689 Pput_4644 Pseudomonas putida F1 hypothetical protein YP_001269948.1 5209763 R 351746 CDS YP_001269949.1 148549847 5193690 complement(5210404..5211162) 1 NC_009512.1 putative periplasmic ligand-binding sensor protein 5211162 5193690 Pput_4645 Pseudomonas putida F1 putative periplasmic ligand-binding sensor protein YP_001269949.1 5210404 R 351746 CDS YP_001269950.1 148549848 5194947 5211330..5211986 1 NC_009512.1 PFAM: protein of unknown function UPF0259; hypothetical protein 5211986 5194947 Pput_4646 Pseudomonas putida F1 hypothetical protein YP_001269950.1 5211330 D 351746 CDS YP_001269951.1 148549849 5194948 5212052..5212591 1 NC_009512.1 hypothetical protein 5212591 5194948 Pput_4647 Pseudomonas putida F1 hypothetical protein YP_001269951.1 5212052 D 351746 CDS YP_001269952.1 148549850 5194860 complement(5212661..5215189) 1 NC_009512.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 5215189 5194860 Pput_4648 Pseudomonas putida F1 ATP-dependent helicase HrpB YP_001269952.1 5212661 R 351746 CDS YP_001269953.1 148549851 5194861 5215306..5215725 1 NC_009512.1 hypothetical protein 5215725 5194861 Pput_4649 Pseudomonas putida F1 hypothetical protein YP_001269953.1 5215306 D 351746 CDS YP_001269954.1 148549852 5195503 5215748..5216620 1 NC_009512.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 5216620 5195503 Pput_4650 Pseudomonas putida F1 cation diffusion facilitator family transporter YP_001269954.1 5215748 D 351746 CDS YP_001269955.1 148549853 5195504 complement(5216898..5217815) 1 NC_009512.1 hypothetical protein 5217815 5195504 Pput_4651 Pseudomonas putida F1 hypothetical protein YP_001269955.1 5216898 R 351746 CDS YP_001269956.1 148549854 5194964 5218130..5218606 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, MarR; AsnC family transcriptional regulator 5218606 5194964 Pput_4652 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001269956.1 5218130 D 351746 CDS YP_001269957.1 148549855 5194965 5218660..5218863 1 NC_009512.1 hypothetical protein 5218863 5194965 Pput_4653 Pseudomonas putida F1 hypothetical protein YP_001269957.1 5218660 D 351746 CDS YP_001269958.1 148549856 5190850 complement(5218977..5219609) 1 NC_009512.1 PFAM: pseudouridine synthase; pseudouridine synthase 5219609 5190850 Pput_4654 Pseudomonas putida F1 pseudouridine synthase YP_001269958.1 5218977 R 351746 CDS YP_001269959.1 148549857 5190851 complement(5219616..5221166) 1 NC_009512.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 5221166 5190851 Pput_4655 Pseudomonas putida F1 AMP nucleosidase YP_001269959.1 5219616 R 351746 CDS YP_001269960.1 148549858 5195230 complement(5221185..5222837) 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 5222837 5195230 Pput_4656 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001269960.1 5221185 R 351746 CDS YP_001269961.1 148549859 5195231 complement(5223049..5225037) 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor signal transduction histidine kinase 5225037 5195231 Pput_4657 Pseudomonas putida F1 integral membrane sensor signal transduction histidine kinase YP_001269961.1 5223049 R 351746 CDS YP_001269962.1 148549860 5194444 5225303..5226100 1 NC_009512.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5226100 5194444 Pput_4658 Pseudomonas putida F1 phosphomethylpyrimidine kinase YP_001269962.1 5225303 D 351746 CDS YP_001269963.1 148549861 5194445 5226114..5226737 1 NC_009512.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5226737 thiE 5194445 thiE Pseudomonas putida F1 thiamine-phosphate pyrophosphorylase YP_001269963.1 5226114 D 351746 CDS YP_001269964.1 148549862 5190519 5226754..5228037 1 NC_009512.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5228037 5190519 Pput_4660 Pseudomonas putida F1 glutamate-1-semialdehyde aminotransferase YP_001269964.1 5226754 D 351746 CDS YP_001269965.1 148549863 5190520 5228282..5228827 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 5228827 5190520 Pput_4661 Pseudomonas putida F1 Sel1 domain-containing protein YP_001269965.1 5228282 D 351746 CDS YP_001269966.1 148549864 5194137 complement(5228831..5229157) 1 NC_009512.1 PFAM: Domain of unknown function DUF1820; hypothetical protein 5229157 5194137 Pput_4662 Pseudomonas putida F1 hypothetical protein YP_001269966.1 5228831 R 351746 CDS YP_001269967.1 148549865 5194138 5229390..5230388 1 NC_009512.1 PFAM: PhoH family protein; PhoH family protein 5230388 5194138 Pput_4663 Pseudomonas putida F1 PhoH family protein YP_001269967.1 5229390 D 351746 CDS YP_001269968.1 148549866 5194453 5230381..5230854 1 NC_009512.1 PFAM: protein of unknown function UPF0054; putative metalloprotease 5230854 5194453 Pput_4664 Pseudomonas putida F1 putative metalloprotease YP_001269968.1 5230381 D 351746 CDS YP_001269969.1 148549867 5194454 5230880..5231719 1 NC_009512.1 PFAM: CBS domain containing protein; transporter-associated region; hypothetical protein 5231719 5194454 Pput_4665 Pseudomonas putida F1 hypothetical protein YP_001269969.1 5230880 D 351746 CDS YP_001269970.1 148549868 5192235 5231728..5233245 1 NC_009512.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5233245 lnt 5192235 lnt Pseudomonas putida F1 apolipoprotein N-acyltransferase YP_001269970.1 5231728 D 351746 CDS YP_001269971.1 148549869 5192236 complement(5233392..5234153) 1 NC_009512.1 PFAM: protein of unknown function DUF218; hypothetical protein 5234153 5192236 Pput_4667 Pseudomonas putida F1 hypothetical protein YP_001269971.1 5233392 R 351746 CDS YP_001269972.1 148549870 5191142 complement(5234288..5234602) 1 NC_009512.1 hypothetical protein 5234602 5191142 Pput_4668 Pseudomonas putida F1 hypothetical protein YP_001269972.1 5234288 R 351746 CDS YP_001269973.1 148549871 5191143 5234716..5237436 1 NC_009512.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5237436 leuS 5191143 leuS Pseudomonas putida F1 leucyl-tRNA synthetase YP_001269973.1 5234716 D 351746 CDS YP_001269974.1 148549872 5194173 5237498..5238103 1 NC_009512.1 PFAM: Rare lipoprotein B; rare lipoprotein B 5238103 5194173 Pput_4670 Pseudomonas putida F1 rare lipoprotein B YP_001269974.1 5237498 D 351746 CDS YP_001269975.1 148549873 5194174 5238143..5239180 1 NC_009512.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5239180 holA 5194174 holA Pseudomonas putida F1 DNA polymerase III subunit delta YP_001269975.1 5238143 D 351746 CDS YP_001269976.1 148549874 5194287 5239398..5239562 1 NC_009512.1 PFAM: protein of unknown function DUF331; hypothetical protein 5239562 5194287 Pput_4672 Pseudomonas putida F1 hypothetical protein YP_001269976.1 5239398 D 351746 CDS YP_001269977.1 148549875 5194288 5239623..5240939 1 NC_009512.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; lytic murein transglycosylase 5240939 5194288 Pput_4673 Pseudomonas putida F1 lytic murein transglycosylase YP_001269977.1 5239623 D 351746 CDS YP_001269978.1 148549876 5195257 complement(5240973..5241911) 1 NC_009512.1 PFAM: peptidase U61, LD-carboxypeptidase A; peptidase U61, LD-carboxypeptidase A 5241911 5195257 Pput_4674 Pseudomonas putida F1 peptidase U61, LD-carboxypeptidase A YP_001269978.1 5240973 R 351746 CDS YP_001269979.1 148549877 5195258 complement(5242010..5243026) 1 NC_009512.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 5243026 5195258 Pput_4675 Pseudomonas putida F1 lipoyl synthase YP_001269979.1 5242010 R 351746 CDS YP_001269980.1 148549878 5195136 complement(5243029..5243676) 1 NC_009512.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 5243676 lipB 5195136 lipB Pseudomonas putida F1 lipoate-protein ligase B YP_001269980.1 5243029 R 351746 CDS YP_001269981.1 148549879 5195137 complement(5243676..5243951) 1 NC_009512.1 PFAM: protein of unknown function DUF493; hypothetical protein 5243951 5195137 Pput_4677 Pseudomonas putida F1 hypothetical protein YP_001269981.1 5243676 R 351746 CDS YP_001269982.1 148549880 5195563 complement(5244025..5245236) 1 NC_009512.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase 5245236 5195563 Pput_4678 Pseudomonas putida F1 serine-type D-Ala-D-Ala carboxypeptidase YP_001269982.1 5244025 R 351746 CDS YP_001269983.1 148549881 5195564 complement(5245406..5246407) 1 NC_009512.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; rare lipoprotein A 5246407 5195564 Pput_4679 Pseudomonas putida F1 rare lipoprotein A YP_001269983.1 5245406 R 351746 CDS YP_001269984.1 148549882 5193868 complement(5246407..5247417) 1 NC_009512.1 TIGRFAM: lytic murein transglycosylase B; lytic murein transglycosylase B 5247417 5193868 Pput_4680 Pseudomonas putida F1 lytic murein transglycosylase B YP_001269984.1 5246407 R 351746 CDS YP_001269985.1 148549883 5193869 complement(5247435..5248577) 1 NC_009512.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 5248577 5193869 Pput_4681 Pseudomonas putida F1 rod shape-determining protein RodA YP_001269985.1 5247435 R 351746 CDS YP_001269986.1 148549884 5191076 complement(5248577..5250466) 1 NC_009512.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 5250466 5191076 Pput_4682 Pseudomonas putida F1 peptidoglycan glycosyltransferase YP_001269986.1 5248577 R 351746 CDS YP_001269987.1 148549885 5191077 complement(5250483..5250950) 1 NC_009512.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 5250950 5191077 Pput_4683 Pseudomonas putida F1 rRNA large subunit methyltransferase YP_001269987.1 5250483 R 351746 CDS YP_001269988.1 148549886 5192327 complement(5250961..5251437) 1 NC_009512.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 5251437 5192327 Pput_4684 Pseudomonas putida F1 iojap family protein YP_001269988.1 5250961 R 351746 CDS YP_001269989.1 148549887 5192328 complement(5251424..5252116) 1 NC_009512.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 5252116 nadD 5192328 nadD Pseudomonas putida F1 nicotinic acid mononucleotide adenylyltransferase YP_001269989.1 5251424 R 351746 CDS YP_001269990.1 148549888 5193564 complement(5252085..5253356) 1 NC_009512.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 5253356 proA 5193564 proA Pseudomonas putida F1 gamma-glutamyl phosphate reductase YP_001269990.1 5252085 R 351746 CDS YP_001269991.1 148549889 5193565 5253687..5254355 1 NC_009512.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5254355 5193565 Pput_4687 Pseudomonas putida F1 3-methyladenine DNA glycosylase YP_001269991.1 5253687 D 351746 CDS YP_001269992.1 148549890 5193352 5254358..5255674 1 NC_009512.1 PFAM: phosphoesterase, PA-phosphatase related; SNARE associated Golgi protein; PA-phosphatase-like protein 5255674 5193352 Pput_4688 Pseudomonas putida F1 PA-phosphatase-like protein YP_001269992.1 5254358 D 351746 CDS YP_001269993.1 148549891 5193353 complement(5255786..5256376) 1 NC_009512.1 PFAM: peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 5256376 5193353 Pput_4689 Pseudomonas putida F1 peptidase S16, lon domain-containing protein YP_001269993.1 5255786 R 351746 CDS YP_001269994.1 148549892 5192323 complement(5256386..5257102) 1 NC_009512.1 PFAM: LrgB family protein; LrgB family protein 5257102 5192323 Pput_4690 Pseudomonas putida F1 LrgB family protein YP_001269994.1 5256386 R 351746 CDS YP_001269995.1 148549893 5192324 complement(5257099..5257461) 1 NC_009512.1 PFAM: LrgA family protein; LrgA family protein 5257461 5192324 Pput_4691 Pseudomonas putida F1 LrgA family protein YP_001269995.1 5257099 R 351746 CDS YP_001269996.1 148549894 5191659 5257605..5258060 1 NC_009512.1 PFAM: MaoC domain protein dehydratase; dehydratase 5258060 5191659 Pput_4692 Pseudomonas putida F1 dehydratase YP_001269996.1 5257605 D 351746 CDS YP_001269997.1 148549895 5191660 5258177..5259055 1 NC_009512.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5259055 prmA 5191660 prmA Pseudomonas putida F1 50S ribosomal protein L11 methyltransferase YP_001269997.1 5258177 D 351746 CDS YP_001269998.1 148549896 5191710 5259098..5260453 1 NC_009512.1 TIGRFAM: MJ0042 family finger-like protein; Zinc finger-domain-containing protein 5260453 5191710 Pput_4694 Pseudomonas putida F1 Zinc finger-domain-containing protein YP_001269998.1 5259098 D 351746 CDS YP_001269999.1 148549897 5191711 5260661..5261674 1 NC_009512.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; nifR3 family TIM-barrel protein 5261674 5191711 Pput_4695 Pseudomonas putida F1 nifR3 family TIM-barrel protein YP_001269999.1 5260661 D 351746 CDS YP_001270000.1 148549898 5193470 5261671..5261991 1 NC_009512.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5261991 fis 5193470 fis Pseudomonas putida F1 DNA-binding protein Fis YP_001270000.1 5261671 D 351746 CDS YP_001270001.1 148549899 5193471 5262073..5263680 1 NC_009512.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5263680 purH 5193471 purH Pseudomonas putida F1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001270001.1 5262073 D 351746 CDS YP_001270002.1 148549900 5192558 5263827..5265119 1 NC_009512.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5265119 5192558 Pput_4698 Pseudomonas putida F1 phosphoribosylamine--glycine ligase YP_001270002.1 5263827 D 351746 CDS YP_001270003.1 148549901 5192559 5265258..5268029 1 NC_009512.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor hybrid histidine kinase 5268029 5192559 Pput_4699 Pseudomonas putida F1 integral membrane sensor hybrid histidine kinase YP_001270003.1 5265258 D 351746 CDS YP_001270004.1 148549902 5195113 5268105..5268701 1 NC_009512.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 5268701 5195113 Pput_4700 Pseudomonas putida F1 multiple antibiotic resistance (MarC)-like protein YP_001270004.1 5268105 D 351746 CDS YP_001270005.1 148549903 5195114 complement(5268698..5269321) 1 NC_009512.1 hypothetical protein 5269321 5195114 Pput_4701 Pseudomonas putida F1 hypothetical protein YP_001270005.1 5268698 R 351746 CDS YP_001270006.1 148549904 5193105 complement(5269318..5270007) 1 NC_009512.1 hypothetical protein 5270007 5193105 Pput_4702 Pseudomonas putida F1 hypothetical protein YP_001270006.1 5269318 R 351746 CDS YP_001270007.1 148549905 5193106 complement(5270067..5270747) 1 NC_009512.1 hypothetical protein 5270747 5193106 Pput_4703 Pseudomonas putida F1 hypothetical protein YP_001270007.1 5270067 R 351746 CDS YP_001270008.1 148549906 5191090 complement(5270840..5272522) 1 NC_009512.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; precorrin-3B C(17)-methyltransferase 5272522 5191090 Pput_4704 Pseudomonas putida F1 precorrin-3B C(17)-methyltransferase YP_001270008.1 5270840 R 351746 CDS YP_001270009.1 148549907 5191091 complement(5272525..5273256) 1 NC_009512.1 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase 5273256 5191091 Pput_4705 Pseudomonas putida F1 precorrin-2 C(20)-methyltransferase YP_001270009.1 5272525 R 351746 CDS YP_001270010.1 148549908 5194281 complement(5273256..5273882) 1 NC_009512.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 5273882 cobH 5194281 cobH Pseudomonas putida F1 precorrin-8X methylmutase YP_001270010.1 5273256 R 351746 CDS YP_001270011.1 148549909 5194282 complement(5273875..5275191) 1 NC_009512.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; precorrin-3B synthase 5275191 5194282 Pput_4707 Pseudomonas putida F1 precorrin-3B synthase YP_001270011.1 5273875 R 351746 CDS YP_001270012.1 148549910 5193270 5275450..5276661 1 NC_009512.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5276661 5193270 Pput_4708 Pseudomonas putida F1 precorrin-6y C5,15-methyltransferase subunit CbiE YP_001270012.1 5275450 D 351746 CDS YP_001270013.1 148549911 5193271 5276654..5277748 1 NC_009512.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5277748 cbiD 5193271 cbiD Pseudomonas putida F1 cobalt-precorrin-6A synthase YP_001270013.1 5276654 D 351746 CDS YP_001270014.1 148549912 5192897 5277745..5278464 1 NC_009512.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5278464 5192897 Pput_4710 Pseudomonas putida F1 cobalt-precorrin-6x reductase YP_001270014.1 5277745 D 351746 CDS YP_001270015.1 148549913 5192898 5278593..5279030 1 NC_009512.1 PFAM: protein of unknown function DUF107; hypothetical protein 5279030 5192898 Pput_4711 Pseudomonas putida F1 hypothetical protein YP_001270015.1 5278593 D 351746 CDS YP_001270016.1 148549914 5192135 5279057..5279911 1 NC_009512.1 PFAM: band 7 protein; hypothetical protein 5279911 5192135 Pput_4712 Pseudomonas putida F1 hypothetical protein YP_001270016.1 5279057 D 351746 CDS YP_001270017.1 148549915 5192136 5280183..5280572 1 NC_009512.1 hypothetical protein 5280572 5192136 Pput_4713 Pseudomonas putida F1 hypothetical protein YP_001270017.1 5280183 D 351746 CDS YP_001270018.1 148549916 5193201 5280620..5281105 1 NC_009512.1 PFAM: protein of unknown function DUF461; hypothetical protein 5281105 5193201 Pput_4714 Pseudomonas putida F1 hypothetical protein YP_001270018.1 5280620 D 351746 CDS YP_001270019.1 148549917 5193202 5281128..5281559 1 NC_009512.1 hypothetical protein 5281559 5193202 Pput_4715 Pseudomonas putida F1 hypothetical protein YP_001270019.1 5281128 D 351746 CDS YP_001270020.1 148549918 5193241 5281626..5283692 1 NC_009512.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent copper receptor 5283692 5193241 Pput_4716 Pseudomonas putida F1 TonB-dependent copper receptor YP_001270020.1 5281626 D 351746 CDS YP_001270021.1 148549919 5193242 5283749..5285116 1 NC_009512.1 PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase 5285116 5193242 Pput_4717 Pseudomonas putida F1 peptidase YP_001270021.1 5283749 D 351746 CDS YP_001270022.1 148549920 5195575 5285338..5286744 1 NC_009512.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5286744 5195575 Pput_4718 Pseudomonas putida F1 D-alanine/D-serine/glycine permease YP_001270022.1 5285338 D 351746 CDS YP_001270023.1 148549921 5195576 5287041..5288306 1 NC_009512.1 branched chain amino acid ABC transporter substrate-binding protein 5288306 5195576 Pput_4719 Pseudomonas putida F1 branched chain amino acid ABC transporter substrate-binding protein YP_001270023.1 5287041 D 351746 CDS YP_001270024.1 148549922 5193051 5288480..5289934 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 5289934 5193051 Pput_4720 Pseudomonas putida F1 inner-membrane translocator YP_001270024.1 5288480 D 351746 CDS YP_001270025.1 148549923 5193052 5289934..5291013 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 5291013 5193052 Pput_4721 Pseudomonas putida F1 inner-membrane translocator YP_001270025.1 5289934 D 351746 CDS YP_001270026.1 148549924 5194069 5291010..5291867 1 NC_009512.1 PFAM: ABC transporter related; ABC transporter-like protein 5291867 5194069 Pput_4722 Pseudomonas putida F1 ABC transporter-like protein YP_001270026.1 5291010 D 351746 CDS YP_001270027.1 148549925 5194070 5292022..5292720 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5292720 5194070 Pput_4723 Pseudomonas putida F1 ABC transporter-like protein YP_001270027.1 5292022 D 351746 CDS YP_001270028.1 148549926 5194091 5292752..5293267 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5293267 5194091 Pput_4724 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001270028.1 5292752 D 351746 CDS YP_001270029.1 148549927 5194092 complement(5293615..5293920) 1 NC_009512.1 hypothetical protein 5293920 5194092 Pput_4725 Pseudomonas putida F1 hypothetical protein YP_001270029.1 5293615 R 351746 CDS YP_001270030.1 148549928 5193171 complement(5293923..5294882) 1 NC_009512.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; chaperone DnaJ domain-containing protein 5294882 5193171 Pput_4726 Pseudomonas putida F1 chaperone DnaJ domain-containing protein YP_001270030.1 5293923 R 351746 CDS YP_001270031.1 148549929 5193172 5295047..5296318 1 NC_009512.1 molecular chaperone-like protein 5296318 5193172 Pput_4727 Pseudomonas putida F1 molecular chaperone-like protein YP_001270031.1 5295047 D 351746 CDS YP_001270032.1 148549930 5191242 complement(5296674..5297681) 1 NC_009512.1 hypothetical protein 5297681 5191242 Pput_4728 Pseudomonas putida F1 hypothetical protein YP_001270032.1 5296674 R 351746 CDS YP_001270033.1 148549931 5191243 complement(5297751..5298038) 1 NC_009512.1 PFAM: PsiF repeat protein; PsiF repeat-containing protein 5298038 5191243 Pput_4729 Pseudomonas putida F1 PsiF repeat-containing protein YP_001270033.1 5297751 R 351746 CDS YP_001270034.1 148549932 5192165 complement(5298102..5298890) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 5298890 5192165 Pput_4730 Pseudomonas putida F1 AraC family transcriptional regulator YP_001270034.1 5298102 R 351746 CDS YP_001270035.1 148549933 5192166 5299115..5299996 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 5299996 5192166 Pput_4731 Pseudomonas putida F1 hypothetical protein YP_001270035.1 5299115 D 351746 CDS YP_001270036.1 148549934 5191310 complement(5299998..5300888) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 5300888 5191310 Pput_4732 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001270036.1 5299998 R 351746 CDS YP_001270037.1 148549935 5191311 5301011..5301352 1 NC_009512.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5301352 5191311 Pput_4733 Pseudomonas putida F1 DNA-binding transcriptional activator OsmE YP_001270037.1 5301011 D 351746 CDS YP_001270038.1 148549936 5191841 5301396..5301926 1 NC_009512.1 PFAM: Rubrerythrin; Ferritin, Dps family protein; Ferritin, Dps family protein 5301926 5191841 Pput_4734 Pseudomonas putida F1 Ferritin, Dps family protein YP_001270038.1 5301396 D 351746 CDS YP_001270039.1 148549937 5191842 complement(5301965..5304031) 1 NC_009512.1 PFAM: AsmA family protein; AsmA family protein 5304031 5191842 Pput_4735 Pseudomonas putida F1 AsmA family protein YP_001270039.1 5301965 R 351746 CDS YP_001270040.1 148549938 5192621 5304372..5304869 1 NC_009512.1 hypothetical protein 5304869 5192621 Pput_4736 Pseudomonas putida F1 hypothetical protein YP_001270040.1 5304372 D 351746 CDS YP_001270041.1 148549939 5192622 5304959..5305627 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 5305627 5192622 Pput_4737 Pseudomonas putida F1 TetR family transcriptional regulator YP_001270041.1 5304959 D 351746 CDS YP_001270042.1 148549940 5194416 5305680..5306780 1 NC_009512.1 PFAM: N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 5306780 5194416 Pput_4738 Pseudomonas putida F1 N-acylglucosamine 2-epimerase YP_001270042.1 5305680 D 351746 CDS YP_001270043.1 148549941 5194417 5306875..5307123 1 NC_009512.1 hypothetical protein 5307123 5194417 Pput_4739 Pseudomonas putida F1 hypothetical protein YP_001270043.1 5306875 D 351746 CDS YP_001270044.1 148549942 5191223 complement(5307172..5307936) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 5307936 5191223 Pput_4740 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001270044.1 5307172 R 351746 CDS YP_001270045.1 148549943 5191224 complement(5308530..5309246) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5309246 5191224 Pput_4741 Pseudomonas putida F1 ABC transporter-like protein YP_001270045.1 5308530 R 351746 CDS YP_001270046.1 148549944 5192774 complement(5309243..5310118) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5310118 5192774 Pput_4742 Pseudomonas putida F1 ABC transporter-like protein YP_001270046.1 5309243 R 351746 CDS YP_001270047.1 148549945 5192775 complement(5310115..5311416) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 5311416 5192775 Pput_4743 Pseudomonas putida F1 inner-membrane translocator YP_001270047.1 5310115 R 351746 CDS YP_001270048.1 148549946 5191208 complement(5311419..5312333) 1 NC_009512.1 PFAM: inner-membrane translocator; inner-membrane translocator 5312333 5191208 Pput_4744 Pseudomonas putida F1 inner-membrane translocator YP_001270048.1 5311419 R 351746 CDS YP_001270049.1 148549947 5191209 complement(5312488..5313624) 1 NC_009512.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 5313624 5191209 Pput_4745 Pseudomonas putida F1 extracellular ligand-binding receptor YP_001270049.1 5312488 R 351746 CDS YP_001270050.1 148549948 5191695 5314137..5315342 1 NC_009512.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5315342 5191695 Pput_4746 Pseudomonas putida F1 nicotinate phosphoribosyltransferase YP_001270050.1 5314137 D 351746 CDS YP_001270051.1 148549949 5191696 5315346..5316173 1 NC_009512.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5316173 nadE 5191696 nadE Pseudomonas putida F1 NAD synthetase YP_001270051.1 5315346 D 351746 CDS YP_001270052.1 148549950 5191862 complement(5316284..5316736) 1 NC_009512.1 TIGRFAM: Azurin, proteobacteria; PFAM: blue (type 1) copper domain protein; azurin 5316736 5191862 Pput_4748 Pseudomonas putida F1 azurin YP_001270052.1 5316284 R 351746 CDS YP_001270053.1 148549951 5191863 5317083..5317670 1 NC_009512.1 PFAM: conserved hypothetical protein 730; hypothetical protein 5317670 5191863 Pput_4749 Pseudomonas putida F1 hypothetical protein YP_001270053.1 5317083 D 351746 CDS YP_001270054.1 148549952 5192948 complement(5317792..5320092) 1 NC_009512.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 5320092 5192948 Pput_4750 Pseudomonas putida F1 hypothetical protein YP_001270054.1 5317792 R 351746 CDS YP_001270055.1 148549953 5192949 complement(5320377..5320568) 1 NC_009512.1 hypothetical protein 5320568 5192949 Pput_4751 Pseudomonas putida F1 hypothetical protein YP_001270055.1 5320377 R 351746 CDS YP_001270056.1 148549954 5192534 5321220..5322374 1 NC_009512.1 PFAM: protein of unknown function DUF181; hypothetical protein 5322374 5192534 Pput_4752 Pseudomonas putida F1 hypothetical protein YP_001270056.1 5321220 D 351746 CDS YP_001270057.1 148549955 5192535 5322376..5324031 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5324031 5192535 Pput_4753 Pseudomonas putida F1 ABC transporter-like protein YP_001270057.1 5322376 D 351746 CDS YP_001270058.1 148549956 5194803 complement(5324056..5325453) 1 NC_009512.1 unwinds double stranded DNA; replicative DNA helicase 5325453 5194803 Pput_4754 Pseudomonas putida F1 replicative DNA helicase YP_001270058.1 5324056 R 351746 CDS YP_001270059.1 148549957 5194804 complement(5325567..5326013) 1 NC_009512.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 5326013 rplI 5194804 rplI Pseudomonas putida F1 50S ribosomal protein L9 YP_001270059.1 5325567 R 351746 CDS YP_001270060.1 148549958 5192982 complement(5326034..5326897) 1 NC_009512.1 hypothetical protein 5326897 5192982 Pput_4756 Pseudomonas putida F1 hypothetical protein YP_001270060.1 5326034 R 351746 CDS YP_001270061.1 148549959 5192983 complement(5326931..5327161) 1 NC_009512.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 5327161 rpsR 5192983 rpsR Pseudomonas putida F1 30S ribosomal protein S18 YP_001270061.1 5326931 R 351746 CDS YP_001270062.1 148549960 5192835 complement(5327190..5327615) 1 NC_009512.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 5327615 rpsF 5192835 rpsF Pseudomonas putida F1 30S ribosomal protein S6 YP_001270062.1 5327190 R 351746 CDS YP_001270063.1 148549961 5192836 complement(5327905..5328651) 1 NC_009512.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase 5328651 5192836 Pput_4759 Pseudomonas putida F1 RNA methyltransferase YP_001270063.1 5327905 R 351746 CDS YP_001270064.1 148549962 5192283 complement(5328648..5331221) 1 NC_009512.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 5331221 5192283 Pput_4760 Pseudomonas putida F1 ribonuclease R YP_001270064.1 5328648 R 351746 CDS YP_001270065.1 148549963 5191349 5332001..5333014 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5333014 5191349 Pput_4761 Pseudomonas putida F1 extracellular solute-binding protein YP_001270065.1 5332001 D 351746 CDS YP_001270066.1 148549964 5195443 5333014..5334579 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5334579 5195443 Pput_4762 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001270066.1 5333014 D 351746 CDS YP_001270067.1 148549965 5195444 complement(5334664..5335131) 1 NC_009512.1 hypothetical protein 5335131 5195444 Pput_4763 Pseudomonas putida F1 hypothetical protein YP_001270067.1 5334664 R 351746 CDS YP_001270068.1 148549966 5192273 complement(5335316..5337250) 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5337250 5192273 Pput_4764 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001270068.1 5335316 R 351746 CDS YP_001270069.1 148549967 5192274 complement(5337592..5338884) 1 NC_009512.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 5338884 5192274 Pput_4765 Pseudomonas putida F1 adenylosuccinate synthetase YP_001270069.1 5337592 R 351746 CDS YP_001270070.1 148549968 5195471 complement(5338941..5340128) 1 NC_009512.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 5340128 hisZ 5195471 hisZ Pseudomonas putida F1 ATP phosphoribosyltransferase regulatory subunit YP_001270070.1 5338941 R 351746 CDS YP_001270071.1 148549969 5195472 complement(5340430..5341299) 1 NC_009512.1 TIGRFAM: HflC protein; PFAM: band 7 protein; HflC protein 5341299 5195472 Pput_4767 Pseudomonas putida F1 HflC protein YP_001270071.1 5340430 R 351746 CDS YP_001270072.1 148549970 5195109 complement(5341299..5342480) 1 NC_009512.1 TIGRFAM: HflK protein; PFAM: band 7 protein; HflK protein 5342480 5195109 Pput_4768 Pseudomonas putida F1 HflK protein YP_001270072.1 5341299 R 351746 CDS YP_001270073.1 148549971 5195110 complement(5342577..5343878) 1 NC_009512.1 PFAM: GTP-binding protein, HSR1-related; HSR1-related GTP-binding protein 5343878 5195110 Pput_4769 Pseudomonas putida F1 HSR1-related GTP-binding protein YP_001270073.1 5342577 R 351746 CDS YP_001270074.1 148549972 5194710 complement(5343891..5344151) 1 NC_009512.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 5344151 hfq 5194710 hfq Pseudomonas putida F1 RNA-binding protein Hfq YP_001270074.1 5343891 R 351746 CDS YP_001270075.1 148549973 5194711 complement(5344246..5345217) 1 NC_009512.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 5345217 miaA 5194711 miaA Pseudomonas putida F1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001270075.1 5344246 R 351746 CDS YP_001270076.1 148549974 5191424 complement(5345219..5347120) 1 NC_009512.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 5347120 mutL 5191424 mutL Pseudomonas putida F1 DNA mismatch repair protein YP_001270076.1 5345219 R 351746 CDS YP_001270077.1 148549975 5191425 complement(5347117..5348547) 1 NC_009512.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 5348547 5191425 Pput_4773 Pseudomonas putida F1 N-acetylmuramoyl-L-alanine amidase YP_001270077.1 5347117 R 351746 CDS YP_001270078.1 148549976 5194105 complement(5348559..5349032) 1 NC_009512.1 PFAM: protein of unknown function UPF0079; hypothetical protein 5349032 5194105 Pput_4774 Pseudomonas putida F1 hypothetical protein YP_001270078.1 5348559 R 351746 CDS YP_001270079.1 148549977 5194106 complement(5349020..5349943) 1 NC_009512.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; carbohydrate kinase 5349943 5194106 Pput_4775 Pseudomonas putida F1 carbohydrate kinase YP_001270079.1 5349020 R 351746 CDS YP_001270080.1 148549978 5194141 5349946..5351010 1 NC_009512.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; putative iron-sulfur cluster binding protein 5351010 5194141 Pput_4776 Pseudomonas putida F1 putative iron-sulfur cluster binding protein YP_001270080.1 5349946 D 351746 CDS YP_001270081.1 148549979 5194142 complement(5351151..5351762) 1 NC_009512.1 PFAM: protein of unknown function UPF0126; hypothetical protein 5351762 5194142 Pput_4777 Pseudomonas putida F1 hypothetical protein YP_001270081.1 5351151 R 351746 CDS YP_001270082.1 148549980 5192663 complement(5351854..5352396) 1 NC_009512.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 5352396 5192663 Pput_4778 Pseudomonas putida F1 oligoribonuclease YP_001270082.1 5351854 R 351746 CDS YP_001270083.1 148549981 5192664 5352549..5353580 1 NC_009512.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5353580 5192664 Pput_4779 Pseudomonas putida F1 ribosome-associated GTPase YP_001270083.1 5352549 D 351746 CDS YP_001270084.1 148549982 5190941 complement(5353888..5354928) 1 NC_009512.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 5354928 motB 5190941 motB Pseudomonas putida F1 flagellar motor protein MotB YP_001270084.1 5353888 R 351746 CDS YP_001270085.1 148549983 5190942 complement(5354932..5355783) 1 NC_009512.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 5355783 5190942 Pput_4781 Pseudomonas putida F1 flagellar motor protein MotA YP_001270085.1 5354932 R 351746 CDS YP_001270086.1 148549984 5194664 5355914..5357449 1 NC_009512.1 PFAM: Metal-dependent hydrolase HDOD; metal-dependent hydrolase HDOD 5357449 5194664 Pput_4782 Pseudomonas putida F1 metal-dependent hydrolase HDOD YP_001270086.1 5355914 D 351746 CDS YP_001270087.1 148549985 5194665 5357494..5358303 1 NC_009512.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 5358303 5194665 Pput_4783 Pseudomonas putida F1 rhodanese domain-containing protein YP_001270087.1 5357494 D 351746 CDS YP_001270088.1 148549986 5195054 5358313..5359176 1 NC_009512.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5359176 psd 5195054 psd Pseudomonas putida F1 phosphatidylserine decarboxylase YP_001270088.1 5358313 D 351746 CDS YP_001270089.1 148549987 5195055 complement(5359253..5360467) 1 NC_009512.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase SerB 5360467 5195055 Pput_4785 Pseudomonas putida F1 phosphoserine phosphatase SerB YP_001270089.1 5359253 R 351746 CDS YP_001270090.1 148549988 5194219 5360602..5362059 1 NC_009512.1 hypothetical protein 5362059 5194219 Pput_4786 Pseudomonas putida F1 hypothetical protein YP_001270090.1 5360602 D 351746 CDS YP_001270091.1 148549989 5194220 complement(5362469..5363224) 1 NC_009512.1 PFAM: protein of unknown function DUF330; hypothetical protein 5363224 5194220 Pput_4787 Pseudomonas putida F1 hypothetical protein YP_001270091.1 5362469 R 351746 CDS YP_001270092.1 148549990 5194901 complement(5363352..5365610) 1 NC_009512.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 5365610 5194901 Pput_4788 Pseudomonas putida F1 DNA topoisomerase IV subunit A YP_001270092.1 5363352 R 351746 CDS YP_001270093.1 148549991 5194902 complement(5365621..5366139) 1 NC_009512.1 hypothetical protein 5366139 5194902 Pput_4789 Pseudomonas putida F1 hypothetical protein YP_001270093.1 5365621 R 351746 CDS YP_001270094.1 148549992 5191114 complement(5366136..5367122) 1 NC_009512.1 hypothetical protein 5367122 5191114 Pput_4790 Pseudomonas putida F1 hypothetical protein YP_001270094.1 5366136 R 351746 CDS YP_001270095.1 148549993 5191115 complement(5367119..5369023) 1 NC_009512.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 5369023 5191115 Pput_4791 Pseudomonas putida F1 DNA topoisomerase IV subunit B YP_001270095.1 5367119 R 351746 CDS YP_001270096.1 148549994 5190238 complement(5369059..5369667) 1 NC_009512.1 PFAM: protein of unknown function UPF0227; hypothetical protein 5369667 5190238 Pput_4792 Pseudomonas putida F1 hypothetical protein YP_001270096.1 5369059 R 351746 CDS YP_001270097.1 148549995 5190239 complement(5369909..5370709) 1 NC_009512.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 5370709 5190239 Pput_4793 Pseudomonas putida F1 calcineurin phosphoesterase C-terminal domain-containing protein YP_001270097.1 5369909 R 351746 CDS YP_001270098.1 148549996 5191981 complement(5370795..5371241) 1 NC_009512.1 PFAM: protein of unknown function DUF1249; hypothetical protein 5371241 5191981 Pput_4794 Pseudomonas putida F1 hypothetical protein YP_001270098.1 5370795 R 351746 CDS YP_001270099.1 148549997 5191982 complement(5371238..5371855) 1 NC_009512.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 5371855 5191982 Pput_4795 Pseudomonas putida F1 NUDIX hydrolase YP_001270099.1 5371238 R 351746 CDS YP_001270100.1 148549998 5190603 5372041..5372787 1 NC_009512.1 hypothetical protein 5372787 5190603 Pput_4796 Pseudomonas putida F1 hypothetical protein YP_001270100.1 5372041 D 351746 CDS YP_001270101.1 148549999 5190604 complement(5372756..5374039) 1 NC_009512.1 TIGRFAM: putative hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; putative hydroxymethylpyrimidine transporter CytX 5374039 5190604 Pput_4797 Pseudomonas putida F1 putative hydroxymethylpyrimidine transporter CytX YP_001270101.1 5372756 R 351746 CDS YP_001270102.1 148550000 5193663 complement(5374205..5376085) 1 NC_009512.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 5376085 5193663 Pput_4798 Pseudomonas putida F1 thiamine biosynthesis protein ThiC YP_001270102.1 5374205 R 351746 CDS YP_001270103.1 148550001 5193664 5376507..5377940 1 NC_009512.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 5377940 5193664 Pput_4799 Pseudomonas putida F1 TolC family type I secretion outer membrane protein YP_001270103.1 5376507 D 351746 CDS YP_001270104.1 148550002 5191936 complement(5378055..5379326) 1 NC_009512.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 5379326 5191936 Pput_4800 Pseudomonas putida F1 3-deoxy-D-manno-octulosonic-acid transferase YP_001270104.1 5378055 R 351746 CDS YP_001270105.1 148550003 5191937 complement(5379338..5380228) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5380228 5191937 Pput_4801 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270105.1 5379338 R 351746 CDS YP_001270106.1 148550004 5192306 5380315..5380647 1 NC_009512.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 5380647 5192306 Pput_4802 Pseudomonas putida F1 small multidrug resistance protein YP_001270106.1 5380315 D 351746 CDS YP_001270107.1 148550005 5192307 5380736..5381911 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 5381911 5192307 Pput_4803 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001270107.1 5380736 D 351746 CDS YP_001270108.1 148550006 5192090 5381908..5382720 1 NC_009512.1 PFAM: aldo/keto reductase; aldo/keto reductase 5382720 5192090 Pput_4804 Pseudomonas putida F1 aldo/keto reductase YP_001270108.1 5381908 D 351746 CDS YP_001270109.1 148550007 5192091 5382779..5383747 1 NC_009512.1 hypothetical protein 5383747 5192091 Pput_4805 Pseudomonas putida F1 hypothetical protein YP_001270109.1 5382779 D 351746 CDS YP_001270110.1 148550008 5193846 complement(5383829..5385250) 1 NC_009512.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 5385250 5193846 Pput_4806 Pseudomonas putida F1 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001270110.1 5383829 R 351746 CDS YP_001270111.1 148550009 5193847 complement(5385381..5387189) 1 NC_009512.