-- dump date 20140620_010310 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 351746000001 SEQ_END SEQ_END NC_009512.1 5959964 5959964 DR NC_009512.1; contig end 5959964..5959964 Pseudomonas putida F1 YP_001265362.1 CDS dnaA NC_009512.1 385 1902 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 385..1902 Pseudomonas putida F1 5194200 YP_001265363.1 CDS Pput_0002 NC_009512.1 1943 3046 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1943..3046 Pseudomonas putida F1 5190870 YP_001265364.1 CDS recF NC_009512.1 3062 4165 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3062..4165 Pseudomonas putida F1 5192242 YP_001265365.1 CDS gyrB NC_009512.1 4170 6590 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4170..6590 Pseudomonas putida F1 5192243 YP_001265366.1 CDS Pput_0005 NC_009512.1 7427 8065 D hypothetical protein 7427..8065 Pseudomonas putida F1 5193319 YP_001265367.1 CDS Pput_0006 NC_009512.1 8046 10004 D PFAM: Integrase, catalytic region; integrase catalytic subunit 8046..10004 Pseudomonas putida F1 5193320 YP_001265368.1 CDS Pput_0007 NC_009512.1 10001 10960 D SMART: AAA ATPase; ATPase AAA 10001..10960 Pseudomonas putida F1 5193321 YP_001265369.1 CDS Pput_0008 NC_009512.1 11036 12952 D hypothetical protein 11036..12952 Pseudomonas putida F1 5193463 YP_001265370.1 CDS Pput_0009 NC_009512.1 13009 13368 D hypothetical protein 13009..13368 Pseudomonas putida F1 5193464 YP_001265371.1 CDS Pput_0010 NC_009512.1 13740 14072 D hypothetical protein 13740..14072 Pseudomonas putida F1 5193465 YP_001265372.1 CDS Pput_0011 NC_009512.1 14170 14625 R PFAM: protein of unknown function DUF411; hypothetical protein complement(14170..14625) Pseudomonas putida F1 5191125 YP_001265373.1 CDS Pput_0012 NC_009512.1 14615 15394 R hypothetical protein complement(14615..15394) Pseudomonas putida F1 5191126 YP_001265374.1 CDS Pput_0013 NC_009512.1 15404 16519 R PFAM: copper resistance B precursor; copper resistance B complement(15404..16519) Pseudomonas putida F1 5191127 YP_001265375.1 CDS Pput_0014 NC_009512.1 16509 16850 R hypothetical protein complement(16509..16850) Pseudomonas putida F1 5192384 YP_001265376.1 CDS Pput_0015 NC_009512.1 16847 18862 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; CopA family copper resistance protein complement(16847..18862) Pseudomonas putida F1 5192385 YP_001265377.1 CDS Pput_0016 NC_009512.1 18988 19194 R hypothetical protein complement(18988..19194) Pseudomonas putida F1 5192316 YP_001265378.1 CDS Pput_0017 NC_009512.1 19361 20038 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 19361..20038 Pseudomonas putida F1 5192317 YP_001265379.1 CDS Pput_0018 NC_009512.1 20038 21444 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 20038..21444 Pseudomonas putida F1 5192318 YP_001265380.1 CDS Pput_0019 NC_009512.1 21481 21828 D hypothetical protein 21481..21828 Pseudomonas putida F1 5193366 YP_001265381.1 CDS Pput_0020 NC_009512.1 21915 23168 D PFAM: outer membrane efflux protein; outer membrane efflux protein 21915..23168 Pseudomonas putida F1 5193367 YP_001265382.1 CDS Pput_0021 NC_009512.1 23165 24631 D TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 23165..24631 Pseudomonas putida F1 5191809 YP_001265383.1 CDS Pput_0022 NC_009512.1 24628 27786 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 24628..27786 Pseudomonas putida F1 5191810 YP_001265384.1 CDS Pput_0023 NC_009512.1 27783 28130 D hypothetical protein 27783..28130 Pseudomonas putida F1 5191811 YP_001265385.1 CDS Pput_0025 NC_009512.1 28545 29204 R S-isoprenylcysteine methyltransferase-like protein complement(28545..29204) Pseudomonas putida F1 5191026 YP_001265386.1 CDS Pput_0026 NC_009512.1 29201 29476 R hypothetical protein complement(29201..29476) Pseudomonas putida F1 5193078 YP_001265387.1 CDS Pput_0027 NC_009512.1 29502 29957 R hypothetical protein complement(29502..29957) Pseudomonas putida F1 5193079 YP_001265388.1 CDS Pput_0028 NC_009512.1 30096 31118 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein complement(30096..31118) Pseudomonas putida F1 5195145 YP_001265389.1 CDS Pput_0029 NC_009512.1 31384 31584 R PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(31384..31584) Pseudomonas putida F1 5195146 YP_001265390.1 CDS Pput_0030 NC_009512.1 31922 34297 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase complement(31922..34297) Pseudomonas putida F1 5194841 YP_001265391.1 CDS Pput_0031 NC_009512.1 34482 34640 R hypothetical protein complement(34482..34640) Pseudomonas putida F1 5194842 YP_001265392.1 CDS Pput_0033 NC_009512.1 35432 36466 D hypothetical protein 35432..36466 Pseudomonas putida F1 5194215 YP_001265393.1 CDS Pput_0034 NC_009512.1 36650 37015 R hypothetical protein complement(36650..37015) Pseudomonas putida F1 5192251 YP_001265394.1 CDS Pput_0035 NC_009512.1 37298 37546 D hypothetical protein 37298..37546 Pseudomonas putida F1 5192252 YP_001265395.1 CDS Pput_0036 NC_009512.1 37857 38780 D hypothetical protein 37857..38780 Pseudomonas putida F1 5192888 YP_001265396.1 CDS Pput_0037 NC_009512.1 38986 39210 D hypothetical protein 38986..39210 Pseudomonas putida F1 5192889 YP_001265397.1 CDS Pput_0038 NC_009512.1 39225 39431 D hypothetical protein 39225..39431 Pseudomonas putida F1 5192890 YP_001265398.1 CDS Pput_0039 NC_009512.1 39826 41523 R PFAM: sulfatase; protein of unknown function DUF1705; hypothetical protein complement(39826..41523) Pseudomonas putida F1 5192893 YP_001265399.1 CDS Pput_0040 NC_009512.1 42407 43312 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 42407..43312 Pseudomonas putida F1 5192894 YP_001265400.1 CDS Pput_0041 NC_009512.1 43470 43820 D hypothetical protein 43470..43820 Pseudomonas putida F1 5194170 YP_001265401.1 CDS Pput_0042 NC_009512.1 43853 44179 R hypothetical protein complement(43853..44179) Pseudomonas putida F1 5194171 YP_001265402.1 CDS Pput_0043 NC_009512.1 44869 45543 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 44869..45543 Pseudomonas putida F1 5194172 YP_001265403.1 CDS Pput_0044 NC_009512.1 45540 46958 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 45540..46958 Pseudomonas putida F1 5191676 YP_001265404.1 CDS Pput_0045 NC_009512.1 47016 47603 R hypothetical protein complement(47016..47603) Pseudomonas putida F1 5191677 YP_001265405.1 CDS Pput_0046 NC_009512.1 47870 48091 D hypothetical protein 47870..48091 Pseudomonas putida F1 5191678 YP_001265406.1 CDS Pput_0047 NC_009512.1 48174 49628 R PFAM: glycosyl transferase, family 39; glycosyl transferase family protein complement(48174..49628) Pseudomonas putida F1 5192807 YP_001265407.1 CDS Pput_0048 NC_009512.1 49622 50605 R PFAM: glycosyl transferase, family 2; ribonuclease III complement(49622..50605) Pseudomonas putida F1 5192808 YP_001265408.1 CDS Pput_0049 NC_009512.1 50571 50990 R PFAM: GtrA family protein; GtrA family protein complement(50571..50990) Pseudomonas putida F1 5192028 YP_001265409.1 CDS Pput_0050 NC_009512.1 51248 52216 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 51248..52216 Pseudomonas putida F1 5192029 YP_001265410.1 CDS Pput_0051 NC_009512.1 52427 53734 D PFAM: phosphate-selective porin O and P; phosphate-selective porin O and P 52427..53734 Pseudomonas putida F1 5192030 YP_001265411.1 CDS Pput_0052 NC_009512.1 53754 53888 D hypothetical protein 53754..53888 Pseudomonas putida F1 5191783 YP_001265412.1 CDS Pput_0053 NC_009512.1 54033 55058 D hypothetical protein 54033..55058 Pseudomonas putida F1 5191784 YP_001265413.1 CDS Pput_0054 NC_009512.1 55186 55410 D hypothetical protein 55186..55410 Pseudomonas putida F1 5191726 YP_001265414.1 CDS Pput_0055 NC_009512.1 55503 57500 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(55503..57500) Pseudomonas putida F1 5191727 YP_001265415.1 CDS Pput_0056 NC_009512.1 57703 58026 R hypothetical protein complement(57703..58026) Pseudomonas putida F1 5191728 YP_001265416.1 CDS Pput_0057 NC_009512.1 58189 61350 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein complement(58189..61350) Pseudomonas putida F1 5194381 YP_001265417.1 CDS Pput_0058 NC_009512.1 61375 62625 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(61375..62625) Pseudomonas putida F1 5194382 YP_001265418.1 CDS Pput_0059 NC_009512.1 62694 63878 R PFAM: outer membrane efflux protein; outer membrane efflux protein complement(62694..63878) Pseudomonas putida F1 5191174 YP_001265419.1 CDS Pput_0060 NC_009512.1 64369 65712 D PFAM: outer membrane porin; outer membrane porin 64369..65712 Pseudomonas putida F1 5191175 YP_001265420.1 CDS Pput_0061 NC_009512.1 66201 66875 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 66201..66875 Pseudomonas putida F1 5191176 YP_001265421.1 CDS Pput_0062 NC_009512.1 66993 67316 D hypothetical protein 66993..67316 Pseudomonas putida F1 5194864 YP_001265422.1 CDS Pput_0063 NC_009512.1 67418 68029 R hypothetical protein complement(67418..68029) Pseudomonas putida F1 5194865 YP_001265423.1 CDS Pput_0064 NC_009512.1 68135 69601 R hypothetical protein complement(68135..69601) Pseudomonas putida F1 5194866 YP_001265424.1 CDS Pput_0065 NC_009512.1 69614 70063 R hypothetical protein complement(69614..70063) Pseudomonas putida F1 5192552 YP_001265425.1 CDS Pput_0066 NC_009512.1 70754 71161 R hypothetical protein complement(70754..71161) Pseudomonas putida F1 5192553 YP_001265426.1 CDS Pput_0067 NC_009512.1 71293 72585 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator complement(71293..72585) Pseudomonas putida F1 5192582 YP_001265427.1 CDS Pput_0068 NC_009512.1 72808 73692 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 72808..73692 Pseudomonas putida F1 5192583 YP_001265428.1 CDS Pput_0069 NC_009512.1 73733 75001 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 73733..75001 Pseudomonas putida F1 5192584 YP_001265429.1 CDS Pput_0070 NC_009512.1 74998 75816 D PFAM: protein of unknown function DUF81; hypothetical protein 74998..75816 Pseudomonas putida F1 5191280 YP_001265430.1 CDS Pput_0071 NC_009512.1 75805 76692 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(75805..76692) Pseudomonas putida F1 5191281 YP_001265431.1 CDS Pput_0072 NC_009512.1 76927 78573 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 76927..78573 Pseudomonas putida F1 5191855 YP_001265432.1 CDS Pput_0073 NC_009512.1 78671 80290 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 78671..80290 Pseudomonas putida F1 5191856 YP_001265433.1 CDS Pput_0074 NC_009512.1 80465 81250 R PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(80465..81250) Pseudomonas putida F1 5191857 YP_001265434.1 CDS Pput_0075 NC_009512.1 81297 81824 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(81297..81824) Pseudomonas putida F1 5191166 YP_001265435.1 CDS glyS NC_009512.1 81828 83882 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(81828..83882) Pseudomonas putida F1 5191167 YP_001265436.1 CDS glyQ NC_009512.1 83879 84826 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(83879..84826) Pseudomonas putida F1 5190902 YP_001265437.1 CDS Pput_0078 NC_009512.1 84910 85461 D TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 84910..85461 Pseudomonas putida F1 5190903 YP_001265438.1 CDS Pput_0079 NC_009512.1 85503 86390 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 85503..86390 Pseudomonas putida F1 5190904 YP_001265439.1 CDS Pput_0080 NC_009512.1 86488 86802 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(86488..86802) Pseudomonas putida F1 5190348 YP_001265440.1 CDS trkA NC_009512.1 86814 88187 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(86814..88187) Pseudomonas putida F1 5190349 YP_001265441.1 CDS Pput_0082 NC_009512.1 88211 89521 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein complement(88211..89521) Pseudomonas putida F1 5190350 YP_001265442.1 CDS fmt NC_009512.1 89518 90450 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(89518..90450) Pseudomonas putida F1 5195176 YP_001265443.1 CDS def NC_009512.1 90511 91017 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(90511..91017) Pseudomonas putida F1 5195177 YP_001265444.1 CDS Pput_0085 NC_009512.1 91224 92321 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 91224..92321 Pseudomonas putida F1 5193907 YP_001265445.1 CDS Pput_0086 NC_009512.1 92364 92921 D PFAM: SUA5/yciO/yrdC, N-terminal domain; SUA5/yciO/yrdC domain-containing protein 92364..92921 Pseudomonas putida F1 5193908 YP_001265446.1 CDS Pput_0087 NC_009512.1 93301 93618 D hypothetical protein 93301..93618 Pseudomonas putida F1 5193909 YP_001265447.1 CDS Pput_0088 NC_009512.1 93745 94722 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(93745..94722) Pseudomonas putida F1 5193294 YP_001265448.1 CDS Pput_0089 NC_009512.1 94857 95768 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 94857..95768 Pseudomonas putida F1 5193295 YP_001265449.1 CDS aroE NC_009512.1 95794 96618 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 95794..96618 Pseudomonas putida F1 5191231 YP_001265450.1 CDS Pput_0091 NC_009512.1 96748 98313 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter complement(96748..98313) Pseudomonas putida F1 5191232 YP_001265451.1 CDS Pput_0092 NC_009512.1 98458 99381 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(98458..99381) Pseudomonas putida F1 5191233 YP_001265452.1 CDS Pput_0093 NC_009512.1 99396 100913 R PFAM: sulfatase; sulfatase complement(99396..100913) Pseudomonas putida F1 5195170 YP_001265453.1 CDS Pput_0094 NC_009512.1 101022 101921 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 101022..101921 Pseudomonas putida F1 5195171 YP_001265454.1 CDS Pput_0095 NC_009512.1 102043 102660 R hypothetical protein complement(102043..102660) Pseudomonas putida F1 5193102 YP_001265455.1 CDS Pput_0096 NC_009512.1 102713 103045 D PFAM: Dopa 4,5-dioxygenase; DOPA 4,5-dioxygenase 102713..103045 Pseudomonas putida F1 5193103 YP_001265456.1 CDS trpA NC_009512.1 103166 103975 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(103166..103975) Pseudomonas putida F1 5193104 YP_001265457.1 CDS Pput_0098 NC_009512.1 103972 105189 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(103972..105189) Pseudomonas putida F1 5193783 YP_001265458.1 CDS Pput_0099 NC_009512.1 105300 106196 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 105300..106196 Pseudomonas putida F1 5193784 YP_001265459.1 CDS Pput_0100 NC_009512.1 106193 106516 R PFAM: protein of unknown function DUF883, ElaB; hypothetical protein complement(106193..106516) Pseudomonas putida F1 5190582 YP_001265460.1 CDS Pput_0101 NC_009512.1 106667 106882 D PFAM: protein of unknown function DUF1458; hypothetical protein 106667..106882 Pseudomonas putida F1 5190583 YP_001265461.1 CDS Pput_0102 NC_009512.1 106983 107204 D PFAM: protein of unknown function DUF1161; hypothetical protein 106983..107204 Pseudomonas putida F1 5191468 YP_001265462.1 CDS Pput_0103 NC_009512.1 107277 108281 R PFAM: luciferase family protein; luciferase family protein complement(107277..108281) Pseudomonas putida F1 5191469 YP_001265463.1 CDS Pput_0104 NC_009512.1 108434 108859 D PFAM: OsmC family protein; OsmC family protein 108434..108859 Pseudomonas putida F1 5191687 YP_001265464.1 CDS Pput_0105 NC_009512.1 108935 109168 D PFAM: protein of unknown function DUF1161; hypothetical protein 108935..109168 Pseudomonas putida F1 5191688 YP_001265465.1 CDS Pput_0106 NC_009512.1 109204 109617 R hypothetical protein complement(109204..109617) Pseudomonas putida F1 5194303 YP_001265466.1 CDS Pput_0107 NC_009512.1 109673 110086 R hypothetical protein complement(109673..110086) Pseudomonas putida F1 5194304 YP_001265467.1 CDS Pput_0108 NC_009512.1 110154 111245 D hypothetical protein 110154..111245 Pseudomonas putida F1 5190375 YP_001265468.1 CDS Pput_0109 NC_009512.1 111351 112064 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(111351..112064) Pseudomonas putida F1 5190671 YP_001265469.1 CDS Pput_0110 NC_009512.1 112061 112609 R carbonic anhydrase complement(112061..112609) Pseudomonas putida F1 5190672 YP_001265470.1 CDS Pput_0111 NC_009512.1 112676 114763 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; oligopeptidase A 112676..114763 Pseudomonas putida F1 5195319 YP_001265471.1 CDS Pput_0112 NC_009512.1 114760 115041 D nucleic acid binding protein 114760..115041 Pseudomonas putida F1 5195320 YP_001265472.1 CDS Pput_0113 NC_009512.1 115166 117160 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; peptidase M3A and M3B, thimet/oligopeptidase F 115166..117160 Pseudomonas putida F1 5195216 YP_001265473.1 CDS Pput_0114 NC_009512.1 117231 118289 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 117231..118289 Pseudomonas putida F1 5195217 YP_001265474.1 CDS Pput_0115 NC_009512.1 118593 119312 D PFAM: carbonic anhydrase; carbonate dehydratase 118593..119312 Pseudomonas putida F1 5191948 YP_001265475.1 CDS Pput_0116 NC_009512.1 119505 121037 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 119505..121037 Pseudomonas putida F1 5191949 YP_001265476.1 CDS Pput_0117 NC_009512.1 121015 121185 R hypothetical protein complement(121015..121185) Pseudomonas putida F1 5190667 YP_001265477.1 CDS Pput_0118 NC_009512.1 121297 121938 R hypothetical protein complement(121297..121938) Pseudomonas putida F1 5190668 YP_001265478.1 CDS Pput_0119 NC_009512.1 122308 123435 D TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; cytochrome c oxidase subunit II 122308..123435 Pseudomonas putida F1 5192062 YP_001265479.1 CDS Pput_0120 NC_009512.1 123479 125068 D TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I 123479..125068 Pseudomonas putida F1 5192063 YP_001265480.1 CDS Pput_0121 NC_009512.1 125078 125644 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 125078..125644 Pseudomonas putida F1 5193142 YP_001265481.1 CDS Pput_0122 NC_009512.1 125661 126548 D PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 125661..126548 Pseudomonas putida F1 5193143 YP_001265482.1 CDS Pput_0123 NC_009512.1 126576 126779 R hypothetical protein complement(126576..126779) Pseudomonas putida F1 5193404 YP_001265483.1 CDS Pput_0124 NC_009512.1 126807 127568 D hypothetical protein 126807..127568 Pseudomonas putida F1 5193405 YP_001265484.1 CDS Pput_0125 NC_009512.1 127537 128118 D hypothetical protein 127537..128118 Pseudomonas putida F1 5194783 YP_001265485.1 CDS Pput_0126 NC_009512.1 128128 129207 D PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly 128128..129207 Pseudomonas putida F1 5194784 YP_001265486.1 CDS Pput_0127 NC_009512.1 129192 130085 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 129192..130085 Pseudomonas putida F1 5193181 YP_001265487.1 CDS Pput_0128 NC_009512.1 130082 130714 D PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 130082..130714 Pseudomonas putida F1 5193182 YP_001265488.1 CDS Pput_0129 NC_009512.1 130844 131614 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(130844..131614) Pseudomonas putida F1 5192212 YP_001265489.1 CDS Pput_0130 NC_009512.1 131679 132350 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(131679..132350) Pseudomonas putida F1 5193398 YP_001265490.1 CDS metN NC_009512.1 132350 133357 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(132350..133357) Pseudomonas putida F1 5193399 YP_001265491.1 CDS katE NC_009512.1 133585 135720 D Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 133585..135720 Pseudomonas putida F1 5191928 YP_001265492.1 CDS Pput_0133 NC_009512.1 135781 136488 R hypothetical protein complement(135781..136488) Pseudomonas putida F1 5191929 YP_001265493.1 CDS Pput_0134 NC_009512.1 136615 137397 R PFAM: ABC-3 protein; ABC-3 protein complement(136615..137397) Pseudomonas putida F1 5194081 YP_001265494.1 CDS Pput_0135 NC_009512.1 137390 138163 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(137390..138163) Pseudomonas putida F1 5194082 YP_001265495.1 CDS Pput_0136 NC_009512.1 138160 138645 R ferric uptake regulator family protein complement(138160..138645) Pseudomonas putida F1 5190968 YP_001265496.1 CDS Pput_0137 NC_009512.1 138712 139620 D PFAM: periplasmic solute binding protein; periplasmic solute binding protein 138712..139620 Pseudomonas putida F1 5190969 YP_001265497.1 CDS Pput_0138 NC_009512.1 139732 140682 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(139732..140682) Pseudomonas putida F1 5191189 YP_001265498.1 CDS Pput_0139 NC_009512.1 140752 141039 R hypothetical protein complement(140752..141039) Pseudomonas putida F1 5191190 YP_001265499.1 CDS Pput_0140 NC_009512.1 141115 143862 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 141115..143862 Pseudomonas putida F1 5191518 YP_001265500.1 CDS engB NC_009512.1 144265 144897 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(144265..144897) Pseudomonas putida F1 5191519 YP_001265501.1 CDS Pput_0142 NC_009512.1 145099 145401 D cytochrome c5-like protein 145099..145401 Pseudomonas putida F1 5192267 YP_001265502.1 CDS Pput_0143 NC_009512.1 145433 146050 D PFAM: cytochrome c, class I; cytochrome c, class I 145433..146050 Pseudomonas putida F1 5192268 YP_001265503.1 CDS Pput_0144 NC_009512.1 146202 146834 D PFAM: DSBA oxidoreductase; DSBA oxidoreductase 146202..146834 Pseudomonas putida F1 5194785 YP_001265504.1 CDS Pput_0145 NC_009512.1 146847 147701 D PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 146847..147701 Pseudomonas putida F1 5194786 YP_001265505.1 CDS Pput_0146 NC_009512.1 147729 149666 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 147729..149666 Pseudomonas putida F1 5194540 YP_001265506.1 CDS Pput_0147 NC_009512.1 149740 150528 D PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 149740..150528 Pseudomonas putida F1 5194541 YP_001265507.1 CDS Pput_0148 NC_009512.1 150719 152326 D PFAM: EAL domain protein; EAL domain-containing protein 150719..152326 Pseudomonas putida F1 5194994 YP_001265508.1 CDS Pput_0149 NC_009512.1 152341 154122 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(152341..154122) Pseudomonas putida F1 5194995 YP_001265509.1 CDS Pput_0150 NC_009512.1 154119 155465 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator complement(154119..155465) Pseudomonas putida F1 5195232 YP_001265510.1 CDS Pput_0151 NC_009512.1 155676 156497 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 155676..156497 Pseudomonas putida F1 5194828 YP_001265511.1 CDS Pput_0152 NC_009512.1 156670 156960 D hypothetical protein 156670..156960 Pseudomonas putida F1 5194829 YP_001265512.1 CDS Pput_0153 NC_009512.1 157004 157165 D PFAM: protein of unknown function DUF1328; hypothetical protein 157004..157165 Pseudomonas putida F1 5192104 YP_001265513.1 CDS Pput_0154 NC_009512.1 157168 157638 D PFAM: Inhibitor of vertebrate lysozyme; inhibitor of vertebrate lysozyme 157168..157638 Pseudomonas putida F1 5192105 YP_001265514.1 CDS gltP NC_009512.1 158382 159710 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 158382..159710 Pseudomonas putida F1 5192978 YP_001265515.1 CDS Pput_0156 NC_009512.1 159858 161087 D PFAM: nucleoside recognition domain protein; nucleoside recognition domain-containing protein 159858..161087 Pseudomonas putida F1 5192979 YP_001265516.1 CDS Pput_0157 NC_009512.1 161069 161704 R ABC transporter auxiliary component-like protein complement(161069..161704) Pseudomonas putida F1 5192712 YP_001265517.1 CDS Pput_0158 NC_009512.1 161701 162639 R PFAM: Mammalian cell entry related domain protein; hypothetical protein complement(161701..162639) Pseudomonas putida F1 5192713 YP_001265518.1 CDS Pput_0159 NC_009512.1 162643 163434 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(162643..163434) Pseudomonas putida F1 5192491 YP_001265519.1 CDS Pput_0160 NC_009512.1 163431 164564 R PFAM: protein of unknown function DUF140; hypothetical protein complement(163431..164564) Pseudomonas putida F1 5192492 YP_001265520.1 CDS Pput_0161 NC_009512.1 164766 165791 R hypothetical protein complement(164766..165791) Pseudomonas putida F1 5192359 YP_001265521.1 CDS Pput_0162 NC_009512.1 165885 167291 R PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein complement(165885..167291) Pseudomonas putida F1 5192360 YP_001265522.1 CDS Pput_0163 NC_009512.1 167322 168980 R TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; sodium-dependent inorganic phosphate (Pi) transporter complement(167322..168980) Pseudomonas putida F1 5191442 YP_001265523.1 CDS Pput_0164 NC_009512.1 169263 170033 R PFAM: Integral membrane protein TerC; integral membrane protein TerC complement(169263..170033) Pseudomonas putida F1 5191443 YP_001265524.1 CDS Pput_0165 NC_009512.1 170103 171410 R TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; CitMHS family citrate/H+ symporter complement(170103..171410) Pseudomonas putida F1 5191749 YP_001265525.1 CDS Pput_0166 NC_009512.1 171678 172079 D PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 171678..172079 Pseudomonas putida F1 5191750 YP_001265526.1 CDS Pput_0167 NC_009512.1 172118 174064 R hypothetical protein complement(172118..174064) Pseudomonas putida F1 5191946 YP_001265527.1 CDS Pput_0168 NC_009512.1 174070 174390 R TIGRFAM: conserverd hypothetical protein; hypothetical protein complement(174070..174390) Pseudomonas putida F1 5191947 YP_001265528.1 CDS Pput_0169 NC_009512.1 174427 174720 R TIGRFAM: conserverd hypothetical protein; hypothetical protein complement(174427..174720) Pseudomonas putida F1 5192392 YP_001265529.1 CDS Pput_0170 NC_009512.1 174810 175127 R TIGRFAM: conserverd hypothetical protein; hypothetical protein complement(174810..175127) Pseudomonas putida F1 5192393 YP_001265530.1 CDS Pput_0171 NC_009512.1 175439 175654 R hypothetical protein complement(175439..175654) Pseudomonas putida F1 5194374 YP_001265531.1 CDS Pput_0172 NC_009512.1 176088 177581 R PFAM: acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase complement(176088..177581) Pseudomonas putida F1 5192255 YP_001265532.1 CDS Pput_0173 NC_009512.1 177768 179204 R PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase complement(177768..179204) Pseudomonas putida F1 5192256 YP_001265533.1 CDS Pput_0174 NC_009512.1 179207 179521 R NAD/NADP transhydrogenase subunit alpha-like protein complement(179207..179521) Pseudomonas putida F1 5194059 YP_001265534.1 CDS Pput_0175 NC_009512.1 179533 180654 R PFAM: alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase complement(179533..180654) Pseudomonas putida F1 5194060 YP_001265535.1 CDS Pput_0176 NC_009512.1 181074 181991 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(181074..181991) Pseudomonas putida F1 5193725 YP_001265536.1 CDS Pput_0177 NC_009512.1 182152 183333 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 182152..183333 Pseudomonas putida F1 5193726 YP_001265537.1 CDS Pput_0178 NC_009512.1 183347 184567 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; formyl-CoA transferase 183347..184567 Pseudomonas putida F1 5193432 YP_001265538.1 CDS Pput_0179 NC_009512.1 190384 192870 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(190384..192870) Pseudomonas putida F1 5194240 YP_001265539.1 CDS Pput_0180 NC_009512.1 192964 193920 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(192964..193920) Pseudomonas putida F1 5191940 YP_001265540.1 CDS Pput_0181 NC_009512.1 193925 194446 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(193925..194446) Pseudomonas putida F1 5191941 YP_001265541.1 CDS Pput_0182 NC_009512.1 194535 195224 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(194535..195224) Pseudomonas putida F1 5193252 YP_001265542.1 CDS Pput_0183 NC_009512.1 195428 196189 D hypothetical protein 195428..196189 Pseudomonas putida F1 5193253 YP_001265543.1 CDS Pput_0184 NC_009512.1 196200 198146 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; diguanylate cyclase/phosphodiesterase 196200..198146 Pseudomonas putida F1 5192186 YP_001265544.1 CDS Pput_0185 NC_009512.1 198302 199678 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein complement(198302..199678) Pseudomonas putida F1 5192187 YP_001265545.1 CDS Pput_0186 NC_009512.1 199668 201824 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(199668..201824) Pseudomonas putida F1 5191608 YP_001265546.1 CDS Pput_0187 NC_009512.1 202214 202531 D hypothetical protein 202214..202531 Pseudomonas putida F1 5191609 YP_001265547.1 CDS Pput_0188 NC_009512.1 202824 229916 D TIGRFAM: conserved repeat domain; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; Two component regulator propeller; SMART: Pyrrolo-quinoline quinone; hypothetical protein 202824..229916 Pseudomonas putida F1 5194475 YP_001265548.1 CDS Pput_0189 NC_009512.1 230062 230403 D hypothetical protein 230062..230403 Pseudomonas putida F1 5194476 YP_001265549.1 CDS Pput_0190 NC_009512.1 230602 231501 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase 230602..231501 Pseudomonas putida F1 5193008 YP_001265550.1 CDS Pput_0191 NC_009512.1 231519 232538 D ABC transporter substrate-binding protein 231519..232538 Pseudomonas putida F1 5193009 YP_001265551.1 CDS Pput_0192 NC_009512.1 232545 233408 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 232545..233408 Pseudomonas putida F1 5191116 YP_001265552.1 CDS Pput_0193 NC_009512.1 233423 234286 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 233423..234286 Pseudomonas putida F1 5191901 YP_001265553.1 CDS Pput_0194 NC_009512.1 234404 235009 R hypothetical protein complement(234404..235009) Pseudomonas putida F1 5191902 YP_001265554.1 CDS Pput_0195 NC_009512.1 235172 235966 D PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 235172..235966 Pseudomonas putida F1 5191108 YP_001265555.1 CDS Pput_0196 NC_009512.1 236174 236626 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 236174..236626 Pseudomonas putida F1 5191109 YP_001265556.1 CDS Pput_0197 NC_009512.1 236623 238710 D PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein 236623..238710 Pseudomonas putida F1 5192746 YP_001265557.1 CDS Pput_0198 NC_009512.1 238707 238919 D PFAM: protein of unknown function DUF1656; hypothetical protein 238707..238919 Pseudomonas putida F1 5192747 YP_001265558.1 CDS Pput_0199 NC_009512.1 238916 239791 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 238916..239791 Pseudomonas putida F1 5192742 YP_001265559.1 CDS Pput_0200 NC_009512.1 239788 241206 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 239788..241206 Pseudomonas putida F1 5192743 YP_001265560.1 CDS Pput_0201 NC_009512.1 241307 242260 D hypothetical protein 241307..242260 Pseudomonas putida F1 5193383 YP_001265561.1 CDS Pput_0202 NC_009512.1 242341 244284 D PFAM: cytochrome c, class I; iron permease FTR1; cytochrome c, class I 242341..244284 Pseudomonas putida F1 5193384 YP_001265562.1 CDS Pput_0203 NC_009512.1 244347 244592 R hypothetical protein complement(244347..244592) Pseudomonas putida F1 5193430 YP_001265563.1 CDS Pput_0204 NC_009512.1 244662 244964 R hypothetical protein complement(244662..244964) Pseudomonas putida F1 5193431 YP_001265564.1 CDS Pput_0205 NC_009512.1 245112 245774 D PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 245112..245774 Pseudomonas putida F1 5192832 YP_001265565.1 CDS Pput_0206 NC_009512.1 245881 247380 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(245881..247380) Pseudomonas putida F1 5192833 YP_001265566.1 CDS Pput_0207 NC_009512.1 247573 248316 D PFAM: response regulator receiver; LytTr DNA-binding region; LytTR family two component transcriptional regulator 247573..248316 Pseudomonas putida F1 5193239 YP_001265567.1 CDS hemC NC_009512.1 248435 249376 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 248435..249376 Pseudomonas putida F1 5193240 YP_001265568.1 CDS Pput_0209 NC_009512.1 249373 250140 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 249373..250140 Pseudomonas putida F1 5193015 YP_001265569.1 CDS Pput_0210 NC_009512.1 250186 251286 D PFAM: protein of unknown function DUF513, hemX; hypothetical protein 250186..251286 Pseudomonas putida F1 5193016 YP_001265570.1 CDS Pput_0211 NC_009512.1 251283 252521 D PFAM: HemY domain protein; HemY domain-containing protein 251283..252521 Pseudomonas putida F1 5192175 YP_001265571.1 CDS Pput_0212 NC_009512.1 252744 253250 D PFAM: Disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 252744..253250 Pseudomonas putida F1 5192176 YP_001265572.1 CDS Pput_0213 NC_009512.1 253482 253952 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 253482..253952 Pseudomonas putida F1 5193019 YP_001265573.1 CDS Pput_0214 NC_009512.1 253961 254599 R PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(253961..254599) Pseudomonas putida F1 5194773 YP_001265574.1 CDS Pput_0215 NC_009512.1 254778 255800 D alginate regulatory protein AlgP 254778..255800 Pseudomonas putida F1 5194774 YP_001265575.1 CDS Pput_0216 NC_009512.1 255779 256258 R hypothetical protein complement(255779..256258) Pseudomonas putida F1 5191594 YP_001265576.1 CDS Pput_0217 NC_009512.1 256309 258219 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 256309..258219 Pseudomonas putida F1 5191595 YP_001265577.1 CDS Pput_0218 NC_009512.1 258219 258806 D hypothetical protein 258219..258806 Pseudomonas putida F1 5192122 YP_001265578.1 CDS Pput_0219 NC_009512.1 259005 259637 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 259005..259637 Pseudomonas putida F1 5192123 YP_001265579.1 CDS Pput_0220 NC_009512.1 259683 260444 R PFAM: band 7 protein; hypothetical protein complement(259683..260444) Pseudomonas putida F1 5194127 YP_001265580.1 CDS Pput_0221 NC_009512.1 260441 261787 R PFAM: protein of unknown function DUF107; hypothetical protein complement(260441..261787) Pseudomonas putida F1 5194128 YP_001265581.1 CDS Pput_0222 NC_009512.1 261886 262344 D PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 261886..262344 Pseudomonas putida F1 5194953 YP_001265582.1 CDS Pput_0223 NC_009512.1 262406 262648 D hypothetical protein 262406..262648 Pseudomonas putida F1 5194954 YP_001265583.1 CDS Pput_0224 NC_009512.1 262718 263356 D hypothetical protein 262718..263356 Pseudomonas putida F1 5193049 YP_001265584.1 CDS Pput_0225 NC_009512.1 263363 263800 R PFAM: CBS domain containing protein; hypothetical protein complement(263363..263800) Pseudomonas putida F1 5193050 YP_001265585.1 CDS Pput_0226 NC_009512.1 263971 265728 R TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; hypothetical protein complement(263971..265728) Pseudomonas putida F1 5194837 YP_001265586.1 CDS gabD NC_009512.1 266409 267851 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 266409..267851 Pseudomonas putida F1 5195128 YP_001265587.1 CDS Pput_0229 NC_009512.1 268034 269311 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 268034..269311 Pseudomonas putida F1 5195326 YP_001265588.1 CDS Pput_0230 NC_009512.1 269449 270708 D PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; putative signal transduction protein 269449..270708 Pseudomonas putida F1 5195327 YP_001265589.1 CDS Pput_0231 NC_009512.1 270811 271839 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(270811..271839) Pseudomonas putida F1 5194706 YP_001265590.1 CDS Pput_0232 NC_009512.1 271939 273123 R PFAM: fatty acid desaturase; fatty acid desaturase complement(271939..273123) Pseudomonas putida F1 5194707 YP_001265591.1 CDS Pput_0233 NC_009512.1 273270 275165 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 273270..275165 Pseudomonas putida F1 5194198 YP_001265592.1 CDS Pput_0234 NC_009512.1 275193 275837 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(275193..275837) Pseudomonas putida F1 5194199 YP_001265593.1 CDS Pput_0235 NC_009512.1 275827 276936 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(275827..276936) Pseudomonas putida F1 5193872 YP_001265594.1 CDS Pput_0236 NC_009512.1 276938 277738 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(276938..277738) Pseudomonas putida F1 5190552 YP_001265595.1 CDS Pput_0237 NC_009512.1 277731 279116 R coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein complement(277731..279116) Pseudomonas putida F1 5190553 YP_001265596.1 CDS Pput_0238 NC_009512.1 279116 280297 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase complement(279116..280297) Pseudomonas putida F1 5191063 YP_001265597.1 CDS Pput_0239 NC_009512.1 280439 281680 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase complement(280439..281680) Pseudomonas putida F1 5191064 YP_001265598.1 CDS Pput_0240 NC_009512.1 281998 282756 R PFAM: ABC transporter related; SMART: AAA ATPase; putative amino-acid ABC transporter ATP-binding protein YecC complement(281998..282756) Pseudomonas putida F1 5192215 YP_001265599.1 CDS Pput_0241 NC_009512.1 282759 283427 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(282759..283427) Pseudomonas putida F1 5192216 YP_001265600.1 CDS Pput_0242 NC_009512.1 283424 284218 R PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; cystine transporter subunit complement(283424..284218) Pseudomonas putida F1 5193024 YP_001265601.1 CDS Pput_0243 NC_009512.1 284526 285458 D Serine O-acetyltransferase 284526..285458 Pseudomonas putida F1 5193025 YP_001265602.1 CDS Pput_0244 NC_009512.1 285729 287732 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 285729..287732 Pseudomonas putida F1 5193315 YP_001265603.1 CDS tauD NC_009512.1 287856 288731 R catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase complement(287856..288731) Pseudomonas putida F1 5193316 YP_001265604.1 CDS Pput_0246 NC_009512.1 288738 289577 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(288738..289577) Pseudomonas putida F1 5194389 YP_001265605.1 CDS tauB NC_009512.1 289574 290362 R Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit complement(289574..290362) Pseudomonas putida F1 5194390 YP_001265606.1 CDS Pput_0248 NC_009512.1 290376 291347 R TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like; SMART: extracellular solute-binding protein, family 3; taurine ABC transporter periplasmic binding protein complement(290376..291347) Pseudomonas putida F1 5193554 YP_001265607.1 CDS Pput_0249 NC_009512.1 291866 293206 D PFAM: outer membrane porin; outer membrane porin 291866..293206 Pseudomonas putida F1 5193555 YP_001265608.1 CDS Pput_0250 NC_009512.1 293372 294010 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxidase 293372..294010 Pseudomonas putida F1 5190631 YP_001265609.1 CDS Pput_0251 NC_009512.1 294229 294822 D PFAM: NADPH-dependent FMN reductase; NAD(P)H-dependent FMN reductase 294229..294822 Pseudomonas putida F1 5190632 YP_001265610.1 CDS Pput_0252 NC_009512.1 294908 295873 D TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 294908..295873 Pseudomonas putida F1 5192671 YP_001265611.1 CDS Pput_0253 NC_009512.1 295933 297081 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 295933..297081 Pseudomonas putida F1 5192672 YP_001265612.1 CDS Pput_0254 NC_009512.1 297092 297889 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 297092..297889 Pseudomonas putida F1 5191602 YP_001265613.1 CDS ssuB NC_009512.1 297886 298698 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 297886..298698 Pseudomonas putida F1 5191603 YP_001265614.1 CDS Pput_0256 NC_009512.1 298726 298941 D PFAM: TOBE domain protein; TOBE domain-containing protein 298726..298941 Pseudomonas putida F1 5190689 YP_001265615.1 CDS Pput_0257 NC_009512.1 299084 299716 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(299084..299716) Pseudomonas putida F1 5191952 YP_001265616.1 CDS Pput_0258 NC_009512.1 299716 301308 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(299716..301308) Pseudomonas putida F1 5191953 YP_001265617.1 CDS Pput_0259 NC_009512.1 301447 301830 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(301447..301830) Pseudomonas putida F1 5191381 YP_001265618.1 CDS Pput_0260 NC_009512.1 301830 304154 R PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; RNA-binding S1 domain-containing protein complement(301830..304154) Pseudomonas putida F1 5191382 YP_001265619.1 CDS ompR NC_009512.1 304372 305112 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 304372..305112 Pseudomonas putida F1 5191434 YP_001265620.1 CDS Pput_0262 NC_009512.1 305126 306439 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 305126..306439 Pseudomonas putida F1 5191435 YP_001265621.1 CDS Pput_0263 NC_009512.1 306537 307442 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; alpha-L-glutamate ligase complement(306537..307442) Pseudomonas putida F1 5193639 YP_001265622.1 CDS Pput_0264 NC_009512.1 307439 307978 R PFAM: protein of unknown function DUF785; hypothetical protein complement(307439..307978) Pseudomonas putida F1 5193640 YP_001265623.1 CDS Pput_0265 NC_009512.1 308031 308432 D PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 308031..308432 Pseudomonas putida F1 5190213 YP_001265624.1 CDS Pput_0266 NC_009512.1 308460 309254 R PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like protein complement(308460..309254) Pseudomonas putida F1 5190214 YP_001265625.1 CDS hslO NC_009512.1 309375 310274 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 309375..310274 Pseudomonas putida F1 5195565 YP_001265626.1 CDS Pput_0268 NC_009512.1 310454 311995 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 310454..311995 Pseudomonas putida F1 5195566 YP_001265627.1 CDS Pput_0269 NC_009512.1 312277 312717 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 312277..312717 Pseudomonas putida F1 5192375 YP_001265628.1 CDS Pput_0270 NC_009512.1 312774 313256 R PFAM: 17 kDa surface antigen; 17 kDa surface antigen complement(312774..313256) Pseudomonas putida F1 5192376 YP_001265629.1 CDS Pput_0271 NC_009512.1 313453 315798 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit complement(313453..315798) Pseudomonas putida F1 5193878 YP_001265630.1 CDS Pput_0272 NC_009512.1 315804 316634 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD complement(315804..316634) Pseudomonas putida F1 5193879 YP_001265631.1 CDS Pput_0273 NC_009512.1 316810 317250 D PFAM: Peptidoglycan-binding LysM; transport-associated; LysM domain/BON superfamily protein 316810..317250 Pseudomonas putida F1 5190294 YP_001265632.1 CDS Pput_0274 NC_009512.1 317362 318024 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(317362..318024) Pseudomonas putida F1 5190295 YP_001265633.1 CDS nudE NC_009512.1 318089 318655 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 318089..318655 Pseudomonas putida F1 5192813 YP_001265634.1 CDS Pput_0276 NC_009512.1 318652 319470 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase 318652..319470 Pseudomonas putida F1 5192814 YP_001265635.1 CDS Pput_0277 NC_009512.1 319617 320072 R TIGRFAM: thioesterase domain, putative; thioesterase domain-containing protein complement(319617..320072) Pseudomonas putida F1 5193109 YP_001265636.1 CDS Pput_0278 NC_009512.1 320072 321478 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator complement(320072..321478) Pseudomonas putida F1 5191218 YP_001265637.1 CDS Pput_0279 NC_009512.1 321475 323289 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(321475..323289) Pseudomonas putida F1 5191219 YP_001265638.1 CDS Pput_0280 NC_009512.1 323332 323877 R TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(323332..323877) Pseudomonas putida F1 5191183 YP_001265639.1 CDS Pput_0281 NC_009512.1 324156 325262 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 324156..325262 Pseudomonas putida F1 5191184 YP_001265640.1 CDS Pput_0282 NC_009512.1 325457 325654 D hypothetical protein 325457..325654 Pseudomonas putida F1 5190458 YP_001265641.1 CDS Pput_0283 NC_009512.1 325721 327790 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(325721..327790) Pseudomonas putida F1 5190459 YP_001265642.1 CDS Pput_0284 NC_009512.1 328265 329584 D PFAM: outer membrane porin; outer membrane porin 328265..329584 Pseudomonas putida F1 5191888 YP_001265643.1 CDS Pput_0285 NC_009512.1 329735 331405 R PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase complement(329735..331405) Pseudomonas putida F1 5191889 YP_001265644.1 CDS Pput_0286 NC_009512.1 331651 333018 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(331651..333018) Pseudomonas putida F1 5190826 YP_001265645.1 CDS Pput_0287 NC_009512.1 333020 333739 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(333020..333739) Pseudomonas putida F1 5190827 YP_001265646.1 CDS Pput_0288 NC_009512.1 333880 336177 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 333880..336177 Pseudomonas putida F1 5193807 YP_001265647.1 CDS Pput_0289 NC_009512.1 336328 336534 R hypothetical protein complement(336328..336534) Pseudomonas putida F1 5193808 YP_001265648.1 CDS Pput_0290 NC_009512.1 336593 337069 D hypothetical protein 336593..337069 Pseudomonas putida F1 5191216 YP_001265649.1 CDS Pput_0291 NC_009512.1 337111 337584 D SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 337111..337584 Pseudomonas putida F1 5191217 YP_001265650.1 CDS Pput_0292 NC_009512.1 338005 338220 D PFAM: protein of unknown function DUF891; hypothetical protein 338005..338220 Pseudomonas putida F1 5194839 YP_001265651.1 CDS Pput_0293 NC_009512.1 338217 338540 R hypothetical protein complement(338217..338540) Pseudomonas putida F1 5194840 YP_001265652.1 CDS Pput_0294 NC_009512.1 339008 339256 R hypothetical protein complement(339008..339256) Pseudomonas putida F1 5193904 YP_001265653.1 CDS Pput_0295 NC_009512.1 339782 340072 D hypothetical protein 339782..340072 Pseudomonas putida F1 5194197 YP_001265654.1 CDS Pput_0297 NC_009512.1 340427 341632 R hypothetical protein complement(340427..341632) Pseudomonas putida F1 5195296 YP_001265655.1 CDS Pput_0298 NC_009512.1 341744 342433 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(341744..342433) Pseudomonas putida F1 5191873 YP_001265656.1 CDS Pput_0299 NC_009512.1 342433 343125 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(342433..343125) Pseudomonas putida F1 5190219 YP_001265657.1 CDS Pput_0300 NC_009512.1 343180 343932 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(343180..343932) Pseudomonas putida F1 5191244 YP_001265658.1 CDS Pput_0301 NC_009512.1 343944 344717 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(343944..344717) Pseudomonas putida F1 5191245 YP_001265659.1 CDS Pput_0302 NC_009512.1 345349 346734 D TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; GABA permease 345349..346734 Pseudomonas putida F1 5190625 YP_001265660.1 CDS Pput_0303 NC_009512.1 346938 347381 R hypothetical protein complement(346938..347381) Pseudomonas putida F1 5190626 YP_001265661.1 CDS Pput_0304 NC_009512.1 347569 348549 R PFAM: protein of unknown function DUF344; hypothetical protein complement(347569..348549) Pseudomonas putida F1 5191385 YP_001265662.1 CDS Pput_0305 NC_009512.1 348886 349158 R PFAM: Fe(II) trafficking protein YggX; hypothetical protein complement(348886..349158) Pseudomonas putida F1 5195297 YP_001265663.1 CDS Pput_0306 NC_009512.1 349155 350222 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase complement(349155..350222) Pseudomonas putida F1 5191422 YP_001265664.1 CDS Pput_0307 NC_009512.1 350219 352465 R PFAM: AsmA family protein; AsmA family protein complement(350219..352465) Pseudomonas putida F1 5191423 YP_001265665.1 CDS Pput_0308 NC_009512.1 352733 354394 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 352733..354394 Pseudomonas putida F1 5191781 YP_001265666.1 CDS hisB NC_009512.1 354625 355257 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 354625..355257 Pseudomonas putida F1 5191782 YP_001265667.1 CDS hisH NC_009512.1 355258 355896 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 355258..355896 Pseudomonas putida F1 5193964 YP_001265668.1 CDS Pput_0311 NC_009512.1 355897 356157 D hypothetical protein 355897..356157 Pseudomonas putida F1 5193965 YP_001265669.1 CDS Pput_0312 NC_009512.1 356185 356922 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 356185..356922 Pseudomonas putida F1 5195553 YP_001265670.1 CDS Pput_0313 NC_009512.1 356933 357703 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 356933..357703 Pseudomonas putida F1 5195554 YP_001265671.1 CDS Pput_0314 NC_009512.1 357842 359020 R TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(357842..359020) Pseudomonas putida F1 5194744 YP_001265672.1 CDS Pput_0315 NC_009512.1 359017 359862 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(359017..359862) Pseudomonas putida F1 5194745 YP_001265673.1 CDS Pput_0316 NC_009512.1 359947 360894 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(359947..360894) Pseudomonas putida F1 5191624 YP_001265674.1 CDS Pput_0317 NC_009512.1 361347 362723 D TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 361347..362723 Pseudomonas putida F1 5191625 YP_001265675.1 CDS Pput_0318 NC_009512.1 363225 364331 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 363225..364331 Pseudomonas putida F1 5191817 YP_001265676.1 CDS Pput_0319 NC_009512.1 364453 364710 R hypothetical protein complement(364453..364710) Pseudomonas putida F1 5191818 YP_001265677.1 CDS Pput_0320 NC_009512.1 365049 366746 D PFAM: Ricin B lectin; Ricin B lectin 365049..366746 Pseudomonas putida F1 5194223 YP_001265678.1 CDS Pput_0321 NC_009512.1 366791 367261 R hypothetical protein complement(366791..367261) Pseudomonas putida F1 5195107 YP_001265679.1 CDS Pput_0322 NC_009512.1 367272 368237 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(367272..368237) Pseudomonas putida F1 5195108 YP_001265680.1 CDS Pput_0323 NC_009512.1 368408 369292 R PFAM: protein of unknown function DUF849; hypothetical protein complement(368408..369292) Pseudomonas putida F1 5190379 YP_001265681.1 CDS Pput_0324 NC_009512.1 369416 370360 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(369416..370360) Pseudomonas putida F1 5190380 YP_001265682.1 CDS Pput_0325 NC_009512.1 370505 371452 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 370505..371452 Pseudomonas putida F1 5191508 YP_001265683.1 CDS Pput_0326 NC_009512.1 371456 372073 R hypothetical protein complement(371456..372073) Pseudomonas putida F1 5191509 YP_001265684.1 CDS Pput_0327 NC_009512.1 372145 372837 R hypothetical protein complement(372145..372837) Pseudomonas putida F1 5195483 YP_001265685.1 CDS Pput_0328 NC_009512.1 372976 373392 R PFAM: protein of unknown function DUF1311; hypothetical protein complement(372976..373392) Pseudomonas putida F1 5195484 YP_001265686.1 CDS Pput_0329 NC_009512.1 373678 374655 D PFAM: peptidase M19, renal dipeptidase; membrane dipeptidase 373678..374655 Pseudomonas putida F1 5195489 YP_001265687.1 CDS Pput_0330 NC_009512.1 374732 375262 D hypothetical protein 374732..375262 Pseudomonas putida F1 5195490 YP_001265688.1 CDS Pput_0331 NC_009512.1 375278 377338 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase 375278..377338 Pseudomonas putida F1 5191364 YP_001265689.1 CDS Pput_0332 NC_009512.1 377517 379469 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 377517..379469 Pseudomonas putida F1 5191365 YP_001265690.1 CDS Pput_0333 NC_009512.1 379469 380701 D PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; electron transfer flavoprotein subunit alpha-like protein 379469..380701 Pseudomonas putida F1 5190882 YP_001265691.1 CDS Pput_0334 NC_009512.1 380712 381482 D PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; electron transfer flavoprotein subunit alpha/beta-like protein 380712..381482 Pseudomonas putida F1 5190883 YP_001265692.1 CDS Pput_0335 NC_009512.1 382083 382910 D hypothetical protein 382083..382910 Pseudomonas putida F1 5191020 YP_001265693.1 CDS Pput_0336 NC_009512.1 382991 384283 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(382991..384283) Pseudomonas putida F1 5191021 YP_001265694.1 CDS Pput_0337 NC_009512.1 384579 385679 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 384579..385679 Pseudomonas putida F1 5191554 YP_001265695.1 CDS Pput_0338 NC_009512.1 385773 386495 D hypothetical protein 385773..386495 Pseudomonas putida F1 5191555 YP_001265696.1 CDS Pput_0339 NC_009512.1 386498 388123 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(386498..388123) Pseudomonas putida F1 5190931 YP_001265697.1 CDS Pput_0340 NC_009512.1 388390 388620 D hypothetical protein 388390..388620 Pseudomonas putida F1 5190932 YP_001265698.1 CDS Pput_0341 NC_009512.1 388617 388919 D PFAM: protein of unknown function DUF710; hypothetical protein 388617..388919 Pseudomonas putida F1 5193300 YP_001265699.1 CDS Pput_0342 NC_009512.1 389241 391178 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 389241..391178 Pseudomonas putida F1 5193881 YP_001265700.1 CDS Pput_0343 NC_009512.1 391317 392357 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; threonine aldolase complement(391317..392357) Pseudomonas putida F1 5193882 YP_001265701.1 CDS Pput_0344 NC_009512.1 392682 393935 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 392682..393935 Pseudomonas putida F1 5193606 YP_001265702.1 CDS Pput_0345 NC_009512.1 393951 395201 D TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta 393951..395201 Pseudomonas putida F1 5193607 YP_001265703.1 CDS Pput_0346 NC_009512.1 395216 395551 D TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 395216..395551 Pseudomonas putida F1 5190937 YP_001265704.1 CDS Pput_0347 NC_009512.1 395548 398562 D TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; sarcosine oxidase subunit alpha 395548..398562 Pseudomonas putida F1 5190938 YP_001265705.1 CDS Pput_0348 NC_009512.1 398733 399365 D TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 398733..399365 Pseudomonas putida F1 5191803 YP_001265706.1 CDS Pput_0349 NC_009512.1 399377 400234 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 399377..400234 Pseudomonas putida F1 5191804 YP_001265707.1 CDS Pput_0350 NC_009512.1 400536 401735 D TIGRFAM: Formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; formaldehyde dehydrogenase 400536..401735 Pseudomonas putida F1 5194960 YP_001265708.1 CDS Pput_0351 NC_009512.1 401894 402682 R hypothetical protein complement(401894..402682) Pseudomonas putida F1 5194961 YP_001265709.1 CDS Pput_0352 NC_009512.1 402883 403458 D hypothetical protein 402883..403458 Pseudomonas putida F1 5193974 YP_001265710.1 CDS Pput_0353 NC_009512.1 403746 404732 R hypothetical protein complement(403746..404732) Pseudomonas putida F1 5193975 YP_001265711.1 CDS Pput_0354 NC_009512.1 405491 406081 D hypothetical protein 405491..406081 Pseudomonas putida F1 5191035 YP_001265712.1 CDS Pput_0355 NC_009512.1 406167 407054 R PFAM: phospholipid/glycerol acyltransferase; putative acyltransferase complement(406167..407054) Pseudomonas putida F1 5191036 YP_001265713.1 CDS Pput_0356 NC_009512.1 407236 407736 D PFAM: protein of unknown function DUF785; hypothetical protein 407236..407736 Pseudomonas putida F1 5191432 YP_001265714.1 CDS Pput_0357 NC_009512.1 407884 408564 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 407884..408564 Pseudomonas putida F1 5191433 YP_001265715.1 CDS Pput_0358 NC_009512.1 408564 410000 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 408564..410000 Pseudomonas putida F1 5193825 YP_001265716.1 CDS Pput_0359 NC_009512.1 410108 411436 D PFAM: Inner membrane CreD family protein; hypothetical protein 410108..411436 Pseudomonas putida F1 5193826 YP_001265717.1 CDS Pput_0360 NC_009512.1 411601 412224 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(411601..412224) Pseudomonas putida F1 5191043 YP_001265718.1 CDS Pput_0361 NC_009512.1 412228 412950 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(412228..412950) Pseudomonas putida F1 5191044 YP_001265719.1 CDS Pput_0362 NC_009512.1 413065 415845 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(413065..415845) Pseudomonas putida F1 5195577 YP_001265720.1 CDS Pput_0363 NC_009512.1 416167 417798 R TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase complement(416167..417798) Pseudomonas putida F1 5190864 YP_001265721.1 CDS aceE NC_009512.1 417812 420457 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(417812..420457) Pseudomonas putida F1 5190865 YP_001265722.1 CDS Pput_0365 NC_009512.1 420841 423774 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 420841..423774 Pseudomonas putida F1 5192943 YP_001265723.1 CDS Pput_0366 NC_009512.1 424009 425058 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase II 424009..425058 Pseudomonas putida F1 5192944 YP_001265724.1 CDS Pput_0367 NC_009512.1 425059 426117 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase I 425059..426117 Pseudomonas putida F1 5192956 YP_001265725.1 CDS Pput_0368 NC_009512.1 426117 427241 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 426117..427241 Pseudomonas putida F1 5192957 YP_001265726.1 CDS Pput_0369 NC_009512.1 427238 428044 D PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 427238..428044 Pseudomonas putida F1 5193929 YP_001265727.1 CDS Pput_0370 NC_009512.1 428044 428778 D PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 428044..428778 Pseudomonas putida F1 5193930 YP_001265728.1 CDS Pput_0371 NC_009512.1 428775 429527 D PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 428775..429527 Pseudomonas putida F1 5192594 YP_001265729.1 CDS Pput_0372 NC_009512.1 429527 430969 D hypothetical protein 429527..430969 Pseudomonas putida F1 5192595 YP_001265730.1 CDS Pput_0373 NC_009512.1 430987 433773 R hypothetical protein complement(430987..433773) Pseudomonas putida F1 5192349 YP_001265731.1 CDS Pput_0374 NC_009512.1 433841 434026 R hypothetical protein complement(433841..434026) Pseudomonas putida F1 5192350 YP_001265732.1 CDS Pput_0375 NC_009512.1 434023 435135 R PFAM: PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(434023..435135) Pseudomonas putida F1 5194455 YP_001265733.1 CDS Pput_0376 NC_009512.1 435192 437624 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(435192..437624) Pseudomonas putida F1 5194456 YP_001265734.1 CDS Pput_0377 NC_009512.1 437878 438834 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(437878..438834) Pseudomonas putida F1 5191685 YP_001265735.1 CDS Pput_0378 NC_009512.1 438831 439349 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor complement(438831..439349) Pseudomonas putida F1 5191686 YP_001265736.1 CDS Pput_0379 NC_009512.1 439553 440263 R TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(439553..440263) Pseudomonas putida F1 5192768 YP_001265737.1 CDS Pput_0380 NC_009512.1 440260 442197 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; hypothetical protein complement(440260..442197) Pseudomonas putida F1 5192769 YP_001265738.1 CDS Pput_0381 NC_009512.1 442314 442859 D PFAM: response regulator receiver; response regulator receiver protein 442314..442859 Pseudomonas putida F1 5190598 YP_001265739.1 CDS Pput_0382 NC_009512.1 442903 445080 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(442903..445080) Pseudomonas putida F1 5190599 YP_001265740.1 CDS Pput_0383 NC_009512.1 445530 446048 D PFAM: amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 445530..446048 Pseudomonas putida F1 5195180 YP_001265741.1 CDS Pput_0384 NC_009512.1 446377 447264 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; transporter DMT superfamily protein complement(446377..447264) Pseudomonas putida F1 5193723 YP_001265742.1 CDS Pput_0385 NC_009512.1 447329 448303 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(447329..448303) Pseudomonas putida F1 5193724 YP_001265743.1 CDS Pput_0386 NC_009512.1 448462 449226 R TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; ModE family transcriptional regulator complement(448462..449226) Pseudomonas putida F1 5195527 YP_001265744.1 CDS Pput_0387 NC_009512.1 449276 450007 R amidophosphoribosyltransferase-like protein complement(449276..450007) Pseudomonas putida F1 5195528 YP_001265745.1 CDS Pput_0388 NC_009512.1 450097 451155 D TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 450097..451155 Pseudomonas putida F1 5195060 YP_001265746.1 CDS Pput_0389 NC_009512.1 451157 452329 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 451157..452329 Pseudomonas putida F1 5195061 YP_001265747.1 CDS Pput_0390 NC_009512.1 452322 453053 D PFAM: alpha/beta hydrolase fold; carboxylesterase 452322..453053 Pseudomonas putida F1 5194411 YP_001265748.1 CDS Pput_0391 NC_009512.1 453034 453864 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; biotin biosynthesis protein BioC 453034..453864 Pseudomonas putida F1 5194412 YP_001265749.1 CDS bioD NC_009512.1 453875 454555 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 453875..454555 Pseudomonas putida F1 5194192 YP_001265750.1 CDS Pput_0393 NC_009512.1 454767 455063 D hypothetical protein 454767..455063 Pseudomonas putida F1 5194193 YP_001265751.1 CDS Pput_0394 NC_009512.1 455352 457157 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 455352..457157 Pseudomonas putida F1 5194670 YP_001265752.1 CDS Pput_0395 NC_009512.1 457459 458736 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 457459..458736 Pseudomonas putida F1 5194671 YP_001265753.1 CDS Pput_0396 NC_009512.1 458861 460639 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 458861..460639 Pseudomonas putida F1 5194014 YP_001265754.1 CDS Pput_0397 NC_009512.1 461003 461926 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(461003..461926) Pseudomonas putida F1 5194015 YP_001265755.1 CDS Pput_0398 NC_009512.1 462138 463418 D PFAM: aminotransferase class-III; class III aminotransferase 462138..463418 Pseudomonas putida F1 5192648 YP_001265756.1 CDS Pput_0399 NC_009512.1 463566 463724 D PFAM: protein of unknown function UPF0057; hypothetical protein 463566..463724 Pseudomonas putida F1 5192649 YP_001265757.1 CDS Pput_0400 NC_009512.1 463788 465611 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase complement(463788..465611) Pseudomonas putida F1 5193426 YP_001265758.1 CDS Pput_0401 NC_009512.1 465577 466707 R TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE complement(465577..466707) Pseudomonas putida F1 5193427 YP_001265759.1 CDS Pput_0402 NC_009512.1 466709 466984 R with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD complement(466709..466984) Pseudomonas putida F1 5193438 YP_001265760.1 CDS Pput_0403 NC_009512.1 466981 467736 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(466981..467736) Pseudomonas putida F1 5193439 YP_001265761.1 CDS Pput_0404 NC_009512.1 467899 468810 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(467899..468810) Pseudomonas putida F1 5191220 YP_001265762.1 CDS Pput_0405 NC_009512.1 469120 471549 R TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; coenzyme PQQ biosynthesis protein PqqF complement(469120..471549) Pseudomonas putida F1 5194722 YP_001265763.1 CDS Pput_0406 NC_009512.1 471561 472355 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(471561..472355) Pseudomonas putida F1 5194723 YP_001265764.1 CDS Pput_0407 NC_009512.1 472370 474052 R PFAM: amine oxidase; amine oxidase complement(472370..474052) Pseudomonas putida F1 5195255 YP_001265765.1 CDS Pput_0408 NC_009512.1 474365 474826 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(474365..474826) Pseudomonas putida F1 5195256 YP_001265766.1 CDS Pput_0409 NC_009512.1 475014 475568 D hypothetical protein 475014..475568 Pseudomonas putida F1 5195068 YP_001265767.1 CDS Pput_0410 NC_009512.1 475912 476193 R hypothetical protein complement(475912..476193) Pseudomonas putida F1 5195069 YP_001265768.1 CDS Pput_0411 NC_009512.1 476510 477103 D hypothetical protein 476510..477103 Pseudomonas putida F1 5194892 YP_001265769.1 CDS Pput_0412 NC_009512.1 477112 477678 D PFAM: protein of unknown function DUF955; hypothetical protein 477112..477678 Pseudomonas putida F1 5194893 YP_001265770.1 CDS Pput_0413 NC_009512.1 477665 478732 D hypothetical protein 477665..478732 Pseudomonas putida F1 5195324 YP_001265771.1 CDS Pput_0414 NC_009512.1 478721 479329 R hypothetical protein complement(478721..479329) Pseudomonas putida F1 5195325 YP_001265772.1 CDS Pput_0415 NC_009512.1 479578 480273 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(479578..480273) Pseudomonas putida F1 5194259 YP_001265773.1 CDS Pput_0419 NC_009512.1 481598 481834 R PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(481598..481834) Pseudomonas putida F1 5194295 YP_001265774.1 CDS Pput_0420 NC_009512.1 482132 485875 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(482132..485875) Pseudomonas putida F1 5194819 YP_001265775.1 CDS Pput_0421 NC_009512.1 486003 487853 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(486003..487853) Pseudomonas putida F1 5194712 YP_001265776.1 CDS dnaG NC_009512.1 487921 489903 R synthesizes RNA primers at the replication forks; DNA primase complement(487921..489903) Pseudomonas putida F1 5194713 YP_001265777.1 CDS rpsU NC_009512.1 490208 490423 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(490208..490423) Pseudomonas putida F1 5194205 YP_001265778.1 CDS Pput_0424 NC_009512.1 490628 491653 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 490628..491653 Pseudomonas putida F1 5194206 YP_001265779.1 CDS Pput_0425 NC_009512.1 491671 492240 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(491671..492240) Pseudomonas putida F1 5194572 YP_001265780.1 CDS Pput_0426 NC_009512.1 492315 492671 D TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 492315..492671 Pseudomonas putida F1 5194573 YP_001265781.1 CDS Pput_0427 NC_009512.1 492662 493171 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 492662..493171 Pseudomonas putida F1 5194957 YP_001265782.1 CDS cca NC_009512.1 493393 494499 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(493393..494499) Pseudomonas putida F1 5190866 YP_001265783.1 CDS Pput_0429 NC_009512.1 494555 496123 R PFAM: SpoVR family protein; SpoVR family protein complement(494555..496123) Pseudomonas putida F1 5190867 YP_001265784.1 CDS Pput_0430 NC_009512.1 496120 497391 R PFAM: protein of unknown function DUF444; hypothetical protein complement(496120..497391) Pseudomonas putida F1 5191290 YP_001265785.1 CDS Pput_0431 NC_009512.1 497547 499469 R PFAM: PrkA serine kinase; PrkA AAA domain protein; putative serine protein kinase PrkA complement(497547..499469) Pseudomonas putida F1 5191291 YP_001265786.1 CDS glpE NC_009512.1 499752 500084 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(499752..500084) Pseudomonas putida F1 5190966 YP_001265787.1 CDS apaH NC_009512.1 500099 500965 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(500099..500965) Pseudomonas putida F1 5190967 YP_001265788.1 CDS apaG NC_009512.1 500965 501345 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(500965..501345) Pseudomonas putida F1 5192478 YP_001265789.1 CDS ksgA NC_009512.1 501543 502346 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(501543..502346) Pseudomonas putida F1 5192479 YP_001265790.1 CDS pdxA NC_009512.1 502343 503332 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(502343..503332) Pseudomonas putida F1 5192704 YP_001265791.1 CDS Pput_0437 NC_009512.1 503329 504648 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain; SurA domain-containing protein complement(503329..504648) Pseudomonas putida F1 5192705 YP_001265792.1 CDS Pput_0438 NC_009512.1 504629 507436 R PFAM: OstA family protein; Organic solvent tolerance protein; organic solvent tolerance protein complement(504629..507436) Pseudomonas putida F1 5193833 YP_001265793.1 CDS Pput_0439 NC_009512.1 507567 508586 D PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 507567..508586 Pseudomonas putida F1 5193834 YP_001265794.1 CDS Pput_0440 NC_009512.1 508583 509254 D PFAM: Nucleotidyl transferase; nucleotidyl transferase 508583..509254 Pseudomonas putida F1 5192405 YP_001265795.1 CDS Pput_0441 NC_009512.1 509256 510023 D PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 509256..510023 Pseudomonas putida F1 5192406 YP_001265796.1 CDS Pput_0442 NC_009512.1 510051 511049 R hypothetical protein complement(510051..511049) Pseudomonas putida F1 5193307 YP_001265797.1 CDS Pput_0443 NC_009512.1 511145 513532 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein, family 3; PAS/PAC sensor signal transduction histidine kinase 511145..513532 Pseudomonas putida F1 5193308 YP_001265798.1 CDS Pput_0444 NC_009512.1 513543 514172 D PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 513543..514172 Pseudomonas putida F1 5193727 YP_001265799.1 CDS Pput_0445 NC_009512.1 514468 515592 D TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 514468..515592 Pseudomonas putida F1 5193728 YP_001265800.1 CDS Pput_0446 NC_009512.1 515633 516667 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 515633..516667 Pseudomonas putida F1 5192269 YP_001265801.1 CDS Pput_0447 NC_009512.1 516728 517975 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 516728..517975 Pseudomonas putida F1 5192270 YP_001265802.1 CDS Pput_0448 NC_009512.1 517986 518813 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 517986..518813 Pseudomonas putida F1 5194143 YP_001265803.1 CDS Pput_0449 NC_009512.1 518963 519637 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 518963..519637 Pseudomonas putida F1 5195479 YP_001265804.1 CDS Pput_0450 NC_009512.1 519634 520452 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 519634..520452 Pseudomonas putida F1 5195480 YP_001265805.1 CDS Pput_0451 NC_009512.1 520522 522003 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 520522..522003 Pseudomonas putida F1 5194122 YP_001265806.1 CDS Pput_0452 NC_009512.1 522250 524139 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: lipolytic enzyme, G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter complement(522250..524139) Pseudomonas putida F1 5194123 YP_001265807.1 CDS Pput_0453 NC_009512.1 524507 525100 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 524507..525100 Pseudomonas putida F1 5194311 YP_001265808.1 CDS trpD NC_009512.1 525110 526159 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 525110..526159 Pseudomonas putida F1 5194312 YP_001265809.1 CDS trpC NC_009512.1 526156 526989 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 526156..526989 Pseudomonas putida F1 5194255 YP_001265810.1 CDS Pput_0456 NC_009512.1 527136 527840 D hypothetical protein 527136..527840 Pseudomonas putida F1 5194256 YP_001265811.1 CDS Pput_0457 NC_009512.1 527837 528508 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(527837..528508) Pseudomonas putida F1 5193695 YP_001265812.1 CDS Pput_0458 NC_009512.1 528673 529095 D PFAM: OsmC family protein; OsmC family protein 528673..529095 Pseudomonas putida F1 5193696 YP_001265813.1 CDS Pput_0459 NC_009512.1 529172 530212 R hypothetical protein complement(529172..530212) Pseudomonas putida F1 5190427 YP_001265814.1 CDS Pput_0460 NC_009512.1 530223 530870 R ubiquinone biosynthesis protein COQ7-like protein complement(530223..530870) Pseudomonas putida F1 5190428 YP_001265815.1 CDS Pput_0461 NC_009512.1 530936 531274 R PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein complement(530936..531274) Pseudomonas putida F1 5191106 YP_001265816.1 CDS Pput_0462 NC_009512.1 531338 532120 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(531338..532120) Pseudomonas putida F1 5191107 YP_001265817.1 CDS Pput_0463 NC_009512.1 532188 533144 R PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(532188..533144) Pseudomonas putida F1 5192169 YP_001265818.1 CDS Pput_0464 NC_009512.1 533173 533598 R PFAM: conserved hypothetical protein 701; hypothetical protein complement(533173..533598) Pseudomonas putida F1 5192170 YP_001265819.1 CDS argC NC_009512.1 533741 534775 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 533741..534775 Pseudomonas putida F1 5191886 YP_001265820.1 CDS Pput_0466 NC_009512.1 534875 535273 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 534875..535273 Pseudomonas putida F1 5191887 YP_001265821.1 CDS anmK NC_009512.1 535333 536424 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(535333..536424) Pseudomonas putida F1 5192198 YP_001265822.1 CDS Pput_0468 NC_009512.1 536428 537849 R PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A, N-terminal domain protein; peptidase M23B complement(536428..537849) Pseudomonas putida F1 5192199 YP_001265823.1 CDS Pput_0469 NC_009512.1 538063 539262 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 538063..539262 Pseudomonas putida F1 5192381 YP_001265824.1 CDS Pput_0470 NC_009512.1 545178 546137 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 545178..546137 Pseudomonas putida F1 5192887 YP_001265825.1 CDS Pput_0471 NC_009512.1 546127 546876 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 546127..546876 Pseudomonas putida F1 5193654 YP_001265826.1 CDS Pput_0472 NC_009512.1 546884 547309 D hypothetical protein 546884..547309 Pseudomonas putida F1 5190395 YP_001265827.1 CDS Pput_0473 NC_009512.1 547827 549020 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 547827..549020 Pseudomonas putida F1 5191745 YP_001265828.1 CDS secE NC_009512.1 549195 549563 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 549195..549563 Pseudomonas putida F1 5194424 YP_001265829.1 CDS nusG NC_009512.1 549573 550106 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 549573..550106 Pseudomonas putida F1 5191259 YP_001265830.1 CDS rplK NC_009512.1 550226 550657 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 550226..550657 Pseudomonas putida F1 5190246 YP_001265831.1 CDS rplA NC_009512.1 550657 551352 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 550657..551352 Pseudomonas putida F1 5190247 YP_001265832.1 CDS rplJ NC_009512.1 551463 552050 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 551463..552050 Pseudomonas putida F1 5193278 YP_001265833.1 CDS rplL NC_009512.1 552127 552492 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 552127..552492 Pseudomonas putida F1 5193279 YP_001265834.1 CDS rpoB NC_009512.1 552713 556786 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 552713..556786 Pseudomonas putida F1 5191203 YP_001265835.1 CDS Pput_0481 NC_009512.1 556851 561050 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 556851..561050 Pseudomonas putida F1 5191204 YP_001265836.1 CDS rpsL NC_009512.1 561262 561633 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 561262..561633 Pseudomonas putida F1 5191913 YP_001265837.1 CDS Pput_0483 NC_009512.1 561740 562210 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 561740..562210 Pseudomonas putida F1 5191914 YP_001265838.1 CDS Pput_0484 NC_009512.1 562241 564388 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 562241..564388 Pseudomonas putida F1 5191649 YP_001265839.1 CDS Pput_0485 NC_009512.1 564416 565609 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 564416..565609 Pseudomonas putida F1 5191650 YP_001265840.1 CDS rpsJ NC_009512.1 565751 566062 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 565751..566062 Pseudomonas putida F1 5191312 YP_001265841.1 CDS rplC NC_009512.1 566143 566778 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 566143..566778 Pseudomonas putida F1 5191313 YP_001265842.1 CDS rplD NC_009512.1 566791 567393 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 566791..567393 Pseudomonas putida F1 5193772 YP_001265843.1 CDS rplW NC_009512.1 567390 567689 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 567390..567689 Pseudomonas putida F1 5193773 YP_001265844.1 CDS rplB NC_009512.1 567704 568528 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 567704..568528 Pseudomonas putida F1 5191812 YP_001265845.1 CDS rpsS NC_009512.1 568545 568820 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 568545..568820 Pseudomonas putida F1 5192068 YP_001265846.1 CDS rplV NC_009512.1 568832 569164 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 568832..569164 Pseudomonas putida F1 5192069 YP_001265847.1 CDS rpsC NC_009512.1 569178 569864 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 569178..569864 Pseudomonas putida F1 5193159 YP_001265848.1 CDS rplP NC_009512.1 569877 570290 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 569877..570290 Pseudomonas putida F1 5193160 YP_001265849.1 CDS Pput_0495 NC_009512.1 570290 570481 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 570290..570481 Pseudomonas putida F1 5193711 YP_001265850.1 CDS rpsQ NC_009512.1 570484 570750 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 570484..570750 Pseudomonas putida F1 5193712 YP_001265851.1 CDS rplN NC_009512.1 570774 571142 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 570774..571142 Pseudomonas putida F1 5190794 YP_001265852.1 CDS rplX NC_009512.1 571154 571468 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 571154..571468 Pseudomonas putida F1 5190795 YP_001265853.1 CDS rplE NC_009512.1 571489 572028 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 571489..572028 Pseudomonas putida F1 5193396 YP_001265854.1 CDS rpsN NC_009512.1 572042 572347 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 572042..572347 Pseudomonas putida F1 5193397 YP_001265855.1 CDS rpsH NC_009512.1 572556 572948 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 572556..572948 Pseudomonas putida F1 5190992 YP_001265856.1 CDS rplF NC_009512.1 572961 573494 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 572961..573494 Pseudomonas putida F1 5190993 YP_001265857.1 CDS rplR NC_009512.1 573505 573855 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 573505..573855 Pseudomonas putida F1 5192072 YP_001265858.1 CDS rpsE NC_009512.1 573859 574359 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 573859..574359 Pseudomonas putida F1 5192073 YP_001265859.1 CDS rpmD NC_009512.1 574362 574538 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 574362..574538 Pseudomonas putida F1 5190469 YP_001265860.1 CDS rplO NC_009512.1 574542 574976 D late assembly protein; 50S ribosomal protein L15 574542..574976 Pseudomonas putida F1 5190470 YP_001265861.1 CDS secY NC_009512.1 574977 576308 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 574977..576308 Pseudomonas putida F1 5191691 YP_001265862.1 CDS Pput_0508 NC_009512.1 576286 576453 D PFAM: ribosomal protein L36; 50S ribosomal protein L36 576286..576453 Pseudomonas putida F1 5191692 YP_001265863.1 CDS rpsM NC_009512.1 576585 576941 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 576585..576941 Pseudomonas putida F1 5190838 YP_001265864.1 CDS Pput_0510 NC_009512.1 576960 577349 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 576960..577349 Pseudomonas putida F1 5190839 YP_001265865.1 CDS rpsD NC_009512.1 577365 577985 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 577365..577985 Pseudomonas putida F1 5190543 YP_001265866.1 CDS Pput_0512 NC_009512.1 578008 579009 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 578008..579009 Pseudomonas putida F1 5190344 YP_001265867.1 CDS rplQ NC_009512.1 579052 579438 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 579052..579438 Pseudomonas putida F1 5190345 YP_001265868.1 CDS Pput_0514 NC_009512.1 579611 581050 D PFAM: Catalase domain protein; catalase 579611..581050 Pseudomonas putida F1 5190746 YP_001265869.1 CDS Pput_0515 NC_009512.1 581214 581678 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin 581214..581678 Pseudomonas putida F1 5190747 YP_001265870.1 CDS uvrA NC_009512.1 581751 584585 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(581751..584585) Pseudomonas putida F1 5192866 YP_001265871.1 CDS Pput_0517 NC_009512.1 584715 586109 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 584715..586109 Pseudomonas putida F1 5192867 YP_001265872.1 CDS Pput_0518 NC_009512.1 586119 586664 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 586119..586664 Pseudomonas putida F1 5192304 YP_001265873.1 CDS Pput_0519 NC_009512.1 586755 588137 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(586755..588137) Pseudomonas putida F1 5192305 YP_001265874.1 CDS Pput_0520 NC_009512.1 588327 589124 D PFAM: protein of unknown function DUF81; hypothetical protein 588327..589124 Pseudomonas putida F1 5190842 YP_001265875.1 CDS Pput_0521 NC_009512.1 589146 589907 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 589146..589907 Pseudomonas putida F1 5190843 YP_001265876.1 CDS Pput_0522 NC_009512.1 590055 590645 D PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase Fe4S4 region 590055..590645 Pseudomonas putida F1 5193282 YP_001265877.1 CDS Pput_0523 NC_009512.1 590658 593123 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 590658..593123 Pseudomonas putida F1 5193283 YP_001265878.1 CDS Pput_0524 NC_009512.1 593123 594073 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Formate dehydrogenase, transmembrane; formate dehydrogenase subunit beta 593123..594073 Pseudomonas putida F1 5190178 YP_001265879.1 CDS Pput_0525 NC_009512.1 594070 594726 D TIGRFAM: formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma 594070..594726 Pseudomonas putida F1 5190179 YP_001265880.1 CDS Pput_0526 NC_009512.1 594731 595657 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; formate dehydrogenase accessory protein FdhE 594731..595657 Pseudomonas putida F1 5193330 YP_001265881.1 CDS Pput_0527 NC_009512.1 595797 597224 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 595797..597224 Pseudomonas putida F1 5193331 YP_001265882.1 CDS Pput_0528 NC_009512.1 597221 599143 D TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; Elongation factor SelB, winged helix 2; Elongation factor SelB, winged helix 3; selenocysteine-specific translation elongation factor 597221..599143 Pseudomonas putida F1 5193980 YP_001265883.1 CDS Pput_0529 NC_009512.1 599352 600350 R PFAM: Asparaginase/glutaminase; asparaginase complement(599352..600350) Pseudomonas putida F1 5193981 YP_001265884.1 CDS Pput_0530 NC_009512.1 600414 601856 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein complement(600414..601856) Pseudomonas putida F1 5190226 YP_001265885.1 CDS Pput_0531 NC_009512.1 602035 602844 D Cro/CI family transcriptional regulator 602035..602844 Pseudomonas putida F1 5190227 YP_001265886.1 CDS Pput_0532 NC_009512.1 602856 603296 R hypothetical protein complement(602856..603296) Pseudomonas putida F1 5193776 YP_001265887.1 CDS Pput_0535 NC_009512.1 604911 605795 D PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 604911..605795 Pseudomonas putida F1 5192787 YP_001265888.1 CDS Pput_0536 NC_009512.1 605788 606720 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; NAD-dependent epimerase/dehydratase 605788..606720 Pseudomonas putida F1 5192937 YP_001265889.1 CDS Pput_0537 NC_009512.1 606751 607194 R PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator complement(606751..607194) Pseudomonas putida F1 5192938 YP_001265890.1 CDS Pput_0538 NC_009512.1 607298 608503 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 607298..608503 Pseudomonas putida F1 5191284 YP_001265891.1 CDS Pput_0539 NC_009512.1 608491 609174 R PFAM: OmpW family protein; OmpW family protein complement(608491..609174) Pseudomonas putida F1 5191285 YP_001265892.1 CDS Pput_0540 NC_009512.1 609284 609817 R hypothetical protein complement(609284..609817) Pseudomonas putida F1 5195473 YP_001265893.1 CDS Pput_0541 NC_009512.1 609923 611188 R PFAM: protein of unknown function DUF214; hypothetical protein complement(609923..611188) Pseudomonas putida F1 5195474 YP_001265894.1 CDS Pput_0542 NC_009512.1 611188 611898 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(611188..611898) Pseudomonas putida F1 5193305 YP_001265895.1 CDS Pput_0543 NC_009512.1 611899 612480 R hypothetical protein complement(611899..612480) Pseudomonas putida F1 5193306 YP_001265896.1 CDS Pput_0544 NC_009512.1 612611 612955 D hypothetical protein 612611..612955 Pseudomonas putida F1 5195153 YP_001265897.1 CDS Pput_0545 NC_009512.1 613104 613976 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(613104..613976) Pseudomonas putida F1 5195154 YP_001265898.1 CDS Pput_0546 NC_009512.1 614008 614664 R PFAM: methyltransferase small; Methyltransferase type 12; type 12 methyltransferase complement(614008..614664) Pseudomonas putida F1 5195280 YP_001265899.1 CDS Pput_0547 NC_009512.1 614668 615144 R hypothetical protein complement(614668..615144) Pseudomonas putida F1 5195281 YP_001265900.1 CDS nrdR NC_009512.1 615221 615685 D PFAM: ATP-cone domain protein; transcriptional regulator NrdR 615221..615685 Pseudomonas putida F1 5190180 YP_001265901.1 CDS Pput_0549 NC_009512.1 615688 616818 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 615688..616818 Pseudomonas putida F1 5190181 YP_001265902.1 CDS Pput_0550 NC_009512.1 616861 617526 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 616861..617526 Pseudomonas putida F1 5190871 YP_001265903.1 CDS Pput_0551 NC_009512.1 617545 618636 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 617545..618636 Pseudomonas putida F1 5190872 YP_001265904.1 CDS ribH NC_009512.1 618728 619204 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 618728..619204 Pseudomonas putida F1 5190191 YP_001265905.1 CDS nusB NC_009512.1 619201 619701 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 619201..619701 Pseudomonas putida F1 5190192 YP_001265906.1 CDS Pput_0554 NC_009512.1 619720 620688 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 619720..620688 Pseudomonas putida F1 5190378 YP_001265907.1 CDS Pput_0555 NC_009512.1 620685 621188 D PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 620685..621188 Pseudomonas putida F1 5191360 YP_001265908.1 CDS Pput_0556 NC_009512.1 621205 621948 D hypothetical protein 621205..621948 Pseudomonas putida F1 5191361 YP_001265909.1 CDS ribA NC_009512.1 622130 622747 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 622130..622747 Pseudomonas putida F1 5190578 YP_001265910.1 CDS Pput_0558 NC_009512.1 622744 623163 D hypothetical protein 622744..623163 Pseudomonas putida F1 5190579 YP_001265911.1 CDS Pput_0559 NC_009512.1 623163 623975 D PFAM: periplasmic binding protein; periplasmic binding protein 623163..623975 Pseudomonas putida F1 5192899 YP_001265912.1 CDS Pput_0560 NC_009512.1 623953 625824 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(623953..625824) Pseudomonas putida F1 5192900 YP_001265913.1 CDS Pput_0561 NC_009512.1 626172 628067 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(626172..628067) Pseudomonas putida F1 5192259 YP_001265914.1 CDS Pput_0562 NC_009512.1 628245 629132 R PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(628245..629132) Pseudomonas putida F1 5192260 YP_001265915.1 CDS Pput_0563 NC_009512.1 629129 629371 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(629129..629371) Pseudomonas putida F1 5191488 YP_001265916.1 CDS ribB NC_009512.1 629620 630270 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(629620..630270) Pseudomonas putida F1 5191489 YP_001265917.1 CDS Pput_0565 NC_009512.1 630642 631622 D PFAM: Zeta toxin family protein; zeta toxin family protein 630642..631622 Pseudomonas putida F1 5191486 YP_001265918.1 CDS Pput_0566 NC_009512.1 631644 632537 R PFAM: putative esterase; putative esterase complement(631644..632537) Pseudomonas putida F1 5191487 YP_001265919.1 CDS Pput_0567 NC_009512.1 632638 633966 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(632638..633966) Pseudomonas putida F1 5191755 YP_001265920.1 CDS Pput_0568 NC_009512.1 633966 634658 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(633966..634658) Pseudomonas putida F1 5191756 YP_001265921.1 CDS Pput_0569 NC_009512.1 634840 637014 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 634840..637014 Pseudomonas putida F1 5191930 YP_001265922.1 CDS Pput_0570 NC_009512.1 637191 637655 R PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein complement(637191..637655) Pseudomonas putida F1 5191931 YP_001265923.1 CDS Pput_0571 NC_009512.1 637784 637939 R hypothetical protein complement(637784..637939) Pseudomonas putida F1 5193524 YP_001265924.1 CDS Pput_0572 NC_009512.1 638151 638924 R hypothetical protein complement(638151..638924) Pseudomonas putida F1 5193525 YP_001265925.1 CDS Pput_0573 NC_009512.1 638934 639869 R PFAM: copper resistance B precursor; copper resistance B complement(638934..639869) Pseudomonas putida F1 5193562 YP_001265926.1 CDS Pput_0574 NC_009512.1 640191 642050 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; CopA family copper resistance protein complement(640191..642050) Pseudomonas putida F1 5193563 YP_001265927.1 CDS Pput_0575 NC_009512.1 642327 642482 R hypothetical protein complement(642327..642482) Pseudomonas putida F1 5193880 YP_001265928.1 CDS Pput_0576 NC_009512.1 642990 643691 R hypothetical protein complement(642990..643691) Pseudomonas putida F1 5193962 YP_001265929.1 CDS Pput_0577 NC_009512.1 643878 644405 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(643878..644405) Pseudomonas putida F1 5193963 YP_001265930.1 CDS Pput_0578 NC_009512.1 644498 645313 R PFAM: protein of unknown function DUF980; hypothetical protein complement(644498..645313) Pseudomonas putida F1 5193986 YP_001265931.1 CDS Pput_0579 NC_009512.1 645334 645981 R PFAM: SNARE associated Golgi protein; hypothetical protein complement(645334..645981) Pseudomonas putida F1 5193987 YP_001265932.1 CDS Pput_0580 NC_009512.1 646199 646657 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(646199..646657) Pseudomonas putida F1 5194508 YP_001265933.1 CDS Pput_0581 NC_009512.1 646765 647583 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(646765..647583) Pseudomonas putida F1 5194509 YP_001265934.1 CDS Pput_0582 NC_009512.1 647592 648986 R PFAM: Ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit complement(647592..648986) Pseudomonas putida F1 5194265 YP_001265935.1 CDS Pput_0583 NC_009512.1 649033 650481 R TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; ethanolamine transporter complement(649033..650481) Pseudomonas putida F1 5194266 YP_001265936.1 CDS Pput_0584 NC_009512.1 650709 652229 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(650709..652229) Pseudomonas putida F1 5195491 YP_001265937.1 CDS Pput_0585 NC_009512.1 652484 654499 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 652484..654499 Pseudomonas putida F1 5195492 YP_001265938.1 CDS Pput_0586 NC_009512.1 654566 655915 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 654566..655915 Pseudomonas putida F1 5194283 YP_001265939.1 CDS Pput_0587 NC_009512.1 655912 656541 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; aromatic acid decarboxylase 655912..656541 Pseudomonas putida F1 5194284 YP_001265940.1 CDS Pput_0588 NC_009512.1 656538 656825 D PFAM: protein of unknown function DUF1375; hypothetical protein 656538..656825 Pseudomonas putida F1 5194139 YP_001265941.1 CDS Pput_0589 NC_009512.1 656932 657576 R hypothetical protein complement(656932..657576) Pseudomonas putida F1 5194140 YP_001265942.1 CDS Pput_0590 NC_009512.1 657604 659415 R PFAM: MORN repeat-containing protein; MORN repeat-containing protein complement(657604..659415) Pseudomonas putida F1 5193290 YP_001265943.1 CDS Pput_0591 NC_009512.1 659551 660639 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(659551..660639) Pseudomonas putida F1 5193291 YP_001265944.1 CDS Pput_0592 NC_009512.1 660668 661774 R PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(660668..661774) Pseudomonas putida F1 5190913 YP_001265945.1 CDS Pput_0593 NC_009512.1 661771 662793 R PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region complement(661771..662793) Pseudomonas putida F1 5190914 YP_001265946.1 CDS Pput_0594 NC_009512.1 662827 663804 R PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase complement(662827..663804) Pseudomonas putida F1 5194628 YP_001265947.1 CDS Pput_0595 NC_009512.1 663827 664882 R PFAM: ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase complement(663827..664882) Pseudomonas putida F1 5194629 YP_001265948.1 CDS Pput_0596 NC_009512.1 665166 667019 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 665166..667019 Pseudomonas putida F1 5195323 YP_001265949.1 CDS Pput_0597 NC_009512.1 667213 668568 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(667213..668568) Pseudomonas putida F1 5195235 YP_001265950.1 CDS Pput_0598 NC_009512.1 668586 669047 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(668586..669047) Pseudomonas putida F1 5195236 YP_001265951.1 CDS Pput_0599 NC_009512.1 669148 669603 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(669148..669603) Pseudomonas putida F1 5194360 YP_001265952.1 CDS dipZ NC_009512.1 669783 671555 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(669783..671555) Pseudomonas putida F1 5194361 YP_001265953.1 CDS Pput_0601 NC_009512.1 671745 673706 R PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(671745..673706) Pseudomonas putida F1 5194257 YP_001265954.1 CDS Pput_0602 NC_009512.1 673950 675305 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase complement(673950..675305) Pseudomonas putida F1 5194258 YP_001265955.1 CDS Pput_0603 NC_009512.1 675554 676621 D hypothetical protein 675554..676621 Pseudomonas putida F1 5194811 YP_001265956.1 CDS Pput_0604 NC_009512.1 676624 677157 D PFAM: NUDIX hydrolase; NUDIX hydrolase 676624..677157 Pseudomonas putida F1 5194812 YP_001265957.1 CDS Pput_0605 NC_009512.1 677214 677768 D PFAM: translation initiation factor SUI1; translation initiation factor SUI1 677214..677768 Pseudomonas putida F1 5191771 YP_001265958.1 CDS Pput_0606 NC_009512.1 677919 679832 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 677919..679832 Pseudomonas putida F1 5191772 YP_001265959.1 CDS Pput_0607 NC_009512.1 680003 680458 D PFAM: protein of unknown function DUF1568; hypothetical protein 680003..680458 Pseudomonas putida F1 5192862 YP_001265960.1 CDS Pput_0608 NC_009512.1 680626 681963 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein complement(680626..681963) Pseudomonas putida F1 5192863 YP_001265961.1 CDS Pput_0609 NC_009512.1 682243 687144 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin domain-containing protein 682243..687144 Pseudomonas putida F1 5191304 YP_001265962.1 CDS Pput_0610 NC_009512.1 687296 687589 R hypothetical protein complement(687296..687589) Pseudomonas putida F1 5191305 YP_001265963.1 CDS Pput_0611 NC_009512.1 687667 690021 D penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 687667..690021 Pseudomonas putida F1 5191061 YP_001265964.1 CDS Pput_0612 NC_009512.1 690114 691778 D PFAM: Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 690114..691778 Pseudomonas putida F1 5191062 YP_001265965.1 CDS Pput_0613 NC_009512.1 691853 692629 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator complement(691853..692629) Pseudomonas putida F1 5193047 YP_001265966.1 CDS Pput_0614 NC_009512.1 692749 693219 R PFAM: peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV complement(692749..693219) Pseudomonas putida F1 5193048 YP_001265967.1 CDS Pput_0615 NC_009512.1 693524 694093 R hypothetical protein complement(693524..694093) Pseudomonas putida F1 5192453 YP_001265968.1 CDS Pput_0616 NC_009512.1 694113 694748 R hypothetical protein complement(694113..694748) Pseudomonas putida F1 5192454 YP_001265969.1 CDS Pput_0617 NC_009512.1 694771 695520 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(694771..695520) Pseudomonas putida F1 5194448 YP_001265970.1 CDS Pput_0618 NC_009512.1 695517 695822 R hypothetical protein complement(695517..695822) Pseudomonas putida F1 5195477 YP_001265971.1 CDS Pput_0619 NC_009512.1 695901 696752 R PFAM: MaoC domain protein dehydratase; dehydratase complement(695901..696752) Pseudomonas putida F1 5195478 YP_001265972.1 CDS fabG NC_009512.1 696755 698107 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(696755..698107) Pseudomonas putida F1 5190195 YP_001265973.1 CDS Pput_0621 NC_009512.1 698225 699502 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 698225..699502 Pseudomonas putida F1 5190196 YP_001265974.1 CDS Pput_0622 NC_009512.1 699592 700371 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 699592..700371 Pseudomonas putida F1 5190750 YP_001265975.1 CDS Pput_0623 NC_009512.1 700437 702380 R PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(700437..702380) Pseudomonas putida F1 5190751 YP_001265976.1 CDS Pput_0624 NC_009512.1 702548 702958 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator complement(702548..702958) Pseudomonas putida F1 5192056 YP_001265977.1 CDS Pput_0625 NC_009512.1 702955 705354 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(702955..705354) Pseudomonas putida F1 5192057 YP_001265978.1 CDS Pput_0626 NC_009512.1 705407 705793 R hypothetical protein complement(705407..705793) Pseudomonas putida F1 5192171 YP_001265979.1 CDS Pput_0627 NC_009512.1 705938 706135 D PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 705938..706135 Pseudomonas putida F1 5192172 YP_001265980.1 CDS Pput_0628 NC_009512.1 706243 707424 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 706243..707424 Pseudomonas putida F1 5190655 YP_001265981.1 CDS Pput_0629 NC_009512.1 707665 707775 D hypothetical protein 707665..707775 Pseudomonas putida F1 5190656 YP_001265982.1 CDS Pput_0630 NC_009512.1 708060 708773 D SMART: regulatory protein, ArsR; regulatory protein ArsR 708060..708773 Pseudomonas putida F1 5190702 YP_001265983.1 CDS Pput_0631 NC_009512.1 708794 709750 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(708794..709750) Pseudomonas putida F1 5190703 YP_001265984.1 CDS Pput_0632 NC_009512.1 709827 710513 R PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(709827..710513) Pseudomonas putida F1 5191472 YP_001265985.1 CDS Pput_0633 NC_009512.1 710882 711466 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; hypothetical protein complement(710882..711466) Pseudomonas putida F1 5191473 YP_001265986.1 CDS Pput_0634 NC_009512.1 711476 712138 R PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator complement(711476..712138) Pseudomonas putida F1 5191590 YP_001265987.1 CDS Pput_0635 NC_009512.1 712229 713146 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(712229..713146) Pseudomonas putida F1 5191591 YP_001265988.1 CDS Pput_0636 NC_009512.1 713265 714611 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 713265..714611 Pseudomonas putida F1 5193741 YP_001265989.1 CDS Pput_0637 NC_009512.1 714685 716178 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 714685..716178 Pseudomonas putida F1 5193742 YP_001265990.1 CDS Pput_0638 NC_009512.1 722388 723047 D PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 722388..723047 Pseudomonas putida F1 5192513 YP_001265991.1 CDS Pput_0639 NC_009512.1 723034 723657 D PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 723034..723657 Pseudomonas putida F1 5193692 YP_001265992.1 CDS Pput_0640 NC_009512.1 723641 725950 D PFAM: Mammalian cell entry related domain protein; hypothetical protein 723641..725950 Pseudomonas putida F1 5193693 YP_001265993.1 CDS rpsT NC_009512.1 726185 726463 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(726185..726463) Pseudomonas putida F1 5191853 YP_001265994.1 CDS Pput_0642 NC_009512.1 726714 728252 D TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; integral membrane protein MviN 726714..728252 Pseudomonas putida F1 5191854 YP_001265995.1 CDS Pput_0643 NC_009512.1 728353 729321 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 728353..729321 Pseudomonas putida F1 5190471 YP_001265996.1 CDS ileS NC_009512.1 729318 732149 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 729318..732149 Pseudomonas putida F1 5190472 YP_001265997.1 CDS lspA NC_009512.1 732142 732657 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 732142..732657 Pseudomonas putida F1 5190535 YP_001265998.1 CDS Pput_0646 NC_009512.1 732650 733087 D PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 732650..733087 Pseudomonas putida F1 5190536 YP_001265999.1 CDS ispH NC_009512.1 733102 734049 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 733102..734049 Pseudomonas putida F1 5191177 YP_001266000.1 CDS Pput_0648 NC_009512.1 734126 734608 R hypothetical protein complement(734126..734608) Pseudomonas putida F1 5191178 YP_001266001.1 CDS Pput_0649 NC_009512.1 734897 735535 D hypothetical protein 734897..735535 Pseudomonas putida F1 5192227 YP_001266002.1 CDS Pput_0650 NC_009512.1 735532 735996 D hypothetical protein 735532..735996 Pseudomonas putida F1 5192228 YP_001266003.1 CDS Pput_0651 NC_009512.1 735998 736387 D type IV pili biogenesis protein PilE 735998..736387 Pseudomonas putida F1 5191793 YP_001266004.1 CDS Pput_0652 NC_009512.1 736442 737539 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 736442..737539 Pseudomonas putida F1 5191794 YP_001266005.1 CDS Pput_0653 NC_009512.1 737684 739093 R PFAM: Amidase; putative amidase complement(737684..739093) Pseudomonas putida F1 5193138 YP_001266006.1 CDS Pput_0654 NC_009512.1 739095 740372 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(739095..740372) Pseudomonas putida F1 5193139 YP_001266007.1 CDS Pput_0655 NC_009512.1 740486 741181 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(740486..741181) Pseudomonas putida F1 5190314 YP_001266008.1 CDS Pput_0656 NC_009512.1 741181 741933 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(741181..741933) Pseudomonas putida F1 5190315 YP_001266009.1 CDS Pput_0657 NC_009512.1 741933 742952 R PFAM: inner-membrane translocator; inner-membrane translocator complement(741933..742952) Pseudomonas putida F1 5193717 YP_001266010.1 CDS Pput_0658 NC_009512.1 742954 743814 R PFAM: inner-membrane translocator; inner-membrane translocator complement(742954..743814) Pseudomonas putida F1 5193718 YP_001266011.1 CDS Pput_0659 NC_009512.1 743880 745082 R branched chain amino acid ABC transporter substrate-binding protein complement(743880..745082) Pseudomonas putida F1 5190201 YP_001266012.1 CDS Pput_0660 NC_009512.1 745173 745952 R PFAM: regulatory protein GntR, HTH; GntR domain protein; regulatory protein GntR complement(745173..745952) Pseudomonas putida F1 5192811 YP_001266013.1 CDS Pput_0661 NC_009512.1 746204 746434 R hypothetical protein complement(746204..746434) Pseudomonas putida F1 5192812 YP_001266014.1 CDS Pput_0662 NC_009512.1 746527 747546 R DNA uptake lipoprotein-like protein complement(746527..747546) Pseudomonas putida F1 5195172 YP_001266015.1 CDS Pput_0663 NC_009512.1 747598 748656 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 747598..748656 Pseudomonas putida F1 5195173 YP_001266016.1 CDS Pput_0664 NC_009512.1 748653 749393 D PFAM: protein of unknown function DUF152; hypothetical protein 748653..749393 Pseudomonas putida F1 5190182 YP_001266017.1 CDS Pput_0665 NC_009512.1 749644 752208 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 749644..752208 Pseudomonas putida F1 5190183 YP_001266018.1 CDS Pput_0666 NC_009512.1 753287 754582 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(753287..754582) Pseudomonas putida F1 5195538 YP_001266019.1 CDS Pput_0667 NC_009512.1 754667 754840 R hypothetical protein complement(754667..754840) Pseudomonas putida F1 5190577 YP_001266020.1 CDS Pput_0668 NC_009512.1 754973 755602 R PFAM: Protein of unknown function DUF1780; hypothetical protein complement(754973..755602) Pseudomonas putida F1 5191240 YP_001266021.1 CDS Pput_0669 NC_009512.1 755658 756089 R hypothetical protein complement(755658..756089) Pseudomonas putida F1 5191241 YP_001266022.1 CDS Pput_0670 NC_009512.1 756095 756883 D hypothetical protein 756095..756883 Pseudomonas putida F1 5190324 YP_001266023.1 CDS Pput_0671 NC_009512.1 757068 757268 R PFAM: protein of unknown function DUF329; zinc-binding protein complement(757068..757268) Pseudomonas putida F1 5190325 YP_001266024.1 CDS coaE NC_009512.1 757265 757888 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(757265..757888) Pseudomonas putida F1 5191706 YP_001266025.1 CDS Pput_0673 NC_009512.1 757888 758754 R PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; prepilin peptidase complement(757888..758754) Pseudomonas putida F1 5191707 YP_001266026.1 CDS Pput_0674 NC_009512.1 758757 759965 R PFAM: type II secretion system protein; type II secretion system protein complement(758757..759965) Pseudomonas putida F1 5193309 YP_001266027.1 CDS Pput_0675 NC_009512.1 760182 760592 D PFAM: Fimbrial protein pilin; fimbrial protein pilin 760182..760592 Pseudomonas putida F1 5193310 YP_001266028.1 CDS Pput_0676 NC_009512.1 760961 762145 D PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 760961..762145 Pseudomonas putida F1 5193922 YP_001266029.1 CDS Pput_0680 NC_009512.1 764563 765465 D hypothetical protein 764563..765465 Pseudomonas putida F1 5195193 YP_001266030.1 CDS Pput_0681 NC_009512.1 765462 766094 D hypothetical protein 765462..766094 Pseudomonas putida F1 5191014 YP_001266031.1 CDS Pput_0682 NC_009512.1 766285 767151 D hypothetical protein 766285..767151 Pseudomonas putida F1 5191015 YP_001266032.1 CDS Pput_0683 NC_009512.1 768040 768822 R hypothetical protein complement(768040..768822) Pseudomonas putida F1 5194115 YP_001266033.1 CDS Pput_0684 NC_009512.1 770447 770674 D hypothetical protein 770447..770674 Pseudomonas putida F1 5194580 YP_001266034.1 CDS Pput_0685 NC_009512.1 770739 772124 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter complement(770739..772124) Pseudomonas putida F1 5194447 YP_001266035.1 CDS Pput_0686 NC_009512.1 772125 772403 R hypothetical protein complement(772125..772403) Pseudomonas putida F1 5195513 YP_001266036.1 CDS Pput_0687 NC_009512.1 772558 773487 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 772558..773487 Pseudomonas putida F1 5195514 YP_001266037.1 CDS Pput_0689 NC_009512.1 773862 774221 D hypothetical protein 773862..774221 Pseudomonas putida F1 5195066 YP_001266038.1 CDS Pput_0690 NC_009512.1 774283 775104 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(774283..775104) Pseudomonas putida F1 5192027 YP_001266039.1 CDS Pput_0691 NC_009512.1 775101 775922 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(775101..775922) Pseudomonas putida F1 5192929 YP_001266040.1 CDS Pput_0692 NC_009512.1 775990 776925 D PFAM: homocysteine S-methyltransferase; homocysteine S-methyltransferase 775990..776925 Pseudomonas putida F1 5192930 YP_001266041.1 CDS Pput_0693 NC_009512.1 777093 778364 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 777093..778364 Pseudomonas putida F1 5194544 YP_001266042.1 CDS Pput_0694 NC_009512.1 778507 779946 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 778507..779946 Pseudomonas putida F1 5194545 YP_001266043.1 CDS Pput_0695 NC_009512.1 779992 780876 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 779992..780876 Pseudomonas putida F1 5193235 YP_001266044.1 CDS Pput_0696 NC_009512.1 780901 782289 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 780901..782289 Pseudomonas putida F1 5193236 YP_001266045.1 CDS Pput_0697 NC_009512.1 782286 782723 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 782286..782723 Pseudomonas putida F1 5193931 YP_001266046.1 CDS Pput_0698 NC_009512.1 782922 783965 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 782922..783965 Pseudomonas putida F1 5193932 YP_001266047.1 CDS Pput_0699 NC_009512.1 783978 785396 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 783978..785396 Pseudomonas putida F1 5195294 YP_001266048.1 CDS Pput_0700 NC_009512.1 785413 785760 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 785413..785760 Pseudomonas putida F1 5195295 YP_001266049.1 CDS Pput_0701 NC_009512.1 785789 786742 R PFAM: Bile acid:sodium symporter; bile acid:sodium symporter complement(785789..786742) Pseudomonas putida F1 5193073 YP_001266050.1 CDS glyA NC_009512.1 787031 788284 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(787031..788284) Pseudomonas putida F1 5193074 YP_001266051.1 CDS Pput_0703 NC_009512.1 788590 792420 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(788590..792420) Pseudomonas putida F1 5190462 YP_001266052.1 CDS Pput_0704 NC_009512.1 792642 793067 D hypothetical protein 792642..793067 Pseudomonas putida F1 5190463 YP_001266053.1 CDS Pput_0705 NC_009512.1 793370 795037 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 793370..795037 Pseudomonas putida F1 5193378 YP_001266054.1 CDS Pput_0706 NC_009512.1 795260 796600 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 795260..796600 Pseudomonas putida F1 5195461 YP_001266055.1 CDS Pput_0707 NC_009512.1 796800 797297 R PFAM: transcription elongation factor GreA/GreB domain protein; GreA/GreB family elongation factor complement(796800..797297) Pseudomonas putida F1 5195462 YP_001266056.1 CDS Pput_0708 NC_009512.1 797365 797721 R hypothetical protein complement(797365..797721) Pseudomonas putida F1 5195021 YP_001266057.1 CDS Pput_0709 NC_009512.1 797937 799790 R hypothetical protein complement(797937..799790) Pseudomonas putida F1 5195022 YP_001266058.1 CDS Pput_0710 NC_009512.1 799862 800350 R hypothetical protein complement(799862..800350) Pseudomonas putida F1 5191600 YP_001266059.1 CDS Pput_0711 NC_009512.1 800600 803038 D ATP-dependent protease-like protein 800600..803038 Pseudomonas putida F1 5191601 YP_001266060.1 CDS Pput_0712 NC_009512.1 803201 803539 D hypothetical protein 803201..803539 Pseudomonas putida F1 5194932 YP_001266061.1 CDS Pput_0713 NC_009512.1 803729 804217 D PFAM: Uncharacterized protein UPF0114; hypothetical protein 803729..804217 Pseudomonas putida F1 5194933 YP_001266062.1 CDS Pput_0714 NC_009512.1 804435 804740 D hypothetical protein 804435..804740 Pseudomonas putida F1 5194949 YP_001266063.1 CDS Pput_0715 NC_009512.1 804826 805443 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 804826..805443 Pseudomonas putida F1 5194950 YP_001266064.1 CDS Pput_0716 NC_009512.1 805470 805715 R hypothetical protein complement(805470..805715) Pseudomonas putida F1 5190302 YP_001266065.1 CDS Pput_0717 NC_009512.1 805800 806141 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; alkylphosphonate utilization operon protein PhnA complement(805800..806141) Pseudomonas putida F1 5190303 YP_001266066.1 CDS Pput_0718 NC_009512.1 806301 807269 R PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(806301..807269) Pseudomonas putida F1 5195547 YP_001266067.1 CDS Pput_0719 NC_009512.1 807296 807529 D hypothetical protein 807296..807529 Pseudomonas putida F1 5195548 YP_001266068.1 CDS rplU NC_009512.1 807514 807828 D PFAM: ribosomal protein L21; 50S ribosomal protein L21 807514..807828 Pseudomonas putida F1 5193317 YP_001266069.1 CDS rpmA NC_009512.1 807867 808124 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 807867..808124 Pseudomonas putida F1 5193318 YP_001266070.1 CDS obgE NC_009512.1 808313 809539 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 808313..809539 Pseudomonas putida F1 5194590 YP_001266071.1 CDS Pput_0723 NC_009512.1 809625 810743 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 809625..810743 Pseudomonas putida F1 5194591 YP_001266072.1 CDS Pput_0724 NC_009512.1 810740 811201 D PFAM: CreA family protein; CreA family protein 810740..811201 Pseudomonas putida F1 5191268 YP_001266073.1 CDS Pput_0725 NC_009512.1 811459 814254 R hypothetical protein complement(811459..814254) Pseudomonas putida F1 5191269 YP_001266074.1 CDS Pput_0726 NC_009512.1 814287 814994 R hypothetical protein complement(814287..814994) Pseudomonas putida F1 5193835 YP_001266075.1 CDS Pput_0727 NC_009512.1 814984 816318 R hypothetical protein complement(814984..816318) Pseudomonas putida F1 5192225 YP_001266076.1 CDS Pput_0728 NC_009512.1 816705 817490 D hypothetical protein 816705..817490 Pseudomonas putida F1 5192226 YP_001266077.1 CDS Pput_0729 NC_009512.1 817487 817942 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 817487..817942 Pseudomonas putida F1 5194822 YP_001266078.1 CDS Pput_0730 NC_009512.1 818081 818656 D PFAM: Peptidase M15A; peptidase M15A 818081..818656 Pseudomonas putida F1 5194823 YP_001266079.1 CDS Pput_0731 NC_009512.1 818596 819513 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(818596..819513) Pseudomonas putida F1 5191586 YP_001266080.1 CDS Pput_0732 NC_009512.1 819741 820355 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 819741..820355 Pseudomonas putida F1 5191587 YP_001266081.1 CDS Pput_0733 NC_009512.1 820658 821644 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(820658..821644) Pseudomonas putida F1 5195067 YP_001266082.1 CDS Pput_0734 NC_009512.1 821775 822989 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 821775..822989 Pseudomonas putida F1 5194367 YP_001266083.1 CDS Pput_0735 NC_009512.1 823314 824471 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 823314..824471 Pseudomonas putida F1 5193604 YP_001266084.1 CDS Pput_0736 NC_009512.1 824479 825435 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(824479..825435) Pseudomonas putida F1 5193605 YP_001266085.1 CDS Pput_0737 NC_009512.1 825422 825937 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(825422..825937) Pseudomonas putida F1 5194471 YP_001266086.1 CDS Pput_0738 NC_009512.1 826112 826735 D PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase II 826112..826735 Pseudomonas putida F1 5194472 YP_001266087.1 CDS Pput_0739 NC_009512.1 826783 827835 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 826783..827835 Pseudomonas putida F1 5192805 YP_001266088.1 CDS Pput_0740 NC_009512.1 827892 830303 D PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 827892..830303 Pseudomonas putida F1 5192806 YP_001266089.1 CDS Pput_0741 NC_009512.1 830330 831547 R PFAM: Egg lysin (Sperm-lysin); hypothetical protein complement(830330..831547) Pseudomonas putida F1 5194309 YP_001266090.1 CDS Pput_0742 NC_009512.1 832127 833557 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(832127..833557) Pseudomonas putida F1 5194310 YP_001266091.1 CDS Pput_0743 NC_009512.1 833571 835070 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(833571..835070) Pseudomonas putida F1 5190316 YP_001266092.1 CDS Pput_0744 NC_009512.1 835163 835672 R hypothetical protein complement(835163..835672) Pseudomonas putida F1 5190317 YP_001266093.1 CDS Pput_0745 NC_009512.1 835764 836384 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 835764..836384 Pseudomonas putida F1 5192562 YP_001266094.1 CDS Pput_0746 NC_009512.1 836491 837306 D PFAM: protein of unknown function DUF344; hypothetical protein 836491..837306 Pseudomonas putida F1 5192563 YP_001266095.1 CDS Pput_0747 NC_009512.1 837343 838539 D TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; potassium efflux system protein 837343..838539 Pseudomonas putida F1 5193849 YP_001266096.1 CDS Pput_0748 NC_009512.1 838581 839678 D PFAM: protein of unknown function UPF0118; hypothetical protein 838581..839678 Pseudomonas putida F1 5192443 YP_001266097.1 CDS Pput_0749 NC_009512.1 839682 841196 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 839682..841196 Pseudomonas putida F1 5192444 YP_001266098.1 CDS Pput_0750 NC_009512.1 841193 842290 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 841193..842290 Pseudomonas putida F1 5193655 YP_001266099.1 CDS Pput_0751 NC_009512.1 842280 843302 D hypothetical protein 842280..843302 Pseudomonas putida F1 5193656 YP_001266100.1 CDS Pput_0752 NC_009512.1 843322 845034 R TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter complement(843322..845034) Pseudomonas putida F1 5194678 YP_001266101.1 CDS Pput_0753 NC_009512.1 845209 846309 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(845209..846309) Pseudomonas putida F1 5194679 YP_001266102.1 CDS Pput_0754 NC_009512.1 846334 846918 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(846334..846918) Pseudomonas putida F1 5192102 YP_001266103.1 CDS Pput_0755 NC_009512.1 846998 847591 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(846998..847591) Pseudomonas putida F1 5192103 YP_001266104.1 CDS Pput_0756 NC_009512.1 847710 848642 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(847710..848642) Pseudomonas putida F1 5195390 YP_001266105.1 CDS ipk NC_009512.1 848795 849655 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(848795..849655) Pseudomonas putida F1 5193036 YP_001266106.1 CDS lolB NC_009512.1 849660 850277 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(849660..850277) Pseudomonas putida F1 5193163 YP_001266107.1 CDS Pput_0759 NC_009512.1 850282 852003 R PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(850282..852003) Pseudomonas putida F1 5193164 YP_001266108.1 CDS hemA NC_009512.1 853706 854983 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 853706..854983 Pseudomonas putida F1 5195078 YP_001266109.1 CDS prfA NC_009512.1 854980 856062 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 854980..856062 Pseudomonas putida F1 5195079 YP_001266110.1 CDS Pput_0762 NC_009512.1 856062 856892 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; HemK family modification methylase 856062..856892 Pseudomonas putida F1 5194318 YP_001266111.1 CDS Pput_0763 NC_009512.1 856886 857641 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 856886..857641 Pseudomonas putida F1 5194319 YP_001266112.1 CDS Pput_0764 NC_009512.1 857634 858431 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 857634..858431 Pseudomonas putida F1 5190639 YP_001266113.1 CDS Pput_0765 NC_009512.1 858592 859056 D hypothetical protein 858592..859056 Pseudomonas putida F1 5190640 YP_001266114.1 CDS Pput_0766 NC_009512.1 859180 859809 R hypothetical protein complement(859180..859809) Pseudomonas putida F1 5191084 YP_001266115.1 CDS Pput_0767 NC_009512.1 859890 861317 R PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase complement(859890..861317) Pseudomonas putida F1 5191085 YP_001266116.1 CDS Pput_0768 NC_009512.1 861308 862207 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(861308..862207) Pseudomonas putida F1 5190609 YP_001266117.1 CDS Pput_0769 NC_009512.1 862197 863165 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; hypothetical protein complement(862197..863165) Pseudomonas putida F1 5190610 YP_001266118.1 CDS Pput_0770 NC_009512.1 863269 864255 R NAD/FAD-dependent oxidoreductase-like protein complement(863269..864255) Pseudomonas putida F1 5192202 YP_001266119.1 CDS Pput_0771 NC_009512.1 864443 865348 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase 864443..865348 Pseudomonas putida F1 5192203 YP_001266120.1 CDS hemH NC_009512.1 865362 866378 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 865362..866378 Pseudomonas putida F1 5191137 YP_001266121.1 CDS Pput_0773 NC_009512.1 866414 867679 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease complement(866414..867679) Pseudomonas putida F1 5191276 YP_001266122.1 CDS upp NC_009512.1 867682 868320 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(867682..868320) Pseudomonas putida F1 5191277 YP_001266123.1 CDS Pput_0775 NC_009512.1 868483 869040 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 868483..869040 Pseudomonas putida F1 5193260 YP_001266124.1 CDS Pput_0776 NC_009512.1 869043 869516 D hypothetical protein 869043..869516 Pseudomonas putida F1 5193261 YP_001266125.1 CDS Pput_0777 NC_009512.1 869568 870038 D hypothetical protein 869568..870038 Pseudomonas putida F1 5195344 YP_001266126.1 CDS Pput_0778 NC_009512.1 870107 870397 D hypothetical protein 870107..870397 Pseudomonas putida F1 5195345 YP_001266127.1 CDS Pput_0779 NC_009512.1 870563 872071 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(870563..872071) Pseudomonas putida F1 5190485 YP_001266128.1 CDS Pput_0780 NC_009512.1 873052 873636 D hypothetical protein 873052..873636 Pseudomonas putida F1 5190486 YP_001266129.1 CDS Pput_0781 NC_009512.1 873711 873917 R hypothetical protein complement(873711..873917) Pseudomonas putida F1 5193899 YP_001266130.1 CDS Pput_0782 NC_009512.1 874078 874338 D hypothetical protein 874078..874338 Pseudomonas putida F1 5193900 YP_001266131.1 CDS Pput_0783 NC_009512.1 874462 875628 R PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(874462..875628) Pseudomonas putida F1 5193516 YP_001266132.1 CDS Pput_0784 NC_009512.1 875754 875939 D hypothetical protein 875754..875939 Pseudomonas putida F1 5193517 YP_001266133.1 CDS Pput_0785 NC_009512.1 875939 876199 D hypothetical protein 875939..876199 Pseudomonas putida F1 5194194 YP_001266134.1 CDS Pput_0786 NC_009512.1 876215 876835 D PFAM: protein of unknown function DUF159; hypothetical protein 876215..876835 Pseudomonas putida F1 5194195 YP_001266135.1 CDS Pput_0787 NC_009512.1 877063 877881 D PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 877063..877881 Pseudomonas putida F1 5195228 YP_001266136.1 CDS Pput_0788 NC_009512.1 877925 878509 R PFAM: protein of unknown function UPF0016; hypothetical protein complement(877925..878509) Pseudomonas putida F1 5195229 YP_001266137.1 CDS Pput_0789 NC_009512.1 878778 879776 R PFAM: methyltransferase small; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; rRNA (guanine-N(2)-)-methyltransferase complement(878778..879776) Pseudomonas putida F1 5195410 YP_001266138.1 CDS Pput_0790 NC_009512.1 879831 880796 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(879831..880796) Pseudomonas putida F1 5195411 YP_001266139.1 CDS Pput_0791 NC_009512.1 881090 882772 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 881090..882772 Pseudomonas putida F1 5190890 YP_001266140.1 CDS Pput_0792 NC_009512.1 883104 884990 D PFAM: protein of unknown function DUF1302; hypothetical protein 883104..884990 Pseudomonas putida F1 5190891 YP_001266141.1 CDS Pput_0793 NC_009512.1 885016 886380 D PFAM: protein of unknown function DUF1329; hypothetical protein 885016..886380 Pseudomonas putida F1 5190365 YP_001266142.1 CDS Pput_0794 NC_009512.1 886707 889424 D PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4; regulatory protein LuxR 886707..889424 Pseudomonas putida F1 5190366 YP_001266143.1 CDS Pput_0795 NC_009512.1 889584 891191 D PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; response regulator receiver protein 889584..891191 Pseudomonas putida F1 5192752 YP_001266144.1 CDS Pput_0796 NC_009512.1 891188 891880 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase 891188..891880 Pseudomonas putida F1 5192753 YP_001266145.1 CDS Pput_0797 NC_009512.1 891935 892651 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 891935..892651 Pseudomonas putida F1 5192834 YP_001266146.1 CDS Pput_0798 NC_009512.1 892737 893480 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 892737..893480 Pseudomonas putida F1 5190704 YP_001266147.1 CDS Pput_0799 NC_009512.1 893560 895647 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(893560..895647) Pseudomonas putida F1 5190705 YP_001266148.1 CDS Pput_0800 NC_009512.1 895679 895843 R hypothetical protein complement(895679..895843) Pseudomonas putida F1 5190692 YP_001266149.1 CDS Pput_0801 NC_009512.1 895980 896465 D PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 895980..896465 Pseudomonas putida F1 5190693 YP_001266150.1 CDS Pput_0802 NC_009512.1 896611 897093 D PFAM: glutathione peroxidase; peroxiredoxin 896611..897093 Pseudomonas putida F1 5193787 YP_001266151.1 CDS Pput_0803 NC_009512.1 897158 898348 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(897158..898348) Pseudomonas putida F1 5193788 YP_001266152.1 CDS Pput_0804 NC_009512.1 898527 899843 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 898527..899843 Pseudomonas putida F1 5195346 YP_001266153.1 CDS Pput_0805 NC_009512.1 900069 901406 D hypothetical protein 900069..901406 Pseudomonas putida F1 5195347 YP_001266154.1 CDS Pput_0806 NC_009512.1 901422 902045 D PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein 901422..902045 Pseudomonas putida F1 5195130 YP_001266155.1 CDS Pput_0808 NC_009512.1 902364 903092 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(902364..903092) Pseudomonas putida F1 5194100 YP_001266156.1 CDS Pput_0809 NC_009512.1 903423 904385 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 903423..904385 Pseudomonas putida F1 5195200 YP_001266157.1 CDS Pput_0810 NC_009512.1 904461 905309 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(904461..905309) Pseudomonas putida F1 5195201 YP_001266158.1 CDS Pput_0811 NC_009512.1 905553 907706 D PFAM: protein of unknown function DUF1631; hypothetical protein 905553..907706 Pseudomonas putida F1 5194530 YP_001266159.1 CDS Pput_0812 NC_009512.1 907795 908367 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 907795..908367 Pseudomonas putida F1 5194531 YP_001266160.1 CDS Pput_0813 NC_009512.1 908364 909194 D signaling modulator of AmpD, AmpE 908364..909194 Pseudomonas putida F1 5190355 YP_001266161.1 CDS Pput_0814 NC_009512.1 909239 910015 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase complement(909239..910015) Pseudomonas putida F1 5190356 YP_001266162.1 CDS Pput_0815 NC_009512.1 910018 911082 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(910018..911082) Pseudomonas putida F1 5194016 YP_001266163.1 CDS Pput_0816 NC_009512.1 911298 914150 D TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase 911298..914150 Pseudomonas putida F1 5194017 YP_001266164.1 CDS Pput_0817 NC_009512.1 914151 915098 D PFAM: PfkB domain protein; 1-phosphofructokinase 914151..915098 Pseudomonas putida F1 5190306 YP_001266165.1 CDS Pput_0818 NC_009512.1 915095 916837 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 915095..916837 Pseudomonas putida F1 5190307 YP_001266166.1 CDS Pput_0819 NC_009512.1 917032 917253 R hypothetical protein complement(917032..917253) Pseudomonas putida F1 5191598 YP_001266167.1 CDS Pput_0820 NC_009512.1 917455 917931 D hypothetical protein 917455..917931 Pseudomonas putida F1 5191599 YP_001266168.1 CDS Pput_0821 NC_009512.1 917928 919418 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(917928..919418) Pseudomonas putida F1 5191387 YP_001266169.1 CDS Pput_0822 NC_009512.1 919619 920953 R PFAM: outer membrane porin; outer membrane porin complement(919619..920953) Pseudomonas putida F1 5191388 YP_001266170.1 CDS Pput_0823 NC_009512.1 921159 921383 R hypothetical protein complement(921159..921383) Pseudomonas putida F1 5194575 YP_001266171.1 CDS Pput_0824 NC_009512.1 921584 922318 R PFAM: protein of unknown function UPF0153; hypothetical protein complement(921584..922318) Pseudomonas putida F1 5192576 YP_001266172.1 CDS Pput_0825 NC_009512.1 922315 922626 R hypothetical protein complement(922315..922626) Pseudomonas putida F1 5192577 YP_001266173.1 CDS Pput_0826 NC_009512.1 922715 923614 R PFAM: response regulator receiver; CheW domain protein; putative CheW protein complement(922715..923614) Pseudomonas putida F1 5190884 YP_001266174.1 CDS Pput_0827 NC_009512.1 923819 925003 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein complement(923819..925003) Pseudomonas putida F1 5190885 YP_001266175.1 CDS Pput_0828 NC_009512.1 925000 927168 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(925000..927168) Pseudomonas putida F1 5192180 YP_001266176.1 CDS Pput_0829 NC_009512.1 927165 928601 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein complement(927165..928601) Pseudomonas putida F1 5192181 YP_001266177.1 CDS Pput_0830 NC_009512.1 928665 952859 R PFAM: YLP motif domain protein; glycoprotein; glycoprotein complement(928665..952859) Pseudomonas putida F1 5195569 YP_001266178.1 CDS Pput_0831 NC_009512.1 952939 954495 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(952939..954495) Pseudomonas putida F1 5195570 YP_001266179.1 CDS Pput_0832 NC_009512.1 954650 955828 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 954650..955828 Pseudomonas putida F1 5193402 YP_001266180.1 CDS Pput_0833 NC_009512.1 956285 956791 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 956285..956791 Pseudomonas putida F1 5193403 YP_001266181.1 CDS Pput_0835 NC_009512.1 957351 958292 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; ubiquinol oxidase subunit II 957351..958292 Pseudomonas putida F1 5194926 YP_001266182.1 CDS Pput_0836 NC_009512.1 958296 960314 D TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I 958296..960314 Pseudomonas putida F1 5192358 YP_001266183.1 CDS Pput_0837 NC_009512.1 960318 960944 D TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III 960318..960944 Pseudomonas putida F1 5195072 YP_001266184.1 CDS Pput_0838 NC_009512.1 960944 961276 D TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 960944..961276 Pseudomonas putida F1 5195073 YP_001266185.1 CDS Pput_0839 NC_009512.1 961288 962175 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 961288..962175 Pseudomonas putida F1 5191199 YP_001266186.1 CDS Pput_0840 NC_009512.1 962485 963693 D PFAM: aminotransferase, class I and II; aminotransferase 962485..963693 Pseudomonas putida F1 5191200 YP_001266187.1 CDS Pput_0841 NC_009512.1 963808 964935 D hypothetical protein 963808..964935 Pseudomonas putida F1 5195115 YP_001266188.1 CDS Pput_0842 NC_009512.1 965096 965479 D PFAM: protein of unknown function UPF0153; hypothetical protein 965096..965479 Pseudomonas putida F1 5195116 YP_001266189.1 CDS Pput_0843 NC_009512.1 965725 966306 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 965725..966306 Pseudomonas putida F1 5190456 YP_001266190.1 CDS Pput_0844 NC_009512.1 966363 966890 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 966363..966890 Pseudomonas putida F1 5190457 YP_001266191.1 CDS Pput_0845 NC_009512.1 966887 967858 D PFAM: FecR protein; anti-FecI sigma factor FecR 966887..967858 Pseudomonas putida F1 5190976 YP_001266192.1 CDS Pput_0846 NC_009512.1 967935 970460 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 967935..970460 Pseudomonas putida F1 5190977 YP_001266193.1 CDS Pput_0847 NC_009512.1 970528 971067 D hypothetical protein 970528..971067 Pseudomonas putida F1 5193045 YP_001266194.1 CDS Pput_0848 NC_009512.1 971088 971474 D PFAM: protein of unknown function DUF1311; hypothetical protein 971088..971474 Pseudomonas putida F1 5193046 YP_001266195.1 CDS Pput_0849 NC_009512.1 971610 972722 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(971610..972722) Pseudomonas putida F1 5190715 YP_001266196.1 CDS Pput_0850 NC_009512.1 972722 973756 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(972722..973756) Pseudomonas putida F1 5190862 YP_001266197.1 CDS Pput_0851 NC_009512.1 973883 974737 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 973883..974737 Pseudomonas putida F1 5190863 YP_001266198.1 CDS Pput_0852 NC_009512.1 975069 976364 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 975069..976364 Pseudomonas putida F1 5194536 YP_001266199.1 CDS Pput_0853 NC_009512.1 976361 977128 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 976361..977128 Pseudomonas putida F1 5194537 YP_001266200.1 CDS Pput_0854 NC_009512.1 977165 978058 R PFAM: protein of unknown function UPF0187; hypothetical protein complement(977165..978058) Pseudomonas putida F1 5195559 YP_001266201.1 CDS Pput_0855 NC_009512.1 978280 978573 D TIGRFAM: Addiction module killer protein, HI1419; PFAM: protein of unknown function DUF891; addiction module killer protein 978280..978573 Pseudomonas putida F1 5195560 YP_001266202.1 CDS Pput_0856 NC_009512.1 978570 978866 D TIGRFAM: Addiction module antidote protein, HI1420; putative transcriptional regulator 978570..978866 Pseudomonas putida F1 5195056 YP_001266203.1 CDS Pput_0857 NC_009512.1 978877 979356 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(978877..979356) Pseudomonas putida F1 5195057 YP_001266204.1 CDS Pput_0858 NC_009512.1 979527 980150 R hypothetical protein complement(979527..980150) Pseudomonas putida F1 5192052 YP_001266205.1 CDS Pput_0859 NC_009512.1 980517 980939 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 980517..980939 Pseudomonas putida F1 5192053 YP_001266206.1 CDS Pput_0860 NC_009512.1 981500 982915 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 981500..982915 Pseudomonas putida F1 5194654 YP_001266207.1 CDS Pput_0861 NC_009512.1 982995 983489 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 982995..983489 Pseudomonas putida F1 5194655 YP_001266208.1 CDS queA NC_009512.1 983752 984801 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 983752..984801 Pseudomonas putida F1 5194927 YP_001266209.1 CDS tgt NC_009512.1 984798 985931 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 984798..985931 Pseudomonas putida F1 5193056 YP_001266210.1 CDS yajC NC_009512.1 985974 986309 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 985974..986309 Pseudomonas putida F1 5192044 YP_001266211.1 CDS secD NC_009512.1 986373 988235 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 986373..988235 Pseudomonas putida F1 5192045 YP_001266212.1 CDS secF NC_009512.1 988246 989154 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 988246..989154 Pseudomonas putida F1 5193232 YP_001266213.1 CDS Pput_0867 NC_009512.1 989288 989818 D PFAM: 17 kDa surface antigen; hypothetical protein 989288..989818 Pseudomonas putida F1 5193233 YP_001266214.1 CDS Pput_0868 NC_009512.1 989988 990806 R PFAM: inositol monophosphatase; inositol-phosphate phosphatase complement(989988..990806) Pseudomonas putida F1 5192294 YP_001266215.1 CDS Pput_0869 NC_009512.1 990874 991713 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 990874..991713 Pseudomonas putida F1 5192295 YP_001266216.1 CDS Pput_0870 NC_009512.1 991717 992502 D TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase 991717..992502 Pseudomonas putida F1 5190917 YP_001266217.1 CDS Pput_0871 NC_009512.1 992625 993173 D TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 992625..993173 Pseudomonas putida F1 5190918 YP_001266218.1 CDS Pput_0872 NC_009512.1 993219 994433 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 993219..994433 Pseudomonas putida F1 5193580 YP_001266219.1 CDS Pput_0873 NC_009512.1 994480 994866 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; scaffold protein 994480..994866 Pseudomonas putida F1 5193581 YP_001266220.1 CDS Pput_0874 NC_009512.1 994895 995218 D TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein IscA 994895..995218 Pseudomonas putida F1 5192874 YP_001266221.1 CDS hscB NC_009512.1 995227 995748 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 995227..995748 Pseudomonas putida F1 5190270 YP_001266222.1 CDS hscA NC_009512.1 995792 997654 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 995792..997654 Pseudomonas putida F1 5190271 YP_001266223.1 CDS Pput_0877 NC_009512.1 997658 997999 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; 2Fe-2S ferredoxin 997658..997999 Pseudomonas putida F1 5194750 YP_001266224.1 CDS Pput_0878 NC_009512.1 998010 998210 D PFAM: protein of unknown function DUF528; hypothetical protein 998010..998210 Pseudomonas putida F1 5194751 YP_001266225.1 CDS ndk NC_009512.1 998299 998724 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 998299..998724 Pseudomonas putida F1 5193448 YP_001266226.1 CDS Pput_0880 NC_009512.1 998753 999898 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM protein 998753..999898 Pseudomonas putida F1 5193449 YP_001266227.1 CDS Pput_0881 NC_009512.1 999913 1000674 D TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 999913..1000674 Pseudomonas putida F1 5191130 YP_001266228.1 CDS Pput_0882 NC_009512.1 1000671 1001693 D SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1000671..1001693 Pseudomonas putida F1 5191131 YP_001266229.1 CDS ispG NC_009512.1 1001697 1002806 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1001697..1002806 Pseudomonas putida F1 5195288 YP_001266230.1 CDS hisS NC_009512.1 1002832 1004121 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1002832..1004121 Pseudomonas putida F1 5195289 YP_001266231.1 CDS Pput_0885 NC_009512.1 1004161 1004802 D hypothetical protein 1004161..1004802 Pseudomonas putida F1 5191416 YP_001266232.1 CDS Pput_0886 NC_009512.1 1004803 1005945 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1004803..1005945 Pseudomonas putida F1 5191417 YP_001266233.1 CDS engA NC_009512.1 1006062 1007525 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1006062..1007525 Pseudomonas putida F1 5193797 YP_001266234.1 CDS Pput_0888 NC_009512.1 1007677 1008825 D catalyzes the transfer of an amino moiety; putative aminotransferase 1007677..1008825 Pseudomonas putida F1 5193798 YP_001266235.1 CDS Pput_0889 NC_009512.1 1008813 1009604 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1008813..1009604 Pseudomonas putida F1 5195517 YP_001266236.1 CDS Pput_0890 NC_009512.1 1009729 1012281 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(1009729..1012281) Pseudomonas putida F1 5195518 YP_001266237.1 CDS Pput_0891 NC_009512.1 1012535 1014826 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(1012535..1014826) Pseudomonas putida F1 5192086 YP_001266238.1 CDS Pput_0892 NC_009512.1 1015048 1015728 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; putative hydroxylase 1015048..1015728 Pseudomonas putida F1 5192087 YP_001266239.1 CDS Pput_0893 NC_009512.1 1015732 1016481 D PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1015732..1016481 Pseudomonas putida F1 5190562 YP_001266240.1 CDS Pput_0894 NC_009512.1 1016793 1017956 R PFAM: Orn/DAP/Arg decarboxylase 2; ornithine decarboxylase complement(1016793..1017956) Pseudomonas putida F1 5190563 YP_001266241.1 CDS Pput_0895 NC_009512.1 1018451 1018948 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1018451..1018948 Pseudomonas putida F1 5191045 YP_001266242.1 CDS Pput_0896 NC_009512.1 1018969 1019931 D PFAM: FecR protein; anti-FecI sigma factor FecR 1018969..1019931 Pseudomonas putida F1 5191046 YP_001266243.1 CDS Pput_0897 NC_009512.1 1020040 1022469 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1020040..1022469 Pseudomonas putida F1 5191112 YP_001266244.1 CDS Pput_0898 NC_009512.1 1022636 1023793 R TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(1022636..1023793) Pseudomonas putida F1 5191113 YP_001266245.1 CDS Pput_0899 NC_009512.1 1023790 1024443 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1023790..1024443) Pseudomonas putida F1 5194765 YP_001266246.1 CDS Pput_0900 NC_009512.1 1024440 1025351 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(1024440..1025351) Pseudomonas putida F1 5193424 YP_001266247.1 CDS Pput_0901 NC_009512.1 1025365 1026078 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1025365..1026078) Pseudomonas putida F1 5193425 YP_001266248.1 CDS prfC NC_009512.1 1026594 1028219 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1026594..1028219 Pseudomonas putida F1 5191436 YP_001266249.1 CDS Pput_0903 NC_009512.1 1028350 1029429 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1028350..1029429) Pseudomonas putida F1 5191437 YP_001266250.1 CDS Pput_0904 NC_009512.1 1029482 1029823 R PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein complement(1029482..1029823) Pseudomonas putida F1 5190230 YP_001266251.1 CDS Pput_0905 NC_009512.1 1029857 1031263 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1029857..1031263) Pseudomonas putida F1 5190231 YP_001266252.1 CDS Pput_0906 NC_009512.1 1031328 1032152 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(1031328..1032152) Pseudomonas putida F1 5191466 YP_001266253.1 CDS Pput_0908 NC_009512.1 1033430 1034179 D hypothetical protein 1033430..1034179 Pseudomonas putida F1 5194487 YP_001266254.1 CDS Pput_0909 NC_009512.1 1034198 1034656 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1034198..1034656 Pseudomonas putida F1 5193546 YP_001266255.1 CDS Pput_0910 NC_009512.1 1034653 1035099 D hypothetical protein 1034653..1035099 Pseudomonas putida F1 5193547 YP_001266256.1 CDS Pput_0911 NC_009512.1 1035110 1035985 D hypothetical protein 1035110..1035985 Pseudomonas putida F1 5192155 YP_001266257.1 CDS Pput_0912 NC_009512.1 1035982 1037214 D biotin carboxylase-like protein 1035982..1037214 Pseudomonas putida F1 5192156 YP_001266258.1 CDS Pput_0913 NC_009512.1 1037255 1038496 D PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 1037255..1038496 Pseudomonas putida F1 5194399 YP_001266259.1 CDS Pput_0914 NC_009512.1 1038572 1039441 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1038572..1039441 Pseudomonas putida F1 5194400 YP_001266260.1 CDS Pput_0915 NC_009512.1 1039536 1040516 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1039536..1040516 Pseudomonas putida F1 5194880 YP_001266261.1 CDS Pput_0916 NC_009512.1 1040519 1040698 D PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1040519..1040698 Pseudomonas putida F1 5194881 YP_001266262.1 CDS dppF NC_009512.1 1041138 1042106 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(1041138..1042106) Pseudomonas putida F1 5191801 YP_001266263.1 CDS Pput_0918 NC_009512.1 1042106 1043074 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1042106..1043074) Pseudomonas putida F1 5191802 YP_001266264.1 CDS Pput_0919 NC_009512.1 1043085 1044011 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1043085..1044011) Pseudomonas putida F1 5191568 YP_001266265.1 CDS Pput_0920 NC_009512.1 1044022 1045032 R PFAM: binding-protein-dependent transport systems inner membrane component; alkaline phosphatase complement(1044022..1045032) Pseudomonas putida F1 5191569 YP_001266266.1 CDS Pput_0921 NC_009512.1 1045124 1046734 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1045124..1046734) Pseudomonas putida F1 5195370 YP_001266267.1 CDS Pput_0922 NC_009512.1 1046813 1048192 R PFAM: outer membrane porin; outer membrane porin complement(1046813..1048192) Pseudomonas putida F1 5195371 YP_001266268.1 CDS Pput_0923 NC_009512.1 1048421 1050013 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1048421..1050013) Pseudomonas putida F1 5195340 YP_001266269.1 CDS Pput_0924 NC_009512.1 1050161 1051786 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1050161..1051786) Pseudomonas putida F1 5195341 YP_001266270.1 CDS Pput_0925 NC_009512.1 1052167 1052883 R PFAM: protein of unknown function DUF541; hypothetical protein complement(1052167..1052883) Pseudomonas putida F1 5190206 YP_001266271.1 CDS Pput_0926 NC_009512.1 1053086 1054342 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1053086..1054342 Pseudomonas putida F1 5194494 YP_001266272.1 CDS Pput_0927 NC_009512.1 1054339 1054902 D PFAM: response regulator receiver; helix-turn-helix, Fis-type; two component Fis family transcriptional regulator 1054339..1054902 Pseudomonas putida F1 5194495 YP_001266273.1 CDS Pput_0928 NC_009512.1 1055011 1056090 D PFAM: beta-lactamase; beta-lactamase 1055011..1056090 Pseudomonas putida F1 5191000 YP_001266274.1 CDS Pput_0929 NC_009512.1 1056087 1056383 D hypothetical protein 1056087..1056383 Pseudomonas putida F1 5191001 YP_001266275.1 CDS Pput_0930 NC_009512.1 1056428 1057009 D PFAM: YceI family protein; hypothetical protein 1056428..1057009 Pseudomonas putida F1 5192631 YP_001266276.1 CDS Pput_0931 NC_009512.1 1057011 1058168 D phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 1057011..1058168 Pseudomonas putida F1 5192632 YP_001266277.1 CDS Pput_0932 NC_009512.1 1058220 1058798 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 1058220..1058798 Pseudomonas putida F1 5193216 YP_001266278.1 CDS Pput_0933 NC_009512.1 1058829 1059227 R PFAM: protein of unknown function DUF1486; hypothetical protein complement(1058829..1059227) Pseudomonas putida F1 5193217 YP_001266279.1 CDS Pput_0934 NC_009512.1 1059343 1059933 D hypothetical protein 1059343..1059933 Pseudomonas putida F1 5192556 YP_001266280.1 CDS Pput_0935 NC_009512.1 1059930 1060802 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1059930..1060802 Pseudomonas putida F1 5192557 YP_001266281.1 CDS Pput_0936 NC_009512.1 1060922 1062445 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(1060922..1062445) Pseudomonas putida F1 5194552 YP_001266282.1 CDS Pput_0937 NC_009512.1 1062794 1063864 R hypothetical protein complement(1062794..1063864) Pseudomonas putida F1 5194553 YP_001266283.1 CDS Pput_0938 NC_009512.1 1064220 1065140 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; hypothetical protein 1064220..1065140 Pseudomonas putida F1 5194334 YP_001266284.1 CDS Pput_0939 NC_009512.1 1065183 1065911 R PAP2 (acid phosphatase) superfamily protein-like protein complement(1065183..1065911) Pseudomonas putida F1 5194335 YP_001266285.1 CDS Pput_0940 NC_009512.1 1066095 1066778 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1066095..1066778 Pseudomonas putida F1 5190740 YP_001266286.1 CDS Pput_0941 NC_009512.1 1066768 1068078 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1066768..1068078 Pseudomonas putida F1 5190741 YP_001266287.1 CDS Pput_0942 NC_009512.1 1068186 1068866 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1068186..1068866 Pseudomonas putida F1 5194263 YP_001266288.1 CDS Pput_0943 NC_009512.1 1068873 1069571 D PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 1068873..1069571 Pseudomonas putida F1 5194264 YP_001266289.1 CDS Pput_0944 NC_009512.1 1069571 1069804 D hypothetical protein 1069571..1069804 Pseudomonas putida F1 5194905 YP_001266290.1 CDS Pput_0945 NC_009512.1 1069913 1072957 R MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein complement(1069913..1072957) Pseudomonas putida F1 5194906 YP_001266291.1 CDS Pput_0946 NC_009512.1 1072970 1074118 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(1072970..1074118) Pseudomonas putida F1 5190186 YP_001266292.1 CDS Pput_0947 NC_009512.1 1074337 1075434 R PFAM: uncharacterised conserved protein UCP028101; hypothetical protein complement(1074337..1075434) Pseudomonas putida F1 5190187 YP_001266293.1 CDS Pput_0948 NC_009512.1 1075437 1076501 R periplasmic lipoprotein-like protein complement(1075437..1076501) Pseudomonas putida F1 5193114 YP_001266294.1 CDS Pput_0949 NC_009512.1 1076521 1077948 R PFAM: protein of unknown function DUF1111; hypothetical protein complement(1076521..1077948) Pseudomonas putida F1 5193115 YP_001266295.1 CDS Pput_0950 NC_009512.1 1078058 1078444 R hypothetical protein complement(1078058..1078444) Pseudomonas putida F1 5191346 YP_001266296.1 CDS Pput_0951 NC_009512.1 1078459 1078941 R hypothetical protein complement(1078459..1078941) Pseudomonas putida F1 5192035 YP_001266297.1 CDS Pput_0952 NC_009512.1 1079083 1080417 R hypothetical protein complement(1079083..1080417) Pseudomonas putida F1 5192036 YP_001266298.1 CDS Pput_0953 NC_009512.1 1080577 1082661 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase complement(1080577..1082661) Pseudomonas putida F1 5191729 YP_001266299.1 CDS Pput_0954 NC_009512.1 1082878 1083474 R PFAM: manganese and iron superoxide dismutase; superoxide dismutase complement(1082878..1083474) Pseudomonas putida F1 5191730 YP_001266300.1 CDS Pput_0955 NC_009512.1 1083746 1084345 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(1083746..1084345) Pseudomonas putida F1 5190326 YP_001266301.1 CDS Pput_0956 NC_009512.1 1084447 1085337 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1084447..1085337 Pseudomonas putida F1 5190327 YP_001266302.1 CDS Pput_0957 NC_009512.1 1085387 1086379 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1085387..1086379 Pseudomonas putida F1 5190927 YP_001266303.1 CDS Pput_0958 NC_009512.1 1086453 1087322 D hypothetical protein 1086453..1087322 Pseudomonas putida F1 5190928 YP_001266304.1 CDS Pput_0959 NC_009512.1 1087418 1088467 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(1087418..1088467) Pseudomonas putida F1 5190758 YP_001266305.1 CDS Pput_0960 NC_009512.1 1088485 1088787 R PFAM: regulatory protein, ArsR; regulatory protein ArsR complement(1088485..1088787) Pseudomonas putida F1 5190759 YP_001266306.1 CDS Pput_0961 NC_009512.1 1088938 1089522 D PFAM: protein of unknown function DUF479; hypothetical protein 1088938..1089522 Pseudomonas putida F1 5190768 YP_001266307.1 CDS Pput_0962 NC_009512.1 1089635 1090423 R PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1089635..1090423) Pseudomonas putida F1 5190769 YP_001266308.1 CDS Pput_0963 NC_009512.1 1090423 1091178 R hypothetical protein complement(1090423..1091178) Pseudomonas putida F1 5192526 YP_001266309.1 CDS Pput_0964 NC_009512.1 1091339 1092226 D hypothetical protein 1091339..1092226 Pseudomonas putida F1 5192527 YP_001266310.1 CDS Pput_0965 NC_009512.1 1092207 1092350 D hypothetical protein 1092207..1092350 Pseudomonas putida F1 5193976 YP_001266311.1 CDS Pput_0966 NC_009512.1 1092420 1093361 D PFAM: Auxin Efflux Carrier; auxin efflux carrier 1092420..1093361 Pseudomonas putida F1 5193977 YP_001266312.1 CDS Pput_0967 NC_009512.1 1093418 1094779 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1093418..1094779 Pseudomonas putida F1 5190376 YP_001266313.1 CDS Pput_0968 NC_009512.1 1094923 1095966 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; CaCA family Na(+)/Ca(+) antiporter complement(1094923..1095966) Pseudomonas putida F1 5190377 YP_001266314.1 CDS Pput_0969 NC_009512.1 1096027 1096401 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein A complement(1096027..1096401) Pseudomonas putida F1 5190929 YP_001266315.1 CDS gatB NC_009512.1 1096530 1097975 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1096530..1097975) Pseudomonas putida F1 5190930 YP_001266316.1 CDS gatA NC_009512.1 1097987 1099438 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1097987..1099438) Pseudomonas putida F1 5192698 YP_001266317.1 CDS gatC NC_009512.1 1099454 1099741 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1099454..1099741) Pseudomonas putida F1 5192699 YP_001266318.1 CDS Pput_0973 NC_009512.1 1099946 1100983 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1099946..1100983 Pseudomonas putida F1 5190515 YP_001266319.1 CDS Pput_0974 NC_009512.1 1101209 1102201 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1101209..1102201 Pseudomonas putida F1 5190516 YP_001266320.1 CDS Pput_0975 NC_009512.1 1102201 1102689 D PFAM: Rod shape-determining protein MreD; rod shape-determining protein MreD 1102201..1102689 Pseudomonas putida F1 5193694 YP_001266321.1 CDS Pput_0976 NC_009512.1 1102722 1103333 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1102722..1103333 Pseudomonas putida F1 5193927 YP_001266322.1 CDS Pput_0977 NC_009512.1 1103388 1104845 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease 1103388..1104845 Pseudomonas putida F1 5193928 YP_001266323.1 CDS Pput_0978 NC_009512.1 1104934 1108749 D hypothetical protein 1104934..1108749 Pseudomonas putida F1 5192345 YP_001266324.1 CDS Pput_0979 NC_009512.1 1108758 1109609 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1108758..1109609 Pseudomonas putida F1 5192346 YP_001266325.1 CDS Pput_0980 NC_009512.1 1109612 1111051 D PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1109612..1111051 Pseudomonas putida F1 5190706 YP_001266326.1 CDS Pput_0981 NC_009512.1 1111109 1111630 R PFAM: protein of unknown function DUF615; hypothetical protein complement(1111109..1111630) Pseudomonas putida F1 5190707 YP_001266327.1 CDS Pput_0982 NC_009512.1 1111740 1113086 D PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1111740..1113086 Pseudomonas putida F1 5193616 YP_001266328.1 CDS Pput_0983 NC_009512.1 1113332 1113733 D hypothetical protein 1113332..1113733 Pseudomonas putida F1 5193617 YP_001266329.1 CDS fumC NC_009512.1 1113723 1115102 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1113723..1115102 Pseudomonas putida F1 5190393 YP_001266330.1 CDS Pput_0985 NC_009512.1 1115479 1116204 D PFAM: manganese and iron superoxide dismutase; superoxide dismutase 1115479..1116204 Pseudomonas putida F1 5190394 YP_001266331.1 CDS Pput_0986 NC_009512.1 1116216 1117109 D PFAM: zinc/iron permease; zinc/iron permease 1116216..1117109 Pseudomonas putida F1 5192257 YP_001266332.1 CDS Pput_0987 NC_009512.1 1117137 1117409 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr complement(1117137..1117409) Pseudomonas putida F1 5192258 YP_001266333.1 CDS Pput_0988 NC_009512.1 1117428 1118282 R PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein complement(1117428..1118282) Pseudomonas putida F1 5193362 YP_001266334.1 CDS Pput_0989 NC_009512.1 1118285 1118749 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(1118285..1118749) Pseudomonas putida F1 5193363 YP_001266335.1 CDS Pput_0990 NC_009512.1 1118762 1119070 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(1118762..1119070) Pseudomonas putida F1 5192050 YP_001266336.1 CDS Pput_0991 NC_009512.1 1119150 1120643 