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 5387189 5193847 Pput_4807 Pseudomonas putida F1 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_001270111.1 5385381 R 351746 CDS YP_001270112.1 148550010 5195317 complement(5387205..5388380) 1 NC_009512.1 PFAM: O-antigen polymerase; O-antigen polymerase 5388380 5195317 Pput_4808 Pseudomonas putida F1 O-antigen polymerase YP_001270112.1 5387205 R 351746 CDS YP_001270113.1 148550011 5195318 5388412..5389086 1 NC_009512.1 hypothetical protein 5389086 5195318 Pput_4809 Pseudomonas putida F1 hypothetical protein YP_001270113.1 5388412 D 351746 CDS YP_001270114.1 148550012 5194033 complement(5389090..5390181) 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 5390181 5194033 Pput_4810 Pseudomonas putida F1 group 1 glycosyl transferase YP_001270114.1 5389090 R 351746 CDS YP_001270115.1 148550013 5194034 complement(5390219..5390992) 1 NC_009512.1 hypothetical protein 5390992 5194034 Pput_4811 Pseudomonas putida F1 hypothetical protein YP_001270115.1 5390219 R 351746 CDS YP_001270116.1 148550014 5192976 complement(5391058..5392014) 1 NC_009512.1 hypothetical protein 5392014 5192976 Pput_4812 Pseudomonas putida F1 hypothetical protein YP_001270116.1 5391058 R 351746 CDS YP_001270117.1 148550015 5192977 complement(5392063..5393493) 1 NC_009512.1 PFAM: LmbE family protein; LmbE family protein 5393493 5192977 Pput_4813 Pseudomonas putida F1 LmbE family protein YP_001270117.1 5392063 R 351746 CDS YP_001270118.1 148550016 5192732 complement(5393463..5394359) 1 NC_009512.1 PFAM: Mig-14 family protein; Mig-14 family protein 5394359 5192732 Pput_4814 Pseudomonas putida F1 Mig-14 family protein YP_001270118.1 5393463 R 351746 CDS YP_001270119.1 148550017 5192733 complement(5394359..5395489) 1 NC_009512.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 5395489 5192733 Pput_4815 Pseudomonas putida F1 group 1 glycosyl transferase YP_001270119.1 5394359 R 351746 CDS YP_001270120.1 148550018 5191942 complement(5395473..5397230) 1 NC_009512.1 PFAM: Carbamoyltransferase; carbamoyltransferase 5397230 5191942 Pput_4816 Pseudomonas putida F1 carbamoyltransferase YP_001270120.1 5395473 R 351746 CDS YP_001270121.1 148550019 5191943 complement(5397423..5398259) 1 NC_009512.1 PFAM: protein of unknown function DUF519; hypothetical protein 5398259 5191943 Pput_4817 Pseudomonas putida F1 hypothetical protein YP_001270121.1 5397423 R 351746 CDS YP_001270122.1 148550020 5191829 complement(5398366..5399844) 1 NC_009512.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; sodium/proline symporter 5399844 5191829 Pput_4818 Pseudomonas putida F1 sodium/proline symporter YP_001270122.1 5398366 R 351746 CDS YP_001270123.1 148550021 5191830 5400200..5404153 1 NC_009512.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5404153 putA 5191830 putA Pseudomonas putida F1 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001270123.1 5400200 D 351746 CDS YP_001270124.1 148550022 5195523 complement(5404689..5405372) 1 NC_009512.1 hypothetical protein 5405372 5195523 Pput_4820 Pseudomonas putida F1 hypothetical protein YP_001270124.1 5404689 R 351746 CDS YP_001270125.1 148550023 5195524 5405514..5407316 1 NC_009512.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 5407316 5195524 Pput_4821 Pseudomonas putida F1 acyl-CoA dehydrogenase domain-containing protein YP_001270125.1 5405514 D 351746 CDS YP_001270126.1 148550024 5194326 5407348..5408790 1 NC_009512.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 5408790 5194326 Pput_4822 Pseudomonas putida F1 C69 family peptidase YP_001270126.1 5407348 D 351746 CDS YP_001270127.1 148550025 5194327 5408790..5410109 1 NC_009512.1 hypothetical protein 5410109 5194327 Pput_4823 Pseudomonas putida F1 hypothetical protein YP_001270127.1 5408790 D 351746 CDS YP_001270128.1 148550026 5195378 5410219..5411646 1 NC_009512.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 5411646 5195378 Pput_4824 Pseudomonas putida F1 EmrB/QacA family drug resistance transporter YP_001270128.1 5410219 D 351746 CDS YP_001270129.1 148550027 5195379 5411612..5413096 1 NC_009512.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5413096 5195379 Pput_4825 Pseudomonas putida F1 ATP-dependent RNA helicase DbpA YP_001270129.1 5411612 D 351746 CDS YP_001270130.1 148550028 5192369 5413219..5414400 1 NC_009512.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 5414400 5192369 Pput_4826 Pseudomonas putida F1 hypothetical protein YP_001270130.1 5413219 D 351746 CDS YP_001270131.1 148550029 5192370 5414612..5416795 1 NC_009512.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; YccS/YhfK family integral membrane protein 5416795 5192370 Pput_4827 Pseudomonas putida F1 YccS/YhfK family integral membrane protein YP_001270131.1 5414612 D 351746 CDS YP_001270132.1 148550030 5193026 complement(5416814..5417512) 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 5417512 5193026 Pput_4828 Pseudomonas putida F1 extracellular solute-binding protein YP_001270132.1 5416814 R 351746 CDS YP_001270133.1 148550031 5193027 5417705..5418157 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5418157 5193027 Pput_4829 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001270133.1 5417705 D 351746 CDS YP_001270134.1 148550032 5194648 complement(5418274..5418570) 1 NC_009512.1 hypothetical protein 5418570 5194648 Pput_4830 Pseudomonas putida F1 hypothetical protein YP_001270134.1 5418274 R 351746 CDS YP_001270135.1 148550033 5194649 complement(5418583..5419122) 1 NC_009512.1 PFAM: protein of unknown function DUF45; hypothetical protein 5419122 5194649 Pput_4831 Pseudomonas putida F1 hypothetical protein YP_001270135.1 5418583 R 351746 CDS YP_001270136.1 148550034 5193346 complement(5419123..5421249) 1 NC_009512.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5421249 5193346 Pput_4832 Pseudomonas putida F1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001270136.1 5419123 R 351746 CDS YP_001270137.1 148550035 5193347 complement(5421462..5422526) 1 NC_009512.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 5422526 5193347 Pput_4833 Pseudomonas putida F1 fructose-1,6-bisphosphate aldolase YP_001270137.1 5421462 R 351746 CDS YP_001270138.1 148550036 5194383 complement(5422627..5422956) 1 NC_009512.1 hypothetical protein 5422956 5194383 Pput_4834 Pseudomonas putida F1 hypothetical protein YP_001270138.1 5422627 R 351746 CDS YP_001270139.1 148550037 5194384 complement(5423035..5423286) 1 NC_009512.1 hypothetical protein 5423286 5194384 Pput_4835 Pseudomonas putida F1 hypothetical protein YP_001270139.1 5423035 R 351746 CDS YP_001270140.1 148550038 5192907 complement(5423286..5424449) 1 NC_009512.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 5424449 pgk 5192907 pgk Pseudomonas putida F1 phosphoglycerate kinase YP_001270140.1 5423286 R 351746 CDS YP_001270141.1 148550039 5192908 complement(5424462..5425523) 1 NC_009512.1 TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 5425523 5192908 Pput_4837 Pseudomonas putida F1 D-erythrose-4-phosphate dehydrogenase YP_001270141.1 5424462 R 351746 CDS YP_001270142.1 148550040 5192695 complement(5425714..5427711) 1 NC_009512.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 5427711 5192695 Pput_4838 Pseudomonas putida F1 transketolase YP_001270142.1 5425714 R 351746 CDS YP_001270143.1 148550041 5192696 5427963..5428955 1 NC_009512.1 PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12; ArsR family transcriptional regulator 5428955 5192696 Pput_4839 Pseudomonas putida F1 ArsR family transcriptional regulator YP_001270143.1 5427963 D 351746 CDS YP_001270144.1 148550042 5191825 5428974..5430164 1 NC_009512.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5430164 5191825 Pput_4840 Pseudomonas putida F1 S-adenosylmethionine synthetase YP_001270144.1 5428974 D 351746 CDS YP_001270145.1 148550043 5191826 5430394..5432094 1 NC_009512.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5432094 ligB 5191826 ligB Pseudomonas putida F1 NAD-dependent DNA ligase LigB YP_001270145.1 5430394 D 351746 CDS YP_001270146.1 148550044 5192994 5432227..5432619 1 NC_009512.1 PFAM: protein of unknown function DUF1090; hypothetical protein 5432619 5192994 Pput_4842 Pseudomonas putida F1 hypothetical protein YP_001270146.1 5432227 D 351746 CDS YP_001270147.1 148550045 5192995 complement(5432808..5433266) 1 NC_009512.1 PFAM: cytochrome c, class II; cytochrome c, class II 5433266 5192995 Pput_4843 Pseudomonas putida F1 cytochrome c, class II YP_001270147.1 5432808 R 351746 CDS YP_001270148.1 148550046 5190949 5433359..5434537 1 NC_009512.1 PFAM: MltA domain protein; 3D domain protein; MltA domain-containing protein 5434537 5190949 Pput_4844 Pseudomonas putida F1 MltA domain-containing protein YP_001270148.1 5433359 D 351746 CDS YP_001270149.1 148550047 5190950 complement(5434588..5434974) 1 NC_009512.1 hypothetical protein 5434974 5190950 Pput_4845 Pseudomonas putida F1 hypothetical protein YP_001270149.1 5434588 R 351746 CDS YP_001270150.1 148550048 5194328 complement(5435003..5435836) 1 NC_009512.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 5435836 5194328 Pput_4846 Pseudomonas putida F1 hypothetical protein YP_001270150.1 5435003 R 351746 CDS YP_001270151.1 148550049 5194329 5436119..5437354 1 NC_009512.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 5437354 5194329 Pput_4847 Pseudomonas putida F1 sodium/hydrogen exchanger YP_001270151.1 5436119 D 351746 CDS YP_001270152.1 148550050 5195202 complement(5437467..5437868) 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 5437868 5195202 Pput_4848 Pseudomonas putida F1 thioesterase superfamily protein YP_001270152.1 5437467 R 351746 CDS YP_001270153.1 148550051 5195203 5438164..5439573 1 NC_009512.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 5439573 5195203 Pput_4849 Pseudomonas putida F1 S-adenosyl-L-homocysteine hydrolase YP_001270153.1 5438164 D 351746 CDS YP_001270154.1 148550052 5195141 5439740..5440585 1 NC_009512.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 5440585 5195141 Pput_4850 Pseudomonas putida F1 5,10-methylenetetrahydrofolate reductase YP_001270154.1 5439740 D 351746 CDS YP_001270155.1 148550053 5195142 5440679..5441755 1 NC_009512.1 hypothetical protein 5441755 5195142 Pput_4851 Pseudomonas putida F1 hypothetical protein YP_001270155.1 5440679 D 351746 CDS YP_001270156.1 148550054 5190647 5441925..5442713 1 NC_009512.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 5442713 5190647 Pput_4852 Pseudomonas putida F1 extracellular solute-binding protein YP_001270156.1 5441925 D 351746 CDS YP_001270157.1 148550055 5190648 5442932..5444815 1 NC_009512.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 5444815 5190648 Pput_4853 Pseudomonas putida F1 DEAD/DEAH box helicase YP_001270157.1 5442932 D 351746 CDS YP_001270158.1 148550056 5195226 complement(5444956..5445534) 1 NC_009512.1 PFAM: YceI family protein; hypothetical protein 5445534 5195226 Pput_4854 Pseudomonas putida F1 hypothetical protein YP_001270158.1 5444956 R 351746 CDS YP_001270159.1 148550057 5195227 complement(5445567..5446118) 1 NC_009512.1 PFAM: cytochrome B561; cytochrome B561 5446118 5195227 Pput_4855 Pseudomonas putida F1 cytochrome B561 YP_001270159.1 5445567 R 351746 CDS YP_001270160.1 148550058 5194463 complement(5446318..5448177) 1 NC_009512.1 PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 5448177 5194463 Pput_4856 Pseudomonas putida F1 amine oxidase YP_001270160.1 5446318 R 351746 CDS YP_001270161.1 148550059 5194464 5448225..5448878 1 NC_009512.1 hypothetical protein 5448878 5194464 Pput_4857 Pseudomonas putida F1 hypothetical protein YP_001270161.1 5448225 D 351746 CDS YP_001270162.1 148550060 5194582 5448958..5450364 1 NC_009512.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5450364 5194582 Pput_4858 Pseudomonas putida F1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001270162.1 5448958 D 351746 CDS YP_001270163.1 148550061 5194583 5450513..5451232 1 NC_009512.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5451232 5194583 Pput_4859 Pseudomonas putida F1 16S ribosomal RNA methyltransferase RsmE YP_001270163.1 5450513 D 351746 CDS YP_001270164.1 148550062 5191234 complement(5451233..5451850) 1 NC_009512.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein 5451850 5191234 Pput_4860 Pseudomonas putida F1 hemolysin III family channel protein YP_001270164.1 5451233 R 351746 CDS YP_001270165.1 148550063 5191235 complement(5452058..5452531) 1 NC_009512.1 PFAM: CheW domain protein; CheW domain-containing protein 5452531 5191235 Pput_4861 Pseudomonas putida F1 CheW domain-containing protein YP_001270165.1 5452058 R 351746 CDS YP_001270166.1 148550064 5194129 complement(5452524..5457464) 1 NC_009512.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; CheA signal transduction histidine kinase 5457464 5194129 Pput_4862 Pseudomonas putida F1 CheA signal transduction histidine kinase YP_001270166.1 5452524 R 351746 CDS YP_001270167.1 148550065 5194130 complement(5457477..5459537) 1 NC_009512.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5459537 5194130 Pput_4863 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001270167.1 5457477 R 351746 CDS YP_001270168.1 148550066 5193735 complement(5459549..5460103) 1 NC_009512.1 PFAM: CheW domain protein; putative CheW protein 5460103 5193735 Pput_4864 Pseudomonas putida F1 putative CheW protein YP_001270168.1 5459549 R 351746 CDS YP_001270169.1 148550067 5193736 complement(5460100..5460465) 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 5460465 5193736 Pput_4865 Pseudomonas putida F1 response regulator receiver protein YP_001270169.1 5460100 R 351746 CDS YP_001270170.1 148550068 5192532 complement(5460513..5460914) 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 5460914 5192532 Pput_4866 Pseudomonas putida F1 response regulator receiver protein YP_001270170.1 5460513 R 351746 CDS YP_001270171.1 148550069 5192533 5461153..5462106 1 NC_009512.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5462106 5192533 Pput_4867 Pseudomonas putida F1 glutathione synthetase YP_001270171.1 5461153 D 351746 CDS YP_001270172.1 148550070 5193183 5462198..5463103 1 NC_009512.1 TIGRFAM: TonB family protein; TonB family protein 5463103 5193183 Pput_4868 Pseudomonas putida F1 TonB family protein YP_001270172.1 5462198 D 351746 CDS YP_001270173.1 148550071 5193184 5463268..5463837 1 NC_009512.1 PFAM: protein of unknown function DUF179; hypothetical protein 5463837 5193184 Pput_4869 Pseudomonas putida F1 hypothetical protein YP_001270173.1 5463268 D 351746 CDS YP_001270174.1 148550072 5190919 5463837..5464262 1 NC_009512.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5464262 5190919 Pput_4870 Pseudomonas putida F1 Holliday junction resolvase-like protein YP_001270174.1 5463837 D 351746 CDS YP_001270175.1 148550073 5190920 5464312..5464830 1 NC_009512.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5464830 5190920 Pput_4871 Pseudomonas putida F1 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001270175.1 5464312 D 351746 CDS YP_001270176.1 148550074 5192718 5464843..5465847 1 NC_009512.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 5465847 pyrB 5192718 pyrB Pseudomonas putida F1 aspartate carbamoyltransferase catalytic subunit YP_001270176.1 5464843 D 351746 CDS YP_001270177.1 148550075 5192719 5465844..5467115 1 NC_009512.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5467115 pyrC 5192719 pyrC Pseudomonas putida F1 dihydroorotase YP_001270177.1 5465844 D 351746 CDS YP_001270178.2 229328216 5192548 5467587..5468117 1 NC_009512.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5468117 5192548 Pput_4874 Pseudomonas putida F1 ATP-dependent protease peptidase subunit YP_001270178.2 5467587 D 351746 CDS YP_001270179.1 148550077 5192549 5468194..5469537 1 NC_009512.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5469537 hslU 5192549 hslU Pseudomonas putida F1 ATP-dependent protease ATP-binding subunit HslU YP_001270179.1 5468194 D 351746 CDS YP_001270180.1 148550078 5191027 5469626..5470081 1 NC_009512.1 PFAM: protein of unknown function DUF971; hypothetical protein 5470081 5191027 Pput_4876 Pseudomonas putida F1 hypothetical protein YP_001270180.1 5469626 D 351746 CDS YP_001270181.1 148550079 5191028 5470350..5472029 1 NC_009512.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; class II poly(R)-hydroxyalkanoic acid synthase 5472029 5191028 Pput_4877 Pseudomonas putida F1 class II poly(R)-hydroxyalkanoic acid synthase YP_001270181.1 5470350 D 351746 CDS YP_001270182.1 148550080 5191096 5472026..5472943 1 NC_009512.1 TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; poly(3-hydroxyalkanoate) depolymerase 5472943 5191096 Pput_4878 Pseudomonas putida F1 poly(3-hydroxyalkanoate) depolymerase YP_001270182.1 5472026 D 351746 CDS YP_001270183.1 148550081 5191097 5472993..5474675 1 NC_009512.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; class II poly(R)-hydroxyalkanoic acid synthase 5474675 5191097 Pput_4879 Pseudomonas putida F1 class II poly(R)-hydroxyalkanoic acid synthase YP_001270183.1 5472993 D 351746 CDS YP_001270184.1 148550082 5194992 5474688..5475302 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 5475302 5194992 Pput_4880 Pseudomonas putida F1 TetR family transcriptional regulator YP_001270184.1 5474688 D 351746 CDS YP_001270185.1 148550083 5194993 complement(5475414..5476199) 1 NC_009512.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein 5476199 5194993 Pput_4881 Pseudomonas putida F1 poly(hydroxyalkanoate) granule-associated protein YP_001270185.1 5475414 R 351746 CDS YP_001270186.1 148550084 5190754 complement(5476210..5476629) 1 NC_009512.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein 5476629 5190754 Pput_4882 Pseudomonas putida F1 poly(hydroxyalkanoate) granule-associated protein YP_001270186.1 5476210 R 351746 CDS YP_001270187.1 148550085 5190755 5476809..5481569 1 NC_009512.1 hypothetical protein 5481569 5190755 Pput_4883 Pseudomonas putida F1 hypothetical protein YP_001270187.1 5476809 D 351746 CDS YP_001270188.1 148550086 5191328 complement(5481588..5481917) 1 NC_009512.1 TIGRFAM: putative polyhydroxyalkanoic acid system protein; putative polyhydroxyalkanoic acid system protein 5481917 5191328 Pput_4884 Pseudomonas putida F1 putative polyhydroxyalkanoic acid system protein YP_001270188.1 5481588 R 351746 CDS YP_001270189.1 148550087 5191329 5481988..5482758 1 NC_009512.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5482758 ubiE 5191329 ubiE Pseudomonas putida F1 ubiquinone/menaquinone biosynthesis methyltransferase YP_001270189.1 5481988 D 351746 CDS YP_001270190.1 148550088 5190310 5482758..5483381 1 NC_009512.1 PFAM: protein of unknown function DUF1243; hypothetical protein 5483381 5190310 Pput_4886 Pseudomonas putida F1 hypothetical protein YP_001270190.1 5482758 D 351746 CDS YP_001270191.1 148550089 5190311 5483378..5485000 1 NC_009512.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; 2-polyprenylphenol 6-hydroxylase 5485000 5190311 Pput_4887 Pseudomonas putida F1 2-polyprenylphenol 6-hydroxylase YP_001270191.1 5483378 D 351746 CDS YP_001270192.1 148550090 5190894 5485073..5485465 1 NC_009512.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5485465 hisI 5190894 hisI Pseudomonas putida F1 phosphoribosyl-AMP cyclohydrolase YP_001270192.1 5485073 D 351746 CDS YP_001270193.1 148550091 5190895 5485467..5485802 1 NC_009512.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5485802 hisE 5190895 hisE Pseudomonas putida F1 phosphoribosyl-ATP pyrophosphatase YP_001270193.1 5485467 D 351746 CDS YP_001270194.1 148550092 5190665 5485828..5486100 1 NC_009512.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 5486100 tatA 5190665 tatA Pseudomonas putida F1 twin arginine translocase protein A YP_001270194.1 5485828 D 351746 CDS YP_001270195.1 148550093 5190666 5486104..5486481 1 NC_009512.1 Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5486481 tatB 5190666 tatB Pseudomonas putida F1 sec-independent translocase YP_001270195.1 5486104 D 351746 CDS YP_001270196.1 148550094 5195328 5486478..5487266 1 NC_009512.