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1119150..1120643) Pseudomonas putida F1 5192051 YP_001266337.1 CDS Pput_0992 NC_009512.1 1120819 1121544 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1120819..1121544) Pseudomonas putida F1 5192308 YP_001266338.1 CDS Pput_0993 NC_009512.1 1121545 1122069 R TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; cell envelope biogenesis YhbN complement(1121545..1122069) Pseudomonas putida F1 5192309 YP_001266339.1 CDS Pput_0994 NC_009512.1 1122056 1122628 R PFAM: protein of unknown function DUF1239; hypothetical protein complement(1122056..1122628) Pseudomonas putida F1 5190353 YP_001266340.1 CDS Pput_0995 NC_009512.1 1122637 1123161 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1122637..1123161) Pseudomonas putida F1 5190354 YP_001266341.1 CDS Pput_0996 NC_009512.1 1123174 1124148 R TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(1123174..1124148) Pseudomonas putida F1 5190774 YP_001266342.1 CDS Pput_0997 NC_009512.1 1124397 1125206 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1124397..1125206 Pseudomonas putida F1 5190775 YP_001266343.1 CDS Pput_0998 NC_009512.1 1125206 1126003 D PFAM: protein of unknown function DUF140; hypothetical protein 1125206..1126003 Pseudomonas putida F1 5192476 YP_001266344.1 CDS Pput_0999 NC_009512.1 1126003 1126485 D PFAM: Mammalian cell entry related domain protein; hypothetical protein 1126003..1126485 Pseudomonas putida F1 5192477 YP_001266345.1 CDS Pput_1000 NC_009512.1 1126495 1127142 D PFAM: toluene tolerance family protein; toluene tolerance family protein 1126495..1127142 Pseudomonas putida F1 5193251 YP_001266346.1 CDS Pput_1001 NC_009512.1 1127160 1127441 D hypothetical protein 1127160..1127441 Pseudomonas putida F1 5194809 YP_001266347.1 CDS Pput_1002 NC_009512.1 1127559 1127798 D PFAM: BolA family protein; BolA family protein 1127559..1127798 Pseudomonas putida F1 5194810 YP_001266348.1 CDS Pput_1003 NC_009512.1 1127822 1129087 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1127822..1129087 Pseudomonas putida F1 5193938 YP_001266349.1 CDS hisG NC_009512.1 1129179 1129814 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1129179..1129814 Pseudomonas putida F1 5193939 YP_001266350.1 CDS hisD NC_009512.1 1130101 1131426 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1130101..1131426 Pseudomonas putida F1 5193498 YP_001266351.1 CDS Pput_1006 NC_009512.1 1131429 1132475 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1131429..1132475 Pseudomonas putida F1 5193499 YP_001266352.1 CDS Pput_1007 NC_009512.1 1133009 1134193 R hypothetical protein complement(1133009..1134193) Pseudomonas putida F1 5191104 YP_001266353.1 CDS Pput_1008 NC_009512.1 1134333 1134983 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1134333..1134983 Pseudomonas putida F1 5191105 YP_001266354.1 CDS Pput_1009 NC_009512.1 1134997 1136277 D TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; cyanate transporter 1134997..1136277 Pseudomonas putida F1 5191998 YP_001266355.1 CDS Pput_1010 NC_009512.1 1136387 1136863 D hypothetical protein 1136387..1136863 Pseudomonas putida F1 5191999 YP_001266356.1 CDS Pput_1011 NC_009512.1 1136856 1137197 D PFAM: Excinuclease ABC, C subunit domain protein; GIY-YIG nuclease superfamily protein 1136856..1137197 Pseudomonas putida F1 5190260 YP_001266357.1 CDS Pput_1012 NC_009512.1 1137145 1138152 R PFAM: 37kDa nucleoid-associated protein; nucleoid-associated protein NdpA complement(1137145..1138152) Pseudomonas putida F1 5190261 YP_001266358.1 CDS Pput_1013 NC_009512.1 1138522 1138803 D PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1138522..1138803 Pseudomonas putida F1 5195493 YP_001266359.1 CDS Pput_1014 NC_009512.1 1138851 1139804 R PFAM: protein of unknown function DUF890; putative SAM-dependent methyltransferase complement(1138851..1139804) Pseudomonas putida F1 5195494 YP_001266360.1 CDS valS NC_009512.1 1139983 1142829 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1139983..1142829) Pseudomonas putida F1 5194903 YP_001266361.1 CDS Pput_1016 NC_009512.1 1143028 1143393 R hypothetical protein complement(1143028..1143393) Pseudomonas putida F1 5194904 YP_001266362.1 CDS Pput_1017 NC_009512.1 1143399 1143827 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1143399..1143827) Pseudomonas putida F1 5194166 YP_001266363.1 CDS Pput_1018 NC_009512.1 1143878 1145371 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1143878..1145371) Pseudomonas putida F1 5194167 YP_001266364.1 CDS Pput_1019 NC_009512.1 1145637 1146788 D PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1145637..1146788 Pseudomonas putida F1 5194856 YP_001266365.1 CDS Pput_1020 NC_009512.1 1146781 1147842 D PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1146781..1147842 Pseudomonas putida F1 5194857 YP_001266366.1 CDS Pput_1021 NC_009512.1 1147991 1148479 R PFAM: RDD domain containing protein; RDD domain-containing protein complement(1147991..1148479) Pseudomonas putida F1 5192054 YP_001266367.1 CDS Pput_1022 NC_009512.1 1148570 1148779 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(1148570..1148779) Pseudomonas putida F1 5192055 YP_001266368.1 CDS Pput_1023 NC_009512.1 1149137 1150258 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein complement(1149137..1150258) Pseudomonas putida F1 5194672 YP_001266369.1 CDS Pput_1024 NC_009512.1 1150286 1151662 R TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1150286..1151662) Pseudomonas putida F1 5194673 YP_001266370.1 CDS Pput_1025 NC_009512.1 1151769 1154624 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1151769..1154624) Pseudomonas putida F1 5193158 YP_001266371.1 CDS Pput_1026 NC_009512.1 1154636 1155019 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1154636..1155019) Pseudomonas putida F1 5195046 YP_001266372.1 CDS Pput_1027 NC_009512.1 1155325 1155792 R PFAM: DoxX family protein; DoxX family protein complement(1155325..1155792) Pseudomonas putida F1 5195047 YP_001266373.1 CDS Pput_1028 NC_009512.1 1155785 1156558 R hypothetical protein complement(1155785..1156558) Pseudomonas putida F1 5192770 YP_001266374.1 CDS Pput_1029 NC_009512.1 1156555 1157388 R PFAM: protein of unknown function DUF692; hypothetical protein complement(1156555..1157388) Pseudomonas putida F1 5192771 YP_001266375.1 CDS Pput_1030 NC_009512.1 1157405 1157692 R hypothetical protein complement(1157405..1157692) Pseudomonas putida F1 5193394 YP_001266376.1 CDS Pput_1031 NC_009512.1 1157917 1158501 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1157917..1158501 Pseudomonas putida F1 5193395 YP_001266377.1 CDS Pput_1032 NC_009512.1 1158491 1159132 D PFAM: protein of unknown function DUF1109; hypothetical protein 1158491..1159132 Pseudomonas putida F1 5192139 YP_001266378.1 CDS Pput_1033 NC_009512.1 1159194 1160399 R PFAM: sodium/glutamate symporter; sodium/glutamate symporter complement(1159194..1160399) Pseudomonas putida F1 5192140 YP_001266379.1 CDS Pput_1034 NC_009512.1 1160527 1162035 R PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: AAA ATPase; transcriptional regulator TyrR complement(1160527..1162035) Pseudomonas putida F1 5191012 YP_001266380.1 CDS Pput_1035 NC_009512.1 1162188 1162556 R hypothetical protein complement(1162188..1162556) Pseudomonas putida F1 5191013 YP_001266381.1 CDS Pput_1036 NC_009512.1 1162613 1163542 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1162613..1163542) Pseudomonas putida F1 5194021 YP_001266382.1 CDS Pput_1037 NC_009512.1 1163728 1164738 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(1163728..1164738) Pseudomonas putida F1 5194022 YP_001266383.1 CDS Pput_1038 NC_009512.1 1164808 1166061 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(1164808..1166061) Pseudomonas putida F1 5193084 YP_001266384.1 CDS Pput_1039 NC_009512.1 1166095 1167522 R TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter complement(1166095..1167522) Pseudomonas putida F1 5193085 YP_001266385.1 CDS Pput_1040 NC_009512.1 1167944 1169386 D TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 1167944..1169386 Pseudomonas putida F1 5193530 YP_001266386.1 CDS Pput_1041 NC_009512.1 1169366 1169779 R PFAM: protein of unknown function DUF454; hypothetical protein complement(1169366..1169779) Pseudomonas putida F1 5193531 YP_001266387.1 CDS Pput_1042 NC_009512.1 1169834 1170427 R PFAM: Haem oxygenase; heme oxygenase complement(1169834..1170427) Pseudomonas putida F1 5191616 YP_001266388.1 CDS Pput_1043 NC_009512.1 1170649 1173237 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(1170649..1173237) Pseudomonas putida F1 5191617 YP_001266389.1 CDS Pput_1044 NC_009512.1 1173363 1174325 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(1173363..1174325) Pseudomonas putida F1 5194726 YP_001266390.1 CDS Pput_1045 NC_009512.1 1174414 1174926 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(1174414..1174926) Pseudomonas putida F1 5194727 YP_001266391.1 CDS Pput_1046 NC_009512.1 1175301 1176251 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 complement(1175301..1176251) Pseudomonas putida F1 5194538 YP_001266392.1 CDS Pput_1047 NC_009512.1 1176630 1177631 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; type I glyceraldehyde-3-phosphate dehydrogenase complement(1176630..1177631) Pseudomonas putida F1 5194539 YP_001266393.1 CDS Pput_1048 NC_009512.1 1177896 1179722 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1177896..1179722 Pseudomonas putida F1 5194305 YP_001266394.1 CDS glk NC_009512.1 1179719 1180678 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1179719..1180678 Pseudomonas putida F1 5194306 YP_001266395.1 CDS Pput_1050 NC_009512.1 1180700 1181482 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1180700..1181482 Pseudomonas putida F1 5192650 YP_001266396.1 CDS Pput_1051 NC_009512.1 1181463 1182917 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1181463..1182917 Pseudomonas putida F1 5191987 YP_001266397.1 CDS Pput_1052 NC_009512.1 1183133 1184386 D PFAM: N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 1183133..1184386 Pseudomonas putida F1 5191988 YP_001266398.1 CDS Pput_1053 NC_009512.1 1184494 1185780 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1184494..1185780 Pseudomonas putida F1 5193988 YP_001266399.1 CDS Pput_1054 NC_009512.1 1185914 1186822 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1185914..1186822 Pseudomonas putida F1 5193989 YP_001266400.1 CDS Pput_1055 NC_009512.1 1186815 1187660 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1186815..1187660 Pseudomonas putida F1 5194660 YP_001266401.1 CDS Pput_1056 NC_009512.1 1187664 1188818 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1187664..1188818 Pseudomonas putida F1 5194661 YP_001266402.1 CDS Pput_1057 NC_009512.1 1188859 1190202 D PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1188859..1190202 Pseudomonas putida F1 5190176 YP_001266403.1 CDS Pput_1058 NC_009512.1 1190320 1191174 D PFAM: Aldose 1-epimerase; aldose 1-epimerase 1190320..1191174 Pseudomonas putida F1 5190177 YP_001266404.1 CDS Pput_1059 NC_009512.1 1191167 1192039 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(1191167..1192039) Pseudomonas putida F1 5193748 YP_001266405.1 CDS Pput_1060 NC_009512.1 1192242 1193711 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1192242..1193711 Pseudomonas putida F1 5193749 YP_001266406.1 CDS Pput_1061 NC_009512.1 1193698 1194411 D TIGRFAM: 6-phosphogluconolactonase; 6-phosphogluconolactonase 1193698..1194411 Pseudomonas putida F1 5190709 YP_001266407.1 CDS Pput_1062 NC_009512.1 1194429 1195109 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1194429..1195109 Pseudomonas putida F1 5190710 YP_001266408.1 CDS Pput_1063 NC_009512.1 1195329 1196048 D hypothetical protein 1195329..1196048 Pseudomonas putida F1 5191350 YP_001266409.1 CDS Pput_1064 NC_009512.1 1196053 1196781 D hypothetical protein 1196053..1196781 Pseudomonas putida F1 5191351 YP_001266410.1 CDS Pput_1065 NC_009512.1 1196844 1198517 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(1196844..1198517) Pseudomonas putida F1 5193862 YP_001266411.1 CDS Pput_1066 NC_009512.1 1198985 1199812 R PFAM: peptidase M23B; peptidase M23B complement(1198985..1199812) Pseudomonas putida F1 5193863 YP_001266412.1 CDS xseA NC_009512.1 1199816 1201207 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1199816..1201207) Pseudomonas putida F1 5194413 YP_001266413.1 CDS Pput_1068 NC_009512.1 1201401 1202279 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1201401..1202279) Pseudomonas putida F1 5194414 YP_001266414.1 CDS Pput_1069 NC_009512.1 1202377 1203132 D PFAM: protein of unknown function DUF81; hypothetical protein 1202377..1203132 Pseudomonas putida F1 5192872 YP_001266415.1 CDS Pput_1070 NC_009512.1 1203180 1203737 D hypothetical protein 1203180..1203737 Pseudomonas putida F1 5192873 YP_001266416.1 CDS Pput_1071 NC_009512.1 1203824 1205293 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1203824..1205293 Pseudomonas putida F1 5192817 YP_001266417.1 CDS guaA NC_009512.1 1205372 1206949 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1205372..1206949 Pseudomonas putida F1 5192818 YP_001266418.1 CDS Pput_1073 NC_009512.1 1207074 1208141 R PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase complement(1207074..1208141) Pseudomonas putida F1 5191697 YP_001266419.1 CDS Pput_1074 NC_009512.1 1208138 1209613 R hypothetical protein complement(1208138..1209613) Pseudomonas putida F1 5191698 YP_001266420.1 CDS Pput_1075 NC_009512.1 1209954 1211333 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 3 1209954..1211333 Pseudomonas putida F1 5195428 YP_001266421.1 CDS Pput_1076 NC_009512.1 1211333 1211812 D PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1211333..1211812 Pseudomonas putida F1 5194801 YP_001266422.1 CDS Pput_1077 NC_009512.1 1211904 1213361 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1211904..1213361) Pseudomonas putida F1 5194802 YP_001266423.1 CDS Pput_1078 NC_009512.1 1213699 1217598 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1213699..1217598 Pseudomonas putida F1 5190762 YP_001266424.1 CDS Pput_1079 NC_009512.1 1217602 1217913 D hypothetical protein 1217602..1217913 Pseudomonas putida F1 5190763 YP_001266425.1 CDS Pput_1080 NC_009512.1 1218017 1218778 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC complement(1218017..1218778) Pseudomonas putida F1 5191746 YP_001266426.1 CDS Pput_1081 NC_009512.1 1218775 1219065 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB complement(1218775..1219065) Pseudomonas putida F1 5191747 YP_001266427.1 CDS Pput_1082 NC_009512.1 1219065 1219298 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase complement(1219065..1219298) Pseudomonas putida F1 5192329 YP_001266428.1 CDS Pput_1083 NC_009512.1 1219444 1220409 D PFAM: General secretion pathway protein K; general secretion pathway protein K 1219444..1220409 Pseudomonas putida F1 5192330 YP_001266429.1 CDS Pput_1084 NC_009512.1 1220539 1222614 R PFAM: protein of unknown function DUF839; hypothetical protein complement(1220539..1222614) Pseudomonas putida F1 5191221 YP_001266430.1 CDS Pput_1085 NC_009512.1 1222839 1224479 D lipoprotein UxpA 1222839..1224479 Pseudomonas putida F1 5191222 YP_001266431.1 CDS Pput_1086 NC_009512.1 1224479 1224901 D hypothetical protein 1224479..1224901 Pseudomonas putida F1 5194844 YP_001266432.1 CDS Pput_1087 NC_009512.1 1224905 1226659 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 1224905..1226659 Pseudomonas putida F1 5194845 YP_001266433.1 CDS Pput_1088 NC_009512.1 1226659 1228107 D PFAM: type II secretion system protein E; type II secretion system protein E 1226659..1228107 Pseudomonas putida F1 5190558 YP_001266434.1 CDS Pput_1089 NC_009512.1 1228111 1229313 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; general secretion pathway protein F 1228111..1229313 Pseudomonas putida F1 5190559 YP_001266435.1 CDS Pput_1090 NC_009512.1 1229331 1229765 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 1229331..1229765 Pseudomonas putida F1 5194728 YP_001266436.1 CDS Pput_1091 NC_009512.1 1229768 1230199 D TIGRFAM: general secretion pathway protein H; general secretion pathway protein H 1229768..1230199 Pseudomonas putida F1 5194729 YP_001266437.1 CDS Pput_1092 NC_009512.1 1230196 1230564 D PFAM: type II secretion system protein I/J; type II secretion system protein I/J 1230196..1230564 Pseudomonas putida F1 5190174 YP_001266438.1 CDS Pput_1093 NC_009512.1 1230561 1231151 D hypothetical protein 1230561..1231151 Pseudomonas putida F1 5190175 YP_001266439.1 CDS Pput_1094 NC_009512.1 1231148 1232224 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; general secretion pathway protein L 1231148..1232224 Pseudomonas putida F1 5192819 YP_001266440.1 CDS Pput_1095 NC_009512.1 1232221 1232607 D hypothetical protein 1232221..1232607 Pseudomonas putida F1 5192820 YP_001266441.1 CDS Pput_1096 NC_009512.1 1232604 1233266 D hypothetical protein 1232604..1233266 Pseudomonas putida F1 5190629 YP_001266442.1 CDS Pput_1097 NC_009512.1 1233560 1234321 R PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; FAD-binding 9, siderophore-interacting domain-containing protein complement(1233560..1234321) Pseudomonas putida F1 5190630 YP_001266443.1 CDS Pput_1098 NC_009512.1 1234314 1234859 R PFAM: transcriptional regulator PadR family protein; PadR-like family transcriptional regulator complement(1234314..1234859) Pseudomonas putida F1 5193334 YP_001266444.1 CDS Pput_1099 NC_009512.1 1234949 1238098 R membrane carboxypeptidase complement(1234949..1238098) Pseudomonas putida F1 5193335 YP_001266445.1 CDS Pput_1100 NC_009512.1 1238487 1239905 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1238487..1239905 Pseudomonas putida F1 5193691 YP_001266446.1 CDS Pput_1101 NC_009512.1 1239942 1241561 R PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase complement(1239942..1241561) Pseudomonas putida F1 5191813 YP_001266447.1 CDS Pput_1102 NC_009512.1 1241844 1246124 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(1241844..1246124) Pseudomonas putida F1 5191814 YP_001266448.1 CDS Pput_1103 NC_009512.1 1246261 1246674 D PFAM: NUDIX hydrolase; NUDIX hydrolase 1246261..1246674 Pseudomonas putida F1 5193452 YP_001266449.1 CDS Pput_1104 NC_009512.1 1246658 1247575 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1246658..1247575) Pseudomonas putida F1 5193453 YP_001266450.1 CDS Pput_1105 NC_009512.1 1247771 1248766 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1247771..1248766 Pseudomonas putida F1 5193028 YP_001266451.1 CDS Pput_1106 NC_009512.1 1248884 1249219 R PFAM: GlpM family protein; GlpM family protein complement(1248884..1249219) Pseudomonas putida F1 5193029 YP_001266452.1 CDS Pput_1107 NC_009512.1 1249243 1250571 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator complement(1249243..1250571) Pseudomonas putida F1 5192826 YP_001266453.1 CDS Pput_1108 NC_009512.1 1250568 1252472 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(1250568..1252472) Pseudomonas putida F1 5192827 YP_001266454.1 CDS Pput_1109 NC_009512.1 1252541 1253275 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1252541..1253275) Pseudomonas putida F1 5192396 YP_001266455.1 CDS Pput_1110 NC_009512.1 1253272 1253943 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(1253272..1253943) Pseudomonas putida F1 5192397 YP_001266456.1 CDS Pput_1111 NC_009512.1 1253944 1254690 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(1253944..1254690) Pseudomonas putida F1 5190605 YP_001266457.1 CDS Pput_1112 NC_009512.1 1254836 1255753 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1254836..1255753) Pseudomonas putida F1 5190606 YP_001266458.1 CDS Pput_1113 NC_009512.1 1256086 1260405 D PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein 1256086..1260405 Pseudomonas putida F1 5195426 YP_001266459.1 CDS glpD NC_009512.1 1260433 1261971 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(1260433..1261971) Pseudomonas putida F1 5195427 YP_001266460.1 CDS Pput_1115 NC_009512.1 1262264 1263124 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator complement(1262264..1263124) Pseudomonas putida F1 5194156 YP_001266461.1 CDS glpK NC_009512.1 1263121 1264620 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(1263121..1264620) Pseudomonas putida F1 5194157 YP_001266462.1 CDS Pput_1117 NC_009512.1 1264672 1265523 R TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; MIP family channel protein complement(1264672..1265523) Pseudomonas putida F1 5194652 YP_001266463.1 CDS Pput_1118 NC_009512.1 1265826 1266296 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 1265826..1266296 Pseudomonas putida F1 5194653 YP_001266464.1 CDS Pput_1119 NC_009512.1 1266417 1267526 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(1266417..1267526) Pseudomonas putida F1 5191340 YP_001266465.1 CDS Pput_1120 NC_009512.1 1267523 1268443 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1267523..1268443) Pseudomonas putida F1 5191341 YP_001266466.1 CDS Pput_1121 NC_009512.1 1268818 1270926 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region 1268818..1270926 Pseudomonas putida F1 5192681 YP_001266467.1 CDS Pput_1122 NC_009512.1 1270895 1271353 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 1270895..1271353 Pseudomonas putida F1 5192682 YP_001266468.1 CDS Pput_1123 NC_009512.1 1271411 1271884 R TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin complement(1271411..1271884) Pseudomonas putida F1 5194461 YP_001266469.1 CDS Pput_1124 NC_009512.1 1272084 1272302 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein complement(1272084..1272302) Pseudomonas putida F1 5194462 YP_001266470.1 CDS Pput_1125 NC_009512.1 1272527 1273129 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 1272527..1273129 Pseudomonas putida F1 5195138 YP_001266471.1 CDS Pput_1126 NC_009512.1 1273289 1273963 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1273289..1273963) Pseudomonas putida F1 5191610 YP_001266472.1 CDS Pput_1127 NC_009512.1 1273960 1275006 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1273960..1275006) Pseudomonas putida F1 5191611 YP_001266473.1 CDS Pput_1128 NC_009512.1 1275137 1276078 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1275137..1276078 Pseudomonas putida F1 5195208 YP_001266474.1 CDS Pput_1129 NC_009512.1 1276671 1277888 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1276671..1277888 Pseudomonas putida F1 5195209 YP_001266475.1 CDS Pput_1130 NC_009512.1 1277956 1278438 R hypothetical protein complement(1277956..1278438) Pseudomonas putida F1 5194432 YP_001266476.1 CDS Pput_1131 NC_009512.1 1278720 1279430 D PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 1278720..1279430 Pseudomonas putida F1 5194433 YP_001266477.1 CDS Pput_1132 NC_009512.1 1279501 1279677 R hypothetical protein complement(1279501..1279677) Pseudomonas putida F1 5190385 YP_001266478.1 CDS Pput_1133 NC_009512.1 1279782 1280789 R TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(1279782..1280789) Pseudomonas putida F1 5190386 YP_001266479.1 CDS Pput_1134 NC_009512.1 1280942 1281544 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; RnfABCDGE type electron transport complex subunit G complement(1280942..1281544) Pseudomonas putida F1 5191490 YP_001266480.1 CDS Pput_1135 NC_009512.1 1281541 1282512 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D complement(1281541..1282512) Pseudomonas putida F1 5191491 YP_001266481.1 CDS Pput_1136 NC_009512.1 1282509 1283057 R NADH:ubiquinone oxidoreductase subunit RnfA-like protein complement(1282509..1283057) Pseudomonas putida F1 5192941 YP_001266482.1 CDS metG NC_009512.1 1283164 1285296 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1283164..1285296) Pseudomonas putida F1 5192942 YP_001266483.1 CDS Pput_1138 NC_009512.1 1285362 1286456 D PFAM: protein of unknown function DUF59; hypothetical protein 1285362..1286456 Pseudomonas putida F1 5191926 YP_001266484.1 CDS Pput_1139 NC_009512.1 1286708 1286917 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(1286708..1286917) Pseudomonas putida F1 5191927 YP_001266485.1 CDS dcd NC_009512.1 1287245 1287811 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1287245..1287811 Pseudomonas putida F1 5194356 YP_001266486.1 CDS Pput_1141 NC_009512.1 1287906 1288133 D hypothetical protein 1287906..1288133 Pseudomonas putida F1 5194357 YP_001266487.1 CDS Pput_1142 NC_009512.1 1288140 1288790 R ICC-like phosphoesterase complement(1288140..1288790) Pseudomonas putida F1 5191098 YP_001266488.1 CDS Pput_1143 NC_009512.1 1288787 1291237 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(1288787..1291237) Pseudomonas putida F1 5191099 YP_001266489.1 CDS Pput_1144 NC_009512.1 1291305 1292420 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(1291305..1292420) Pseudomonas putida F1 5192986 YP_001266490.1 CDS Pput_1145 NC_009512.1 1292534 1294192 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1292534..1294192) Pseudomonas putida F1 5192987 YP_001266491.1 CDS Pput_1146 NC_009512.1 1294189 1295205 R RNA procession exonuclease-like protein complement(1294189..1295205) Pseudomonas putida F1 5192457 YP_001266492.1 CDS Pput_1147 NC_009512.1 1295332 1297773 R PFAM: peptidase S45, penicillin amidase; penicillin amidase complement(1295332..1297773) Pseudomonas putida F1 5192458 YP_001266493.1 CDS Pput_1148 NC_009512.1 1297877 1299217 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(1297877..1299217) Pseudomonas putida F1 5192137 YP_001266494.1 CDS Pput_1149 NC_009512.1 1299399 1300103 D Serine O-acetyltransferase 1299399..1300103 Pseudomonas putida F1 5192138 YP_001266495.1 CDS Pput_1150 NC_009512.1 1300100 1300888 D related to alanyl-tRNA synthetase HxxxH domain; synthetase 1300100..1300888 Pseudomonas putida F1 5193418 YP_001266496.1 CDS Pput_1151 NC_009512.1 1300885 1302096 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1300885..1302096 Pseudomonas putida F1 5195159 YP_001266497.1 CDS Pput_1152 NC_009512.1 1302093 1302995 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1302093..1302995 Pseudomonas putida F1 5195160 YP_001266498.1 CDS Pput_1153 NC_009512.1 1303163 1303360 R PFAM: SEC-C motif domain protein; SecC motif-containing protein complement(1303163..1303360) Pseudomonas putida F1 5190211 YP_001266499.1 CDS Pput_1154 NC_009512.1 1303368 1303871 R SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein complement(1303368..1303871) Pseudomonas putida F1 5190212 YP_001266500.1 CDS Pput_1155 NC_009512.1 1303844 1304320 R PFAM: SEC-C motif domain protein; hypothetical protein complement(1303844..1304320) Pseudomonas putida F1 5193887 YP_001266501.1 CDS Pput_1156 NC_009512.1 1304323 1304817 R hypothetical protein complement(1304323..1304817) Pseudomonas putida F1 5193888 YP_001266502.1 CDS Pput_1157 NC_009512.1 1304977 1305669 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1304977..1305669 Pseudomonas putida F1 5195204 YP_001266503.1 CDS Pput_1158 NC_009512.1 1305759 1306478 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1305759..1306478 Pseudomonas putida F1 5195205 YP_001266504.1 CDS Pput_1159 NC_009512.1 1306577 1306852 D PFAM: protein of unknown function DUF1145; hypothetical protein 1306577..1306852 Pseudomonas putida F1 5192110 YP_001266505.1 CDS Pput_1160 NC_009512.1 1306975 1307439 R hypothetical protein complement(1306975..1307439) Pseudomonas putida F1 5192111 YP_001266506.1 CDS dinG NC_009512.1 1307538 1309682 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1307538..1309682 Pseudomonas putida F1 5192840 YP_001266507.1 CDS Pput_1162 NC_009512.1 1309762 1311996 D beta-agarase 1309762..1311996 Pseudomonas putida F1 5192841 YP_001266508.1 CDS Pput_1163 NC_009512.1 1312007 1313275 D PFAM: beta-lactamase; beta-lactamase 1312007..1313275 Pseudomonas putida F1 5193785 YP_001266509.1 CDS Pput_1164 NC_009512.1 1313375 1314352 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1313375..1314352 Pseudomonas putida F1 5193786 YP_001266510.1 CDS Pput_1165 NC_009512.1 1314372 1315019 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1314372..1315019 Pseudomonas putida F1 5191831 YP_001266511.1 CDS Pput_1166 NC_009512.1 1315059 1315292 R hypothetical protein complement(1315059..1315292) Pseudomonas putida F1 5191832 YP_001266512.1 CDS Pput_1167 NC_009512.1 1315440 1315904 D PFAM: 17 kDa surface antigen; 17 kDa surface antigen 1315440..1315904 Pseudomonas putida F1 5194232 YP_001266513.1 CDS nhaA NC_009512.1 1315974 1317167 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(1315974..1317167) Pseudomonas putida F1 5194233 YP_001266514.1 CDS Pput_1169 NC_009512.1 1317445 1319076 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1317445..1319076) Pseudomonas putida F1 5191296 YP_001266515.1 CDS Pput_1170 NC_009512.1 1319156 1319830 R hypothetical protein complement(1319156..1319830) Pseudomonas putida F1 5191297 YP_001266516.1 CDS Pput_1171 NC_009512.1 1319919 1320620 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1319919..1320620) Pseudomonas putida F1 5190334 YP_001266517.1 CDS livG NC_009512.1 1320621 1321388 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(1320621..1321388) Pseudomonas putida F1 5190335 YP_001266518.1 CDS livM NC_009512.1 1321385 1322641 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease complement(1321385..1322641) Pseudomonas putida F1 5193542 YP_001266519.1 CDS Pput_1174 NC_009512.1 1322638 1323561 R PFAM: inner-membrane translocator; inner-membrane translocator complement(1322638..1323561) Pseudomonas putida F1 5193543 YP_001266520.1 CDS Pput_1175 NC_009512.1 1323747 1324862 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1323747..1324862) Pseudomonas putida F1 5193389 YP_001266521.1 CDS Pput_1176 NC_009512.1 1325223 1325534 D hypothetical protein 1325223..1325534 Pseudomonas putida F1 5193528 YP_001266522.1 CDS Pput_1177 NC_009512.1 1325727 1326614 D PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1325727..1326614 Pseudomonas putida F1 5193529 YP_001266523.1 CDS Pput_1178 NC_009512.1 1326514 1328778 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase complement(1326514..1328778) Pseudomonas putida F1 5194213 YP_001266524.1 CDS Pput_1179 NC_009512.1 1329055 1331901 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(1329055..1331901) Pseudomonas putida F1 5194214 YP_001266525.1 CDS Pput_1180 NC_009512.1 1332052 1332747 D hypothetical protein 1332052..1332747 Pseudomonas putida F1 5192530 YP_001266526.1 CDS Pput_1181 NC_009512.1 1332811 1333140 D hypothetical protein 1332811..1333140 Pseudomonas putida F1 5192531 YP_001266527.1 CDS Pput_1182 NC_009512.1 1333208 1333369 D hypothetical protein 1333208..1333369 Pseudomonas putida F1 5194943 YP_001266528.1 CDS Pput_1183 NC_009512.1 1333505 1333621 D hypothetical protein 1333505..1333621 Pseudomonas putida F1 5194944 YP_001266529.1 CDS Pput_1184 NC_009512.1 1333827 1335815 D PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein 1333827..1335815 Pseudomonas putida F1 5194109 YP_001266530.1 CDS Pput_1185 NC_009512.1 1335802 1336008 D PFAM: protein of unknown function DUF1656; hypothetical protein 1335802..1336008 Pseudomonas putida F1 5194110 YP_001266531.1 CDS Pput_1186 NC_009512.1 1336021 1336890 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 1336021..1336890 Pseudomonas putida F1 5194387 YP_001266532.1 CDS Pput_1187 NC_009512.1 1337114 1337452 D hypothetical protein 1337114..1337452 Pseudomonas putida F1 5194388 YP_001266533.1 CDS Pput_1188 NC_009512.1 1337467 1340052 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(1337467..1340052) Pseudomonas putida F1 5195165 YP_001266534.1 CDS Pput_1189 NC_009512.1 1340104 1341177 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; diguanylate cyclase complement(1340104..1341177) Pseudomonas putida F1 5195166 YP_001266535.1 CDS Pput_1190 NC_009512.1 1341459 1342355 R formate/nitrate transporter complement(1341459..1342355) Pseudomonas putida F1 5190277 YP_001266536.1 CDS Pput_1191 NC_009512.1 1348598 1350241 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1348598..1350241 Pseudomonas putida F1 5194020 YP_001266537.1 CDS Pput_1192 NC_009512.1 1350679 1351575 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1350679..1351575 Pseudomonas putida F1 5194018 YP_001266538.1 CDS Pput_1193 NC_009512.1 1351586 1352740 D hypothetical protein 1351586..1352740 Pseudomonas putida F1 5194019 YP_001266539.1 CDS Pput_1194 NC_009512.1 1352737 1353726 D PFAM: Asparaginase/glutaminase; asparaginase/glutaminase 1352737..1353726 Pseudomonas putida F1 5192377 YP_001266540.1 CDS Pput_1195 NC_009512.1 1353818 1354369 D TIGRFAM: yecA family protein; yecA family protein 1353818..1354369 Pseudomonas putida F1 5192378 YP_001266541.1 CDS Pput_1196 NC_009512.1 1354544 1355173 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 1354544..1355173 Pseudomonas putida F1 5190766 YP_001266542.1 CDS Pput_1197 NC_009512.1 1355201 1357237 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1355201..1357237 Pseudomonas putida F1 5190767 YP_001266543.1 CDS Pput_1198 NC_009512.1 1357346 1358242 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1357346..1358242 Pseudomonas putida F1 5191150 YP_001266544.1 CDS Pput_1199 NC_009512.1 1358316 1359185 R PFAM: Aldose 1-epimerase; aldose 1-epimerase complement(1358316..1359185) Pseudomonas putida F1 5191151 YP_001266545.1 CDS Pput_1200 NC_009512.1 1359210 1360133 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(1359210..1360133) Pseudomonas putida F1 5192488 YP_001266546.1 CDS Pput_1201 NC_009512.1 1360188 1361468 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1360188..1361468) Pseudomonas putida F1 5190524 YP_001266547.1 CDS Pput_1202 NC_009512.1 1361469 1361996 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1361469..1361996) Pseudomonas putida F1 5190525 YP_001266548.1 CDS Pput_1203 NC_009512.1 1362063 1363034 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1362063..1363034) Pseudomonas putida F1 5194813 YP_001266549.1 CDS Pput_1204 NC_009512.1 1363099 1363980 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(1363099..1363980) Pseudomonas putida F1 5194814 YP_001266550.1 CDS Pput_1205 NC_009512.1 1364003 1364809 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(1364003..1364809) Pseudomonas putida F1 5190726 YP_001266551.1 CDS Pput_1206 NC_009512.1 1365367 1366605 R PFAM: outer membrane porin; outer membrane porin complement(1365367..1366605) Pseudomonas putida F1 5190727 YP_001266552.1 CDS Pput_1207 NC_009512.1 1367364 1367603 D Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; bifunctional antitoxin/transcriptional repressor RelB 1367364..1367603 Pseudomonas putida F1 5194002 YP_001266553.1 CDS Pput_1208 NC_009512.1 1367634 1367879 D PFAM: plasmid stabilization system; plasmid stabilization system protein 1367634..1367879 Pseudomonas putida F1 5194003 YP_001266554.1 CDS Pput_1209 NC_009512.1 1368317 1369564 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(1368317..1369564) Pseudomonas putida F1 5195070 YP_001266555.1 CDS Pput_1210 NC_009512.1 1370766 1373645 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1370766..1373645) Pseudomonas putida F1 5195071 YP_001266556.1 CDS Pput_1211 NC_009512.1 1374393 1375091 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1374393..1375091 Pseudomonas putida F1 5194354 YP_001266557.1 CDS Pput_1212 NC_009512.1 1375088 1376695 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1375088..1376695 Pseudomonas putida F1 5194355 YP_001266558.1 CDS Pput_1213 NC_009512.1 1376699 1377400 R PFAM: 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase complement(1376699..1377400) Pseudomonas putida F1 5195303 YP_001266559.1 CDS Pput_1214 NC_009512.1 1377648 1378439 R PFAM: dienelactone hydrolase; dienelactone hydrolase complement(1377648..1378439) Pseudomonas putida F1 5195304 YP_001266560.1 CDS Pput_1215 NC_009512.1 1378569 1379174 D outer membrane protein H1 1378569..1379174 Pseudomonas putida F1 5195511 YP_001266561.1 CDS Pput_1216 NC_009512.1 1379369 1380046 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1379369..1380046 Pseudomonas putida F1 5195512 YP_001266562.1 CDS Pput_1217 NC_009512.1 1380043 1381389 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1380043..1381389 Pseudomonas putida F1 5191628 YP_001266563.1 CDS Pput_1218 NC_009512.1 1381739 1383061 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1381739..1383061 Pseudomonas putida F1 5191629 YP_001266564.1 CDS Pput_1219 NC_009512.1 1383244 1383402 D hypothetical protein 1383244..1383402 Pseudomonas putida F1 5192129 YP_001266565.1 CDS Pput_1220 NC_009512.1 1383484 1384176 R PFAM: protein of unknown function UPF0066; hypothetical protein complement(1383484..1384176) Pseudomonas putida F1 5192130 YP_001266566.1 CDS Pput_1221 NC_009512.1 1384183 1384644 R PFAM: protein of unknown function DUF1456; hypothetical protein complement(1384183..1384644) Pseudomonas putida F1 5194614 YP_001266567.1 CDS Pput_1222 NC_009512.1 1384694 1385437 R PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(1384694..1385437) Pseudomonas putida F1 5194615 YP_001266568.1 CDS Pput_1223 NC_009512.1 1385524 1385979 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1385524..1385979) Pseudomonas putida F1 5191604 YP_001266569.1 CDS Pput_1224 NC_009512.1 1386274 1386828 D hypothetical protein 1386274..1386828 Pseudomonas putida F1 5191605 YP_001266570.1 CDS Pput_1225 NC_009512.1 1387026 1387871 D hypothetical protein 1387026..1387871 Pseudomonas putida F1 5195531 YP_001266571.1 CDS Pput_1226 NC_009512.1 1387868 1389586 D hypothetical protein 1387868..1389586 Pseudomonas putida F1 5194124 YP_001266572.1 CDS Pput_1227 NC_009512.1 1389641 1390390 D hypothetical protein 1389641..1390390 Pseudomonas putida F1 5194125 YP_001266573.1 CDS rimO NC_009512.1 1390462 1391793 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(1390462..1391793) Pseudomonas putida F1 5195005 YP_001266574.1 CDS Pput_1229 NC_009512.1 1392029 1393939 D PFAM: K+ potassium transporter; K+ potassium transporter 1392029..1393939 Pseudomonas putida F1 5195006 YP_001266575.1 CDS Pput_1230 NC_009512.1 1393988 1395280 R PFAM: virulence factor family protein; virulence factor family protein complement(1393988..1395280) Pseudomonas putida F1 5195243 YP_001266576.1 CDS Pput_1231 NC_009512.1 1395280 1397922 R PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; hypothetical protein complement(1395280..1397922) Pseudomonas putida F1 5195244 YP_001266577.1 CDS Pput_1232 NC_009512.1 1398898 1399962 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1398898..1399962 Pseudomonas putida F1 5190188 YP_001266578.1 CDS Pput_1233 NC_009512.1 1399989 1400942 R hypothetical protein complement(1399989..1400942) Pseudomonas putida F1 5194832 YP_001266579.1 CDS Pput_1234 NC_009512.1 1400963 1402678 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1400963..1402678) Pseudomonas putida F1 5193829 YP_001266580.1 CDS Pput_1235 NC_009512.1 1402839 1404104 R PFAM: outer membrane porin; outer membrane porin complement(1402839..1404104) Pseudomonas putida F1 5193830 YP_001266581.1 CDS Pput_1236 NC_009512.1 1404796 1405215 D PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1404796..1405215 Pseudomonas putida F1 5194370 YP_001266582.1 CDS Pput_1237 NC_009512.1 1405217 1405423 D PFAM: SlyX family protein; hypothetical protein 1405217..1405423 Pseudomonas putida F1 5194371 YP_001266583.1 CDS Pput_1238 NC_009512.1 1405545 1406138 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(1405545..1406138) Pseudomonas putida F1 5192112 YP_001266584.1 CDS Pput_1239 NC_009512.1 1406419 1406892 D PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein 1406419..1406892 Pseudomonas putida F1 5192113 YP_001266585.1 CDS Pput_1240 NC_009512.1 1407279 1407608 D hypothetical protein 1407279..1407608 Pseudomonas putida F1 5194451 YP_001266586.1 CDS Pput_1241 NC_009512.1 1407703 1407924 D TIGRFAM: putative regulatory protein, FmdB family; FmdB family regulatory protein 1407703..1407924 Pseudomonas putida F1 5194452 YP_001266587.1 CDS aspS NC_009512.1 1408018 1409793 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1408018..1409793 Pseudomonas putida F1 5194972 YP_001266588.1 CDS Pput_1243 NC_009512.1 1409908 1410654 D PFAM: protein of unknown function DUF28; hypothetical protein 1409908..1410654 Pseudomonas putida F1 5194973 YP_001266589.1 CDS ruvC NC_009512.1 1410840 1411364 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1410840..1411364 Pseudomonas putida F1 5194023 YP_001266590.1 CDS ruvA NC_009512.1 1411474 1412091 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1411474..1412091 Pseudomonas putida F1 5194024 YP_001266591.1 CDS ruvB NC_009512.1 1412088 1413134 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1412088..1413134 Pseudomonas putida F1 5193685 YP_001266592.1 CDS Pput_1247 NC_009512.1 1413260 1413712 D TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; Pol-Pal system-associated acyl-CoA thioesterase 1413260..1413712 Pseudomonas putida F1 5193686 YP_001266593.1 CDS Pput_1248 NC_009512.1 1413715 1414410 D TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; Tol-Pal system protein TolQ 1413715..1414410 Pseudomonas putida F1 5191606 YP_001266594.1 CDS Pput_1249 NC_009512.1 1414425 1414877 D TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport TolR 1414425..1414877 Pseudomonas putida F1 5191607 YP_001266595.1 CDS Pput_1250 NC_009512.1 1414877 1415995 D TIGRFAM: TonB family protein; Tol-Pal system, TolA; PFAM: TolA family protein; Tol-Pal system protein TolA 1414877..1415995 Pseudomonas putida F1 5190272 YP_001266596.1 CDS tolB NC_009512.1 1416022 1417293 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1416022..1417293 Pseudomonas putida F1 5195525 YP_001266597.1 CDS Pput_1252 NC_009512.1 1417348 1417848 D TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 1417348..1417848 Pseudomonas putida F1 5195526 YP_001266598.1 CDS Pput_1253 NC_009512.1 1417855 1418661 D TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; Tol-Pal system protein YbgF 1417855..1418661 Pseudomonas putida F1 5192010 YP_001266599.1 CDS Pput_1254 NC_009512.1 1418830 1419477 D PFAM: Radical SAM domain protein; radical SAM domain-containing protein 1418830..1419477 Pseudomonas putida F1 5192011 YP_001266600.1 CDS Pput_1255 NC_009512.1 1419495 1420169 D TIGRFAM: exsB protein; PFAM: ExsB family protein; exsB protein 1419495..1420169 Pseudomonas putida F1 5192657 YP_001266601.1 CDS Pput_1256 NC_009512.1 1420401 1421360 R PFAM: cation efflux protein; cation efflux protein complement(1420401..1421360) Pseudomonas putida F1 5194900 YP_001266602.1 CDS Pput_1257 NC_009512.1 1421503 1423569 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1421503..1423569) Pseudomonas putida F1 5191205 YP_001266603.1 CDS Pput_1258 NC_009512.1 1423636 1424988 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1423636..1424988) Pseudomonas putida F1 5191206 YP_001266604.1 CDS Pput_1259 NC_009512.1 1425436 1426944 D PFAM: protein of unknown function DUF945; hypothetical protein 1425436..1426944 Pseudomonas putida F1 5194008 YP_001266605.1 CDS Pput_1260 NC_009512.1 1427219 1428277 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1427219..1428277 Pseudomonas putida F1 5194009 YP_001266606.1 CDS Pput_1261 NC_009512.1 1428552 1429502 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 complement(1428552..1429502) Pseudomonas putida F1 5191638 YP_001266607.1 CDS Pput_1262 NC_009512.1 1429760 1431196 R PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p complement(1429760..1431196) Pseudomonas putida F1 5191639 YP_001266608.1 CDS Pput_1263 NC_009512.1 1431319 1431558 D PFAM: SirA family protein; SirA family protein 1431319..1431558 Pseudomonas putida F1 5194770 YP_001266609.1 CDS Pput_1264 NC_009512.1 1431579 1432649 D PFAM: protein of unknown function UPF0118; hypothetical protein 1431579..1432649 Pseudomonas putida F1 5194771 YP_001266610.1 CDS Pput_1265 NC_009512.1 1432767 1433240 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase complement(1432767..1433240) Pseudomonas putida F1 5195424 YP_001266611.1 CDS Pput_1266 NC_009512.1 1433252 1433812 R glycine cleavage system regulatory protein-like protein complement(1433252..1433812) Pseudomonas putida F1 5195425 YP_001266612.1 CDS Pput_1267 NC_009512.1 1434072 1434959 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1434072..1434959 Pseudomonas putida F1 5194352 YP_001266613.1 CDS Pput_1268 NC_009512.1 1434975 1436096 D hypothetical protein 1434975..1436096 Pseudomonas putida F1 5194353 YP_001266614.1 CDS Pput_1269 NC_009512.1 1436097 1436855 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1436097..1436855 Pseudomonas putida F1 5195033 YP_001266615.1 CDS Pput_1270 NC_009512.1 1436886 1437596 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1436886..1437596 Pseudomonas putida F1 5195034 YP_001266616.1 CDS Pput_1271 NC_009512.1 1437876 1438226 R TIGRFAM: Addiction module antidote protein, HI1420; putative transcriptional regulator complement(1437876..1438226) Pseudomonas putida F1 5192285 YP_001266617.1 CDS Pput_1272 NC_009512.1 1438880 1439152 R hypothetical protein complement(1438880..1439152) Pseudomonas putida F1 5191916 YP_001266618.1 CDS Pput_1273 NC_009512.1 1439227 1439490 R hypothetical protein complement(1439227..1439490) Pseudomonas putida F1 5191389 YP_001266619.1 CDS Pput_1274 NC_009512.1 1440131 1440991 D PFAM: 17 kDa surface antigen; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; SH3 type 3 domain-containing protein 1440131..1440991 Pseudomonas putida F1 5191390 YP_001266620.1 CDS Pput_1275 NC_009512.1 1441000 1442928 D hypothetical protein 1441000..1442928 Pseudomonas putida F1 5190534 YP_001266621.1 CDS Pput_1276 NC_009512.1 1442939 1444147 D hypothetical protein 1442939..1444147 Pseudomonas putida F1 5193972 YP_001266622.1 CDS Pput_1277 NC_009512.1 1444243 1444860 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(1444243..1444860) Pseudomonas putida F1 5193973 YP_001266623.1 CDS Pput_1278 NC_009512.1 1445051 1445242 D hypothetical protein 1445051..1445242 Pseudomonas putida F1 5191420 YP_001266624.1 CDS Pput_1279 NC_009512.1 1445570 1447207 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1445570..1447207 Pseudomonas putida F1 5191421 YP_001266625.1 CDS Pput_1280 NC_009512.1 1447340 1447675 R PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator complement(1447340..1447675) Pseudomonas putida F1 5190972 YP_001266626.1 CDS Pput_1281 NC_009512.1 1447725 1448816 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1447725..1448816 Pseudomonas putida F1 5190973 YP_001266627.1 CDS Pput_1282 NC_009512.1 1448940 1450187 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1448940..1450187) Pseudomonas putida F1 5193191 YP_001266628.1 CDS Pput_1283 NC_009512.1 1450190 1451767 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(1450190..1451767) Pseudomonas putida F1 5193192 YP_001266629.1 CDS Pput_1284 NC_009512.1 1451919 1452866 R PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(1451919..1452866) Pseudomonas putida F1 5190728 YP_001266630.1 CDS Pput_1285 NC_009512.1 1452913 1453839 R PFAM: proline racemase; proline racemase complement(1452913..1453839) Pseudomonas putida F1 5190729 YP_001266631.1 CDS Pput_1286 NC_009512.1 1453863 1455476 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1453863..1455476) Pseudomonas putida F1 5194473 YP_001266632.1 CDS Pput_1287 NC_009512.1 1455854 1456636 D PFAM: helix-turn-helix- domain containing protein, AraC type; PAS fold-4 domain protein; AraC family transcriptional regulator 1455854..1456636 Pseudomonas putida F1 5194474 YP_001266633.1 CDS Pput_1288 NC_009512.1 1456624 1457511 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1456624..1457511) Pseudomonas putida F1 5195534 YP_001266634.1 CDS Pput_1289 NC_009512.1 1457653 1458192 D TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 1457653..1458192 Pseudomonas putida F1 5195535 YP_001266635.1 CDS Pput_1290 NC_009512.1 1458277 1459176 R PFAM: protein of unknown function UPF0187; hypothetical protein complement(1458277..1459176) Pseudomonas putida F1 5194322 YP_001266636.1 CDS moaA NC_009512.1 1459197 1460201 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1459197..1460201) Pseudomonas putida F1 5194323 YP_001266637.1 CDS Pput_1292 NC_009512.1 1460424 1462754 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 1460424..1462754 Pseudomonas putida F1 5193795 YP_001266638.1 CDS Pput_1293 NC_009512.1 1462864 1463358 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(1462864..1463358) Pseudomonas putida F1 5193796 YP_001266639.1 CDS Pput_1294 NC_009512.1 1463418 1464599 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; cystathionine gamma-lyase 1463418..1464599 Pseudomonas putida F1 5192497 YP_001266640.1 CDS Pput_1295 NC_009512.1 1464812 1465048 R hypothetical protein complement(1464812..1465048) Pseudomonas putida F1 5192498 YP_001266641.1 CDS Pput_1296 NC_009512.1 1465301 1466938 D PFAM: sulfatase; protein of unknown function DUF1705; hypothetical protein 1465301..1466938 Pseudomonas putida F1 5194113 YP_001266642.1 CDS Pput_1297 NC_009512.1 1467116 1468249 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; ribonuclease D 1467116..1468249 Pseudomonas putida F1 5194114 YP_001266643.1 CDS Pput_1298 NC_009512.1 1468246 1468539 D PFAM: protein of unknown function DUF709; hypothetical protein 1468246..1468539 Pseudomonas putida F1 5195206 YP_001266644.1 CDS Pput_1299 NC_009512.1 1468542 1469474 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1468542..1469474 Pseudomonas putida F1 5195207 YP_001266645.1 CDS Pput_1300 NC_009512.1 1469587 1470180 R PFAM: nitroreductase; nitroreductase complement(1469587..1470180) Pseudomonas putida F1 5192697 YP_001266646.1 CDS Pput_1301 NC_009512.1 1470326 1470775 D PFAM: protein of unknown function UPF0153; hypothetical protein 1470326..1470775 Pseudomonas putida F1 5192178 YP_001266647.1 CDS Pput_1302 NC_009512.1 1470817 1472025 D hypothetical protein 1470817..1472025 Pseudomonas putida F1 5192179 YP_001266648.1 CDS Pput_1304 NC_009512.1 1472311 1472781 R PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1472311..1472781) Pseudomonas putida F1 5194644 YP_001266649.1 CDS Pput_1305 NC_009512.1 1472853 1473224 R PFAM: HNH endonuclease; SMART: HNH nuclease; hypothetical protein complement(1472853..1473224) Pseudomonas putida F1 5194587 YP_001266650.1 CDS Pput_1306 NC_009512.1 1473832 1475874 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B complement(1473832..1475874) Pseudomonas putida F1 5194568 YP_001266651.1 CDS Pput_1307 NC_009512.1 1476054 1476551 D hypothetical protein 1476054..1476551 Pseudomonas putida F1 5194569 YP_001266652.1 CDS Pput_1308 NC_009512.1 1476566 1477339 D PFAM: glutamine amidotransferase, class-II; class II glutamine amidotransferase 1476566..1477339 Pseudomonas putida F1 5192233 YP_001266653.1 CDS Pput_1309 NC_009512.1 1477349 1477870 D hypothetical protein 1477349..1477870 Pseudomonas putida F1 5192234 YP_001266654.1 CDS Pput_1310 NC_009512.1 1478006 1478917 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1478006..1478917) Pseudomonas putida F1 5193230 YP_001266655.1 CDS Pput_1311 NC_009512.1 1479048 1480334 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1479048..1480334 Pseudomonas putida F1 5193231 YP_001266656.1 CDS Pput_1312 NC_009512.1 1480344 1481120 D PFAM: LamB/YcsF family protein; LamB/YcsF family protein 1480344..1481120 Pseudomonas putida F1 5194850 YP_001266657.1 CDS Pput_1313 NC_009512.1 1481120 1481806 D PFAM: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 1481120..1481806 Pseudomonas putida F1 5194851 YP_001266658.1 CDS Pput_1314 NC_009512.1 1481803 1482720 D TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 1481803..1482720 Pseudomonas putida F1 5193298 YP_001266659.1 CDS Pput_1315 NC_009512.1 1482838 1484016 R hypothetical protein complement(1482838..1484016) Pseudomonas putida F1 5193299 YP_001266660.1 CDS Pput_1316 NC_009512.1 1484030 1484875 R PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase complement(1484030..1484875) Pseudomonas putida F1 5191545 YP_001266661.1 CDS Pput_1317 NC_009512.1 1485063 1486136 R hypothetical protein complement(1485063..1486136) Pseudomonas putida F1 5191546 YP_001266662.1 CDS Pput_1318 NC_009512.1 1486269 1487243 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 1486269..1487243 Pseudomonas putida F1 5191753 YP_001266663.1 CDS Pput_1319 NC_009512.1 1487417 1488352 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 1487417..1488352 Pseudomonas putida F1 5191754 YP_001266664.1 CDS Pput_1320 NC_009512.1 1488378 1488671 D hypothetical protein 1488378..1488671 Pseudomonas putida F1 5191612 YP_001266665.1 CDS Pput_1321 NC_009512.1 1488788 1489669 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1488788..1489669 Pseudomonas putida F1 5191613 YP_001266666.1 CDS Pput_1322 NC_009512.1 1489673 1490131 R hypothetical protein complement(1489673..1490131) Pseudomonas putida F1 5192923 YP_001266667.1 CDS Pput_1323 NC_009512.1 1490145 1491020 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(1490145..1491020) Pseudomonas putida F1 5192924 YP_001266668.1 CDS aceK NC_009512.1 1491225 1492940 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 1491225..1492940 Pseudomonas putida F1 5192661 YP_001266669.1 CDS Pput_1325 NC_009512.1 1492960 1493820 R hypothetical protein complement(1492960..1493820) Pseudomonas putida F1 5192662 YP_001266670.1 CDS Pput_1326 NC_009512.1 1493951 1494787 D SMART: RNA binding S1 domain protein; RNA-binding S1 domain-containing protein 1493951..1494787 Pseudomonas putida F1 5194342 YP_001266671.1 CDS Pput_1327 NC_009512.1 1494793 1495173 R hypothetical protein complement(1494793..1495173) Pseudomonas putida F1 5192641 YP_001266672.1 CDS Pput_1328 NC_009512.1 1495409 1495588 D PFAM: CsbD family protein; CsbD family protein 1495409..1495588 Pseudomonas putida F1 5192642 YP_001266673.1 CDS Pput_1329 NC_009512.1 1495749 1496705 D TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; putative ribonuclease BN 1495749..1496705 Pseudomonas putida F1 5194596 YP_001266674.1 CDS Pput_1330 NC_009512.1 1496705 1497241 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1496705..1497241 Pseudomonas putida F1 5194597 YP_001266675.1 CDS Pput_1331 NC_009512.1 1497196 1497636 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1497196..1497636) Pseudomonas putida F1 5194332 YP_001266676.1 CDS Pput_1332 NC_009512.1 1497919 1498176 D hypothetical protein 1497919..1498176 Pseudomonas putida F1 5194333 YP_001266677.1 CDS Pput_1333 NC_009512.1 1498366 1498791 D hypothetical protein 1498366..1498791 Pseudomonas putida F1 5194898 YP_001266678.1 CDS Pput_1334 NC_009512.1 1498836 1499180 D PFAM: DGPFAETKE family protein; DGPFAETKE family protein 1498836..1499180 Pseudomonas putida F1 5194899 YP_001266679.1 CDS Pput_1335 NC_009512.1 1499202 1499687 D PFAM: Activator of Hsp90 ATPase 1 family protein; activator of Hsp90 ATPase 1 family protein 1499202..1499687 Pseudomonas putida F1 5191201 YP_001266680.1 CDS Pput_1336 NC_009512.1 1499687 1500925 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; RNA polymerase ECF-subfamily sigma factor 1499687..1500925 Pseudomonas putida F1 5191202 YP_001266681.1 CDS Pput_1337 NC_009512.1 1501044 1501514 R PFAM: MaoC domain protein dehydratase; dehydratase complement(1501044..1501514) Pseudomonas putida F1 5191922 YP_001266682.1 CDS Pput_1338 NC_009512.1 1501549 1502493 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(1501549..1502493) Pseudomonas putida F1 5191923 YP_001266683.1 CDS Pput_1339 NC_009512.1 1502712 1504400 D Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 1502712..1504400 Pseudomonas putida F1 5193697 YP_001266684.1 CDS Pput_1340 NC_009512.1 1504720 1506417 D activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 1504720..1506417 Pseudomonas putida F1 5193698 YP_001266685.1 CDS Pput_1341 NC_009512.1 1506704 1508011 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1506704..1508011) Pseudomonas putida F1 5193645 YP_001266686.1 CDS Pput_1342 NC_009512.1 1508036 1509415 R PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase complement(1508036..1509415) Pseudomonas putida F1 5193646 YP_001266687.1 CDS Pput_1343 NC_009512.1 1509486 1509701 R hypothetical protein complement(1509486..1509701) Pseudomonas putida F1 5190696 YP_001266688.1 CDS Pput_1344 NC_009512.1 1509971 1513876 D TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 1509971..1513876 Pseudomonas putida F1 5190697 YP_001266689.1 CDS Pput_1345 NC_009512.1 1514000 1515172 D catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1514000..1515172 Pseudomonas putida F1 5191033 YP_001266690.1 CDS Pput_1346 NC_009512.1 1515374 1516618 R hypothetical protein complement(1515374..1516618) Pseudomonas putida F1 5191034 YP_001266691.1 CDS Pput_1347 NC_009512.1 1516824 1518008 D PFAM: protein of unknown function DUF482; hypothetical protein 1516824..1518008 Pseudomonas putida F1 5195416 YP_001266692.1 CDS Pput_1348 NC_009512.1 1518113 1519945 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1518113..1519945) Pseudomonas putida F1 5195417 YP_001266693.1 CDS Pput_1349 NC_009512.1 1520008 1520565 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1520008..1520565) Pseudomonas putida F1 5190856 YP_001266694.1 CDS Pput_1350 NC_009512.1 1520559 1521371 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(1520559..1521371) Pseudomonas putida F1 5190857 YP_001266695.1 CDS Pput_1351 NC_009512.1 1521385 1522308 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1521385..1522308) Pseudomonas putida F1 5194692 YP_001266696.1 CDS Pput_1352 NC_009512.1 1522357 1522671 D hypothetical protein 1522357..1522671 Pseudomonas putida F1 5194693 YP_001266697.1 CDS Pput_1353 NC_009512.1 1522768 1523382 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1522768..1523382 Pseudomonas putida F1 5193665 YP_001266698.1 CDS Pput_1354 NC_009512.1 1523638 1524513 D TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6, transmembrane; carboxylate/amino acid/amine transporter 1523638..1524513 Pseudomonas putida F1 5193666 YP_001266699.1 CDS Pput_1356 NC_009512.1 1525853 1526836 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 1525853..1526836 Pseudomonas putida F1 5194645 YP_001266700.1 CDS Pput_1358 NC_009512.1 1527555 1527914 D PFAM: Cupin 2, conserved barrel domain protein; cupin 1527555..1527914 Pseudomonas putida F1 5190700 YP_001266701.1 CDS Pput_1359 NC_009512.1 1528057 1528947 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(1528057..1528947) Pseudomonas putida F1 5192875 YP_001266702.1 CDS Pput_1360 NC_009512.1 1528950 1530041 R PFAM: protein of unknown function DUF453; hypothetical protein complement(1528950..1530041) Pseudomonas putida F1 5192876 YP_001266703.1 CDS Pput_1361 NC_009512.1 1530043 1530759 R TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein complement(1530043..1530759) Pseudomonas putida F1 5191630 YP_001266704.1 CDS Pput_1362 NC_009512.1 1530756 1531493 R PFAM: LmbE family protein; LmbE family protein complement(1530756..1531493) Pseudomonas putida F1 5191631 YP_001266705.1 CDS Pput_1363 NC_009512.1 1531521 1532747 R PFAM: outer membrane porin; outer membrane porin complement(1531521..1532747) Pseudomonas putida F1 5191256 YP_001266706.1 CDS Pput_1364 NC_009512.1 1532817 1534133 R PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1532817..1534133) Pseudomonas putida F1 5191257 YP_001266707.1 CDS Pput_1365 NC_009512.1 1534187 1535050 R PFAM: amidohydrolase 2; amidohydrolase 2 complement(1534187..1535050) Pseudomonas putida F1 5193677 YP_001266708.1 CDS Pput_1366 NC_009512.1 1535163 1536041 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1535163..1536041) Pseudomonas putida F1 5193678 YP_001266709.1 CDS Pput_1367 NC_009512.1 1536247 1536885 R PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein complement(1536247..1536885) Pseudomonas putida F1 5191080 YP_001266710.1 CDS Pput_1368 NC_009512.1 1536913 1537887 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(1536913..1537887) Pseudomonas putida F1 5191081 YP_001266711.1 CDS Pput_1369 NC_009512.1 1537898 1539238 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1537898..1539238) Pseudomonas putida F1 5190409 YP_001266712.1 CDS Pput_1370 NC_009512.1 1539408 1540946 D PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; transcriptional regulator IclR-like protein 1539408..1540946 Pseudomonas putida F1 5190410 YP_001266713.1 CDS Pput_1371 NC_009512.1 1541460 1542251 D hypothetical protein 1541460..1542251 Pseudomonas putida F1 5193385 YP_001266714.1 CDS Pput_1372 NC_009512.1 1542712 1543002 D hypothetical protein 1542712..1543002 Pseudomonas putida F1 5193386 YP_001266715.1 CDS Pput_1373 NC_009512.1 1543461 1543673 D PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1543461..1543673 Pseudomonas putida F1 5194118 YP_001266716.1 CDS Pput_1374 NC_009512.1 1543706 1544902 R PFAM: transposase, mutator type; transposase, mutator type complement(1543706..1544902) Pseudomonas putida F1 5194119 YP_001266717.1 CDS Pput_1375 NC_009512.1 1545548 1545790 D hypothetical protein 1545548..1545790 Pseudomonas putida F1 5190627 YP_001266718.1 CDS Pput_1376 NC_009512.1 1545887 1546156 D hypothetical protein 1545887..1546156 Pseudomonas putida F1 5190628 YP_001266719.1 CDS Pput_1377 NC_009512.1 1546509 1547810 R PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(1546509..1547810) Pseudomonas putida F1 5194492 YP_001266720.1 CDS Pput_1378 NC_009512.1 1547914 1549275 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1547914..1549275 Pseudomonas putida F1 5194493 YP_001266721.1 CDS Pput_1379 NC_009512.1 1549347 1549619 R hypothetical protein complement(1549347..1549619) Pseudomonas putida F1 5191482 YP_001266722.1 CDS Pput_1380 NC_009512.1 1549835 1550113 D PFAM: protein of unknown function DUF497; hypothetical protein 1549835..1550113 Pseudomonas putida F1 5191483 YP_001266723.1 CDS Pput_1381 NC_009512.1 1550091 1550345 D hypothetical protein 1550091..1550345 Pseudomonas putida F1 5192966 YP_001266724.1 CDS Pput_1382 NC_009512.1 1550422 1550817 D hypothetical protein 1550422..1550817 Pseudomonas putida F1 5192967 YP_001266725.1 CDS Pput_1383 NC_009512.1 1550923 1551849 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1550923..1551849 Pseudomonas putida F1 5192856 YP_001266726.1 CDS Pput_1384 NC_009512.1 1551949 1553121 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; hypothetical protein complement(1551949..1553121) Pseudomonas putida F1 5192857 YP_001266727.1 CDS Pput_1385 NC_009512.1 1553228 1554121 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1553228..1554121 Pseudomonas putida F1 5191693 YP_001266728.1 CDS Pput_1386 NC_009512.1 1554246 1554374 D hypothetical protein 1554246..1554374 Pseudomonas putida F1 5191694 YP_001266729.1 CDS Pput_1387 NC_009512.1 1554501 1555880 R PFAM: Na+/solute symporter; Na+/solute symporter complement(1554501..1555880) Pseudomonas putida F1 5193966 YP_001266730.1 CDS Pput_1388 NC_009512.1 1556013 1556975 R TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; putative agmatinase complement(1556013..1556975) Pseudomonas putida F1 5193967 YP_001266731.1 CDS Pput_1389 NC_009512.1 1557188 1558081 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1557188..1558081 Pseudomonas putida F1 5190464 YP_001266732.1 CDS Pput_1390 NC_009512.1 1558180 1559784 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; methyl-accepting chemotaxis sensory transducer 1558180..1559784 Pseudomonas putida F1 5190465 YP_001266733.1 CDS Pput_1391 NC_009512.1 1559849 1560448 D PFAM: DTW domain containing protein; DTW domain-containing protein 1559849..1560448 Pseudomonas putida F1 5195149 YP_001266734.1 CDS Pput_1392 NC_009512.1 1560511 1561869 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein complement(1560511..1561869) Pseudomonas putida F1 5195150 YP_001266735.1 CDS Pput_1393 NC_009512.1 1562181 1562546 R PFAM: protein of unknown function DUF454; hypothetical protein complement(1562181..1562546) Pseudomonas putida F1 5191254 YP_001266736.1 CDS Pput_1394 NC_009512.1 1562554 1563141 R TIGRFAM: yecA family protein; yecA family protein complement(1562554..1563141) Pseudomonas putida F1 5191255 YP_001266737.1 CDS Pput_1395 NC_009512.1 1563385 1565532 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 1563385..1565532 Pseudomonas putida F1 5194188 YP_001266738.1 CDS Pput_1396 NC_009512.1 1565684 1566121 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1565684..1566121 Pseudomonas putida F1 5194189 YP_001266739.1 CDS Pput_1397 NC_009512.1 1566155 1568341 R PFAM: Patatin; surface antigen variable number repeat protein; patatin complement(1566155..1568341) Pseudomonas putida F1 5193902 YP_001266740.1 CDS Pput_1398 NC_009512.1 1568409 1568690 D TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; hypothetical protein 1568409..1568690 Pseudomonas putida F1 5193903 YP_001266741.1 CDS Pput_1399 NC_009512.1 1568691 1569581 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(1568691..1569581) Pseudomonas putida F1 5193582 YP_001266742.1 CDS Pput_1400 NC_009512.1 1569802 1570569 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(1569802..1570569) Pseudomonas putida F1 5193583 YP_001266743.1 CDS Pput_1401 NC_009512.1 1570697 1571494 D PFAM: metallophosphoesterase; metallophosphoesterase 1570697..1571494 Pseudomonas putida F1 5194245 YP_001266744.1 CDS Pput_1402 NC_009512.1 1571533 1571844 R hypothetical protein complement(1571533..1571844) Pseudomonas putida F1 5194246 YP_001266745.1 CDS Pput_1403 NC_009512.1 1571998 1573059 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1571998..1573059 Pseudomonas putida F1 5195196 YP_001266746.1 CDS Pput_1404 NC_009512.1 1573016 1574470 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein complement(1573016..1574470) Pseudomonas putida F1 5195197 YP_001266747.1 CDS Pput_1405 NC_009512.1 1574573 1575130 D PFAM: nitroreductase; nitroreductase 1574573..1575130 Pseudomonas putida F1 5194135 YP_001266748.1 CDS Pput_1406 NC_009512.1 1575261 1576601 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(1575261..1576601) Pseudomonas putida F1 5194136 YP_001266749.1 CDS Pput_1407 NC_009512.1 1576660 1577076 R PFAM: protein of unknown function, Spy-related; hypothetical protein complement(1576660..1577076) Pseudomonas putida F1 5195422 YP_001266750.1 CDS Pput_1408 NC_009512.1 1577237 1577914 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(1577237..1577914) Pseudomonas putida F1 5195423 YP_001266751.1 CDS Pput_1409 NC_009512.1 1577927 1578202 R hypothetical protein complement(1577927..1578202) Pseudomonas putida F1 5195573 YP_001266752.1 CDS Pput_1410 NC_009512.1 1578247 1578546 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1578247..1578546) Pseudomonas putida F1 5195574 YP_001266753.1 CDS Pput_1411 NC_009512.1 1578548 1579141 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1578548..1579141) Pseudomonas putida F1 5194420 YP_001266754.1 CDS Pput_1412 NC_009512.1 1579209 1580069 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; phosphotransferase domain-containing protein 1579209..1580069 Pseudomonas putida F1 5194421 YP_001266755.1 CDS Pput_1413 NC_009512.1 1580047 1580712 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; Sua5/YciO/YrdC/YwlC family protein 1580047..1580712 Pseudomonas putida F1 5195330 YP_001266756.1 CDS Pput_1414 NC_009512.1 1580709 1581563 D PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1580709..1581563 Pseudomonas putida F1 5195331 YP_001266757.1 CDS Pput_1415 NC_009512.1 1581550 1582317 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; putative transcriptional regulator 1581550..1582317 Pseudomonas putida F1 5190197 YP_001266758.1 CDS Pput_1416 NC_009512.1 1582583 1583650 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RNA-binding S4 domain-containing protein 1582583..1583650 Pseudomonas putida F1 5190198 YP_001266759.1 CDS Pput_1417 NC_009512.1 1584288 1585706 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 1584288..1585706 Pseudomonas putida F1 5193053 YP_001266760.1 CDS Pput_1418 NC_009512.1 1585845 1586729 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1585845..1586729) Pseudomonas putida F1 5193054 YP_001266761.1 CDS Pput_1419 NC_009512.1 1586882 1589902 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1586882..1589902 Pseudomonas putida F1 5192439 YP_001266762.1 CDS Pput_1420 NC_009512.1 1590035 1591237 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1590035..1591237) Pseudomonas putida F1 5192440 YP_001266763.1 CDS Pput_1421 NC_009512.1 1591328 1595527 R hypothetical protein complement(1591328..1595527) Pseudomonas putida F1 5190441 YP_001266764.1 CDS Pput_1422 NC_009512.1 1595685 1595894 R hypothetical protein complement(1595685..1595894) Pseudomonas putida F1 5190442 YP_001266765.1 CDS phhB NC_009512.1 1596003 1596359 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(1596003..1596359) Pseudomonas putida F1 5193480 YP_001266766.1 CDS phhA NC_009512.1 1596399 1597187 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(1596399..1597187) Pseudomonas putida F1 5193481 YP_001266767.1 CDS Pput_1425 NC_009512.1 1597445 1599004 D PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; transcriptional regulator TyrR 1597445..1599004 Pseudomonas putida F1 5194377 YP_001266768.1 CDS Pput_1426 NC_009512.1 1599255 1600205 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 complement(1599255..1600205) Pseudomonas putida F1 5194378 YP_001266769.1 CDS Pput_1427 NC_009512.1 1600468 1600722 R hypothetical protein complement(1600468..1600722) Pseudomonas putida F1 5192310 YP_001266770.2 CDS acsA NC_009512.1 1601120 1603081 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1601120..1603081 Pseudomonas putida F1 5192311 YP_001266771.1 CDS Pput_1429 NC_009512.1 1603618 1604403 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; cationic amino acid ABC transporter periplasmic binding protein 1603618..1604403 Pseudomonas putida F1 5192546 YP_001266772.1 CDS Pput_1430 NC_009512.1 1604492 1605181 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1604492..1605181 Pseudomonas putida F1 5192547 YP_001266773.1 CDS Pput_1431 NC_009512.1 1605178 1605876 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1605178..1605876 Pseudomonas putida F1 5193020 YP_001266774.1 CDS Pput_1432 NC_009512.1 1605899 1606663 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1605899..1606663 Pseudomonas putida F1 5193021 YP_001266775.1 CDS Pput_1433 NC_009512.1 1606762 1607742 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 1606762..1607742 Pseudomonas putida F1 5192082 YP_001266776.1 CDS argD NC_009512.1 1608115 1609335 D DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 1608115..1609335 Pseudomonas putida F1 5192083 YP_001266777.1 CDS Pput_1435 NC_009512.1 1609483 1610502 D PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 1609483..1610502 Pseudomonas putida F1 5191210 YP_001266778.1 CDS Pput_1436 NC_009512.1 1610581 1611609 D PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 1610581..1611609 Pseudomonas putida F1 5191211 YP_001266779.1 CDS astD NC_009512.1 1611610 1613073 D a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1611610..1613073 Pseudomonas putida F1 5194775 YP_001266780.1 CDS Pput_1438 NC_009512.1 1613097 1614446 D catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1613097..1614446 Pseudomonas putida F1 5194776 YP_001266781.1 CDS Pput_1439 NC_009512.1 1614461 1614751 D hypothetical protein 1614461..1614751 Pseudomonas putida F1 5194247 YP_001266782.1 CDS Pput_1440 NC_009512.1 1614762 1615769 D catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1614762..1615769 Pseudomonas putida F1 5194248 YP_001266783.1 CDS alaS NC_009512.1 1616085 1618778 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1616085..1618778 Pseudomonas putida F1 5194817 YP_001266784.1 CDS Pput_1442 NC_009512.1 1618881 1620116 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1618881..1620116 Pseudomonas putida F1 5194818 YP_001266785.1 CDS Pput_1443 NC_009512.1 1620283 1620471 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 1620283..1620471 Pseudomonas putida F1 5195301 YP_001266786.1 CDS Pput_1444 NC_009512.1 1621664 1623106 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; magnesium transporter 1621664..1623106 Pseudomonas putida F1 5191665 YP_001266787.1 CDS Pput_1445 NC_009512.1 1623213 1623530 R PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein complement(1623213..1623530) Pseudomonas putida F1 5191502 YP_001266788.1 CDS Pput_1446 NC_009512.1 1623884 1624477 D TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 1623884..1624477 Pseudomonas putida F1 5191503 YP_001266789.1 CDS Pput_1447 NC_009512.1 1624748 1626130 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(1624748..1626130) Pseudomonas putida F1 5191892 YP_001266790.1 CDS Pput_1448 NC_009512.1 1626435 1626962 R hypothetical protein complement(1626435..1626962) Pseudomonas putida F1 5190753 YP_001266791.1 CDS Pput_1449 NC_009512.1 1627178 1628176 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1627178..1628176 Pseudomonas putida F1 5191839 YP_001266792.1 CDS Pput_1450 NC_009512.1 1628387 1629766 R E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1628387..1629766) Pseudomonas putida F1 5191840 YP_001266793.1 CDS Pput_1451 NC_009512.1 1629769 1631040 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(1629769..1631040) Pseudomonas putida F1 5192524 YP_001266794.1 CDS Pput_1452 NC_009512.1 1631041 1632099 R PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region complement(1631041..1632099) Pseudomonas putida F1 5192525 YP_001266795.1 CDS Pput_1453 NC_009512.1 1632101 1633333 R PFAM: dehydrogenase, E1 component; 3-methyl-2-oxobutanoate dehydrogenase complement(1632101..1633333) Pseudomonas putida F1 5191622 YP_001266796.1 CDS Pput_1454 NC_009512.1 1633532 1634017 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 1633532..1634017 Pseudomonas putida F1 5191623 YP_001266797.1 CDS Pput_1455 NC_009512.1 1634192 1635514 D PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 1634192..1635514 Pseudomonas putida F1 5195449 YP_001266798.1 CDS Pput_1456 NC_009512.1 1635647 1636987 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1635647..1636987 Pseudomonas putida F1 5195450 YP_001266799.1 CDS Pput_1457 NC_009512.1 1637081 1637824 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1637081..1637824) Pseudomonas putida F1 5195198 YP_001266800.1 CDS Pput_1458 NC_009512.1 1637904 1638371 R PFAM: FlgN family protein; FlgN family protein complement(1637904..1638371) Pseudomonas putida F1 5195199 YP_001266801.1 CDS Pput_1459 NC_009512.1 1638421 1638735 R PFAM: Anti-sigma-28 factor, FlgM family protein; anti-sigma-28 factor FlgM complement(1638421..1638735) Pseudomonas putida F1 5194518 YP_001266802.1 CDS flgA NC_009512.1 1638900 1639652 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1638900..1639652) Pseudomonas putida F1 5194519 YP_001266803.1 CDS Pput_1461 NC_009512.1 1639730 1640659 D PFAM: response regulator receiver; CheW domain protein; putative CheW protein 1639730..1640659 Pseudomonas putida F1 5192635 YP_001266804.1 CDS Pput_1462 NC_009512.1 1640712 1641539 D PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 1640712..1641539 Pseudomonas putida F1 5192636 YP_001266805.1 CDS flgB NC_009512.1 1642012 1642422 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1642012..1642422 Pseudomonas putida F1 5192598 YP_001266806.1 CDS flgC NC_009512.1 1642425 1642868 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1642425..1642868 Pseudomonas putida F1 5194088 YP_001266807.1 CDS flgD NC_009512.1 1642884 1643588 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1642884..1643588 Pseudomonas putida F1 5192511 YP_001266808.1 CDS Pput_1467 NC_009512.1 1643620 1645374 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body