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 5487266 5195328 Pput_4892 Pseudomonas putida F1 Sec-independent protein translocase subunit TatC YP_001270196.1 5486478 D 351746 CDS YP_001270197.1 148550095 5195329 5487263..5487970 1 NC_009512.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5487970 5195329 Pput_4893 Pseudomonas putida F1 16S ribosomal RNA methyltransferase RsmE YP_001270197.1 5487263 D 351746 CDS YP_001270198.1 148550096 5194368 5488072..5489988 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5489988 5194368 Pput_4894 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001270198.1 5488072 D 351746 CDS YP_001270199.1 148550097 5194369 5490448..5492667 1 NC_009512.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5492667 5194369 Pput_4895 Pseudomonas putida F1 methyl-accepting chemotaxis sensory transducer YP_001270199.1 5490448 D 351746 CDS YP_001270200.1 148550098 5192560 complement(5492777..5493511) 1 NC_009512.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5493511 5192560 Pput_4896 Pseudomonas putida F1 ABC transporter-like protein YP_001270200.1 5492777 R 351746 CDS YP_001270201.1 148550099 5192561 complement(5493504..5494466) 1 NC_009512.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 5494466 5192561 Pput_4897 Pseudomonas putida F1 polar amino acid ABC transporter inner membrane subunit YP_001270201.1 5493504 R 351746 CDS YP_001270202.1 148550100 5194624 complement(5494546..5495346) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein 5495346 5194624 Pput_4898 Pseudomonas putida F1 extracellular solute-binding protein YP_001270202.1 5494546 R 351746 CDS YP_001270203.1 148550101 5194625 complement(5495684..5498257) 1 NC_009512.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 5498257 5194625 Pput_4899 Pseudomonas putida F1 glucosyltransferase MdoH YP_001270203.1 5495684 R 351746 CDS YP_001270204.1 148550102 5195124 complement(5498250..5499989) 1 NC_009512.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 5499989 mdoG 5195124 mdoG Pseudomonas putida F1 glucan biosynthesis protein G YP_001270204.1 5498250 R 351746 CDS YP_001270205.1 148550103 5195125 complement(5500253..5500690) 1 NC_009512.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 5500690 5195125 Pput_4901 Pseudomonas putida F1 D-tyrosyl-tRNA(Tyr) deacylase YP_001270205.1 5500253 R 351746 CDS YP_001270206.1 148550104 5192689 complement(5500687..5501658) 1 NC_009512.1 TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 5501658 5192689 Pput_4902 Pseudomonas putida F1 proline iminopeptidase YP_001270206.1 5500687 R 351746 CDS YP_001270207.1 148550105 5192690 complement(5501828..5502631) 1 NC_009512.1 PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 5502631 5192690 Pput_4903 Pseudomonas putida F1 N-formylglutamate amidohydrolase YP_001270207.1 5501828 R 351746 CDS YP_001270208.1 148550106 5193037 complement(5502642..5503847) 1 NC_009512.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 5503847 5193037 Pput_4904 Pseudomonas putida F1 imidazolonepropionase YP_001270208.1 5502642 R 351746 CDS YP_001270209.1 148550107 5193038 complement(5503863..5505266) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 5505266 5193038 Pput_4905 Pseudomonas putida F1 amino acid permease-associated protein YP_001270209.1 5503863 R 351746 CDS YP_001270210.1 148550108 5193301 complement(5505424..5506956) 1 NC_009512.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 5506956 5193301 Pput_4906 Pseudomonas putida F1 histidine ammonia-lyase YP_001270210.1 5505424 R 351746 CDS YP_001270211.1 148550109 5193302 complement(5507065..5508738) 1 NC_009512.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 5508738 5193302 Pput_4907 Pseudomonas putida F1 urocanate hydratase YP_001270211.1 5507065 R 351746 CDS YP_001270212.1 148550110 5190661 complement(5508982..5509554) 1 NC_009512.1 PFAM: protein of unknown function DUF886; hypothetical protein 5509554 5190661 Pput_4908 Pseudomonas putida F1 hypothetical protein YP_001270212.1 5508982 R 351746 CDS YP_001270213.1 148550111 5190662 complement(5509551..5510297) 1 NC_009512.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 5510297 5190662 Pput_4909 Pseudomonas putida F1 GntR family transcriptional regulator YP_001270213.1 5509551 R 351746 CDS YP_001270214.1 148550112 5193179 5510406..5511770 1 NC_009512.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5511770 5193179 Pput_4910 Pseudomonas putida F1 N-formimino-L-glutamate deiminase YP_001270214.1 5510406 D 351746 CDS YP_001270215.1 148550113 5193180 complement(5511926..5512498) 1 NC_009512.1 PFAM: Lipocalin family protein; lipocalin family protein 5512498 5193180 Pput_4911 Pseudomonas putida F1 lipocalin family protein YP_001270215.1 5511926 R 351746 CDS YP_001270216.1 148550114 5192528 complement(5512495..5512749) 1 NC_009512.1 hypothetical protein 5512749 5192528 Pput_4912 Pseudomonas putida F1 hypothetical protein YP_001270216.1 5512495 R 351746 CDS YP_001270217.1 148550115 5192529 complement(5512977..5513573) 1 NC_009512.1 PFAM: protein of unknown function DUF924; hypothetical protein 5513573 5192529 Pput_4913 Pseudomonas putida F1 hypothetical protein YP_001270217.1 5512977 R 351746 CDS YP_001270218.1 148550116 5192974 complement(5513577..5514587) 1 NC_009512.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 5514587 5192974 Pput_4914 Pseudomonas putida F1 fructose-1,6-bisphosphatase YP_001270218.1 5513577 R 351746 CDS YP_001270219.1 148550117 5192975 complement(5514825..5517275) 1 NC_009512.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 5517275 5192975 Pput_4915 Pseudomonas putida F1 glycogen/starch/alpha-glucan phosphorylase YP_001270219.1 5514825 R 351746 CDS YP_001270220.1 148550118 5194221 5517460..5517864 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 5517864 5194221 Pput_4916 Pseudomonas putida F1 hypothetical protein YP_001270220.1 5517460 D 351746 CDS YP_001270221.1 148550119 5194222 complement(5517963..5519384) 1 NC_009512.1 PhoPQ-activated pathogenicity-like protein 5519384 5194222 Pput_4917 Pseudomonas putida F1 PhoPQ-activated pathogenicity-like protein YP_001270221.1 5517963 R 351746 CDS YP_001270222.1 148550120 5193466 complement(5519570..5521390) 1 NC_009512.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; GTP-binding protein TypA 5521390 5193466 Pput_4918 Pseudomonas putida F1 GTP-binding protein TypA YP_001270222.1 5519570 R 351746 CDS YP_001270223.1 148550121 5193467 complement(5521519..5522973) 1 NC_009512.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 5522973 5193467 Pput_4919 Pseudomonas putida F1 thiamine biosynthesis protein ThiI YP_001270223.1 5521519 R 351746 CDS YP_001270224.1 148550122 5190880 5523424..5524830 1 NC_009512.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase 5524830 5190880 Pput_4920 Pseudomonas putida F1 glutamine synthetase YP_001270224.1 5523424 D 351746 CDS YP_001270225.1 148550123 5190881 5524979..5525521 1 NC_009512.1 TIGRFAM: chorismate mutase, putative; PFAM: Chorismate mutase; chorismate mutase 5525521 5190881 Pput_4921 Pseudomonas putida F1 chorismate mutase YP_001270225.1 5524979 D 351746 CDS YP_001270226.1 148550124 5192048 5525789..5526874 1 NC_009512.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; nitrogen-specific signal transduction histidine kinase NtrB 5526874 5192048 Pput_4922 Pseudomonas putida F1 nitrogen-specific signal transduction histidine kinase NtrB YP_001270226.1 5525789 D 351746 CDS YP_001270227.1 148550125 5192049 5526871..5528307 1 NC_009512.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 5528307 5192049 Pput_4923 Pseudomonas putida F1 nitrogen metabolism transcriptional regulator NtrC YP_001270227.1 5526871 D 351746 CDS YP_001270228.1 148550126 5192501 complement(5528767..5529204) 1 NC_009512.1 hypothetical protein 5529204 5192501 Pput_4924 Pseudomonas putida F1 hypothetical protein YP_001270228.1 5528767 R 351746 CDS YP_001270229.1 148550127 5192502 5529203..5529664 1 NC_009512.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 5529664 5192502 Pput_4925 Pseudomonas putida F1 RNA methyltransferase YP_001270229.1 5529203 D 351746 CDS YP_001270230.1 148550128 5192390 complement(5529817..5530302) 1 NC_009512.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 5530302 5192390 Pput_4926 Pseudomonas putida F1 preprotein translocase subunit SecB YP_001270230.1 5529817 R 351746 CDS YP_001270231.1 148550129 5192391 complement(5530342..5530596) 1 NC_009512.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 5530596 5192391 Pput_4927 Pseudomonas putida F1 glutaredoxin 3 YP_001270231.1 5530342 R 351746 CDS YP_001270232.1 148550130 5191229 complement(5530598..5531011) 1 NC_009512.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 5531011 5191229 Pput_4928 Pseudomonas putida F1 rhodanese domain-containing protein YP_001270232.1 5530598 R 351746 CDS YP_001270233.1 148550131 5191230 5531219..5532754 1 NC_009512.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5532754 5191230 Pput_4929 Pseudomonas putida F1 phosphoglyceromutase YP_001270233.1 5531219 D 351746 CDS YP_001270234.1 148550132 5192921 5532895..5534211 1 NC_009512.1 PFAM: peptidase M23B; peptidase M23B 5534211 5192921 Pput_4930 Pseudomonas putida F1 peptidase M23B YP_001270234.1 5532895 D 351746 CDS YP_001270235.1 148550133 5192922 5534446..5535762 1 NC_009512.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 5535762 5192922 Pput_4931 Pseudomonas putida F1 carboxyl-terminal protease YP_001270235.1 5534446 D 351746 CDS YP_001270236.1 148550134 5195475 5535771..5536538 1 NC_009512.1 PFAM: protein of unknown function DUF610, YibQ; hypothetical protein 5536538 5195475 Pput_4932 Pseudomonas putida F1 hypothetical protein YP_001270236.1 5535771 D 351746 CDS YP_001270237.1 148550135 5195476 complement(5536578..5541170) 1 NC_009512.1 hypothetical protein 5541170 5195476 Pput_4933 Pseudomonas putida F1 hypothetical protein YP_001270237.1 5536578 R 351746 CDS YP_001270238.1 148550136 5195362 complement(5541381..5543384) 1 NC_009512.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 5543384 5195362 Pput_4934 Pseudomonas putida F1 choline/carnitine/betaine transporter YP_001270238.1 5541381 R 351746 CDS YP_001270239.1 148550137 5195363 5543860..5544516 1 NC_009512.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 5544516 5195363 Pput_4935 Pseudomonas putida F1 transcriptional regulator BetI YP_001270239.1 5543860 D 351746 CDS YP_001270240.1 148550138 5194006 5544556..5546028 1 NC_009512.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5546028 5194006 Pput_4936 Pseudomonas putida F1 betaine aldehyde dehydrogenase YP_001270240.1 5544556 D 351746 CDS YP_001270241.1 148550139 5194007 5546106..5547803 1 NC_009512.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5547803 5194007 Pput_4937 Pseudomonas putida F1 choline dehydrogenase YP_001270241.1 5546106 D 351746 CDS YP_001270242.1 148550140 5193518 complement(5547846..5549996) 1 NC_009512.1 hypothetical protein 5549996 5193518 Pput_4938 Pseudomonas putida F1 hypothetical protein YP_001270242.1 5547846 R 351746 CDS YP_001270243.1 148550141 5193519 5550174..5551916 1 NC_009512.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5551916 5193519 Pput_4939 Pseudomonas putida F1 potassium/proton antiporter YP_001270243.1 5550174 D 351746 CDS YP_001270244.1 148550142 5193746 5551952..5555260 1 NC_009512.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5555260 5193746 Pput_4940 Pseudomonas putida F1 potassium efflux protein KefA YP_001270244.1 5551952 D 351746 CDS YP_001270245.1 148550143 5193747 5555423..5556883 1 NC_009512.1 PFAM: protein of unknown function UPF0061; hypothetical protein 5556883 5193747 Pput_4941 Pseudomonas putida F1 hypothetical protein YP_001270245.1 5555423 D 351746 CDS YP_001270246.1 148550144 5192815 5557014..5557448 1 NC_009512.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 5557448 5192815 Pput_4942 Pseudomonas putida F1 thioredoxin YP_001270246.1 5557014 D 351746 CDS YP_001270247.1 148550145 5192816 complement(5557445..5558218) 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 5558218 5192816 Pput_4943 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001270247.1 5557445 R 351746 CDS YP_001270248.1 148550146 5191966 complement(5558295..5559194) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5559194 5191966 Pput_4944 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270248.1 5558295 R 351746 CDS YP_001270249.1 148550147 5191967 5559303..5560547 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5560547 5191967 Pput_4945 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270249.1 5559303 D 351746 CDS YP_001270250.1 148550148 5192333 complement(5560615..5560962) 1 NC_009512.1 PFAM: conserved hypothetical protein 156; hypothetical protein 5560962 5192333 Pput_4946 Pseudomonas putida F1 hypothetical protein YP_001270250.1 5560615 R 351746 CDS YP_001270251.1 148550149 5192334 complement(5561081..5562145) 1 NC_009512.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 5562145 hemE 5192334 hemE Pseudomonas putida F1 uroporphyrinogen decarboxylase YP_001270251.1 5561081 R 351746 CDS YP_001270252.1 148550150 5190873 complement(5562340..5563758) 1 NC_009512.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 5563758 gltD 5190873 gltD Pseudomonas putida F1 glutamate synthase subunit beta YP_001270252.1 5562340 R 351746 CDS YP_001270253.1 148550151 5190874 complement(5563882..5568327) 1 NC_009512.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 5568327 gltB 5190874 gltB Pseudomonas putida F1 glutamate synthase subunit alpha YP_001270253.1 5563882 R 351746 CDS YP_001270254.1 148550152 5193552 complement(5568701..5570302) 1 NC_009512.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 5570302 5193552 Pput_4950 Pseudomonas putida F1 sporulation domain-containing protein YP_001270254.1 5568701 R 351746 CDS YP_001270255.1 148550153 5193553 complement(5570318..5571415) 1 NC_009512.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 5571415 aroB 5193553 aroB Pseudomonas putida F1 3-dehydroquinate synthase YP_001270255.1 5570318 R 351746 CDS YP_001270256.1 148550154 5191787 complement(5571512..5572030) 1 NC_009512.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 5572030 aroK 5191787 aroK Pseudomonas putida F1 shikimate kinase YP_001270256.1 5571512 R 351746 CDS YP_001270257.1 148550155 5191788 complement(5572035..5573297) 1 NC_009512.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; type IV pilus secretin PilQ 5573297 5191788 Pput_4953 Pseudomonas putida F1 type IV pilus secretin PilQ YP_001270257.1 5572035 R 351746 CDS YP_001270258.1 148550156 5191996 complement(5573221..5574222) 1 NC_009512.1 hypothetical protein 5574222 5191996 Pput_4954 Pseudomonas putida F1 hypothetical protein YP_001270258.1 5573221 R 351746 CDS YP_001270259.1 148550157 5191997 complement(5574234..5574770) 1 NC_009512.1 PFAM: Fimbrial assembly family protein; fimbrial assembly family protein 5574770 5191997 Pput_4955 Pseudomonas putida F1 fimbrial assembly family protein YP_001270259.1 5574234 R 351746 CDS YP_001270260.1 148550158 5194436 complement(5574767..5575648) 1 NC_009512.1 Tfp pilus assembly protein ATPase PilM-like protein 5575648 5194436 Pput_4956 Pseudomonas putida F1 Tfp pilus assembly protein ATPase PilM-like protein YP_001270260.1 5574767 R 351746 CDS YP_001270261.1 148550159 5194437 5575852..5578305 1 NC_009512.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 5578305 5194437 Pput_4957 Pseudomonas putida F1 1A family penicillin-binding protein YP_001270261.1 5575852 D 351746 CDS YP_001270262.1 148550160 5191549 complement(5578487..5579764) 1 NC_009512.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; malate dehydrogenase 5579764 5191549 Pput_4958 Pseudomonas putida F1 malate dehydrogenase YP_001270262.1 5578487 R 351746 CDS YP_001270263.1 148550161 5191550 complement(5579933..5580754) 1 NC_009512.1 PFAM: nuclease (SNase domain protein); nuclease 5580754 5191550 Pput_4959 Pseudomonas putida F1 nuclease YP_001270263.1 5579933 R 351746 CDS YP_001270264.1 148550162 5191893 complement(5580757..5581059) 1 NC_009512.1 PFAM: ribosomal protein L31; 50S ribosomal protein L31 5581059 5191893 Pput_4960 Pseudomonas putida F1 50S ribosomal protein L31 YP_001270264.1 5580757 R 351746 CDS YP_001270265.1 148550163 5191894 5581140..5583359 1 NC_009512.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5583359 5191894 Pput_4961 Pseudomonas putida F1 primosome assembly protein PriA YP_001270265.1 5581140 D 351746 CDS YP_001270266.1 148550164 5190244 5583547..5585283 1 NC_009512.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5585283 argS 5190244 argS Pseudomonas putida F1 arginyl-tRNA synthetase YP_001270266.1 5583547 D 351746 CDS YP_001270267.1 148550165 5190245 5585285..5585983 1 NC_009512.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 5585983 5190245 Pput_4963 Pseudomonas putida F1 sporulation domain-containing protein YP_001270267.1 5585285 D 351746 CDS YP_001270268.1 148550166 5194558 complement(5586075..5586494) 1 NC_009512.1 PFAM: TM2 domain containing protein+B7201; TM2 domain-containing protein 5586494 5194558 Pput_4964 Pseudomonas putida F1 TM2 domain-containing protein YP_001270268.1 5586075 R 351746 CDS YP_001270269.1 148550167 5194559 5586661..5587287 1 NC_009512.1 PFAM: NLP/P60 protein; NLP/P60 protein 5587287 5194559 Pput_4965 Pseudomonas putida F1 NLP/P60 protein YP_001270269.1 5586661 D 351746 CDS YP_001270270.1 148550168 5193218 complement(5587416..5588414) 1 NC_009512.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 5588414 5193218 Pput_4966 Pseudomonas putida F1 twitching motility protein YP_001270270.1 5587416 R 351746 CDS YP_001270271.1 148550169 5193219 5588480..5589166 1 NC_009512.1 PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 5589166 5193219 Pput_4967 Pseudomonas putida F1 alanine racemase domain-containing protein YP_001270271.1 5588480 D 351746 CDS YP_001270272.1 148550170 5192700 5589205..5590023 1 NC_009512.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5590023 5192700 Pput_4968 Pseudomonas putida F1 pyrroline-5-carboxylate reductase YP_001270272.1 5589205 D 351746 CDS YP_001270273.1 148550171 5192701 5590034..5590624 1 NC_009512.1 PFAM: protein of unknown function YGGT; hypothetical protein 5590624 5192701 Pput_4969 Pseudomonas putida F1 hypothetical protein YP_001270273.1 5590034 D 351746 CDS YP_001270274.1 148550172 5191187 5590724..5591863 1 NC_009512.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5591863 metX 5191187 metX Pseudomonas putida F1 homoserine O-acetyltransferase YP_001270274.1 5590724 D 351746 CDS YP_001270275.1 148550173 5191188 5591871..5592491 1 NC_009512.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; methionine biosynthesis protein MetW 5592491 5191188 Pput_4971 Pseudomonas putida F1 methionine biosynthesis protein MetW YP_001270275.1 5591871 D 351746 CDS YP_001270276.1 148550174 5194868 5592514..5592948 1 NC_009512.1 hypothetical protein 5592948 5194868 Pput_4972 Pseudomonas putida F1 hypothetical protein YP_001270276.1 5592514 D 351746 CDS YP_001270277.1 148550175 5194869 5592945..5593541 1 NC_009512.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 5593541 5194869 Pput_4973 Pseudomonas putida F1 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001270277.1 5592945 D 351746 CDS YP_001270278.1 148550176 5190252 5593538..5594713 1 NC_009512.