FlaE domain-containing protein 1643620..1645374 Pseudomonas putida F1 5192512 YP_001266809.1 CDS Pput_1468 NC_009512.1 1645447 1645635 D hypothetical protein 1645447..1645635 Pseudomonas putida F1 5191031 YP_001266810.1 CDS flgF NC_009512.1 1645841 1646581 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1645841..1646581 Pseudomonas putida F1 5191032 YP_001266811.1 CDS flgG NC_009512.1 1646630 1647415 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1646630..1647415 Pseudomonas putida F1 5194974 YP_001266812.1 CDS flgH NC_009512.1 1647452 1648147 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1647452..1648147 Pseudomonas putida F1 5194975 YP_001266813.1 CDS flgI NC_009512.1 1648160 1649269 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1648160..1649269 Pseudomonas putida F1 5191716 YP_001266814.1 CDS flgJ NC_009512.1 1649281 1650435 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1649281..1650435 Pseudomonas putida F1 5191717 YP_001266815.1 CDS flgK NC_009512.1 1650448 1652478 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1650448..1652478 Pseudomonas putida F1 5191492 YP_001266816.1 CDS flgL NC_009512.1 1652492 1654057 D With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 1652492..1654057 Pseudomonas putida F1 5191493 YP_001266817.1 CDS Pput_1476 NC_009512.1 1654185 1657763 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1654185..1657763 Pseudomonas putida F1 5195505 YP_001266818.1 CDS Pput_1477 NC_009512.1 1657816 1660533 D hypothetical protein 1657816..1660533 Pseudomonas putida F1 5195506 YP_001266819.1 CDS Pput_1478 NC_009512.1 1660548 1660784 D hypothetical protein 1660548..1660784 Pseudomonas putida F1 5194177 YP_001266820.1 CDS Pput_1479 NC_009512.1 1660781 1661551 D TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 1660781..1661551 Pseudomonas putida F1 5194178 YP_001266821.1 CDS Pput_1480 NC_009512.1 1661548 1662609 D TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; CDP-glucose 4,6-dehydratase 1661548..1662609 Pseudomonas putida F1 5191970 YP_001266822.1 CDS Pput_1481 NC_009512.1 1662602 1663924 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase 1662602..1663924 Pseudomonas putida F1 5191971 YP_001266823.1 CDS Pput_1482 NC_009512.1 1664016 1667504 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1664016..1667504 Pseudomonas putida F1 5192196 YP_001266824.1 CDS Pput_1483 NC_009512.1 1667659 1668768 D PFAM: N-acetylneuraminic acid synthase, N-terminal domain; N-acetylneuraminic acid synthase domain-containing protein 1667659..1668768 Pseudomonas putida F1 5192197 YP_001266825.1 CDS Pput_1484 NC_009512.1 1668768 1670600 D PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate binding domain-containing protein 1668768..1670600 Pseudomonas putida F1 5194348 YP_001266826.1 CDS Pput_1485 NC_009512.1 1670600 1671730 D TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1670600..1671730 Pseudomonas putida F1 5194349 YP_001266827.1 CDS Pput_1486 NC_009512.1 1671730 1672683 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1671730..1672683 Pseudomonas putida F1 5191735 YP_001266828.1 CDS Pput_1487 NC_009512.1 1672754 1673656 D hypothetical protein 1672754..1673656 Pseudomonas putida F1 5191736 YP_001266829.1 CDS Pput_1488 NC_009512.1 1673871 1674806 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; beta-ketoacyl-acyl-carrier-protein synthase I 1673871..1674806 Pseudomonas putida F1 5192964 YP_001266830.1 CDS Pput_1489 NC_009512.1 1675059 1675910 D structural flagella protein; flagellin 1675059..1675910 Pseudomonas putida F1 5192965 YP_001266831.1 CDS Pput_1490 NC_009512.1 1675982 1676359 D PFAM: flagellar protein FlaG protein; flagellar protein FlaG protein 1675982..1676359 Pseudomonas putida F1 5191248 YP_001266832.1 CDS Pput_1491 NC_009512.1 1676441 1677853 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated 2 domain-containing protein 1676441..1677853 Pseudomonas putida F1 5191249 YP_001266833.1 CDS fliS NC_009512.1 1677992 1678387 D flagellin specific chaperone; flagellar protein FliS 1677992..1678387 Pseudomonas putida F1 5190288 YP_001266834.1 CDS Pput_1493 NC_009512.1 1678402 1678698 D hypothetical protein 1678402..1678698 Pseudomonas putida F1 5190289 YP_001266835.1 CDS Pput_1494 NC_009512.1 1678868 1680343 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 1678868..1680343 Pseudomonas putida F1 5193461 YP_001266836.1 CDS Pput_1495 NC_009512.1 1680484 1681701 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1680484..1681701 Pseudomonas putida F1 5193462 YP_001266837.1 CDS Pput_1496 NC_009512.1 1681701 1683056 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 1681701..1683056 Pseudomonas putida F1 5191714 YP_001266838.1 CDS fliE NC_009512.1 1683251 1683583 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1683251..1683583 Pseudomonas putida F1 5191715 YP_001266839.1 CDS fliF NC_009512.1 1683599 1685377 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1683599..1685377 Pseudomonas putida F1 5190445 YP_001266840.1 CDS fliG NC_009512.1 1685370 1686389 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1685370..1686389 Pseudomonas putida F1 5190446 YP_001266841.1 CDS fliH NC_009512.1 1686552 1687346 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1686552..1687346 Pseudomonas putida F1 5190367 YP_001266842.1 CDS fliI NC_009512.1 1687336 1688691 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1687336..1688691 Pseudomonas putida F1 5190368 YP_001266843.1 CDS fliJ NC_009512.1 1688698 1689150 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 1688698..1689150 Pseudomonas putida F1 5195151 YP_001266844.1 CDS Pput_1503 NC_009512.1 1689458 1689763 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 1689458..1689763 Pseudomonas putida F1 5195152 YP_001266845.1 CDS Pput_1504 NC_009512.1 1689772 1691463 D PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein 1689772..1691463 Pseudomonas putida F1 5192623 YP_001266846.1 CDS Pput_1505 NC_009512.1 1691521 1691859 D PFAM: Hpt domain protein; Hpt protein 1691521..1691859 Pseudomonas putida F1 5192624 YP_001266847.1 CDS Pput_1506 NC_009512.1 1691930 1693195 D PFAM: flagellar hook-length control protein; flagellar hook-length control protein 1691930..1693195 Pseudomonas putida F1 5193827 YP_001266848.1 CDS fliL NC_009512.1 1693415 1693912 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1693415..1693912 Pseudomonas putida F1 5193828 YP_001266849.1 CDS fliM NC_009512.1 1693922 1694890 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1693922..1694890 Pseudomonas putida F1 5192782 YP_001266850.1 CDS fliN NC_009512.1 1694938 1695402 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1694938..1695402 Pseudomonas putida F1 5192783 YP_001266851.1 CDS Pput_1510 NC_009512.1 1695415 1695849 D PFAM: flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1695415..1695849 Pseudomonas putida F1 5193348 YP_001266852.1 CDS fliP NC_009512.1 1695849 1696604 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1695849..1696604 Pseudomonas putida F1 5193349 YP_001266853.1 CDS fliQ NC_009512.1 1696626 1696895 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1696626..1696895 Pseudomonas putida F1 5190782 YP_001266854.1 CDS fliR NC_009512.1 1696903 1697679 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1696903..1697679 Pseudomonas putida F1 5190783 YP_001266855.1 CDS flhB NC_009512.1 1697682 1698824 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1697682..1698824 Pseudomonas putida F1 5191663 YP_001266856.1 CDS Pput_1515 NC_009512.1 1699049 1699312 D flagellar biosynthesis pathway component FlhA-like protein 1699049..1699312 Pseudomonas putida F1 5191664 YP_001266857.1 CDS Pput_1516 NC_009512.1 1699466 1700380 R PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(1699466..1700380) Pseudomonas putida F1 5190517 YP_001266858.1 CDS Pput_1517 NC_009512.1 1700377 1701540 R PFAM: aminotransferase, class V; class V aminotransferase complement(1700377..1701540) Pseudomonas putida F1 5190518 YP_001266859.1 CDS Pput_1518 NC_009512.1 1701551 1702429 R hypothetical protein complement(1701551..1702429) Pseudomonas putida F1 5193916 YP_001266860.1 CDS Pput_1519 NC_009512.1 1702463 1703656 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; Cys/Met metabolism pyridoxal-phosphate-dependent enzyme complement(1702463..1703656) Pseudomonas putida F1 5193917 YP_001266861.1 CDS Pput_1520 NC_009512.1 1703631 1705259 R hypothetical protein complement(1703631..1705259) Pseudomonas putida F1 5195276 YP_001266862.1 CDS Pput_1521 NC_009512.1 1705353 1706411 D TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 1705353..1706411 Pseudomonas putida F1 5195277 YP_001266863.1 CDS Pput_1522 NC_009512.1 1706406 1707209 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(1706406..1707209) Pseudomonas putida F1 5194316 YP_001266864.1 CDS flhA NC_009512.1 1707400 1709646 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1707400..1709646 Pseudomonas putida F1 5194317 YP_001266865.1 CDS flhF NC_009512.1 1709658 1710965 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1709658..1710965 Pseudomonas putida F1 5191440 YP_001266866.1 CDS Pput_1525 NC_009512.1 1711059 1711892 D PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1711059..1711892 Pseudomonas putida F1 5191441 YP_001266867.1 CDS fliA NC_009512.1 1711889 1712629 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1711889..1712629 Pseudomonas putida F1 5192080 YP_001266868.1 CDS Pput_1527 NC_009512.1 1712725 1713111 D PFAM: response regulator receiver; response regulator receiver protein 1712725..1713111 Pseudomonas putida F1 5192081 YP_001266869.1 CDS Pput_1528 NC_009512.1 1713133 1713921 D PFAM: Chemotaxis phosphatase, CheZ; chemotaxis phosphatase CheZ 1713133..1713921 Pseudomonas putida F1 5191078 YP_001266870.1 CDS Pput_1529 NC_009512.1 1713934 1716177 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 1713934..1716177 Pseudomonas putida F1 5191079 YP_001266871.1 CDS Pput_1530 NC_009512.1 1716224 1717336 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1716224..1717336 Pseudomonas putida F1 5192590 YP_001266872.1 CDS motC NC_009512.1 1717336 1718076 D homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 1717336..1718076 Pseudomonas putida F1 5192591 YP_001266873.1 CDS Pput_1532 NC_009512.1 1718080 1718937 D Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 1718080..1718937 Pseudomonas putida F1 5195519 YP_001266874.1 CDS Pput_1533 NC_009512.1 1719161 1719949 D PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1719161..1719949 Pseudomonas putida F1 5195520 YP_001266875.1 CDS Pput_1534 NC_009512.1 1719949 1720845 D PFAM: CheW domain protein; putative CheW protein 1719949..1720845 Pseudomonas putida F1 5190217 YP_001266876.1 CDS Pput_1535 NC_009512.1 1720887 1721366 D PFAM: CheW domain protein; putative CheW protein 1720887..1721366 Pseudomonas putida F1 5190218 YP_001266877.1 CDS Pput_1536 NC_009512.1 1721368 1721763 D hypothetical protein 1721368..1721763 Pseudomonas putida F1 5193560 YP_001266878.1 CDS Pput_1537 NC_009512.1 1721871 1724582 R hypothetical protein complement(1721871..1724582) Pseudomonas putida F1 5193561 YP_001266879.1 CDS Pput_1538 NC_009512.1 1724650 1724988 R flagellar protein FhlB-like protein complement(1724650..1724988) Pseudomonas putida F1 5191314 YP_001266880.1 CDS Pput_1539 NC_009512.1 1724985 1726541 R hypothetical protein complement(1724985..1726541) Pseudomonas putida F1 5191315 YP_001266881.1 CDS Pput_1540 NC_009512.1 1726780 1727412 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1726780..1727412 Pseudomonas putida F1 5193858 YP_001266882.1 CDS Pput_1541 NC_009512.1 1727409 1728077 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 1727409..1728077 Pseudomonas putida F1 5193859 YP_001266883.1 CDS Pput_1542 NC_009512.1 1728124 1728891 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 1728124..1728891 Pseudomonas putida F1 5195161 YP_001266884.1 CDS Pput_1543 NC_009512.1 1728888 1729064 D PFAM: Heme exporter protein D (CcmD); Heme exporter protein CcmD 1728888..1729064 Pseudomonas putida F1 5195162 YP_001266885.1 CDS Pput_1544 NC_009512.1 1729061 1729516 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1729061..1729516 Pseudomonas putida F1 5192094 YP_001266886.1 CDS Pput_1545 NC_009512.1 1729513 1731501 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 1729513..1731501 Pseudomonas putida F1 5192095 YP_001266887.1 CDS Pput_1546 NC_009512.1 1731498 1732034 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; periplasmic protein thiol--disulfide oxidoreductase DsbE 1731498..1732034 Pseudomonas putida F1 5194951 YP_001266888.1 CDS Pput_1547 NC_009512.1 1732031 1732507 D PFAM: cytochrome C biogenesis protein; cytochrome C biogenesis protein 1732031..1732507 Pseudomonas putida F1 5194952 YP_001266889.1 CDS Pput_1548 NC_009512.1 1732500 1733696 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1732500..1733696 Pseudomonas putida F1 5191393 YP_001266890.1 CDS Pput_1549 NC_009512.1 1733709 1734125 D hypothetical protein 1733709..1734125 Pseudomonas putida F1 5191394 YP_001266891.1 CDS Pput_1550 NC_009512.1 1734742 1734927 D hypothetical protein 1734742..1734927 Pseudomonas putida F1 5192465 YP_001266892.1 CDS Pput_1551 NC_009512.1 1734956 1735894 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 1734956..1735894 Pseudomonas putida F1 5192466 YP_001266893.1 CDS Pput_1552 NC_009512.1 1735946 1736734 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 1735946..1736734 Pseudomonas putida F1 5190720 YP_001266894.1 CDS Pput_1553 NC_009512.1 1736802 1737209 D PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1736802..1737209 Pseudomonas putida F1 5190721 YP_001266895.1 CDS Pput_1554 NC_009512.1 1737244 1737675 D PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1737244..1737675 Pseudomonas putida F1 5190530 YP_001266896.1 CDS Pput_1555 NC_009512.1 1737910 1738572 D hypothetical protein 1737910..1738572 Pseudomonas putida F1 5190531 YP_001266897.1 CDS Pput_1556 NC_009512.1 1738617 1739810 D PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase 1738617..1739810 Pseudomonas putida F1 5190947 YP_001266898.1 CDS Pput_1557 NC_009512.1 1739929 1740657 R PFAM: Asp/Glu racemase; Asp/Glu racemase complement(1739929..1740657) Pseudomonas putida F1 5190948 YP_001266899.1 CDS Pput_1558 NC_009512.1 1740674 1742206 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(1740674..1742206) Pseudomonas putida F1 5190764 YP_001266900.1 CDS Pput_1559 NC_009512.1 1742703 1743140 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(1742703..1743140) Pseudomonas putida F1 5190765 YP_001266901.1 CDS Pput_1560 NC_009512.1 1743274 1744197 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1743274..1744197 Pseudomonas putida F1 5191018 YP_001266902.1 CDS Pput_1561 NC_009512.1 1744199 1745155 D hypothetical protein 1744199..1745155 Pseudomonas putida F1 5191019 YP_001266903.1 CDS Pput_1563 NC_009512.1 1746447 1747958 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1746447..1747958 Pseudomonas putida F1 5193623 YP_001266904.1 CDS Pput_1564 NC_009512.1 1748045 1748425 D hypothetical protein 1748045..1748425 Pseudomonas putida F1 5192723 YP_001266905.1 CDS Pput_1565 NC_009512.1 1748541 1749539 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein complement(1748541..1749539) Pseudomonas putida F1 5193701 YP_001266906.1 CDS Pput_1566 NC_009512.1 1749749 1750570 R PFAM: Ion transport protein; Ion transport 2 domain protein; Ion transport protein complement(1749749..1750570) Pseudomonas putida F1 5193702 YP_001266907.1 CDS Pput_1567 NC_009512.1 1750616 1751488 R PFAM: Urea transporter; Urea transporter complement(1750616..1751488) Pseudomonas putida F1 5191193 YP_001266908.1 CDS Pput_1568 NC_009512.1 1751694 1753109 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1751694..1753109) Pseudomonas putida F1 5191194 YP_001266909.1 CDS Pput_1569 NC_009512.1 1753106 1754380 R PFAM: MOFRL domain protein; hydroxypyruvate reductase complement(1753106..1754380) Pseudomonas putida F1 5194858 YP_001266910.1 CDS Pput_1570 NC_009512.1 1754621 1755514 R TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(1754621..1755514) Pseudomonas putida F1 5194859 YP_001266911.1 CDS Pput_1571 NC_009512.1 1755667 1756449 R PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(1755667..1756449) Pseudomonas putida F1 5195253 YP_001266912.1 CDS Pput_1572 NC_009512.1 1756504 1758279 R catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase complement(1756504..1758279) Pseudomonas putida F1 5195254 YP_001266913.1 CDS Pput_1573 NC_009512.1 1758537 1758977 D PFAM: protein of unknown function DUF336; hypothetical protein 1758537..1758977 Pseudomonas putida F1 5194422 YP_001266914.1 CDS Pput_1574 NC_009512.1 1759100 1759711 R PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator complement(1759100..1759711) Pseudomonas putida F1 5194423 YP_001266915.1 CDS Pput_1575 NC_009512.1 1759844 1760758 D PFAM: protein of unknown function DUF808; hypothetical protein 1759844..1760758 Pseudomonas putida F1 5195029 YP_001266916.1 CDS Pput_1576 NC_009512.1 1760898 1761680 R hypothetical protein complement(1760898..1761680) Pseudomonas putida F1 5195030 YP_001266917.1 CDS Pput_1577 NC_009512.1 1762033 1762818 R hypothetical protein complement(1762033..1762818) Pseudomonas putida F1 5193713 YP_001266918.1 CDS Pput_1578 NC_009512.1 1762959 1764314 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease complement(1762959..1764314) Pseudomonas putida F1 5193714 YP_001266919.1 CDS Pput_1579 NC_009512.1 1764544 1765872 R PFAM: protein of unknown function DUF989; hypothetical protein complement(1764544..1765872) Pseudomonas putida F1 5190320 YP_001266920.1 CDS Pput_1580 NC_009512.1 1765917 1766420 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(1765917..1766420) Pseudomonas putida F1 5190321 YP_001266921.1 CDS Pput_1581 NC_009512.1 1766470 1766985 R hypothetical protein complement(1766470..1766985) Pseudomonas putida F1 5192669 YP_001266922.1 CDS Pput_1582 NC_009512.1 1766985 1767911 R PFAM: polysaccharide deacetylase; chitin deacetylase complement(1766985..1767911) Pseudomonas putida F1 5192670 YP_001266923.1 CDS Pput_1583 NC_009512.1 1768311 1768664 D TIGRFAM: Hydroxyisourate hydrolase; PFAM: Transthyretin; hydroxyisourate hydrolase 1768311..1768664 Pseudomonas putida F1 5194403 YP_001266924.1 CDS Pput_1584 NC_009512.1 1768973 1770322 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease complement(1768973..1770322) Pseudomonas putida F1 5194404 YP_001266925.1 CDS Pput_1585 NC_009512.1 1770570 1771361 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1770570..1771361 Pseudomonas putida F1 5194379 YP_001266926.1 CDS Pput_1586 NC_009512.1 1771511 1772209 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 1771511..1772209 Pseudomonas putida F1 5194380 YP_001266927.1 CDS Pput_1587 NC_009512.1 1772206 1773510 R Catalyzes the deamination of guanine; guanine deaminase complement(1772206..1773510) Pseudomonas putida F1 5193584 YP_001266928.1 CDS Pput_1588 NC_009512.1 1773521 1774366 R TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; xanthine dehydrogenase accessory protein XdhC complement(1773521..1774366) Pseudomonas putida F1 5193585 YP_001266929.1 CDS Pput_1589 NC_009512.1 1774539 1776938 R TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase molybdopterin binding subunit complement(1774539..1776938) Pseudomonas putida F1 5190611 YP_001266930.1 CDS Pput_1590 NC_009512.1 1776931 1778385 R TIGRFAM: Xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; xanthine dehydrogenase small subunit complement(1776931..1778385) Pseudomonas putida F1 5190612 YP_001266931.1 CDS Pput_1591 NC_009512.1 1778654 1779313 D PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator 1778654..1779313 Pseudomonas putida F1 5194027 YP_001266932.1 CDS Pput_1592 NC_009512.1 1779317 1782805 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; chromosome segregation protein SMC 1779317..1782805 Pseudomonas putida F1 5194028 YP_001266933.1 CDS zipA NC_009512.1 1783011 1783904 D interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 1783011..1783904 Pseudomonas putida F1 5193175 YP_001266934.1 CDS ligA NC_009512.1 1784140 1786470 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1784140..1786470 Pseudomonas putida F1 5193176 YP_001266935.1 CDS Pput_1595 NC_009512.1 1786821 1787240 R PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator complement(1786821..1787240) Pseudomonas putida F1 5193624 YP_001266936.1 CDS Pput_1596 NC_009512.1 1787324 1787812 D hypothetical protein 1787324..1787812 Pseudomonas putida F1 5193263 YP_001266937.1 CDS Pput_1597 NC_009512.1 1788698 1788973 D hypothetical protein 1788698..1788973 Pseudomonas putida F1 5193454 YP_001266938.1 CDS Pput_1598 NC_009512.1 1789183 1789989 R SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(1789183..1789989) Pseudomonas putida F1 5193455 YP_001266939.1 CDS Pput_1599 NC_009512.1 1790111 1792189 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1790111..1792189 Pseudomonas putida F1 5194226 YP_001266940.1 CDS Pput_1600 NC_009512.1 1792253 1792588 D PFAM: conserved hypothetical protein 103; hypothetical protein 1792253..1792588 Pseudomonas putida F1 5194227 YP_001266941.1 CDS recR NC_009512.1 1792884 1793486 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1792884..1793486 Pseudomonas putida F1 5191055 YP_001266942.1 CDS Pput_1602 NC_009512.1 1793605 1794153 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1793605..1794153) Pseudomonas putida F1 5191056 YP_001266943.1 CDS Pput_1603 NC_009512.1 1794209 1794943 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(1794209..1794943) Pseudomonas putida F1 5193852 YP_001266944.1 CDS Pput_1604 NC_009512.1 1795130 1796512 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1795130..1796512) Pseudomonas putida F1 5193853 YP_001266945.1 CDS Pput_1605 NC_009512.1 1796618 1797214 R hypothetical protein complement(1796618..1797214) Pseudomonas putida F1 5190340 YP_001266946.1 CDS Pput_1606 NC_009512.1 1797294 1797509 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein complement(1797294..1797509) Pseudomonas putida F1 5190341 YP_001266947.1 CDS Pput_1607 NC_009512.1 1797488 1799962 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(1797488..1799962) Pseudomonas putida F1 5192238 YP_001266948.1 CDS Pput_1608 NC_009512.1 1800099 1800629 R hypothetical protein complement(1800099..1800629) Pseudomonas putida F1 5192239 YP_001266949.1 CDS Pput_1609 NC_009512.1 1800645 1802063 R TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type, accessory protein FixG complement(1800645..1802063) Pseudomonas putida F1 5192217 YP_001266950.1 CDS Pput_1610 NC_009512.1 1802357 1803334 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III complement(1802357..1803334) Pseudomonas putida F1 5192218 YP_001266951.1 CDS Pput_1611 NC_009512.1 1803331 1803522 R PFAM: Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit complement(1803331..1803522) Pseudomonas putida F1 5192108 YP_001266952.1 CDS Pput_1612 NC_009512.1 1803528 1804136 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(1803528..1804136) Pseudomonas putida F1 5192109 YP_001266953.1 CDS Pput_1613 NC_009512.1 1804136 1805578 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(1804136..1805578) Pseudomonas putida F1 5194320 YP_001266954.1 CDS Pput_1614 NC_009512.1 1805580 1805855 R hypothetical protein complement(1805580..1805855) Pseudomonas putida F1 5194321 YP_001266955.1 CDS Pput_1615 NC_009512.1 1806165 1807106 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III complement(1806165..1807106) Pseudomonas putida F1 5193522 YP_001266956.1 CDS Pput_1616 NC_009512.1 1807103 1807297 R cytochrome c oxidase, cbb3-type, CcoQ subunit complement(1807103..1807297) Pseudomonas putida F1 5193523 YP_001266957.1 CDS Pput_1617 NC_009512.1 1807303 1807911 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(1807303..1807911) Pseudomonas putida F1 5190681 YP_001266958.1 CDS Pput_1618 NC_009512.1 1807925 1809349 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(1807925..1809349) Pseudomonas putida F1 5190682 YP_001266959.1 CDS Pput_1619 NC_009512.1 1809400 1810092 D hypothetical protein 1809400..1810092 Pseudomonas putida F1 5192736 YP_001266960.1 CDS Pput_1620 NC_009512.1 1810207 1810491 R PFAM: protein of unknown function DUF1255; hypothetical protein complement(1810207..1810491) Pseudomonas putida F1 5192737 YP_001266961.1 CDS Pput_1621 NC_009512.1 1810566 1811117 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease complement(1810566..1811117) Pseudomonas putida F1 5193379 YP_001266962.1 CDS Pput_1622 NC_009512.1 1811289 1812089 D SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1811289..1812089 Pseudomonas putida F1 5193380 YP_001266963.1 CDS Pput_1623 NC_009512.1 1812130 1812660 R RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor complement(1812130..1812660) Pseudomonas putida F1 5194600 YP_001266964.1 CDS Pput_1624 NC_009512.1 1812969 1825922 D catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase 1812969..1825922 Pseudomonas putida F1 5194601 YP_001266965.1 CDS Pput_1625 NC_009512.1 1825965 1826423 R multidrug ABC transporter ATPase-like protein complement(1825965..1826423) Pseudomonas putida F1 5193063 YP_001266966.1 CDS Pput_1626 NC_009512.1 1826667 1827404 R hypothetical protein complement(1826667..1827404) Pseudomonas putida F1 5193064 YP_001266967.1 CDS dsbG NC_009512.1 1828232 1828990 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(1828232..1828990) Pseudomonas putida F1 5191574 YP_001266968.1 CDS Pput_1628 NC_009512.1 1828992 1829828 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein complement(1828992..1829828) Pseudomonas putida F1 5191575 YP_001266969.1 CDS Pput_1629 NC_009512.1 1829828 1831543 R PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; protein-disulfide reductase complement(1829828..1831543) Pseudomonas putida F1 5192933 YP_001266970.1 CDS Pput_1630 NC_009512.1 1832202 1835033 D PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit 1832202..1835033 Pseudomonas putida F1 5192934 YP_001266971.1 CDS Pput_1631 NC_009512.1 1835026 1835562 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 1835026..1835562 Pseudomonas putida F1 5195222 YP_001266972.1 CDS Pput_1632 NC_009512.1 1835565 1836776 D PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 1835565..1836776 Pseudomonas putida F1 5195223 YP_001266973.1 CDS Pput_1633 NC_009512.1 1836780 1837751 D PFAM: protein of unknown function DUF182; hypothetical protein 1836780..1837751 Pseudomonas putida F1 5192076 YP_001266974.1 CDS Pput_1634 NC_009512.1 1837748 1838314 D MobA-like protein 1837748..1838314 Pseudomonas putida F1 5192077 YP_001266975.1 CDS Pput_1635 NC_009512.1 1838331 1838957 R PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein complement(1838331..1838957) Pseudomonas putida F1 5193817 YP_001266976.1 CDS Pput_1636 NC_009512.1 1838980 1839597 R PFAM: GAD-like; Domain of unknown function DUF1851; GAD-like protein complement(1838980..1839597) Pseudomonas putida F1 5193818 YP_001266977.1 CDS Pput_1637 NC_009512.1 1839616 1840962 R hypothetical protein complement(1839616..1840962) Pseudomonas putida F1 5191065 YP_001266978.1 CDS Pput_1638 NC_009512.1 1841221 1841904 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1841221..1841904 Pseudomonas putida F1 5191066 YP_001266979.1 CDS Pput_1639 NC_009512.1 1841901 1843223 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1841901..1843223 Pseudomonas putida F1 5194506 YP_001266980.1 CDS Pput_1640 NC_009512.1 1843550 1844941 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1843550..1844941 Pseudomonas putida F1 5194507 YP_001266981.1 CDS Pput_1641 NC_009512.1 1845016 1846137 R PFAM: Transcription factor jumonji; SMART: transcription factor jumonji, jmjC domain protein; transcription factor jumonji complement(1845016..1846137) Pseudomonas putida F1 5191057 YP_001266982.1 CDS Pput_1642 NC_009512.1 1846202 1847491 R PFAM: aminotransferase, class V; class V aminotransferase complement(1846202..1847491) Pseudomonas putida F1 5191058 YP_001266983.1 CDS Pput_1643 NC_009512.1 1847508 1848926 R PFAM: peptidase M19, renal dipeptidase; peptidase M19 complement(1847508..1848926) Pseudomonas putida F1 5192854 YP_001266984.1 CDS Pput_1644 NC_009512.1 1849037 1850662 D hypothetical protein 1849037..1850662 Pseudomonas putida F1 5192855 YP_001266985.1 CDS Pput_1645 NC_009512.1 1850784 1851260 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor 1850784..1851260 Pseudomonas putida F1 5192566 YP_001266986.1 CDS Pput_1646 NC_009512.1 1851429 1851908 D hypothetical protein 1851429..1851908 Pseudomonas putida F1 5192567 YP_001266987.1 CDS Pput_1647 NC_009512.1 1851981 1853306 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 1851981..1853306 Pseudomonas putida F1 5192223 YP_001266988.1 CDS Pput_1648 NC_009512.1 1853401 1853697 D hypothetical protein 1853401..1853697 Pseudomonas putida F1 5192224 YP_001266989.1 CDS Pput_1649 NC_009512.1 1853700 1854101 D SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1853700..1854101 Pseudomonas putida F1 5192441 YP_001266990.1 CDS Pput_1650 NC_009512.1 1854173 1855855 R PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(1854173..1855855) Pseudomonas putida F1 5192442 YP_001266991.1 CDS Pput_1651 NC_009512.1 1856391 1857140 D PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; electron transfer flavoprotein subunit alpha/beta-like protein 1856391..1857140 Pseudomonas putida F1 5194154 YP_001266992.1 CDS Pput_1652 NC_009512.1 1857141 1858070 D PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; electron transfer flavoprotein subunit alpha-like protein 1857141..1858070 Pseudomonas putida F1 5194155 YP_001266993.1 CDS Pput_1653 NC_009512.1 1858146 1858967 D amino acid ABC transporter periplasmic protein 1858146..1858967 Pseudomonas putida F1 5193510 YP_001266994.1 CDS Pput_1654 NC_009512.1 1858977 1859330 D hypothetical protein 1858977..1859330 Pseudomonas putida F1 5193511 YP_001266995.1 CDS Pput_1655 NC_009512.1 1859327 1860139 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1859327..1860139 Pseudomonas putida F1 5194757 YP_001266996.1 CDS Pput_1656 NC_009512.1 1860224 1861753 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1860224..1861753 Pseudomonas putida F1 5194758 YP_001266997.1 CDS Pput_1657 NC_009512.1 1861818 1862252 D hypothetical protein 1861818..1862252 Pseudomonas putida F1 5190550 YP_001266998.1 CDS Pput_1658 NC_009512.1 1862382 1862636 D PFAM: protein of unknown function UPF0153; hypothetical protein 1862382..1862636 Pseudomonas putida F1 5190551 YP_001266999.1 CDS Pput_1659 NC_009512.1 1862667 1863275 D PFAM: lipid-binding START domain protein; lipid-binding START domain-containing protein 1862667..1863275 Pseudomonas putida F1 5193296 YP_001267000.1 CDS gltA NC_009512.1 1863389 1864678 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(1863389..1864678) Pseudomonas putida F1 5193297 YP_001267001.1 CDS Pput_1661 NC_009512.1 1865031 1865417 D TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 1865031..1865417 Pseudomonas putida F1 5194656 YP_001267002.1 CDS Pput_1662 NC_009512.1 1865411 1865779 D TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; succinate dehydrogenase, hydrophobic membrane anchor protein 1865411..1865779 Pseudomonas putida F1 5194657 YP_001267003.1 CDS sdhA NC_009512.1 1865783 1867555 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1865783..1867555 Pseudomonas putida F1 5194267 YP_001267004.1 CDS sdhB NC_009512.1 1867567 1868271 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1867567..1868271 Pseudomonas putida F1 5194268 YP_001267005.1 CDS sucA NC_009512.1 1868518 1871349 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1868518..1871349 Pseudomonas putida F1 5193034 YP_001267006.1 CDS Pput_1666 NC_009512.1 1871392 1872615 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1871392..1872615 Pseudomonas putida F1 5193035 YP_001267007.1 CDS Pput_1667 NC_009512.1 1872709 1874145 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1872709..1874145 Pseudomonas putida F1 5194986 YP_001267008.1 CDS sucC NC_009512.1 1874317 1875483 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1874317..1875483 Pseudomonas putida F1 5194987 YP_001267009.1 CDS Pput_1669 NC_009512.1 1875483 1876367 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1875483..1876367 Pseudomonas putida F1 5194636 YP_001267010.1 CDS Pput_1670 NC_009512.1 1876771 1878084 D PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 1876771..1878084 Pseudomonas putida F1 5194637 YP_001267011.1 CDS Pput_1671 NC_009512.1 1878320 1879069 D PFAM: protein of unknown function DUF599; hypothetical protein 1878320..1879069 Pseudomonas putida F1 5193220 YP_001267012.1 CDS Pput_1672 NC_009512.1 1879097 1879639 R hypothetical protein complement(1879097..1879639) Pseudomonas putida F1 5193221 YP_001267013.1 CDS Pput_1673 NC_009512.1 1879636 1880832 R PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase complement(1879636..1880832) Pseudomonas putida F1 5190489 YP_001267014.1 CDS Pput_1674 NC_009512.1 1881082 1896774 D TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1881082..1896774 Pseudomonas putida F1 5190490 YP_001267015.1 CDS Pput_1675 NC_009512.1 1896774 1900163 D TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1896774..1900163 Pseudomonas putida F1 5195251 YP_001267016.1 CDS Pput_1676 NC_009512.1 1900176 1910474 D TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1900176..1910474 Pseudomonas putida F1 5195252 YP_001267017.1 CDS Pput_1677 NC_009512.1 1910471 1913647 D TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 1910471..1913647 Pseudomonas putida F1 5193762 YP_001267018.1 CDS Pput_1678 NC_009512.1 1913956 1916448 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1913956..1916448 Pseudomonas putida F1 5193763 YP_001267019.1 CDS Pput_1679 NC_009512.1 1916506 1917384 R PFAM: protein of unknown function DUF323; hypothetical protein complement(1916506..1917384) Pseudomonas putida F1 5192778 YP_001267020.1 CDS Pput_1680 NC_009512.1 1917422 1921639 R TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein complement(1917422..1921639) Pseudomonas putida F1 5192779 YP_001267021.1 CDS Pput_1681 NC_009512.1 1921846 1923534 R TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter complement(1921846..1923534) Pseudomonas putida F1 5193923 YP_001267022.1 CDS Pput_1682 NC_009512.1 1923518 1924537 R hypothetical protein complement(1923518..1924537) Pseudomonas putida F1 5193924 YP_001267023.1 CDS Pput_1683 NC_009512.1 1924614 1926053 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(1924614..1926053) Pseudomonas putida F1 5195453 YP_001267024.1 CDS Pput_1684 NC_009512.1 1926050 1928020 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; ABC transporter-like protein complement(1926050..1928020) Pseudomonas putida F1 5195454 YP_001267025.1 CDS Pput_1685 NC_009512.1 1928021 1929184 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(1928021..1929184) Pseudomonas putida F1 5194103 YP_001267026.1 CDS Pput_1686 NC_009512.1 1929390 1929662 R hypothetical protein complement(1929390..1929662) Pseudomonas putida F1 5194104 YP_001267027.1 CDS Pput_1687 NC_009512.1 1929817 1930293 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1929817..1930293 Pseudomonas putida F1 5192120 YP_001267028.1 CDS Pput_1688 NC_009512.1 1930290 1930772 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1930290..1930772 Pseudomonas putida F1 5192121 YP_001267029.1 CDS Pput_1689 NC_009512.1 1930842 1932746 D molecular chaperone; heat shock protein 90 1930842..1932746 Pseudomonas putida F1 5194037 YP_001267030.1 CDS Pput_1690 NC_009512.1 1932810 1933535 D PFAM: dienelactone hydrolase; dienelactone hydrolase 1932810..1933535 Pseudomonas putida F1 5194038 YP_001267031.1 CDS Pput_1691 NC_009512.1 1933825 1934688 R PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein complement(1933825..1934688) Pseudomonas putida F1 5194604 YP_001267032.1 CDS Pput_1692 NC_009512.1 1934791 1935813 D PFAM: amidohydrolase 2; amidohydrolase 2 1934791..1935813 Pseudomonas putida F1 5194605 YP_001267033.1 CDS Pput_1693 NC_009512.1 1935971 1937191 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(1935971..1937191) Pseudomonas putida F1 5194548 YP_001267034.1 CDS Pput_1694 NC_009512.1 1937203 1937718 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1937203..1937718) Pseudomonas putida F1 5194549 YP_001267035.1 CDS Pput_1695 NC_009512.1 1937926 1939857 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase complement(1937926..1939857) Pseudomonas putida F1 5194732 YP_001267036.1 CDS Pput_1696 NC_009512.1 1939854 1940744 R hypothetical protein complement(1939854..1940744) Pseudomonas putida F1 5194733 YP_001267037.1 CDS Pput_1697 NC_009512.1 1940744 1942858 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(1940744..1942858) Pseudomonas putida F1 5194990 YP_001267038.1 CDS gpsA NC_009512.1 1943134 1944159 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1943134..1944159 Pseudomonas putida F1 5194991 YP_001267039.1 CDS Pput_1699 NC_009512.1 1944196 1944543 D hypothetical protein 1944196..1944543 Pseudomonas putida F1 5195247 YP_001267040.1 CDS Pput_1700 NC_009512.1 1944540 1944998 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase SixA 1944540..1944998 Pseudomonas putida F1 5195248 YP_001267041.1 CDS Pput_1701 NC_009512.1 1945149 1945535 D hypothetical protein 1945149..1945535 Pseudomonas putida F1 5194241 YP_001267042.1 CDS Pput_1702 NC_009512.1 1945553 1946416 D hypothetical protein 1945553..1946416 Pseudomonas putida F1 5194242 YP_001267043.1 CDS Pput_1703 NC_009512.1 1946413 1947267 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 1946413..1947267 Pseudomonas putida F1 5192495 YP_001267044.1 CDS Pput_1704 NC_009512.1 1947377 1948171 D hypothetical protein 1947377..1948171 Pseudomonas putida F1 5192496 YP_001267045.1 CDS Pput_1705 NC_009512.1 1948184 1949233 D PFAM: protein of unknown function UPF0118; hypothetical protein 1948184..1949233 Pseudomonas putida F1 5192474 YP_001267046.1 CDS Pput_1706 NC_009512.1 1949472 1949561 D TIGRFAM: K+-transporting ATPase, F subunit; K+-transporting ATPase F 1949472..1949561 Pseudomonas putida F1 5192475 YP_001267047.1 CDS Pput_1707 NC_009512.1 1949571 1951265 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase A 1949571..1951265 Pseudomonas putida F1 5192748 YP_001267048.1 CDS Pput_1708 NC_009512.1 1951275 1953329 D One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase B 1951275..1953329 Pseudomonas putida F1 5192749 YP_001267049.1 CDS Pput_1709 NC_009512.1 1953340 1953897 D One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase C 1953340..1953897 Pseudomonas putida F1 5193288 YP_001267050.1 CDS Pput_1710 NC_009512.1 1954047 1956701 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 1954047..1956701 Pseudomonas putida F1 5193289 YP_001267051.1 CDS Pput_1711 NC_009512.1 1956698 1957393 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1956698..1957393 Pseudomonas putida F1 5190732 YP_001267052.1 CDS Pput_1712 NC_009512.1 1957441 1958346 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1957441..1958346) Pseudomonas putida F1 5190733 YP_001267053.1 CDS Pput_1713 NC_009512.1 1958417 1961347 R PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; hypothetical protein complement(1958417..1961347) Pseudomonas putida F1 5192106 YP_001267054.1 CDS Pput_1714 NC_009512.1 1961539 1963728 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1961539..1963728 Pseudomonas putida F1 5192107 YP_001267055.1 CDS Pput_1715 NC_009512.1 1963898 1965505 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(1963898..1965505) Pseudomonas putida F1 5190860 YP_001267056.1 CDS Pput_1716 NC_009512.1 1965507 1966526 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1965507..1966526) Pseudomonas putida F1 5190861 YP_001267057.1 CDS Pput_1717 NC_009512.1 1966528 1967601 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1966528..1967601) Pseudomonas putida F1 5192881 YP_001267058.1 CDS Pput_1718 NC_009512.1 1967603 1969438 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1967603..1969438) Pseudomonas putida F1 5192882 YP_001267059.1 CDS Pput_1719 NC_009512.1 1969435 1971375 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(1969435..1971375) Pseudomonas putida F1 5191444 YP_001267060.1 CDS Pput_1720 NC_009512.1 1971485 1972915 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; MltD domain-containing protein complement(1971485..1972915) Pseudomonas putida F1 5191445 YP_001267061.1 CDS Pput_1721 NC_009512.1 1973016 1973795 R PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(1973016..1973795) Pseudomonas putida F1 5190435 YP_001267062.1 CDS Pput_1722 NC_009512.1 1973881 1974654 D hypothetical protein 1973881..1974654 Pseudomonas putida F1 5190436 YP_001267063.1 CDS rnhA NC_009512.1 1974670 1975116 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1974670..1975116 Pseudomonas putida F1 5191428 YP_001267064.1 CDS Pput_1724 NC_009512.1 1975167 1975925 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1975167..1975925 Pseudomonas putida F1 5191429 YP_001267065.1 CDS Pput_1725 NC_009512.1 1976191 1978440 D PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 1976191..1978440 Pseudomonas putida F1 5191148 YP_001267066.1 CDS Pput_1726 NC_009512.1 1978424 1978642 R hypothetical protein complement(1978424..1978642) Pseudomonas putida F1 5191149 YP_001267067.1 CDS Pput_1727 NC_009512.1 1978799 1979359 D PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1978799..1979359 Pseudomonas putida F1 5190254 YP_001267068.1 CDS Pput_1728 NC_009512.1 1979463 1981535 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor complement(1979463..1981535) Pseudomonas putida F1 5190255 YP_001267069.1 CDS Pput_1729 NC_009512.1 1981756 1982004 D PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; LuxR family transcriptional regulator 1981756..1982004 Pseudomonas putida F1 5190836 YP_001267070.1 CDS Pput_1730 NC_009512.1 1982017 1982364 D hypothetical protein 1982017..1982364 Pseudomonas putida F1 5190837 YP_001267071.1 CDS Pput_1731 NC_009512.1 1982357 1982719 D hypothetical protein 1982357..1982719 Pseudomonas putida F1 5193618 YP_001267072.1 CDS Pput_1732 NC_009512.1 1982716 1983093 R PFAM: bacteriophage CI repressor; bacteriophage CI repressor complement(1982716..1983093) Pseudomonas putida F1 5193619 YP_001267073.1 CDS Pput_1733 NC_009512.1 1983273 1983536 D PFAM: phage transcriptional activator, Ogr/delta; phage transcriptional activator, Ogr/delta 1983273..1983536 Pseudomonas putida F1 5192421 YP_001267074.1 CDS Pput_1734 NC_009512.1 1983627 1985096 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(1983627..1985096) Pseudomonas putida F1 5192422 YP_001267075.1 CDS Pput_1735 NC_009512.1 1985104 1986636 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(1985104..1986636) Pseudomonas putida F1 5190417 YP_001267076.1 CDS Pput_1736 NC_009512.1 1986677 1988530 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(1986677..1988530) Pseudomonas putida F1 5190418 YP_001267077.1 CDS Pput_1737 NC_009512.1 1988527 1988835 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(1988527..1988835) Pseudomonas putida F1 5191917 YP_001267078.1 CDS Pput_1738 NC_009512.1 1988839 1989339 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(1988839..1989339) Pseudomonas putida F1 5191918 YP_001267079.1 CDS Pput_1739 NC_009512.1 1989350 1989898 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1989350..1989898) Pseudomonas putida F1 5193952 YP_001267080.1 CDS Pput_1740 NC_009512.1 1989910 1990917 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1989910..1990917) Pseudomonas putida F1 5193953 YP_001267081.1 CDS Pput_1741 NC_009512.1 1990914 1993628 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(1990914..1993628) Pseudomonas putida F1 5192792 YP_001267082.1 CDS Pput_1742 NC_009512.1 1993761 1995122 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F complement(1993761..1995122) Pseudomonas putida F1 5192793 YP_001267083.1 CDS Pput_1743 NC_009512.1 1995119 1995616 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(1995119..1995616) Pseudomonas putida F1 5193821 YP_001267084.1 CDS Pput_1744 NC_009512.1 1995619 1997400 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(1995619..1997400) Pseudomonas putida F1 5193822 YP_001267085.1 CDS Pput_1745 NC_009512.1 1997480 1998157 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1997480..1998157) Pseudomonas putida F1 5192206 YP_001267086.1 CDS Pput_1746 NC_009512.1 1998167 1998580 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(1998167..1998580) Pseudomonas putida F1 5192207 YP_001267087.1 CDS Pput_1747 NC_009512.1 1998964 1999626 R PFAM: YhhN family protein; hypothetical protein complement(1998964..1999626) Pseudomonas putida F1 5193641 YP_001267088.1 CDS Pput_1748 NC_009512.1 1999917 2001242 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase complement(1999917..2001242) Pseudomonas putida F1 5193642 YP_001267089.1 CDS Pput_1749 NC_009512.1 2001733 2002467 R PFAM: NolW domain protein; NolW domain-containing protein complement(2001733..2002467) Pseudomonas putida F1 5191358 YP_001267090.1 CDS Pput_1750 NC_009512.1 2002623 2003798 D hypothetical protein 2002623..2003798 Pseudomonas putida F1 5191359 YP_001267091.1 CDS Pput_1751 NC_009512.1 2003852 2005561 D PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 2003852..2005561 Pseudomonas putida F1 5194209 YP_001267092.1 CDS Pput_1752 NC_009512.1 2005645 2007087 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 2005645..2007087 Pseudomonas putida F1 5194210 YP_001267093.1 CDS Pput_1753 NC_009512.1 2007200 2009311 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2007200..2009311) Pseudomonas putida F1 5194101 YP_001267094.1 CDS Pput_1754 NC_009512.1 2009385 2009867 R hypothetical protein complement(2009385..2009867) Pseudomonas putida F1 5194102 YP_001267095.1 CDS Pput_1755 NC_009512.1 2010057 2010359 D hypothetical protein 2010057..2010359 Pseudomonas putida F1 5194630 YP_001267096.1 CDS Pput_1756 NC_009512.1 2010363 2011613 R PFAM: aminotransferase class-III; class III aminotransferase complement(2010363..2011613) Pseudomonas putida F1 5194631 YP_001267097.1 CDS Pput_1757 NC_009512.1 2011794 2012690 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2011794..2012690) Pseudomonas putida F1 5193602 YP_001267098.1 CDS Pput_1758 NC_009512.1 2012948 2014330 D PFAM: Spore germination protein; amino acid permease-associated region; amino acid permease-associated protein 2012948..2014330 Pseudomonas putida F1 5193603 YP_001267099.1 CDS Pput_1759 NC_009512.1 2014388 2014885 D hypothetical protein 2014388..2014885 Pseudomonas putida F1 5192637 YP_001267100.1 CDS Pput_1760 NC_009512.1 2014973 2015668 D PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2014973..2015668 Pseudomonas putida F1 5192638 YP_001267101.1 CDS Pput_1761 NC_009512.1 2015849 2017465 R PFAM: phosphate transporter; phosphate transporter complement(2015849..2017465) Pseudomonas putida F1 5192394 YP_001267102.1 CDS Pput_1762 NC_009512.1 2017595 2017981 D PFAM: protein of unknown function DUF488; hypothetical protein 2017595..2017981 Pseudomonas putida F1 5192395 YP_001267103.1 CDS Pput_1763 NC_009512.1 2017992 2018435 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2017992..2018435 Pseudomonas putida F1 5191326 YP_001267104.1 CDS Pput_1764 NC_009512.1 2018543 2018932 D SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2018543..2018932 Pseudomonas putida F1 5191327 YP_001267105.1 CDS Pput_1765 NC_009512.1 2018996 2019634 D PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2018996..2019634 Pseudomonas putida F1 5192116 YP_001267106.1 CDS uvrC NC_009512.1 2019641 2021464 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2019641..2021464 Pseudomonas putida F1 5192117 YP_001267107.1 CDS Pput_1767 NC_009512.1 2021498 2022058 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2021498..2022058 Pseudomonas putida F1 5190284 YP_001267108.1 CDS Pput_1768 NC_009512.1 2022355 2023032 R protein-disulfide isomerase-like protein complement(2022355..2023032) Pseudomonas putida F1 5190602 YP_001267109.1 CDS Pput_1770 NC_009512.1 2023705 2024220 R PFAM: Sigma-70, region 4 type 2; sigma-70 factor complement(2023705..2024220) Pseudomonas putida F1 5193901 YP_001267110.1 CDS Pput_1771 NC_009512.1 2024669 2024968 R hypothetical protein complement(2024669..2024968) Pseudomonas putida F1 5194169 YP_001267111.1 CDS Pput_1772 NC_009512.1 2025099 2025752 D PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative prophage repressor 2025099..2025752 Pseudomonas putida F1 5192161 YP_001267112.1 CDS Pput_1773 NC_009512.1 2025809 2026483 D PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative prophage repressor 2025809..2026483 Pseudomonas putida F1 5192162 YP_001267113.1 CDS Pput_1774 NC_009512.1 2026631 2028583 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L complement(2026631..2028583) Pseudomonas putida F1 5194923 YP_001267114.1 CDS Pput_1775 NC_009512.1 2028580 2029395 R catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase complement(2028580..2029395) Pseudomonas putida F1 5194924 YP_001267115.1 CDS Pput_1776 NC_009512.1 2029399 2031006 R PFAM: carboxyl transferase; propionyl-CoA carboxylase complement(2029399..2031006) Pseudomonas putida F1 5194514 YP_001267116.1 CDS Pput_1777 NC_009512.1 2031026 2032189 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(2031026..2032189) Pseudomonas putida F1 5194515 YP_001267117.1 CDS Pput_1778 NC_009512.1 2032514 2034196 D activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 2032514..2034196 Pseudomonas putida F1 5192004 YP_001267118.1 CDS Pput_1780 NC_009512.1 2034635 2035492 R hypothetical protein complement(2034635..2035492) Pseudomonas putida F1 5192509 YP_001267119.1 CDS Pput_1782 NC_009512.1 2036341 2037477 R hypothetical protein complement(2036341..2037477) Pseudomonas putida F1 5192510 YP_001267120.1 CDS Pput_1783 NC_009512.1 2038006 2040024 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 2038006..2040024 Pseudomonas putida F1 5192947 YP_001267121.1 CDS Pput_1784 NC_009512.1 2040179 2043499 D TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 2040179..2043499 Pseudomonas putida F1 5192542 YP_001267122.1 CDS Pput_1785 NC_009512.1 2043496 2045706 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2043496..2045706 Pseudomonas putida F1 5192543 YP_001267123.1 CDS Pput_1786 NC_009512.1 2045921 2046997 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; outer membrane autotransporter complement(2045921..2046997) Pseudomonas putida F1 5191088 YP_001267124.1 CDS Pput_1787 NC_009512.1 2047315 2048109 R PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(2047315..2048109) Pseudomonas putida F1 5191089 YP_001267125.1 CDS Pput_1788 NC_009512.1 2048231 2050384 R TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX complement(2048231..2050384) Pseudomonas putida F1 5191700 YP_001267126.1 CDS Pput_1789 NC_009512.1 2050519 2050785 R hypothetical protein complement(2050519..2050785) Pseudomonas putida F1 5191701 YP_001267127.1 CDS Pput_1790 NC_009512.1 2050800 2053574 R TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; maltooligosyl trehalose synthase complement(2050800..2053574) Pseudomonas putida F1 5191476 YP_001267128.1 CDS Pput_1791 NC_009512.1 2053571 2055640 R TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase complement(2053571..2055640) Pseudomonas putida F1 5191477 YP_001267129.1 CDS Pput_1792 NC_009512.1 2055637 2057379 R TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase complement(2055637..2057379) Pseudomonas putida F1 5193905 YP_001267130.1 CDS glgA NC_009512.1 2057394 2058953 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(2057394..2058953) Pseudomonas putida F1 5193906 YP_001267131.1 CDS Pput_1794 NC_009512.1 2059602 2059757 R hypothetical protein complement(2059602..2059757) Pseudomonas putida F1 5190744 YP_001267132.1 CDS Pput_1795 NC_009512.1 2059972 2060955 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2059972..2060955 Pseudomonas putida F1 5190745 YP_001267133.1 CDS Pput_1796 NC_009512.1 2060952 2062457 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2060952..2062457 Pseudomonas putida F1 5191777 YP_001267134.1 CDS Pput_1797 NC_009512.1 2062573 2064369 D PFAM: glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 2062573..2064369 Pseudomonas putida F1 5191778 YP_001267135.1 CDS Pput_1798 NC_009512.1 2064436 2064792 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2064436..2064792 Pseudomonas putida F1 5192828 YP_001267136.1 CDS Pput_1799 NC_009512.1 2064792 2065412 D PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 2064792..2065412 Pseudomonas putida F1 5192829 YP_001267137.1 CDS Pput_1800 NC_009512.1 2065593 2066867 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(2065593..2066867) Pseudomonas putida F1 5190419 YP_001267138.1 CDS Pput_1801 NC_009512.1 2066868 2068304 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(2066868..2068304) Pseudomonas putida F1 5190420 YP_001267139.1 CDS Pput_1802 NC_009512.1 2068418 2069908 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(2068418..2069908) Pseudomonas putida F1 5190933 YP_001267140.1 CDS Pput_1803 NC_009512.1 2070201 2071691 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2070201..2071691 Pseudomonas putida F1 5190934 YP_001267141.1 CDS Pput_1804 NC_009512.1 2071741 2073024 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2071741..2073024 Pseudomonas putida F1 5193791 YP_001267142.1 CDS Pput_1805 NC_009512.1 2073021 2073980 R PFAM: beta-lactamase domain protein; ribonuclease Z complement(2073021..2073980) Pseudomonas putida F1 5193792 YP_001267143.1 CDS Pput_1806 NC_009512.1 2074068 2074613 R PFAM: Lipocalin family protein; lipocalin family protein complement(2074068..2074613) Pseudomonas putida F1 5193936 YP_001267144.1 CDS nhaB NC_009512.1 2074760 2076262 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(2074760..2076262) Pseudomonas putida F1 5193937 YP_001267145.1 CDS Pput_1808 NC_009512.1 2076383 2077225 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2076383..2077225 Pseudomonas putida F1 5192024 YP_001267146.1 CDS nudC NC_009512.1 2077262 2078092 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2077262..2078092 Pseudomonas putida F1 5192025 YP_001267147.1 CDS Pput_1810 NC_009512.1 2078161 2078940 R PFAM: protein of unknown function DUF81; hypothetical protein complement(2078161..2078940) Pseudomonas putida F1 5193942 YP_001267148.1 CDS Pput_1811 NC_009512.1 2079086 2079997 R hypothetical protein complement(2079086..2079997) Pseudomonas putida F1 5193943 YP_001267149.1 CDS Pput_1812 NC_009512.1 2080227 2081057 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(2080227..2081057) Pseudomonas putida F1 5193707 YP_001267150.1 CDS Pput_1813 NC_009512.1 2081243 2082532 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2081243..2082532) Pseudomonas putida F1 5193708 YP_001267151.1 CDS Pput_1814 NC_009512.1 2082725 2084686 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2082725..2084686) Pseudomonas putida F1 5193946 YP_001267152.1 CDS Pput_1815 NC_009512.1 2084895 2085323 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2084895..2085323) Pseudomonas putida F1 5193947 YP_001267153.1 CDS Pput_1816 NC_009512.1 2085316 2086482 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; cupin 4 family protein complement(2085316..2086482) Pseudomonas putida F1 5191521 YP_001267154.1 CDS Pput_1817 NC_009512.1 2086564 2087982 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2086564..2087982) Pseudomonas putida F1 5191522 YP_001267155.1 CDS Pput_1818 NC_009512.1 2088093 2088719 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(2088093..2088719) Pseudomonas putida F1 5193838 YP_001267156.1 CDS mnmA NC_009512.1 2088716 2089840 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2088716..2089840) Pseudomonas putida F1 5193839 YP_001267157.1 CDS Pput_1820 NC_009512.1 2089900 2090340 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(2089900..2090340) Pseudomonas putida F1 5194089 YP_001267158.1 CDS Pput_1821 NC_009512.1 2090547 2092850 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(2090547..2092850) Pseudomonas putida F1 5194090 YP_001267159.1 CDS Pput_1822 NC_009512.1 2093187 2094443 D TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 2093187..2094443 Pseudomonas putida F1 5194350 YP_001267160.1 CDS Pput_1823 NC_009512.1 2094515 2094781 R TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(2094515..2094781) Pseudomonas putida F1 5194351 YP_001267161.1 CDS clpS NC_009512.1 2095012 2095374 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2095012..2095374 Pseudomonas putida F1 5194698 YP_001267162.1 CDS Pput_1825 NC_009512.1 2095405 2097675 D TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2095405..2097675 Pseudomonas putida F1 5194699 YP_001267163.1 CDS infA NC_009512.1 2097761 2097979 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2097761..2097979) Pseudomonas putida F1 5194526 YP_001267164.1 CDS Pput_1827 NC_009512.1 2098081 2098788 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2098081..2098788) Pseudomonas putida F1 5194527 YP_001267165.1 CDS aat NC_009512.1 2098845 2099525 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2098845..2099525) Pseudomonas putida F1 5195042 YP_001267166.1 CDS Pput_1829 NC_009512.1 2099933 2102428 D PFAM: cell divisionFtsK/SpoIIIE; cell division protein FtsK 2099933..2102428 Pseudomonas putida F1 5195043 YP_001267167.1 CDS lolA NC_009512.1 2102491 2103114 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2102491..2103114 Pseudomonas putida F1 5195298 YP_001267168.1 CDS Pput_1831 NC_009512.1 2103127 2104452 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; recombination factor protein RarA 2103127..2104452 Pseudomonas putida F1 5195299 YP_001267169.1 CDS Pput_1832 NC_009512.1 2104449 2104823 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2104449..2104823 Pseudomonas putida F1 5191138 YP_001267170.1 CDS Pput_1833 NC_009512.1 2104854 2106134 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2104854..2106134 Pseudomonas putida F1 5191139 YP_001267171.1 CDS Pput_1834 NC_009512.1 2106135 2107526 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 2106135..2107526 Pseudomonas putida F1 5193098 YP_001267172.1 CDS Pput_1835 NC_009512.1 2107632 2108591 R glutathione S-transferase-like protein complement(2107632..2108591) Pseudomonas putida F1 5193099 YP_001267173.1 CDS Pput_1836 NC_009512.1 2108686 2109687 R PFAM: glycosyl transferase, family 3; hypothetical protein complement(2108686..2109687) Pseudomonas putida F1 5192337 YP_001267174.1 CDS Pput_1837 NC_009512.1 2109684 2110019 R PFAM: DsrC family protein; DsrC family protein complement(2109684..2110019) Pseudomonas putida F1 5192338 YP_001267175.1 CDS Pput_1838 NC_009512.1 2110016 2110312 R PFAM: DsrH family protein; DsrH family protein complement(2110016..2110312) Pseudomonas putida F1 5194375 YP_001267176.1 CDS Pput_1839 NC_009512.1 2110312 2110671 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(2110312..2110671) Pseudomonas putida F1 5194376 YP_001267177.1 CDS Pput_1840 NC_009512.1 2110673 2111104 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(2110673..2111104) Pseudomonas putida F1 5194340 YP_001267178.1 CDS Pput_1841 NC_009512.1 2111161 2112540 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease complement(2111161..2112540) Pseudomonas putida F1 5194341 YP_001267179.1 CDS Pput_1842 NC_009512.1 2112855 2113526 R PFAM: protein of unknown function UPF0005; hypothetical protein complement(2112855..2113526) Pseudomonas putida F1 5195015 YP_001267180.1 CDS Pput_1844 NC_009512.1 2114710 2115477 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2114710..2115477 Pseudomonas putida F1 5192720 YP_001267181.1 CDS Pput_1845 NC_009512.1 2115513 2116391 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2115513..2116391) Pseudomonas putida F1 5193960 YP_001267182.1 CDS Pput_1846 NC_009512.1 2116570 2117847 D PFAM: ribulose bisphosphate carboxylase, large chain; RuBisCO-like protein 2116570..2117847 Pseudomonas putida F1 5193961 YP_001267183.1 CDS Pput_1847 NC_009512.1 2117851 2119242 D PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer 2117851..2119242 Pseudomonas putida F1 5193793 YP_001267184.1 CDS Pput_1848 NC_009512.1 2119303 2120646 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2119303..2120646 Pseudomonas putida F1 5193794 YP_001267185.1 CDS Pput_1849 NC_009512.1 2120753 2122222 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2120753..2122222 Pseudomonas putida F1 5193406 YP_001267186.1 CDS Pput_1850 NC_009512.1 2122550 2123818 D PFAM: enolase; phosphopyruvate hydratase 2122550..2123818 Pseudomonas putida F1 5193407 YP_001267187.1 CDS Pput_1852 NC_009512.1 2125589 2126491 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2125589..2126491) Pseudomonas putida F1 5192721 YP_001267188.1 CDS Pput_1853 NC_009512.1 2126622 2127368 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2126622..2127368 Pseudomonas putida F1 5190789 YP_001267189.1 CDS Pput_1854 NC_009512.1 2127472 2128155 D PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2127472..2128155 Pseudomonas putida F1 5192379 YP_001267190.1 CDS Pput_1855 NC_009512.1 2128175 2128981 D PFAM: protein of unknown function UPF0153; hypothetical protein 2128175..2128981 Pseudomonas putida F1 5192380 YP_001267191.1 CDS Pput_1857 NC_009512.1 2129457 2129837 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2129457..2129837) Pseudomonas putida F1 5191494 YP_001267192.1 CDS Pput_1858 NC_009512.1 2130002 2130688 R PFAM: isochorismatase hydrolase; isochorismatase hydrolase complement(2130002..2130688) Pseudomonas putida F1 5192918 YP_001267193.1 CDS Pput_1859 NC_009512.1 2130896 2131357 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2130896..2131357 Pseudomonas putida F1 5190945 YP_001267194.1 CDS Pput_1860 NC_009512.1 2131377 2132363 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2131377..2132363) Pseudomonas putida F1 5190946 YP_001267195.1 CDS Pput_1861 NC_009512.1 2132654 2132926 D PFAM: Propeptide, PepSY amd peptidase M4; peptidase 2132654..2132926 Pseudomonas putida F1 5192931 YP_001267196.1 CDS Pput_1862 NC_009512.1 2133096 2133422 R hypothetical protein complement(2133096..2133422) Pseudomonas putida F1 5192932 YP_001267197.1 CDS Pput_1863 NC_009512.1 2133774 2134568 R PFAM: protein of unknown function DUF1264; hypothetical protein complement(2133774..2134568) Pseudomonas putida F1 5190623 YP_001267198.1 CDS Pput_1865 NC_009512.1 2135381 2136589 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2135381..2136589 Pseudomonas putida F1 5191495 YP_001267199.1 CDS Pput_1866 NC_009512.1 2136746 2137351 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2136746..2137351 Pseudomonas putida F1 5193536 YP_001267200.1 CDS Pput_1867 NC_009512.1 2137453 2138814 R PFAM: Chloride channel, core; chloride channel core protein complement(2137453..2138814) Pseudomonas putida F1 5193537 YP_001267201.1 CDS Pput_1868 NC_009512.1 2138951 2140312 R PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(2138951..2140312) Pseudomonas putida F1 5194826 YP_001267202.1 CDS Pput_1869 NC_009512.1 2140860 2142314 R PFAM: cation transporter; cation transporter complement(2140860..2142314) Pseudomonas putida F1 5194827 YP_001267203.1 CDS Pput_1870 NC_009512.1 2142682 2143323 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2142682..2143323) Pseudomonas putida F1 5195549 YP_001267204.1 CDS Pput_1871 NC_009512.1 2143332 2144027 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2143332..2144027) Pseudomonas putida F1 5195550 YP_001267205.1 CDS Pput_1872 NC_009512.1 2144419 2146584 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2144419..2146584 Pseudomonas putida F1 5190532 YP_001267206.1 CDS Pput_1874 NC_009512.1 2147061 2147687 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(2147061..2147687) Pseudomonas putida F1 5195447 YP_001267207.1 CDS Pput_1875 NC_009512.1 2147684 2148532 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(2147684..2148532) Pseudomonas putida F1 5192151 YP_001267208.1 CDS Pput_1876 NC_009512.1 2148608 2149333 R PFAM: Oligogalacturonate-specific porin; oligogalacturonate-specific porin complement(2148608..2149333) Pseudomonas putida F1 5192152 YP_001267209.1 CDS Pput_1877 NC_009512.1 2149675 2150829 D PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 2149675..2150829 Pseudomonas putida F1 5192758 YP_001267210.1 CDS Pput_1878 NC_009512.1 2150899 2152509 D PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2150899..2152509 Pseudomonas putida F1 5192759 YP_001267211.1 CDS Pput_1879 NC_009512.1 2152554 2153591 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2152554..2153591 Pseudomonas putida F1 5194854 YP_001267212.1 CDS Pput_1880 NC_009512.1 2153640 2155250 D PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2153640..2155250 Pseudomonas putida F1 5194855 YP_001267213.1 CDS Pput_1881 NC_009512.1 2155312 2156226 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2155312..2156226 Pseudomonas putida F1 5194502 YP_001267214.1 CDS Pput_1882 NC_009512.1 2156238 2157077 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2156238..2157077 Pseudomonas putida F1 5194503 YP_001267215.1 CDS Pput_1883 NC_009512.1 2157089 2157865 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2157089..2157865 Pseudomonas putida F1 5191006 YP_001267216.1 CDS Pput_1884 NC_009512.1 2157894 2159714 D PFAM: glycoside hydrolase, family 28; Fibronectin, type III domain protein; glycoside hydrolase 2157894..2159714 Pseudomonas putida F1 5191007 YP_001267217.1 CDS Pput_1885 NC_009512.1 2159699 2160445 R PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; GntR domain protein; GntR family transcriptional regulator complement(2159699..2160445) Pseudomonas putida F1 5190776 YP_001267218.1 CDS Pput_1886 NC_009512.1 2160542 2161270 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2160542..2161270 Pseudomonas putida F1 5190777 YP_001267219.1 CDS Pput_1887 NC_009512.1 2161444 2161782 R xanthine and Co dehydrogenase maturation factor complement(2161444..2161782) Pseudomonas putida F1 5193889 YP_001267220.1 CDS Pput_1888 NC_009512.1 2161923 2162561 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2161923..2162561 Pseudomonas putida F1 5193890 YP_001267221.1 CDS Pput_1889 NC_009512.1 2162565 2166128 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; cytochrome c, class I; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(2162565..2166128) Pseudomonas putida F1 5192809 YP_001267222.1 CDS Pput_1890 NC_009512.1 2166125 2166598 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2166125..2166598) Pseudomonas putida F1 5192810 YP_001267223.1 CDS Pput_1891 NC_009512.1 2167036 2167512 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(2167036..2167512) Pseudomonas putida F1 5195261 YP_001267224.1 CDS Pput_1892 NC_009512.1 2167583 2168635 R hypothetical protein complement(2167583..2168635) Pseudomonas putida F1 5195262 YP_001267225.1 CDS Pput_1893 NC_009512.1 2168958 2170106 D PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; FAD-binding monooxygenase 2168958..2170106 Pseudomonas putida F1 5191765 YP_001267226.1 CDS Pput_1894 NC_009512.1 2170103 2170909 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2170103..2170909 Pseudomonas putida F1 5191766 YP_001267227.1 CDS Pput_1895 NC_009512.1 2170923 2171675 D PFAM: Asp/Glu racemase; Asp/Glu racemase 2170923..2171675 Pseudomonas putida F1 5190222 YP_001267228.1 CDS Pput_1896 NC_009512.1 2171691 2172332 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2171691..2172332 Pseudomonas putida F1 5190223 YP_001267229.1 CDS Pput_1897 NC_009512.1 2172388 2173854 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2172388..2173854 Pseudomonas putida F1 5194049 YP_001267230.1 CDS Pput_1898 NC_009512.1 2173993 2175285 D PFAM: outer membrane porin; outer membrane porin 2173993..2175285 Pseudomonas putida F1 5194050 YP_001267232.1 CDS Pput_1900 NC_009512.1 2176490 2177395 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2176490..2177395) Pseudomonas putida F1 5191196 YP_001267233.1 CDS Pput_1901 NC_009512.1 2177425 2178255 D PFAM: protein of unknown function DUF81; hypothetical protein 2177425..2178255 Pseudomonas putida F1 5191932 YP_001267234.1 CDS Pput_1902 NC_009512.1 2178257 2179666 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; diguanylate cyclase complement(2178257..2179666) Pseudomonas putida F1 5191933 YP_001267235.1 CDS Pput_1903 NC_009512.1 2179819 2181648 R PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter complement(2179819..2181648) Pseudomonas putida F1 5191008 YP_001267236.1 CDS Pput_1904 NC_009512.1 2181775 2182167 R PFAM: 17 kDa surface antigen; 17 kDa surface antigen complement(2181775..2182167) Pseudomonas putida F1 5191009 YP_001267237.1 CDS Pput_1905 NC_009512.1 2182241 2182561 R hypothetical protein complement(2182241..2182561) Pseudomonas putida F1 5191636 YP_001267238.1 CDS Pput_1906 NC_009512.1 2182616 2182906 R hypothetical protein complement(2182616..2182906) Pseudomonas putida F1 5191637 YP_001267239.1 CDS Pput_1907 NC_009512.1 2183024 2183374 D hypothetical protein 2183024..2183374 Pseudomonas putida F1 5194988 YP_001267240.1 CDS Pput_1908 NC_009512.1 2183544 2184365 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 2183544..2184365 Pseudomonas putida F1 5194989 YP_001267241.1 CDS Pput_1909 NC_009512.1 2184366 2185133 R PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2184366..2185133) Pseudomonas putida F1 5192070 YP_001267242.1 CDS Pput_1910 NC_009512.1 2185170 2186237 R PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2185170..2186237) Pseudomonas putida F1 5192071 YP_001267243.1 CDS Pput_1911 NC_009512.1 2186421 2186738 R PFAM: Sterol-binding domain protein; sterol-binding domain-containing protein complement(2186421..2186738) Pseudomonas putida F1 5194807 YP_001267244.1 CDS Pput_1912 NC_009512.1 2186795 2187661 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(2186795..2187661) Pseudomonas putida F1 5194808 YP_001267245.1 CDS Pput_1913 NC_009512.1 2187703 2188722 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2187703..2188722 Pseudomonas putida F1 5193729 YP_001267246.1 CDS Pput_1917 NC_009512.1 2193244 2193720 R PFAM: protein of unknown function DUF1003; hypothetical protein complement(2193244..2193720) Pseudomonas putida F1 5192401 YP_001267247.1 CDS Pput_1918 NC_009512.1 2194395 2194790 R hypothetical protein complement(2194395..2194790) Pseudomonas putida F1 5194620 YP_001267248.1 CDS Pput_1919 NC_009512.1 2195197 2195721 R hypothetical protein complement(2195197..2195721) Pseudomonas putida F1 5194621 YP_001267249.1 CDS Pput_1920 NC_009512.1 2195696 2196061 R hypothetical protein complement(2195696..2196061) Pseudomonas putida F1 5191823 YP_001267250.1 CDS Pput_1921 NC_009512.1 2196143 2196685 R hypothetical protein complement(2196143..2196685) Pseudomonas putida F1 5191824 YP_001267251.1 CDS Pput_1922 NC_009512.1 2196682 2197449 R hypothetical protein complement(2196682..2197449) Pseudomonas putida F1 5191400 YP_001267252.1 CDS Pput_1923 NC_009512.1 2197446 2198060 R PFAM: ERF family protein; ERF family protein complement(2197446..2198060) Pseudomonas putida F1 5191401 YP_001267253.1 CDS Pput_1926 NC_009512.1 2199065 2199829 D hypothetical protein 2199065..2199829 Pseudomonas putida F1 5192372 YP_001267254.1 CDS Pput_1927 NC_009512.1 2200357 2200875 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2200357..2200875 Pseudomonas putida F1 5191413 YP_001267255.1 CDS Pput_1928 NC_009512.1 2201600 2201899 D hypothetical protein 2201600..2201899 Pseudomonas putida F1 5191819 YP_001267256.1 CDS Pput_1929 NC_009512.1 2202027 2203124 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; hypothetical protein complement(2202027..2203124) Pseudomonas putida F1 5191820 YP_001267257.1 CDS Pput_1930 NC_009512.1 2203197 2203568 D PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 2203197..2203568 Pseudomonas putida F1 5191398 YP_001267258.1 CDS Pput_1931 NC_009512.1 2204113 2204319 R hypothetical protein complement(2204113..2204319) Pseudomonas putida F1 5191399 YP_001267259.1 CDS Pput_1932 NC_009512.1 2204411 2205421 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase complement(2204411..2205421) Pseudomonas putida F1 5191379 YP_001267260.1 CDS Pput_1933 NC_009512.1 2205857 2206051 D hypothetical protein 2205857..2206051 Pseudomonas putida F1 5191380 YP_001267261.1 CDS Pput_1934 NC_009512.1 2206053 2206520 R PFAM: DoxX family protein; DoxX family protein complement(2206053..2206520) Pseudomonas putida F1 5192980 YP_001267262.1 CDS Pput_1935 NC_009512.1 2207123 2208283 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2207123..2208283 Pseudomonas putida F1 5193460 YP_001267263.1 CDS Pput_1936 NC_009512.1 2208289 2209734 D PFAM: KaiA binding; SMART: AAA ATPase; non-specific serine/threonine protein kinase 2208289..2209734 Pseudomonas putida F1 5195220 YP_001267264.1 CDS Pput_1937 NC_009512.1 2209746 2210099 D PFAM: response regulator receiver; response regulator receiver protein 2209746..2210099 Pseudomonas putida F1 5195221 YP_001267265.1 CDS Pput_1938 NC_009512.1 2210139 2210336 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2210139..2210336) Pseudomonas putida F1 5195270 YP_001267266.1 CDS Pput_1939 NC_009512.1 2210590 2211612 R DNA topoisomerase complement(2210590..2211612) Pseudomonas putida F1 5195271 YP_001267267.1 CDS Pput_1940 NC_009512.1 2211670 2212761 R TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase complement(2211670..2212761) Pseudomonas putida F1 5192838 YP_001267268.1 CDS Pput_1941 NC_009512.1 2212763 2213443 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit complement(2212763..2213443) Pseudomonas putida F1 5192839 YP_001267269.1 CDS Pput_1942 NC_009512.1 2213443 2214201 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; molybdenum ABC transporter periplasmic molybdate-binding protein complement(2213443..2214201) Pseudomonas putida F1 5193490 YP_001267270.1 CDS Pput_1943 NC_009512.1 2214284 2215369 R PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(2214284..2215369) Pseudomonas putida F1 5193491 YP_001267271.1 CDS Pput_1944 NC_009512.1 2215422 2215592 R hypothetical protein complement(2215422..2215592) Pseudomonas putida F1 5194662 YP_001267272.1 CDS Pput_1945 NC_009512.1 2215600 2215902 R PFAM: Domain of unknown function DUF1883; hypothetical protein complement(2215600..2215902) Pseudomonas putida F1 5194663 YP_001267273.1 CDS Pput_1946 NC_009512.1 2216062 2216421 D hypothetical protein 2216062..2216421 Pseudomonas putida F1 5191837 YP_001267274.1 CDS Pput_1947 NC_009512.1 2216499 2217149 D PFAM: cytochrome c, class I; cytochrome c, class I 2216499..2217149 Pseudomonas putida F1 5191838 YP_001267275.1 CDS Pput_1948 NC_009512.1 2217146 2218060 D PFAM: cytochrome c, class I; cytochrome c, class I 2217146..2218060 Pseudomonas putida F1 5191418 YP_001267276.1 CDS Pput_1949 NC_009512.1 2218297 2219136 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2218297..2219136 Pseudomonas putida F1 5191419 YP_001267277.1 CDS Pput_1950 NC_009512.1 2219234 2220589 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 2219234..2220589 Pseudomonas putida F1 5191897 YP_001267278.1 CDS Pput_1951 NC_009512.1 2220724 2222031 R PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2220724..2222031) Pseudomonas putida F1 5191898 YP_001267279.1 CDS Pput_1952 NC_009512.1 2222187 2223335 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(2222187..2223335) Pseudomonas putida F1 5192784 YP_001267280.1 CDS Pput_1953 NC_009512.1 2223353 2224159 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2223353..2224159) Pseudomonas putida F1 5192785 YP_001267281.1 CDS Pput_1954 NC_009512.1 2224166 2225083 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2224166..2225083) Pseudomonas putida F1 5192927 YP_001267282.1 CDS Pput_1955 NC_009512.1 2225080 2226105 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(2225080..2226105) Pseudomonas putida F1 5192928 YP_001267283.1 CDS Pput_1956 NC_009512.1 2226436 2227557 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein complement(2226436..2227557) Pseudomonas putida F1 5193000 YP_001267284.1 CDS Pput_1957 NC_009512.1 2227636 2227929 D PFAM: protein of unknown function DUF1330; hypothetical protein 2227636..2227929 Pseudomonas putida F1 5193001 YP_001267285.1 CDS Pput_1958 NC_009512.1 2228134 2229153 R PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(2228134..2229153) Pseudomonas putida F1 5193326 YP_001267286.1 CDS Pput_1959 NC_009512.1 2229243 2230184 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2229243..2230184 Pseudomonas putida F1 5193327 YP_001267287.1 CDS Pput_1960 NC_009512.1 2230211 2230612 D hypothetical protein 2230211..2230612 Pseudomonas putida F1 5191620 YP_001267288.1 CDS Pput_1961 NC_009512.1 2230747 2230968 D PFAM: MbtH domain protein; MbtH domain-containing protein 2230747..2230968 Pseudomonas putida F1 5191621 YP_001267289.1 CDS Pput_1962 NC_009512.1 2230965 2231684 D PFAM: Thioesterase; thioesterase 2230965..2231684 Pseudomonas putida F1 5191833 YP_001267290.1 CDS Pput_1963 NC_009512.1 2231742 2232293 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2231742..2232293 Pseudomonas putida F1 5191834 YP_001267291.1 CDS Pput_1964 NC_009512.1 2232320 2233372 D PFAM: protein of unknown function DUF1615; hypothetical protein 2232320..2233372 Pseudomonas putida F1 5191950 YP_001267292.1 CDS Pput_1965 NC_009512.1 2233597 2234460 R hypothetical protein complement(2233597..2234460) Pseudomonas putida F1 5191951 YP_001267293.1 CDS Pput_1966 NC_009512.1 2234457 2235356 R PFAM: ABC-3 protein; ABC-3 protein complement(2234457..2235356) Pseudomonas putida F1 5193075 YP_001267294.1 CDS Pput_1967 NC_009512.1 2235356 2236102 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2235356..2236102) Pseudomonas putida F1 5193076 YP_001267295.1 CDS Pput_1968 NC_009512.1 2236099 2237001 R PFAM: periplasmic solute binding protein; periplasmic solute binding protein complement(2236099..2237001) Pseudomonas putida F1 5194071 YP_001267296.1 CDS Pput_1969 NC_009512.1 2237018 2237587 R hypothetical protein complement(2237018..2237587) Pseudomonas putida F1 5194072 YP_001267297.1 CDS Pput_1970 NC_009512.1 2237584 2237904 R hypothetical protein complement(2237584..2237904) Pseudomonas putida F1 5193336 YP_001267298.1 CDS Pput_1971 NC_009512.1 2237901 2238440 R hypothetical protein complement(2237901..2238440) Pseudomonas putida F1 5193337 YP_001267299.1 CDS Pput_1972 NC_009512.1 2238437 2239630 R PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase complement(2238437..2239630) Pseudomonas putida F1 5191462 YP_001267300.1 CDS Pput_1973 NC_009512.1 2239808 2241142 R lysine/ornithine N-monooxygenase-like protein complement(2239808..2241142) Pseudomonas putida F1 5191463 YP_001267301.1 CDS Pput_1974 NC_009512.1 2241317 2241763 D hypothetical protein 2241317..2241763 Pseudomonas putida F1 5191807 YP_001267302.1 CDS pbpG NC_009512.1 2242180 2243106 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2242180..2243106) Pseudomonas putida F1 5190202 YP_001267303.1 CDS Pput_1978 NC_009512.1 2243393 2244109 D PFAM: phage integrase family protein; phage integrase family protein 2243393..2244109 Pseudomonas putida F1 5190203 YP_001267304.1 CDS Pput_1979 NC_009512.1 2244200 2245156 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2244200..2245156) Pseudomonas putida F1 5195572 YP_001267305.1 CDS Pput_1980 NC_009512.1 2245198 2245629 D PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 2245198..2245629 Pseudomonas putida F1 5192972 YP_001267306.1 CDS Pput_1981 NC_009512.1 2246162 2247145 D PFAM: luciferase family protein; luciferase family protein 2246162..2247145 Pseudomonas putida F1 5192973 YP_001267307.1 CDS Pput_1983 NC_009512.1 2247561 2247863 R hypothetical protein complement(2247561..2247863) Pseudomonas putida F1 5193743 YP_001267308.1 CDS Pput_1984 NC_009512.1 2248092 2249192 R PFAM: low temperature requirement A; low temperature requirement A complement(2248092..2249192) Pseudomonas putida F1 5191852 YP_001267309.1 CDS Pput_1985 NC_009512.1 2249291 2249830 R PFAM: DSBA oxidoreductase; DSBA oxidoreductase complement(2249291..2249830) Pseudomonas putida F1 5193372 YP_001267310.1 CDS Pput_1986 NC_009512.1 2249842 2250384 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase complement(2249842..2250384) Pseudomonas putida F1 5193373 YP_001267311.1 CDS Pput_1987 NC_009512.1 2251294 2252460 R PFAM: aminotransferase, class I and II; GntR family transcriptional regulator complement(2251294..2252460) Pseudomonas putida F1 5194161 YP_001267312.1 CDS Pput_1988 NC_009512.1 2252541 2252984 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2252541..2252984 Pseudomonas putida F1 5194162 YP_001267313.1 CDS Pput_1989 NC_009512.1 2253845 2254519 R PFAM: Alginate lyase 2; alginate lyase 2 complement(2253845..2254519) Pseudomonas putida F1 5193082 YP_001267314.1 CDS Pput_1990 NC_009512.1 2254754 2255077 D PFAM: protein of unknown function DUF1654; hypothetical protein 2254754..2255077 Pseudomonas putida F1 5193083 YP_001267315.1 CDS Pput_1991 NC_009512.1 2255116 2255985 R PFAM: peptidase S24, S26A and S26B; putative phage repressor complement(2255116..2255985) Pseudomonas putida F1 5193094 YP_001267316.1 CDS Pput_1992 NC_009512.1 2256105 2256419 D hypothetical protein 2256105..2256419 Pseudomonas putida F1 5193095 YP_001267317.1 CDS Pput_1993 NC_009512.1 2256509 2256691 R hypothetical protein complement(2256509..2256691) Pseudomonas putida F1 5194285 YP_001267318.1 CDS Pput_1994 NC_009512.1 2256786 2257139 R hypothetical protein complement(2256786..2257139) Pseudomonas putida F1 5194286 YP_001267319.1 CDS Pput_1995 NC_009512.1 2257301 2258122 D catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2257301..2258122 Pseudomonas putida F1 5194269 YP_001267320.1 CDS Pput_1996 NC_009512.1 2258179 2258421 R hypothetical protein complement(2258179..2258421) Pseudomonas putida F1 5194270 YP_001267321.1 CDS Pput_1997 NC_009512.1 2258519 2259046 R TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2258519..2259046) Pseudomonas putida F1 5194789 YP_001267322.1 CDS Pput_1998 NC_009512.1 2259271 2259675 R hypothetical protein complement(2259271..2259675) Pseudomonas putida F1 5194790 YP_001267323.1 CDS Pput_1999 NC_009512.1 2259992 2261281 D PFAM: outer membrane porin; outer membrane porin 2259992..2261281 Pseudomonas putida F1 5195183 YP_001267324.1 CDS Pput_2000 NC_009512.1 2261349 2262098 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2261349..2262098 Pseudomonas putida F1 5195184 YP_001267325.1 CDS Pput_2001 NC_009512.1 2262168 2262518 R PFAM: response regulator receiver; response regulator receiver protein complement(2262168..2262518) Pseudomonas putida F1 5195292 YP_001267326.1 CDS Pput_2002 NC_009512.1 2262767 2266234 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; multi-sensor hybrid histidine kinase 2262767..2266234 Pseudomonas putida F1 5195293 YP_001267327.1 CDS Pput_2003 NC_009512.1 2266231 2267052 D PFAM: MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase 2266231..2267052 Pseudomonas putida F1 5192625 YP_001267328.1 CDS Pput_2004 NC_009512.1 2267049 2267624 D PFAM: CheB methylesterase; CheB methylesterase 2267049..2267624 Pseudomonas putida F1 5192626 YP_001267329.1 CDS Pput_2005 NC_009512.1 2267618 2268844 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; response regulator receiver sensor signal transduction histidine kinase 2267618..2268844 Pseudomonas putida F1 5193629 YP_001267330.1 CDS Pput_2006 NC_009512.1 2268889 2269266 D PFAM: response regulator receiver; response regulator receiver protein 2268889..2269266 Pseudomonas putida F1 5193630 YP_001267331.1 CDS Pput_2007 NC_009512.1 2269315 2269896 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(2269315..2269896) Pseudomonas putida F1 5193885 YP_001267332.1 CDS Pput_2008 NC_009512.1 2269909 2270757 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA dehydrogenase complement(2269909..2270757) Pseudomonas putida F1 5193886 YP_001267333.1 CDS Pput_2009 NC_009512.1 2270771 2271955 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(2270771..2271955) Pseudomonas putida F1 5193874 YP_001267334.1 CDS Pput_2010 NC_009512.1 2272124 2273212 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2272124..2273212 Pseudomonas putida F1 5193875 YP_001267335.1 CDS Pput_2011 NC_009512.1 2273491 2273928 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase complement(2273491..2273928) Pseudomonas putida F1 5190900 YP_001267336.1 CDS Pput_2012 NC_009512.1 2274129 2275325 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2274129..2275325 Pseudomonas putida F1 5190901 YP_001267337.1 CDS Pput_2013 NC_009512.1 2275318 2276814 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(2275318..2276814) Pseudomonas putida F1 5193992 YP_001267338.1 CDS Pput_2014 NC_009512.1 2276842 2277180 R hypothetical protein complement(2276842..2277180) Pseudomonas putida F1 5193993 YP_001267339.1 CDS Pput_2015 NC_009512.1 2277320 2277718 R PFAM: protein of unknown function DUF336; hypothetical protein complement(2277320..2277718) Pseudomonas putida F1 5193165 YP_001267340.1 CDS glcF NC_009512.1 2277711 2278946 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit complement(2277711..2278946) Pseudomonas putida F1 5193166 YP_001267341.1 CDS glcE NC_009512.1 2278956 2280008 R PFAM: FAD linked oxidase domain protein; glycolate oxidase FAD binding subunit complement(2278956..2280008) Pseudomonas putida F1 5191789 YP_001267342.1 CDS Pput_2018 NC_009512.1 2280008 2281507 R TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; glycolate oxidase subunit GlcD complement(2280008..2281507) Pseudomonas putida F1 5191790 YP_001267343.1 CDS Pput_2019 NC_009512.1 2281702 2282466 D PFAM: regulatory protein GntR, HTH; GntR domain protein; DNA-binding transcriptional regulator GlcC 2281702..2282466 Pseudomonas putida F1 5194477 YP_001267344.1 CDS Pput_2020 NC_009512.1 2282527 2282844 R TIGRFAM: conserverd hypothetical protein; hypothetical protein complement(2282527..2282844) Pseudomonas putida F1 5194478 YP_001267345.1 CDS Pput_2021 NC_009512.1 2283125 2283751 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2283125..2283751 Pseudomonas putida F1 5190970 YP_001267346.1 CDS Pput_2022 NC_009512.1 2283794 2285797 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase complement(2283794..2285797) Pseudomonas putida F1 5190971 YP_001267347.1 CDS Pput_2023 NC_009512.1 2286252 2287592 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2286252..2287592 Pseudomonas putida F1 5190450 YP_001267348.1 CDS Pput_2024 NC_009512.1 2287695 2288948 D PFAM: outer membrane porin; outer membrane porin 2287695..2288948 Pseudomonas putida F1 5190451 YP_001267349.1 CDS Pput_2025 NC_009512.1 2289342 2290076 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2289342..2290076 Pseudomonas putida F1 5195174 YP_001267350.1 CDS Pput_2026 NC_009512.1 2290083 2291033 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin complement(2290083..2291033) Pseudomonas putida F1 5195175 YP_001267351.1 CDS Pput_2027 NC_009512.1 2291046 2292113 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(2291046..2292113) Pseudomonas putida F1 5193815 YP_001267352.1 CDS Pput_2028 NC_009512.1 2292395 2293060 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2292395..2293060 Pseudomonas putida F1 5193816 YP_001267353.1 CDS Pput_2029 NC_009512.1 2293060 2295519 D PFAM: protein of unknown function DUF214; hypothetical protein 2293060..2295519 Pseudomonas putida F1 5190659 YP_001267354.1 CDS Pput_2030 NC_009512.1 2295509 2296564 D secreted hydrolase-like protein 2295509..2296564 Pseudomonas putida F1 5190660 YP_001267355.1 CDS Pput_2031 NC_009512.1 2296618 2297364 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2296618..2297364) Pseudomonas putida F1 5193958 YP_001267356.1 CDS Pput_2032 NC_009512.1 2297481 2298125 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2297481..2298125 Pseudomonas putida F1 5193959 YP_001267357.1 CDS Pput_2033 NC_009512.1 2298199 2298915 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2298199..2298915 Pseudomonas putida F1 5192877 YP_001267358.1 CDS Pput_2034 NC_009512.1 2298912 2299694 D SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2298912..2299694 Pseudomonas putida F1 5192878 YP_001267359.1 CDS Pput_2035 NC_009512.1 2299691 2301943 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 2299691..2301943 Pseudomonas putida F1 5190363 YP_001267360.1 CDS Pput_2036 NC_009512.1 2302140 2303546 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 2302140..2303546 Pseudomonas putida F1 5190364 YP_001267361.1 CDS Pput_2037 NC_009512.1 2303785 2304579 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2303785..2304579 Pseudomonas putida F1 5195050 YP_001267362.1 CDS Pput_2038 NC_009512.1 2304613 2305773 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2304613..2305773 Pseudomonas putida F1 5195051 YP_001267363.1 CDS Pput_2039 NC_009512.1 2305791 2307908 D PFAM: CoA-binding domain protein; CoA-binding domain-containing protein 2305791..2307908 Pseudomonas putida F1 5193187 YP_001267364.1 CDS Pput_2040 NC_009512.1 2307901 2309508 D PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; hypothetical protein 2307901..2309508 Pseudomonas putida F1 5193188 YP_001267365.1 CDS alr NC_009512.1 2309543 2310772 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2309543..2310772 Pseudomonas putida F1 5191531 YP_001267366.1 CDS Pput_2042 NC_009512.1 2310797 2311987 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; class I and II aminotransferase 2310797..2311987 Pseudomonas putida F1 5191532 YP_001267367.1 CDS Pput_2043 NC_009512.1 2311980 2313392 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2311980..2313392 Pseudomonas putida F1 5191795 YP_001267368.1 CDS Pput_2044 NC_009512.1 2313430 2314137 D PFAM: NAD(P)H dehydrogenase (quinone); ribosyldihydronicotinamide dehydrogenase 2313430..2314137 Pseudomonas putida F1 5191796 YP_001267369.1 CDS Pput_2045 NC_009512.1 2314674 2315777 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2314674..2315777 Pseudomonas putida F1 5195023 YP_001267370.1 CDS Pput_2046 NC_009512.1 2315812 2317224 D PFAM: aminotransferase class-III; hypothetical protein 2315812..2317224 Pseudomonas putida F1 5195024 YP_001267371.1 CDS Pput_2047 NC_009512.1 2317221 2318126 D PFAM: regulatory protein, LuxR; LuxR family transcriptional regulator 2317221..2318126 Pseudomonas putida F1 5193436 YP_001267372.1 CDS Pput_2048 NC_009512.1 2318280 2319512 D PFAM: Ethanolamine utilisation protein, EutH; ethanolamine utilisation protein, EutH 2318280..2319512 Pseudomonas putida F1 5193437 YP_001267373.1 CDS Pput_2049 NC_009512.1 2319628 2320425 D PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; response regulator receiver protein 2319628..2320425 Pseudomonas putida F1 5190607 YP_001267374.1 CDS Pput_2050 NC_009512.1 2320472 2321791 R TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; FAD-linked oxidoreductase complement(2320472..2321791) Pseudomonas putida F1 5190608 YP_001267375.1 CDS Pput_2051 NC_009512.1 2321772 2322539 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(2321772..2322539) Pseudomonas putida F1 5195044 YP_001267376.1 CDS Pput_2052 NC_009512.1 2322785 2323687 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2322785..2323687) Pseudomonas putida F1 5195045 YP_001267377.1 CDS Pput_2053 NC_009512.1 2323793 2324914 D TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerase 2323793..2324914 Pseudomonas putida F1 5192766 YP_001267378.1 CDS Pput_2054 NC_009512.1 2324932 2325222 D PFAM: Muconolactone delta-isomerase; muconolactone Delta-isomerase 2324932..2325222 Pseudomonas putida F1 5192767 YP_001267379.1 CDS Pput_2055 NC_009512.1 2325266 2326201 D TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; catechol 1,2-dioxygenase 2325266..2326201 Pseudomonas putida F1 5191661 YP_001267380.1 CDS Pput_2056 NC_009512.1 2326319 2326813 D hypothetical protein 2326319..2326813 Pseudomonas putida F1 5191662 YP_001267381.1 CDS Pput_2057 NC_009512.1 2326974 2329073 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 2326974..2329073 Pseudomonas putida F1 5190448 YP_001267382.1 CDS Pput_2058 NC_009512.1 2329088 2329912 R PFAM: aldo/keto reductase; aldo/keto reductase complement(2329088..2329912) Pseudomonas putida F1 5190449 YP_001267383.1 CDS Pput_2059 NC_009512.1 2330100 2331035 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2330100..2331035 Pseudomonas putida F1 5195076 YP_001267384.1 CDS Pput_2060 NC_009512.1 2331095 2332000 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2331095..2332000) Pseudomonas putida F1 5195077 YP_001267385.1 CDS Pput_2061 NC_009512.1 2332387 2334642 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2332387..2334642 Pseudomonas putida F1 5195062 YP_001267386.1 CDS Pput_2062 NC_009512.1 2334802 2336013 D PFAM: creatinase; peptidase M24; creatinase 2334802..2336013 Pseudomonas putida F1 5195063 YP_001267387.1 CDS Pput_2063 NC_009512.1 2336176 2337510 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2336176..2337510 Pseudomonas putida F1 5192424 YP_001267388.1 CDS Pput_2064 NC_009512.1 2337635 2338642 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator complement(2337635..2338642) Pseudomonas putida F1 5192425 YP_001267389.1 CDS pssA NC_009512.1 2338839 2340152 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2338839..2340152 Pseudomonas putida F1 5190189 YP_001267390.1 CDS Pput_2066 NC_009512.1 2340272 2341531 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2340272..2341531 Pseudomonas putida F1 5190190 YP_001267391.1 CDS Pput_2067 NC_009512.1 2341652 2343025 R PFAM: conserved hypothetical protein 730; hypothetical protein complement(2341652..2343025) Pseudomonas putida F1 5193978 YP_001267392.1 CDS Pput_2068 NC_009512.1 2343239 2344300 R PFAM: conserved hypothetical protein 698; hypothetical protein complement(2343239..2344300) Pseudomonas putida F1 5193979 YP_001267393.1 CDS Pput_2069 NC_009512.1 2344413 2345300 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2344413..2345300 Pseudomonas putida F1 5190756 YP_001267394.1 CDS Pput_2070 NC_009512.1 2345518 2345973 R PFAM: MaoC domain protein dehydratase; dehydratase complement(2345518..2345973) Pseudomonas putida F1 5190757 YP_001267395.1 CDS Pput_2071 NC_009512.1 2346205 2347230 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2346205..2347230 Pseudomonas putida F1 5195532 YP_001267396.1 CDS Pput_2072 NC_009512.1 2347501 2348853 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 2347501..2348853 Pseudomonas putida F1 5195533 YP_001267397.1 CDS Pput_2073 NC_009512.1 2348882 2349610 D PFAM: nitroreductase; nitroreductase 2348882..2349610 Pseudomonas putida F1 5194738 YP_001267398.1 CDS Pput_2074 NC_009512.1 2349772 2351034 D PFAM: outer membrane porin; outer membrane porin 2349772..2351034 Pseudomonas putida F1 5194739 YP_001267399.1 CDS Pput_2075 NC_009512.1 2351185 2352597 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(2351185..2352597) Pseudomonas putida F1 5194243 YP_001267400.1 CDS Pput_2076 NC_009512.1 2352976 2353428 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(2352976..2353428) Pseudomonas putida F1 5194244 YP_001267401.1 CDS Pput_2077 NC_009512.1 2353540 2354154 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2353540..2354154 Pseudomonas putida F1 5192347 YP_001267402.1 CDS Pput_2078 NC_009512.1 2354212 2354853 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2354212..2354853 Pseudomonas putida F1 5192348 YP_001267403.1 CDS Pput_2079 NC_009512.1 2354876 2357059 R PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; GAF sensor hybrid histidine kinase complement(2354876..2357059) Pseudomonas putida F1 5193226 YP_001267404.1 CDS Pput_2080 NC_009512.1 2357211 2357774 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(2357211..2357774) Pseudomonas putida F1 5193227 YP_001267405.1 CDS Pput_2081 NC_009512.1 2357777 2358529 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(2357777..2358529) Pseudomonas putida F1 5194998 YP_001267406.1 CDS Pput_2082 NC_009512.1 2358618 2359007 R PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(2358618..2359007) Pseudomonas putida F1 5194999 YP_001267407.1 CDS Pput_2083 NC_009512.1 2359194 2359679 R PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(2359194..2359679) Pseudomonas putida F1 5190479 YP_001267408.1 CDS Pput_2084 NC_009512.1 2359692 2361173 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(2359692..2361173) Pseudomonas putida F1 5190480 YP_001267409.1 CDS Pput_2085 NC_009512.1 2361170 2362003 R PFAM: alpha/beta hydrolase fold; Ndr family protein; alpha/beta hydrolase fold family protein complement(2361170..2362003) Pseudomonas putida F1 5194249 YP_001267410.1 CDS Pput_2086 NC_009512.1 2362072 2362668 R PFAM: protein of unknown function DUF1185; hypothetical protein complement(2362072..2362668) Pseudomonas putida F1 5194250 YP_001267411.1 CDS Pput_2087 NC_009512.1 2362933 2363973 R PFAM: luciferase family protein; luciferase family protein complement(2362933..2363973) Pseudomonas putida F1 5192728 YP_001267412.1 CDS Pput_2088 NC_009512.1 2364054 2364539 R PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(2364054..2364539) Pseudomonas putida F1 5192729 YP_001267413.1 CDS Pput_2090 NC_009512.1 2364856 2366262 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2364856..2366262 Pseudomonas putida F1 5193744 YP_001267414.1 CDS Pput_2091 NC_009512.1 2366315 2367940 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2366315..2367940) Pseudomonas putida F1 5191050 YP_001267415.1 CDS Pput_2092 NC_009512.1 2368171 2369379 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2368171..2369379) Pseudomonas putida F1 5192484 YP_001267416.1 CDS Pput_2093 NC_009512.1 2369321 2370232 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2369321..2370232) Pseudomonas putida F1 5192485 YP_001267417.1 CDS Pput_2094 NC_009512.1 2370335 2370895 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 2370335..2370895 Pseudomonas putida F1 5193387 YP_001267418.1 CDS Pput_2095 NC_009512.1 2370994 2372058 D Acyl-CoA dehydrogenase-like protein 2370994..2372058 Pseudomonas putida F1 5193388 YP_001267419.1 CDS Pput_2096 NC_009512.1 2372055 2372876 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2372055..2372876 Pseudomonas putida F1 5193197 YP_001267420.1 CDS Pput_2097 NC_009512.1 2372863 2374068 D nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 2372863..2374068 Pseudomonas putida F1 5193198 YP_001267421.1 CDS Pput_2098 NC_009512.1 2374068 2374823 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2374068..2374823 Pseudomonas putida F1 5195120 YP_001267422.1 CDS Pput_2099 NC_009512.1 2374935 2375621 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2374935..2375621) Pseudomonas putida F1 5195121 YP_001267423.1 CDS Pput_2100 NC_009512.1 2375697 2376638 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(2375697..2376638) Pseudomonas putida F1 5191316 YP_001267424.1 CDS Pput_2101 NC_009512.1 2376795 2377673 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2376795..2377673 Pseudomonas putida F1 5191317 YP_001267425.1 CDS Pput_2102 NC_009512.1 2377740 2378390 R PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; SH3 type 3 domain-containing protein complement(2377740..2378390) Pseudomonas putida F1 5193134 YP_001267426.1 CDS Pput_2103 NC_009512.1 2378662 2380005 D PFAM: outer membrane porin; outer membrane porin 2378662..2380005 Pseudomonas putida F1 5193135 YP_001267427.1 CDS Pput_2104 NC_009512.1 2380191 2380670 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2380191..2380670 Pseudomonas putida F1 5192950 YP_001267428.1 CDS Pput_2105 NC_009512.1 2380751 2382496 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter complement(2380751..2382496) Pseudomonas putida F1 5192951 YP_001267429.1 CDS Pput_2106 NC_009512.1 2382812 2383129 D hypothetical protein 2382812..2383129 Pseudomonas putida F1 5190193 YP_001267430.1 CDS Pput_2107 NC_009512.1 2383138 2383338 D PFAM: protein of unknown function DUF1289; hypothetical protein 2383138..2383338 Pseudomonas putida F1 5190194 YP_001267431.1 CDS Pput_2108 NC_009512.1 2383388 2384029 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2383388..2384029 Pseudomonas putida F1 5195143 YP_001267432.1 CDS Pput_2109 NC_009512.1 2384238 2385026 D SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2384238..2385026 Pseudomonas putida F1 5195144 YP_001267433.1 CDS Pput_2110 NC_009512.1 2385096 2386439 R PFAM: cytochrome c, class I; gluconate 2-dehydrogenase complement(2385096..2386439) Pseudomonas putida F1 5190544 YP_001267434.1 CDS Pput_2111 NC_009512.1 2386458 2388713 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(2386458..2388713) Pseudomonas putida F1 5190545 YP_001267435.1 CDS Pput_2112 NC_009512.1 2388713 2389168 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2388713..2389168) Pseudomonas putida F1 5192041 YP_001267436.1 CDS Pput_2113 NC_009512.1 2389439 2391625 D PFAM: OsmC family protein; protein of unknown function DUF181; hypothetical protein 2389439..2391625 Pseudomonas putida F1 5192042 YP_001267437.1 CDS Pput_2114 NC_009512.1 2391817 2392695 R hypothetical protein complement(2391817..2392695) Pseudomonas putida F1 5192461 YP_001267438.1 CDS Pput_2115 NC_009512.1 2392698 2395688 R hypothetical protein complement(2392698..2395688) Pseudomonas putida F1 5192462 YP_001267439.1 CDS Pput_2116 NC_009512.1 2395681 2396604 R hypothetical protein complement(2395681..2396604) Pseudomonas putida F1 5192609 YP_001267440.1 CDS Pput_2117 NC_009512.1 2396601 2398769 R PFAM: Rhs element Vgr protein; Rhs element Vgr protein complement(2396601..2398769) Pseudomonas putida F1 5192610 YP_001267441.1 CDS Pput_2118 NC_009512.1 2398843 2399358 R PFAM: protein of unknown function DUF796; hypothetical protein complement(2398843..2399358) Pseudomonas putida F1 5193647 YP_001267442.1 CDS Pput_2119 NC_009512.1 2399491 2400360 R hypothetical protein complement(2399491..2400360) Pseudomonas putida F1 5193648 YP_001267443.1 CDS Pput_2120 NC_009512.1 2400362 2401699 R PFAM: protein of unknown function DUF876; hypothetical protein complement(2400362..2401699) Pseudomonas putida F1 5192084 YP_001267444.1 CDS Pput_2121 NC_009512.1 2401755 2402552 R hypothetical protein complement(2401755..2402552) Pseudomonas putida F1 5192085 YP_001267445.1 CDS Pput_2122 NC_009512.1 2402549 2403118 R PFAM: Forkhead-associated protein; FHA domain-containing protein complement(2402549..2403118) Pseudomonas putida F1 5190736 YP_001267446.1 CDS Pput_2123 NC_009512.1 2403115 2404131 R PFAM: protein of unknown function DUF1305; hypothetical protein complement(2403115..2404131) Pseudomonas putida F1 5190737 YP_001267447.1 CDS Pput_2124 NC_009512.1 2404095 2405861 R PFAM: protein of unknown function DUF879; hypothetical protein complement(2404095..2405861) Pseudomonas putida F1 5195011 YP_001267448.1 CDS Pput_2125 NC_009512.1 2405865 2406275 R PFAM: GPW/gp25 family protein; GPW/gp25 family protein complement(2405865..2406275) Pseudomonas putida F1 5195012 YP_001267449.1 CDS Pput_2126 NC_009512.1 2406272 2407762 R PFAM: protein of unknown function DUF877; hypothetical protein complement(2406272..2407762) Pseudomonas putida F1 5194063 YP_001267450.1 CDS Pput_2127 NC_009512.1 2407780 2408283 R PFAM: uncharacterised conserved protein UCP028301; hypothetical protein complement(2407780..2408283) Pseudomonas putida F1 5194064 YP_001267451.1 CDS Pput_2128 NC_009512.1 2408611 2409261 D hypothetical protein 2408611..2409261 Pseudomonas putida F1 5190401 YP_001267452.1 CDS Pput_2129 NC_009512.1 2409249 2410712 D PFAM: ImpA domain protein; ImpA domain-containing protein 2409249..2410712 Pseudomonas putida F1 5190402 YP_001267453.1 CDS Pput_2130 NC_009512.1 2410709 2414329 D PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 2410709..2414329 Pseudomonas putida F1 5192570 YP_001267454.1 CDS Pput_2131 NC_009512.1 2414407 2416260 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2414407..2416260) Pseudomonas putida F1 5192571 YP_001267455.1 CDS Pput_2132 NC_009512.1 2416563 2418053 D hypothetical protein 2416563..2418053 Pseudomonas putida F1 5192020 YP_001267456.1 CDS Pput_2133 NC_009512.1 2418228 2419841 D hypothetical protein 2418228..2419841 Pseudomonas putida F1 5192021 YP_001267457.1 CDS Pput_2134 NC_009512.1 2419838 2420056 D hypothetical protein 2419838..2420056 Pseudomonas putida F1 5194696 YP_001267458.1 CDS Pput_2135 NC_009512.1 2420053 2420760 D cellulose synthase 2420053..2420760 Pseudomonas putida F1 5194697 YP_001267459.1 CDS bcsA NC_009512.1 2420757 2423366 D polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 2420757..2423366 Pseudomonas putida F1 5193017 YP_001267460.1 CDS Pput_2137 NC_009512.1 2423402 2425651 D binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 2423402..2425651 Pseudomonas putida F1 5193018 YP_001267461.1 CDS Pput_2138 NC_009512.1 2425663 2426766 D catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 2425663..2426766 Pseudomonas putida F1 5192939 YP_001267462.1 CDS Pput_2139 NC_009512.1 2426754 2430272 D cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 2426754..2430272 Pseudomonas putida F1 5192940 YP_001267463.1 CDS Pput_2140 NC_009512.1 2430610 2431476 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2430610..2431476 Pseudomonas putida F1 5190361 YP_001267464.1 CDS amiE NC_009512.1 2431662 2432705 D aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 2431662..2432705 Pseudomonas putida F1 5190362 YP_001267465.1 CDS Pput_2142 NC_009512.1 2432761 2433882 D PFAM: ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2432761..2433882 Pseudomonas putida F1 5190690 YP_001267466.1 CDS Pput_2143 NC_009512.1 2433904 2435061 D branched chain amino acid ABC transporter substrate-binding protein 2433904..2435061 Pseudomonas putida F1 5190691 YP_001267467.1 CDS Pput_2144 NC_009512.1 2435058 2435642 D PFAM: ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2435058..2435642 Pseudomonas putida F1 5190454 YP_001267468.1 CDS Pput_2145 NC_009512.1 2435655 2436167 D PFAM: AmiS/UreI transporter; AmiS/UreI transporter 2435655..2436167 Pseudomonas putida F1 5190455 YP_001267469.1 CDS Pput_2146 NC_009512.1 2436214 2436660 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2436214..2436660) Pseudomonas putida F1 5192675 YP_001267470.1 CDS Pput_2147 NC_009512.1 2436733 2438421 R PFAM: peptidase M24; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(2436733..2438421) Pseudomonas putida F1 5192676 YP_001267471.1 CDS Pput_2148 NC_009512.1 2438500 2439996 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2438500..2439996 Pseudomonas putida F1 5191022 YP_001267472.1 CDS Pput_2149 NC_009512.1 2440267 2441892 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2440267..2441892 Pseudomonas putida F1 5191023 YP_001267473.1 CDS Pput_2150 NC_009512.1 2442634 2445348 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase 2442634..2445348 Pseudomonas putida F1 5192143 YP_001267474.1 CDS Pput_2151 NC_009512.1 2445370 2445747 D hypothetical protein 2445370..2445747 Pseudomonas putida F1 5192144 YP_001267475.1 CDS Pput_2152 NC_009512.1 2445848 2447074 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2445848..2447074) Pseudomonas putida F1 5192314 YP_001267476.1 CDS Pput_2153 NC_009512.1 2447367 2447921 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2447367..2447921) Pseudomonas putida F1 5192315 YP_001267477.1 CDS Pput_2154 NC_009512.1 2448030 2448926 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2448030..2448926 Pseudomonas putida F1 5195163 YP_001267478.1 CDS Pput_2155 NC_009512.1 2448986 2449861 R PFAM: UspA domain protein; UspA domain-containing protein complement(2448986..2449861) Pseudomonas putida F1 5195164 YP_001267479.1 CDS Pput_2156 NC_009512.1 2450152 2451093 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2450152..2451093) Pseudomonas putida F1 5191632 YP_001267480.1 CDS Pput_2157 NC_009512.1 2451236 2452378 D PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2451236..2452378 Pseudomonas putida F1 5191633 YP_001267481.1 CDS Pput_2158 NC_009512.1 2452423 2453766 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2452423..2453766 Pseudomonas putida F1 5193193 YP_001267482.1 CDS Pput_2159 NC_009512.1 2453904 2454689 D PFAM: Hydratase/decarboxylase; hydratase/decarboxylase 2453904..2454689 Pseudomonas putida F1 5193194 YP_001267483.1 CDS Pput_2160 NC_009512.1 2454679 2455497 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(2454679..2455497) Pseudomonas putida F1 5191212 YP_001267484.1 CDS Pput_2161 NC_009512.1 2455604 2455918 D hypothetical protein 2455604..2455918 Pseudomonas putida F1 5191213 YP_001267485.1 CDS Pput_2162 NC_009512.1 2455915 2456340 D PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); membrane-associated protein in eicosanoid and glutathione metabolism 2455915..2456340 Pseudomonas putida F1 5191860 YP_001267486.1 CDS Pput_2163 NC_009512.1 2456418 2456645 D hypothetical protein 2456418..2456645 Pseudomonas putida F1 5191861 YP_001267487.1 CDS Pput_2164 NC_009512.1 2456962 2457993 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate ABC transporter substrate-binding protein 2456962..2457993 Pseudomonas putida F1 5193132 YP_001267488.1 CDS Pput_2165 NC_009512.1 2458064 2459032 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2458064..2459032 Pseudomonas putida F1 5193133 YP_001267489.1 CDS Pput_2166 NC_009512.1 2459029 2459922 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2459029..2459922 Pseudomonas putida F1 5191498 YP_001267490.1 CDS Pput_2167 NC_009512.1 2459973 2460758 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2459973..2460758 Pseudomonas putida F1 5191499 YP_001267491.1 CDS Pput_2168 NC_009512.1 2460853 2461551 D hypothetical protein 2460853..2461551 Pseudomonas putida F1 5191460 YP_001267492.1 CDS Pput_2169 NC_009512.1 2461551 2462150 D hypothetical protein 2461551..2462150 Pseudomonas putida F1 5191461 YP_001267493.1 CDS Pput_2170 NC_009512.1 2462543 2463730 D hypothetical protein 2462543..2463730 Pseudomonas putida F1 5190215 YP_001267494.1 CDS Pput_2171 NC_009512.1 2463871 2465034 D PFAM: domain of unknown function DUF1745; hypothetical protein 2463871..2465034 Pseudomonas putida F1 5190216 YP_001267495.1 CDS Pput_2172 NC_009512.1 2464964 2466901 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 2464964..2466901 Pseudomonas putida F1 5193420 YP_001267496.1 CDS Pput_2173 NC_009512.1 2466947 2467612 R PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator complement(2466947..2467612) Pseudomonas putida F1 5193421 YP_001267497.1 CDS Pput_2174 NC_009512.1 2467667 2468227 R SMART: Rhodanese domain protein; rhodanese domain-containing protein complement(2467667..2468227) Pseudomonas putida F1 5195282 YP_001267498.1 CDS Pput_2175 NC_009512.1 2468496 2469278 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2468496..2469278) Pseudomonas putida F1 5195283 YP_001267499.1 CDS Pput_2176 NC_009512.1 2469301 2470545 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2469301..2470545) Pseudomonas putida F1 5191537 YP_001267500.1 CDS Pput_2177 NC_009512.1 2470562 2471272 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(2470562..2471272) Pseudomonas putida F1 5191538 YP_001267501.1 CDS Pput_2178 NC_009512.1 2471269 2471988 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(2471269..2471988) Pseudomonas putida F1 5190657 YP_001267502.1 CDS Pput_2179 NC_009512.1 2472140 2472892 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2472140..2472892) Pseudomonas putida F1 5190658 YP_001267503.1 CDS Pput_2180 NC_009512.1 2472915 2473787 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator complement(2472915..2473787) Pseudomonas putida F1 5190369 YP_001267504.1 CDS Pput_2181 NC_009512.1 2473930 2474955 D PFAM: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 2473930..2474955 Pseudomonas putida F1 5190370 YP_001267505.1 CDS Pput_2182 NC_009512.1 2475119 2476315 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2475119..2476315 Pseudomonas putida F1 5190770 YP_001267506.1 CDS Pput_2183 NC_009512.1 2476699 2477979 D PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; aromatic amino acid permease 2476699..2477979 Pseudomonas putida F1 5190771 YP_001267507.1 CDS Pput_2184 NC_009512.1 2478043 2479239 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2478043..2479239) Pseudomonas putida F1 5190570 YP_001267508.1 CDS Pput_2185 NC_009512.1 2479540 2480040 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 2479540..2480040 Pseudomonas putida F1 5190571 YP_001267509.1 CDS Pput_2186 NC_009512.1 2480388 2481695 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2480388..2481695 Pseudomonas putida F1 5194787 YP_001267510.1 CDS Pput_2187 NC_009512.1 2481692 2484790 D PFAM: acriflavin resistance protein; acriflavin resistance protein 2481692..2484790 Pseudomonas putida F1 5194788 YP_001267511.1 CDS Pput_2188 NC_009512.1 2484787 2487894 D PFAM: acriflavin resistance protein; acriflavin resistance protein 2484787..2487894 Pseudomonas putida F1 5190280 YP_001267512.1 CDS Pput_2189 NC_009512.1 2487891 2489381 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2487891..2489381 Pseudomonas putida F1 5190281 YP_001267513.1 CDS Pput_2190 NC_009512.1 2489512 2491599 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase 2489512..2491599 Pseudomonas putida F1 5190437 YP_001267514.1 CDS Pput_2191 NC_009512.1 2491651 2491911 R PFAM: protein of unknown function DUF1652; hypothetical protein complement(2491651..2491911) Pseudomonas putida F1 5190438 YP_001267515.1 CDS Pput_2192 NC_009512.1 2492186 2492833 R PFAM: protein of unknown function DUF1345; hypothetical protein complement(2492186..2492833) Pseudomonas putida F1 5195481 YP_001267516.1 CDS Pput_2193 NC_009512.1 2493007 2494644 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2493007..2494644 Pseudomonas putida F1 5195482 YP_001267517.1 CDS Pput_2194 NC_009512.1 2494723 2495235 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 2494723..2495235 Pseudomonas putida F1 5193756 YP_001267518.1 CDS Pput_2195 NC_009512.1 2495232 2496176 D PFAM: FecR protein; anti-FecI sigma factor FecR 2495232..2496176 Pseudomonas putida F1 5193757 YP_001267519.1 CDS Pput_2196 NC_009512.1 2496244 2498649 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2496244..2498649 Pseudomonas putida F1 5190473 YP_001267520.1 CDS Pput_2197 NC_009512.1 2498775 2499713 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2498775..2499713) Pseudomonas putida F1 5190474 YP_001267521.1 CDS Pput_2198 NC_009512.1 2499862 2500689 D PFAM: amidohydrolase 2; amidohydrolase 2 2499862..2500689 Pseudomonas putida F1 5193754 YP_001267522.1 CDS Pput_2199 NC_009512.1 2500867 2501607 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2500867..2501607 Pseudomonas putida F1 5193755 YP_001267523.1 CDS Pput_2200 NC_009512.1 2501810 2502226 R PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(2501810..2502226) Pseudomonas putida F1 5193514 YP_001267524.1 CDS Pput_2201 NC_009512.1 2502226 2503545 R flavoprotein involved in K+ transport-like protein complement(2502226..2503545) Pseudomonas putida F1 5193515 YP_001267525.1 CDS Pput_2202 NC_009512.1 2503863 2504540 D PFAM: protein of unknown function DUF1028; hypothetical protein 2503863..2504540 Pseudomonas putida F1 5194564 YP_001267526.1 CDS Pput_2203 NC_009512.1 2504533 2505693 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2504533..2505693 Pseudomonas putida F1 5194565 YP_001267527.1 CDS Pput_2204 NC_009512.1 2505735 2507003 R PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(2505735..2507003) Pseudomonas putida F1 5194077 YP_001267528.1 CDS Pput_2205 NC_009512.1 2507104 2509521 R PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(2507104..2509521) Pseudomonas putida F1 5194078 YP_001267529.1 CDS Pput_2206 NC_009512.1 2509784 2510134 R PFAM: Cupin 2, conserved barrel domain protein; cupin complement(2509784..2510134) Pseudomonas putida F1 5191989 YP_001267530.1 CDS Pput_2207 NC_009512.1 2510252 2511157 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2510252..2511157 Pseudomonas putida F1 5191990 YP_001267531.1 CDS Pput_2208 NC_009512.1 2511264 2512463 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2511264..2512463 Pseudomonas putida F1 5195499 YP_001267532.1 CDS Pput_2209 NC_009512.1 2512511 2513122 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(2512511..2513122) Pseudomonas putida F1 5195500 YP_001267533.1 CDS Pput_2210 NC_009512.1 2513227 2514204 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 2513227..2514204 Pseudomonas putida F1 5192331 YP_001267534.1 CDS Pput_2211 NC_009512.1 2514206 2515057 R PFAM: SCP-like extracellular; SCP-like extracellular protein complement(2514206..2515057) Pseudomonas putida F1 5192332 YP_001267535.1 CDS Pput_2212 NC_009512.1 2515264 2515875 R PFAM: cell wall hydrolase, SleB; cell wall hydrolase SleB complement(2515264..2515875) Pseudomonas putida F1 5194632 YP_001267536.1 CDS Pput_2213 NC_009512.1 2515910 2516836 R PFAM: Auxin Efflux Carrier; auxin efflux carrier complement(2515910..2516836) Pseudomonas putida F1 5194633 YP_001267537.1 CDS Pput_2214 NC_009512.1 2516963 2517826 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2516963..2517826) Pseudomonas putida F1 5193532 YP_001267538.1 CDS Pput_2215 NC_009512.1 2517920 2518768 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2517920..2518768) Pseudomonas putida F1 5193533 YP_001267539.1 CDS Pput_2216 NC_009512.1 2518765 2519781 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(2518765..2519781) Pseudomonas putida F1 5190960 YP_001267540.1 CDS Pput_2217 NC_009512.1 2519877 2522021 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2519877..2522021) Pseudomonas putida F1 5190961 YP_001267541.1 CDS Pput_2218 NC_009512.1 2522269 2523588 D PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; Na+/H+ antiporter NhaC 2522269..2523588 Pseudomonas putida F1 5190923 YP_001267542.1 CDS Pput_2219 NC_009512.1 2523603 2524610 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(2523603..2524610) Pseudomonas putida F1 5190924 YP_001267543.1 CDS Pput_2220 NC_009512.1 2524884 2526668 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2524884..2526668) Pseudomonas putida F1 5192434 YP_001267544.1 CDS Pput_2221 NC_009512.1 2526746 2528368 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2526746..2528368) Pseudomonas putida F1 5192435 YP_001267545.1 CDS Pput_2222 NC_009512.1 2528562 2529968 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2528562..2529968 Pseudomonas putida F1 5192046 YP_001267546.1 CDS Pput_2223 NC_009512.1 2529978 2530610 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; response regulator receiver protein 2529978..2530610 Pseudomonas putida F1 5192047 YP_001267547.1 CDS Pput_2224 NC_009512.1 2530791 2531264 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2530791..2531264 Pseudomonas putida F1 5192469 YP_001267548.1 CDS Pput_2225 NC_009512.1 2531295 2532488 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 2531295..2532488 Pseudomonas putida F1 5192470 YP_001267549.1 CDS Pput_2226 NC_009512.1 2532485 2534020 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2532485..2534020 Pseudomonas putida F1 5191308 YP_001267550.1 CDS Pput_2227 NC_009512.1 2534949 2535695 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2534949..2535695 Pseudomonas putida F1 5191309 YP_001267551.1 CDS Pput_2228 NC_009512.1 2535705 2537771 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase complement(2535705..2537771) Pseudomonas putida F1 5191320 YP_001267552.1 CDS Pput_2229 NC_009512.1 2537834 2539495 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase complement(2537834..2539495) Pseudomonas putida F1 5191321 YP_001267553.1 CDS Pput_2230 NC_009512.1 2539553 2540962 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(2539553..2540962) Pseudomonas putida F1 5195031 YP_001267554.1 CDS Pput_2231 NC_009512.1 2541013 2542416 R TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; cytochrome c oxidase cbb3 type, accessory protein FixG complement(2541013..2542416) Pseudomonas putida F1 5195032 YP_001267555.1 CDS Pput_2232 NC_009512.1 2542538 2542777 R hypothetical protein complement(2542538..2542777) Pseudomonas putida F1 5192014 YP_001267556.1 CDS Pput_2233 NC_009512.1 2542947 2543465 D PFAM: MgtC/SapB transporter; MgtC/SapB transporter 2542947..2543465 Pseudomonas putida F1 5192015 YP_001267557.1 CDS Pput_2234 NC_009512.1 2543998 2544897 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(2543998..2544897) Pseudomonas putida F1 5191968 YP_001267558.1 CDS Pput_2235 NC_009512.1 2544917 2545315 R PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator complement(2544917..2545315) Pseudomonas putida F1 5191969 YP_001267559.1 CDS Pput_2236 NC_009512.1 2545391 2546269 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator complement(2545391..2546269) Pseudomonas putida F1 5192275 YP_001267560.1 CDS Pput_2237 NC_009512.1 2546363 2547628 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2546363..2547628 Pseudomonas putida F1 5192276 YP_001267561.1 CDS Pput_2238 NC_009512.1 2547773 2549569 D TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2547773..2549569 Pseudomonas putida F1 5191712 YP_001267562.1 CDS Pput_2239 NC_009512.1 2549614 2550495 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2549614..2550495 Pseudomonas putida F1 5191713 YP_001267563.1 CDS Pput_2240 NC_009512.1 2550648 2551700 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(2550648..2551700) Pseudomonas putida F1 5191791 YP_001267564.1 CDS Pput_2241 NC_009512.1 2551888 2552310 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2551888..2552310 Pseudomonas putida F1 5191792 YP_001267565.1 CDS Pput_2242 NC_009512.1 2552385 2552984 R PFAM: lipid-binding START domain protein; lipid-binding START domain-containing protein complement(2552385..2552984) Pseudomonas putida F1 5192738 YP_001267566.1 CDS Pput_2243 NC_009512.1 2553074 2554009 R PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; hypothetical protein complement(2553074..2554009) Pseudomonas putida F1 5192739 YP_001267567.1 CDS Pput_2244 NC_009512.1 2554017 2555408 R coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein complement(2554017..2555408) Pseudomonas putida F1 5192905 YP_001267568.1 CDS Pput_2245 NC_009512.1 2555425 2556405 R TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein complement(2555425..2556405) Pseudomonas putida F1 5192906 YP_001267569.1 CDS Pput_2246 NC_009512.1 2556666 2557550 D hypothetical protein 2556666..2557550 Pseudomonas putida F1 5194185 YP_001267570.1 CDS Pput_2247 NC_009512.1 2557699 2558382 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2557699..2558382 Pseudomonas putida F1 5194186 YP_001267571.1 CDS Pput_2248 NC_009512.1 2558421 2559428 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2558421..2559428) Pseudomonas putida F1 5192708 YP_001267572.1 CDS Pput_2249 NC_009512.1 2559590 2560060 D hypothetical protein 2559590..2560060 Pseudomonas putida F1 5192709 YP_001267573.1 CDS Pput_2250 NC_009512.1 2560044 2560376 D hypothetical protein 2560044..2560376 Pseudomonas putida F1 5193392 YP_001267574.1 CDS Pput_2251 NC_009512.1 2560421 2560747 R hypothetical protein complement(2560421..2560747) Pseudomonas putida F1 5193393 YP_001267575.1 CDS Pput_2252 NC_009512.1 2561254 2561676 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2561254..2561676 Pseudomonas putida F1 5190224 YP_001267576.1 CDS Pput_2253 NC_009512.1 2561821 2562855 D hypothetical protein 2561821..2562855 Pseudomonas putida F1 5190225 YP_001267577.1 CDS Pput_2254 NC_009512.1 2563186 2564058 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2563186..2564058 Pseudomonas putida F1 5191260 YP_001267578.1 CDS Pput_2255 NC_009512.1 2564055 2564774 R hypothetical protein complement(2564055..2564774) Pseudomonas putida F1 5191261 YP_001267579.1 CDS Pput_2256 NC_009512.1 2564856 2565107 R hypothetical protein complement(2564856..2565107) Pseudomonas putida F1 5190318 YP_001267580.1 CDS Pput_2257 NC_009512.1 2565353 2566819 D hypothetical protein 2565353..2566819 Pseudomonas putida F1 5190319 YP_001267581.1 CDS Pput_2258 NC_009512.1 2566816 2567709 D hypothetical protein 2566816..2567709 Pseudomonas putida F1 5191584 YP_001267582.1 CDS Pput_2259 NC_009512.1 2567769 2568725 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2567769..2568725) Pseudomonas putida F1 5191585 YP_001267583.1 CDS Pput_2260 NC_009512.1 2568874 2570958 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; 5-oxoprolinase complement(2568874..2570958) Pseudomonas putida F1 5193506 YP_001267584.1 CDS Pput_2261 NC_009512.1 2570972 2572717 R PFAM: Hydantoinase B/oxoprolinase; hydantoinase B/oxoprolinase complement(2570972..2572717) Pseudomonas putida F1 5193507 YP_001267585.1 CDS Pput_2262 NC_009512.1 2572872 2573792 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2572872..2573792) Pseudomonas putida F1 5194984 YP_001267586.1 CDS Pput_2263 NC_009512.1 2573807 2574247 D PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 2573807..2574247 Pseudomonas putida F1 5194985 YP_001267587.1 CDS Pput_2264 NC_009512.1 2574574 2575593 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(2574574..2575593) Pseudomonas putida F1 5194449 YP_001267588.1 CDS Pput_2265 NC_009512.1 2575730 2577307 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2575730..2577307) Pseudomonas putida F1 5194450 YP_001267589.1 CDS Pput_2266 NC_009512.1 2577479 2577841 R hypothetical protein complement(2577479..2577841) Pseudomonas putida F1 5193982 YP_001267590.1 CDS Pput_2267 NC_009512.1 2577838 2577990 R hypothetical protein complement(2577838..2577990) Pseudomonas putida F1 5193983 YP_001267591.1 CDS Pput_2268 NC_009512.1 2578408 2579484 D TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin biosynthesis protein CobW 2578408..2579484 Pseudomonas putida F1 5194301 YP_001267592.1 CDS cobN NC_009512.1 2579488 2583249 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2579488..2583249 Pseudomonas putida F1 5194302 YP_001267593.1 CDS Pput_2270 NC_009512.1 2583251 2584264 D PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; magnesium chelatase 2583251..2584264 Pseudomonas putida F1 5192319 YP_001267594.1 CDS Pput_2271 NC_009512.1 2584342 2584932 D hypothetical protein 2584342..2584932 Pseudomonas putida F1 5192320 YP_001267595.1 CDS Pput_2272 NC_009512.1 2585039 2585305 R hypothetical protein complement(2585039..2585305) Pseudomonas putida F1 5194067 YP_001267596.1 CDS Pput_2273 NC_009512.1 2585647 2586972 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 2585647..2586972 Pseudomonas putida F1 5194068 YP_001267597.1 CDS Pput_2274 NC_009512.1 2587308 2589308 R PFAM: peptidase U32; peptidase U32 complement(2587308..2589308) Pseudomonas putida F1 5190509 YP_001267598.1 CDS Pput_2275 NC_009512.1 2589523 2589903 R PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(2589523..2589903) Pseudomonas putida F1 5190510 YP_001267599.1 CDS Pput_2276 NC_009512.1 2590040 2590732 D PFAM: protein of unknown function DUF633; hypothetical protein 2590040..2590732 Pseudomonas putida F1 5193088 YP_001267600.1 CDS Pput_2277 NC_009512.1 2590734 2590994 R hypothetical protein complement(2590734..2590994) Pseudomonas putida F1 5193089 YP_001267601.1 CDS Pput_2278 NC_009512.1 2591118 2592050 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2591118..2592050 Pseudomonas putida F1 5192925 YP_001267602.1 CDS Pput_2279 NC_009512.1 2592152 2593303 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(2592152..2593303) Pseudomonas putida F1 5192926 YP_001267603.1 CDS Pput_2280 NC_009512.1 2593320 2594393 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2593320..2594393) Pseudomonas putida F1 5192992 YP_001267604.1 CDS Pput_2281 NC_009512.1 2594722 2600559 D hypothetical protein 2594722..2600559 Pseudomonas putida F1 5192993 YP_001267605.1 CDS Pput_2282 NC_009512.1 2600578 2602554 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 2600578..2602554 Pseudomonas putida F1 5192714 YP_001267606.1 CDS Pput_2283 NC_009512.1 2602551 2603207 D PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2602551..2603207 Pseudomonas putida F1 5192715 YP_001267607.1 CDS Pput_2284 NC_009512.1 2603204 2603869 D PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2603204..2603869 Pseudomonas putida F1 5192858 YP_001267608.1 CDS Pput_2285 NC_009512.1 2603875 2605554 D branched chain amino acid ABC transporter substrate-binding protein 2603875..2605554 Pseudomonas putida F1 5192859 YP_001267609.1 CDS Pput_2286 NC_009512.1 2605567 2606208 D PFAM: SurA N-terminal domain; SurA domain-containing protein 2605567..2606208 Pseudomonas putida F1 5190951 YP_001267610.1 CDS Pput_2287 NC_009512.1 2606461 2606991 D PFAM: response regulator receiver; response regulator receiver protein 2606461..2606991 Pseudomonas putida F1 5190952 YP_001267611.1 CDS Pput_2288 NC_009512.1 2607052 2608848 D PFAM: type II secretion system protein E; type II secretion system protein E 2607052..2608848 Pseudomonas putida F1 5193434 YP_001267612.1 CDS Pput_2289 NC_009512.1 2608832 2609611 D hypothetical protein 2608832..2609611 Pseudomonas putida F1 5193435 YP_001267613.1 CDS Pput_2290 NC_009512.1 2609613 2610155 D hypothetical protein 2609613..2610155 Pseudomonas putida F1 5191225 YP_001267614.1 CDS Pput_2291 NC_009512.1 2610142 2610705 D hypothetical protein 2610142..2610705 Pseudomonas putida F1 5191226 YP_001267615.1 CDS Pput_2292 NC_009512.1 2610705 2611211 D hypothetical protein 2610705..2611211 Pseudomonas putida F1 5195099 YP_001267616.1 CDS Pput_2293 NC_009512.1 2611208 2613073 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; Tetratricopeptide TPR_2 repeat protein; type II and III secretion system protein 2611208..2613073 Pseudomonas putida F1 5195100 YP_001267617.1 CDS Pput_2294 NC_009512.1 2613070 2613549 D Type II secretory pathway pseudopilin PulG-like protein 2613070..2613549 Pseudomonas putida F1 5192520 YP_001267618.1 CDS Pput_2295 NC_009512.1 2613555 2613929 D PFAM: type II secretion system protein G; type II secretion system protein G 2613555..2613929 Pseudomonas putida F1 5192521 YP_001267619.1 CDS Pput_2296 NC_009512.1 2613904 2614431 D hypothetical protein 2613904..2614431 Pseudomonas putida F1 5195003 YP_001267620.1 CDS Pput_2297 NC_009512.1 2614428 2614829 D chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2614428..2614829 Pseudomonas putida F1 5195004 YP_001267621.1 CDS Pput_2298 NC_009512.1 2614826 2615239 D hypothetical protein 2614826..2615239 Pseudomonas putida F1 5195080 YP_001267622.1 CDS Pput_2299 NC_009512.1 2615274 2616125 D PFAM: Curli production assembly/transport component CsgG; curli production assembly/transport protein CsgG 2615274..2616125 Pseudomonas putida F1 5195081 YP_001267623.1 CDS Pput_2300 NC_009512.1 2616194 2616430 D hypothetical protein 2616194..2616430 Pseudomonas putida F1 5190526 YP_001267624.1 CDS Pput_2301 NC_009512.1 2616773 2618683 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: PAS domain containing protein; AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 2616773..2618683 Pseudomonas putida F1 5190527 YP_001267625.1 CDS Pput_2302 NC_009512.1 2618685 2620418 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2618685..2620418 Pseudomonas putida F1 5193970 YP_001267626.1 CDS Pput_2303 NC_009512.1 2620408 2621085 D hypothetical protein 2620408..2621085 Pseudomonas putida F1 5193971 YP_001267627.1 CDS Pput_2304 NC_009512.1 2621078 2622370 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase 2621078..2622370 Pseudomonas putida F1 5190596 YP_001267628.1 CDS Pput_2305 NC_009512.1 2622592 2623905 R hypothetical protein complement(2622592..2623905) Pseudomonas putida F1 5190597 YP_001267629.1 CDS Pput_2306 NC_009512.1 2624045 2625538 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(2624045..2625538) Pseudomonas putida F1 5191977 YP_001267630.1 CDS Pput_2307 NC_009512.1 2625879 2627507 D PFAM: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; hypothetical protein 2625879..2627507 Pseudomonas putida F1 5191978 YP_001267631.1 CDS Pput_2308 NC_009512.1 2627556 2628986 D PFAM: Radical SAM domain protein; radical SAM domain-containing protein 2627556..2628986 Pseudomonas putida F1 5190677 YP_001267632.1 CDS Pput_2309 NC_009512.1 2628988 2629311 D PFAM: Quinohemoprotein amine dehydrogenase, gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma 2628988..2629311 Pseudomonas putida F1 5190678 YP_001267633.1 CDS Pput_2310 NC_009512.1 2629343 2630464 D hypothetical protein 2629343..2630464 Pseudomonas putida F1 5191004 YP_001267634.1 CDS Pput_2311 NC_009512.1 2630599 2632272 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2630599..2632272 Pseudomonas putida F1 5191005 YP_001267635.1 CDS mobA NC_009512.1 2632407 2632982 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2632407..2632982) Pseudomonas putida F1 5193486 YP_001267636.1 CDS Pput_2313 NC_009512.1 2633044 2636172 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2633044..2636172) Pseudomonas putida F1 5193487 YP_001267637.1 CDS Pput_2314 NC_009512.1 2636184 2637359 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2636184..2637359) Pseudomonas putida F1 5191562 YP_001267638.1 CDS Pput_2315 NC_009512.1 2637605 2638306 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2637605..2638306 Pseudomonas putida F1 5191563 YP_001267639.1 CDS Pput_2316 NC_009512.1 2638313 2639611 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2638313..2639611 Pseudomonas putida F1 5193086 YP_001267640.1 CDS Pput_2317 NC_009512.1 2639855 2640286 D PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 2639855..2640286 Pseudomonas putida F1 5193087 YP_001267641.1 CDS Pput_2318 NC_009512.1 2640467 2642026 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 2640467..2642026 Pseudomonas putida F1 5195455 YP_001267642.1 CDS Pput_2319 NC_009512.1 2642153 2643334 R hypothetical protein complement(2642153..2643334) Pseudomonas putida F1 5195456 YP_001267643.1 CDS Pput_2320 NC_009512.1 2643386 2643865 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2643386..2643865) Pseudomonas putida F1 5193374 YP_001267644.1 CDS Pput_2321 NC_009512.1 2643976 2645595 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(2643976..2645595) Pseudomonas putida F1 5193375 YP_001267645.1 CDS Pput_2322 NC_009512.1 2646137 2647201 D hypothetical protein 2646137..2647201 Pseudomonas putida F1 5194158 YP_001267646.1 CDS Pput_2323 NC_009512.1 2647431 2648549 D hypothetical protein 2647431..2648549 Pseudomonas putida F1 5194159 YP_001267647.1 CDS Pput_2324 NC_009512.1 2648597 2649445 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 2648597..2649445 Pseudomonas putida F1 5192210 YP_001267648.1 CDS Pput_2325 NC_009512.1 2649410 2650057 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(2649410..2650057) Pseudomonas putida F1 5192211 YP_001267649.1 CDS Pput_2326 NC_009512.1 2650283 2651854 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; integral membrane protein TerC 2650283..2651854 Pseudomonas putida F1 5193110 YP_001267650.1 CDS Pput_2327 NC_009512.1 2651817 2652704 R TIGRFAM: RarD protein, DMT superfamily transporter; transporter DMT superfamily protein complement(2651817..2652704) Pseudomonas putida F1 5193111 YP_001267651.1 CDS Pput_2328 NC_009512.1 2652738 2654324 R PFAM: EAL domain protein; diguanylate phosphodiesterase complement(2652738..2654324) Pseudomonas putida F1 5190403 YP_001267652.1 CDS Pput_2329 NC_009512.1 2654623 2655699 D TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2654623..2655699 Pseudomonas putida F1 5190404 YP_001267653.1 CDS Pput_2330 NC_009512.1 2655720 2656526 R hypothetical protein complement(2655720..2656526) Pseudomonas putida F1 5193370 YP_001267654.1 CDS Pput_2331 NC_009512.1 2656656 2657342 R PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(2656656..2657342) Pseudomonas putida F1 5193371 YP_001267655.1 CDS Pput_2332 NC_009512.1 2657536 2659599 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2657536..2659599 Pseudomonas putida F1 5190425 YP_001267656.1 CDS Pput_2333 NC_009512.1 2659606 2661222 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase complement(2659606..2661222) Pseudomonas putida F1 5190426 YP_001267657.1 CDS Pput_2334 NC_009512.1 2661301 2662500 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(2661301..2662500) Pseudomonas putida F1 5190300 YP_001267658.1 CDS Pput_2335 NC_009512.1 2662581 2663996 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(2662581..2663996) Pseudomonas putida F1 5190301 YP_001267659.1 CDS Pput_2336 NC_009512.1 2663993 2667172 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2663993..2667172) Pseudomonas putida F1 5192153 YP_001267660.1 CDS Pput_2337 NC_009512.1 2667185 2668426 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2667185..2668426) Pseudomonas putida F1 5192154 YP_001267661.1 CDS Pput_2338 NC_009512.1 2668616 2669806 R PFAM: type II secretion system protein; type II secretion system protein complement(2668616..2669806) Pseudomonas putida F1 5193809 YP_001267662.1 CDS Pput_2339 NC_009512.1 2669818 2670243 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G complement(2669818..2670243) Pseudomonas putida F1 5193810 YP_001267663.1 CDS Pput_2340 NC_009512.1 2670366 2671022 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 2670366..2671022 Pseudomonas putida F1 5192321 YP_001267664.1 CDS Pput_2341 NC_009512.1 2671197 2672648 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2671197..2672648 Pseudomonas putida F1 5192322 YP_001267665.1 CDS Pput_2342 NC_009512.1 2672955 2674448 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2672955..2674448 Pseudomonas putida F1 5194152 YP_001267666.1 CDS Pput_2343 NC_009512.1 2674417 2675844 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 2674417..2675844 Pseudomonas putida F1 5194153 YP_001267667.1 CDS Pput_2344 NC_009512.1 2675859 2676161 R hypothetical protein complement(2675859..2676161) Pseudomonas putida F1 5190772 YP_001267668.1 CDS Pput_2345 NC_009512.1 2676248 2677600 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter complement(2676248..2677600) Pseudomonas putida F1 5190773 YP_001267669.1 CDS Pput_2346 NC_009512.1 2677712 2678251 R TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; carbohydrate kinase complement(2677712..2678251) Pseudomonas putida F1 5191047 YP_001267670.1 CDS Pput_2347 NC_009512.1 2678458 2679477 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 2678458..2679477 Pseudomonas putida F1 5191048 YP_001267671.1 CDS Pput_2348 NC_009512.1 2679691 2681013 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 2679691..2681013 Pseudomonas putida F1 5195157 YP_001267672.1 CDS Pput_2349 NC_009512.1 2680979 2684260 R PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; Hpt sensor hybrid histidine kinase complement(2680979..2684260) Pseudomonas putida F1 5195158 YP_001267673.1 CDS Pput_2350 NC_009512.1 2684274 2684888 R PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator complement(2684274..2684888) Pseudomonas putida F1 5190812 YP_001267674.1 CDS Pput_2351 NC_009512.1 2685110 2685352 R PFAM: protein of unknown function DUF1272; hypothetical protein complement(2685110..2685352) Pseudomonas putida F1 5190813 YP_001267675.1 CDS Pput_2352 NC_009512.1 2685419 2686171 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase complement(2685419..2686171) Pseudomonas putida F1 5193118 YP_001267676.1 CDS Pput_2353 NC_009512.1 2686206 2686592 R hypothetical protein complement(2686206..2686592) Pseudomonas putida F1 5193119 YP_001267677.1 CDS Pput_2354 NC_009512.1 2686592 2687278 R TIGRFAM: cobalt transporter, subunit CbtA; cobalt transporter subunit CbtA complement(2686592..2687278) Pseudomonas putida F1 5192078 YP_001267678.1 CDS Pput_2355 NC_009512.1 2687288 2687476 R TIGRFAM: cobalt transporter, subunit CbtB; cobalt transporter subunit CbtB complement(2687288..2687476) Pseudomonas putida F1 5192079 YP_001267679.1 CDS Pput_2356 NC_009512.1 2687912 2688391 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2687912..2688391) Pseudomonas putida F1 5193446 YP_001267680.1 CDS Pput_2357 NC_009512.1 2688515 2689144 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2688515..2689144 Pseudomonas putida F1 5193447 YP_001267681.1 CDS Pput_2358 NC_009512.1 2689166 2690038 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2689166..2690038 Pseudomonas putida F1 5192163 YP_001267682.1 CDS Pput_2359 NC_009512.1 2690135 2691022 D PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein 2690135..2691022 Pseudomonas putida F1 5192164 YP_001267683.1 CDS Pput_2360 NC_009512.1 2691319 2691579 D PFAM: protein of unknown function DUF1652; hypothetical protein 2691319..2691579 Pseudomonas putida F1 5192298 YP_001267684.1 CDS Pput_2361 NC_009512.1 2691600 2692214 R hypothetical protein complement(2691600..2692214) Pseudomonas putida F1 5192299 YP_001267685.1 CDS Pput_2362 NC_009512.1 2692301 2692588 R hypothetical protein complement(2692301..2692588) Pseudomonas putida F1 5190886 YP_001267686.1 CDS Pput_2363 NC_009512.1 2692758 2693435 R PFAM: 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase complement(2692758..2693435) Pseudomonas putida F1 5190887 YP_001267687.1 CDS Pput_2364 NC_009512.1 2693564 2695060 R PFAM: Curlin associated repeat protein; curlin-associated protein complement(2693564..2695060) Pseudomonas putida F1 5195267 YP_001267688.1 CDS Pput_2365 NC_009512.1 2695026 2695499 R PFAM: Curlin associated repeat protein; curlin-associated protein complement(2695026..2695499) Pseudomonas putida F1 5195268 YP_001267689.1 CDS Pput_2366 NC_009512.1 2695515 2697746 R hypothetical protein complement(2695515..2697746) Pseudomonas putida F1 5191580 YP_001267690.1 CDS Pput_2367 NC_009512.1 2697779 2699107 R hypothetical protein complement(2697779..2699107) Pseudomonas putida F1 5191581 YP_001267691.1 CDS Pput_2368 NC_009512.1 2699368 2700489 R hypothetical protein complement(2699368..2700489) Pseudomonas putida F1 5190675 YP_001267692.1 CDS Pput_2369 NC_009512.1 2700489 2703161 R hypothetical protein complement(2700489..2703161) Pseudomonas putida F1 5190676 YP_001267693.1 CDS Pput_2370 NC_009512.1 2703176 2704054 R hypothetical protein complement(2703176..2704054) Pseudomonas putida F1 5190800 YP_001267694.1 CDS Pput_2371 NC_009512.1 2704054 2706231 R PFAM: Rhs element Vgr protein; Rhs element Vgr protein complement(2704054..2706231) Pseudomonas putida F1 5190801 YP_001267695.1 CDS Pput_2372 NC_009512.1 2706245 2707093 R hypothetical protein complement(2706245..2707093) Pseudomonas putida F1 5191718 YP_001267696.1 CDS Pput_2373 NC_009512.1 2707376 2708143 R PAP2 (acid phosphatase) superfamily protein-like protein complement(2707376..2708143) Pseudomonas putida F1 5191719 YP_001267697.1 CDS Pput_2374 NC_009512.1 2708146 2708835 R PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA complement(2708146..2708835) Pseudomonas putida F1 5193112 YP_001267698.1 CDS Pput_2375 NC_009512.1 2709114 2709860 D gluconate 2-dehydrogenase 2709114..2709860 Pseudomonas putida F1 5193113 YP_001267699.1 CDS Pput_2376 NC_009512.1 2709864 2711648 D PFAM: glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2709864..2711648 Pseudomonas putida F1 5192124 YP_001267700.1 CDS Pput_2377 NC_009512.1 2711655 2712908 D PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 2711655..2712908 Pseudomonas putida F1 5192125 YP_001267701.1 CDS Pput_2378 NC_009512.1 2713175 2714194 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI 2713175..2714194 Pseudomonas putida F1 5191454 YP_001267702.1 CDS Pput_2379 NC_009512.1 2714259 2715038 D PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2714259..2715038 Pseudomonas putida F1 5191455 YP_001267703.1 CDS Pput_2380 NC_009512.1 2715031 2715981 D PFAM: PfkB domain protein; ribokinase-like domain-containing protein 2715031..2715981 Pseudomonas putida F1 5195064 YP_001267704.1 CDS Pput_2381 NC_009512.1 2715944 2717332 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2715944..2717332 Pseudomonas putida F1 5195065 YP_001267705.1 CDS Pput_2382 NC_009512.1 2717343 2718305 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; gluconate 2-dehydrogenase 2717343..2718305 Pseudomonas putida F1 5190734 YP_001267706.1 CDS Pput_2383 NC_009512.1 2718348 2719313 R PFAM: Endonuclease I; deoxyribonuclease I complement(2718348..2719313) Pseudomonas putida F1 5190735 YP_001267707.1 CDS Pput_2384 NC_009512.1 2719328 2719711 R hypothetical protein complement(2719328..2719711) Pseudomonas putida F1 5195354 YP_001267708.1 CDS Pput_2385 NC_009512.1 2719842 2722205 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) complement(2719842..2722205) Pseudomonas putida F1 5195355 YP_001267709.1 CDS Pput_2386 NC_009512.1 2722342 2723103 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2722342..2723103 Pseudomonas putida F1 5193752 YP_001267710.1 CDS Pput_2387 NC_009512.1 2723100 2724362 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2723100..2724362 Pseudomonas putida F1 5193753 YP_001267711.1 CDS Pput_2388 NC_009512.1 2724355 2725350 R PFAM: aldo/keto reductase; aldo/keto reductase complement(2724355..2725350) Pseudomonas putida F1 5193006 YP_001267712.1 CDS Pput_2389 NC_009512.1 2725447 2726298 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2725447..2726298) Pseudomonas putida F1 5193007 YP_001267713.1 CDS Pput_2390 NC_009512.1 2726361 2727545 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2726361..2727545) Pseudomonas putida F1 5194978 YP_001267714.1 CDS Pput_2391 NC_009512.1 2727813 2728472 D alpha/beta fold family hydrolase-like protein 2727813..2728472 Pseudomonas putida F1 5194979 YP_001267715.1 CDS Pput_2392 NC_009512.1 2728457 2729338 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2728457..2729338) Pseudomonas putida F1 5192790 YP_001267716.1 CDS Pput_2393 NC_009512.1 2729524 2731167 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2729524..2731167 Pseudomonas putida F1 5192791 YP_001267717.1 CDS Pput_2394 NC_009512.1 2731294 2733837 R PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome, central region domain protein; PAS fold-2 domain protein; putative GAF sensor protein complement(2731294..2733837) Pseudomonas putida F1 5195274 YP_001267718.1 CDS Pput_2395 NC_009512.1 2734064 2734681 D hypothetical protein 2734064..2734681 Pseudomonas putida F1 5195275 YP_001267719.1 CDS Pput_2396 NC_009512.1 2734722 2735162 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(2734722..2735162) Pseudomonas putida F1 5194876 YP_001267720.1 CDS Pput_2397 NC_009512.1 2735306 2738353 D PFAM: aminoglycoside phosphotransferase; peptidase M23B; aminotransferase class-III; hypothetical protein 2735306..2738353 Pseudomonas putida F1 5194877 YP_001267721.1 CDS Pput_2398 NC_009512.1 2738432 2739556 R PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(2738432..2739556) Pseudomonas putida F1 5192585 YP_001267722.1 CDS Pput_2399 NC_009512.1 2739655 2740125 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(2739655..2740125) Pseudomonas putida F1 5192586 YP_001267723.1 CDS Pput_2400 NC_009512.1 2740323 2741153 D catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 2740323..2741153 Pseudomonas putida F1 5194634 YP_001267724.1 CDS Pput_2401 NC_009512.1 2741229 2742677 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2741229..2742677 Pseudomonas putida F1 5194635 YP_001267725.1 CDS Pput_2402 NC_009512.1 2742705 2744651 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2742705..2744651 Pseudomonas putida F1 5194504 YP_001267726.1 CDS Pput_2403 NC_009512.1 2744648 2745889 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2744648..2745889 Pseudomonas putida F1 5194505 YP_001267727.1 CDS Pput_2404 NC_009512.1 2745904 2747649 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2745904..2747649 Pseudomonas putida F1 5194512 YP_001267728.1 CDS Pput_2405 NC_009512.1 2747630 2748655 R PFAM: protein of unknown function DUF323; hypothetical protein complement(2747630..2748655) Pseudomonas putida F1 5194513 YP_001267729.1 CDS Pput_2406 NC_009512.1 2748652 2750256 R PFAM: sulfatase; sulfatase complement(2748652..2750256) Pseudomonas putida F1 5194921 YP_001267730.1 CDS Pput_2407 NC_009512.1 2750578 2751969 D hypothetical protein 2750578..2751969 Pseudomonas putida F1 5194922 YP_001267731.1 CDS Pput_2408 NC_009512.1 2752004 2753245 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; putative 3-hydroxyphenylpropionic transporter MhpT 2752004..2753245 Pseudomonas putida F1 5195214 YP_001267732.1 CDS Pput_2409 NC_009512.1 2753262 2754407 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(2753262..2754407) Pseudomonas putida F1 5195215 YP_001267733.1 CDS Pput_2410 NC_009512.1 2754798 2756849 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor complement(2754798..2756849) Pseudomonas putida F1 5193092 YP_001267734.1 CDS Pput_2411 NC_009512.1 2757094 2757306 R hypothetical protein complement(2757094..2757306) Pseudomonas putida F1 5193093 YP_001267735.1 CDS Pput_2412 NC_009512.1 2757367 2759520 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(2757367..2759520) Pseudomonas putida F1 5194012 YP_001267736.1 CDS Pput_2413 NC_009512.1 2759592 2759981 R hypothetical protein complement(2759592..2759981) Pseudomonas putida F1 5194013 YP_001267737.1 CDS Pput_2414 NC_009512.1 2760384 2761277 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2760384..2761277) Pseudomonas putida F1 5193059 YP_001267738.1 CDS Pput_2415 NC_009512.1 2761379 2761792 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2761379..2761792 Pseudomonas putida F1 5193060 YP_001267739.1 CDS Pput_2416 NC_009512.1 2761950 2763266 D PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 2761950..2763266 Pseudomonas putida F1 5195090 YP_001267740.1 CDS Pput_2418 NC_009512.1 2763469 2764191 R hypothetical protein complement(2763469..2764191) Pseudomonas putida F1 5192126 YP_001267741.1 CDS Pput_2419 NC_009512.1 2764206 2766296 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(2764206..2766296) Pseudomonas putida F1 5195435 YP_001267742.1 CDS Pput_2420 NC_009512.1 2766583 2767530 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase complement(2766583..2767530) Pseudomonas putida F1 5195436 YP_001267743.1 CDS Pput_2421 NC_009512.1 2768033 2769283 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter complement(2768033..2769283) Pseudomonas putida F1 5190935 YP_001267744.1 CDS Pput_2422 NC_009512.1 2769280 2770572 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II complement(2769280..2770572) Pseudomonas putida F1 5190936 YP_001267745.1 CDS Pput_2423 NC_009512.1 2770645 2773737 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(2770645..2773737) Pseudomonas putida F1 5195259 YP_001267746.1 CDS Pput_2424 NC_009512.1 2773734 2774837 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2773734..2774837) Pseudomonas putida F1 5195260 YP_001267747.1 CDS Pput_2425 NC_009512.1 2774915 2775529 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(2774915..2775529) Pseudomonas putida F1 5191298 YP_001267748.1 CDS Pput_2426 NC_009512.1 2775611 2777074 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2775611..2777074 Pseudomonas putida F1 5191299 YP_001267749.1 CDS Pput_2427 NC_009512.1 2777193 2778521 R PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2777193..2778521) Pseudomonas putida F1 5191533 YP_001267750.1 CDS Pput_2428 NC_009512.1 