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5594713 5190252 Pput_4974 Pseudomonas putida F1 coproporphyrinogen III oxidase YP_001270278.1 5593538 D 351746 CDS YP_001270279.1 148550177 5190253 5594723..5595049 1 NC_009512.1 hypothetical protein 5595049 5190253 Pput_4975 Pseudomonas putida F1 hypothetical protein YP_001270279.1 5594723 D 351746 CDS YP_001270280.1 148550178 5193705 complement(5595258..5595980) 1 NC_009512.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 5595980 trmB 5193705 trmB Pseudomonas putida F1 tRNA (guanine-N(7)-)-methyltransferase YP_001270280.1 5595258 R 351746 CDS YP_001270281.1 148550179 5193706 complement(5595990..5596802) 1 NC_009512.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 5596802 thiG 5193706 thiG Pseudomonas putida F1 thiazole synthase YP_001270281.1 5595990 R 351746 CDS YP_001270282.1 148550180 5191558 complement(5596857..5597057) 1 NC_009512.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 5597057 5191558 Pput_4978 Pseudomonas putida F1 sulfur carrier protein ThiS YP_001270282.1 5596857 R 351746 CDS YP_001270283.1 148550181 5191559 complement(5597160..5597531) 1 NC_009512.1 PFAM: protein of unknown function DUF423; hypothetical protein 5597531 5191559 Pput_4979 Pseudomonas putida F1 hypothetical protein YP_001270283.1 5597160 R 351746 CDS YP_001270284.1 148550182 5194133 5597596..5598306 1 NC_009512.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5598306 mtgA 5194133 mtgA Pseudomonas putida F1 monofunctional biosynthetic peptidoglycan transglycosylase YP_001270284.1 5597596 D 351746 CDS YP_001270285.1 148550183 5194134 complement(5598557..5599411) 1 NC_009512.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 5599411 5194134 Pput_4981 Pseudomonas putida F1 RNA polymerase factor sigma-32 YP_001270285.1 5598557 R 351746 CDS YP_001270286.1 148550184 5191227 complement(5599523..5600548) 1 NC_009512.1 PFAM: protein of unknown function DUF214; hypothetical protein 5600548 5191227 Pput_4982 Pseudomonas putida F1 hypothetical protein YP_001270286.1 5599523 R 351746 CDS YP_001270287.1 148550185 5191228 complement(5600545..5601216) 1 NC_009512.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 5601216 5191228 Pput_4983 Pseudomonas putida F1 cell division ATP-binding protein FtsE YP_001270287.1 5600545 R 351746 CDS YP_001270288.1 148550186 5191286 complement(5601219..5602712) 1 NC_009512.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 5602712 5191286 Pput_4984 Pseudomonas putida F1 signal recognition particle-docking protein FtsY YP_001270288.1 5601219 R 351746 CDS YP_001270289.1 148550187 5191287 5602944..5604299 1 NC_009512.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5604299 5191287 Pput_4985 Pseudomonas putida F1 peptidase M16 domain-containing protein YP_001270289.1 5602944 D 351746 CDS YP_001270290.1 148550188 5190806 5604292..5605782 1 NC_009512.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5605782 5190806 Pput_4986 Pseudomonas putida F1 peptidase M16 domain-containing protein YP_001270290.1 5604292 D 351746 CDS YP_001270291.1 148550189 5190807 5605782..5606384 1 NC_009512.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; putative methyltransferase 5606384 5190807 Pput_4987 Pseudomonas putida F1 putative methyltransferase YP_001270291.1 5605782 D 351746 CDS YP_001270292.1 148550190 5191086 5606475..5607776 1 NC_009512.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5607776 5191086 Pput_4988 Pseudomonas putida F1 peptidase M16 domain-containing protein YP_001270292.1 5606475 D 351746 CDS YP_001270293.1 148550191 5191087 5607769..5609139 1 NC_009512.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5609139 5191087 Pput_4989 Pseudomonas putida F1 peptidase M16 domain-containing protein YP_001270293.1 5607769 D 351746 CDS YP_001270294.1 148550192 5192693 5609200..5610192 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 5610192 5192693 Pput_4990 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001270294.1 5609200 D 351746 CDS YP_001270295.1 148550193 5192694 complement(5610424..5611374) 1 NC_009512.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 5611374 5192694 Pput_4991 Pseudomonas putida F1 transposase, IS111A/IS1328/IS1533 YP_001270295.1 5610424 R 351746 CDS YP_001270296.1 148550194 5191835 complement(5611669..5612523) 1 NC_009512.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 5612523 5191835 Pput_4992 Pseudomonas putida F1 rhodanese domain-containing protein YP_001270296.1 5611669 R 351746 CDS YP_001270297.1 148550195 5191836 complement(5612559..5613224) 1 NC_009512.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 5613224 5191836 Pput_4993 Pseudomonas putida F1 TetR family transcriptional regulator YP_001270297.1 5612559 R 351746 CDS YP_001270298.1 148550196 5194271 5613376..5614800 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 5614800 5194271 Pput_4994 Pseudomonas putida F1 aldehyde dehydrogenase YP_001270298.1 5613376 D 351746 CDS YP_001270299.1 148550197 5194272 5614811..5615296 1 NC_009512.1 hypothetical protein 5615296 5194272 Pput_4995 Pseudomonas putida F1 hypothetical protein YP_001270299.1 5614811 D 351746 CDS YP_001270300.1 148550198 5192493 5615317..5616915 1 NC_009512.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 5616915 5192493 Pput_4996 Pseudomonas putida F1 glucose-methanol-choline oxidoreductase YP_001270300.1 5615317 D 351746 CDS YP_001270301.1 148550199 5192494 5617028..5617507 1 NC_009512.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5617507 coaD 5192494 coaD Pseudomonas putida F1 phosphopantetheine adenylyltransferase YP_001270301.1 5617028 D 351746 CDS YP_001270302.1 148550200 5192588 5617615..5617866 1 NC_009512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 5617866 5192588 Pput_4998 Pseudomonas putida F1 4Fe-4S ferredoxin YP_001270302.1 5617615 D 351746 CDS YP_001270303.1 148550201 5192589 complement(5618027..5618839) 1 NC_009512.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 5618839 5192589 Pput_4999 Pseudomonas putida F1 formamidopyrimidine-DNA glycosylase YP_001270303.1 5618027 R 351746 CDS YP_001270304.1 148550202 5195439 complement(5618843..5619715) 1 NC_009512.1 PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein 5619715 5195439 Pput_5000 Pseudomonas putida F1 putative signal transduction protein YP_001270304.1 5618843 R 351746 CDS YP_001270305.1 148550203 5195440 5619837..5621033 1 NC_009512.1 PFAM: conserved hypothetical protein 95; hypothetical protein 5621033 5195440 Pput_5001 Pseudomonas putida F1 hypothetical protein YP_001270305.1 5619837 D 351746 CDS YP_001270306.1 148550204 5195013 5621304..5623145 1 NC_009512.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5623145 5195013 Pput_5002 Pseudomonas putida F1 dihydroxy-acid dehydratase YP_001270306.1 5621304 D 351746 CDS YP_001270307.1 148550205 5195014 complement(5623261..5624316) 1 NC_009512.1 hypothetical protein 5624316 5195014 Pput_5003 Pseudomonas putida F1 hypothetical protein YP_001270307.1 5623261 R 351746 CDS YP_001270308.1 148550206 5191761 5624561..5625952 1 NC_009512.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 5625952 5191761 Pput_5004 Pseudomonas putida F1 sodium:dicarboxylate symporter YP_001270308.1 5624561 D 351746 CDS YP_001270309.1 148550207 5191762 complement(5626228..5626743) 1 NC_009512.1 PFAM: dihydrofolate reductase region; dihydrofolate reductase 5626743 5191762 Pput_5005 Pseudomonas putida F1 dihydrofolate reductase YP_001270309.1 5626228 R 351746 CDS YP_001270310.1 148550208 5192772 5626798..5628189 1 NC_009512.1 hypothetical protein 5628189 5192772 Pput_5006 Pseudomonas putida F1 hypothetical protein YP_001270310.1 5626798 D 351746 CDS YP_001270311.1 148550209 5192773 5628182..5629546 1 NC_009512.1 PFAM: GTP-binding protein, HSR1-related; HSR1-related GTP-binding protein 5629546 5192773 Pput_5007 Pseudomonas putida F1 HSR1-related GTP-binding protein YP_001270311.1 5628182 D 351746 CDS YP_001270312.1 148550210 5190322 complement(5629821..5630846) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5630846 5190322 Pput_5008 Pseudomonas putida F1 extracellular solute-binding protein YP_001270312.1 5629821 R 351746 CDS YP_001270313.1 148550211 5190323 complement(5630865..5632589) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5632589 5190323 Pput_5009 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001270313.1 5630865 R 351746 CDS YP_001270314.1 148550212 5192363 complement(5632591..5633649) 1 NC_009512.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 5633649 5192363 Pput_5010 Pseudomonas putida F1 ABC transporter-like protein YP_001270314.1 5632591 R 351746 CDS YP_001270315.1 148550213 5192364 complement(5633881..5634750) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5634750 5192364 Pput_5011 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270315.1 5633881 R 351746 CDS YP_001270316.1 148550214 5192919 complement(5634760..5637012) 1 NC_009512.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 5637012 5192919 Pput_5012 Pseudomonas putida F1 heavy metal translocating P-type ATPase YP_001270316.1 5634760 R 351746 CDS YP_001270317.1 148550215 5192920 5637096..5637539 1 NC_009512.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 5637539 5192920 Pput_5013 Pseudomonas putida F1 MerR family transcriptional regulator YP_001270317.1 5637096 D 351746 CDS YP_001270318.1 148550216 5195007 complement(5637658..5637999) 1 NC_009512.1 thymidylate synthase-like protein 5637999 5195007 Pput_5014 Pseudomonas putida F1 thymidylate synthase-like protein YP_001270318.1 5637658 R 351746 CDS YP_001270319.1 148550217 5195008 5638286..5642776 1 NC_009512.1 SMART: AAA ATPase; ATPase AAA 5642776 5195008 Pput_5015 Pseudomonas putida F1 ATPase AAA YP_001270319.1 5638286 D 351746 CDS YP_001270320.1 148550218 5191156 5642897..5644459 1 NC_009512.1 hypothetical protein 5644459 5191156 Pput_5016 Pseudomonas putida F1 hypothetical protein YP_001270320.1 5642897 D 351746 CDS YP_001270321.1 148550219 5191157 5645216..5646046 1 NC_009512.1 hypothetical protein 5646046 5191157 Pput_5017 Pseudomonas putida F1 hypothetical protein YP_001270321.1 5645216 D 351746 CDS YP_001270322.1 148550220 5190651 complement(5646528..5646737) 1 NC_009512.1 hypothetical protein 5646737 5190651 Pput_5018 Pseudomonas putida F1 hypothetical protein YP_001270322.1 5646528 R 351746 CDS YP_001270323.1 148550221 5190652 complement(5646734..5647123) 1 NC_009512.1 hypothetical protein 5647123 5190652 Pput_5019 Pseudomonas putida F1 hypothetical protein YP_001270323.1 5646734 R 351746 CDS YP_001270324.1 148550222 5194297 5647534..5647977 1 NC_009512.1 hypothetical protein 5647977 5194297 Pput_5020 Pseudomonas putida F1 hypothetical protein YP_001270324.1 5647534 D 351746 CDS YP_001270325.1 148550223 5194298 complement(5648212..5648856) 1 NC_009512.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 5648856 5194298 Pput_5021 Pseudomonas putida F1 3-isopropylmalate dehydratase small subunit YP_001270325.1 5648212 R 351746 CDS YP_001270326.1 148550224 5191191 complement(5648863..5650266) 1 NC_009512.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 5650266 5191191 Pput_5022 Pseudomonas putida F1 3-isopropylmalate dehydratase large subunit YP_001270326.1 5648863 R 351746 CDS YP_001270327.1 148550225 5191192 complement(5650548..5651879) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 5651879 5191192 Pput_5023 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270327.1 5650548 R 351746 CDS YP_001270328.1 148550226 5193090 complement(5651965..5652900) 1 NC_009512.1 PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase 5652900 5193090 Pput_5024 Pseudomonas putida F1 pyruvate carboxyltransferase YP_001270328.1 5651965 R 351746 CDS YP_001270329.1 148550227 5193091 complement(5652897..5654087) 1 NC_009512.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 5654087 5193091 Pput_5025 Pseudomonas putida F1 L-carnitine dehydratase/bile acid-inducible protein F YP_001270329.1 5652897 R 351746 CDS YP_001270330.1 148550228 5191152 complement(5654195..5655103) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5655103 5191152 Pput_5026 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270330.1 5654195 R 351746 CDS YP_001270331.1 148550229 5191153 complement(5655278..5655487) 1 NC_009512.1 hypothetical protein 5655487 5191153 Pput_5027 Pseudomonas putida F1 hypothetical protein YP_001270331.1 5655278 R 351746 CDS YP_001270332.1 148550230 5190541 complement(5655509..5655901) 1 NC_009512.1 hypothetical protein 5655901 5190541 Pput_5028 Pseudomonas putida F1 hypothetical protein YP_001270332.1 5655509 R 351746 CDS YP_001270333.1 148550231 5190542 complement(5655965..5657032) 1 NC_009512.1 hypothetical protein 5657032 5190542 Pput_5029 Pseudomonas putida F1 hypothetical protein YP_001270333.1 5655965 R 351746 CDS YP_001270334.1 148550232 5192253 complement(5657225..5658505) 1 NC_009512.1 PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 5658505 5192253 Pput_5030 Pseudomonas putida F1 DNA-directed DNA polymerase YP_001270334.1 5657225 R 351746 CDS YP_001270335.1 148550233 5192254 complement(5658492..5658920) 1 NC_009512.1 PFAM: peptidase S24, S26A and S26B; putative prophage repressor 5658920 5192254 Pput_5031 Pseudomonas putida F1 putative prophage repressor YP_001270335.1 5658492 R 351746 CDS YP_001270336.1 148550234 5192341 5659199..5660776 1 NC_009512.1 hypothetical protein 5660776 5192341 Pput_5032 Pseudomonas putida F1 hypothetical protein YP_001270336.1 5659199 D 351746 CDS YP_001270337.1 148550235 5191336 5661301..5663019 1 NC_009512.1 hypothetical protein 5663019 5191336 Pput_5034 Pseudomonas putida F1 hypothetical protein YP_001270337.1 5661301 D 351746 CDS YP_001270338.1 148550236 5191956 complement(5663077..5663838) 1 NC_009512.1 hypothetical protein 5663838 5191956 Pput_5035 Pseudomonas putida F1 hypothetical protein YP_001270338.1 5663077 R 351746 CDS YP_001270339.1 148550237 5191337 complement(5664693..5665058) 1 NC_009512.1 hypothetical protein 5665058 5191337 Pput_5037 Pseudomonas putida F1 hypothetical protein YP_001270339.1 5664693 R 351746 CDS YP_001270340.1 148550238 5195457 complement(5665399..5666025) 1 NC_009512.1 hypothetical protein 5666025 5195457 Pput_5038 Pseudomonas putida F1 hypothetical protein YP_001270340.1 5665399 R 351746 CDS YP_001270341.1 148550239 5195458 complement(5666047..5666430) 1 NC_009512.1 hypothetical protein 5666430 5195458 Pput_5039 Pseudomonas putida F1 hypothetical protein YP_001270341.1 5666047 R 351746 CDS YP_001270342.1 148550240 5193940 complement(5666433..5666912) 1 NC_009512.1 hypothetical protein 5666912 5193940 Pput_5040 Pseudomonas putida F1 hypothetical protein YP_001270342.1 5666433 R 351746 CDS YP_001270343.1 148550241 5193941 complement(5666943..5667458) 1 NC_009512.1 hypothetical protein 5667458 5193941 Pput_5041 Pseudomonas putida F1 hypothetical protein YP_001270343.1 5666943 R 351746 CDS YP_001270344.1 148550242 5192445 complement(5668006..5668254) 1 NC_009512.1 hypothetical protein 5668254 5192445 Pput_5042 Pseudomonas putida F1 hypothetical protein YP_001270344.1 5668006 R 351746 CDS YP_001270345.1 148550243 5192446 complement(5668350..5669183) 1 NC_009512.1 PFAM: thymidylate synthase; thymidylate synthase 5669183 5192446 Pput_5043 Pseudomonas putida F1 thymidylate synthase YP_001270345.1 5668350 R 351746 CDS YP_001270346.1 148550244 5192798 complement(5669180..5669692) 1 NC_009512.1 hypothetical protein 5669692 5192798 Pput_5044 Pseudomonas putida F1 hypothetical protein YP_001270346.1 5669180 R 351746 CDS YP_001270347.1 148550245 5192799 complement(5669692..5671776) 1 NC_009512.1 hypothetical protein 5671776 5192799 Pput_5045 Pseudomonas putida F1 hypothetical protein YP_001270347.1 5669692 R 351746 CDS YP_001270348.1 148550246 5192249 complement(5671779..5674157) 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 5674157 5192249 Pput_5046 Pseudomonas putida F1 phage integrase family protein YP_001270348.1 5671779 R 351746 CDS YP_001270349.1 148550247 5192250 complement(5674154..5675383) 1 NC_009512.1 PFAM: phage integrase family protein; phage integrase family protein 5675383 5192250 Pput_5047 Pseudomonas putida F1 phage integrase family protein YP_001270349.1 5674154 R 351746 CDS YP_001270350.1 148550248 5193356 complement(5675472..5676176) 1 NC_009512.1 PFAM: thymidylate synthase; thymidylate synthase 5676176 5193356 Pput_5048 Pseudomonas putida F1 thymidylate synthase YP_001270350.1 5675472 R 351746 CDS YP_001270351.1 148550249 5193357 complement(5676228..5677034) 1 NC_009512.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 5677034 5193357 Pput_5049 Pseudomonas putida F1 prolipoprotein diacylglyceryl transferase YP_001270351.1 5676228 R 351746 CDS YP_001270352.1 148550250 5190637 complement(5677051..5677833) 1 NC_009512.1 PFAM: protein of unknown function DUF81; hypothetical protein 5677833 5190637 Pput_5050 Pseudomonas putida F1 hypothetical protein YP_001270352.1 5677051 R 351746 CDS YP_001270353.1 148550251 5190638 5677964..5678710 1 NC_009512.1 PFAM: protein of unknown function DUF833; hypothetical protein 5678710 5190638 Pput_5051 Pseudomonas putida F1 hypothetical protein YP_001270353.1 5677964 D 351746 CDS YP_001270354.1 148550252 5192522 complement(5678998..5681277) 1 NC_009512.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase PtsP 5681277 5192522 Pput_5052 Pseudomonas putida F1 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001270354.1 5678998 R 351746 CDS YP_001270355.1 148550253 5192523 complement(5681300..5681779) 1 NC_009512.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 5681779 5192523 Pput_5053 Pseudomonas putida F1 dinucleoside polyphosphate hydrolase YP_001270355.1 5681300 R 351746 CDS YP_001270356.1 148550254 5190925 5681921..5682577 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 5682577 5190925 Pput_5054 Pseudomonas putida F1 HAD family hydrolase YP_001270356.1 5681921 D 351746 CDS YP_001270357.1 148550255 5190926 complement(5682707..5683132) 1 NC_009512.1 hypothetical protein 5683132 5190926 Pput_5055 Pseudomonas putida F1 hypothetical protein YP_001270357.1 5682707 R 351746 CDS YP_001270358.1 148550256 5193484 complement(5683202..5684716) 1 NC_009512.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 5684716 5193484 Pput_5056 Pseudomonas putida F1 threonine dehydratase YP_001270358.1 5683202 R 351746 CDS YP_001270359.1 148550257 5193485 5684850..5685524 1 NC_009512.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5685524 5193485 Pput_5057 Pseudomonas putida F1 ribose-5-phosphate isomerase A YP_001270359.1 5684850 D 351746 CDS YP_001270360.1 148550258 5190998 complement(5685629..5686531) 1 NC_009512.1 PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein 5686531 5190998 Pput_5058 Pseudomonas putida F1 SdiA-regulated domain-containing protein YP_001270360.1 5685629 R 351746 CDS YP_001270361.1 148550259 5190999 complement(5686622..5687542) 1 NC_009512.1 PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein 5687542 5190999 Pput_5059 Pseudomonas putida F1 SdiA-regulated domain-containing protein YP_001270361.1 5686622 R 351746 CDS YP_001270362.1 148550260 5190780 complement(5687745..5688410) 1 NC_009512.1 PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 5688410 5190780 Pput_5060 Pseudomonas putida F1 fumarylacetoacetate (FAA) hydrolase YP_001270362.1 5687745 R 351746 CDS YP_001270363.1 148550261 5190781 complement(5688437..5689858) 1 NC_009512.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 5689858 5190781 Pput_5061 Pseudomonas putida F1 FAD linked oxidase domain-containing protein YP_001270363.1 5688437 R 351746 CDS YP_001270364.1 148550262 5192574 5690006..5691235 1 NC_009512.