2778557 2778790 R hypothetical protein complement(2778557..2778790) Pseudomonas putida F1 5191534 YP_001267751.1 CDS Pput_2429 NC_009512.1 2778809 2780011 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(2778809..2780011) Pseudomonas putida F1 5193842 YP_001267752.1 CDS Pput_2430 NC_009512.1 2780089 2780445 R hypothetical protein complement(2780089..2780445) Pseudomonas putida F1 5193843 YP_001267753.1 CDS Pput_2431 NC_009512.1 2780701 2781204 R PFAM: CinA domain protein; CinA domain-containing protein complement(2780701..2781204) Pseudomonas putida F1 5191500 YP_001267754.1 CDS Pput_2432 NC_009512.1 2781410 2781568 D hypothetical protein 2781410..2781568 Pseudomonas putida F1 5191501 YP_001267755.1 CDS Pput_2433 NC_009512.1 2782036 2784234 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding subunit complement(2782036..2784234) Pseudomonas putida F1 5194576 YP_001267756.1 CDS Pput_2434 NC_009512.1 2784231 2785232 R PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase complement(2784231..2785232) Pseudomonas putida F1 5194577 YP_001267757.1 CDS Pput_2435 NC_009512.1 2785229 2785756 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2785229..2785756) Pseudomonas putida F1 5191092 YP_001267758.1 CDS Pput_2436 NC_009512.1 2785855 2787642 R catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein complement(2785855..2787642) Pseudomonas putida F1 5191093 YP_001267759.1 CDS Pput_2437 NC_009512.1 2787791 2788309 D double-stranded beta helix domain-containing protein 2787791..2788309 Pseudomonas putida F1 5191884 YP_001267760.1 CDS Pput_2438 NC_009512.1 2788352 2788732 R hypothetical protein complement(2788352..2788732) Pseudomonas putida F1 5191885 YP_001267761.1 CDS Pput_2439 NC_009512.1 2788833 2789351 R hypothetical protein complement(2788833..2789351) Pseudomonas putida F1 5191882 YP_001267762.1 CDS Pput_2440 NC_009512.1 2789554 2790537 D PFAM: Integral membrane protein TerC; integral membrane protein TerC 2789554..2790537 Pseudomonas putida F1 5191883 YP_001267763.1 CDS Pput_2442 NC_009512.1 2790861 2791274 D PFAM: Class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 2790861..2791274 Pseudomonas putida F1 5192127 YP_001267764.1 CDS Pput_2443 NC_009512.1 2791533 2791895 D hypothetical protein 2791533..2791895 Pseudomonas putida F1 5194931 YP_001267765.1 CDS Pput_2444 NC_009512.1 2792121 2793029 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(2792121..2793029) Pseudomonas putida F1 5192740 YP_001267766.1 CDS potE NC_009512.1 2793078 2794418 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter complement(2793078..2794418) Pseudomonas putida F1 5192741 YP_001267767.1 CDS Pput_2447 NC_009512.1 2796419 2796847 R PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(2796419..2796847) Pseudomonas putida F1 5191446 YP_001267768.1 CDS Pput_2448 NC_009512.1 2796849 2797604 R PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein complement(2796849..2797604) Pseudomonas putida F1 5191517 YP_001267769.1 CDS Pput_2449 NC_009512.1 2797716 2798897 R PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2797716..2798897) Pseudomonas putida F1 5192012 YP_001267770.1 CDS Pput_2450 NC_009512.1 2799213 2799785 D PFAM: phosphoribosyltransferase; phosphoribosyltransferase 2799213..2799785 Pseudomonas putida F1 5192013 YP_001267771.1 CDS Pput_2451 NC_009512.1 2799787 2800665 R PFAM: UspA domain protein; UspA domain-containing protein complement(2799787..2800665) Pseudomonas putida F1 5194055 YP_001267772.1 CDS Pput_2453 NC_009512.1 2800884 2801774 R PFAM: UspA domain protein; UspA domain-containing protein complement(2800884..2801774) Pseudomonas putida F1 5191447 YP_001267773.1 CDS Pput_2454 NC_009512.1 2801936 2804218 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; Hemerythrin HHE cation binding domain protein; heavy metal translocating P-type ATPase complement(2801936..2804218) Pseudomonas putida F1 5194442 YP_001267774.1 CDS Pput_2455 NC_009512.1 2804225 2804479 R hypothetical protein complement(2804225..2804479) Pseudomonas putida F1 5194443 YP_001267775.1 CDS Pput_2456 NC_009512.1 2804668 2805315 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 2804668..2805315 Pseudomonas putida F1 5194846 YP_001267776.1 CDS Pput_2457 NC_009512.1 2805336 2807183 D TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2805336..2807183 Pseudomonas putida F1 5194847 YP_001267777.1 CDS Pput_2458 NC_009512.1 2807212 2807637 D PFAM: Ion transport 2 domain protein; Ion transport 2 domain-containing protein 2807212..2807637 Pseudomonas putida F1 5194716 YP_001267778.1 CDS Pput_2459 NC_009512.1 2807645 2810020 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; putative phosphoketolase complement(2807645..2810020) Pseudomonas putida F1 5194717 YP_001267779.1 CDS Pput_2460 NC_009512.1 2810350 2810910 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(2810350..2810910) Pseudomonas putida F1 5195122 YP_001267780.1 CDS Pput_2461 NC_009512.1 2811101 2811835 D hypothetical protein 2811101..2811835 Pseudomonas putida F1 5195123 YP_001267781.1 CDS Pput_2462 NC_009512.1 2811804 2812535 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(2811804..2812535) Pseudomonas putida F1 5191110 YP_001267782.1 CDS Pput_2463 NC_009512.1 2812760 2813329 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2812760..2813329 Pseudomonas putida F1 5191111 YP_001267783.1 CDS Pput_2464 NC_009512.1 2813389 2814756 D PFAM: Erythromycin esterase; erythromycin esterase 2813389..2814756 Pseudomonas putida F1 5194338 YP_001267784.1 CDS Pput_2465 NC_009512.1 2814804 2815496 R PFAM: phosphoribosyltransferase; phosphoribosyltransferase complement(2814804..2815496) Pseudomonas putida F1 5194339 YP_001267785.1 CDS Pput_2466 NC_009512.1 2815560 2816204 R hypothetical protein complement(2815560..2816204) Pseudomonas putida F1 5194516 YP_001267786.1 CDS Pput_2467 NC_009512.1 2816225 2817592 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein complement(2816225..2817592) Pseudomonas putida F1 5194517 YP_001267787.1 CDS Pput_2468 NC_009512.1 2817583 2818509 R PFAM: UspA domain protein; UspA domain-containing protein complement(2817583..2818509) Pseudomonas putida F1 5193502 YP_001267788.1 CDS Pput_2469 NC_009512.1 2818692 2819240 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2818692..2819240 Pseudomonas putida F1 5193503 YP_001267789.1 CDS Pput_2470 NC_009512.1 2819270 2820196 R PFAM: UspA domain protein; UspA domain-containing protein complement(2819270..2820196) Pseudomonas putida F1 5192459 YP_001267790.1 CDS Pput_2471 NC_009512.1 2820736 2821557 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2820736..2821557 Pseudomonas putida F1 5192460 YP_001267791.1 CDS Pput_2472 NC_009512.1 2821542 2822780 D hypothetical protein 2821542..2822780 Pseudomonas putida F1 5192300 YP_001267792.1 CDS Pput_2473 NC_009512.1 2822820 2823824 R TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; PaaX family transcriptional regulator complement(2822820..2823824) Pseudomonas putida F1 5192301 YP_001267793.1 CDS Pput_2474 NC_009512.1 2823821 2824420 R TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; phenylacetic acid degradation protein PaaY complement(2823821..2824420) Pseudomonas putida F1 5191250 YP_001267794.1 CDS Pput_2475 NC_009512.1 2824767 2825540 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase-isomerase 2824767..2825540 Pseudomonas putida F1 5191251 YP_001267795.1 CDS Pput_2476 NC_009512.1 2825575 2826366 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2825575..2826366 Pseudomonas putida F1 5193472 YP_001267796.1 CDS Pput_2477 NC_009512.1 2826368 2827885 D converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2826368..2827885 Pseudomonas putida F1 5193473 YP_001267797.1 CDS Pput_2478 NC_009512.1 2827878 2828318 D TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; phenylacetic acid degradation protein PaaD 2827878..2828318 Pseudomonas putida F1 5192182 YP_001267798.1 CDS Pput_2479 NC_009512.1 2828311 2829531 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2828311..2829531 Pseudomonas putida F1 5192183 YP_001267799.1 CDS Pput_2480 NC_009512.1 2829653 2830972 D TIGRFAM: phenylacetate-CoA ligase; phenylacetate-CoA ligase 2829653..2830972 Pseudomonas putida F1 5190528 YP_001267800.1 CDS paaA NC_009512.1 2831199 2832188 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2831199..2832188 Pseudomonas putida F1 5190529 YP_001267801.1 CDS paaB NC_009512.1 2832214 2832495 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2832214..2832495 Pseudomonas putida F1 5190481 YP_001267802.1 CDS Pput_2483 NC_009512.1 2832504 2833262 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaI 2832504..2833262 Pseudomonas putida F1 5190482 YP_001267803.1 CDS Pput_2484 NC_009512.1 2833249 2833782 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; phenylacetate-CoA oxygenase subunit PaaJ 2833249..2833782 Pseudomonas putida F1 5190407 YP_001267804.1 CDS Pput_2485 NC_009512.1 2833798 2834874 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 2833798..2834874 Pseudomonas putida F1 5190408 YP_001267805.1 CDS Pput_2486 NC_009512.1 2835016 2835324 D PFAM: protein of unknown function DUF485; hypothetical protein 2835016..2835324 Pseudomonas putida F1 5195557 YP_001267806.1 CDS Pput_2487 NC_009512.1 2835321 2836883 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2835321..2836883 Pseudomonas putida F1 5195558 YP_001267807.1 CDS Pput_2488 NC_009512.1 2836923 2838155 D PFAM: outer membrane porin; outer membrane porin 2836923..2838155 Pseudomonas putida F1 5191769 YP_001267808.1 CDS Pput_2489 NC_009512.1 2838193 2840247 D catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2838193..2840247 Pseudomonas putida F1 5191770 YP_001267809.1 CDS Pput_2490 NC_009512.1 2840742 2841011 R hypothetical protein complement(2840742..2841011) Pseudomonas putida F1 5191264 YP_001267810.1 CDS Pput_2491 NC_009512.1 2841178 2841387 R hypothetical protein complement(2841178..2841387) Pseudomonas putida F1 5191265 YP_001267811.1 CDS Pput_2492 NC_009512.1 2841623 2842021 D PFAM: NUDIX hydrolase; NUDIX hydrolase 2841623..2842021 Pseudomonas putida F1 5192883 YP_001267812.1 CDS Pput_2493 NC_009512.1 2842023 2842574 R PFAM: peptidase S14, ClpP; peptidase S14, ClpP complement(2842023..2842574) Pseudomonas putida F1 5192884 YP_001267813.1 CDS Pput_2494 NC_009512.1 2842834 2843751 D PFAM: protein of unknown function DUF72; hypothetical protein 2842834..2843751 Pseudomonas putida F1 5195536 YP_001267814.1 CDS Pput_2495 NC_009512.1 2843748 2844521 D PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2843748..2844521 Pseudomonas putida F1 5195537 YP_001267815.1 CDS Pput_2496 NC_009512.1 2844518 2845720 D PFAM: phospholipase D/Transphosphatidylase; cardiolipin synthase 2 2844518..2845720 Pseudomonas putida F1 5191964 YP_001267816.1 CDS Pput_2497 NC_009512.1 2845720 2846673 D hypothetical protein 2845720..2846673 Pseudomonas putida F1 5191965 YP_001267817.1 CDS Pput_2498 NC_009512.1 2846702 2847118 D hypothetical protein 2846702..2847118 Pseudomonas putida F1 5194407 YP_001267818.1 CDS Pput_2499 NC_009512.1 2847209 2847433 R PFAM: metallothionein, family 14; metallothionein family protein complement(2847209..2847433) Pseudomonas putida F1 5194408 YP_001267819.1 CDS Pput_2500 NC_009512.1 2847430 2847894 R hypothetical protein complement(2847430..2847894) Pseudomonas putida F1 5193444 YP_001267820.1 CDS ligD NC_009512.1 2848022 2850523 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2848022..2850523 Pseudomonas putida F1 5193445 YP_001267821.1 CDS Pput_2502 NC_009512.1 2850564 2851607 D hypothetical protein 2850564..2851607 Pseudomonas putida F1 5192449 YP_001267822.1 CDS Pput_2503 NC_009512.1 2851604 2852359 D PFAM: LmbE family protein; LmbE family protein 2851604..2852359 Pseudomonas putida F1 5192450 YP_001267823.1 CDS Pput_2504 NC_009512.1 2852371 2852970 D PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 2852371..2852970 Pseudomonas putida F1 5191773 YP_001267824.1 CDS Pput_2505 NC_009512.1 2852967 2853626 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2852967..2853626 Pseudomonas putida F1 5191774 YP_001267825.1 CDS Pput_2506 NC_009512.1 2853648 2854469 R TIGRFAM: Ku family containing protein; PFAM: Ku domain protein; Ku family containing protein complement(2853648..2854469) Pseudomonas putida F1 5192503 YP_001267826.1 CDS Pput_2507 NC_009512.1 2854555 2855142 R nucleoside phosphorylase-like protein complement(2854555..2855142) Pseudomonas putida F1 5192504 YP_001267827.1 CDS Pput_2508 NC_009512.1 2855199 2856305 R ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase complement(2855199..2856305) Pseudomonas putida F1 5194405 YP_001267828.1 CDS Pput_2509 NC_009512.1 2856312 2857265 R PFAM: methyltransferase small; methyltransferase small complement(2856312..2857265) Pseudomonas putida F1 5194406 YP_001267829.1 CDS Pput_2510 NC_009512.1 2857265 2858596 R hypothetical protein complement(2857265..2858596) Pseudomonas putida F1 5192290 YP_001267830.1 CDS Pput_2511 NC_009512.1 2858871 2859053 R hypothetical protein complement(2858871..2859053) Pseudomonas putida F1 5192291 YP_001267831.1 CDS Pput_2512 NC_009512.1 2859201 2860484 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2859201..2860484) Pseudomonas putida F1 5191236 YP_001267832.1 CDS Pput_2513 NC_009512.1 2860489 2861400 R PFAM: aldo/keto reductase; aldo/keto reductase complement(2860489..2861400) Pseudomonas putida F1 5191237 YP_001267833.1 CDS Pput_2514 NC_009512.1 2861490 2862353 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; Dyp-type peroxidase family protein complement(2861490..2862353) Pseudomonas putida F1 5191827 YP_001267834.1 CDS Pput_2515 NC_009512.1 2862538 2863431 D PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 2862538..2863431 Pseudomonas putida F1 5191828 YP_001267835.1 CDS Pput_2516 NC_009512.1 2863466 2863933 R PFAM: Carotene hydroxylase; carotene hydroxylase complement(2863466..2863933) Pseudomonas putida F1 5191117 YP_001267836.1 CDS Pput_2517 NC_009512.1 2864332 2865045 D PFAM: MgtC/SapB transporter; MgtC/SapB transporter 2864332..2865045 Pseudomonas putida F1 5191118 YP_001267837.1 CDS Pput_2518 NC_009512.1 2865063 2865566 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2865063..2865566 Pseudomonas putida F1 5191702 YP_001267838.1 CDS Pput_2519 NC_009512.1 2865610 2867178 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(2865610..2867178) Pseudomonas putida F1 5191703 YP_001267839.1 CDS Pput_2520 NC_009512.1 2867332 2867832 D hypothetical protein 2867332..2867832 Pseudomonas putida F1 5194047 YP_001267840.1 CDS Pput_2521 NC_009512.1 2867841 2868092 D hypothetical protein 2867841..2868092 Pseudomonas putida F1 5194048 YP_001267841.1 CDS Pput_2522 NC_009512.1 2868215 2869201 R hypothetical protein complement(2868215..2869201) Pseudomonas putida F1 5192868 YP_001267842.1 CDS Pput_2523 NC_009512.1 2869437 2870909 D hypothetical protein 2869437..2870909 Pseudomonas putida F1 5192869 YP_001267843.1 CDS Pput_2524 NC_009512.1 2871069 2871674 D PFAM: YheO domain protein; YheO domain-containing protein 2871069..2871674 Pseudomonas putida F1 5191731 YP_001267844.1 CDS Pput_2525 NC_009512.1 2871794 2872795 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 2871794..2872795 Pseudomonas putida F1 5191732 YP_001267845.1 CDS Pput_2526 NC_009512.1 2872792 2873739 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2872792..2873739 Pseudomonas putida F1 5193699 YP_001267846.1 CDS Pput_2527 NC_009512.1 2873753 2874994 R PFAM: amidohydrolase; Amidohydrolase 3; N-isopropylammelide isopropylaminohydrolase complement(2873753..2874994) Pseudomonas putida F1 5193700 YP_001267847.1 CDS Pput_2528 NC_009512.1 2874999 2876216 R PFAM: purine catabolism PurC domain protein; PucR family transcriptional regulator complement(2874999..2876216) Pseudomonas putida F1 5193146 YP_001267848.1 CDS codB NC_009512.1 2876213 2877478 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine permease complement(2876213..2877478) Pseudomonas putida F1 5193147 YP_001267849.1 CDS Pput_2530 NC_009512.1 2877707 2878372 R PFAM: TENA/THI-4 domain protein; TenA family transcriptional regulator complement(2877707..2878372) Pseudomonas putida F1 5191618 YP_001267850.1 CDS Pput_2531 NC_009512.1 2878369 2879112 R PFAM: TENA/THI-4 domain protein; TenA family transcriptional regulator complement(2878369..2879112) Pseudomonas putida F1 5191619 YP_001267851.1 CDS Pput_2532 NC_009512.1 2879451 2882846 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 2 2879451..2882846 Pseudomonas putida F1 5194890 YP_001267852.1 CDS Pput_2533 NC_009512.1 2882902 2883885 D PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 2882902..2883885 Pseudomonas putida F1 5194891 YP_001267853.1 CDS Pput_2534 NC_009512.1 2883967 2886294 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2883967..2886294 Pseudomonas putida F1 5192147 YP_001267854.1 CDS Pput_2535 NC_009512.1 2886355 2887335 D PFAM: phage integrase family protein; phage integrase family protein 2886355..2887335 Pseudomonas putida F1 5192148 YP_001267855.1 CDS Pput_2536 NC_009512.1 2887325 2888365 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(2887325..2888365) Pseudomonas putida F1 5194010 YP_001267856.1 CDS Pput_2537 NC_009512.1 2888493 2889392 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2888493..2889392 Pseudomonas putida F1 5194011 YP_001267857.1 CDS Pput_2538 NC_009512.1 2889412 2890551 R PFAM: glycerate kinase; glycerate kinase complement(2889412..2890551) Pseudomonas putida F1 5192407 YP_001267858.1 CDS Pput_2539 NC_009512.1 2890693 2891790 R PFAM: sugar diacid recognition domain protein; transcriptional regulator CdaR complement(2890693..2891790) Pseudomonas putida F1 5192408 YP_001267859.1 CDS Pput_2540 NC_009512.1 2891954 2893282 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2891954..2893282 Pseudomonas putida F1 5191572 YP_001267860.1 CDS Pput_2541 NC_009512.1 2893458 2894978 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2893458..2894978 Pseudomonas putida F1 5191573 YP_001267861.1 CDS Pput_2542 NC_009512.1 2895051 2896061 D PFAM: aldo/keto reductase; aldo/keto reductase 2895051..2896061 Pseudomonas putida F1 5193836 YP_001267862.1 CDS Pput_2543 NC_009512.1 2896157 2897254 D FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 2896157..2897254 Pseudomonas putida F1 5193837 YP_001267863.1 CDS Pput_2544 NC_009512.1 2897298 2898278 R PFAM: luciferase family protein; luciferase family protein complement(2897298..2898278) Pseudomonas putida F1 5192706 YP_001267864.1 CDS Pput_2545 NC_009512.1 2898379 2899290 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2898379..2899290) Pseudomonas putida F1 5192707 YP_001267865.1 CDS Pput_2546 NC_009512.1 2899359 2900438 R PFAM: membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase complement(2899359..2900438) Pseudomonas putida F1 5191570 YP_001267866.1 CDS Pput_2547 NC_009512.1 2900513 2901763 R PFAM: outer membrane porin; outer membrane porin complement(2900513..2901763) Pseudomonas putida F1 5191571 YP_001267867.1 CDS Pput_2548 NC_009512.1 2901818 2903017 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; benzoate transporter complement(2901818..2903017) Pseudomonas putida F1 5191979 YP_001267868.1 CDS Pput_2549 NC_009512.1 2903163 2904077 R TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; catechol 1,2-dioxygenase complement(2903163..2904077) Pseudomonas putida F1 5191980 YP_001267869.1 CDS Pput_2550 NC_009512.1 2904107 2905435 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2904107..2905435) Pseudomonas putida F1 5191962 YP_001267870.1 CDS benD NC_009512.1 2905493 2906254 R catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase complement(2905493..2906254) Pseudomonas putida F1 5191963 YP_001267871.1 CDS Pput_2552 NC_009512.1 2906448 2907458 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(2906448..2907458) Pseudomonas putida F1 5191779 YP_001267872.1 CDS Pput_2553 NC_009512.1 2907531 2908016 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; benzoate 1,2-dioxygenase complement(2907531..2908016) Pseudomonas putida F1 5191780 YP_001267873.1 CDS Pput_2554 NC_009512.1 2908013 2909371 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(2908013..2909371) Pseudomonas putida F1 5191920 YP_001267874.1 CDS Pput_2555 NC_009512.1 2909531 2910487 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator complement(2909531..2910487) Pseudomonas putida F1 5191921 YP_001267875.1 CDS Pput_2556 NC_009512.1 2910787 2911518 R hypothetical protein complement(2910787..2911518) Pseudomonas putida F1 5195189 YP_001267876.1 CDS Pput_2557 NC_009512.1 2911705 2912496 R TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase complement(2911705..2912496) Pseudomonas putida F1 5195190 YP_001267877.1 CDS Pput_2558 NC_009512.1 2912622 2913512 D PFAM: UspA domain protein; UspA domain-containing protein 2912622..2913512 Pseudomonas putida F1 5191300 YP_001267878.1 CDS Pput_2559 NC_009512.1 2913769 2915895 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2913769..2915895 Pseudomonas putida F1 5191301 YP_001267879.1 CDS Pput_2560 NC_009512.1 2915927 2916448 R hypothetical protein complement(2915927..2916448) Pseudomonas putida F1 5191681 YP_001267880.1 CDS Pput_2561 NC_009512.1 2916701 2917144 R hypothetical protein complement(2916701..2917144) Pseudomonas putida F1 5191682 YP_001267881.1 CDS Pput_2562 NC_009512.1 2917271 2918137 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2917271..2918137) Pseudomonas putida F1 5194397 YP_001267882.1 CDS Pput_2563 NC_009512.1 2918245 2919630 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2918245..2919630 Pseudomonas putida F1 5194398 YP_001267883.1 CDS Pput_2564 NC_009512.1 2919668 2921578 R hypothetical protein complement(2919668..2921578) Pseudomonas putida F1 5194546 YP_001267884.1 CDS Pput_2565 NC_009512.1 2921765 2922664 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2921765..2922664) Pseudomonas putida F1 5194547 YP_001267885.1 CDS Pput_2566 NC_009512.1 2922848 2924206 D PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 2922848..2924206 Pseudomonas putida F1 5191330 YP_001267886.1 CDS Pput_2567 NC_009512.1 2924288 2925376 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2924288..2925376 Pseudomonas putida F1 5191331 YP_001267887.1 CDS Pput_2568 NC_009512.1 2925390 2926685 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2925390..2926685 Pseudomonas putida F1 5192221 YP_001267888.1 CDS Pput_2569 NC_009512.1 2926826 2927503 D hypothetical protein 2926826..2927503 Pseudomonas putida F1 5192222 YP_001267889.1 CDS Pput_2570 NC_009512.1 2927573 2928949 R TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(2927573..2928949) Pseudomonas putida F1 5191878 YP_001267890.1 CDS Pput_2571 NC_009512.1 2929096 2930037 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2929096..2930037 Pseudomonas putida F1 5191879 YP_001267891.1 CDS Pput_2572 NC_009512.1 2930071 2931492 R PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase complement(2930071..2931492) Pseudomonas putida F1 5194777 YP_001267892.1 CDS Pput_2573 NC_009512.1 2931670 2932422 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(2931670..2932422) Pseudomonas putida F1 5194778 YP_001267893.1 CDS Pput_2574 NC_009512.1 2932422 2933609 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(2932422..2933609) Pseudomonas putida F1 5194958 YP_001267894.1 CDS Pput_2575 NC_009512.1 2933606 2934841 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(2933606..2934841) Pseudomonas putida F1 5194959 YP_001267895.1 CDS Pput_2576 NC_009512.1 2934858 2935862 R PFAM: protein of unknown function DUF535; hypothetical protein complement(2934858..2935862) Pseudomonas putida F1 5191306 YP_001267896.1 CDS Pput_2577 NC_009512.1 2935872 2936849 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(2935872..2936849) Pseudomonas putida F1 5191307 YP_001267897.1 CDS Pput_2578 NC_009512.1 2936855 2937379 R Serine acetyltransferase-like protein complement(2936855..2937379) Pseudomonas putida F1 5193161 YP_001267898.1 CDS Pput_2579 NC_009512.1 2937388 2938344 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(2937388..2938344) Pseudomonas putida F1 5193162 YP_001267899.1 CDS Pput_2580 NC_009512.1 2938346 2939032 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(2938346..2939032) Pseudomonas putida F1 5195105 YP_001267900.1 CDS Pput_2581 NC_009512.1 2939058 2940524 R PFAM: GMC oxidoreductase; GMC oxidoreductase complement(2939058..2940524) Pseudomonas putida F1 5195106 YP_001267901.1 CDS Pput_2582 NC_009512.1 2940521 2940736 R hypothetical protein complement(2940521..2940736) Pseudomonas putida F1 5194941 YP_001267902.1 CDS Pput_2583 NC_009512.1 2940761 2942137 R PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2940761..2942137) Pseudomonas putida F1 5194942 YP_001267903.1 CDS Pput_2584 NC_009512.1 2942233 2943759 D hypothetical protein 2942233..2943759 Pseudomonas putida F1 5193120 YP_001267904.1 CDS Pput_2585 NC_009512.1 2943765 2946365 D hypothetical protein 2943765..2946365 Pseudomonas putida F1 5193121 YP_001267905.1 CDS Pput_2586 NC_009512.1 2946471 2947436 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; UDP-glucose 4-epimerase 2946471..2947436 Pseudomonas putida F1 5191164 YP_001267906.1 CDS Pput_2587 NC_009512.1 2947500 2948306 R non-specific protein-tyrosine kinase complement(2947500..2948306) Pseudomonas putida F1 5191165 YP_001267907.1 CDS Pput_2588 NC_009512.1 2948318 2949880 R PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein complement(2948318..2949880) Pseudomonas putida F1 5194793 YP_001267908.1 CDS Pput_2589 NC_009512.1 2949900 2951015 R hypothetical protein complement(2949900..2951015) Pseudomonas putida F1 5194794 YP_001267909.1 CDS Pput_2590 NC_009512.1 2951040 2951597 R PFAM: polysaccharide export protein; polysaccharide export protein complement(2951040..2951597) Pseudomonas putida F1 5193390 YP_001267910.1 CDS Pput_2591 NC_009512.1 2952285 2952827 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator complement(2952285..2952827) Pseudomonas putida F1 5193391 YP_001267911.1 CDS Pput_2592 NC_009512.1 2952904 2954433 R PFAM: short chain fatty acid transporter; short chain fatty acid transporter complement(2952904..2954433) Pseudomonas putida F1 5193128 YP_001267912.1 CDS Pput_2593 NC_009512.1 2954476 2955132 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2954476..2955132) Pseudomonas putida F1 5193129 YP_001267913.1 CDS Pput_2594 NC_009512.1 2955168 2955866 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2955168..2955866) Pseudomonas putida F1 5194510 YP_001267914.1 CDS Pput_2595 NC_009512.1 2956007 2956912 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2956007..2956912 Pseudomonas putida F1 5194511 YP_001267915.1 CDS Pput_2596 NC_009512.1 2956900 2957721 D PFAM: aldo/keto reductase; aldo/keto reductase 2956900..2957721 Pseudomonas putida F1 5191759 YP_001267916.1 CDS Pput_2597 NC_009512.1 2957999 2958949 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 complement(2957999..2958949) Pseudomonas putida F1 5191760 YP_001267917.1 CDS dnaE2 NC_009512.1 2959484 2962564 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase complement(2959484..2962564) Pseudomonas putida F1 5193212 YP_001267918.1 CDS Pput_2599 NC_009512.1 2962561 2963979 R hypothetical protein complement(2962561..2963979) Pseudomonas putida F1 5193213 YP_001267919.1 CDS Pput_2600 NC_009512.1 2963986 2964606 R hypothetical protein complement(2963986..2964606) Pseudomonas putida F1 5192544 YP_001267920.1 CDS Pput_2601 NC_009512.1 2964606 2965223 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2964606..2965223) Pseudomonas putida F1 5192545 YP_001267921.1 CDS Pput_2602 NC_009512.1 2965315 2965998 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2965315..2965998 Pseudomonas putida F1 5192702 YP_001267922.1 CDS Pput_2603 NC_009512.1 2965995 2967380 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2965995..2967380) Pseudomonas putida F1 5192703 YP_001267923.1 CDS Pput_2604 NC_009512.1 2967425 2967751 R PFAM: NIPSNAP family containing protein; NIPSNAP family protein complement(2967425..2967751) Pseudomonas putida F1 5191383 YP_001267924.1 CDS Pput_2605 NC_009512.1 2967751 2969466 R proposed role in polysaccahride synthesis; putative succinate dehydrogenase complement(2967751..2969466) Pseudomonas putida F1 5191384 YP_001267925.1 CDS Pput_2606 NC_009512.1 2969463 2970290 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(2969463..2970290) Pseudomonas putida F1 5194401 YP_001267926.1 CDS Pput_2607 NC_009512.1 2970467 2971339 D PFAM: helix-turn-helix- domain containing protein, AraC type; Cupin 2, conserved barrel domain protein; helix-turn-helix domain-containing protein 2970467..2971339 Pseudomonas putida F1 5194402 YP_001267927.1 CDS Pput_2608 NC_009512.1 2971417 2972190 R PFAM: regulatory protein, IclR; regulatory protein IclR complement(2971417..2972190) Pseudomonas putida F1 5194253 YP_001267928.1 CDS Pput_2609 NC_009512.1 2972255 2973712 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2972255..2973712) Pseudomonas putida F1 5194254 YP_001267929.1 CDS Pput_2610 NC_009512.1 2973709 2975019 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2973709..2975019) Pseudomonas putida F1 5192092 YP_001267930.1 CDS Pput_2611 NC_009512.1 2975103 2976278 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(2975103..2976278) Pseudomonas putida F1 5192093 YP_001267931.1 CDS Pput_2612 NC_009512.1 2976325 2977818 R TIGRFAM: YD repeat protein; YD repeat-containing protein complement(2976325..2977818) Pseudomonas putida F1 5190290 YP_001267932.1 CDS Pput_2613 NC_009512.1 2978320 2980920 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat-containing protein complement(2978320..2980920) Pseudomonas putida F1 5190291 YP_001267933.1 CDS Pput_2614 NC_009512.1 2980933 2981529 R hypothetical protein complement(2980933..2981529) Pseudomonas putida F1 5192852 YP_001267934.1 CDS Pput_2615 NC_009512.1 2981534 2985736 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; YD repeat-containing protein complement(2981534..2985736) Pseudomonas putida F1 5192853 YP_001267935.1 CDS Pput_2616 NC_009512.1 2985743 2986210 R PFAM: Domain of unknown function DUF1795; hypothetical protein complement(2985743..2986210) Pseudomonas putida F1 5194658 YP_001267936.1 CDS Pput_2617 NC_009512.1 2986245 2986829 R hypothetical protein complement(2986245..2986829) Pseudomonas putida F1 5194659 YP_001267937.1 CDS Pput_2618 NC_009512.1 2986840 2988696 R PFAM: Rhs element Vgr protein; Rhs element Vgr protein complement(2986840..2988696) Pseudomonas putida F1 5193608 YP_001267938.1 CDS Pput_2620 NC_009512.1 2989609 2990160 D hypothetical protein 2989609..2990160 Pseudomonas putida F1 5192471 YP_001267939.1 CDS Pput_2621 NC_009512.1 2990739 2991503 D hypothetical protein 2990739..2991503 Pseudomonas putida F1 5190824 YP_001267940.1 CDS Pput_2622 NC_009512.1 2991568 2992107 D PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 2991568..2992107 Pseudomonas putida F1 5190825 YP_001267941.1 CDS Pput_2623 NC_009512.1 2992122 2993624 D PFAM: protein of unknown function DUF877; hypothetical protein 2992122..2993624 Pseudomonas putida F1 5190308 YP_001267942.1 CDS Pput_2624 NC_009512.1 2993651 2994133 D PFAM: GPW/gp25 family protein; GPW/gp25 family protein 2993651..2994133 Pseudomonas putida F1 5190309 YP_001267943.1 CDS Pput_2625 NC_009512.1 2994133 2995953 D PFAM: protein of unknown function DUF879; hypothetical protein 2994133..2995953 Pseudomonas putida F1 5191564 YP_001267944.1 CDS Pput_2626 NC_009512.1 2995917 2996987 D PFAM: protein of unknown function DUF1305; hypothetical protein 2995917..2996987 Pseudomonas putida F1 5191565 YP_001267945.1 CDS Pput_2627 NC_009512.1 2996984 2999581 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2996984..2999581 Pseudomonas putida F1 5195414 YP_001267946.1 CDS Pput_2628 NC_009512.1 2999606 3000328 D hypothetical protein 2999606..3000328 Pseudomonas putida F1 5195415 YP_001267947.1 CDS Pput_2629 NC_009512.1 3000325 3001668 D PFAM: protein of unknown function DUF876; hypothetical protein 3000325..3001668 Pseudomonas putida F1 5194029 YP_001267948.1 CDS Pput_2630 NC_009512.1 3001665 3002381 D hypothetical protein 3001665..3002381 Pseudomonas putida F1 5194030 YP_001267949.1 CDS Pput_2631 NC_009512.1 3002412 3006215 D PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 3002412..3006215 Pseudomonas putida F1 5193199 YP_001267950.1 CDS Pput_2632 NC_009512.1 3006212 3007120 D hypothetical protein 3006212..3007120 Pseudomonas putida F1 5193200 YP_001267951.1 CDS Pput_2633 NC_009512.1 3007117 3009612 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3007117..3009612 Pseudomonas putida F1 5195358 YP_001267952.1 CDS Pput_2634 NC_009512.1 3009756 3010274 D PFAM: protein of unknown function DUF796; hypothetical protein 3009756..3010274 Pseudomonas putida F1 5195359 YP_001267953.1 CDS Pput_2635 NC_009512.1 3010370 3011455 D PFAM: ImpA domain protein; ImpA domain-containing protein 3010370..3011455 Pseudomonas putida F1 5195507 YP_001267954.1 CDS Pput_2636 NC_009512.1 3011623 3014139 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; excinuclease ABC subunit A 3011623..3014139 Pseudomonas putida F1 5195508 YP_001267955.1 CDS Pput_2637 NC_009512.1 3014224 3015873 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3014224..3015873 Pseudomonas putida F1 5195039 YP_001267956.1 CDS Pput_2638 NC_009512.1 3015870 3017003 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 3015870..3017003 Pseudomonas putida F1 5195040 YP_001267957.1 CDS Pput_2639 NC_009512.1 3017107 3017709 D hypothetical protein 3017107..3017709 Pseudomonas putida F1 5194120 YP_001267958.1 CDS Pput_2640 NC_009512.1 3017746 3018621 R PFAM: Auxin Efflux Carrier; auxin efflux carrier complement(3017746..3018621) Pseudomonas putida F1 5194121 YP_001267959.1 CDS Pput_2641 NC_009512.1 3019049 3020347 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3019049..3020347 Pseudomonas putida F1 5192265 YP_001267960.1 CDS Pput_2642 NC_009512.1 3020429 3020737 D hypothetical protein 3020429..3020737 Pseudomonas putida F1 5192266 YP_001267961.1 CDS Pput_2643 NC_009512.1 3020787 3021338 D PFAM: PEBP family protein; PEBP family protein 3020787..3021338 Pseudomonas putida F1 5191525 YP_001267962.1 CDS Pput_2644 NC_009512.1 3021893 3022954 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3021893..3022954 Pseudomonas putida F1 5191526 YP_001267963.1 CDS Pput_2645 NC_009512.1 3023035 3023316 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3023035..3023316 Pseudomonas putida F1 5192231 YP_001267964.1 CDS Pput_2646 NC_009512.1 3023459 3025258 D PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 3023459..3025258 Pseudomonas putida F1 5192232 YP_001267965.1 CDS Pput_2647 NC_009512.1 3025255 3026313 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3025255..3026313 Pseudomonas putida F1 5195376 YP_001267966.1 CDS Pput_2648 NC_009512.1 3026313 3027329 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3026313..3027329 Pseudomonas putida F1 5195377 YP_001267967.1 CDS Pput_2649 NC_009512.1 3027389 3028771 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 3027389..3028771 Pseudomonas putida F1 5194330 YP_001267968.1 CDS Pput_2650 NC_009512.1 3028996 3030387 D PFAM: Citrate transporter; citrate transporter 3028996..3030387 Pseudomonas putida F1 5194331 YP_001267969.1 CDS Pput_2651 NC_009512.1 3030398 3031168 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3030398..3031168 Pseudomonas putida F1 5193657 YP_001267970.1 CDS Pput_2652 NC_009512.1 3031224 3031703 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3031224..3031703 Pseudomonas putida F1 5193658 YP_001267971.1 CDS Pput_2653 NC_009512.1 3031795 3033747 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3031795..3033747 Pseudomonas putida F1 5191160 YP_001267972.1 CDS Pput_2654 NC_009512.1 3033835 3034110 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3033835..3034110 Pseudomonas putida F1 5191161 YP_001267973.1 CDS Pput_2655 NC_009512.1 3034238 3036697 D TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Pertactin; Autotransporter beta- domain protein; outer membrane autotransporter 3034238..3036697 Pseudomonas putida F1 5191578 YP_001267974.1 CDS Pput_2656 NC_009512.1 3036694 3037317 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(3036694..3037317) Pseudomonas putida F1 5191579 YP_001267975.1 CDS Pput_2657 NC_009512.1 3037449 3038258 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3037449..3038258 Pseudomonas putida F1 5195497 YP_001267976.1 CDS Pput_2658 NC_009512.1 3038341 3038955 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3038341..3038955 Pseudomonas putida F1 5195498 YP_001267977.1 CDS Pput_2659 NC_009512.1 3038903 3039628 R PFAM: metallophosphoesterase; metallophosphoesterase complement(3038903..3039628) Pseudomonas putida F1 5194385 YP_001267978.1 CDS Pput_2660 NC_009512.1 3039843 3040586 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3039843..3040586 Pseudomonas putida F1 5194386 YP_001267979.1 CDS Pput_2661 NC_009512.1 3040583 3040825 D hypothetical protein 3040583..3040825 Pseudomonas putida F1 5193739 YP_001267980.1 CDS Pput_2662 NC_009512.1 3040830 3041330 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase, ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(3040830..3041330) Pseudomonas putida F1 5193740 YP_001267981.1 CDS Pput_2663 NC_009512.1 3041401 3042210 R hypothetical protein complement(3041401..3042210) Pseudomonas putida F1 5193041 YP_001267982.1 CDS Pput_2664 NC_009512.1 3042408 3044048 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3042408..3044048) Pseudomonas putida F1 5193042 YP_001267983.1 CDS Pput_2665 NC_009512.1 3044060 3045838 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3044060..3045838) Pseudomonas putida F1 5191374 YP_001267984.1 CDS Pput_2666 NC_009512.1 3045831 3048296 R RND efflux transporter complement(3045831..3048296) Pseudomonas putida F1 5191375 YP_001267985.1 CDS Pput_2667 NC_009512.1 3048312 3049307 R hypothetical protein complement(3048312..3049307) Pseudomonas putida F1 5191272 YP_001267986.1 CDS Pput_2668 NC_009512.1 3049329 3050687 R PFAM: protein of unknown function DUF1329; hypothetical protein complement(3049329..3050687) Pseudomonas putida F1 5191273 YP_001267987.1 CDS Pput_2669 NC_009512.1 3050726 3052681 R hypothetical protein complement(3050726..3052681) Pseudomonas putida F1 5193669 YP_001267988.1 CDS Pput_2670 NC_009512.1 3052759 3053334 R PFAM: protein of unknown function DUF1234; hypothetical protein complement(3052759..3053334) Pseudomonas putida F1 5193670 YP_001267989.1 CDS Pput_2671 NC_009512.1 3053582 3054613 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 3053582..3054613 Pseudomonas putida F1 5191614 YP_001267990.1 CDS Pput_2672 NC_009512.1 3054576 3054908 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(3054576..3054908) Pseudomonas putida F1 5191615 YP_001267991.1 CDS Pput_2673 NC_009512.1 3054905 3055558 R PFAM: DSBA oxidoreductase; DSBA oxidoreductase complement(3054905..3055558) Pseudomonas putida F1 5194457 YP_001267992.1 CDS Pput_2674 NC_009512.1 3055563 3056843 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3055563..3056843) Pseudomonas putida F1 5194458 YP_001267993.1 CDS Pput_2675 NC_009512.1 3056971 3058023 R PFAM: protein of unknown function DUF849; hypothetical protein complement(3056971..3058023) Pseudomonas putida F1 5195350 YP_001267994.1 CDS Pput_2676 NC_009512.1 3058078 3058926 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine dioxygenase complement(3058078..3058926) Pseudomonas putida F1 5195351 YP_001267995.1 CDS Pput_2677 NC_009512.1 3058940 3059920 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(3058940..3059920) Pseudomonas putida F1 5195412 YP_001267996.1 CDS Pput_2678 NC_009512.1 3060149 3060355 D hypothetical protein 3060149..3060355 Pseudomonas putida F1 5195413 YP_001267997.1 CDS Pput_2679 NC_009512.1 3060398 3060757 R hypothetical protein complement(3060398..3060757) Pseudomonas putida F1 5191944 YP_001267998.1 CDS Pput_2680 NC_009512.1 3060925 3061125 D hypothetical protein 3060925..3061125 Pseudomonas putida F1 5191945 YP_001267999.1 CDS Pput_2681 NC_009512.1 3061349 3061684 R hypothetical protein complement(3061349..3061684) Pseudomonas putida F1 5194870 YP_001268000.1 CDS Pput_2682 NC_009512.1 3061855 3062304 R hypothetical protein complement(3061855..3062304) Pseudomonas putida F1 5194871 YP_001268001.1 CDS Pput_2683 NC_009512.1 3062420 3062518 R hypothetical protein complement(3062420..3062518) Pseudomonas putida F1 5195485 YP_001268002.1 CDS Pput_2684 NC_009512.1 3062627 3062914 R hypothetical protein complement(3062627..3062914) Pseudomonas putida F1 5195486 YP_001268003.1 CDS Pput_2685 NC_009512.1 3063130 3063657 D hypothetical protein 3063130..3063657 Pseudomonas putida F1 5194372 YP_001268004.1 CDS Pput_2686 NC_009512.1 3063701 3064309 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3063701..3064309 Pseudomonas putida F1 5194373 YP_001268005.1 CDS Pput_2687 NC_009512.1 3064306 3064998 D hypothetical protein 3064306..3064998 Pseudomonas putida F1 5191679 YP_001268006.1 CDS Pput_2688 NC_009512.1 3065052 3065309 R hypothetical protein complement(3065052..3065309) Pseudomonas putida F1 5191680 YP_001268007.1 CDS Pput_2689 NC_009512.1 3065700 3067097 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3065700..3067097) Pseudomonas putida F1 5192263 YP_001268008.1 CDS Pput_2690 NC_009512.1 3067238 3067675 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(3067238..3067675) Pseudomonas putida F1 5192264 YP_001268009.1 CDS Pput_2691 NC_009512.1 3067680 3068498 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase complement(3067680..3068498) Pseudomonas putida F1 5193897 YP_001268010.1 CDS Pput_2692 NC_009512.1 3068495 3069727 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3068495..3069727) Pseudomonas putida F1 5193898 YP_001268011.1 CDS Pput_2693 NC_009512.1 3069724 3070179 R PFAM: MaoC domain protein dehydratase; dehydratase complement(3069724..3070179) Pseudomonas putida F1 5194532 YP_001268012.1 CDS Pput_2694 NC_009512.1 3070176 3070574 R hypothetical protein complement(3070176..3070574) Pseudomonas putida F1 5194533 YP_001268013.1 CDS Pput_2695 NC_009512.1 3070571 3071518 R TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(3070571..3071518) Pseudomonas putida F1 5190820 YP_001268014.1 CDS Pput_2696 NC_009512.1 3071579 3072511 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3071579..3072511 Pseudomonas putida F1 5190821 YP_001268015.1 CDS Pput_2697 NC_009512.1 3072654 3074657 D hypothetical protein 3072654..3074657 Pseudomonas putida F1 5192343 YP_001268016.1 CDS Pput_2698 NC_009512.1 3074854 3075615 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(3074854..3075615) Pseudomonas putida F1 5192344 YP_001268017.1 CDS Pput_2699 NC_009512.1 3076035 3077291 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(3076035..3077291) Pseudomonas putida F1 5195245 YP_001268018.1 CDS Pput_2700 NC_009512.1 3077647 3078396 D PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 3077647..3078396 Pseudomonas putida F1 5195246 YP_001268019.1 CDS Pput_2701 NC_009512.1 3078511 3079437 D hypothetical protein 3078511..3079437 Pseudomonas putida F1 5193416 YP_001268020.1 CDS Pput_2702 NC_009512.1 3079453 3079932 R PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator complement(3079453..3079932) Pseudomonas putida F1 5193417 YP_001268021.1 CDS Pput_2703 NC_009512.1 3080070 3080864 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(3080070..3080864) Pseudomonas putida F1 5195382 YP_001268022.1 CDS Pput_2704 NC_009512.1 3080911 3081924 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(3080911..3081924) Pseudomonas putida F1 5195383 YP_001268023.1 CDS Pput_2705 NC_009512.1 3082024 3082467 D PFAM: helix-turn-helix, HxlR type; HxlR family transcriptional regulator 3082024..3082467 Pseudomonas putida F1 5192762 YP_001268024.1 CDS Pput_2706 NC_009512.1 3082598 3083479 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3082598..3083479) Pseudomonas putida F1 5192763 YP_001268025.1 CDS Pput_2707 NC_009512.1 3083789 3084817 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KR; NAD-dependent epimerase/dehydratase 3083789..3084817 Pseudomonas putida F1 5192204 YP_001268026.1 CDS Pput_2708 NC_009512.1 3085119 3085634 D PFAM: protein of unknown function UPF0157; hypothetical protein 3085119..3085634 Pseudomonas putida F1 5192205 YP_001268027.1 CDS Pput_2709 NC_009512.1 3085631 3085846 D hypothetical protein 3085631..3085846 Pseudomonas putida F1 5192419 YP_001268028.1 CDS Pput_2710 NC_009512.1 3085865 3086866 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(3085865..3086866) Pseudomonas putida F1 5192420 YP_001268029.1 CDS Pput_2711 NC_009512.1 3086974 3087852 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3086974..3087852 Pseudomonas putida F1 5190649 YP_001268030.1 CDS Pput_2712 NC_009512.1 3087915 3088736 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(3087915..3088736) Pseudomonas putida F1 5190650 YP_001268031.1 CDS Pput_2713 NC_009512.1 3088866 3089384 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 3088866..3089384 Pseudomonas putida F1 5190513 YP_001268032.1 CDS Pput_2714 NC_009512.1 3089398 3089652 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 3089398..3089652 Pseudomonas putida F1 5190514 YP_001268033.1 CDS Pput_2715 NC_009512.1 3089744 3090838 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3089744..3090838) Pseudomonas putida F1 5192060 YP_001268034.1 CDS Pput_2716 NC_009512.1 3090933 3092513 D PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; RimK domain-containing protein ATP-grasp 3090933..3092513 Pseudomonas putida F1 5192061 YP_001268035.1 CDS Pput_2717 NC_009512.1 3092517 3093428 D PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein 3092517..3093428 Pseudomonas putida F1 5191470 YP_001268036.1 CDS Pput_2718 NC_009512.1 3093738 3094124 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3093738..3094124) Pseudomonas putida F1 5191471 YP_001268037.1 CDS Pput_2719 NC_009512.1 3094243 3095250 R TIGRFAM: Alcohol dehydrogenase. zinc-binding type 1; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; zinc-binding alcohol dehydrogenase complement(3094243..3095250) Pseudomonas putida F1 5193777 YP_001268038.1 CDS Pput_2720 NC_009512.1 3095356 3096246 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3095356..3096246 Pseudomonas putida F1 5193778 YP_001268039.1 CDS Pput_2721 NC_009512.1 3096359 3096943 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3096359..3096943 Pseudomonas putida F1 5194578 YP_001268040.1 CDS Pput_2722 NC_009512.1 3096991 3097467 D PFAM: protein of unknown function DUF1348; hypothetical protein 3096991..3097467 Pseudomonas putida F1 5194579 YP_001268041.1 CDS Pput_2723 NC_009512.1 3097544 3098485 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(3097544..3098485) Pseudomonas putida F1 5192022 YP_001268042.1 CDS Pput_2724 NC_009512.1 3099015 3100073 D phenylacetaldoxime dehydratase 3099015..3100073 Pseudomonas putida F1 5192023 YP_001268043.1 CDS Pput_2725 NC_009512.1 3100156 3101022 D meta-pathway phenol degradation-like protein 3100156..3101022 Pseudomonas putida F1 5191960 YP_001268044.1 CDS Pput_2726 NC_009512.1 3101076 3101600 D PFAM: globin; globin 3101076..3101600 Pseudomonas putida F1 5191961 YP_001268045.1 CDS Pput_2727 NC_009512.1 3101790 3103304 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3101790..3103304 Pseudomonas putida F1 5193292 YP_001268046.1 CDS Pput_2728 NC_009512.1 3103393 3103974 D TIGRFAM: nitrile hydratase, alpha subunit; PFAM: Nitrile hydratase alpha chain; nitrile hydratase subunit alpha 3103393..3103974 Pseudomonas putida F1 5193293 YP_001268047.1 CDS Pput_2729 NC_009512.1 3104016 3104678 D PFAM: nitrile hydratase, beta subunit; nitrile hydratase 3104016..3104678 Pseudomonas putida F1 5194488 YP_001268048.1 CDS Pput_2730 NC_009512.1 3104675 3105937 D PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 3104675..3105937 Pseudomonas putida F1 5194489 YP_001268049.1 CDS Pput_2731 NC_009512.1 3105951 3107243 D PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 3105951..3107243 Pseudomonas putida F1 5195509 YP_001268050.1 CDS Pput_2732 NC_009512.1 3107304 3108173 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(3107304..3108173) Pseudomonas putida F1 5195510 YP_001268051.1 CDS Pput_2733 NC_009512.1 3108295 3109677 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3108295..3109677 Pseudomonas putida F1 5191371 YP_001268052.1 CDS Pput_2734 NC_009512.1 3109806 3111086 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(3109806..3111086) Pseudomonas putida F1 5191372 YP_001268053.1 CDS Pput_2735 NC_009512.1 3111137 3111796 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(3111137..3111796) Pseudomonas putida F1 5192173 YP_001268054.1 CDS Pput_2736 NC_009512.1 3111929 3112252 D hypothetical protein 3111929..3112252 Pseudomonas putida F1 5192174 YP_001268055.1 CDS Pput_2737 NC_009512.1 3112344 3112814 D hypothetical protein 3112344..3112814 Pseudomonas putida F1 5192870 YP_001268056.1 CDS Pput_2738 NC_009512.1 3112840 3115020 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 3112840..3115020 Pseudomonas putida F1 5192871 YP_001268057.1 CDS Pput_2739 NC_009512.1 3115010 3115975 D PFAM: ApbE family lipoprotein; ApbE family lipoprotein 3115010..3115975 Pseudomonas putida F1 5193526 YP_001268058.1 CDS Pput_2740 NC_009512.1 3116045 3116746 D PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein 3116045..3116746 Pseudomonas putida F1 5193527 YP_001268059.1 CDS Pput_2741 NC_009512.1 3116958 3117434 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3116958..3117434 Pseudomonas putida F1 5191082 YP_001268060.1 CDS Pput_2742 NC_009512.1 3117507 3118910 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; response regulator receiver sensor signal transduction histidine kinase complement(3117507..3118910) Pseudomonas putida F1 5191083 YP_001268061.1 CDS Pput_2743 NC_009512.1 3118907 3120721 R PFAM: ATP-binding region, ATPase domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(3118907..3120721) Pseudomonas putida F1 5190304 YP_001268062.1 CDS Pput_2744 NC_009512.1 3120718 3121716 R PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase complement(3120718..3121716) Pseudomonas putida F1 5190305 YP_001268063.1 CDS Pput_2745 NC_009512.1 3121914 3123284 D PFAM: response regulator receiver; response regulator receiver protein 3121914..3123284 Pseudomonas putida F1 5191094 YP_001268064.1 CDS Pput_2746 NC_009512.1 3123405 3124070 D PFAM: protein of unknown function DUF159; hypothetical protein 3123405..3124070 Pseudomonas putida F1 5191095 YP_001268065.1 CDS Pput_2747 NC_009512.1 3124687 3125016 R hypothetical protein complement(3124687..3125016) Pseudomonas putida F1 5194896 YP_001268066.1 CDS Pput_2748 NC_009512.1 3125485 3125739 D hypothetical protein 3125485..3125739 Pseudomonas putida F1 5194897 YP_001268067.1 CDS Pput_2749 NC_009512.1 3125732 3126031 D PFAM: Helix-turn-helix, type 11 domain protein; helix-turn-helix, type 11 domain-containing protein 3125732..3126031 Pseudomonas putida F1 5190292 YP_001268068.1 CDS Pput_2750 NC_009512.1 3126108 3126623 D PFAM: protein of unknown function DUF925; hypothetical protein 3126108..3126623 Pseudomonas putida F1 5190293 YP_001268069.1 CDS dapF NC_009512.1 3127298 3128104 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3127298..3128104) Pseudomonas putida F1 5194418 YP_001268070.1 CDS Pput_2752 NC_009512.1 3128372 3128953 D hypothetical protein 3128372..3128953 Pseudomonas putida F1 5194419 YP_001268071.1 CDS Pput_2753 NC_009512.1 3129855 3130457 D PFAM: OsmC family protein; OsmC family protein 3129855..3130457 Pseudomonas putida F1 5193779 YP_001268072.1 CDS Pput_2755 NC_009512.1 3131086 3132672 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3131086..3132672 Pseudomonas putida F1 5192167 YP_001268073.1 CDS Pput_2756 NC_009512.1 3132848 3134041 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3132848..3134041 Pseudomonas putida F1 5195241 YP_001268074.1 CDS Pput_2757 NC_009512.1 3134003 3135049 R hypothetical protein complement(3134003..3135049) Pseudomonas putida F1 5195242 YP_001268075.1 CDS Pput_2758 NC_009512.1 3135251 3136093 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3135251..3136093 Pseudomonas putida F1 5194566 YP_001268076.1 CDS Pput_2760 NC_009512.1 3136678 3138381 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3136678..3138381 Pseudomonas putida F1 5192168 YP_001268077.1 CDS Pput_2761 NC_009512.1 3138434 3139138 D PFAM: YheO domain protein; YheO domain-containing protein 3138434..3139138 Pseudomonas putida F1 5192114 YP_001268078.1 CDS Pput_2762 NC_009512.1 3139135 3140052 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 3139135..3140052 Pseudomonas putida F1 5192115 YP_001268079.1 CDS Pput_2763 NC_009512.1 3140237 3141334 D TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 3140237..3141334 Pseudomonas putida F1 5192451 YP_001268080.1 CDS Pput_2764 NC_009512.1 3141367 3142611 D PFAM: Saccharopine dehydrogenase; saccharopine dehydrogenase 3141367..3142611 Pseudomonas putida F1 5192452 YP_001268081.1 CDS Pput_2765 NC_009512.1 3142758 3143804 R PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase complement(3142758..3143804) Pseudomonas putida F1 5192200 YP_001268082.1 CDS Pput_2766 NC_009512.1 3144049 3145377 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; UDP-glucose 6-dehydrogenase 3144049..3145377 Pseudomonas putida F1 5192201 YP_001268083.1 CDS Pput_2767 NC_009512.1 3145387 3147006 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(3145387..3147006) Pseudomonas putida F1 5193954 YP_001268084.1 CDS Pput_2768 NC_009512.1 3147149 3148369 D PFAM: Radical SAM domain protein; radical SAM domain-containing protein 3147149..3148369 Pseudomonas putida F1 5193955 YP_001268085.1 CDS Pput_2769 NC_009512.1 3148366 3149208 D hypothetical protein 3148366..3149208 Pseudomonas putida F1 5193043 YP_001268086.1 CDS Pput_2770 NC_009512.1 3149270 3150241 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein complement(3149270..3150241) Pseudomonas putida F1 5193044 YP_001268087.1 CDS Pput_2771 NC_009512.1 3150238 3151125 R PFAM: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(3150238..3151125) Pseudomonas putida F1 5191510 YP_001268088.1 CDS Pput_2772 NC_009512.1 3151218 3151976 R PFAM: LamB/YcsF family protein; hypothetical protein complement(3151218..3151976) Pseudomonas putida F1 5191511 YP_001268089.1 CDS Pput_2773 NC_009512.1 3152097 3153014 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3152097..3153014 Pseudomonas putida F1 5190600 YP_001268090.1 CDS Pput_2774 NC_009512.1 3153206 3155272 D TIGRFAM: trehalose synthase; trehalose synthase 3153206..3155272 Pseudomonas putida F1 5190601 YP_001268091.1 CDS Pput_2775 NC_009512.1 3155445 3156074 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3155445..3156074 Pseudomonas putida F1 5193360 YP_001268092.1 CDS Pput_2776 NC_009512.1 3156084 3156785 D PFAM: protein of unknown function DUF1275; hypothetical protein 3156084..3156785 Pseudomonas putida F1 5193361 YP_001268093.1 CDS Pput_2777 NC_009512.1 3156786 3158288 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; proline/glycine betaine transporter complement(3156786..3158288) Pseudomonas putida F1 5195305 YP_001268094.1 CDS Pput_2778 NC_009512.1 3158447 3159421 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3158447..3159421) Pseudomonas putida F1 5195306 YP_001268095.1 CDS Pput_2779 NC_009512.1 3159617 3160510 R PFAM: protein of unknown function RIO1; hypothetical protein complement(3159617..3160510) Pseudomonas putida F1 5190268 YP_001268096.1 CDS Pput_2780 NC_009512.1 3160598 3161989 R TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; GABA permease complement(3160598..3161989) Pseudomonas putida F1 5190269 YP_001268097.1 CDS Pput_2781 NC_009512.1 3162140 3163390 R catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase complement(3162140..3163390) Pseudomonas putida F1 5190868 YP_001268098.1 CDS Pput_2782 NC_009512.1 3163505 3164482 R in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein complement(3163505..3164482) Pseudomonas putida F1 5190869 YP_001268099.1 CDS Pput_2783 NC_009512.1 3164573 3165373 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3164573..3165373 Pseudomonas putida F1 5193770 YP_001268100.1 CDS Pput_2784 NC_009512.1 3165448 3166128 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3165448..3166128 Pseudomonas putida F1 5193771 YP_001268101.1 CDS Pput_2785 NC_009512.1 3166106 3167497 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3166106..3167497 Pseudomonas putida F1 5190996 YP_001268102.1 CDS cysS NC_009512.1 3167628 3169010 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3167628..3169010) Pseudomonas putida F1 5190997 YP_001268103.1 CDS Pput_2787 NC_009512.1 3169020 3170723 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3169020..3170723) Pseudomonas putida F1 5192039 YP_001268104.1 CDS Pput_2788 NC_009512.1 3170882 3171472 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 3170882..3171472 Pseudomonas putida F1 5192040 YP_001268105.1 CDS Pput_2789 NC_009512.1 3171469 3172191 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3171469..3172191 Pseudomonas putida F1 5194273 YP_001268106.1 CDS Pput_2790 NC_009512.1 3172313 3174604 R PFAM: peptidase S45, penicillin amidase; peptidase S45, penicillin amidase complement(3172313..3174604) Pseudomonas putida F1 5194274 YP_001268107.1 CDS Pput_2791 NC_009512.1 3174822 3175196 D hypothetical protein 3174822..3175196 Pseudomonas putida F1 5194938 YP_001268108.1 CDS Pput_2792 NC_009512.1 3175233 3175421 R hypothetical protein complement(3175233..3175421) Pseudomonas putida F1 5194939 YP_001268109.1 CDS Pput_2793 NC_009512.1 3175573 3176031 D hypothetical protein 3175573..3176031 Pseudomonas putida F1 5191566 YP_001268110.1 CDS Pput_2794 NC_009512.1 3176283 3176663 D hypothetical protein 3176283..3176663 Pseudomonas putida F1 5191567 YP_001268111.1 CDS Pput_2795 NC_009512.1 3176729 3177373 D hypothetical protein 3176729..3177373 Pseudomonas putida F1 5195025 YP_001268112.1 CDS Pput_2796 NC_009512.1 3177469 3178002 D hypothetical protein 3177469..3178002 Pseudomonas putida F1 5195026 YP_001268113.1 CDS Pput_2797 NC_009512.1 3178022 3181642 R PFAM: protein of unknown function DUF490; hypothetical protein complement(3178022..3181642) Pseudomonas putida F1 5190413 YP_001268114.1 CDS Pput_2798 NC_009512.1 3181693 3183444 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) complement(3181693..3183444) Pseudomonas putida F1 5190414 YP_001268115.1 CDS Pput_2799 NC_009512.1 3183488 3184138 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3183488..3184138) Pseudomonas putida F1 5190830 YP_001268116.1 CDS Pput_2800 NC_009512.1 3184301 3185113 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3184301..3185113 Pseudomonas putida F1 5190831 YP_001268117.1 CDS Pput_2801 NC_009512.1 3185154 3185906 R putative transmembrane anti-sigma factor complement(3185154..3185906) Pseudomonas putida F1 5193122 YP_001268118.1 CDS Pput_2802 NC_009512.1 3185903 3186424 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(3185903..3186424) Pseudomonas putida F1 5193123 YP_001268119.1 CDS Pput_2803 NC_009512.1 3186549 3187601 D PFAM: Catalase domain protein; catalase domain-containing protein 3186549..3187601 Pseudomonas putida F1 5190256 YP_001268120.1 CDS Pput_2804 NC_009512.1 3187598 3188131 D PFAM: cytochrome B561; cytochrome B561 3187598..3188131 Pseudomonas putida F1 5190257 YP_001268121.1 CDS Pput_2805 NC_009512.1 3188213 3189418 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3188213..3189418 Pseudomonas putida F1 5190338 YP_001268122.1 CDS Pput_2806 NC_009512.1 3189500 3190045 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3189500..3190045 Pseudomonas putida F1 5190339 YP_001268123.1 CDS Pput_2807 NC_009512.1 3190048 3190347 D hypothetical protein 3190048..3190347 Pseudomonas putida F1 5190988 YP_001268124.1 CDS Pput_2808 NC_009512.1 3190320 3190934 R PFAM: DSBA oxidoreductase; DSBA oxidoreductase complement(3190320..3190934) Pseudomonas putida F1 5190989 YP_001268125.1 CDS Pput_2809 NC_009512.1 3190964 3191695 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3190964..3191695) Pseudomonas putida F1 5195441 YP_001268126.1 CDS Pput_2810 NC_009512.1 3191785 3192348 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3191785..3192348 Pseudomonas putida F1 5195442 YP_001268127.1 CDS Pput_2811 NC_009512.1 3192335 3192928 D hypothetical protein 3192335..3192928 Pseudomonas putida F1 5190234 YP_001268128.1 CDS Pput_2812 NC_009512.1 3193287 3194288 R PFAM: Bile acid:sodium symporter; bile acid:sodium symporter complement(3193287..3194288) Pseudomonas putida F1 5190235 YP_001268129.1 CDS ampC NC_009512.1 3194396 3195538 D PFAM: beta-lactamase; beta-lactamase 3194396..3195538 Pseudomonas putida F1 5192335 YP_001268130.1 CDS Pput_2814 NC_009512.1 3195839 3196171 D hypothetical protein 3195839..3196171 Pseudomonas putida F1 5192336 YP_001268131.1 CDS Pput_2815 NC_009512.1 3196218 3196529 R hypothetical protein complement(3196218..3196529) Pseudomonas putida F1 5195094 YP_001268132.1 CDS Pput_2816 NC_009512.1 3196998 3197318 R PFAM: protein of unknown function DUF74; hypothetical protein complement(3196998..3197318) Pseudomonas putida F1 5195095 YP_001268133.1 CDS Pput_2817 NC_009512.1 3197389 3198273 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(3197389..3198273) Pseudomonas putida F1 5192627 YP_001268134.1 CDS Pput_2818 NC_009512.1 3198436 3199191 R PFAM: class II aldolase/adducin family protein; aldolase II superfamily protein complement(3198436..3199191) Pseudomonas putida F1 5192628 YP_001268135.1 CDS Pput_2819 NC_009512.1 3199214 3200257 R spermidine/putrescine-binding periplasmic protein-like protein complement(3199214..3200257) Pseudomonas putida F1 5192058 YP_001268136.1 CDS Pput_2820 NC_009512.1 3200431 3202383 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; NADH:flavin oxidoreductase 3200431..3202383 Pseudomonas putida F1 5192059 YP_001268137.1 CDS Pput_2821 NC_009512.1 3202423 3203022 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3202423..3203022 Pseudomonas putida F1 5193207 YP_001268138.1 CDS Pput_2822 NC_009512.1 3203103 3204305 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3203103..3204305 Pseudomonas putida F1 5193208 YP_001268139.1 CDS Pput_2823 NC_009512.1 3204374 3204985 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(3204374..3204985) Pseudomonas putida F1 5193918 YP_001268140.1 CDS Pput_2824 NC_009512.1 3205119 3206021 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3205119..3206021 Pseudomonas putida F1 5193919 YP_001268141.1 CDS Pput_2825 NC_009512.1 3206014 3206373 D PFAM: protein of unknown function DUF419; hypothetical protein 3206014..3206373 Pseudomonas putida F1 5192131 YP_001268142.1 CDS Pput_2826 NC_009512.1 3206432 3206845 R PFAM: protein of unknown function DUF1294; hypothetical protein complement(3206432..3206845) Pseudomonas putida F1 5192132 YP_001268143.1 CDS Pput_2827 NC_009512.1 3206838 3207668 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3206838..3207668) Pseudomonas putida F1 5194279 YP_001268144.1 CDS Pput_2828 NC_009512.1 3207969 3209603 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 3207969..3209603 Pseudomonas putida F1 5194280 YP_001268145.1 CDS Pput_2829 NC_009512.1 3210153 3210719 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3210153..3210719 Pseudomonas putida F1 5192824 YP_001268146.1 CDS Pput_2830 NC_009512.1 3210716 3211285 D hypothetical protein 3210716..3211285 Pseudomonas putida F1 5192825 YP_001268147.1 CDS Pput_2831 NC_009512.1 3211583 3212020 D hypothetical protein 3211583..3212020 Pseudomonas putida F1 5191140 YP_001268148.1 CDS Pput_2832 NC_009512.1 3212022 3212600 D hypothetical protein 3212022..3212600 Pseudomonas putida F1 5191141 YP_001268149.1 CDS Pput_2833 NC_009512.1 3212650 3214101 D hypothetical protein 3212650..3214101 Pseudomonas putida F1 5192428 YP_001268150.1 CDS Pput_2834 NC_009512.1 3214163 3214843 D PFAM: peptidase C39, bacteriocin processing; peptidase C39, bacteriocin processing 3214163..3214843 Pseudomonas putida F1 5192429 YP_001268151.1 CDS Pput_2835 NC_009512.1 3214889 3215641 D hypothetical protein 3214889..3215641 Pseudomonas putida F1 5193984 YP_001268152.1 CDS Pput_2836 NC_009512.1 3215688 3216968 D hypothetical protein 3215688..3216968 Pseudomonas putida F1 5193985 YP_001268153.1 CDS Pput_2837 NC_009512.1 3217104 3219305 D PFAM: sulfatase; sulfatase 3217104..3219305 Pseudomonas putida F1 5192601 YP_001268154.1 CDS Pput_2838 NC_009512.1 3219400 3220128 D PFAM: protein of unknown function DUF899, thioredoxin family protein; hypothetical protein 3219400..3220128 Pseudomonas putida F1 5192602 YP_001268155.1 CDS Pput_2839 NC_009512.1 3220568 3223036 R SMART: phosphatidylinositol-specific phospholipase C, X region; phosphatidylinositol-specific phospholipase C, X region complement(3220568..3223036) Pseudomonas putida F1 5191733 YP_001268156.1 CDS Pput_2840 NC_009512.1 3223305 3223928 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; urease accessory protein UreG complement(3223305..3223928) Pseudomonas putida F1 5191734 YP_001268157.1 CDS Pput_2841 NC_009512.1 3223940 3224614 R PFAM: Urease accessory protein UreF; urease accessory protein UreF complement(3223940..3224614) Pseudomonas putida F1 5192960 YP_001268158.1 CDS Pput_2842 NC_009512.1 3224614 3225159 R PFAM: HupE/UreJ protein; HupE/UreJ protein complement(3224614..3225159) Pseudomonas putida F1 5192961 YP_001268159.1 CDS ureE NC_009512.1 3225178 3225681 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(3225178..3225681) Pseudomonas putida F1 5190568 YP_001268160.1 CDS ureC NC_009512.1 3225691 3227394 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(3225691..3227394) Pseudomonas putida F1 5190569 YP_001268161.1 CDS ureB NC_009512.1 3227391 3227744 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(3227391..3227744) Pseudomonas putida F1 5190645 YP_001268162.1 CDS ureA NC_009512.1 3227728 3228030 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(3227728..3228030) Pseudomonas putida F1 5190646 YP_001268163.1 CDS Pput_2847 NC_009512.1 3228040 3228876 R PFAM: Urease accessory protein UreD; urease accessory protein UreD complement(3228040..3228876) Pseudomonas putida F1 5195212 YP_001268164.1 CDS Pput_2848 NC_009512.1 3229149 3230063 R PFAM: phage integrase family protein; phage integrase family protein complement(3229149..3230063) Pseudomonas putida F1 5195213 YP_001268165.1 CDS Pput_2849 NC_009512.1 3230280 3231461 D PFAM: NnrS family protein; NnrS family protein 3230280..3231461 Pseudomonas putida F1 5193381 YP_001268166.1 CDS Pput_2850 NC_009512.1 3231559 3233820 R PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; DEAD/DEAH box helicase complement(3231559..3233820) Pseudomonas putida F1 5193382 YP_001268167.1 CDS Pput_2851 NC_009512.1 3233817 3235466 R PFAM: VRR-NUC; VRR-NUC domain-containing protein complement(3233817..3235466) Pseudomonas putida F1 5193998 YP_001268168.1 CDS Pput_2852 NC_009512.1 3235592 3236908 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3235592..3236908) Pseudomonas putida F1 5193999 YP_001268169.1 CDS Pput_2853 NC_009512.1 3236999 3238240 R fumarylacetoacetate (FAA) hydrolase family protein complement(3236999..3238240) Pseudomonas putida F1 5194742 YP_001268170.1 CDS Pput_2854 NC_009512.1 3238237 3239295 R PFAM: Malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(3238237..3239295) Pseudomonas putida F1 5194743 YP_001268171.1 CDS Pput_2855 NC_009512.1 3239331 3240872 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; altronate dehydratase complement(3239331..3240872) Pseudomonas putida F1 5195336 YP_001268172.1 CDS Pput_2856 NC_009512.1 3241019 3241990 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3241019..3241990) Pseudomonas putida F1 5195337 YP_001268173.1 CDS Pput_2857 NC_009512.1 3242018 3242965 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3242018..3242965) Pseudomonas putida F1 5193332 YP_001268174.1 CDS Pput_2858 NC_009512.1 3243067 3244380 D PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; mandelate racemase/muconate lactonizing protein 3243067..3244380 Pseudomonas putida F1 5193333 YP_001268175.1 CDS Pput_2859 NC_009512.1 3244447 3245748 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3244447..3245748 Pseudomonas putida F1 5194976 YP_001268176.1 CDS Pput_2860 NC_009512.1 3245876 3247231 R PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator complement(3245876..3247231) Pseudomonas putida F1 5194977 YP_001268177.1 CDS Pput_2861 NC_009512.1 3247231 3248616 R hypothetical protein complement(3247231..3248616) Pseudomonas putida F1 5193482 YP_001268178.1 CDS Pput_2862 NC_009512.1 3249134 3250156 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(3249134..3250156) Pseudomonas putida F1 5193483 YP_001268179.1 CDS Pput_2863 NC_009512.1 3250363 3251277 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3250363..3251277 Pseudomonas putida F1 5191626 YP_001268180.1 CDS Pput_2864 NC_009512.1 3251545 3252702 D PFAM: phage integrase family protein; phage integrase family protein 3251545..3252702 Pseudomonas putida F1 5191627 YP_001268181.1 CDS Pput_2866 NC_009512.1 3253810 3254592 R PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; regulatory protein IclR complement(3253810..3254592) Pseudomonas putida F1 5194251 YP_001268182.1 CDS Pput_2867 NC_009512.1 3254778 3255983 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3254778..3255983 Pseudomonas putida F1 5195373 YP_001268183.1 CDS Pput_2868 NC_009512.1 3255998 3259138 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3255998..3259138 Pseudomonas putida F1 5194759 YP_001268184.1 CDS Pput_2869 NC_009512.1 3259135 3260577 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 3259135..3260577 Pseudomonas putida F1 5194760 YP_001268185.1 CDS Pput_2870 NC_009512.1 3260657 3260833 D hypothetical protein 3260657..3260833 Pseudomonas putida F1 5193096 YP_001268186.1 CDS Pput_2871 NC_009512.1 3260962 3261582 R PFAM: regulatory protein, LuxR; response regulator receiver; response regulator receiver protein complement(3260962..3261582) Pseudomonas putida F1 5193097 YP_001268187.1 CDS Pput_2872 NC_009512.1 3261579 3264515 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(3261579..3264515) Pseudomonas putida F1 5194483 YP_001268188.1 CDS Pput_2873 NC_009512.1 3264729 3265787 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(3264729..3265787) Pseudomonas putida F1 5194484 YP_001268189.1 CDS Pput_2874 NC_009512.1 3265798 3266748 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(3265798..3266748) Pseudomonas putida F1 5193057 YP_001268190.1 CDS Pput_2875 NC_009512.1 3266856 3267662 R PFAM: Hydratase/decarboxylase; 4-oxalocrotonate decarboxylase complement(3266856..3267662) Pseudomonas putida F1 5193058 YP_001268191.1 CDS Pput_2876 NC_009512.1 3267784 3268659 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3267784..3268659) Pseudomonas putida F1 5193758 YP_001268192.1 CDS Pput_2877 NC_009512.1 3268675 3269502 R Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase complement(3268675..3269502) Pseudomonas putida F1 5193759 YP_001268193.1 CDS Pput_2878 NC_009512.1 3269499 3270731 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3269499..3270731) Pseudomonas putida F1 5192603 YP_001268194.1 CDS Pput_2879 NC_009512.1 3270731 3271054 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(3270731..3271054) Pseudomonas putida F1 5192604 YP_001268195.1 CDS Pput_2880 NC_009512.1 3271063 3271626 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; toluene dioxygenase complement(3271063..3271626) Pseudomonas putida F1 5195398 YP_001268196.1 CDS Pput_2881 NC_009512.1 3271737 3273089 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; ring hydroxylating dioxygenase subunit alpha complement(3271737..3273089) Pseudomonas putida F1 5195399 YP_001268197.1 CDS Pput_2882 NC_009512.1 3273186 3274016 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3273186..3274016) Pseudomonas putida F1 5195342 YP_001268198.1 CDS Pput_2883 NC_009512.1 3274042 3275403 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(3274042..3275403) Pseudomonas putida F1 5195343 YP_001268199.1 CDS Pput_2884 NC_009512.1 3275718 3276020 D PFAM: regulatory protein, LysR; LysR family transcriptional regulator 3275718..3276020 Pseudomonas putida F1 5194479 YP_001268200.1 CDS Pput_2885 NC_009512.1 3276563 3276646 R hypothetical protein complement(3276563..3276646) Pseudomonas putida F1 5194480 YP_001268201.1 CDS Pput_2887 NC_009512.1 3277239 3278306 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3277239..3278306) Pseudomonas putida F1 5194252 YP_001268202.1 CDS Pput_2888 NC_009512.1 3278698 3279750 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(3278698..3279750) Pseudomonas putida F1 5193991 YP_001268203.1 CDS Pput_2889 NC_009512.1 3279763 3280707 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(3279763..3280707) Pseudomonas putida F1 5192958 YP_001268204.1 CDS Pput_2890 NC_009512.1 3280721 3281509 R PFAM: Hydratase/decarboxylase; 4-oxalocrotonate decarboxylase complement(3280721..3281509) Pseudomonas putida F1 5192959 YP_001268205.1 CDS Pput_2891 NC_009512.1 3281520 3282386 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3281520..3282386) Pseudomonas putida F1 5193185 YP_001268206.1 CDS Pput_2892 NC_009512.1 3282504 3283127 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(3282504..3283127) Pseudomonas putida F1 5193186 YP_001268207.1 CDS Pput_2893 NC_009512.1 3283248 3283979 R PFAM: class II aldolase/adducin family protein; class II aldolase/adducin family protein complement(3283248..3283979) Pseudomonas putida F1 5195529 YP_001268208.1 CDS Pput_2894 NC_009512.1 3283976 3284332 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(3283976..3284332) Pseudomonas putida F1 5195530 YP_001268209.1 CDS Pput_2895 NC_009512.1 3284343 3285122 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3284343..3285122) Pseudomonas putida F1 5191657 YP_001268210.1 CDS Pput_2896 NC_009512.1 3285119 3286057 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3285119..3286057) Pseudomonas putida F1 5191658 YP_001268211.1 CDS Pput_2897 NC_009512.1 3286070 3286612 R PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta complement(3286070..3286612) Pseudomonas putida F1 5191069 YP_001268212.1 CDS Pput_2898 NC_009512.1 3286623 3287927 R PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; ring hydroxylating dioxygenase subunit alpha complement(3286623..3287927) Pseudomonas putida F1 5191070 YP_001268213.1 CDS Pput_2899 NC_009512.1 3287960 3289168 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3287960..3289168) Pseudomonas putida F1 5194668 YP_001268214.1 CDS prpE NC_009512.1 3289375 3291324 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(3289375..3291324) Pseudomonas putida F1 5194669 YP_001268215.1 CDS Pput_2901 NC_009512.1 3291372 3292754 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(3291372..3292754) Pseudomonas putida F1 5194459 YP_001268216.1 CDS Pput_2902 NC_009512.1 3292791 3293840 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(3292791..3293840) Pseudomonas putida F1 5194460 YP_001268217.1 CDS Pput_2903 NC_009512.1 3294184 3295314 R PFAM: fatty acid desaturase; fatty acid desaturase complement(3294184..3295314) Pseudomonas putida F1 5194638 YP_001268218.1 CDS Pput_2904 NC_009512.1 3295369 3296853 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(3295369..3296853) Pseudomonas putida F1 5194639 YP_001268219.1 CDS Pput_2905 NC_009512.1 3296904 3297662 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3296904..3297662) Pseudomonas