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5691235 5192574 Pput_5062 Pseudomonas putida F1 D-3-phosphoglycerate dehydrogenase YP_001270364.1 5690006 D 351746 CDS YP_001270365.1 148550263 5192575 complement(5691283..5691759) 1 NC_009512.1 hypothetical protein 5691759 5192575 Pput_5063 Pseudomonas putida F1 hypothetical protein YP_001270365.1 5691283 R 351746 CDS YP_001270366.1 148550264 5194799 5691983..5692471 1 NC_009512.1 hypothetical protein 5692471 5194799 Pput_5064 Pseudomonas putida F1 hypothetical protein YP_001270366.1 5691983 D 351746 CDS YP_001270367.1 148550265 5194800 complement(5692662..5693165) 1 NC_009512.1 PFAM: protein of unknown function DUF523; hypothetical protein 5693165 5194800 Pput_5065 Pseudomonas putida F1 hypothetical protein YP_001270367.1 5692662 R 351746 CDS YP_001270368.1 148550266 5194207 complement(5693152..5693787) 1 NC_009512.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase 5693787 5194207 Pput_5066 Pseudomonas putida F1 2OG-Fe(II) oxygenase YP_001270368.1 5693152 R 351746 CDS YP_001270369.1 148550267 5194208 5693898..5694650 1 NC_009512.1 hypothetical protein 5694650 5194208 Pput_5067 Pseudomonas putida F1 hypothetical protein YP_001270369.1 5693898 D 351746 CDS YP_001270370.1 148550268 5192219 complement(5694651..5695637) 1 NC_009512.1 lysophospholipase-like protein 5695637 5192219 Pput_5068 Pseudomonas putida F1 lysophospholipase-like protein YP_001270370.1 5694651 R 351746 CDS YP_001270371.1 148550269 5192220 5695859..5696428 1 NC_009512.1 hypothetical protein 5696428 5192220 Pput_5069 Pseudomonas putida F1 hypothetical protein YP_001270371.1 5695859 D 351746 CDS YP_001270372.1 148550270 5193274 complement(5696407..5696973) 1 NC_009512.1 PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 5696973 5193274 Pput_5070 Pseudomonas putida F1 hexapaptide repeat-containing transferase YP_001270372.1 5696407 R 351746 CDS YP_001270373.1 148550271 5193275 5697060..5699426 1 NC_009512.1 PFAM: peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 5699426 5193275 Pput_5071 Pseudomonas putida F1 peptidase S45, penicillin amidase YP_001270373.1 5697060 D 351746 CDS YP_001270374.1 148550272 5191448 complement(5699634..5700569) 1 NC_009512.1 PFAM: NLPA lipoprotein; NLPA lipoprotein 5700569 5191448 Pput_5072 Pseudomonas putida F1 NLPA lipoprotein YP_001270374.1 5699634 R 351746 CDS YP_001270375.1 148550273 5191449 complement(5700595..5701425) 1 NC_009512.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 5701425 5191449 Pput_5073 Pseudomonas putida F1 sigma-54 factor interaction domain-containing protein YP_001270375.1 5700595 R 351746 CDS YP_001270376.1 148550274 5191763 complement(5701490..5702071) 1 NC_009512.1 PFAM: protein of unknown function DUF1234; hypothetical protein 5702071 5191763 Pput_5074 Pseudomonas putida F1 hypothetical protein YP_001270376.1 5701490 R 351746 CDS YP_001270377.1 148550275 5191764 complement(5702282..5703271) 1 NC_009512.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 5703271 5191764 Pput_5075 Pseudomonas putida F1 sulfate ABC transporter ATPase YP_001270377.1 5702282 R 351746 CDS YP_001270378.1 148550276 5194684 complement(5703275..5704147) 1 NC_009512.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 5704147 5194684 Pput_5076 Pseudomonas putida F1 sulfate ABC transporter permease YP_001270378.1 5703275 R 351746 CDS YP_001270379.1 148550277 5194685 complement(5704159..5704977) 1 NC_009512.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 5704977 5194685 Pput_5077 Pseudomonas putida F1 sulfate ABC transporter permease YP_001270379.1 5704159 R 351746 CDS YP_001270380.1 148550278 5193130 complement(5705163..5706170) 1 NC_009512.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein 5706170 5193130 Pput_5078 Pseudomonas putida F1 sulfate ABC transporter substrate-binding protein YP_001270380.1 5705163 R 351746 CDS YP_001270381.1 148550279 5193131 complement(5706221..5706403) 1 NC_009512.1 hypothetical protein 5706403 5193131 Pput_5079 Pseudomonas putida F1 hypothetical protein YP_001270381.1 5706221 R 351746 CDS YP_001270382.1 148550280 5192277 complement(5706637..5709690) 1 NC_009512.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 5709690 5192277 Pput_5080 Pseudomonas putida F1 acriflavin resistance protein YP_001270382.1 5706637 R 351746 CDS YP_001270383.1 148550281 5192278 complement(5709687..5710754) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 5710754 5192278 Pput_5081 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001270383.1 5709687 R 351746 CDS YP_001270384.1 148550282 5190816 complement(5710751..5711839) 1 NC_009512.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 5711839 5190816 Pput_5082 Pseudomonas putida F1 RND family efflux transporter MFP subunit YP_001270384.1 5710751 R 351746 CDS YP_001270385.1 148550283 5190817 5712093..5712548 1 NC_009512.1 PFAM: protein of unknown function DUF1568; hypothetical protein 5712548 5190817 Pput_5083 Pseudomonas putida F1 hypothetical protein YP_001270385.1 5712093 D 351746 CDS YP_001270386.1 148550284 5190994 complement(5712655..5713548) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 5713548 5190994 Pput_5084 Pseudomonas putida F1 ornithine carbamoyltransferase YP_001270386.1 5712655 R 351746 CDS YP_001270387.1 148550285 5190995 complement(5713545..5714465) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5714465 5190995 Pput_5085 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001270387.1 5713545 R 351746 CDS YP_001270388.1 148550286 5190669 complement(5714462..5715604) 1 NC_009512.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 5715604 5190669 Pput_5086 Pseudomonas putida F1 spermidine/putrescine ABC transporter ATPase YP_001270388.1 5714462 R 351746 CDS YP_001270389.1 148550287 5190670 complement(5715675..5716769) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5716769 5190670 Pput_5087 Pseudomonas putida F1 extracellular solute-binding protein YP_001270389.1 5715675 R 351746 CDS YP_001270390.1 148550288 5190643 complement(5716926..5718023) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5718023 5190643 Pput_5088 Pseudomonas putida F1 extracellular solute-binding protein YP_001270390.1 5716926 R 351746 CDS YP_001270391.1 148550289 5190644 complement(5718192..5719553) 1 NC_009512.1 PFAM: aminotransferase class-III; putative aminotransferase 5719553 5190644 Pput_5089 Pseudomonas putida F1 putative aminotransferase YP_001270391.1 5718192 R 351746 CDS YP_001270392.1 148550290 5190828 complement(5719602..5720960) 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 5720960 5190828 Pput_5090 Pseudomonas putida F1 glutamate--putrescine ligase YP_001270392.1 5719602 R 351746 CDS YP_001270393.1 148550291 5190829 5721535..5722911 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 5722911 5190829 Pput_5091 Pseudomonas putida F1 glutamate--putrescine ligase YP_001270393.1 5721535 D 351746 CDS YP_001270394.1 148550292 5194562 complement(5723057..5724355) 1 NC_009512.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 5724355 5194562 Pput_5092 Pseudomonas putida F1 N-acetylglutamate synthase YP_001270394.1 5723057 R 351746 CDS YP_001270395.1 148550293 5194563 complement(5724480..5725622) 1 NC_009512.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 5725622 5194563 Pput_5093 Pseudomonas putida F1 acetylornithine deacetylase YP_001270395.1 5724480 R 351746 CDS YP_001270396.1 148550294 5192988 5725740..5727107 1 NC_009512.1 PFAM: adenylate cyclase; adenylate cyclase 5727107 5192988 Pput_5094 Pseudomonas putida F1 adenylate cyclase YP_001270396.1 5725740 D 351746 CDS YP_001270397.1 148550295 5192989 complement(5727204..5727674) 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 5727674 5192989 Pput_5095 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001270397.1 5727204 R 351746 CDS YP_001270398.1 148550296 5190615 5727801..5728106 1 NC_009512.1 hypothetical protein 5728106 5190615 Pput_5096 Pseudomonas putida F1 hypothetical protein YP_001270398.1 5727801 D 351746 CDS YP_001270399.1 148550297 5190616 5728291..5729964 1 NC_009512.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; type II secretion system protein E 5729964 5190616 Pput_5097 Pseudomonas putida F1 type II secretion system protein E YP_001270399.1 5728291 D 351746 CDS YP_001270400.1 148550298 5191402 5730053..5730367 1 NC_009512.1 TIGRFAM: conserverd hypothetical protein; hypothetical protein 5730367 5191402 Pput_5098 Pseudomonas putida F1 hypothetical protein YP_001270400.1 5730053 D 351746 CDS YP_001270401.1 148550299 5191403 complement(5730433..5733306) 1 NC_009512.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 5733306 5191403 Pput_5099 Pseudomonas putida F1 glycine dehydrogenase YP_001270401.1 5730433 R 351746 CDS YP_001270402.1 148550300 5195495 complement(5733503..5733886) 1 NC_009512.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 5733886 5195495 Pput_5100 Pseudomonas putida F1 glycine cleavage system protein H YP_001270402.1 5733503 R 351746 CDS YP_001270403.1 148550301 5195496 complement(5733938..5735020) 1 NC_009512.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 5735020 gcvT 5195496 gcvT Pseudomonas putida F1 glycine cleavage system aminomethyltransferase T YP_001270403.1 5733938 R 351746 CDS YP_001270404.1 148550302 5193313 complement(5735148..5736770) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5736770 5193313 Pput_5102 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001270404.1 5735148 R 351746 CDS YP_001270405.1 148550303 5193314 complement(5736923..5737924) 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5737924 5193314 Pput_5103 Pseudomonas putida F1 extracellular solute-binding protein YP_001270405.1 5736923 R 351746 CDS YP_001270406.1 148550304 5190683 complement(5738118..5739341) 1 NC_009512.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 5739341 5190683 Pput_5104 Pseudomonas putida F1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_001270406.1 5738118 R 351746 CDS YP_001270407.1 148550305 5190684 complement(5739345..5739827) 1 NC_009512.1 hypothetical protein 5739827 5190684 Pput_5105 Pseudomonas putida F1 hypothetical protein YP_001270407.1 5739345 R 351746 CDS YP_001270408.1 148550306 5191478 complement(5739824..5741023) 1 NC_009512.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 5741023 5191478 Pput_5106 Pseudomonas putida F1 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001270408.1 5739824 R 351746 CDS YP_001270409.1 148550307 5191479 complement(5741020..5742354) 1 NC_009512.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; peptidase M24 5742354 5191479 Pput_5107 Pseudomonas putida F1 peptidase M24 YP_001270409.1 5741020 R 351746 CDS YP_001270410.1 148550308 5194680 complement(5742376..5742930) 1 NC_009512.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 5742930 5194680 Pput_5108 Pseudomonas putida F1 hypothetical protein YP_001270410.1 5742376 R 351746 CDS YP_001270411.1 148550309 5194681 5743076..5743294 1 NC_009512.1 hypothetical protein 5743294 5194681 Pput_5109 Pseudomonas putida F1 hypothetical protein YP_001270411.1 5743076 D 351746 CDS YP_001270412.1 148550310 5193805 5743291..5743611 1 NC_009512.1 PFAM: protein of unknown function DUF710; hypothetical protein 5743611 5193805 Pput_5110 Pseudomonas putida F1 hypothetical protein YP_001270412.1 5743291 D 351746 CDS YP_001270413.1 148550311 5193806 5743933..5744541 1 NC_009512.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5744541 5193806 Pput_5111 Pseudomonas putida F1 5-formyltetrahydrofolate cyclo-ligase YP_001270413.1 5743933 D 351746 CDS YP_001270414.1 148550312 5191484 complement(5744561..5744713) 1 NC_009512.1 hypothetical protein 5744713 5191484 Pput_5112 Pseudomonas putida F1 hypothetical protein YP_001270414.1 5744561 R 351746 CDS YP_001270415.1 148550313 5191485 5744892..5745341 1 NC_009512.1 PFAM: protein of unknown function DUF55; hypothetical protein 5745341 5191485 Pput_5113 Pseudomonas putida F1 hypothetical protein YP_001270415.1 5744892 D 351746 CDS YP_001270416.1 148550314 5193450 5745437..5746396 1 NC_009512.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 5746396 5193450 Pput_5114 Pseudomonas putida F1 secretion protein HlyD family protein YP_001270416.1 5745437 D 351746 CDS YP_001270417.1 148550315 5193451 5746393..5749113 1 NC_009512.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter-like protein 5749113 5193451 Pput_5115 Pseudomonas putida F1 ABC transporter-like protein YP_001270417.1 5746393 D 351746 CDS YP_001270418.1 148550316 5193205 5749115..5750227 1 NC_009512.1 PFAM: ABC-2 type transporter; ABC transporter 5750227 5193205 Pput_5116 Pseudomonas putida F1 ABC transporter YP_001270418.1 5749115 D 351746 CDS YP_001270419.1 148550317 5193206 complement(5750408..5750851) 1 NC_009512.1 hypothetical protein 5750851 5193206 Pput_5117 Pseudomonas putida F1 hypothetical protein YP_001270419.1 5750408 R 351746 CDS YP_001270420.1 148550318 5190663 complement(5751006..5751452) 1 NC_009512.1 PFAM: flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 5751452 5190663 Pput_5118 Pseudomonas putida F1 flagellar basal body-associated protein FliL-like protein YP_001270420.1 5751006 R 351746 CDS YP_001270421.1 148550319 5190664 5751568..5752545 1 NC_009512.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 5752545 5190664 Pput_5119 Pseudomonas putida F1 alcohol dehydrogenase YP_001270421.1 5751568 D 351746 CDS YP_001270422.1 148550320 5193823 complement(5752711..5753361) 1 NC_009512.1 PFAM: ChaC family protein; ChaC family protein 5753361 5193823 Pput_5120 Pseudomonas putida F1 ChaC family protein YP_001270422.1 5752711 R 351746 CDS YP_001270423.1 148550321 5193824 complement(5753608..5754576) 1 NC_009512.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 5754576 5193824 Pput_5121 Pseudomonas putida F1 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_001270423.1 5753608 R 351746 CDS YP_001270424.1 148550322 5191704 complement(5754576..5756042) 1 NC_009512.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; UbiD family decarboxylase 5756042 5191704 Pput_5122 Pseudomonas putida F1 UbiD family decarboxylase YP_001270424.1 5754576 R 351746 CDS YP_001270425.1 148550323 5191705 complement(5756250..5757509) 1 NC_009512.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5757509 rho 5191705 rho Pseudomonas putida F1 transcription termination factor Rho YP_001270425.1 5756250 R 351746 CDS YP_001270426.1 148550324 5192100 complement(5757737..5758066) 1 NC_009512.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 5758066 5192100 Pput_5124 Pseudomonas putida F1 thioredoxin YP_001270426.1 5757737 R 351746 CDS YP_001270427.1 148550325 5192101 5758320..5759822 1 NC_009512.1 PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 5759822 5192101 Pput_5125 Pseudomonas putida F1 Ppx/GppA phosphatase YP_001270427.1 5758320 D 351746 CDS YP_001270428.1 148550326 5192744 complement(5759809..5762052) 1 NC_009512.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 5762052 5192744 Pput_5126 Pseudomonas putida F1 polyphosphate kinase YP_001270428.1 5759809 R 351746 CDS YP_001270429.1 148550327 5192745 5762266..5762910 1 NC_009512.1 hypothetical protein 5762910 5192745 Pput_5127 Pseudomonas putida F1 hypothetical protein YP_001270429.1 5762266 D 351746 CDS YP_001270430.1 148550328 5191972 complement(5762743..5764038) 1 NC_009512.1 sterol desaturase-like protein 5764038 5191972 Pput_5128 Pseudomonas putida F1 sterol desaturase-like protein YP_001270430.1 5762743 R 351746 CDS YP_001270431.1 148550329 5191973 5764151..5764810 1 NC_009512.1 PFAM: ThiJ/PfpI domain protein; isoprenoid biosynthesis protein with amidotransferase-like domain 5764810 5191973 Pput_5129 Pseudomonas putida F1 isoprenoid biosynthesis protein with amidotransferase-like domain YP_001270431.1 5764151 D 351746 CDS YP_001270432.1 148550330 5195551 complement(5765023..5765511) 1 NC_009512.1 PFAM: protein of unknown function DUF188; hypothetical protein 5765511 5195551 Pput_5130 Pseudomonas putida F1 hypothetical protein YP_001270432.1 5765023 R 351746 CDS YP_001270433.1 148550331 5195552 5765642..5768497 1 NC_009512.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5768497 cyaA 5195552 cyaA Pseudomonas putida F1 adenylate cyclase YP_001270433.1 5765642 D 351746 CDS YP_001270434.1 148550332 5192455 complement(5768588..5768998) 1 NC_009512.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 5768998 5192455 Pput_5132 Pseudomonas putida F1 nucleoside diphosphate kinase regulator YP_001270434.1 5768588 R 351746 CDS YP_001270435.1 148550333 5192456 complement(5769145..5769369) 1 NC_009512.1 PFAM: protein of unknown function DUF1289; hypothetical protein 5769369 5192456 Pput_5133 Pseudomonas putida F1 hypothetical protein YP_001270435.1 5769145 R 351746 CDS YP_001270436.1 148550334 5191214 complement(5769371..5769703) 1 NC_009512.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 5769703 cyaY 5191214 cyaY Pseudomonas putida F1 frataxin-like protein YP_001270436.1 5769371 R 351746 CDS YP_001270437.1 148550335 5191215 5769943..5770161 1 NC_009512.1 hypothetical protein 5770161 5191215 Pput_5135 Pseudomonas putida F1 hypothetical protein YP_001270437.1 5769943 D 351746 CDS YP_001270438.1 148550336 5193715 5770171..5771418 1 NC_009512.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 5771418 5193715 Pput_5136 Pseudomonas putida F1 diaminopimelate decarboxylase YP_001270438.1 5770171 D 351746 CDS YP_001270439.1 148550337 5193716 5771423..5772253 1 NC_009512.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5772253 dapF 5193716 dapF Pseudomonas putida F1 diaminopimelate epimerase YP_001270439.1 5771423 D 351746 CDS YP_001270440.1 148550338 5191666 5772267..5772977 1 NC_009512.1 PFAM: protein of unknown function DUF484; hypothetical protein 5772977 5191666 Pput_5138 Pseudomonas putida F1 hypothetical protein YP_001270440.1 5772267 D 351746 CDS YP_001270441.1 148550339 5191667 5772977..5773876 1 NC_009512.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5773876 xerC 5191667 xerC Pseudomonas putida F1 site-specific tyrosine recombinase XerC YP_001270441.1 5772977 D 351746 CDS YP_001270442.1 148550340 5195019 5773873..5774568 1 NC_009512.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 5774568 5195019 Pput_5140 Pseudomonas putida F1 HAD family hydrolase YP_001270442.1 5773873 D 351746 CDS YP_001270443.1 148550341 5195020 complement(5774748..5775077) 1 NC_009512.1 hypothetical protein 5775077 5195020 Pput_5141 Pseudomonas putida F1 hypothetical protein YP_001270443.1 5774748 R 351746 CDS YP_001270444.1 148550342 5195388 complement(5775507..5776838) 1 NC_009512.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 5776838 5195388 Pput_5142 Pseudomonas putida F1 ammonium transporter YP_001270444.1 5775507 R 351746 CDS YP_001270445.1 148550343 5195389 complement(5776886..5777224) 1 NC_009512.1 PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 5777224 5195389 Pput_5143 Pseudomonas putida F1 nitrogen regulatory protein P-II YP_001270445.1 5776886 R 351746 CDS YP_001270446.1 148550344 5192796 5777608..5778009 1 NC_009512.1 PFAM: protein of unknown function DUF526; hypothetical protein 5778009 5192796 Pput_5144 Pseudomonas putida F1 hypothetical protein YP_001270446.1 5777608 D 351746 CDS YP_001270447.1 148550345 5192797 5778010..5778363 1 NC_009512.1 hypothetical protein 5778363 5192797 Pput_5145 Pseudomonas putida F1 hypothetical protein YP_001270447.1 5778010 D 351746 CDS YP_001270448.1 148550346 5195433 complement(5778317..5780392) 1 NC_009512.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 5780392 5195433 Pput_5146 Pseudomonas putida F1 Sel1 domain-containing protein YP_001270448.1 5778317 R 351746 CDS YP_001270449.1 148550347 5195434 5780649..5781035 1 NC_009512.1 ATPase-like protein 5781035 5195434 Pput_5147 Pseudomonas putida F1 ATPase-like protein YP_001270449.1 5780649 D 351746 CDS YP_001270450.1 148550348 5190431 5781032..5781388 1 NC_009512.1 hypothetical protein 5781388 5190431 Pput_5148 Pseudomonas putida F1 hypothetical protein YP_001270450.1 5781032 D 351746 CDS YP_001270451.1 148550349 5190432 5782150..5783640 1 NC_009512.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 5783640 5190432 Pput_5149 Pseudomonas putida F1 Mg chelatase subunit ChlI YP_001270451.1 5782150 D 351746 CDS YP_001270452.1 148550350 5192846 complement(5783708..5784076) 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 5784076 5192846 Pput_5150 Pseudomonas putida F1 response regulator receiver protein YP_001270452.1 5783708 R 351746 CDS YP_001270453.1 148550351 5192847 complement(5784073..5785065) 1 NC_009512.1 PFAM: regulatory protein, LuxR; response regulator receiver; transcriptional regulator domain protein; Sigma-70, region 4 type 2; response regulator receiver protein 5785065 5192847 Pput_5151 Pseudomonas putida F1 response regulator receiver protein YP_001270453.1 5784073 R 351746 CDS YP_001270454.1 148550352 5193065 5785305..5790353 1 NC_009512.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: serine/threonine protein kinase; ATPase domain-containing protein 5790353 5193065 Pput_5152 Pseudomonas putida F1 ATPase domain-containing protein YP_001270454.1 5785305 D 351746 CDS YP_001270455.1 148550353 5193066 complement(5790450..5791076) 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 5791076 5193066 Pput_5153 Pseudomonas putida F1 isochorismatase hydrolase YP_001270455.1 5790450 R 351746 CDS YP_001270456.1 148550354 5190209 complement(5791150..5791512) 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 5791512 5190209 Pput_5154 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001270456.1 5791150 R 351746 CDS YP_001270457.1 148550355 5190210 5791633..5792679 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 5792679 5190210 Pput_5155 Pseudomonas putida F1 AraC family transcriptional regulator YP_001270457.1 5791633 D 351746 CDS YP_001270458.1 148550356 5190635 5792908..5794695 1 NC_009512.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; potassium efflux system protein 5794695 5190635 Pput_5156 Pseudomonas putida F1 potassium efflux system protein YP_001270458.1 5792908 D 351746 CDS YP_001270459.1 148550357 5190636 5795383..5795676 1 NC_009512.1 hypothetical protein 5795676 5190636 Pput_5157 Pseudomonas putida F1 hypothetical protein YP_001270459.1 5795383 D 351746 CDS YP_001270460.1 148550358 5192864 complement(5795853..5796482) 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 5796482 5192864 Pput_5158 Pseudomonas putida F1 isochorismatase hydrolase YP_001270460.1 5795853 R 351746 CDS YP_001270461.1 148550359 5192865 5796719..5797630 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5797630 5192865 Pput_5159 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270461.1 5796719 D 351746 CDS YP_001270462.1 148550360 5191903 5797838..5799100 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 5799100 5191903 Pput_5160 Pseudomonas putida F1 outer membrane porin YP_001270462.1 5797838 D 351746 CDS YP_001270463.1 148550361 5191904 5799102..5800700 1 NC_009512.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; hypothetical protein 5800700 5191904 Pput_5161 Pseudomonas putida F1 hypothetical protein YP_001270463.1 5799102 D 351746 CDS YP_001270464.1 148550362 5191464 complement(5800828..5802810) 1 NC_009512.1 PFAM: Amidohydrolase 3; amidohydrolase 3 5802810 5191464 Pput_5162 Pseudomonas putida F1 amidohydrolase 3 YP_001270464.1 5800828 R 351746 CDS YP_001270465.1 148550363 5191465 complement(5803010..5803828) 1 NC_009512.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 5803828 5191465 Pput_5163 Pseudomonas putida F1 alpha/beta hydrolase fold family protein YP_001270465.1 5803010 R 351746 CDS YP_001270466.1 148550364 5192683 complement(5803869..5804177) 1 NC_009512.1 hypothetical protein 5804177 5192683 Pput_5164 Pseudomonas putida F1 hypothetical protein YP_001270466.1 5803869 R 351746 CDS YP_001270467.1 148550365 5192684 complement(5804295..5804924) 1 NC_009512.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 5804924 5192684 Pput_5165 Pseudomonas putida F1 isochorismatase hydrolase YP_001270467.1 5804295 R 351746 CDS YP_001270468.1 148550366 5193228 5805246..5806673 1 NC_009512.1 PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; cyclic nucleotide-regulated small mechanosensitive ion channel 5806673 5193228 Pput_5166 Pseudomonas putida F1 cyclic nucleotide-regulated small mechanosensitive ion channel YP_001270468.1 5805246 D 351746 CDS YP_001270469.1 148550367 5193229 complement(5806782..5808218) 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 5808218 5193229 Pput_5167 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001270469.1 5806782 R 351746 CDS YP_001270470.1 148550368 5191362 complement(5808226..5809716) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 5809716 5191362 Pput_5168 Pseudomonas putida F1 aldehyde dehydrogenase YP_001270470.1 5808226 R 351746 CDS YP_001270471.1 148550369 5191363 5809852..5810742 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5810742 5191363 Pput_5169 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270471.1 5809852 D 351746 CDS YP_001270472.1 148550370 5191010 5810946..5812340 1 NC_009512.1 PFAM: protein of unknown function DUF1338; hypothetical protein 5812340 5191010 Pput_5170 Pseudomonas putida F1 hypothetical protein YP_001270472.1 5810946 D 351746 CDS YP_001270473.1 148550371 5191011 complement(5812393..5813319) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5813319 5191011 Pput_5171 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270473.1 5812393 R 351746 CDS YP_001270474.1 148550372 5193950 5813477..5814865 1 NC_009512.1 functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 5814865 5193950 Pput_5172 Pseudomonas putida F1 multidrug efflux protein NorA YP_001270474.1 5813477 D 351746 CDS YP_001270475.1 148550373 5193951 complement(5815049..5816716) 1 NC_009512.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 5816716 5193951 Pput_5173 Pseudomonas putida F1 diguanylate cyclase/phosphodiesterase YP_001270475.1 5815049 R 351746 CDS YP_001270476.1 148550374 5194098 5817014..5819023 1 NC_009512.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; ATP-dependent DNA helicase Rep 5819023 5194098 Pput_5174 Pseudomonas putida F1 ATP-dependent DNA helicase Rep YP_001270476.1 5817014 D 351746 CDS YP_001270477.1 148550375 5194099 5819088..5819660 1 NC_009512.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 5819660 5194099 Pput_5175 Pseudomonas putida F1 xanthine phosphoribosyltransferase YP_001270477.1 5819088 D 351746 CDS YP_001270478.1 148550376 5194364 complement(5819771..5821630) 1 NC_009512.1 acetyl-CoA hydrolase-like protein 5821630 5194364 Pput_5176 Pseudomonas putida F1 acetyl-CoA hydrolase-like protein YP_001270478.1 5819771 R 351746 CDS YP_001270479.1 148550377 5194365 complement(5821858..5822280) 1 NC_009512.1 cytochrome c5 5822280 5194365 Pput_5177 Pseudomonas putida F1 cytochrome c5 YP_001270479.1 5821858 R 351746 CDS YP_001270480.1 148550378 5194688 complement(5822417..5823016) 1 NC_009512.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 5823016 5194688 Pput_5178 Pseudomonas putida F1 XRE family transcriptional regulator YP_001270480.1 5822417 R 351746 CDS YP_001270481.1 148550379 5194689 complement(5823073..5824146) 1 NC_009512.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 5824146 dadX 5194689 dadX Pseudomonas putida F1 alanine racemase YP_001270481.1 5823073 R 351746 CDS YP_001270482.1 148550380 5194797 complement(5824291..5825595) 1 NC_009512.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 5825595 5194797 Pput_5180 Pseudomonas putida F1 D-amino acid dehydrogenase small subunit YP_001270482.1 5824291 R 351746 CDS YP_001270483.1 148550381 5194798 5825752..5826240 1 NC_009512.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 5826240 5194798 Pput_5181 Pseudomonas putida F1 AsnC family transcriptional regulator YP_001270483.1 5825752 D 351746 CDS YP_001270484.1 148550382 5195263 complement(5826243..5826596) 1 NC_009512.1 PFAM: protein of unknown function UPF0153; hypothetical protein 5826596 5195263 Pput_5182 Pseudomonas putida F1 hypothetical protein YP_001270484.1 5826243 R 351746 CDS YP_001270485.1 148550383 5195264 5826741..5828033 1 NC_009512.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 5828033 5195264 Pput_5183 Pseudomonas putida F1 FAD dependent oxidoreductase YP_001270485.1 5826741 D 351746 CDS YP_001270486.1 148550384 5195037 complement(5828234..5828464) 1 NC_009512.1 hypothetical protein 5828464 5195037 Pput_5184 Pseudomonas putida F1 hypothetical protein YP_001270486.1 5828234 R 351746 CDS YP_001270487.1 148550385 5195038 5828583..5830073 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 5830073 5195038 Pput_5185 Pseudomonas putida F1 GntR family transcriptional regulator YP_001270487.1 5828583 D 351746 CDS YP_001270488.1 148550386 5192568 5830134..5831687 1 NC_009512.1 PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 5831687 5192568 Pput_5186 Pseudomonas putida F1 phospholipase D/transphosphatidylase YP_001270488.1 5830134 D 351746 CDS YP_001270489.1 148550387 5192569 complement(5831724..5832863) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 5832863 5192569 Pput_5187 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270489.1 5831724 R 351746 CDS YP_001270490.1 148550388 5190262 complement(5832974..5834554) 1 NC_009512.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 5834554 5190262 Pput_5188 Pseudomonas putida F1 aldehyde dehydrogenase YP_001270490.1 5832974 R 351746 CDS YP_001270491.1 148550389 5190263 5834664..5835023 1 NC_009512.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 5835023 5190263 Pput_5189 Pseudomonas putida F1 hypothetical protein YP_001270491.1 5834664 D 351746 CDS YP_001270492.1 148550390 5192962 5835050..5835310 1 NC_009512.1 hypothetical protein 5835310 5192962 Pput_5190 Pseudomonas putida F1 hypothetical protein YP_001270492.1 5835050 D 351746 CDS YP_001270493.1 148550391 5192963 complement(5835378..5835533) 1 NC_009512.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 5835533 rpmG 5192963 rpmG Pseudomonas putida F1 50S ribosomal protein L33 YP_001270493.1 5835378 R 351746 CDS YP_001270494.1 148550392 5195567 complement(5835545..5835781) 1 NC_009512.1 required for 70S ribosome assembly; 50S ribosomal protein L28 5835781 rpmB 5195567 rpmB Pseudomonas putida F1 50S ribosomal protein L28 YP_001270494.1 5835545 R 351746 CDS YP_001270495.1 148550393 5195568 5836143..5837732 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 5837732 5195568 Pput_5193 Pseudomonas putida F1 extracellular solute-binding protein YP_001270495.1 5836143 D 351746 CDS YP_001270496.1 148550394 5194753 complement(5837867..5838574) 1 NC_009512.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 5838574 radC 5194753 radC Pseudomonas putida F1 DNA repair protein RadC YP_001270496.1 5837867 R 351746 CDS YP_001270497.1 148550395 5194754 5838608..5839885 1 NC_009512.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5839885 5194754 Pput_5195 Pseudomonas putida F1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001270497.1 5838608 D 351746 CDS YP_001270498.1 148550396 5195168 5839891..5840346 1 NC_009512.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 5840346 dut 5195168 dut Pseudomonas putida F1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001270498.1 5839891 D 351746 CDS YP_001270499.1 148550397 5195169 5840458..5841858 1 NC_009512.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase 5841858 5195169 Pput_5197 Pseudomonas putida F1 phosphomannomutase YP_001270499.1 5840458 D 351746 CDS YP_001270500.1 148550398 5192472 5841889..5842794 1 NC_009512.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 5842794 5192472 Pput_5198 Pseudomonas putida F1 acetylglutamate kinase YP_001270500.1 5841889 D 351746 CDS YP_001270501.1 148550399 5192473 complement(5842954..5843595) 1 NC_009512.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5843595 pyrE 5192473 pyrE Pseudomonas putida F1 orotate phosphoribosyltransferase YP_001270501.1 5842954 R 351746 CDS YP_001270502.1 148550400 5190778 5843676..5844455 1 NC_009512.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 5844455 5190778 Pput_5200 Pseudomonas putida F1 exodeoxyribonuclease III Xth YP_001270502.1 5843676 D 351746 CDS YP_001270503.1 148550401 5190779 complement(5844489..5844857) 1 NC_009512.1 hypothetical protein 5844857 5190779 Pput_5201 Pseudomonas putida F1 hypothetical protein YP_001270503.1 5844489 R 351746 CDS YP_001270504.1 148550402 5192830 complement(5844881..5845603) 1 NC_009512.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 5845603 rph 5192830 rph Pseudomonas putida F1 ribonuclease PH YP_001270504.1 5844881 R 351746 CDS YP_001270505.1 148550403 5192831 5845832..5846695 1 NC_009512.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; hypothetical protein 5846695 5192831 Pput_5203 Pseudomonas putida F1 hypothetical protein YP_001270505.1 5845832 D 351746 CDS YP_001270506.1 148550404 5192970 5846709..5847329 1 NC_009512.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 5847329 gmk 5192970 gmk Pseudomonas putida F1 guanylate kinase YP_001270506.1 5846709 D 351746 CDS YP_001270508.1 148550406 5193494 complement(5847858..5849465) 1 NC_009512.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 5849465 5193494 Pput_5206 Pseudomonas putida F1 amino acid permease-associated protein YP_001270508.1 5847858 R 351746 CDS YP_001270509.1 148550407 5193495 complement(5849519..5850286) 1 NC_009512.1 PFAM: peptidase C26; peptidase C26 5850286 5193495 Pput_5207 Pseudomonas putida F1 peptidase C26 YP_001270509.1 5849519 R 351746 CDS YP_001270510.1 148550408 5195561 complement(5850291..5851673) 1 NC_009512.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 5851673 5195561 Pput_5208 Pseudomonas putida F1 glutamate--putrescine ligase YP_001270510.1 5850291 R 351746 CDS YP_001270511.1 148550409 5195562 5851702..5852751 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5852751 5195562 Pput_5209 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270511.1 5851702 D 351746 CDS YP_001270512.1 148550410 5193910 5852992..5853255 1 NC_009512.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 5853255 rpoZ 5193910 rpoZ Pseudomonas putida F1 DNA-directed RNA polymerase subunit omega YP_001270512.1 5852992 D 351746 CDS YP_001270513.1 148550411 5193911 5853315..5855423 1 NC_009512.1 TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 5855423 5193911 Pput_5211 Pseudomonas putida F1 (p)ppGpp synthetase I SpoT/RelA YP_001270513.1 5853315 D 351746 CDS YP_001270514.1 148550412 5193679 5855447..5855827 1 NC_009512.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; putative endoribonuclease L-PSP 5855827 5193679 Pput_5212 Pseudomonas putida F1 putative endoribonuclease L-PSP YP_001270514.1 5855447 D 351746 CDS YP_001270515.1 148550413 5193680 5855884..5856615 1 NC_009512.1 hypothetical protein 5856615 5193680 Pput_5213 Pseudomonas putida F1 hypothetical protein YP_001270515.1 5855884 D 351746 CDS YP_001270516.1 148550414 5190982 complement(5856785..5857642) 1 NC_009512.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 5857642 5190982 Pput_5214 Pseudomonas putida F1 NAD-dependent epimerase/dehydratase YP_001270516.1 5856785 R 351746 CDS YP_001270517.1 148550415 5190983 5857832..5858806 1 NC_009512.1 TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel; TonB-system energizer ExbB type-1 5858806 5190983 Pput_5215 Pseudomonas putida F1 TonB-system energizer ExbB type-1 YP_001270517.1 5857832 D 351746 CDS YP_001270518.1 148550416 5193667 5858810..5859238 1 NC_009512.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 5859238 5193667 Pput_5216 Pseudomonas putida F1 biopolymer transport protein ExbD YP_001270518.1 5858810 D 351746 CDS YP_001270519.1 148550417 5193668 5859235..5859966 1 NC_009512.1 TIGRFAM: TonB family protein; TonB family protein 5859966 5193668 Pput_5217 Pseudomonas putida F1 TonB family protein YP_001270519.1 5859235 D 351746 CDS YP_001270520.1 148550418 5190204 5860061..5860987 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5860987 5190204 Pput_5218 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270520.1 5860061 D 351746 CDS YP_001270521.1 148550419 5190205 5860991..5863069 1 NC_009512.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 5863069 5190205 Pput_5219 Pseudomonas putida F1 ATP-dependent DNA helicase RecG YP_001270521.1 5860991 D 351746 CDS YP_001270522.1 148550420 5193876 5863148..5864551 1 NC_009512.1 PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein 5864551 5193876 Pput_5220 Pseudomonas putida F1 putative signal transduction protein YP_001270522.1 5863148 D 351746 CDS YP_001270523.1 148550421 5193877 complement(5864681..5865055) 1 NC_009512.1 hypothetical protein 5865055 5193877 Pput_5221 Pseudomonas putida F1 hypothetical protein YP_001270523.1 5864681 R 351746 CDS YP_001270524.1 148550422 5193781 complement(5865204..5865503) 1 NC_009512.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 5865503 5193781 Pput_5222 Pseudomonas putida F1 histone family protein DNA-binding protein YP_001270524.1 5865204 R 351746 CDS YP_001270525.1 148550423 5193782 complement(5865691..5866839) 1 NC_009512.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5866839 5193782 Pput_5223 Pseudomonas putida F1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001270525.1 5865691 R 351746 CDS YP_001270526.1 148550424 5192411 complement(5866856..5867023) 1 NC_009512.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 5867023 5192411 Pput_5224 Pseudomonas putida F1 rubredoxin-type Fe(Cys)4 protein YP_001270526.1 5866856 R 351746 CDS YP_001270527.1 148550425 5192412 5867249..5867806 1 NC_009512.1 PFAM: Chorismate lyase; chorismate lyase 5867806 5192412 Pput_5225 Pseudomonas putida F1 chorismate lyase YP_001270527.1 5867249 D 351746 CDS YP_001270528.1 148550426 5195181 5867806..5868696 1 NC_009512.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 5868696 ubiA 5195181 ubiA Pseudomonas putida F1 4-hydroxybenzoate octaprenyltransferase YP_001270528.1 5867806 D 351746 CDS YP_001270529.1 148550427 5195182 complement(5868817..5869188) 1 NC_009512.1 PFAM: Secreted repeat of unknown function; hypothetical protein 5869188 5195182 Pput_5227 Pseudomonas putida F1 hypothetical protein YP_001270529.1 5868817 R 351746 CDS YP_001270530.1 148550428 5193243 5869361..5870050 1 NC_009512.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 5870050 5193243 Pput_5228 Pseudomonas putida F1 two component transcriptional regulator YP_001270530.1 5869361 D 351746 CDS YP_001270531.1 148550429 5193244 5870099..5871406 1 NC_009512.1 TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; PAS/PAC sensor signal transduction histidine kinase 5871406 5193244 Pput_5229 Pseudomonas putida F1 PAS/PAC sensor signal transduction histidine kinase YP_001270531.1 5870099 D 351746 CDS YP_001270532.1 148550430 5192002 5871580..5872920 1 NC_009512.