putida F1 5193022 YP_001268220.1 CDS Pput_2906 NC_009512.1 3297932 3298594 D PFAM: dienelactone hydrolase; dienelactone hydrolase 3297932..3298594 Pseudomonas putida F1 5193023 YP_001268221.1 CDS Pput_2907 NC_009512.1 3298935 3299195 D hypothetical protein 3298935..3299195 Pseudomonas putida F1 5193214 YP_001268222.1 CDS Pput_2908 NC_009512.1 3299506 3300126 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(3299506..3300126) Pseudomonas putida F1 5193215 YP_001268223.1 CDS Pput_2910 NC_009512.1 3300770 3300880 D hypothetical protein 3300770..3300880 Pseudomonas putida F1 5194748 YP_001268224.1 CDS Pput_2911 NC_009512.1 3300933 3301145 D hypothetical protein 3300933..3301145 Pseudomonas putida F1 5191453 YP_001268225.1 CDS Pput_2912 NC_009512.1 3301647 3302384 D hypothetical protein 3301647..3302384 Pseudomonas putida F1 5191556 YP_001268226.1 CDS Pput_2913 NC_009512.1 3302498 3302713 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3302498..3302713 Pseudomonas putida F1 5191557 YP_001268227.1 CDS Pput_2914 NC_009512.1 3302717 3303595 D PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3302717..3303595 Pseudomonas putida F1 5190742 YP_001268228.1 CDS Pput_2915 NC_009512.1 3303610 3305148 D hypothetical protein 3303610..3305148 Pseudomonas putida F1 5190743 YP_001268229.1 CDS Pput_2916 NC_009512.1 3305165 3305716 D hypothetical protein 3305165..3305716 Pseudomonas putida F1 5194791 YP_001268230.1 CDS Pput_2917 NC_009512.1 3305710 3306927 D hypothetical protein 3305710..3306927 Pseudomonas putida F1 5194792 YP_001268231.1 CDS Pput_2918 NC_009512.1 3307079 3307834 D PFAM: Domain of unknown function DUF1845; hypothetical protein 3307079..3307834 Pseudomonas putida F1 5191821 YP_001268232.1 CDS Pput_2919 NC_009512.1 3307831 3308325 D hypothetical protein 3307831..3308325 Pseudomonas putida F1 5191822 YP_001268233.1 CDS Pput_2920 NC_009512.1 3308331 3308759 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3308331..3308759 Pseudomonas putida F1 5190716 YP_001268234.1 CDS Pput_2921 NC_009512.1 3308854 3309117 R hypothetical protein complement(3308854..3309117) Pseudomonas putida F1 5190717 YP_001268235.1 CDS Pput_2922 NC_009512.1 3309224 3309568 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 3309224..3309568 Pseudomonas putida F1 5190232 YP_001268236.1 CDS Pput_2923 NC_009512.1 3309666 3311630 D TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase III 3309666..3311630 Pseudomonas putida F1 5190233 YP_001268237.1 CDS Pput_2925 NC_009512.1 3312372 3312905 D hypothetical protein 3312372..3312905 Pseudomonas putida F1 5194749 YP_001268238.1 CDS Pput_2926 NC_009512.1 3312973 3313230 D hypothetical protein 3312973..3313230 Pseudomonas putida F1 5190430 YP_001268239.1 CDS Pput_2927 NC_009512.1 3313297 3313791 D PFAM: DNA repair protein RadC; DNA repair protein RadC 3313297..3313791 Pseudomonas putida F1 5191356 YP_001268240.1 CDS Pput_2928 NC_009512.1 3313857 3314573 D hypothetical protein 3313857..3314573 Pseudomonas putida F1 5191357 YP_001268241.1 CDS Pput_2929 NC_009512.1 3314704 3315219 D hypothetical protein 3314704..3315219 Pseudomonas putida F1 5194083 YP_001268242.1 CDS Pput_2930 NC_009512.1 3315216 3315887 D hypothetical protein 3315216..3315887 Pseudomonas putida F1 5194084 YP_001268243.1 CDS Pput_2931 NC_009512.1 3315898 3316617 D hypothetical protein 3315898..3316617 Pseudomonas putida F1 5192292 YP_001268244.1 CDS Pput_2932 NC_009512.1 3316599 3317153 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 3316599..3317153 Pseudomonas putida F1 5192293 YP_001268245.1 CDS Pput_2933 NC_009512.1 3317150 3317569 D hypothetical protein 3317150..3317569 Pseudomonas putida F1 5193819 YP_001268246.1 CDS Pput_2934 NC_009512.1 3317579 3319705 D hypothetical protein 3317579..3319705 Pseudomonas putida F1 5193820 YP_001268247.1 CDS Pput_2935 NC_009512.1 3319740 3320468 D hypothetical protein 3319740..3320468 Pseudomonas putida F1 5190978 YP_001268248.1 CDS Pput_2936 NC_009512.1 3320560 3320943 R PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(3320560..3320943) Pseudomonas putida F1 5190979 YP_001268249.1 CDS Pput_2937 NC_009512.1 3321033 3321989 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3321033..3321989 Pseudomonas putida F1 5195084 YP_001268250.1 CDS Pput_2938 NC_009512.1 3322222 3322512 R hypothetical protein complement(3322222..3322512) Pseudomonas putida F1 5195085 YP_001268251.1 CDS Pput_2939 NC_009512.1 3323046 3323438 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(3323046..3323438) Pseudomonas putida F1 5193203 YP_001268252.1 CDS Pput_2940 NC_009512.1 3323684 3324043 D hypothetical protein 3323684..3324043 Pseudomonas putida F1 5193204 YP_001268253.1 CDS Pput_2941 NC_009512.1 3324030 3324269 D hypothetical protein 3324030..3324269 Pseudomonas putida F1 5190687 YP_001268254.1 CDS Pput_2942 NC_009512.1 3324285 3324662 D hypothetical protein 3324285..3324662 Pseudomonas putida F1 5190688 YP_001268255.1 CDS Pput_2943 NC_009512.1 3324670 3325071 D hypothetical protein 3324670..3325071 Pseudomonas putida F1 5194763 YP_001268256.1 CDS Pput_2944 NC_009512.1 3325068 3325709 D hypothetical protein 3325068..3325709 Pseudomonas putida F1 5194764 YP_001268257.1 CDS Pput_2945 NC_009512.1 3325706 3326512 D hypothetical protein 3325706..3326512 Pseudomonas putida F1 5194035 YP_001268258.1 CDS Pput_2946 NC_009512.1 3326502 3328010 D hypothetical protein 3326502..3328010 Pseudomonas putida F1 5194036 YP_001268259.1 CDS Pput_2947 NC_009512.1 3327973 3328392 D hypothetical protein 3327973..3328392 Pseudomonas putida F1 5191985 YP_001268260.1 CDS Pput_2948 NC_009512.1 3328392 3331133 D Type IV secretory pathway VirB4 components-like protein 3328392..3331133 Pseudomonas putida F1 5191986 YP_001268261.1 CDS Pput_2949 NC_009512.1 3331271 3331480 R hypothetical protein complement(3331271..3331480) Pseudomonas putida F1 5192413 YP_001268262.1 CDS Pput_2950 NC_009512.1 3331462 3332736 R PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase complement(3331462..3332736) Pseudomonas putida F1 5192414 YP_001268263.1 CDS Pput_2951 NC_009512.1 3332726 3333202 R PFAM: peptidase S24, S26A and S26B; putative prophage repressor complement(3332726..3333202) Pseudomonas putida F1 5193030 YP_001268264.1 CDS Pput_2952 NC_009512.1 3333257 3333985 D PFAM: protein of unknown function DUF159; hypothetical protein 3333257..3333985 Pseudomonas putida F1 5193031 YP_001268265.1 CDS Pput_2953 NC_009512.1 3334579 3335610 D PFAM: protein of unknown function DUF1527; hypothetical protein 3334579..3335610 Pseudomonas putida F1 5193556 YP_001268266.1 CDS Pput_2954 NC_009512.1 3335610 3336965 D hypothetical protein 3335610..3336965 Pseudomonas putida F1 5193557 YP_001268267.1 CDS Pput_2955 NC_009512.1 3336962 3337267 D hypothetical protein 3336962..3337267 Pseudomonas putida F1 5190475 YP_001268268.1 CDS Pput_2956 NC_009512.1 3337277 3338815 D hypothetical protein 3337277..3338815 Pseudomonas putida F1 5190476 YP_001268269.1 CDS Pput_2957 NC_009512.1 3339648 3340013 D hypothetical protein 3339648..3340013 Pseudomonas putida F1 5193350 YP_001268270.1 CDS Pput_2958 NC_009512.1 3340217 3340633 D hypothetical protein 3340217..3340633 Pseudomonas putida F1 5193351 YP_001268271.1 CDS Pput_2959 NC_009512.1 3340719 3341657 D PFAM: domain of unknown function DUF1738; hypothetical protein 3340719..3341657 Pseudomonas putida F1 5190332 YP_001268272.1 CDS Pput_2960 NC_009512.1 3341744 3342109 R hypothetical protein complement(3341744..3342109) Pseudomonas putida F1 5190333 YP_001268273.1 CDS Pput_2961 NC_009512.1 3342234 3342437 R hypothetical protein complement(3342234..3342437) Pseudomonas putida F1 5190381 YP_001268274.1 CDS Pput_2962 NC_009512.1 3342578 3344365 D PFAM: protein of unknown function DUF1528; Relaxase; relaxase 3342578..3344365 Pseudomonas putida F1 5190382 YP_001268275.1 CDS Pput_2963 NC_009512.1 3344453 3347242 R DNA repair ATPase-like protein complement(3344453..3347242) Pseudomonas putida F1 5192037 YP_001268276.1 CDS Pput_2964 NC_009512.1 3347235 3347804 R hypothetical protein complement(3347235..3347804) Pseudomonas putida F1 5192038 YP_001268277.1 CDS Pput_2965 NC_009512.1 3347794 3350061 R hypothetical protein complement(3347794..3350061) Pseudomonas putida F1 5191991 YP_001268278.1 CDS Pput_2966 NC_009512.1 3352282 3352860 D PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 3352282..3352860 Pseudomonas putida F1 5191992 YP_001268279.1 CDS Pput_2967 NC_009512.1 3353027 3353410 D PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 3353027..3353410 Pseudomonas putida F1 5190943 YP_001268280.1 CDS Pput_2968 NC_009512.1 3353480 3356089 R RND efflux transporter complement(3353480..3356089) Pseudomonas putida F1 5190944 YP_001268281.1 CDS Pput_2969 NC_009512.1 3356123 3356959 R putative sigma E regulatory protein, MucB/RseB complement(3356123..3356959) Pseudomonas putida F1 5191352 YP_001268282.1 CDS Pput_2970 NC_009512.1 3357010 3358293 R hypothetical protein complement(3357010..3358293) Pseudomonas putida F1 5191353 YP_001268283.1 CDS Pput_2971 NC_009512.1 3358296 3359060 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(3358296..3359060) Pseudomonas putida F1 5190389 YP_001268284.1 CDS Pput_2972 NC_009512.1 3359057 3359794 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(3359057..3359794) Pseudomonas putida F1 5190390 YP_001268285.1 CDS Pput_2973 NC_009512.1 3359804 3362674 R PFAM: aminotransferase class-III; class III aminotransferase complement(3359804..3362674) Pseudomonas putida F1 5193813 YP_001268286.1 CDS Pput_2974 NC_009512.1 3362713 3363924 R PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein complement(3362713..3363924) Pseudomonas putida F1 5193814 YP_001268287.1 CDS Pput_2975 NC_009512.1 3363921 3365219 R PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein complement(3363921..3365219) Pseudomonas putida F1 5191767 YP_001268288.1 CDS Pput_2976 NC_009512.1 3365216 3366298 R hypothetical protein complement(3365216..3366298) Pseudomonas putida F1 5191768 YP_001268289.1 CDS Pput_2977 NC_009512.1 3366300 3367574 R PFAM: Beta-ketoacyl synthase-like; beta-ketoacyl synthase-like protein complement(3366300..3367574) Pseudomonas putida F1 5193675 YP_001268290.1 CDS Pput_2978 NC_009512.1 3367586 3368155 R hypothetical protein complement(3367586..3368155) Pseudomonas putida F1 5193676 YP_001268291.1 CDS Pput_2979 NC_009512.1 3368488 3369159 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3368488..3369159) Pseudomonas putida F1 5193671 YP_001268292.1 CDS Pput_2980 NC_009512.1 3369474 3369686 D hypothetical protein 3369474..3369686 Pseudomonas putida F1 5193672 YP_001268293.1 CDS Pput_2981 NC_009512.1 3369733 3370920 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 3369733..3370920 Pseudomonas putida F1 5190617 YP_001268294.1 CDS Pput_2982 NC_009512.1 3370929 3372032 D PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 3370929..3372032 Pseudomonas putida F1 5190618 YP_001268296.1 CDS Pput_2984 NC_009512.1 3372244 3373569 R branched chain amino acid ABC transporter substrate-binding protein complement(3372244..3373569) Pseudomonas putida F1 5193622 YP_001268297.1 CDS Pput_2985 NC_009512.1 3373637 3374704 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3373637..3374704) Pseudomonas putida F1 5193474 YP_001268298.1 CDS Pput_2986 NC_009512.1 3374717 3375598 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3374717..3375598) Pseudomonas putida F1 5193475 YP_001268299.1 CDS Pput_2987 NC_009512.1 3375574 3376407 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3375574..3376407) Pseudomonas putida F1 5193468 YP_001268300.1 CDS Pput_2988 NC_009512.1 3376417 3377547 R long-chain acyl-CoA synthetase-like protein complement(3376417..3377547) Pseudomonas putida F1 5193469 YP_001268301.1 CDS Pput_2989 NC_009512.1 3377559 3378650 R PFAM: luciferase family protein; luciferase family protein complement(3377559..3378650) Pseudomonas putida F1 5192088 YP_001268302.1 CDS Pput_2990 NC_009512.1 3378677 3379237 R PFAM: NADPH-dependent FMN reductase; FMN reductase complement(3378677..3379237) Pseudomonas putida F1 5192089 YP_001268303.1 CDS Pput_2991 NC_009512.1 3379576 3380814 D PFAM: Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase 3379576..3380814 Pseudomonas putida F1 5193633 YP_001268304.1 CDS Pput_2992 NC_009512.1 3380881 3381867 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3380881..3381867) Pseudomonas putida F1 5193634 YP_001268305.1 CDS Pput_2993 NC_009512.1 3381869 3382852 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3381869..3382852) Pseudomonas putida F1 5192365 YP_001268306.1 CDS Pput_2994 NC_009512.1 3382830 3384368 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3382830..3384368) Pseudomonas putida F1 5192366 YP_001268307.1 CDS Pput_2995 NC_009512.1 3384365 3385393 R sugar ABC transporter periplasmic protein-like protein complement(3384365..3385393) Pseudomonas putida F1 5190854 YP_001268308.1 CDS Pput_2996 NC_009512.1 3385390 3386361 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(3385390..3386361) Pseudomonas putida F1 5190855 YP_001268309.1 CDS Pput_2997 NC_009512.1 3386358 3386744 R hypothetical protein complement(3386358..3386744) Pseudomonas putida F1 5192821 YP_001268310.1 CDS Pput_2998 NC_009512.1 3386754 3387986 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; type 2 acyl-CoA dehydrogenase complement(3386754..3387986) Pseudomonas putida F1 5192822 YP_001268311.1 CDS Pput_2999 NC_009512.1 3388334 3389683 R PFAM: outer membrane porin; outer membrane porin complement(3388334..3389683) Pseudomonas putida F1 5191266 YP_001268312.1 CDS Pput_3000 NC_009512.1 3389967 3390743 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3389967..3390743) Pseudomonas putida F1 5191267 YP_001268313.1 CDS Pput_3001 NC_009512.1 3390860 3392194 R branched chain amino acid ABC transporter substrate-binding protein complement(3390860..3392194) Pseudomonas putida F1 5191128 YP_001268314.1 CDS Pput_3002 NC_009512.1 3392254 3393654 R branched chain amino acid ABC transporter substrate-binding protein complement(3392254..3393654) Pseudomonas putida F1 5191129 YP_001268315.1 CDS Pput_3003 NC_009512.1 3393673 3394737 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3393673..3394737) Pseudomonas putida F1 5191741 YP_001268316.1 CDS Pput_3004 NC_009512.1 3394742 3395623 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3394742..3395623) Pseudomonas putida F1 5191742 YP_001268317.1 CDS Pput_3005 NC_009512.1 3395620 3396390 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3395620..3396390) Pseudomonas putida F1 5193635 YP_001268318.1 CDS Pput_3006 NC_009512.1 3396387 3397358 R hypothetical protein complement(3396387..3397358) Pseudomonas putida F1 5193636 YP_001268319.1 CDS Pput_3007 NC_009512.1 3397379 3398788 R hypothetical protein complement(3397379..3398788) Pseudomonas putida F1 5191560 YP_001268320.1 CDS Pput_3008 NC_009512.1 3399125 3400021 D PFAM: UspA domain protein; UspA domain-containing protein 3399125..3400021 Pseudomonas putida F1 5191561 YP_001268321.1 CDS Pput_3009 NC_009512.1 3400117 3401076 D TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3400117..3401076 Pseudomonas putida F1 5193661 YP_001268322.1 CDS Pput_3010 NC_009512.1 3401265 3401858 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3401265..3401858 Pseudomonas putida F1 5193662 YP_001268323.1 CDS Pput_3011 NC_009512.1 3401855 3402214 D PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 3401855..3402214 Pseudomonas putida F1 5190275 YP_001268324.1 CDS Pput_3012 NC_009512.1 3402282 3403919 D PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3402282..3403919 Pseudomonas putida F1 5190276 YP_001268325.1 CDS Pput_3013 NC_009512.1 3404125 3405012 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(3404125..3405012) Pseudomonas putida F1 5194928 YP_001268326.1 CDS Pput_3014 NC_009512.1 3405166 3405612 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3405166..3405612 Pseudomonas putida F1 5194929 YP_001268327.1 CDS Pput_3015 NC_009512.1 3405716 3406138 D PFAM: protein of unknown function DUF1486; hypothetical protein 3405716..3406138 Pseudomonas putida F1 5195286 YP_001268328.1 CDS Pput_3016 NC_009512.1 3406135 3406887 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3406135..3406887 Pseudomonas putida F1 5195287 YP_001268329.1 CDS Pput_3017 NC_009512.1 3406894 3408141 D PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 3406894..3408141 Pseudomonas putida F1 5194238 YP_001268330.1 CDS Pput_3018 NC_009512.1 3408138 3408947 D PFAM: protein of unknown function DUF1365; hypothetical protein 3408138..3408947 Pseudomonas putida F1 5194239 YP_001268331.1 CDS Pput_3019 NC_009512.1 3408919 3410184 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 3408919..3410184 Pseudomonas putida F1 5190521 YP_001268332.1 CDS Pput_3020 NC_009512.1 3410184 3410672 D hypothetical protein 3410184..3410672 Pseudomonas putida F1 5190522 YP_001268333.1 CDS Pput_3021 NC_009512.1 3410610 3410792 R hypothetical protein complement(3410610..3410792) Pseudomonas putida F1 5195487 YP_001268334.1 CDS Pput_3022 NC_009512.1 3410789 3412315 R PFAM: deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein complement(3410789..3412315) Pseudomonas putida F1 5195488 YP_001268335.1 CDS Pput_3023 NC_009512.1 3412324 3412629 R hypothetical protein complement(3412324..3412629) Pseudomonas putida F1 5194835 YP_001268336.1 CDS Pput_3024 NC_009512.1 3412626 3413162 R hypothetical protein complement(3412626..3413162) Pseudomonas putida F1 5194836 YP_001268337.1 CDS Pput_3025 NC_009512.1 3413165 3413701 R hypothetical protein complement(3413165..3413701) Pseudomonas putida F1 5195364 YP_001268338.1 CDS Pput_3026 NC_009512.1 3413861 3414352 D PFAM: protein of unknown function DUF1543; hypothetical protein 3413861..3414352 Pseudomonas putida F1 5195365 YP_001268339.1 CDS Pput_3027 NC_009512.1 3414431 3415201 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3414431..3415201 Pseudomonas putida F1 5195374 YP_001268340.1 CDS Pput_3028 NC_009512.1 3415297 3415989 D hypothetical protein 3415297..3415989 Pseudomonas putida F1 5195375 YP_001268341.1 CDS Pput_3029 NC_009512.1 3416082 3416621 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 3416082..3416621 Pseudomonas putida F1 5195400 YP_001268342.1 CDS Pput_3030 NC_009512.1 3416678 3417235 R hypothetical protein complement(3416678..3417235) Pseudomonas putida F1 5195401 YP_001268343.1 CDS Pput_3031 NC_009512.1 3417397 3418254 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3417397..3418254 Pseudomonas putida F1 5192850 YP_001268344.1 CDS Pput_3032 NC_009512.1 3418424 3418888 D PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 3418424..3418888 Pseudomonas putida F1 5192851 YP_001268345.1 CDS Pput_3033 NC_009512.1 3418885 3419184 D hypothetical protein 3418885..3419184 Pseudomonas putida F1 5193268 YP_001268346.1 CDS Pput_3034 NC_009512.1 3419280 3419717 D PFAM: regulatory protein, ArsR; regulatory protein ArsR 3419280..3419717 Pseudomonas putida F1 5193269 YP_001268347.1 CDS Pput_3035 NC_009512.1 3419739 3421022 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; arsenical pump membrane protein 3419739..3421022 Pseudomonas putida F1 5193558 YP_001268348.1 CDS Pput_3036 NC_009512.1 3421051 3421521 D PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 3421051..3421521 Pseudomonas putida F1 5193559 YP_001268349.1 CDS Pput_3037 NC_009512.1 3421535 3422236 D TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase; arsenate resistance ArsH 3421535..3422236 Pseudomonas putida F1 5191016 YP_001268350.1 CDS Pput_3038 NC_009512.1 3422249 3423613 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(3422249..3423613) Pseudomonas putida F1 5191017 YP_001268351.1 CDS Pput_3039 NC_009512.1 3423610 3424272 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(3423610..3424272) Pseudomonas putida F1 5195185 YP_001268352.1 CDS Pput_3040 NC_009512.1 3424275 3424916 R hypothetical protein complement(3424275..3424916) Pseudomonas putida F1 5195186 YP_001268353.1 CDS Pput_3041 NC_009512.1 3424913 3425719 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; short chain dehydrogenase complement(3424913..3425719) Pseudomonas putida F1 5190554 YP_001268354.1 CDS Pput_3042 NC_009512.1 3425706 3426386 R hypothetical protein complement(3425706..3426386) Pseudomonas putida F1 5190555 YP_001268355.1 CDS Pput_3043 NC_009512.1 3426395 3427864 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3426395..3427864) Pseudomonas putida F1 5195463 YP_001268356.1 CDS Pput_3044 NC_009512.1 3427854 3428534 R hypothetical protein complement(3427854..3428534) Pseudomonas putida F1 5195464 YP_001268357.1 CDS Pput_3045 NC_009512.1 3428651 3429448 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III complement(3428651..3429448) Pseudomonas putida F1 5190240 YP_001268358.1 CDS Pput_3046 NC_009512.1 3429445 3429687 R hypothetical protein complement(3429445..3429687) Pseudomonas putida F1 5190241 YP_001268359.1 CDS Pput_3047 NC_009512.1 3429753 3430253 R hypothetical protein complement(3429753..3430253) Pseudomonas putida F1 5190876 YP_001268360.1 CDS Pput_3048 NC_009512.1 3430279 3431463 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3430279..3431463) Pseudomonas putida F1 5190877 YP_001268361.1 CDS Pput_3049 NC_009512.1 3431465 3432766 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3431465..3432766) Pseudomonas putida F1 5194878 YP_001268362.1 CDS Pput_3050 NC_009512.1 3433140 3434270 D hypothetical protein 3433140..3434270 Pseudomonas putida F1 5194879 YP_001268363.1 CDS Pput_3051 NC_009512.1 3434247 3435185 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3434247..3435185) Pseudomonas putida F1 5190586 YP_001268364.1 CDS Pput_3052 NC_009512.1 3435272 3435772 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein complement(3435272..3435772) Pseudomonas putida F1 5190587 YP_001268365.1 CDS Pput_3053 NC_009512.1 3436004 3436987 D PFAM: Domain of unknown function DUF1852; hypothetical protein 3436004..3436987 Pseudomonas putida F1 5190328 YP_001268366.1 CDS Pput_3054 NC_009512.1 3437014 3438048 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3437014..3438048 Pseudomonas putida F1 5190329 YP_001268367.1 CDS Pput_3055 NC_009512.1 3438074 3438583 D PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 3438074..3438583 Pseudomonas putida F1 5193440 YP_001268368.1 CDS Pput_3056 NC_009512.1 3438682 3439611 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3438682..3439611 Pseudomonas putida F1 5193441 YP_001268369.1 CDS Pput_3057 NC_009512.1 3439677 3440564 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3439677..3440564) Pseudomonas putida F1 5190962 YP_001268370.1 CDS Pput_3058 NC_009512.1 3440660 3442102 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3440660..3442102 Pseudomonas putida F1 5190963 YP_001268371.1 CDS Pput_3059 NC_009512.1 3442116 3443102 D PFAM: peptidase M19, renal dipeptidase; peptidase M19 3442116..3443102 Pseudomonas putida F1 5193578 YP_001268372.1 CDS Pput_3060 NC_009512.1 3443158 3444708 D PFAM: BCCT transporter; BCCT transporter 3443158..3444708 Pseudomonas putida F1 5193579 YP_001268373.1 CDS Pput_3061 NC_009512.1 3444735 3446429 D hypothetical protein 3444735..3446429 Pseudomonas putida F1 5194872 YP_001268374.1 CDS Pput_3062 NC_009512.1 3446432 3447127 D hypothetical protein 3446432..3447127 Pseudomonas putida F1 5194873 YP_001268375.1 CDS Pput_3063 NC_009512.1 3447155 3447526 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 3447155..3447526 Pseudomonas putida F1 5194485 YP_001268376.1 CDS Pput_3064 NC_009512.1 3447560 3447862 D hypothetical protein 3447560..3447862 Pseudomonas putida F1 5194486 YP_001268377.1 CDS Pput_3065 NC_009512.1 3447960 3449369 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; hypothetical protein 3447960..3449369 Pseudomonas putida F1 5194955 YP_001268378.1 CDS Pput_3066 NC_009512.1 3449373 3450323 D PFAM: protein of unknown function DUF403; hypothetical protein 3449373..3450323 Pseudomonas putida F1 5194956 YP_001268379.1 CDS Pput_3067 NC_009512.1 3450320 3451099 D PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 3450320..3451099 Pseudomonas putida F1 5194610 YP_001268380.1 CDS Pput_3068 NC_009512.1 3451173 3451895 D proteasome-type protease-like protein 3451173..3451895 Pseudomonas putida F1 5194611 YP_001268381.1 CDS Pput_3069 NC_009512.1 3452250 3453653 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; gluconate transporter 3452250..3453653 Pseudomonas putida F1 5192499 YP_001268382.1 CDS Pput_3070 NC_009512.1 3453688 3455037 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3453688..3455037 Pseudomonas putida F1 5192500 YP_001268383.1 CDS Pput_3071 NC_009512.1 3455073 3456011 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3455073..3456011 Pseudomonas putida F1 5194234 YP_001268384.1 CDS Pput_3072 NC_009512.1 3456041 3457408 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(3456041..3457408) Pseudomonas putida F1 5194235 YP_001268385.1 CDS Pput_3073 NC_009512.1 3457559 3458845 D TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; hydroxymethylglutaryl-CoA reductase, degradative 3457559..3458845 Pseudomonas putida F1 5195368 YP_001268386.1 CDS Pput_3074 NC_009512.1 3458842 3459762 D PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase 3458842..3459762 Pseudomonas putida F1 5195369 YP_001268387.1 CDS Pput_3075 NC_009512.1 3459865 3460317 D hypothetical protein 3459865..3460317 Pseudomonas putida F1 5194075 YP_001268388.1 CDS Pput_3076 NC_009512.1 3460317 3461699 D hypothetical protein 3460317..3461699 Pseudomonas putida F1 5194076 YP_001268389.1 CDS Pput_3077 NC_009512.1 3461777 3463027 D PFAM: outer membrane porin; outer membrane porin 3461777..3463027 Pseudomonas putida F1 5194700 YP_001268390.1 CDS Pput_3078 NC_009512.1 3463167 3463910 R hypothetical protein complement(3463167..3463910) Pseudomonas putida F1 5194701 YP_001268391.1 CDS Pput_3079 NC_009512.1 3464409 3466079 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase complement(3464409..3466079) Pseudomonas putida F1 5191179 YP_001268392.1 CDS Pput_3080 NC_009512.1 3466063 3467226 R PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(3466063..3467226) Pseudomonas putida F1 5191180 YP_001268393.1 CDS Pput_3081 NC_009512.1 3467316 3467588 R with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD complement(3467316..3467588) Pseudomonas putida F1 5195396 YP_001268394.1 CDS Pput_3082 NC_009512.1 3467640 3467834 R PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A complement(3467640..3467834) Pseudomonas putida F1 5195397 YP_001268395.1 CDS Pput_3083 NC_009512.1 3467942 3469462 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(3467942..3469462) Pseudomonas putida F1 5191132 YP_001268396.1 CDS Pput_3084 NC_009512.1 3469780 3471567 R PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(3469780..3471567) Pseudomonas putida F1 5191133 YP_001268397.1 CDS Pput_3085 NC_009512.1 3471763 3472686 R PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3471763..3472686) Pseudomonas putida F1 5193067 YP_001268398.1 CDS Pput_3086 NC_009512.1 3472725 3473486 R hypothetical protein complement(3472725..3473486) Pseudomonas putida F1 5193068 YP_001268399.1 CDS Pput_3087 NC_009512.1 3473495 3474370 R SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3473495..3474370) Pseudomonas putida F1 5195111 YP_001268400.1 CDS Pput_3088 NC_009512.1 3474376 3474861 R PFAM: cytochrome c, class I; cytochrome c, class I complement(3474376..3474861) Pseudomonas putida F1 5195112 YP_001268401.1 CDS Pput_3089 NC_009512.1 3475092 3476987 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3475092..3476987 Pseudomonas putida F1 5192031 YP_001268402.1 CDS Pput_3090 NC_009512.1 3477054 3477713 D PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 3477054..3477713 Pseudomonas putida F1 5192032 YP_001268403.1 CDS Pput_3091 NC_009512.1 3477919 3478557 R PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator complement(3477919..3478557) Pseudomonas putida F1 5194299 YP_001268404.1 CDS Pput_3092 NC_009512.1 3478554 3479831 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; integral membrane sensor signal transduction histidine kinase complement(3478554..3479831) Pseudomonas putida F1 5194300 YP_001268405.1 CDS Pput_3093 NC_009512.1 3479982 3481175 D branched chain amino acid ABC transporter substrate-binding protein 3479982..3481175 Pseudomonas putida F1 5195178 YP_001268406.1 CDS Pput_3094 NC_009512.1 3481206 3482195 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 3481206..3482195 Pseudomonas putida F1 5195179 YP_001268407.1 CDS Pput_3095 NC_009512.1 3482192 3482932 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3482192..3482932 Pseudomonas putida F1 5191647 YP_001268408.1 CDS Pput_3096 NC_009512.1 3482929 3483720 D PFAM: ABC-2 type transporter; ABC transporter 3482929..3483720 Pseudomonas putida F1 5191648 YP_001268409.1 CDS Pput_3097 NC_009512.1 3484205 3485014 D PFAM: peptidase C26; peptidase C26 3484205..3485014 Pseudomonas putida F1 5191162 YP_001268410.1 CDS Pput_3098 NC_009512.1 3485389 3486300 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 3485389..3486300 Pseudomonas putida F1 5191163 YP_001268411.1 CDS Pput_3099 NC_009512.1 3486406 3487770 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 3486406..3487770 Pseudomonas putida F1 5190572 YP_001268412.1 CDS Pput_3100 NC_009512.1 3487848 3489401 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; galactarate dehydratase 3487848..3489401 Pseudomonas putida F1 5190573 YP_001268413.1 CDS Pput_3101 NC_009512.1 3489460 3491040 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3489460..3491040 Pseudomonas putida F1 5194467 YP_001268414.1 CDS Pput_3102 NC_009512.1 3491174 3491923 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(3491174..3491923) Pseudomonas putida F1 5194468 YP_001268415.1 CDS Pput_3103 NC_009512.1 3492123 3492773 D hypothetical protein 3492123..3492773 Pseudomonas putida F1 5193488 YP_001268416.1 CDS Pput_3104 NC_009512.1 3492848 3493177 D hypothetical protein 3492848..3493177 Pseudomonas putida F1 5193489 YP_001268417.1 CDS Pput_3105 NC_009512.1 3493339 3494247 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3493339..3494247 Pseudomonas putida F1 5193627 YP_001268418.1 CDS Pput_3106 NC_009512.1 3494248 3494766 R PFAM: protein of unknown function DUF606; hypothetical protein complement(3494248..3494766) Pseudomonas putida F1 5193628 YP_001268419.1 CDS Pput_3107 NC_009512.1 3494943 3495707 D hypothetical protein 3494943..3495707 Pseudomonas putida F1 5194362 YP_001268420.1 CDS Pput_3108 NC_009512.1 3495855 3496436 R hypothetical protein complement(3495855..3496436) Pseudomonas putida F1 5194363 YP_001268421.1 CDS Pput_3109 NC_009512.1 3496653 3498785 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3496653..3498785 Pseudomonas putida F1 5192726 YP_001268422.1 CDS Pput_3110 NC_009512.1 3498870 3500162 R L-sorbosone dehydrogenase complement(3498870..3500162) Pseudomonas putida F1 5192727 YP_001268423.1 CDS Pput_3111 NC_009512.1 3500159 3500554 R hypothetical protein complement(3500159..3500554) Pseudomonas putida F1 5194862 YP_001268424.1 CDS Pput_3112 NC_009512.1 3500751 3501035 D hypothetical protein 3500751..3501035 Pseudomonas putida F1 5194863 YP_001268425.1 CDS Pput_3113 NC_009512.1 3501368 3504358 D hypothetical protein 3501368..3504358 Pseudomonas putida F1 5190548 YP_001268426.1 CDS Pput_3114 NC_009512.1 3504361 3505254 D hypothetical protein 3504361..3505254 Pseudomonas putida F1 5190549 YP_001268427.1 CDS Pput_3115 NC_009512.1 3505251 3505508 D PFAM: PAAR repeat-containing protein; PAAR repeat-containing protein 3505251..3505508 Pseudomonas putida F1 5193912 YP_001268428.1 CDS Pput_3116 NC_009512.1 3505659 3506429 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; beta-ketoadipate pathway transcriptional regulator complement(3505659..3506429) Pseudomonas putida F1 5193913 YP_001268429.1 CDS Pput_3117 NC_009512.1 3506586 3507395 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate dehydrogenase 3506586..3507395 Pseudomonas putida F1 5195451 YP_001268430.1 CDS Pput_3118 NC_009512.1 3507400 3509133 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3507400..3509133 Pseudomonas putida F1 5195452 YP_001268431.1 CDS Pput_3119 NC_009512.1 3509118 3509438 D PFAM: NIPSNAP family containing protein; NIPSNAP family protein 3509118..3509438 Pseudomonas putida F1 5191552 YP_001268432.1 CDS Pput_3120 NC_009512.1 3509480 3511168 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3509480..3511168 Pseudomonas putida F1 5191553 YP_001268433.1 CDS Pput_3121 NC_009512.1 3511411 3512736 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3511411..3512736 Pseudomonas putida F1 5190738 YP_001268434.1 CDS Pput_3122 NC_009512.1 3512891 3513706 R PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(3512891..3513706) Pseudomonas putida F1 5190739 YP_001268435.1 CDS Pput_3123 NC_009512.1 3513736 3514788 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein complement(3513736..3514788) Pseudomonas putida F1 5195541 YP_001268436.1 CDS Pput_3124 NC_009512.1 3514927 3515703 R PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; IclR family transcriptional regulator complement(3514927..3515703) Pseudomonas putida F1 5195542 YP_001268437.1 CDS Pput_3125 NC_009512.1 3515900 3517612 D proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 3515900..3517612 Pseudomonas putida F1 5194163 YP_001268438.1 CDS Pput_3126 NC_009512.1 3517721 3520627 R PFAM: GAF domain protein; histidine kinase, HAMP region domain protein; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(3517721..3520627) Pseudomonas putida F1 5194164 YP_001268439.1 CDS Pput_3127 NC_009512.1 3520780 3522273 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(3520780..3522273) Pseudomonas putida F1 5191512 YP_001268440.1 CDS Pput_3128 NC_009512.1 3522468 3523850 R PFAM: aminotransferase class-III; putative aminotransferase complement(3522468..3523850) Pseudomonas putida F1 5191513 YP_001268441.1 CDS Pput_3129 NC_009512.1 3523893 3524804 R PFAM: regulatory protein, LuxR; LuxR family transcriptional regulator complement(3523893..3524804) Pseudomonas putida F1 5192954 YP_001268442.1 CDS Pput_3130 NC_009512.1 3525018 3526400 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 3525018..3526400 Pseudomonas putida F1 5192955 YP_001268443.1 CDS Pput_3131 NC_009512.1 3526555 3528135 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3526555..3528135 Pseudomonas putida F1 5195101 YP_001268444.1 CDS Pput_3132 NC_009512.1 3528272 3529669 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3528272..3529669 Pseudomonas putida F1 5195102 YP_001268445.1 CDS Pput_3133 NC_009512.1 3529859 3530350 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3529859..3530350) Pseudomonas putida F1 5192006 YP_001268446.1 CDS Pput_3134 NC_009512.1 3530513 3531103 D PFAM: Haem oxygenase; heme oxygenase 3530513..3531103 Pseudomonas putida F1 5192007 YP_001268447.1 CDS Pput_3135 NC_009512.1 3531111 3531677 D hypothetical protein 3531111..3531677 Pseudomonas putida F1 5190399 YP_001268448.1 CDS Pput_3136 NC_009512.1 3531707 3531862 R hypothetical protein complement(3531707..3531862) Pseudomonas putida F1 5190400 YP_001268449.1 CDS Pput_3137 NC_009512.1 3532074 3533828 D PFAM: sulfatase; hypothetical protein 3532074..3533828 Pseudomonas putida F1 5192240 YP_001268450.1 CDS Pput_3138 NC_009512.1 3533839 3534369 R PFAM: protein of unknown function DUF330; hypothetical protein complement(3533839..3534369) Pseudomonas putida F1 5192241 YP_001268451.1 CDS Pput_3139 NC_009512.1 3534381 3536021 R PFAM: Mammalian cell entry related domain protein; hypothetical protein complement(3534381..3536021) Pseudomonas putida F1 5193500 YP_001268452.1 CDS Pput_3140 NC_009512.1 3536021 3536650 R PFAM: Paraquat-inducible protein A; paraquat-inducible protein A complement(3536021..3536650) Pseudomonas putida F1 5193501 YP_001268453.1 CDS Pput_3141 NC_009512.1 3536647 3537243 R PFAM: Paraquat-inducible protein A; paraquat-inducible protein A complement(3536647..3537243) Pseudomonas putida F1 5193590 YP_001268454.1 CDS Pput_3142 NC_009512.1 3537394 3537867 D hypothetical protein 3537394..3537867 Pseudomonas putida F1 5193591 YP_001268455.1 CDS Pput_3143 NC_009512.1 3537917 3538870 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3537917..3538870) Pseudomonas putida F1 5192580 YP_001268456.1 CDS Pput_3144 NC_009512.1 3539100 3539486 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3539100..3539486 Pseudomonas putida F1 5192581 YP_001268457.1 CDS Pput_3145 NC_009512.1 3539528 3540097 D hypothetical protein 3539528..3540097 Pseudomonas putida F1 5190722 YP_001268458.1 CDS Pput_3146 NC_009512.1 3540274 3541953 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter complement(3540274..3541953) Pseudomonas putida F1 5190723 YP_001268459.1 CDS Pput_3147 NC_009512.1 3542215 3542634 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3542215..3542634) Pseudomonas putida F1 5194183 YP_001268460.1 CDS Pput_3148 NC_009512.1 3542710 3543636 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3542710..3543636) Pseudomonas putida F1 5194184 YP_001268461.1 CDS Pput_3149 NC_009512.1 3543666 3548708 D PFAM: leucine-rich repeat protein; hypothetical protein 3543666..3548708 Pseudomonas putida F1 5193588 YP_001268462.1 CDS Pput_3150 NC_009512.1 3548716 3551220 R PFAM: UvrD/REP helicase; UvrD/REP helicase complement(3548716..3551220) Pseudomonas putida F1 5193589 YP_001268463.1 CDS Pput_3151 NC_009512.1 3551406 3552104 D PFAM: Pirin domain protein domain protein; pirin domain-containing protein 3551406..3552104 Pseudomonas putida F1 5190421 YP_001268464.1 CDS Pput_3152 NC_009512.1 3552321 3555092 D TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; amino acid adenylation domain-containing protein 3552321..3555092 Pseudomonas putida F1 5190422 YP_001268465.1 CDS Pput_3153 NC_009512.1 3555120 3555605 R related to nicotinamidase; hypothetical protein complement(3555120..3555605) Pseudomonas putida F1 5190796 YP_001268466.1 CDS Pput_3154 NC_009512.1 3555766 3566625 R PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; heme peroxidase complement(3555766..3566625) Pseudomonas putida F1 5190797 YP_001268467.1 CDS Pput_3155 NC_009512.1 3567138 3568874 D TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 3567138..3568874 Pseudomonas putida F1 5194057 YP_001268468.1 CDS Pput_3156 NC_009512.1 3568881 3570221 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 3568881..3570221 Pseudomonas putida F1 5194058 YP_001268469.1 CDS Pput_3157 NC_009512.1 3570223 3571551 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 3570223..3571551 Pseudomonas putida F1 5190814 YP_001268470.1 CDS Pput_3158 NC_009512.1 3571767 3572630 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3571767..3572630 Pseudomonas putida F1 5190815 YP_001268471.1 CDS Pput_3159 NC_009512.1 3572648 3574000 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 3572648..3574000 Pseudomonas putida F1 5192382 YP_001268472.1 CDS Pput_3160 NC_009512.1 3574012 3574680 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3574012..3574680 Pseudomonas putida F1 5192383 YP_001268473.1 CDS Pput_3161 NC_009512.1 3574749 3576656 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; 4-hydroxyphenylpyruvate dioxygenase complement(3574749..3576656) Pseudomonas putida F1 5193303 YP_001268474.1 CDS Pput_3162 NC_009512.1 3576946 3578319 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3576946..3578319 Pseudomonas putida F1 5193304 YP_001268475.1 CDS Pput_3163 NC_009512.1 3578433 3579869 R PFAM: Pyridoxal-dependent decarboxylase; aromatic-L-amino-acid decarboxylase complement(3578433..3579869) Pseudomonas putida F1 5193344 YP_001268476.1 CDS Pput_3164 NC_009512.1 3579994 3580938 R PFAM: regulatory protein, LysR; LysR, substrate-binding; Helix-turn-helix, type 11 domain protein; LysR family transcriptional regulator complement(3579994..3580938) Pseudomonas putida F1 5193345 YP_001268477.1 CDS Pput_3165 NC_009512.1 3581076 3581789 R PFAM: protein of unknown function DUF28; hypothetical protein complement(3581076..3581789) Pseudomonas putida F1 5190415 YP_001268478.1 CDS Pput_3166 NC_009512.1 3581887 3583278 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3581887..3583278) Pseudomonas putida F1 5190416 YP_001268479.1 CDS Pput_3167 NC_009512.1 3583293 3584609 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3583293..3584609) Pseudomonas putida F1 5192279 YP_001268480.1 CDS Pput_3168 NC_009512.1 3584853 3585749 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3584853..3585749 Pseudomonas putida F1 5192280 YP_001268481.1 CDS Pput_3169 NC_009512.1 3585774 3586145 D hypothetical protein 3585774..3586145 Pseudomonas putida F1 5193681 YP_001268482.1 CDS Pput_3170 NC_009512.1 3586135 3586911 R PFAM: Methyltransferase type 11; Methyltransferase type 12; trans-aconitate 2-methyltransferase complement(3586135..3586911) Pseudomonas putida F1 5193682 YP_001268483.1 CDS Pput_3171 NC_009512.1 3587209 3588621 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(3587209..3588621) Pseudomonas putida F1 5190905 YP_001268484.1 CDS Pput_3172 NC_009512.1 3588947 3590371 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3588947..3590371 Pseudomonas putida F1 5190906 YP_001268485.1 CDS Pput_3174 NC_009512.1 3591129 3591419 D hypothetical protein 3591129..3591419 Pseudomonas putida F1 5192482 YP_001268486.1 CDS Pput_3176 NC_009512.1 3591755 3592318 D hypothetical protein 3591755..3592318 Pseudomonas putida F1 5192483 YP_001268487.1 CDS Pput_3177 NC_009512.1 3592330 3593106 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3592330..3593106) Pseudomonas putida F1 5191958 YP_001268488.1 CDS Pput_3178 NC_009512.1 3593274 3594200 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3593274..3594200) Pseudomonas putida F1 5191959 YP_001268489.1 CDS Pput_3179 NC_009512.1 3594327 3595034 R hypothetical protein complement(3594327..3595034) Pseudomonas putida F1 5195187 YP_001268490.1 CDS Pput_3180 NC_009512.1 3595129 3595431 R hypothetical protein complement(3595129..3595431) Pseudomonas putida F1 5195188 YP_001268491.1 CDS Pput_3181 NC_009512.1 3595630 3596253 D PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3595630..3596253 Pseudomonas putida F1 5190792 YP_001268492.1 CDS Pput_3182 NC_009512.1 3596307 3597482 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3596307..3597482) Pseudomonas putida F1 5190793 YP_001268493.1 CDS Pput_3183 NC_009512.1 3597577 3598476 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3597577..3598476 Pseudomonas putida F1 5190974 YP_001268494.1 CDS Pput_3184 NC_009512.1 3598526 3599149 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(3598526..3599149) Pseudomonas putida F1 5190975 YP_001268495.1 CDS Pput_3185 NC_009512.1 3599279 3600961 D PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase 3 3599279..3600961 Pseudomonas putida F1 5194622 YP_001268496.1 CDS Pput_3186 NC_009512.1 3600976 3602133 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3600976..3602133 Pseudomonas putida F1 5194623 YP_001268497.1 CDS Pput_3187 NC_009512.1 3602244 3603221 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 3602244..3603221 Pseudomonas putida F1 5190336 YP_001268498.1 CDS Pput_3188 NC_009512.1 3603246 3603671 R hypothetical protein complement(3603246..3603671) Pseudomonas putida F1 5190337 YP_001268499.1 CDS Pput_3189 NC_009512.1 3603874 3604869 D PFAM: 5-nucleotidase; 5'-nucleotidase 3603874..3604869 Pseudomonas putida F1 5193169 YP_001268500.1 CDS Pput_3190 NC_009512.1 3604983 3605240 R hypothetical protein complement(3604983..3605240) Pseudomonas putida F1 5193170 YP_001268501.1 CDS Pput_3191 NC_009512.1 3605365 3606642 D catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 3605365..3606642 Pseudomonas putida F1 5194608 YP_001268502.1 CDS Pput_3192 NC_009512.1 3606708 3607472 D hypothetical protein 3606708..3607472 Pseudomonas putida F1 5194609 YP_001268503.1 CDS Pput_3193 NC_009512.1 3607554 3608027 R hypothetical protein complement(3607554..3608027) Pseudomonas putida F1 5190452 YP_001268504.1 CDS Pput_3194 NC_009512.1 3608174 3609337 D ATPase-like protein 3608174..3609337 Pseudomonas putida F1 5190453 YP_001268505.1 CDS Pput_3195 NC_009512.1 3609366 3610106 R PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(3609366..3610106) Pseudomonas putida F1 5193340 YP_001268506.1 CDS Pput_3196 NC_009512.1 3610276 3612687 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3610276..3612687 Pseudomonas putida F1 5193341 YP_001268507.1 CDS Pput_3197 NC_009512.1 3612727 3613635 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3612727..3613635) Pseudomonas putida F1 5192915 YP_001268508.1 CDS Pput_3198 NC_009512.1 3613714 3613839 R hypothetical protein complement(3613714..3613839) Pseudomonas putida F1 5192916 YP_001268509.1 CDS Pput_3199 NC_009512.1 3614027 3615376 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3614027..3615376 Pseudomonas putida F1 5190878 YP_001268510.1 CDS Pput_3200 NC_009512.1 3615398 3616660 D extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase 3615398..3616660 Pseudomonas putida F1 5190879 YP_001268511.1 CDS Pput_3201 NC_009512.1 3616792 3618039 D PFAM: outer membrane porin; outer membrane porin 3616792..3618039 Pseudomonas putida F1 5194073 YP_001268512.1 CDS Pput_3202 NC_009512.1 3618055 3619248 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3618055..3619248) Pseudomonas putida F1 5194074 YP_001268513.1 CDS Pput_3203 NC_009512.1 3619408 3620142 D PFAM: LmbE family protein; LmbE family protein 3619408..3620142 Pseudomonas putida F1 5193148 YP_001268514.1 CDS Pput_3204 NC_009512.1 3620139 3620855 D TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 3620139..3620855 Pseudomonas putida F1 5193149 YP_001268515.1 CDS Pput_3205 NC_009512.1 3620858 3621943 D PFAM: protein of unknown function DUF453; hypothetical protein 3620858..3621943 Pseudomonas putida F1 5195017 YP_001268516.1 CDS Pput_3206 NC_009512.1 3621967 3622425 R hypothetical protein complement(3621967..3622425) Pseudomonas putida F1 5195018 YP_001268517.1 CDS Pput_3207 NC_009512.1 3622496 3623056 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(3622496..3623056) Pseudomonas putida F1 5192879 YP_001268518.1 CDS Pput_3208 NC_009512.1 3623041 3623454 R PFAM: putative thiol-disulphide oxidoreductase DCC; putative thiol-disulfide oxidoreductase DCC complement(3623041..3623454) Pseudomonas putida F1 5192880 YP_001268519.1 CDS Pput_3209 NC_009512.1 3623603 3624379 R hypothetical protein complement(3623603..3624379) Pseudomonas putida F1 5191002 YP_001268520.1 CDS Pput_3210 NC_009512.1 3624436 3624714 D hypothetical protein 3624436..3624714 Pseudomonas putida F1 5191003 YP_001268521.1 CDS Pput_3211 NC_009512.1 3625200 3625442 D hypothetical protein 3625200..3625442 Pseudomonas putida F1 5192780 YP_001268522.1 CDS Pput_3212 NC_009512.1 3625594 3625857 D hypothetical protein 3625594..3625857 Pseudomonas putida F1 5192781 YP_001268523.1 CDS Pput_3213 NC_009512.1 3625918 3626472 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3625918..3626472) Pseudomonas putida F1 5194146 YP_001268524.1 CDS Pput_3214 NC_009512.1 3626571 3627377 R PFAM: HNH endonuclease; HNH endonuclease complement(3626571..3627377) Pseudomonas putida F1 5194147 YP_001268525.1 CDS Pput_3215 NC_009512.1 3627776 3628492 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3627776..3628492) Pseudomonas putida F1 5194438 YP_001268526.1 CDS Pput_3216 NC_009512.1 3628538 3629023 R hypothetical protein complement(3628538..3629023) Pseudomonas putida F1 5194439 YP_001268527.1 CDS Pput_3217 NC_009512.1 3629390 3630427 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; diguanylate cyclase 3629390..3630427 Pseudomonas putida F1 5191655 YP_001268528.1 CDS Pput_3218 NC_009512.1 3631001 3631357 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(3631001..3631357) Pseudomonas putida F1 5192438 YP_001268529.1 CDS ihfA NC_009512.1 3631338 3631640 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3631338..3631640) Pseudomonas putida F1 5195092 YP_001268530.1 CDS pheT NC_009512.1 3631645 3634026 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3631645..3634026) Pseudomonas putida F1 5195093 YP_001268531.1 CDS pheS NC_009512.1 3634058 3635074 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3634058..3635074) Pseudomonas putida F1 5193512 YP_001268532.1 CDS rplT NC_009512.1 3635184 3635540 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3635184..3635540) Pseudomonas putida F1 5193513 YP_001268533.1 CDS rpmI NC_009512.1 3635568 3635762 R PFAM: ribosomal protein L35; 50S ribosomal protein L35 complement(3635568..3635762) Pseudomonas putida F1 5195048 YP_001268534.1 CDS infC NC_009512.1 3635823 3636374 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(3635823..3636374) Pseudomonas putida F1 5195049 YP_001268535.1 CDS thrS NC_009512.1 3636374 3638296 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(3636374..3638296) Pseudomonas putida F1 5190286 YP_001268536.1 CDS Pput_3226 NC_009512.1 3638635 3638940 D hypothetical protein 3638635..3638940 Pseudomonas putida F1 5190287 YP_001268537.1 CDS Pput_3227 NC_009512.1 3639103 3639315 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3639103..3639315 Pseudomonas putida F1 5191670 YP_001268538.1 CDS Pput_3228 NC_009512.1 3639516 3639836 R hypothetical protein complement(3639516..3639836) Pseudomonas putida F1 5191671 YP_001268539.1 CDS Pput_3229 NC_009512.1 3640111 3640323 D hypothetical protein 3640111..3640323 Pseudomonas putida F1 5191100 YP_001268540.1 CDS Pput_3230 NC_009512.1 3640295 3641296 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(3640295..3641296) Pseudomonas putida F1 5191101 YP_001268541.1 CDS Pput_3231 NC_009512.1 3641361 3641759 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(3641361..3641759) Pseudomonas putida F1 5194324 YP_001268542.1 CDS Pput_3232 NC_009512.1 3641756 3642664 R TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; ribokinase complement(3641756..3642664) Pseudomonas putida F1 5194325 YP_001268543.1 CDS Pput_3233 NC_009512.1 3642680 3643702 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase complement(3642680..3643702) Pseudomonas putida F1 5193508 YP_001268544.1 CDS Pput_3234 NC_009512.1 3643707 3644702 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(3643707..3644702) Pseudomonas putida F1 5193509 YP_001268545.1 CDS Pput_3235 NC_009512.1 3644699 3646252 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3644699..3646252) Pseudomonas putida F1 5193156 YP_001268546.1 CDS Pput_3236 NC_009512.1 3646273 3647232 R PFAM: periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase complement(3646273..3647232) Pseudomonas putida F1 5193157 YP_001268547.1 CDS Pput_3237 NC_009512.1 3647600 3648688 D TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase 3647600..3648688 Pseudomonas putida F1 5194909 YP_001268548.1 CDS Pput_3238 NC_009512.1 3648812 3650686 R TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; putative PAS/PAC sensor protein complement(3648812..3650686) Pseudomonas putida F1 5194910 YP_001268549.1 CDS Pput_3239 NC_009512.1 3650887 3651327 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 3650887..3651327 Pseudomonas putida F1 5191640 YP_001268550.1 CDS Pput_3240 NC_009512.1 3651391 3652215 D PFAM: formate/nitrite transporter; formate/nitrite transporter 3651391..3652215 Pseudomonas putida F1 5191641 YP_001268551.1 CDS Pput_3241 NC_009512.1 3652406 3652678 D PFAM: protein of unknown function DUF1654; hypothetical protein 3652406..3652678 Pseudomonas putida F1 5194874 YP_001268552.1 CDS Pput_3242 NC_009512.1 3652685 3653377 D PFAM: Endonuclease I; deoxyribonuclease I 3652685..3653377 Pseudomonas putida F1 5194875 YP_001268553.1 CDS Pput_3243 NC_009512.1 3653381 3653827 R hypothetical protein complement(3653381..3653827) Pseudomonas putida F1 5190653 YP_001268554.1 CDS Pput_3244 NC_009512.1 3653985 3654554 R PFAM: Sporulation domain protein; sporulation domain-containing protein complement(3653985..3654554) Pseudomonas putida F1 5190654 YP_001268555.1 CDS Pput_3245 NC_009512.1 3655215 3656498 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3655215..3656498 Pseudomonas putida F1 5194187 YP_001268556.1 CDS Pput_3246 NC_009512.1 3656610 3657344 R hypothetical protein complement(3656610..3657344) Pseudomonas putida F1 5191758 YP_001268557.1 CDS Pput_3247 NC_009512.1 3657511 3657684 D hypothetical protein 3657511..3657684 Pseudomonas putida F1 5192361 YP_001268558.1 CDS Pput_3248 NC_009512.1 3657814 3658566 R PFAM: Integral membrane protein TerC; integral membrane protein TerC complement(3657814..3658566) Pseudomonas putida F1 5192362 YP_001268559.1 CDS Pput_3249 NC_009512.1 3658595 3658867 R hypothetical protein complement(3658595..3658867) Pseudomonas putida F1 5190511 YP_001268560.1 CDS Pput_3250 NC_009512.1 3658967 3659860 D PFAM: regulatory protein, LysR; LysR family transcriptional regulator 3658967..3659860 Pseudomonas putida F1 5190512 YP_001268561.1 CDS Pput_3251 NC_009512.1 3659958 3661169 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3659958..3661169 Pseudomonas putida F1 5193002 YP_001268562.1 CDS Pput_3252 NC_009512.1 3661258 3661902 D PFAM: protein of unknown function DUF480; hypothetical protein 3661258..3661902 Pseudomonas putida F1 5193003 YP_001268563.1 CDS Pput_3253 NC_009512.1 3661907 3662095 R hypothetical protein complement(3661907..3662095) Pseudomonas putida F1 5192550 YP_001268564.1 CDS Pput_3254 NC_009512.1 3662185 3662391 R hypothetical protein complement(3662185..3662391) Pseudomonas putida F1 5192551 YP_001268565.1 CDS Pput_3255 NC_009512.1 3662413 3663975 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alkyl hydroperoxide reductase subunit F complement(3662413..3663975) Pseudomonas putida F1 5191642 YP_001268566.1 CDS Pput_3256 NC_009512.1 3664100 3664663 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase complement(3664100..3664663) Pseudomonas putida F1 5191643 YP_001268567.1 CDS Pput_3257 NC_009512.1 3664985 3666049 D PFAM: Integral membrane protein TerC; integral membrane protein TerC 3664985..3666049 Pseudomonas putida F1 5190984 YP_001268568.1 CDS Pput_3258 NC_009512.1 3666145 3667374 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(3666145..3667374) Pseudomonas putida F1 5190985 YP_001268569.1 CDS Pput_3259 NC_009512.1 3667515 3668438 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3667515..3668438 Pseudomonas putida F1 5195272 YP_001268570.1 CDS Pput_3260 NC_009512.1 3668590 3669786 D PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; class V aminotransferase 3668590..3669786 Pseudomonas putida F1 5195273 YP_001268571.1 CDS Pput_3261 NC_009512.1 3669955 3670392 R PFAM: RES; RES domain-containing protein complement(3669955..3670392) Pseudomonas putida F1 5194095 YP_001268572.1 CDS Pput_3262 NC_009512.1 3670389 3670964 R hypothetical protein complement(3670389..3670964) Pseudomonas putida F1 5194096 YP_001268573.1 CDS Pput_3263 NC_009512.1 3670981 3671634 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(3670981..3671634) Pseudomonas putida F1 5190852 YP_001268574.1 CDS Pput_3264 NC_009512.1 3671732 3672661 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3671732..3672661 Pseudomonas putida F1 5190853 YP_001268575.1 CDS Pput_3265 NC_009512.1 3672710 3673540 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3672710..3673540 Pseudomonas putida F1 5190848 YP_001268576.1 CDS Pput_3266 NC_009512.1 3673592 3674176 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3673592..3674176 Pseudomonas putida F1 5190849 YP_001268577.1 CDS Pput_3267 NC_009512.1 3674216 3675457 R PFAM: major facilitator superfamily MFS_1; sugar efflux transporter complement(3674216..3675457) Pseudomonas putida F1 5192803 YP_001268578.1 CDS Pput_3268 NC_009512.1 3675621 3676937 D hypothetical protein 3675621..3676937 Pseudomonas putida F1 5192804 YP_001268579.1 CDS Pput_3269 NC_009512.1 3677048 3678100 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(3677048..3678100) Pseudomonas putida F1 5191683 YP_001268580.1 CDS Pput_3270 NC_009512.1 3678282 3679187 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator 3678282..3679187 Pseudomonas putida F1 5191684 YP_001268581.1 CDS Pput_3271 NC_009512.1 3679251 3679796 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase, HXTX; 2'-5' RNA ligase complement(3679251..3679796) Pseudomonas putida F1 5191899 YP_001268582.1 CDS Pput_3272 NC_009512.1 3679955 3680854 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 3679955..3680854 Pseudomonas putida F1 5191900 YP_001268583.1 CDS Pput_3273 NC_009512.1 3680973 3681317 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3680973..3681317 Pseudomonas putida F1 5194031 YP_001268584.1 CDS Pput_3274 NC_009512.1 3681396 3681965 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3681396..3681965 Pseudomonas putida F1 5194032 YP_001268585.1 CDS Pput_3275 NC_009512.1 3682336 3684564 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3682336..3684564 Pseudomonas putida F1 5190818 YP_001268586.1 CDS Pput_3276 NC_009512.1 3684682 3685848 D hypothetical protein 3684682..3685848 Pseudomonas putida F1 5190819 YP_001268587.1 CDS Pput_3277 NC_009512.1 3686186 3687196 D PFAM: periplasmic binding protein; periplasmic binding protein 3686186..3687196 Pseudomonas putida F1 5190433 YP_001268588.1 CDS Pput_3278 NC_009512.1 3687196 3688212 D PFAM: transport system permease protein; ABC-3 protein; transport system permease 3687196..3688212 Pseudomonas putida F1 5190434 YP_001268589.1 CDS Pput_3279 NC_009512.1 3688209 3688997 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3688209..3688997 Pseudomonas putida F1 5190964 YP_001268590.1 CDS Pput_3280 NC_009512.1 3689054 3689551 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3689054..3689551) Pseudomonas putida F1 5190965 YP_001268591.1 CDS Pput_3281 NC_009512.1 3689685 3690164 D hypothetical protein 3689685..3690164 Pseudomonas putida F1 5193933 YP_001268592.1 CDS Pput_3282 NC_009512.1 3690224 3691795 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; Cache domain protein; diguanylate cyclase 3690224..3691795 Pseudomonas putida F1 5193934 YP_001268593.1 CDS Pput_3283 NC_009512.1 3691939 3692730 D PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3691939..3692730 Pseudomonas putida F1 5192724 YP_001268594.1 CDS Pput_3284 NC_009512.1 3692911 3694248 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 3692911..3694248 Pseudomonas putida F1 5192725 YP_001268595.1 CDS Pput_3285 NC_009512.1 3694281 3697427 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein complement(3694281..3697427) Pseudomonas putida F1 5194107 YP_001268596.1 CDS Pput_3286 NC_009512.1 3697444 3698658 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(3697444..3698658) Pseudomonas putida F1 5194108 YP_001268597.1 CDS Pput_3287 NC_009512.1 3698651 3700045 R PFAM: outer membrane efflux protein; outer membrane efflux protein complement(3698651..3700045) Pseudomonas putida F1 5195467 YP_001268598.1 CDS Pput_3288 NC_009512.1 3700158 3700616 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3700158..3700616 Pseudomonas putida F1 5195468 YP_001268599.1 CDS Pput_3289 NC_009512.1 3700613 3701461 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3700613..3701461 Pseudomonas putida F1 5194144 YP_001268600.1 CDS Pput_3290 NC_009512.1 3701580 3702116 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein complement(3701580..3702116) Pseudomonas putida F1 5194145 YP_001268601.1 CDS Pput_3291 NC_009512.1 3702106 3702402 R hypothetical protein complement(3702106..3702402) Pseudomonas putida F1 5190357 YP_001268602.1 CDS Pput_3292 NC_009512.1 3702602 3703342 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3702602..3703342 Pseudomonas putida F1 5190358 YP_001268603.1 CDS Pput_3293 NC_009512.1 3703339 3704625 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3703339..3704625 Pseudomonas putida F1 5193566 YP_001268604.1 CDS Pput_3294 NC_009512.1 3704790 3705407 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; ferric reductase domain-containing protein 3704790..3705407 Pseudomonas putida F1 5193567 YP_001268605.1 CDS Pput_3295 NC_009512.1 3705422 3705910 D PFAM: DoxX family protein; DoxX family protein 3705422..3705910 Pseudomonas putida F1 5191805 YP_001268606.1 CDS Pput_3296 NC_009512.1 3705944 3706639 R hypothetical protein complement(3705944..3706639) Pseudomonas putida F1 5191806 YP_001268607.1 CDS Pput_3297 NC_009512.1 3706632 3707465 R PFAM: protein of unknown function DUF692; hypothetical protein complement(3706632..3707465) Pseudomonas putida F1 5190594 YP_001268608.1 CDS Pput_3298 NC_009512.1 3707540 3708196 R hypothetical protein complement(3707540..3708196) Pseudomonas putida F1 5190595 YP_001268609.1 CDS Pput_3299 NC_009512.1 3708206 3708757 R hypothetical protein complement(3708206..3708757) Pseudomonas putida F1 5193010 YP_001268610.1 CDS Pput_3300 NC_009512.1 3708986 3713476 R PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein complement(3708986..3713476) Pseudomonas putida F1 5193011 YP_001268611.1 CDS Pput_3301 NC_009512.1 3713574 3717995 R PFAM: leucine-rich repeat protein; hypothetical protein complement(3713574..3717995) Pseudomonas putida F1 5192913 YP_001268612.1 CDS Pput_3302 NC_009512.1 3718074 3720434 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II complement(3718074..3720434) Pseudomonas putida F1 5192914 YP_001268613.1 CDS Pput_3303 NC_009512.1 3720501 3721691 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3720501..3721691) Pseudomonas putida F1 5195027 YP_001268614.1 CDS Pput_3304 NC_009512.1 3721764 3722705 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3721764..3722705 Pseudomonas putida F1 5195028 YP_001268615.1 CDS Pput_3305 NC_009512.1 3722686 3723606 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3722686..3723606) Pseudomonas putida F1 5195521 YP_001268616.1 CDS Pput_3306 NC_009512.1 3723767 3724555 D PFAM: Protein of unknown function, YqcI/YcgG; hypothetical protein 3723767..3724555 Pseudomonas putida F1 5195522 YP_001268617.1 CDS Pput_3307 NC_009512.1 3724558 3725184 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3724558..3725184 Pseudomonas putida F1 5193504 YP_001268618.1 CDS Pput_3308 NC_009512.1 3725224 3726306 D hypothetical protein 3725224..3726306 Pseudomonas putida F1 5193505 YP_001268619.1 CDS Pput_3309 NC_009512.1 3726439 3727140 D hypothetical protein 3726439..3727140 Pseudomonas putida F1 5190537 YP_001268620.1 CDS Pput_3310 NC_009512.1 3727288 3727980 D PFAM: AzlC family protein; AzlC family protein 3727288..3727980 Pseudomonas putida F1 5190538 YP_001268621.1 CDS Pput_3311 NC_009512.1 3727977 3728291 D PFAM: branched-chain amino acid transport; branched-chain amino acid transport 3727977..3728291 Pseudomonas putida F1 5190808 YP_001268622.1 CDS Pput_3312 NC_009512.1 3728288 3729133 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3728288..3729133 Pseudomonas putida F1 5190809 YP_001268623.1 CDS Pput_3313 NC_009512.1 3729182 3730399 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3729182..3730399) Pseudomonas putida F1 5193883 YP_001268624.1 CDS Pput_3314 NC_009512.1 3730856 3731083 D hypothetical protein 3730856..3731083 Pseudomonas putida F1 5193884 YP_001268625.1 CDS Pput_3315 NC_009512.1 3731131 3731613 R PFAM: protein of unknown function DUF461; hypothetical protein complement(3731131..3731613) Pseudomonas putida F1 5194795 YP_001268626.1 CDS Pput_3316 NC_009512.1 3731614 3732285 R PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(3731614..3732285) Pseudomonas putida F1 5194796 YP_001268627.1 CDS Pput_3317 NC_009512.1 3732419 3733003 R PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; HesB/YadR/YfhF-family protein complement(3732419..3733003) Pseudomonas putida F1 5195465 YP_001268628.1 CDS Pput_3318 NC_009512.1 3733062 3734096 R PFAM: acyltransferase 3; acyltransferase 3 complement(3733062..3734096) Pseudomonas putida F1 5195466 YP_001268629.1 CDS Pput_3319 NC_009512.1 3734292 3736679 R PFAM: fatty acid cistrans isomerase; fatty acid cistrans isomerase complement(3734292..3736679) Pseudomonas putida F1 5194065 YP_001268630.1 CDS metH NC_009512.1 3736776 3740483 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 3736776..3740483 Pseudomonas putida F1 5194066 YP_001268631.1 CDS Pput_3321 NC_009512.1 3740653 3740868 D hypothetical protein 3740653..3740868 Pseudomonas putida F1 5193856 YP_001268632.1 CDS Pput_3322 NC_009512.1 3741029 3741142 R hypothetical protein complement(3741029..3741142) Pseudomonas putida F1 5193857 YP_001268633.1 CDS Pput_3323 NC_009512.1 3741228 3742304 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(3741228..3742304) Pseudomonas putida F1 5192685 YP_001268634.1 CDS Pput_3324 NC_009512.1 3742518 3744170 D PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase (ferredoxin) 3742518..3744170 Pseudomonas putida F1 5192686 YP_001268635.1 CDS Pput_3325 NC_009512.1 3744154 3744648 D PFAM: uncharacterised conserved protein UCP030820; hypothetical protein 3744154..3744648 Pseudomonas putida F1 5191523 YP_001268636.1 CDS Pput_3326 NC_009512.1 3744695 3748882 R PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein complement(3744695..3748882) Pseudomonas putida F1 5191524 YP_001268637.1 CDS dkgB NC_009512.1 3749086 3749889 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 3749086..3749889 Pseudomonas putida F1 5193376 YP_001268638.1 CDS Pput_3328 NC_009512.1 3749895 3751082 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3749895..3751082 Pseudomonas putida F1 5193377 YP_001268639.1 CDS Pput_3329 NC_009512.1 3751245 3752477 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3751245..3752477 Pseudomonas putida F1 5194761 YP_001268640.1 CDS Pput_3330 NC_009512.1 3752514 3753287 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3752514..3753287 Pseudomonas putida F1 5194762 YP_001268641.1 CDS Pput_3331 NC_009512.1 3753429 3754577 D PFAM: peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 3753429..3754577 Pseudomonas putida F1 5195233 YP_001268642.1 CDS Pput_3332 NC_009512.1 3754654 3755625 R PFAM: Spore coat U domain protein; spore coat U domain-containing protein complement(3754654..3755625) Pseudomonas putida F1 5195234 YP_001268643.1 CDS Pput_3333 NC_009512.1 3755622 3758015 R PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein complement(3755622..3758015) Pseudomonas putida F1 5195000 YP_001268644.1 CDS Pput_3334 NC_009512.1 3758028 3758804 R type 1 pili usher pathway chaperone CsuC complement(3758028..3758804) Pseudomonas putida F1 5195001 YP_001268645.1 CDS Pput_3335 NC_009512.1 3758845 3759348 R PFAM: Spore coat U domain protein; spore coat U domain-containing protein complement(3758845..3759348) Pseudomonas putida F1 5190507 YP_001268646.1 CDS Pput_3336 NC_009512.1 3759352 3759885 R PFAM: Spore coat U domain protein; spore coat U domain-containing protein complement(3759352..3759885) Pseudomonas putida F1 5190508 YP_001268647.1 CDS Pput_3337 NC_009512.1 3759904 3760440 R PFAM: Spore coat U domain protein; spore coat U domain-containing protein complement(3759904..3760440) Pseudomonas putida F1 5191072 YP_001268648.1 CDS Pput_3338 NC_009512.1 3760471 3761064 R PFAM: Spore coat U domain protein; spore coat U domain-containing protein complement(3760471..3761064) Pseudomonas putida F1 5191073 YP_001268649.1 CDS Pput_3339 NC_009512.1 3761266 3763512 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Phytochrome, central region domain protein; PAS fold-2 domain protein; multi-sensor signal transduction histidine kinase 3761266..3763512 Pseudomonas putida F1 5195332 YP_001268650.1 CDS Pput_3340 NC_009512.1 3763528 3763989 D PFAM: response regulator receiver; response regulator receiver protein 3763528..3763989 Pseudomonas putida F1 5195333 YP_001268651.1 CDS Pput_3341 NC_009512.1 3764003 3766390 D TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3764003..3766390 Pseudomonas putida F1 5190588 YP_001268652.1 CDS Pput_3342 NC_009512.1 3766848 3767090 D hypothetical protein 3766848..3767090 Pseudomonas putida F1 5193935 YP_001268653.1 CDS Pput_3343 NC_009512.1 3767223 3768296 D PFAM: AFG1-family ATPase; AFG1 family ATPase 3767223..3768296 Pseudomonas putida F1 5191890 YP_001268654.1 CDS Pput_3344 NC_009512.1 3768400 3769626 D hypothetical protein 3768400..3769626 Pseudomonas putida F1 5191891 YP_001268655.1 CDS Pput_3345 NC_009512.1 3769715 3771604 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3769715..3771604) Pseudomonas putida F1 5194181 YP_001268656.1 CDS Pput_3346 NC_009512.1 3771785 3772651 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3771785..3772651 Pseudomonas putida F1 5194182 YP_001268657.1 CDS Pput_3347 NC_009512.1 3772625 3773779 R PFAM: CBS domain containing protein; HPP family protein+B94; hypothetical protein complement(3772625..3773779) Pseudomonas putida F1 5195386 YP_001268658.1 CDS Pput_3348 NC_009512.1 3774099 3775418 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; integral membrane sensor signal transduction histidine kinase complement(3774099..3775418) Pseudomonas putida F1 5195387 YP_001268659.1 CDS Pput_3349 NC_009512.1 3775415 3776083 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(3775415..3776083) Pseudomonas putida F1 5193071 YP_001268660.1 CDS Pput_3350 NC_009512.1 3776084 3776398 R PFAM: Propeptide, PepSY amd peptidase M4; peptidase complement(3776084..3776398) Pseudomonas putida F1 5193072 YP_001268661.1 CDS Pput_3351 NC_009512.1 3776398 3776706 R PFAM: Propeptide, PepSY amd peptidase M4; peptidase complement(3776398..3776706) Pseudomonas putida F1 5194217 YP_001268662.1 CDS Pput_3352 NC_009512.1 3776848 3778005 D hypothetical protein 3776848..3778005 Pseudomonas putida F1 5194218 YP_001268663.1 CDS Pput_3353 NC_009512.1 3778241 3779422 D PFAM: phage integrase family protein; phage integrase family protein 3778241..3779422 Pseudomonas putida F1 5195380 YP_001268664.1 CDS Pput_3354 NC_009512.1 3779408 3779701 R hypothetical protein complement(3779408..3779701) Pseudomonas putida F1 5195381 YP_001268665.1 CDS Pput_3355 NC_009512.1 3779698 3779991 R hypothetical protein complement(3779698..3779991) Pseudomonas putida F1 5195088 YP_001268666.1 CDS Pput_3356 NC_009512.1 3780065 3780289 R hypothetical protein complement(3780065..3780289) Pseudomonas putida F1 5195089 YP_001268667.1 CDS Pput_3357 NC_009512.1 3780536 3781120 D hypothetical protein 3780536..3781120 Pseudomonas putida F1 5191480 YP_001268668.1 CDS Pput_3358 NC_009512.1 3781173 3782039 D hypothetical protein 3781173..3782039 Pseudomonas putida F1 5191481 YP_001268669.1 CDS Pput_3359 NC_009512.1 3782378 3782878 R hypothetical protein complement(3782378..3782878) Pseudomonas putida F1 5194616 YP_001268670.1 CDS Pput_3360 NC_009512.1 3782875 3783324 R hypothetical protein complement(3782875..3783324) Pseudomonas putida F1 5194617 YP_001268671.1 CDS Pput_3361 NC_009512.1 3783421 3784230 R hypothetical protein complement(3783421..3784230) Pseudomonas putida F1 5194275 YP_001268672.1 CDS Pput_3362 NC_009512.1 3784255 3786192 R hypothetical protein complement(3784255..3786192) Pseudomonas putida F1 5194276 YP_001268673.1 CDS Pput_3363 NC_009512.1 3786248 3789301 R hypothetical protein complement(3786248..3789301) Pseudomonas putida F1 5192885 YP_001268674.1 CDS Pput_3364 NC_009512.1 3789298 3789675 R hypothetical protein complement(3789298..3789675) Pseudomonas putida F1 5192886 YP_001268675.1 CDS Pput_3365 NC_009512.1 3789678 3790157 R PFAM: Domain of unknown function DUF1833; hypothetical protein complement(3789678..3790157) Pseudomonas putida F1 5195309 YP_001268676.1 CDS Pput_3366 NC_009512.1 3790154 3790624 R hypothetical protein complement(3790154..3790624) Pseudomonas putida F1 5195310 YP_001268677.1 CDS Pput_3367 NC_009512.1 3790812 3793724 R PFAM: Prophage tail length tape measure; prophage tail length tape measure complement(3790812..3793724) Pseudomonas putida F1 5194720 YP_001268678.1 CDS Pput_3368 NC_009512.1 3793780 3794199 R hypothetical protein complement(3793780..3794199) Pseudomonas putida F1 5194721 YP_001268679.1 CDS Pput_3369 NC_009512.1 3794627 3795112 R hypothetical protein complement(3794627..3795112) Pseudomonas putida F1 5191342 YP_001268680.1 CDS Pput_3370 NC_009512.1 3795170 3796339 R PFAM: Ig domain protein, group 2 domain protein; Ig domain-containing protein complement(3795170..3796339) Pseudomonas putida F1 5191343 YP_001268681.1 CDS Pput_3371 NC_009512.1 3796399 3796806 R hypothetical protein complement(3796399..3796806) Pseudomonas putida F1 5194430 YP_001268682.1 CDS Pput_3372 NC_009512.1 3796803 3797189 R hypothetical protein complement(3796803..3797189) Pseudomonas putida F1 5194431 YP_001268683.1 CDS Pput_3373 NC_009512.1 3797192 3797572 R hypothetical protein complement(3797192..3797572) Pseudomonas putida F1 5194025 YP_001268684.1 CDS Pput_3374 NC_009512.1 3797576 3797968 R hypothetical protein complement(3797576..3797968) Pseudomonas putida F1 5194026 YP_001268685.1 CDS Pput_3375 NC_009512.1 3798008 3798640 R hypothetical protein complement(3798008..3798640) Pseudomonas putida F1 5194343 YP_001268686.1 CDS Pput_3376 NC_009512.1 3798645 3799613 R hypothetical protein complement(3798645..3799613) Pseudomonas putida F1 5194344 YP_001268687.1 CDS Pput_3377 NC_009512.1 3799626 3800336 R hypothetical protein complement(3799626..3800336) Pseudomonas putida F1 5190954 YP_001268688.1 CDS Pput_3378 NC_009512.1 3800454 3801500 R TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; SPP1 family phage head morphogenesis protein complement(3800454..3801500) Pseudomonas putida F1 5190955 YP_001268689.1 CDS Pput_3379 NC_009512.1 3801490 3802914 R hypothetical protein complement(3801490..3802914) Pseudomonas putida F1 5192339 YP_001268690.1 CDS Pput_3380 NC_009512.1 3802923 3804224 R PFAM: protein of unknown function DUF264; hypothetical protein complement(3802923..3804224) Pseudomonas putida F1 5192340 YP_001268691.1 CDS Pput_3381 NC_009512.1 3804211 3804672 R hypothetical protein complement(3804211..3804672) Pseudomonas putida F1 5192096 YP_001268692.1 CDS Pput_3382 NC_009512.1 3804704 3805312 R hypothetical protein complement(3804704..3805312) Pseudomonas putida F1 5192097 YP_001268693.1 CDS Pput_3383 NC_009512.1 3805620 3806057 R hypothetical protein complement(3805620..3806057) Pseudomonas putida F1 5190439 YP_001268694.1 CDS Pput_3384 NC_009512.1 3806054 3806350 R hypothetical protein complement(3806054..3806350) Pseudomonas putida F1 5190440 YP_001268695.1 CDS Pput_3385 NC_009512.1 3806503 3806739 D hypothetical protein 3806503..3806739 Pseudomonas putida F1 5194915 YP_001268696.1 CDS Pput_3386 NC_009512.1 3806746 3807015 R hypothetical protein complement(3806746..3807015) Pseudomonas putida F1 5194916 YP_001268697.1 CDS Pput_3387 NC_009512.1 3807015 3807326 R hypothetical protein complement(3807015..3807326) Pseudomonas putida F1 5191185 YP_001268698.1 CDS Pput_3388 NC_009512.1 3807736 3808281 R hypothetical protein complement(3807736..3808281) Pseudomonas putida F1 5191186 YP_001268699.1 CDS Pput_3389 NC_009512.1 3808421 3809023 R PFAM: bacteriophage Lambda NinG family protein; bacteriophage lambda NinG family protein complement(3808421..3809023) Pseudomonas putida F1 5190493 YP_001268700.1 CDS Pput_3390 NC_009512.1 3809023 3809421 R PFAM: NinB family protein; NinB family protein complement(3809023..3809421) Pseudomonas putida F1 5190494 YP_001268701.1 CDS Pput_3391 NC_009512.1 3809612 3809890 R hypothetical protein complement(3809612..3809890) Pseudomonas putida F1 5191653 YP_001268702.1 CDS Pput_3392 NC_009512.1 3809890 3810285 R hypothetical protein complement(3809890..3810285) Pseudomonas putida F1 5191654 YP_001268703.1 CDS Pput_3393 NC_009512.1 3810285 3811046 R hypothetical protein complement(3810285..3811046) Pseudomonas putida F1 5191868 YP_001268704.1 