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 5872920 5192002 Pput_5230 Pseudomonas putida F1 hypothetical protein YP_001270532.1 5871580 D 351746 CDS YP_001270533.1 148550431 5192003 complement(5873041..5873937) 1 NC_009512.1 PFAM: peptidase M23B; peptidase M23B 5873937 5192003 Pput_5231 Pseudomonas putida F1 peptidase M23B YP_001270533.1 5873041 R 351746 CDS YP_001270534.1 148550432 5194336 complement(5874084..5874968) 1 NC_009512.1 PFAM: response regulator receiver; response regulator receiver protein 5874968 5194336 Pput_5232 Pseudomonas putida F1 response regulator receiver protein YP_001270534.1 5874084 R 351746 CDS YP_001270535.1 148550433 5194337 complement(5875132..5875902) 1 NC_009512.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 5875902 5194337 Pput_5233 Pseudomonas putida F1 phosphate uptake regulator PhoU YP_001270535.1 5875132 R 351746 CDS YP_001270536.1 148550434 5194425 complement(5876004..5876837) 1 NC_009512.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 5876837 5194425 Pput_5234 Pseudomonas putida F1 phosphate transporter ATP-binding protein YP_001270536.1 5876004 R 351746 CDS YP_001270537.1 148550435 5194426 complement(5876910..5878580) 1 NC_009512.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 5878580 5194426 Pput_5235 Pseudomonas putida F1 phosphate ABC transporter permease YP_001270537.1 5876910 R 351746 CDS YP_001270538.1 148550436 5194824 complement(5878598..5880886) 1 NC_009512.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5880886 5194824 Pput_5236 Pseudomonas putida F1 binding-protein-dependent transport system inner membrane protein YP_001270538.1 5878598 R 351746 CDS YP_001270539.1 148550437 5194825 complement(5881025..5882023) 1 NC_009512.1 TIGRFAM: phosphate binding protein; phosphate binding protein 5882023 5194825 Pput_5237 Pseudomonas putida F1 phosphate binding protein YP_001270539.1 5881025 R 351746 CDS YP_001270540.1 148550438 5194996 complement(5882260..5883549) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5883549 5194996 Pput_5238 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270540.1 5882260 R 351746 CDS YP_001270541.1 148550439 5194997 5883911..5884309 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 5884309 5194997 Pput_5239 Pseudomonas putida F1 thioesterase superfamily protein YP_001270541.1 5883911 D 351746 CDS YP_001270542.1 148550440 5194755 5884381..5885277 1 NC_009512.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 5885277 5194755 Pput_5240 Pseudomonas putida F1 aldose 1-epimerase YP_001270542.1 5884381 D 351746 CDS YP_001270543.1 148550441 5194756 complement(5885399..5885932) 1 NC_009512.1 hypothetical protein 5885932 5194756 Pput_5241 Pseudomonas putida F1 hypothetical protein YP_001270543.1 5885399 R 351746 CDS YP_001270544.1 148550442 5190566 complement(5885981..5886226) 1 NC_009512.1 PFAM: Transglycosylase-associated protein; transglycosylase-associated protein 5886226 5190566 Pput_5242 Pseudomonas putida F1 transglycosylase-associated protein YP_001270544.1 5885981 R 351746 CDS YP_001270545.1 148550443 5190567 complement(5886335..5887417) 1 NC_009512.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase 5887417 5190567 Pput_5243 Pseudomonas putida F1 phosphoribosylaminoimidazole carboxylase ATPase YP_001270545.1 5886335 R 351746 CDS YP_001270546.1 148550444 5192659 complement(5887428..5887919) 1 NC_009512.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 5887919 5192659 Pput_5244 Pseudomonas putida F1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001270546.1 5887428 R 351746 CDS YP_001270547.1 148550445 5192660 5888189..5888815 1 NC_009512.1 hypothetical protein 5888815 5192660 Pput_5245 Pseudomonas putida F1 hypothetical protein YP_001270547.1 5888189 D 351746 CDS YP_001270548.1 148550446 5190898 complement(5888807..5889733) 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5889733 5190898 Pput_5246 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270548.1 5888807 R 351746 CDS YP_001270549.1 148550447 5190899 5889895..5891331 1 NC_009512.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 5891331 aspA 5190899 aspA Pseudomonas putida F1 aspartate ammonia-lyase YP_001270549.1 5889895 D 351746 CDS YP_001270550.1 148550448 5193167 5891562..5892554 1 NC_009512.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 5892554 5193167 Pput_5248 Pseudomonas putida F1 helix-turn-helix domain-containing protein YP_001270550.1 5891562 D 351746 CDS YP_001270551.1 148550449 5193168 5892851..5893894 1 NC_009512.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 5893894 5193168 Pput_5249 Pseudomonas putida F1 histone deacetylase superfamily protein YP_001270551.1 5892851 D 351746 CDS YP_001270552.1 148550450 5192402 5893894..5894997 1 NC_009512.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5894997 5192402 Pput_5250 Pseudomonas putida F1 extracellular solute-binding protein YP_001270552.1 5893894 D 351746 CDS YP_001270553.1 148550451 5192403 complement(5895029..5896558) 1 NC_009512.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 5896558 5192403 Pput_5251 Pseudomonas putida F1 GntR family transcriptional regulator YP_001270553.1 5895029 R 351746 CDS YP_001270554.1 148550452 5193328 5896648..5897277 1 NC_009512.1 PFAM: Negative transcriptional regulator; FMN-binding negative transcriptional regulator 5897277 5193328 Pput_5252 Pseudomonas putida F1 FMN-binding negative transcriptional regulator YP_001270554.1 5896648 D 351746 CDS YP_001270555.1 148550453 5193329 5897289..5897735 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5897735 5193329 Pput_5253 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001270555.1 5897289 D 351746 CDS YP_001270556.1 148550454 5193456 5897743..5898414 1 NC_009512.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5898414 5193456 Pput_5254 Pseudomonas putida F1 N-acetyltransferase GCN5 YP_001270556.1 5897743 D 351746 CDS YP_001270557.1 148550455 5193457 complement(5898576..5900384) 1 NC_009512.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 5900384 5193457 Pput_5255 Pseudomonas putida F1 pyruvate carboxylase subunit B YP_001270557.1 5898576 R 351746 CDS YP_001270558.1 148550456 5193189 complement(5900396..5901811) 1 NC_009512.1 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A 5901811 5193189 Pput_5256 Pseudomonas putida F1 pyruvate carboxylase subunit A YP_001270558.1 5900396 R 351746 CDS YP_001270559.1 148550457 5193190 5902001..5902963 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5902963 5193190 Pput_5257 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270559.1 5902001 D 351746 CDS YP_001270560.1 148550458 5193266 complement(5903336..5904202) 1 NC_009512.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator 5904202 5193266 Pput_5258 Pseudomonas putida F1 RpiR family transcriptional regulator YP_001270560.1 5903336 R 351746 CDS YP_001270561.1 148550459 5193267 5904306..5905748 1 NC_009512.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 5905748 5193267 Pput_5259 Pseudomonas putida F1 glucose-6-phosphate 1-dehydrogenase YP_001270561.1 5904306 D 351746 CDS YP_001270562.1 148550460 5193614 5905963..5908149 1 NC_009512.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 5908149 uvrD 5193614 uvrD Pseudomonas putida F1 DNA-dependent helicase II YP_001270562.1 5905963 D 351746 CDS YP_001270563.1 148550461 5193615 5908241..5909134 1 NC_009512.1 PFAM: import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 5909134 5193615 Pput_5261 Pseudomonas putida F1 import inner membrane translocase subunit Tim44 YP_001270563.1 5908241 D 351746 CDS YP_001270564.1 148550462 5190495 5909248..5909655 1 NC_009512.1 hypothetical protein 5909655 5190495 Pput_5262 Pseudomonas putida F1 hypothetical protein YP_001270564.1 5909248 D 351746 CDS YP_001270565.1 148550463 5190496 complement(5909818..5911578) 1 NC_009512.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 5911578 5190496 Pput_5263 Pseudomonas putida F1 sodium/hydrogen exchanger YP_001270565.1 5909818 R 351746 CDS YP_001270566.1 148550464 5193768 5911918..5912403 1 NC_009512.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 5912403 5193768 Pput_5264 Pseudomonas putida F1 thioesterase superfamily protein YP_001270566.1 5911918 D 351746 CDS YP_001270567.1 148550465 5193769 complement(5912400..5913272) 1 NC_009512.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 5913272 5193769 Pput_5265 Pseudomonas putida F1 pyridoxamine kinase YP_001270567.1 5912400 R 351746 CDS YP_001270568.1 148550466 5191456 5913393..5913785 1 NC_009512.1 hypothetical protein 5913785 5191456 Pput_5266 Pseudomonas putida F1 hypothetical protein YP_001270568.1 5913393 D 351746 CDS YP_001270569.1 148550467 5191457 complement(5913786..5914757) 1 NC_009512.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 5914757 5191457 Pput_5267 Pseudomonas putida F1 cobalamin synthesis protein, P47K YP_001270569.1 5913786 R 351746 CDS YP_001270570.1 148550468 5195501 complement(5914798..5915424) 1 NC_009512.1 PFAM: Protein of unknown function DUF1826; hypothetical protein 5915424 5195501 Pput_5268 Pseudomonas putida F1 hypothetical protein YP_001270570.1 5914798 R 351746 CDS YP_001270571.1 148550469 5195502 complement(5915421..5916629) 1 NC_009512.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 5916629 5195502 Pput_5269 Pseudomonas putida F1 cobalamin synthesis protein, P47K YP_001270571.1 5915421 R 351746 CDS YP_001270572.1 148550470 5195311 5916744..5917124 1 NC_009512.1 hypothetical protein 5917124 5195311 Pput_5270 Pseudomonas putida F1 hypothetical protein YP_001270572.1 5916744 D 351746 CDS YP_001270573.1 148550471 5195312 complement(5917396..5917923) 1 NC_009512.1 hypothetical protein 5917923 5195312 Pput_5271 Pseudomonas putida F1 hypothetical protein YP_001270573.1 5917396 R 351746 CDS YP_001270574.1 148550472 5193520 5918056..5919495 1 NC_009512.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 5919495 cls 5193520 cls Pseudomonas putida F1 cardiolipin synthetase YP_001270574.1 5918056 D 351746 CDS YP_001270575.1 148550473 5193521 complement(5919568..5920824) 1 NC_009512.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 5920824 5193521 Pput_5273 Pseudomonas putida F1 cyclopropane-fatty-acyl-phospholipid synthase YP_001270575.1 5919568 R 351746 CDS YP_001270576.1 148550474 5191724 5920960..5922360 1 NC_009512.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 5922360 5191724 Pput_5274 Pseudomonas putida F1 dihydrolipoamide dehydrogenase YP_001270576.1 5920960 D 351746 CDS YP_001270577.1 148550475 5191725 complement(5922472..5923479) 1 NC_009512.1 PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 5923479 5191725 Pput_5275 Pseudomonas putida F1 transketolase, central region YP_001270577.1 5922472 R 351746 CDS YP_001270578.1 148550476 5191450 complement(5923476..5924324) 1 NC_009512.1 PFAM: Transketolase domain protein; transketolase domain-containing protein 5924324 5191450 Pput_5276 Pseudomonas putida F1 transketolase domain-containing protein YP_001270578.1 5923476 R 351746 CDS YP_001270579.1 148550477 5191451 complement(5924343..5925644) 1 NC_009512.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 5925644 5191451 Pput_5277 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270579.1 5924343 R 351746 CDS YP_001270580.1 148550478 5192149 complement(5925712..5926461) 1 NC_009512.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 5926461 5192149 Pput_5278 Pseudomonas putida F1 short-chain dehydrogenase/reductase SDR YP_001270580.1 5925712 R 351746 CDS YP_001270581.1 148550479 5192150 5926657..5927574 1 NC_009512.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5927574 5192150 Pput_5279 Pseudomonas putida F1 LysR family transcriptional regulator YP_001270581.1 5926657 D 351746 CDS YP_001270582.1 148550480 5193925 5927821..5928444 1 NC_009512.1 PFAM: Methyltransferase type 12; type 12 methyltransferase 5928444 5193925 Pput_5280 Pseudomonas putida F1 type 12 methyltransferase YP_001270582.1 5927821 D 351746 CDS YP_001270583.1 148550481 5193926 complement(5928954..5930195) 1 NC_009512.1 PFAM: outer membrane porin; outer membrane porin 5930195 5193926 Pput_5281 Pseudomonas putida F1 outer membrane porin YP_001270583.1 5928954 R 351746 CDS YP_001270584.1 148550482 5191366 complement(5930410..5931339) 1 NC_009512.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 5931339 5191366 Pput_5282 Pseudomonas putida F1 dihydrodipicolinate synthetase YP_001270584.1 5930410 R 351746 CDS YP_001270585.1 148550483 5191367 complement(5931463..5932854) 1 NC_009512.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5932854 5191367 Pput_5283 Pseudomonas putida F1 major facilitator superfamily transporter YP_001270585.1 5931463 R 351746 CDS YP_001270586.1 148550484 5193324 complement(5933469..5933681) 1 NC_009512.1 hypothetical protein 5933681 5193324 Pput_5284 Pseudomonas putida F1 hypothetical protein YP_001270586.1 5933469 R 351746 CDS YP_001270587.1 148550485 5193325 complement(5933713..5933874) 1 NC_009512.1 hypothetical protein 5933874 5193325 Pput_5285 Pseudomonas putida F1 hypothetical protein YP_001270587.1 5933713 R 351746 CDS YP_001270588.1 148550486 5194490 5934190..5934912 1 NC_009512.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 5934912 5194490 Pput_5286 Pseudomonas putida F1 two component transcriptional regulator YP_001270588.1 5934190 D 351746 CDS YP_001270589.1 148550487 5194491 5935032..5936309 1 NC_009512.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; histidine kinase 5936309 5194491 Pput_5287 Pseudomonas putida F1 histidine kinase YP_001270589.1 5935032 D 351746 CDS YP_001270590.1 148550488 5190907 5936418..5937254 1 NC_009512.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; regulatory protein IclR 5937254 5190907 Pput_5288 Pseudomonas putida F1 regulatory protein IclR YP_001270590.1 5936418 D 351746 CDS YP_001270591.1 148550489 5190908 5937708..5938403 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 5938403 5190908 Pput_5289 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit A YP_001270591.1 5937708 D 351746 CDS YP_001270592.1 148550490 5194894 5938412..5939053 1 NC_009512.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 5939053 5194894 Pput_5290 Pseudomonas putida F1 3-oxoacid CoA-transferase subunit B YP_001270592.1 5938412 D 351746 CDS YP_001270593.1 148550491 5194895 complement(5939399..5941234) 1 NC_009512.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 5941234 5194895 Pput_5291 Pseudomonas putida F1 glucosamine--fructose-6-phosphate aminotransferase YP_001270593.1 5939399 R 351746 CDS YP_001270594.1 148550492 5193803 complement(5941238..5942014) 1 NC_009512.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 5942014 5193803 Pput_5292 Pseudomonas putida F1 DeoR family transcriptional regulator YP_001270594.1 5941238 R 351746 CDS YP_001270595.1 148550493 5193804 complement(5942205..5943572) 1 NC_009512.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase 5943572 5193804 Pput_5293 Pseudomonas putida F1 UDP-N-acetylglucosamine pyrophosphorylase YP_001270595.1 5942205 R 351746 CDS YP_001270596.1 148550494 5191053 complement(5943691..5944110) 1 NC_009512.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 5944110 atpC 5191053 atpC Pseudomonas putida F1 F0F1 ATP synthase subunit epsilon YP_001270596.1 5943691 R 351746 CDS YP_001270597.1 148550495 5191054 complement(5944154..5945530) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 5945530 5191054 Pput_5295 Pseudomonas putida F1 F0F1 ATP synthase subunit beta YP_001270597.1 5944154 R 351746 CDS YP_001270598.1 148550496 5193574 complement(5945558..5946418) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 5946418 5193574 Pput_5296 Pseudomonas putida F1 F0F1 ATP synthase subunit gamma YP_001270598.1 5945558 R 351746 CDS YP_001270599.1 148550497 5193575 complement(5946467..5948011) 1 NC_009512.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 5948011 5193575 Pput_5297 Pseudomonas putida F1 F0F1 ATP synthase subunit alpha YP_001270599.1 5946467 R 351746 CDS YP_001270600.1 148550498 5190621 complement(5948033..5948569) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 5948569 5190621 Pput_5298 Pseudomonas putida F1 F0F1 ATP synthase subunit delta YP_001270600.1 5948033 R 351746 CDS YP_001270601.1 148550499 5190622 complement(5948582..5949052) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 5949052 5190622 Pput_5299 Pseudomonas putida F1 F0F1 ATP synthase subunit B YP_001270601.1 5948582 R 351746 CDS YP_001270602.1 148550500 5195265 complement(5949109..5949366) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 5949366 5195265 Pput_5300 Pseudomonas putida F1 F0F1 ATP synthase subunit C YP_001270602.1 5949109 R 351746 CDS YP_001270603.1 148550501 5195266 complement(5949511..5950380) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 5950380 5195266 Pput_5301 Pseudomonas putida F1 F0F1 ATP synthase subunit A YP_001270603.1 5949511 R 351746 CDS YP_001270604.1 148550502 5190248 complement(5950397..5950804) 1 NC_009512.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 5950804 5190248 Pput_5302 Pseudomonas putida F1 F0F1 ATP synthase subunit I YP_001270604.1 5950397 R 351746 CDS YP_001270605.1 148550503 5190249 complement(5950954..5951826) 1 NC_009512.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; parB-like partition protein 5951826 5190249 Pput_5303 Pseudomonas putida F1 parB-like partition protein YP_001270605.1 5950954 R 351746 CDS YP_001270606.1 148550504 5193719 complement(5951836..5952627) 1 NC_009512.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 5952627 5193719 Pput_5304 Pseudomonas putida F1 cobyrinic acid a,c-diamide synthase YP_001270606.1 5951836 R 351746 CDS YP_001270607.1 148550505 5193720 complement(5952646..5953296) 1 NC_009512.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5953296 gidB 5193720 gidB Pseudomonas putida F1 16S rRNA methyltransferase GidB YP_001270607.1 5952646 R 351746 CDS YP_001270608.1 148550506 5190199 complement(5953293..5955185) 1 NC_009512.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5955185 5190199 Pput_5306 Pseudomonas putida F1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001270608.1 5953293 R 351746 CDS YP_001270609.1 148550507 5190200 complement(5955512..5955742) 1 NC_009512.1 hypothetical protein 5955742 5190200 Pput_5307 Pseudomonas putida F1 hypothetical protein YP_001270609.1 5955512 R 351746 CDS YP_001270610.1 148550508 5193284 complement(5955819..5957189) 1 NC_009512.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5957189 trmE 5193284 trmE Pseudomonas putida F1 tRNA modification GTPase TrmE YP_001270610.1 5955819 R 351746 CDS YP_001270611.1 148550509 5193285 complement(5957278..5958960) 1 NC_009512.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 5958960 5193285 Pput_5309 Pseudomonas putida F1 putative inner membrane protein translocase component YidC YP_001270611.1 5957278 R 351746 CDS YP_001270612.1 148550510 5190980 complement(5958963..5959208) 1 NC_009512.1 PFAM: protein of unknown function DUF37; hypothetical protein 5959208 5190980 Pput_5310 Pseudomonas putida F1 hypothetical protein YP_001270612.1 5958963 R 351746 CDS YP_001270613.1 148550511 5190981 complement(5959201..5959605) 1 NC_009512.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 5959605 rnpA 5190981 rnpA Pseudomonas putida F1 ribonuclease P YP_001270613.1 5959201 R 351746 CDS