CDS Pput_3394 NC_009512.1 3811043 3811819 R hypothetical protein complement(3811043..3811819) Pseudomonas putida F1 5191869 YP_001268705.1 CDS Pput_3395 NC_009512.1 3811816 3812565 R phage-encoded protein complement(3811816..3812565) Pseudomonas putida F1 5191024 YP_001268706.1 CDS Pput_3396 NC_009512.1 3812899 3813090 R hypothetical protein complement(3812899..3813090) Pseudomonas putida F1 5191025 YP_001268707.1 CDS Pput_3397 NC_009512.1 3813118 3813366 R hypothetical protein complement(3813118..3813366) Pseudomonas putida F1 5193659 YP_001268708.1 CDS Pput_3398 NC_009512.1 3813463 3814305 D PFAM: peptidase S24, S26A and S26B; putative phage repressor 3813463..3814305 Pseudomonas putida F1 5193660 YP_001268709.1 CDS Pput_3399 NC_009512.1 3814577 3815152 D hypothetical protein 3814577..3815152 Pseudomonas putida F1 5194395 YP_001268710.1 CDS Pput_3400 NC_009512.1 3815143 3815547 D hypothetical protein 3815143..3815547 Pseudomonas putida F1 5194396 YP_001268711.1 CDS Pput_3401 NC_009512.1 3815588 3815914 R PFAM: protein of unknown function DUF1654; hypothetical protein complement(3815588..3815914) Pseudomonas putida F1 5191123 YP_001268712.1 CDS Pput_3402 NC_009512.1 3816426 3816614 D hypothetical protein 3816426..3816614 Pseudomonas putida F1 5191124 YP_001268713.1 CDS Pput_3403 NC_009512.1 3816611 3816865 D hypothetical protein 3816611..3816865 Pseudomonas putida F1 5194554 YP_001268714.1 CDS Pput_3404 NC_009512.1 3817241 3817519 D hypothetical protein 3817241..3817519 Pseudomonas putida F1 5194555 YP_001268715.1 CDS Pput_3405 NC_009512.1 3817516 3817758 D PFAM: protein of unknown function DUF551; hypothetical protein 3817516..3817758 Pseudomonas putida F1 5191430 YP_001268716.1 CDS Pput_3406 NC_009512.1 3817779 3818213 D hypothetical protein 3817779..3818213 Pseudomonas putida F1 5191431 YP_001268717.1 CDS Pput_3407 NC_009512.1 3818235 3818651 D hypothetical protein 3818235..3818651 Pseudomonas putida F1 5193893 YP_001268718.1 CDS Pput_3408 NC_009512.1 3818648 3818851 D hypothetical protein 3818648..3818851 Pseudomonas putida F1 5193894 YP_001268719.1 CDS Pput_3409 NC_009512.1 3818848 3819069 D hypothetical protein 3818848..3819069 Pseudomonas putida F1 5191785 YP_001268720.1 CDS Pput_3410 NC_009512.1 3819358 3820089 D hypothetical protein 3819358..3820089 Pseudomonas putida F1 5191786 YP_001268721.1 CDS Pput_3411 NC_009512.1 3820086 3820649 D PFAM: siphovirus Gp157 family protein; siphovirus Gp157 family protein 3820086..3820649 Pseudomonas putida F1 5193338 YP_001268722.1 CDS Pput_3412 NC_009512.1 3820657 3821169 D hypothetical protein 3820657..3821169 Pseudomonas putida F1 5193339 YP_001268723.1 CDS Pput_3413 NC_009512.1 3821419 3821940 D hypothetical protein 3821419..3821940 Pseudomonas putida F1 5193408 YP_001268724.1 CDS Pput_3414 NC_009512.1 3821937 3822383 R hypothetical protein complement(3821937..3822383) Pseudomonas putida F1 5193409 YP_001268725.1 CDS Pput_3415 NC_009512.1 3822485 3823042 D hypothetical protein 3822485..3823042 Pseudomonas putida F1 5192432 YP_001268726.1 CDS Pput_3416 NC_009512.1 3823066 3823287 R hypothetical protein complement(3823066..3823287) Pseudomonas putida F1 5192433 YP_001268727.1 CDS Pput_3417 NC_009512.1 3823451 3823726 R hypothetical protein complement(3823451..3823726) Pseudomonas putida F1 5194148 YP_001268728.1 CDS Pput_3418 NC_009512.1 3823762 3824145 D hypothetical protein 3823762..3824145 Pseudomonas putida F1 5194149 YP_001268729.1 CDS Pput_3419 NC_009512.1 3824652 3825071 D hypothetical protein 3824652..3825071 Pseudomonas putida F1 5195321 YP_001268730.1 CDS Pput_3420 NC_009512.1 3825134 3825436 R hypothetical protein complement(3825134..3825436) Pseudomonas putida F1 5195322 YP_001268731.1 CDS Pput_3421 NC_009512.1 3825608 3826402 D hypothetical protein 3825608..3826402 Pseudomonas putida F1 5192159 YP_001268732.1 CDS Pput_3422 NC_009512.1 3826399 3826668 D hypothetical protein 3826399..3826668 Pseudomonas putida F1 5192160 YP_001268733.1 CDS Pput_3423 NC_009512.1 3826665 3826988 D hypothetical protein 3826665..3826988 Pseudomonas putida F1 5190921 YP_001268734.1 CDS Pput_3424 NC_009512.1 3826985 3827377 D hypothetical protein 3826985..3827377 Pseudomonas putida F1 5190922 YP_001268735.1 CDS Pput_3425 NC_009512.1 3827374 3827724 D hypothetical protein 3827374..3827724 Pseudomonas putida F1 5193996 YP_001268736.1 CDS Pput_3426 NC_009512.1 3827956 3828435 D hypothetical protein 3827956..3828435 Pseudomonas putida F1 5193997 YP_001268737.1 CDS Pput_3427 NC_009512.1 3828540 3828752 D PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3828540..3828752 Pseudomonas putida F1 5193210 YP_001268738.1 CDS Pput_3428 NC_009512.1 3828816 3829172 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 3828816..3829172 Pseudomonas putida F1 5193211 YP_001268739.1 CDS Pput_3429 NC_009512.1 3829199 3829960 R hypothetical protein complement(3829199..3829960) Pseudomonas putida F1 5191907 YP_001268740.1 CDS Pput_3430 NC_009512.1 3830028 3830495 R PFAM: protein of unknown function DUF1289; hypothetical protein complement(3830028..3830495) Pseudomonas putida F1 5191908 YP_001268741.2 CDS Pput_3431 NC_009512.1 3830901 3833510 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 3830901..3833510 Pseudomonas putida F1 5192188 YP_001268742.1 CDS prpD NC_009512.1 3833686 3835170 R functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase complement(3833686..3835170) Pseudomonas putida F1 5192189 YP_001268743.1 CDS Pput_3433 NC_009512.1 3835342 3836532 R TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; putative AcnD-accessory protein PrpF complement(3835342..3836532) Pseudomonas putida F1 5194970 YP_001268744.1 CDS Pput_3434 NC_009512.1 3836684 3839275 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3836684..3839275) Pseudomonas putida F1 5194971 YP_001268745.1 CDS Pput_3435 NC_009512.1 3839434 3840561 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(3839434..3840561) Pseudomonas putida F1 5193540 YP_001268746.1 CDS prpB NC_009512.1 3840622 3841512 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(3840622..3841512) Pseudomonas putida F1 5193541 YP_001268747.1 CDS Pput_3437 NC_009512.1 3841509 3842225 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(3841509..3842225) Pseudomonas putida F1 5190483 YP_001268748.1 CDS Pput_3438 NC_009512.1 3842514 3843068 D PFAM: protein of unknown function DUF785; hypothetical protein 3842514..3843068 Pseudomonas putida F1 5190484 YP_001268749.1 CDS Pput_3439 NC_009512.1 3843074 3844609 D hypothetical protein 3843074..3844609 Pseudomonas putida F1 5190250 YP_001268750.1 CDS Pput_3440 NC_009512.1 3844609 3845589 D TIGRFAM: alpha-L-glutamate ligase-like protein; alpha-L-glutamate ligase-like protein 3844609..3845589 Pseudomonas putida F1 5190251 YP_001268751.1 CDS Pput_3441 NC_009512.1 3845798 3847138 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; para-aminobenzoate synthase subunit I 3845798..3847138 Pseudomonas putida F1 5192118 YP_001268752.1 CDS Pput_3442 NC_009512.1 3847219 3847953 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3847219..3847953 Pseudomonas putida F1 5192119 YP_001268753.1 CDS cysB NC_009512.1 3848123 3849097 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(3848123..3849097) Pseudomonas putida F1 5193637 YP_001268754.1 CDS Pput_3444 NC_009512.1 3849226 3849723 R PFAM: UspA domain protein; UspA domain-containing protein complement(3849226..3849723) Pseudomonas putida F1 5193638 YP_001268755.1 CDS Pput_3445 NC_009512.1 3849848 3850897 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(3849848..3850897) Pseudomonas putida F1 5193866 YP_001268756.1 CDS Pput_3446 NC_009512.1 3851028 3852104 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3851028..3852104 Pseudomonas putida F1 5193867 YP_001268757.1 CDS Pput_3447 NC_009512.1 3852175 3852456 R hypothetical protein complement(3852175..3852456) Pseudomonas putida F1 5192064 YP_001268758.1 CDS Pput_3448 NC_009512.1 3852964 3853215 D outer membrane lipoprotein OprI 3852964..3853215 Pseudomonas putida F1 5192065 YP_001268759.1 CDS Pput_3449 NC_009512.1 3853348 3854325 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(3853348..3854325) Pseudomonas putida F1 5191866 YP_001268760.1 CDS Pput_3450 NC_009512.1 3854439 3854759 R hypothetical protein complement(3854439..3854759) Pseudomonas putida F1 5191867 YP_001268761.1 CDS Pput_3451 NC_009512.1 3854788 3855393 R PFAM: lipolytic enzyme, G-D-S-L family; arylesterase complement(3854788..3855393) Pseudomonas putida F1 5194917 YP_001268762.1 CDS Pput_3452 NC_009512.1 3855404 3856090 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3855404..3856090 Pseudomonas putida F1 5194918 YP_001268763.1 CDS Pput_3453 NC_009512.1 3856096 3858594 D PFAM: protein of unknown function DUF214; hypothetical protein 3856096..3858594 Pseudomonas putida F1 5194612 YP_001268764.1 CDS greB NC_009512.1 3858658 3859146 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(3858658..3859146) Pseudomonas putida F1 5194613 YP_001268765.1 CDS Pput_3455 NC_009512.1 3859158 3859466 R hypothetical protein complement(3859158..3859466) Pseudomonas putida F1 5194211 YP_001268766.1 CDS Pput_3456 NC_009512.1 3859715 3860152 R PFAM: DoxX family protein; DoxX family protein complement(3859715..3860152) Pseudomonas putida F1 5194212 YP_001268767.1 CDS Pput_3457 NC_009512.1 3860264 3861706 R PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit complement(3860264..3861706) Pseudomonas putida F1 5192984 YP_001268768.1 CDS Pput_3458 NC_009512.1 3861756 3862625 D PFAM: TatD-related deoxyribonuclease; TatD-related deoxyribonuclease 3861756..3862625 Pseudomonas putida F1 5192985 YP_001268769.1 CDS Pput_3459 NC_009512.1 3862753 3864231 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3862753..3864231 Pseudomonas putida F1 5193222 YP_001268770.1 CDS Pput_3460 NC_009512.1 3864307 3864675 D hypothetical protein 3864307..3864675 Pseudomonas putida F1 5193223 YP_001268771.1 CDS Pput_3461 NC_009512.1 3864717 3865514 R Acyl-CoA thioesterase-like protein complement(3864717..3865514) Pseudomonas putida F1 5194650 YP_001268772.1 CDS Pput_3462 NC_009512.1 3865591 3866370 R PFAM: CHAD domain containing protein; CHAD domain-containing protein complement(3865591..3866370) Pseudomonas putida F1 5194651 YP_001268773.1 CDS Pput_3463 NC_009512.1 3866385 3866663 R hypothetical protein complement(3866385..3866663) Pseudomonas putida F1 5192133 YP_001268774.1 CDS Pput_3464 NC_009512.1 3866841 3867881 D PFAM: Patatin; patatin 3866841..3867881 Pseudomonas putida F1 5192134 YP_001268775.1 CDS Pput_3465 NC_009512.1 3867998 3869869 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA N-terminal domain; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3867998..3869869) Pseudomonas putida F1 5191576 YP_001268776.1 CDS Pput_3466 NC_009512.1 3870051 3870323 R PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(3870051..3870323) Pseudomonas putida F1 5191577 YP_001268777.1 CDS Pput_3467 NC_009512.1 3870476 3872872 R TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3870476..3872872) Pseudomonas putida F1 5190236 YP_001268778.1 CDS clpX NC_009512.1 3873037 3874320 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3873037..3874320) Pseudomonas putida F1 5190237 YP_001268779.1 CDS clpP NC_009512.1 3874429 3875070 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3874429..3875070) Pseudomonas putida F1 5190397 YP_001268780.1 CDS tig NC_009512.1 3875162 3876475 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3875162..3876475) Pseudomonas putida F1 5190398 YP_001268781.1 CDS Pput_3471 NC_009512.1 3876725 3877024 R hypothetical protein complement(3876725..3877024) Pseudomonas putida F1 5190184 YP_001268782.1 CDS Pput_3472 NC_009512.1 3877880 3878779 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3877880..3878779 Pseudomonas putida F1 5194165 YP_001268783.1 CDS Pput_3473 NC_009512.1 3878922 3880661 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3878922..3880661) Pseudomonas putida F1 5193649 YP_001268784.1 CDS Pput_3474 NC_009512.1 3880701 3880973 R hypothetical protein complement(3880701..3880973) Pseudomonas putida F1 5193650 YP_001268785.1 CDS Pput_3475 NC_009512.1 3880986 3881786 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3880986..3881786) Pseudomonas putida F1 5192426 YP_001268786.1 CDS Pput_3476 NC_009512.1 3881790 3882656 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3881790..3882656) Pseudomonas putida F1 5192427 YP_001268787.1 CDS Pput_3477 NC_009512.1 3882653 3883750 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(3882653..3883750) Pseudomonas putida F1 5194588 YP_001268788.1 CDS Pput_3478 NC_009512.1 3883750 3884844 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3883750..3884844) Pseudomonas putida F1 5194589 YP_001268789.1 CDS Pput_3479 NC_009512.1 3885068 3886816 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 3885068..3886816 Pseudomonas putida F1 5195035 YP_001268790.1 CDS Pput_3480 NC_009512.1 3886922 3888610 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3886922..3888610) Pseudomonas putida F1 5195036 YP_001268791.1 CDS Pput_3481 NC_009512.1 3888624 3890189 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; methyl-accepting chemotaxis sensory transducer complement(3888624..3890189) Pseudomonas putida F1 5194768 YP_001268792.1 CDS Pput_3482 NC_009512.1 3890456 3890770 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 3890456..3890770 Pseudomonas putida F1 5194769 YP_001268793.1 CDS Pput_3483 NC_009512.1 3890998 3892308 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3890998..3892308 Pseudomonas putida F1 5192373 YP_001268794.1 CDS Pput_3484 NC_009512.1 3892353 3893051 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3892353..3893051 Pseudomonas putida F1 5192374 YP_001268795.1 CDS Pput_3485 NC_009512.1 3893068 3893736 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3893068..3893736 Pseudomonas putida F1 5191775 YP_001268796.1 CDS Pput_3486 NC_009512.1 3893889 3894938 D hypothetical protein 3893889..3894938 Pseudomonas putida F1 5191776 YP_001268797.1 CDS Pput_3487 NC_009512.1 3894978 3895406 R PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein complement(3894978..3895406) Pseudomonas putida F1 5191634 YP_001268798.1 CDS Pput_3488 NC_009512.1 3895507 3896385 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3895507..3896385 Pseudomonas putida F1 5191635 YP_001268799.1 CDS Pput_3489 NC_009512.1 3896528 3898414 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3896528..3898414 Pseudomonas putida F1 5193224 YP_001268800.1 CDS Pput_3490 NC_009512.1 3898468 3899532 R hypothetical protein complement(3898468..3899532) Pseudomonas putida F1 5193225 YP_001268801.1 CDS Pput_3491 NC_009512.1 3899645 3900022 R PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(3899645..3900022) Pseudomonas putida F1 5191924 YP_001268802.1 CDS Pput_3492 NC_009512.1 3900035 3901171 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3900035..3901171) Pseudomonas putida F1 5191925 YP_001268803.1 CDS Pput_3493 NC_009512.1 3901287 3901880 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3901287..3901880 Pseudomonas putida F1 5190694 YP_001268804.1 CDS Pput_3494 NC_009512.1 3902006 3902791 D PFAM: protein of unknown function DUF81; hypothetical protein 3902006..3902791 Pseudomonas putida F1 5190695 YP_001268805.1 CDS Pput_3495 NC_009512.1 3902795 3903400 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(3902795..3903400) Pseudomonas putida F1 5194261 YP_001268806.1 CDS Pput_3496 NC_009512.1 3903461 3905695 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(3903461..3905695) Pseudomonas putida F1 5194262 YP_001268807.1 CDS Pput_3497 NC_009512.1 3906136 3907335 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3906136..3907335 Pseudomonas putida F1 5194190 YP_001268808.1 CDS Pput_3498 NC_009512.1 3907559 3909406 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter complement(3907559..3909406) Pseudomonas putida F1 5194191 YP_001268809.1 CDS Pput_3499 NC_009512.1 3915252 3916139 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3915252..3916139 Pseudomonas putida F1 5194160 YP_001268810.1 CDS Pput_3500 NC_009512.1 3916206 3916319 R hypothetical protein complement(3916206..3916319) Pseudomonas putida F1 5190347 YP_001268811.1 CDS Pput_3501 NC_009512.1 3916332 3916613 D hypothetical protein 3916332..3916613 Pseudomonas putida F1 5195469 YP_001268812.1 CDS Pput_3502 NC_009512.1 3916653 3918461 R PFAM: creatinase; peptidase M24; peptidase M24 complement(3916653..3918461) Pseudomonas putida F1 5195470 YP_001268813.1 CDS Pput_3503 NC_009512.1 3918682 3919800 D hypothetical protein 3918682..3919800 Pseudomonas putida F1 5193956 YP_001268814.1 CDS Pput_3504 NC_009512.1 3919784 3920554 D hypothetical protein 3919784..3920554 Pseudomonas putida F1 5193957 YP_001268815.1 CDS Pput_3505 NC_009512.1 3920533 3920913 R hypothetical protein complement(3920533..3920913) Pseudomonas putida F1 5190810 YP_001268816.1 CDS Pput_3506 NC_009512.1 3920995 3921987 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator complement(3920995..3921987) Pseudomonas putida F1 5190811 YP_001268817.1 CDS Pput_3507 NC_009512.1 3922070 3922618 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3922070..3922618 Pseudomonas putida F1 5190641 YP_001268818.1 CDS Pput_3508 NC_009512.1 3922667 3923230 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator complement(3922667..3923230) Pseudomonas putida F1 5190642 YP_001268819.1 CDS Pput_3509 NC_009512.1 3923315 3924265 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3923315..3924265 Pseudomonas putida F1 5194085 YP_001268820.1 CDS Pput_3510 NC_009512.1 3924415 3927330 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 3924415..3927330 Pseudomonas putida F1 5194086 YP_001268821.1 CDS Pput_3511 NC_009512.1 3927330 3927674 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 3927330..3927674 Pseudomonas putida F1 5194962 YP_001268822.1 CDS Pput_3512 NC_009512.1 3927671 3929350 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 3927671..3929350 Pseudomonas putida F1 5194963 YP_001268823.1 CDS Pput_3513 NC_009512.1 3929347 3929835 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 3929347..3929835 Pseudomonas putida F1 5191410 YP_001268824.1 CDS Pput_3514 NC_009512.1 3929832 3930110 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 3929832..3930110 Pseudomonas putida F1 5191411 YP_001268825.1 CDS Pput_3515 NC_009512.1 3930107 3930472 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3930107..3930472 Pseudomonas putida F1 5195134 YP_001268826.1 CDS Pput_3516 NC_009512.1 3930485 3930697 R hypothetical protein complement(3930485..3930697) Pseudomonas putida F1 5195135 YP_001268827.1 CDS Pput_3517 NC_009512.1 3930694 3931179 R hypothetical protein complement(3930694..3931179) Pseudomonas putida F1 5194061 YP_001268828.1 CDS Pput_3518 NC_009512.1 3931511 3931705 R hypothetical protein complement(3931511..3931705) Pseudomonas putida F1 5194062 YP_001268829.1 CDS Pput_3519 NC_009512.1 3931883 3932347 R PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator complement(3931883..3932347) Pseudomonas putida F1 5192607 YP_001268830.1 CDS Pput_3520 NC_009512.1 3933134 3934312 D PFAM: Integrase, catalytic region; integrase catalytic subunit 3933134..3934312 Pseudomonas putida F1 5192608 YP_001268831.1 CDS Pput_3521 NC_009512.1 3934616 3935389 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(3934616..3935389) Pseudomonas putida F1 5191037 YP_001268832.1 CDS Pput_3522 NC_009512.1 3935403 3936530 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(3935403..3936530) Pseudomonas putida F1 5191038 YP_001268833.1 CDS Pput_3523 NC_009512.1 3936539 3937732 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3936539..3937732) Pseudomonas putida F1 5190911 YP_001268834.1 CDS Pput_3524 NC_009512.1 3937744 3938511 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(3937744..3938511) Pseudomonas putida F1 5190912 YP_001268835.1 CDS Pput_3525 NC_009512.1 3938525 3940174 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3938525..3940174) Pseudomonas putida F1 5190730 YP_001268836.1 CDS Pput_3526 NC_009512.1 3940294 3944739 R SMART: leucine-rich repeat-containing protein, typical subtype; hypothetical protein complement(3940294..3944739) Pseudomonas putida F1 5190731 YP_001268837.1 CDS Pput_3527 NC_009512.1 3944886 3945908 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(3944886..3945908) Pseudomonas putida F1 5190798 YP_001268838.1 CDS Pput_3528 NC_009512.1 3946109 3946972 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3946109..3946972) Pseudomonas putida F1 5190799 YP_001268839.1 CDS Pput_3529 NC_009512.1 3947085 3948191 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 3947085..3948191 Pseudomonas putida F1 5193683 YP_001268840.1 CDS Pput_3530 NC_009512.1 3948226 3949053 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3948226..3949053 Pseudomonas putida F1 5193684 YP_001268841.1 CDS Pput_3531 NC_009512.1 3949282 3950346 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(3949282..3950346) Pseudomonas putida F1 5191905 YP_001268842.1 CDS Pput_3532 NC_009512.1 3950480 3951814 D PFAM: peptidase U32; peptidase U32 3950480..3951814 Pseudomonas putida F1 5191906 YP_001268843.1 CDS Pput_3534 NC_009512.1 3952272 3952700 D PFAM: protein of unknown function DUF411; hypothetical protein 3952272..3952700 Pseudomonas putida F1 5194228 YP_001268844.1 CDS Pput_3535 NC_009512.1 3952700 3953137 D hypothetical protein 3952700..3953137 Pseudomonas putida F1 5192490 YP_001268845.1 CDS Pput_3536 NC_009512.1 3953213 3954211 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3953213..3954211 Pseudomonas putida F1 5193478 YP_001268846.1 CDS Pput_3537 NC_009512.1 3954284 3954865 R PFAM: DinB family protein; DinB family protein complement(3954284..3954865) Pseudomonas putida F1 5193479 YP_001268847.1 CDS Pput_3538 NC_009512.1 3954879 3955985 R PFAM: AFG1-family ATPase; AFG1 family ATPase complement(3954879..3955985) Pseudomonas putida F1 5192968 YP_001268848.1 CDS Pput_3539 NC_009512.1 3956028 3957173 R PFAM: glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(3956028..3957173) Pseudomonas putida F1 5192969 YP_001268849.1 CDS Pput_3540 NC_009512.1 3957196 3957513 R hypothetical protein complement(3957196..3957513) Pseudomonas putida F1 5191168 YP_001268850.1 CDS Pput_3541 NC_009512.1 3957669 3958634 R catalyzes the formation of putrescine from agmatine; agmatinase complement(3957669..3958634) Pseudomonas putida F1 5191169 YP_001268851.1 CDS Pput_3542 NC_009512.1 3958660 3959739 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3958660..3959739) Pseudomonas putida F1 5192596 YP_001268852.1 CDS Pput_3543 NC_009512.1 3959776 3960732 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3959776..3960732 Pseudomonas putida F1 5192597 YP_001268853.1 CDS Pput_3544 NC_009512.1 3961221 3963647 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(3961221..3963647) Pseudomonas putida F1 5191911 YP_001268854.1 CDS Pput_3545 NC_009512.1 3963875 3964999 R TIGRFAM: RNA polymerase sigma-70; PFAM: FecR protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; anti-FecI sigma factor FecR complement(3963875..3964999) Pseudomonas putida F1 5191912 YP_001268855.1 CDS Pput_3546 NC_009512.1 3965131 3965610 D SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein 3965131..3965610 Pseudomonas putida F1 5191672 YP_001268856.1 CDS Pput_3547 NC_009512.1 3965631 3965894 R hypothetical protein complement(3965631..3965894) Pseudomonas putida F1 5191673 YP_001268857.1 CDS Pput_3548 NC_009512.1 3965917 3966345 D PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 3965917..3966345 Pseudomonas putida F1 5191743 YP_001268858.1 CDS Pput_3549 NC_009512.1 3966368 3966985 R PFAM: tRNA--hydroxylase; tRNA--hydroxylase complement(3966368..3966985) Pseudomonas putida F1 5191744 YP_001268859.1 CDS Pput_3550 NC_009512.1 3967140 3968003 D PFAM: UspA domain protein; UspA domain-containing protein 3967140..3968003 Pseudomonas putida F1 5191689 YP_001268860.1 CDS Pput_3551 NC_009512.1 3968117 3968320 R hypothetical protein complement(3968117..3968320) Pseudomonas putida F1 5191690 YP_001268861.1 CDS Pput_3552 NC_009512.1 3968317 3971199 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha complement(3968317..3971199) Pseudomonas putida F1 5192296 YP_001268862.1 CDS Pput_3553 NC_009512.1 3971196 3972755 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) complement(3971196..3972755) Pseudomonas putida F1 5192297 YP_001268863.1 CDS Pput_3554 NC_009512.1 3972749 3973231 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(3972749..3973231) Pseudomonas putida F1 5192540 YP_001268864.1 CDS Pput_3555 NC_009512.1 3973633 3974154 R PFAM: ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP complement(3973633..3974154) Pseudomonas putida F1 5192541 YP_001268865.1 CDS Pput_3556 NC_009512.1 3974277 3974831 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator complement(3974277..3974831) Pseudomonas putida F1 5195437 YP_001268866.1 CDS Pput_3557 NC_009512.1 3975015 3976373 R PFAM: aminotransferase class-III; putative aminotransferase complement(3975015..3976373) Pseudomonas putida F1 5195438 YP_001268867.1 CDS Pput_3558 NC_009512.1 3976443 3977216 R PFAM: peptidase C26; peptidase C26 complement(3976443..3977216) Pseudomonas putida F1 5191144 YP_001268868.1 CDS Pput_3559 NC_009512.1 3977288 3978634 R PFAM: glutamine synthetase, catalytic region; glutamine synthetase complement(3977288..3978634) Pseudomonas putida F1 5191145 YP_001268869.1 CDS Pput_3560 NC_009512.1 3978662 3979216 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator complement(3978662..3979216) Pseudomonas putida F1 5192246 YP_001268870.1 CDS Pput_3561 NC_009512.1 3979430 3980323 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3979430..3980323 Pseudomonas putida F1 5192247 YP_001268871.1 CDS Pput_3562 NC_009512.1 3980423 3981127 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3980423..3981127 Pseudomonas putida F1 5192398 YP_001268872.1 CDS Pput_3563 NC_009512.1 3981209 3981601 D PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3981209..3981601 Pseudomonas putida F1 5192399 YP_001268873.1 CDS Pput_3564 NC_009512.1 3981738 3982577 D PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; AraC family transcriptional regulator 3981738..3982577 Pseudomonas putida F1 5192653 YP_001268874.1 CDS Pput_3565 NC_009512.1 3982649 3983623 R hypothetical protein complement(3982649..3983623) Pseudomonas putida F1 5192654 YP_001268875.1 CDS Pput_3566 NC_009512.1 3983620 3984183 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(3983620..3984183) Pseudomonas putida F1 5191404 YP_001268876.1 CDS Pput_3567 NC_009512.1 3984622 3985071 R hypothetical protein complement(3984622..3985071) Pseudomonas putida F1 5191405 YP_001268877.1 CDS Pput_3568 NC_009512.1 3985258 3985347 R hypothetical protein complement(3985258..3985347) Pseudomonas putida F1 5193247 YP_001268878.1 CDS Pput_3569 NC_009512.1 3985541 3986167 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3985541..3986167 Pseudomonas putida F1 5193248 YP_001268879.1 CDS Pput_3570 NC_009512.1 3986213 3986521 R PFAM: Chorismate mutase; chorismate mutase complement(3986213..3986521) Pseudomonas putida F1 5191278 YP_001268880.1 CDS Pput_3571 NC_009512.1 3986663 3987619 D SMART: PDZ/DHR/GLGF domain protein; PDZ/DHR/GLGF domain-containing protein 3986663..3987619 Pseudomonas putida F1 5191279 YP_001268881.1 CDS Pput_3573 NC_009512.1 3988562 3989572 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; tRNA-dihydrouridine synthase A 3988562..3989572 Pseudomonas putida F1 5194229 YP_001268882.2 CDS Pput_3574 NC_009512.1 3989729 3990655 D TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 3989729..3990655 Pseudomonas putida F1 5191159 YP_001268883.1 CDS Pput_3575 NC_009512.1 3990835 3992688 D hypothetical protein 3990835..3992688 Pseudomonas putida F1 5193492 YP_001268884.1 CDS Pput_3576 NC_009512.1 3992834 3993316 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist complement(3992834..3993316) Pseudomonas putida F1 5193493 YP_001268885.1 CDS Pput_3577 NC_009512.1 3993313 3994494 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein complement(3993313..3994494) Pseudomonas putida F1 5195239 YP_001268886.1 CDS Pput_3578 NC_009512.1 3994765 3995064 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3994765..3995064 Pseudomonas putida F1 5195240 YP_001268887.1 CDS Pput_3579 NC_009512.1 3995099 3995806 R PFAM: VacJ family lipoprotein; VacJ family lipoprotein complement(3995099..3995806) Pseudomonas putida F1 5191674 YP_001268888.1 CDS Pput_3580 NC_009512.1 3996008 3996571 D hypothetical protein 3996008..3996571 Pseudomonas putida F1 5191675 YP_001268889.1 CDS Pput_3581 NC_009512.1 3996694 3996957 D hypothetical protein 3996694..3996957 Pseudomonas putida F1 5191274 YP_001268890.1 CDS queF NC_009512.1 3996989 3997819 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(3996989..3997819) Pseudomonas putida F1 5191275 YP_001268891.1 CDS Pput_3583 NC_009512.1 3997888 3998415 R hypothetical protein complement(3997888..3998415) Pseudomonas putida F1 5191815 YP_001268892.1 CDS Pput_3584 NC_009512.1 3998617 3999297 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 3998617..3999297 Pseudomonas putida F1 5191816 YP_001268893.1 CDS Pput_3585 NC_009512.1 3999297 4000646 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 3999297..4000646 Pseudomonas putida F1 5192605 YP_001268894.1 CDS Pput_3586 NC_009512.1 4000686 4001927 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein complement(4000686..4001927) Pseudomonas putida F1 5192606 YP_001268895.1 CDS Pput_3587 NC_009512.1 4001988 4002686 R TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(4001988..4002686) Pseudomonas putida F1 5192355 YP_001268896.1 CDS Pput_3588 NC_009512.1 4002679 4003929 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein complement(4002679..4003929) Pseudomonas putida F1 5192356 YP_001268897.1 CDS Pput_3589 NC_009512.1 4004023 4004607 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 4004023..4004607 Pseudomonas putida F1 5194740 YP_001268898.1 CDS Pput_3590 NC_009512.1 4004639 4005355 D PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4004639..4005355 Pseudomonas putida F1 5194741 YP_001268899.1 CDS Pput_3591 NC_009512.1 4005404 4006798 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(4005404..4006798) Pseudomonas putida F1 5192190 YP_001268900.1 CDS Pput_3592 NC_009512.1 4007003 4008001 R PFAM: ApbE family lipoprotein; ApbE family lipoprotein complement(4007003..4008001) Pseudomonas putida F1 5192191 YP_001268901.1 CDS Pput_3593 NC_009512.1 4008181 4009644 R catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase complement(4008181..4009644) Pseudomonas putida F1 5192615 YP_001268902.1 CDS Pput_3594 NC_009512.1 4009812 4013261 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 4009812..4013261 Pseudomonas putida F1 5192616 YP_001268903.1 CDS Pput_3595 NC_009512.1 4013271 4013843 D hypothetical protein 4013271..4013843 Pseudomonas putida F1 5191197 YP_001268904.1 CDS Pput_3596 NC_009512.1 4013848 4017165 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; non-specific serine/threonine protein kinase 4013848..4017165 Pseudomonas putida F1 5191198 YP_001268905.1 CDS Pput_3597 NC_009512.1 4017566 4018576 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(4017566..4018576) Pseudomonas putida F1 5194500 YP_001268906.1 CDS Pput_3598 NC_009512.1 4018754 4019461 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(4018754..4019461) Pseudomonas putida F1 5194501 YP_001268907.1 CDS Pput_3599 NC_009512.1 4019676 4020284 D Represses a number of genes involved in the response to DNA damage; LexA repressor 4019676..4020284 Pseudomonas putida F1 5192302 YP_001268908.1 CDS Pput_3600 NC_009512.1 4020298 4020774 D SOS-response cell division inhibitor 4020298..4020774 Pseudomonas putida F1 5192303 YP_001268909.1 CDS Pput_3601 NC_009512.1 4020825 4021058 R hypothetical protein complement(4020825..4021058) Pseudomonas putida F1 5190258 YP_001268910.1 CDS Pput_3602 NC_009512.1 4021109 4021798 R hypothetical protein complement(4021109..4021798) Pseudomonas putida F1 5190259 YP_001268911.1 CDS Pput_3603 NC_009512.1 4021814 4024423 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(4021814..4024423) Pseudomonas putida F1 5193061 YP_001268912.1 CDS Pput_3604 NC_009512.1 4024524 4024775 R PFAM: protein of unknown function DUF1653; hypothetical protein complement(4024524..4024775) Pseudomonas putida F1 5193062 YP_001268913.1 CDS fadA NC_009512.1 4024851 4026026 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase complement(4024851..4026026) Pseudomonas putida F1 5190371 YP_001268914.1 CDS fadB NC_009512.1 4026058 4028205 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha complement(4026058..4028205) Pseudomonas putida F1 5190372 YP_001268915.1 CDS Pput_3607 NC_009512.1 4028817 4029254 R hypothetical protein complement(4028817..4029254) Pseudomonas putida F1 5193570 YP_001268916.1 CDS Pput_3608 NC_009512.1 4029365 4029805 D PFAM: UspA domain protein; UspA domain-containing protein 4029365..4029805 Pseudomonas putida F1 5193571 YP_001268917.1 CDS Pput_3609 NC_009512.1 4029913 4031841 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(4029913..4031841) Pseudomonas putida F1 5195402 YP_001268918.1 CDS Pput_3610 NC_009512.1 4032038 4033987 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase subunit 4032038..4033987 Pseudomonas putida F1 5195403 YP_001268919.1 CDS Pput_3611 NC_009512.1 4034099 4034902 R PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; MOSC domain-containing protein complement(4034099..4034902) Pseudomonas putida F1 5193854 YP_001268920.1 CDS Pput_3612 NC_009512.1 4034958 4035893 R PFAM: response regulator receiver; CheW domain protein; putative CheW protein complement(4034958..4035893) Pseudomonas putida F1 5193855 YP_001268921.1 CDS Pput_3613 NC_009512.1 4036242 4036754 D putative CheA signal transduction histidine kinase 4036242..4036754 Pseudomonas putida F1 5195132 YP_001268922.1 CDS Pput_3614 NC_009512.1 4037121 4038017 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 4037121..4038017 Pseudomonas putida F1 5195133 YP_001268923.1 CDS Pput_3615 NC_009512.1 4038007 4038666 D PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4038007..4038666 Pseudomonas putida F1 5191347 YP_001268924.1 CDS Pput_3616 NC_009512.1 4038650 4039537 R cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase complement(4038650..4039537) Pseudomonas putida F1 5191348 YP_001268925.1 CDS Pput_3617 NC_009512.1 4039794 4041041 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4039794..4041041 Pseudomonas putida F1 5192599 YP_001268926.1 CDS Pput_3618 NC_009512.1 4041030 4042247 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; molybdenum cofactor synthesis domain-containing protein complement(4041030..4042247) Pseudomonas putida F1 5192600 YP_001268927.1 CDS Pput_3619 NC_009512.1 4042240 4042779 R TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B complement(4042240..4042779) Pseudomonas putida F1 5191154 YP_001268928.1 CDS Pput_3620 NC_009512.1 4042967 4043188 D PFAM: protein of unknown function DUF903; hypothetical protein 4042967..4043188 Pseudomonas putida F1 5191155 YP_001268929.1 CDS Pput_3621 NC_009512.1 4043453 4045120 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4043453..4045120) Pseudomonas putida F1 5191207 YP_001268930.1 CDS Pput_3622 NC_009512.1 4045241 4047004 R TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein complement(4045241..4047004) Pseudomonas putida F1 5190841 YP_001268931.1 CDS Pput_3623 NC_009512.1 4047215 4047388 D hypothetical protein 4047215..4047388 Pseudomonas putida F1 5191474 YP_001268932.1 CDS Pput_3624 NC_009512.1 4047503 4048645 R Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase complement(4047503..4048645) Pseudomonas putida F1 5191475 YP_001268933.1 CDS Pput_3625 NC_009512.1 4048706 4048948 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA complement(4048706..4048948) Pseudomonas putida F1 5194093 YP_001268934.1 CDS Pput_3626 NC_009512.1 4049741 4050805 R putative RNA 2'-O-ribose methyltransferase complement(4049741..4050805) Pseudomonas putida F1 5194094 YP_001268935.1 CDS acnA NC_009512.1 4051030 4053771 D catalyzes the conversion of citrate to isocitrate; aconitate hydratase 4051030..4053771 Pseudomonas putida F1 5194934 YP_001268936.1 CDS Pput_3628 NC_009512.1 4054022 4055587 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; methyl-accepting chemotaxis sensory transducer 4054022..4055587 Pseudomonas putida F1 5194935 YP_001268937.1 CDS Pput_3629 NC_009512.1 4055824 4056729 R PFAM: pseudouridine synthase; pseudouridine synthase complement(4055824..4056729) Pseudomonas putida F1 5192074 YP_001268938.1 CDS Pput_3630 NC_009512.1 4056760 4057068 R hypothetical protein complement(4056760..4057068) Pseudomonas putida F1 5192075 YP_001268939.1 CDS Pput_3631 NC_009512.1 4057134 4057565 R PFAM: Peptidase M15A; peptidase M15A complement(4057134..4057565) Pseudomonas putida F1 5191406 YP_001268940.1 CDS Pput_3632 NC_009512.1 4057674 4057913 R PFAM: glutaredoxin 2; glutaredoxin complement(4057674..4057913) Pseudomonas putida F1 5191407 YP_001268941.1 CDS Pput_3633 NC_009512.1 4057987 4059195 R PFAM: Rh family protein/ammonium transporter; Rh family protein/ammonium transporter complement(4057987..4059195) Pseudomonas putida F1 5194888 YP_001268942.1 CDS Pput_3634 NC_009512.1 4059508 4059822 D PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 4059508..4059822 Pseudomonas putida F1 5194889 YP_001268943.1 CDS Pput_3635 NC_009512.1 4059832 4060206 D hypothetical protein 4059832..4060206 Pseudomonas putida F1 5195408 YP_001268944.1 CDS Pput_3636 NC_009512.1 4060203 4060532 D hypothetical protein 4060203..4060532 Pseudomonas putida F1 5195409 YP_001268945.1 CDS Pput_3637 NC_009512.1 4060590 4062008 D dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 4060590..4062008 Pseudomonas putida F1 5194724 YP_001268946.1 CDS Pput_3638 NC_009512.1 4062291 4062908 D PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4062291..4062908 Pseudomonas putida F1 5194725 YP_001268947.1 CDS Pput_3639 NC_009512.1 4062917 4066549 D TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 4062917..4066549 Pseudomonas putida F1 5193594 YP_001268948.1 CDS Pput_3640 NC_009512.1 4066591 4066935 D PFAM: protein of unknown function DUF469; hypothetical protein 4066591..4066935 Pseudomonas putida F1 5193595 YP_001268949.1 CDS Pput_3641 NC_009512.1 4067136 4068590 D TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 4067136..4068590 Pseudomonas putida F1 5191909 YP_001268950.1 CDS Pput_3642 NC_009512.1 4068721 4071111 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(4068721..4071111) Pseudomonas putida F1 5191910 YP_001268951.2 CDS rlmL NC_009512.1 4071206 4073398 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(4071206..4073398) Pseudomonas putida F1 5194131 YP_001268952.1 CDS Pput_3644 NC_009512.1 4073961 4074176 D PFAM: ribosome modulation factor; ribosome modulation factor 4073961..4074176 Pseudomonas putida F1 5194132 YP_001268953.1 CDS Pput_3645 NC_009512.1 4074340 4075449 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(4074340..4075449) Pseudomonas putida F1 5190298 YP_001268954.1 CDS Pput_3646 NC_009512.1 4075500 4076714 D nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 4075500..4076714 Pseudomonas putida F1 5190299 YP_001268955.1 CDS Pput_3647 NC_009512.1 4076726 4077301 D PFAM: response regulator receiver; ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 4076726..4077301 Pseudomonas putida F1 5192644 YP_001268956.1 CDS Pput_3648 NC_009512.1 4077486 4078697 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 4077486..4078697 Pseudomonas putida F1 5192645 YP_001268957.1 CDS Pput_3649 NC_009512.1 4078707 4080377 D PFAM: protein kinase; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; protein kinase 4078707..4080377 Pseudomonas putida F1 5191172 YP_001268958.1 CDS Pput_3650 NC_009512.1 4080405 4081145 D catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 4080405..4081145 Pseudomonas putida F1 5191173 YP_001268959.1 CDS Pput_3651 NC_009512.1 4081232 4082266 R PFAM: OmpA/MotB domain protein; OmpF family protein; OmpF family protein complement(4081232..4082266) Pseudomonas putida F1 5194833 YP_001268960.1 CDS Pput_3652 NC_009512.1 4082378 4082944 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX complement(4082378..4082944) Pseudomonas putida F1 5194834 YP_001268961.1 CDS Pput_3653 NC_009512.1 4083058 4083882 R PFAM: Conserved TM helix repeat-containing protein; TM helix repeat-containing protein complement(4083058..4083882) Pseudomonas putida F1 5195074 YP_001268962.1 CDS Pput_3654 NC_009512.1 4083885 4084157 R hypothetical protein complement(4083885..4084157) Pseudomonas putida F1 5195075 YP_001268963.1 CDS Pput_3655 NC_009512.1 4084245 4085240 R PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein complement(4084245..4085240) Pseudomonas putida F1 5193598 YP_001268964.1 CDS Pput_3656 NC_009512.1 4085268 4085759 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(4085268..4085759) Pseudomonas putida F1 5193599 YP_001268965.1 CDS Pput_3657 NC_009512.1 4086118 4087146 R hypothetical protein complement(4086118..4087146) Pseudomonas putida F1 5194911 YP_001268966.1 CDS Pput_3658 NC_009512.1 4087213 4089588 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(4087213..4089588) Pseudomonas putida F1 5194912 YP_001268967.1 CDS Pput_3659 NC_009512.1 4089780 4090598 D PFAM: protein of unknown function DUF299; hypothetical protein 4089780..4090598 Pseudomonas putida F1 5191592 YP_001268968.1 CDS Pput_3660 NC_009512.1 4090708 4095573 R PFAM: NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(4090708..4095573) Pseudomonas putida F1 5191593 YP_001268969.1 CDS Pput_3661 NC_009512.1 4095848 4096201 D hypothetical protein 4095848..4096201 Pseudomonas putida F1 5191722 YP_001268970.1 CDS Pput_3662 NC_009512.1 4096401 4097306 R activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR complement(4096401..4097306) Pseudomonas putida F1 5191723 YP_001268971.1 CDS Pput_3663 NC_009512.1 4097430 4098662 D catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 4097430..4098662 Pseudomonas putida F1 5194427 YP_001268972.1 CDS Pput_3664 NC_009512.1 4098890 4099390 D TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 4098890..4099390 Pseudomonas putida F1 5194428 YP_001268973.1 CDS Pput_3665 NC_009512.1 4099396 4100331 D PFAM: FecR protein; anti-FecI sigma factor FecR 4099396..4100331 Pseudomonas putida F1 5192639 YP_001268974.1 CDS Pput_3666 NC_009512.1 4100442 4102928 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4100442..4102928 Pseudomonas putida F1 5192640 YP_001268975.1 CDS Pput_3667 NC_009512.1 4103236 4105908 D hypothetical protein 4103236..4105908 Pseudomonas putida F1 5190786 YP_001268976.1 CDS Pput_3668 NC_009512.1 4105908 4107038 D hypothetical protein 4105908..4107038 Pseudomonas putida F1 5190787 YP_001268977.1 CDS Pput_3669 NC_009512.1 4107118 4108086 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4107118..4108086) Pseudomonas putida F1 5195194 YP_001268978.1 CDS Pput_3670 NC_009512.1 4108311 4108754 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4108311..4108754 Pseudomonas putida F1 5195195 YP_001268979.1 CDS Pput_3671 NC_009512.1 4108774 4109598 D PFAM: AraC protein, arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4108774..4109598 Pseudomonas putida F1 5191527 YP_001268980.1 CDS Pput_3672 NC_009512.1 4109707 4110093 D PFAM: Cupin 2, conserved barrel domain protein; cupin 4109707..4110093 Pseudomonas putida F1 5191528 YP_001268981.1 CDS Pput_3673 NC_009512.1 4110263 4110973 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4110263..4110973 Pseudomonas putida F1 5195052 YP_001268982.1 CDS Pput_3674 NC_009512.1 4111077 4112495 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4111077..4112495 Pseudomonas putida F1 5195053 YP_001268983.1 CDS Pput_3675 NC_009512.1 4112697 4113842 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4112697..4113842 Pseudomonas putida F1 5192098 YP_001268984.1 CDS Pput_3676 NC_009512.1 4113832 4115346 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4113832..4115346 Pseudomonas putida F1 5192099 YP_001268985.1 CDS Pput_3677 NC_009512.1 4115413 4116177 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 4115413..4116177 Pseudomonas putida F1 5194781 YP_001268986.1 CDS Pput_3678 NC_009512.1 4116231 4119314 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(4116231..4119314) Pseudomonas putida F1 5194782 YP_001268987.1 CDS Pput_3679 NC_009512.1 4119311 4120408 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(4119311..4120408) Pseudomonas putida F1 5195210 YP_001268988.1 CDS Pput_3680 NC_009512.1 4120493 4120948 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 4120493..4120948 Pseudomonas putida F1 5195211 YP_001268989.1 CDS Pput_3681 NC_009512.1 4121095 4121343 D PFAM: CsbD family protein; CsbD family protein 4121095..4121343 Pseudomonas putida F1 5192710 YP_001268990.1 CDS Pput_3682 NC_009512.1 4121396 4122649 R PFAM: outer membrane porin; outer membrane porin complement(4121396..4122649) Pseudomonas putida F1 5192711 YP_001268991.1 CDS Pput_3683 NC_009512.1 4122713 4124017 R TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; CitMHS family citrate/H+ symporter complement(4122713..4124017) Pseudomonas putida F1 5194734 YP_001268992.1 CDS Pput_3684 NC_009512.1 4124132 4125439 R PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(4124132..4125439) Pseudomonas putida F1 5194735 YP_001268993.1 CDS Pput_3685 NC_009512.1 4125511 4126623 R PFAM: protein of unknown function DUF453; hypothetical protein complement(4125511..4126623) Pseudomonas putida F1 5192145 YP_001268994.1 CDS Pput_3686 NC_009512.1 4126738 4127631 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4126738..4127631 Pseudomonas putida F1 5192146 YP_001268995.1 CDS Pput_3687 NC_009512.1 4127698 4128489 D hypothetical protein 4127698..4128489 Pseudomonas putida F1 5191288 YP_001268996.1 CDS Pput_3688 NC_009512.1 4128581 4128877 R hypothetical protein complement(4128581..4128877) Pseudomonas putida F1 5191289 YP_001268997.1 CDS Pput_3689 NC_009512.1 4129274 4131397 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase, C-terminal domain; HAD family hydrolase 4129274..4131397 Pseudomonas putida F1 5193733 YP_001268998.1 CDS Pput_3690 NC_009512.1 4131477 4132661 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4131477..4132661) Pseudomonas putida F1 5193734 YP_001268999.1 CDS Pput_3691 NC_009512.1 4132658 4133110 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(4132658..4133110) Pseudomonas putida F1 5194313 YP_001269000.1 CDS Pput_3692 NC_009512.1 4133110 4134273 R PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(4133110..4134273) Pseudomonas putida F1 5194314 YP_001269001.1 CDS Pput_3693 NC_009512.1 4134307 4136082 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(4134307..4136082) Pseudomonas putida F1 5193864 YP_001269002.1 CDS Pput_3694 NC_009512.1 4136079 4137317 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA epimerase complement(4136079..4137317) Pseudomonas putida F1 5193865 YP_001269003.1 CDS Pput_3695 NC_009512.1 4137345 4138325 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4137345..4138325 Pseudomonas putida F1 5192679 YP_001269004.1 CDS Pput_3696 NC_009512.1 4138427 4140388 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 4138427..4140388 Pseudomonas putida F1 5192680 YP_001269005.1 CDS Pput_3697 NC_009512.1 4140417 4140710 R hypothetical protein complement(4140417..4140710) Pseudomonas putida F1 5195555 YP_001269006.1 CDS Pput_3698 NC_009512.1 4140703 4141089 R PFAM: protein of unknown function DUF202; hypothetical protein complement(4140703..4141089) Pseudomonas putida F1 5195556 YP_001269007.1 CDS Pput_3699 NC_009512.1 4141089 4142411 R PFAM: protein of unknown function DUF1329; hypothetical protein complement(4141089..4142411) Pseudomonas putida F1 5193364 YP_001269008.1 CDS Pput_3700 NC_009512.1 4142422 4144275 R PFAM: protein of unknown function DUF1302; hypothetical protein complement(4142422..4144275) Pseudomonas putida F1 5193365 YP_001269009.1 CDS Pput_3701 NC_009512.1 4144451 4145434 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4144451..4145434 Pseudomonas putida F1 5194694 YP_001269010.1 CDS Pput_3702 NC_009512.1 4145447 4146742 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4145447..4146742) Pseudomonas putida F1 5194695 YP_001269011.1 CDS Pput_3703 NC_009512.1 4146805 4147971 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(4146805..4147971) Pseudomonas putida F1 5190858 YP_001269012.1 CDS Pput_3704 NC_009512.1 4147986 4149533 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4147986..4149533) Pseudomonas putida F1 5190859 YP_001269013.1 CDS Pput_3705 NC_009512.1 4149778 4150560 D PFAM: class II aldolase/adducin family protein; class II aldolase/adducin domain-containing protein 4149778..4150560 Pseudomonas putida F1 5191368 YP_001269014.1 CDS Pput_3706 NC_009512.1 4150605 4151492 D PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 4150605..4151492 Pseudomonas putida F1 5191369 YP_001269015.1 CDS Pput_3707 NC_009512.1 4151641 4152855 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; benzoate transporter 4151641..4152855 Pseudomonas putida F1 5193177 YP_001269016.1 CDS Pput_3708 NC_009512.1 4152915 4154132 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4152915..4154132 Pseudomonas putida F1 5193178 YP_001269017.1 CDS Pput_3709 NC_009512.1 4154168 4155478 R hypothetical protein complement(4154168..4155478) Pseudomonas putida F1 5192730 YP_001269018.1 CDS Pput_3710 NC_009512.1 4155706 4156665 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; ATPase 4155706..4156665 Pseudomonas putida F1 5192731 YP_001269019.1 CDS Pput_3711 NC_009512.1 4156658 4157614 D PFAM: protein of unknown function DUF58; hypothetical protein 4156658..4157614 Pseudomonas putida F1 5194968 YP_001269020.1 CDS Pput_3712 NC_009512.1 4157611 4158105 D hypothetical protein 4157611..4158105 Pseudomonas putida F1 5194969 YP_001269021.1 CDS Pput_3713 NC_009512.1 4158098 4159174 D PFAM: von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 4158098..4159174 Pseudomonas putida F1 5193173 YP_001269022.1 CDS Pput_3714 NC_009512.1 4159171 4160889 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 4159171..4160889 Pseudomonas putida F1 5193174 YP_001269023.1 CDS Pput_3715 NC_009512.1 4160886 4162517 D hypothetical protein 4160886..4162517 Pseudomonas putida F1 5193322 YP_001269024.1 CDS Pput_3716 NC_009512.1 4162590 4163021 R hypothetical protein complement(4162590..4163021) Pseudomonas putida F1 5193323 YP_001269025.1 CDS Pput_3717 NC_009512.1 4163511 4164749 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; nuclease SbcCD subunit D 4163511..4164749 Pseudomonas putida F1 5190228 YP_001269026.1 CDS Pput_3718 NC_009512.1 4164746 4168390 D PFAM: SMC domain protein; SMC domain-containing protein 4164746..4168390 Pseudomonas putida F1 5190229 YP_001269027.1 CDS Pput_3719 NC_009512.1 4168387 4168980 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 4168387..4168980 Pseudomonas putida F1 5190460 YP_001269028.1 CDS Pput_3720 NC_009512.1 4169053 4169229 R hypothetical protein complement(4169053..4169229) Pseudomonas putida F1 5190461 YP_001269029.1 CDS Pput_3721 NC_009512.1 4169352 4170494 R hypothetical protein complement(4169352..4170494) Pseudomonas putida F1 5194498 YP_001269030.1 CDS Pput_3722 NC_009512.1 4170448 4170738 R hypothetical protein complement(4170448..4170738) Pseudomonas putida F1 5194499 YP_001269031.1 CDS Pput_3723 NC_009512.1 4170890 4173289 R RND efflux transporter complement(4170890..4173289) Pseudomonas putida F1 5193870 YP_001269032.1 CDS Pput_3724 NC_009512.1 4173286 4174326 R hypothetical protein complement(4173286..4174326) Pseudomonas putida F1 5193871 YP_001269033.1 CDS pepN NC_009512.1 4174598 4177255 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase-like; aminopeptidase N complement(4174598..4177255) Pseudomonas putida F1 5191395 YP_001269034.1 CDS Pput_3726 NC_009512.1 4177269 4178099 R hypothetical protein complement(4177269..4178099) Pseudomonas putida F1 5191396 YP_001269035.1 CDS Pput_3727 NC_009512.1 4178096 4178356 R PFAM: protein of unknown function DUF1315; hypothetical protein complement(4178096..4178356) Pseudomonas putida F1 5192619 YP_001269036.1 CDS Pput_3728 NC_009512.1 4178370 4179257 R PFAM: Rhomboid family protein; rhomboid family protein complement(4178370..4179257) Pseudomonas putida F1 5192620 YP_001269037.1 CDS Pput_3729 NC_009512.1 4179254 4180225 R PFAM: metallophosphoesterase; metallophosphoesterase complement(4179254..4180225) Pseudomonas putida F1 5194674 YP_001269038.1 CDS ppnK NC_009512.1 4180225 4181115 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(4180225..4181115) Pseudomonas putida F1 5194675 YP_001269039.1 CDS Pput_3731 NC_009512.1 4181204 4182136 D PFAM: Domain of unknown function DUF1853; hypothetical protein 4181204..4182136 Pseudomonas putida F1 5192673 YP_001269040.1 CDS Pput_3732 NC_009512.1 4182299 4182844 D PFAM: cytochrome B561; cytochrome B561 4182299..4182844 Pseudomonas putida F1 5192674 YP_001269041.1 CDS Pput_3733 NC_009512.1 4182835 4183728 R 1-aminocyclopropane-1-carboxylate deaminase complement(4182835..4183728) Pseudomonas putida F1 5191870 YP_001269042.1 CDS Pput_3734 NC_009512.1 4183965 4186001 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; NADH:flavin oxidoreductase complement(4183965..4186001) Pseudomonas putida F1 5191871 YP_001269043.1 CDS Pput_3735 NC_009512.1 4186265 4187173 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator complement(4186265..4187173) Pseudomonas putida F1 5191354 YP_001269044.1 CDS Pput_3736 NC_009512.1 4187309 4187710 R hypothetical protein complement(4187309..4187710) Pseudomonas putida F1 5191355 YP_001269045.1 CDS Pput_3737 NC_009512.1 4187997 4188920 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(4187997..4188920) Pseudomonas putida F1 5192157 YP_001269046.1 CDS Pput_3738 NC_009512.1 4189432 4190169 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4189432..4190169 Pseudomonas putida F1 5192158 YP_001269047.1 CDS Pput_3739 NC_009512.1 4190199 4190453 D hypothetical protein 4190199..4190453 Pseudomonas putida F1 5191541 YP_001269048.1 CDS Pput_3740 NC_009512.1 4190666 4191571 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4190666..4191571 Pseudomonas putida F1 5191542 YP_001269049.1 CDS Pput_3741 NC_009512.1 4191721 4191822 R hypothetical protein complement(4191721..4191822) Pseudomonas putida F1 5193709 YP_001269050.1 CDS Pput_3742 NC_009512.1 4191883 4192788 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4191883..4192788) Pseudomonas putida F1 5193710 YP_001269051.1 CDS Pput_3743 NC_009512.1 4193086 4193850 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4193086..4193850 Pseudomonas putida F1 5191799 YP_001269052.1 CDS Pput_3744 NC_009512.1 4193882 4194169 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4193882..4194169 Pseudomonas putida F1 5191800 YP_001269053.1 CDS Pput_3745 NC_009512.1 4194213 4195052 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4194213..4195052 Pseudomonas putida F1 5191954 YP_001269054.1 CDS Pput_3746 NC_009512.1 4195182 4195526 R hypothetical protein complement(4195182..4195526) Pseudomonas putida F1 5191955 YP_001269055.1 CDS Pput_3747 NC_009512.1 4195724 4196428 D PFAM: pili assembly chaperone; pili assembly chaperone 4195724..4196428 Pseudomonas putida F1 5192213 YP_001269056.1 CDS Pput_3748 NC_009512.1 4196454 4197443 D hypothetical protein 4196454..4197443 Pseudomonas putida F1 5192214 YP_001269057.1 CDS Pput_3749 NC_009512.1 4197514 4200321 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase 4197514..4200321 Pseudomonas putida F1 5191843 YP_001269058.1 CDS Pput_3750 NC_009512.1 4200318 4201511 D PFAM: EAL domain protein; response regulator receiver; response regulator receiver modulated diguanylate phosphodiesterase 4200318..4201511 Pseudomonas putida F1 5191844 YP_001269059.1 CDS Pput_3751 NC_009512.1 4201596 4204808 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 4201596..4204808 Pseudomonas putida F1 5192367 YP_001269060.1 CDS Pput_3752 NC_009512.1 4204878 4205525 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 4204878..4205525 Pseudomonas putida F1 5192368 YP_001269061.1 CDS Pput_3753 NC_009512.1 4205643 4206242 D PFAM: Fimbrial protein-like; fimbrial protein-like protein 4205643..4206242 Pseudomonas putida F1 5191039 YP_001269062.1 CDS Pput_3754 NC_009512.1 4206314 4207060 D PFAM: pili assembly chaperone; pili assembly chaperone 4206314..4207060 Pseudomonas putida F1 5191040 YP_001269063.1 CDS Pput_3755 NC_009512.1 4207144 4209699 D PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 4207144..4209699 Pseudomonas putida F1 5191246 YP_001269064.1 CDS Pput_3756 NC_009512.1 4209872 4210990 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4209872..4210990 Pseudomonas putida F1 5191247 YP_001269065.1 CDS Pput_3757 NC_009512.1 4210977 4212035 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4210977..4212035 Pseudomonas putida F1 5190312 YP_001269066.1 CDS Pput_3758 NC_009512.1 4212326 4213150 R hypothetical protein complement(4212326..4213150) Pseudomonas putida F1 5190313 YP_001269067.1 CDS Pput_3759 NC_009512.1 4214182 4214955 R PFAM: short-chain dehydrogenase/reductase SDR; oxidoreductase complement(4214182..4214955) Pseudomonas putida F1 5195191 YP_001269068.1 CDS Pput_3760 NC_009512.1 4214952 4216163 R catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase complement(4214952..4216163) Pseudomonas putida F1 5190502 YP_001269069.1 CDS Pput_3761 NC_009512.1 4216180 4217685 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(4216180..4217685) Pseudomonas putida F1 5192764 YP_001269070.1 CDS Pput_3762 NC_009512.1 4217728 4218285 R PFAM: Colicin V production protein; colicin V production protein complement(4217728..4218285) Pseudomonas putida F1 5192765 YP_001269071.1 CDS Pput_3763 NC_009512.1 4218483 4219127 R PFAM: Sporulation domain protein; sporulation domain-containing protein complement(4218483..4219127) Pseudomonas putida F1 5190391 YP_001269072.1 CDS Pput_3764 NC_009512.1 4219111 4220418 R TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(4219111..4220418) Pseudomonas putida F1 5190392 YP_001269073.1 CDS Pput_3765 NC_009512.1 4220418 4221311 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(4220418..4221311) Pseudomonas putida F1 5190282 YP_001269074.1 CDS Pput_3766 NC_009512.1 4221532 4222152 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(4221532..4222152) Pseudomonas putida F1 5190283 YP_001269075.1 CDS truA NC_009512.1 4222214 4223212 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(4222214..4223212) Pseudomonas putida F1 5191645 YP_001269076.1 CDS Pput_3768 NC_009512.1 4223212 4225947 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(4223212..4225947) Pseudomonas putida F1 5191646 YP_001269077.1 CDS Pput_3769 NC_009512.1 4226019 4227023 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(4226019..4227023) Pseudomonas putida F1 5192000 YP_001269078.1 CDS Pput_3770 NC_009512.1 4228123 4229235 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(4228123..4229235) Pseudomonas putida F1 5192001 YP_001269079.1 CDS Pput_3771 NC_009512.1 4229299 4230381 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(4229299..4230381) Pseudomonas putida F1 5193032 YP_001269080.1 CDS Pput_3772 NC_009512.1 4230436 4231200 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(4230436..4231200) Pseudomonas putida F1 5193033 YP_001269081.1 CDS leuD NC_009512.1 4231317 4231961 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(4231317..4231961) Pseudomonas putida F1 5194039 YP_001269082.1 CDS Pput_3774 NC_009512.1 4231958 4233391 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(4231958..4233391) Pseudomonas putida F1 5194040 YP_001269083.1 CDS Pput_3775 NC_009512.1 4233523 4234401 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4233523..4234401 Pseudomonas putida F1 5194346 YP_001269084.1 CDS Pput_3776 NC_009512.1 4234463 4237759 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 4234463..4237759 Pseudomonas putida F1 5194347 YP_001269085.1 CDS Pput_3777 NC_009512.1 4237849 4238292 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(4237849..4238292) Pseudomonas putida F1 5194201 YP_001269086.1 CDS Pput_3778 NC_009512.1 4238295 4238807 R hypothetical protein complement(4238295..4238807) Pseudomonas putida F1 5194202 YP_001269087.1 CDS Pput_3779 NC_009512.1 4239173 4240144 R PFAM: dihydrouridine synthase, DuS; dihydrouridine synthase, DuS complement(4239173..4240144) Pseudomonas putida F1 5194203 YP_001269088.1 CDS Pput_3780 NC_009512.1 4240196 4240630 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(4240196..4240630) Pseudomonas putida F1 5194204 YP_001269089.1 CDS Pput_3781 NC_009512.1 4240734 4241612 R hypothetical protein complement(4240734..4241612) Pseudomonas putida F1 5194542 YP_001269090.1 CDS Pput_3782 NC_009512.1 4241628 4242167 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(4241628..4242167) Pseudomonas putida F1 5194543 YP_001269091.1 CDS gltX NC_009512.1 4243407 4244888 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(4243407..4244888) Pseudomonas putida F1 5195269 YP_001269092.1 CDS Pput_3784 NC_009512.1 4244924 4246087 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 4244924..4246087 Pseudomonas putida F1 5195225 YP_001269093.1 CDS Pput_3785 NC_009512.1 4246077 4247627 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4246077..4247627 Pseudomonas putida F1 5195394 YP_001269094.1 CDS Pput_3786 NC_009512.1 4247755 4249770 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(4247755..4249770) Pseudomonas putida F1 5195395 YP_001269095.1 CDS Pput_3787 NC_009512.1 4250055 4251251 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4250055..4251251 Pseudomonas putida F1 5195384 YP_001269096.1 CDS Pput_3788 NC_009512.1 4251448 4251849 R PFAM: Cupin 2, conserved barrel domain protein; cupin complement(4251448..4251849) Pseudomonas putida F1 5194126 YP_001269097.1 CDS Pput_3789 NC_009512.1 4252188 4252745 R PFAM: protein of unknown function DUF1285; hypothetical protein complement(4252188..4252745) Pseudomonas putida F1 5195334 YP_001269098.1 CDS Pput_3790 NC_009512.1 4252756 4253361 R hypothetical protein complement(4252756..4253361) Pseudomonas putida F1 5195335 YP_001269099.1 CDS Pput_3791 NC_009512.1 4253428 4254396 R PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor synthesis domain-containing protein complement(4253428..4254396) Pseudomonas putida F1 5194682 YP_001269100.1 CDS Pput_3792 NC_009512.1 4254653 4255288 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(4254653..4255288) Pseudomonas putida F1 5194683 YP_001269101.1 CDS Pput_3793 NC_009512.1 4256272 4257054 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase complement(4256272..4257054) Pseudomonas putida F1 5195352 YP_001269102.1 CDS Pput_3794 NC_009512.1 4257085 4258071 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(4257085..4258071) Pseudomonas putida F1 5195353 YP_001269103.1 CDS tmk NC_009512.1 4258064 4258696 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(4258064..4258696) Pseudomonas putida F1 5195315 YP_001269104.1 CDS Pput_3796 NC_009512.1 4258706 4259926 R PFAM: aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(4258706..4259926) Pseudomonas putida F1 5195316 YP_001269105.1 CDS Pput_3797 NC_009512.1 4259931 4260746 R catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase complement(4259931..4260746) Pseudomonas putida F1 5194779 YP_001269106.2 CDS Pput_3798 NC_009512.1 4260746 4261990 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(4260746..4261990) Pseudomonas putida F1 5194780 YP_001269107.1 CDS acpP NC_009512.1 4262178 4262414 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(4262178..4262414) Pseudomonas putida F1 5194886 YP_001269108.1 CDS fabG NC_009512.1 4262618 4263358 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(4262618..4263358) Pseudomonas putida F1 5194887 YP_001269109.1 CDS Pput_3801 NC_009512.1 4263374 4264312 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase complement(4263374..4264312) Pseudomonas putida F1 5194884 YP_001269110.1 CDS Pput_3802 NC_009512.1 4264440 4265420 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(4264440..4265420) Pseudomonas putida F1 5194885 YP_001269111.1 CDS rpmF NC_009512.1 4265454 4265636 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(4265454..4265636) Pseudomonas putida F1 5194640 YP_001269112.1 CDS Pput_3804 NC_009512.1 4265650 4266177 R PFAM: protein of unknown function DUF177; hypothetical protein complement(4265650..4266177) Pseudomonas putida F1 5194641 YP_001269113.1 CDS Pput_3805 NC_009512.1 4266274 4266852 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 4266274..4266852 Pseudomonas putida F1 5194592 YP_001269114.1 CDS Pput_3806 NC_009512.1 4267061 4268050 R TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type complement(4267061..4268050) Pseudomonas putida F1 5194593 YP_001269115.1 CDS Pput_3807 NC_009512.1 4268057 4268731 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(4268057..4268731) Pseudomonas putida F1 5193625 YP_001269116.1 CDS Pput_3808 NC_009512.1 4268735 4269736 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(4268735..4269736) Pseudomonas putida F1 5193626 YP_001269117.1 CDS Pput_3809 NC_009512.1 4270489 4273761 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease 4270489..4273761 Pseudomonas putida F1 5190266 YP_001269118.1 CDS murB NC_009512.1 4274181 4275200 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4274181..4275200) Pseudomonas putida F1 5190267 YP_001269119.1 CDS Pput_3811 NC_009512.1 4275197 4275661 R PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase complement(4275197..4275661) Pseudomonas putida F1 5191181 YP_001269120.1 CDS Pput_3812 NC_009512.1 4275661 4276425 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(4275661..4276425) Pseudomonas putida F1 5191182 YP_001269121.1 CDS Pput_3813 NC_009512.1 4276422 4276607 R PFAM: protein of unknown function DUF343; hypothetical protein complement(4276422..4276607) Pseudomonas putida F1 5192505 YP_001269122.1 CDS lpxK NC_009512.1 4276652 4277653 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(4276652..4277653) Pseudomonas putida F1 5192506 YP_001269123.1 CDS Pput_3815 NC_009512.1 4277653 4278087 R PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(4277653..4278087) Pseudomonas putida F1 5193237 YP_001269124.1 CDS Pput_3816 NC_009512.1 4278084 4278758 R PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(4278084..4278758) Pseudomonas putida F1 5193238 YP_001269125.1 CDS Pput_3817 NC_009512.1 4278875 4281091 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 complement(4278875..4281091) Pseudomonas putida F1 5191876 YP_001269126.1 CDS Pput_3818 NC_009512.1 4281234 4281866 D hypothetical protein 4281234..4281866 Pseudomonas putida F1 5191877 YP_001269127.1 CDS Pput_3819 NC_009512.1 4281750 4282529 R PFAM: ABC-2 type transporter; ABC transporter complement(4281750..4282529) Pseudomonas putida F1 5191438 YP_001269128.1 CDS Pput_3820 NC_009512.1 4282526 4283458 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(4282526..4283458) Pseudomonas putida F1 5191439 YP_001269129.1 CDS Pput_3821 NC_009512.1 4283592 4284215 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(4283592..4284215) Pseudomonas putida F1 5191414 YP_001269130.1 CDS fadE NC_009512.1 4284595 4287042 D functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 4284595..4287042 Pseudomonas putida F1 5191415 YP_001269131.1 CDS Pput_3823 NC_009512.1 4287122 4287526 D hypothetical protein 4287122..4287526 Pseudomonas putida F1 5191282 YP_001269132.1 CDS Pput_3824 NC_009512.1 4287605 4288231 D PFAM: Fimbrial protein-like; fimbrial protein-like protein 4287605..4288231 Pseudomonas putida F1 5191283 YP_001269133.1 CDS Pput_3825 NC_009512.1 4288287 4289024 D PFAM: pili assembly chaperone; pili assembly chaperone 4288287..4289024 Pseudomonas putida F1 5191059 YP_001269134.1 CDS Pput_3826 NC_009512.1 4289039 4290496 R hypothetical protein complement(4289039..4290496) Pseudomonas putida F1 5191060 YP_001269135.1 CDS Pput_3827 NC_009512.1 4290568 4292763 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Pertactin; Autotransporter beta- domain protein; outer membrane autotransporter complement(4290568..4292763) Pseudomonas putida F1 5192734 YP_001269136.1 CDS Pput_3828 NC_009512.1 4292924 4294933 R hypothetical protein complement(4292924..4294933) Pseudomonas putida F1 5192735 YP_001269137.1 CDS Pput_3829 NC_009512.1 4295234 4299079 R PFAM: YD repeat-containing protein; YD repeat-/RHS repeat-containing protein complement(4295234..4299079) Pseudomonas putida F1 5190673 YP_001269138.1 CDS Pput_3830 NC_009512.1 4299135 4301966 R hypothetical protein complement(4299135..4301966) Pseudomonas putida F1 5190674 YP_001269139.1 CDS Pput_3831 NC_009512.1 4301969 4304404 R hypothetical protein complement(4301969..4304404) Pseudomonas putida F1 5193948 YP_001269140.1 CDS Pput_3832 NC_009512.1 4304578 4306386 R hypothetical protein complement(4304578..4306386) Pseudomonas putida F1 5193949 YP_001269141.1 CDS Pput_3833 NC_009512.1 4306744 4307151 D hypothetical protein 4306744..4307151 Pseudomonas putida F1 5190499 YP_001269142.1 CDS Pput_3834 NC_009512.1 4307156 4312327 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; YD repeat-containing protein 4307156..4312327 Pseudomonas putida F1 5190500 YP_001269143.1 CDS Pput_3835 NC_009512.1 4312598 4315171 D PFAM: fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 4312598..4315171 Pseudomonas putida F1 5190909 YP_001269144.1 CDS Pput_3836 NC_009512.1 4315171 4316259 D PFAM: Fimbrial protein-like; fimbrial protein-like protein 4315171..4316259 Pseudomonas putida F1 5190910 YP_001269145.1 CDS Pput_3837 NC_009512.1 4317181 4318023 D hypothetical protein 4317181..4318023 Pseudomonas putida F1 5193209 YP_001269146.1 CDS Pput_3838 NC_009512.1 4318099 4318581 R GAF domain-containing protein complement(4318099..4318581) Pseudomonas putida F1 5195367 YP_001269147.1 CDS Pput_3839 NC_009512.1 4318582 4319469 R PFAM: protein of unknown function DUF815; hypothetical protein complement(4318582..4319469) Pseudomonas putida F1 5194409 YP_001269148.1 CDS Pput_3840 NC_009512.1 4319674 4322031 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; histidine kinase 4319674..4322031 Pseudomonas putida F1 5194410 YP_001269149.1 CDS Pput_3841 NC_009512.1 4322021 4322509 R PFAM: glutathione peroxidase; glutathione peroxidase complement(4322021..4322509) Pseudomonas putida F1 5192629 YP_001269150.1 CDS Pput_3842 NC_009512.1 4322523 4322918 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(4322523..4322918) Pseudomonas putida F1 5192630 YP_001269151.1 CDS Pput_3843 NC_009512.1 4323086 4324297 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 4323086..4324297 Pseudomonas putida F1 5191847 YP_001269152.1 CDS Pput_3844 NC_009512.1 4324590 4325477 D putative metalloprotease; heat shock protein HtpX 4324590..4325477 Pseudomonas putida F1 5191848 YP_001269153.1 CDS Pput_3845 NC_009512.1 4325654 4326304 R catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase complement(4325654..4326304) Pseudomonas putida F1 5191324 YP_001269154.1 CDS Pput_3846 NC_009512.1 4326406 4327173 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 4326406..4327173 Pseudomonas putida F1 5191325 YP_001269155.1 CDS Pput_3847 NC_009512.1 4327315 4328994 R PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(4327315..4328994) Pseudomonas putida F1 5190760 YP_001269156.1 CDS Pput_3848 NC_009512.1 4329346 4330131 R hypothetical protein complement(4329346..4330131) Pseudomonas putida F1 5190761 YP_001269157.1 CDS Pput_3849 NC_009512.1 4330217 4331563 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 4330217..4331563 Pseudomonas putida F1 5193256 YP_001269158.1 CDS Pput_3850 NC_009512.1 4332942 4333160 R PFAM: protein of unknown function DUF1127; hypothetical protein complement(4332942..4333160) Pseudomonas putida F1 5193257 YP_001269159.1 CDS Pput_3851 NC_009512.1 4333257 4334108 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4333257..4334108 Pseudomonas putida F1 5194520 YP_001269160.1 CDS Pput_3852 NC_009512.1 4334137 4334922 R PFAM: protein of unknown function DUF81; hypothetical protein complement(4334137..4334922) Pseudomonas putida F1 5194521 YP_001269161.1 CDS Pput_3853 NC_009512.1 4335000 4335953 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4335000..4335953 Pseudomonas putida F1 5195249 YP_001269162.1 CDS Pput_3854 NC_009512.1 4336012 4336467 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 4336012..4336467 Pseudomonas putida F1 5195250 YP_001269163.1 CDS Pput_3855 NC_009512.1 4336608 4337036 D PFAM: OsmC family protein; OsmC family protein 4336608..4337036 Pseudomonas putida F1 5195086 YP_001269164.1 CDS Pput_3856 NC_009512.1 4337270 4337839 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(4337270..4337839) Pseudomonas putida F1 5195087 YP_001269165.1 CDS Pput_3857 NC_009512.1 4337888 4339021 R hypothetical protein complement(4337888..4339021) Pseudomonas putida F1 5194434 YP_001269166.1 CDS Pput_3858 NC_009512.1 4339255 4340031 D GreA/GreB family elongation factor 4339255..4340031 Pseudomonas putida F1 5194435 YP_001269167.1 CDS Pput_3859 NC_009512.1 4340146 4341084 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4340146..4341084) Pseudomonas putida F1 5194111 YP_001269168.1 CDS fabG NC_009512.1 4341203 4341952 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4341203..4341952 Pseudomonas putida F1 5194112 YP_001269169.1 CDS Pput_3861 NC_009512.1 4341991 4342875 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4341991..4342875) Pseudomonas putida F1 5192261 YP_001269170.1 CDS Pput_3862 NC_009512.1 4342982 4344169 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4342982..4344169 Pseudomonas putida F1 5192262 YP_001269171.1 CDS Pput_3863 NC_009512.1 4344385 4344765 D hypothetical protein 4344385..4344765 Pseudomonas putida F1 5191993 YP_001269172.1 CDS Pput_3864 NC_009512.1 4345070 4347202 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4345070..4347202 Pseudomonas putida F1 5191994 YP_001269173.1 CDS Pput_3865 NC_009512.1 4347980 4348669 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4347980..4348669 Pseudomonas putida F1 5191378 YP_001269174.1 CDS Pput_3866 NC_009512.1 4348789 4349502 D TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 4348789..4349502 Pseudomonas putida F1 5193259 YP_001269175.1 CDS Pput_3867 NC_009512.1 4349571 4350542 D PFAM: Mg2+ transporter protein, CorA family protein; CorA family protein Mg2+ transporter protein 4349571..4350542 Pseudomonas putida F1 5190718 YP_001269176.1 CDS Pput_3868 NC_009512.1 4350583 4351317 R PFAM: glutamine amidotransferase class-I; amidotransferase complement(4350583..4351317) Pseudomonas putida F1 5190719 YP_001269177.1 CDS Pput_3869 NC_009512.1 4351844 4352644 D hypothetical protein 4351844..4352644 Pseudomonas putida F1 5194000 YP_001269178.1 CDS Pput_3870 NC_009512.1 4352909 4353241 R PFAM: protein of unknown function DUF1260; hypothetical protein complement(4352909..4353241) Pseudomonas putida F1 5194001 YP_001269179.1 CDS Pput_3871 NC_009512.1 4353416 4353652 R hypothetical protein complement(4353416..4353652) Pseudomonas putida F1 5193124 YP_001269180.1 CDS Pput_3872 NC_009512.1 4353859 4355916 R PFAM: sulfatase; sulfatase complement(4353859..4355916) Pseudomonas putida F1 5193125 YP_001269181.1 CDS Pput_3873 NC_009512.1 4356056 4356247 R hypothetical protein complement(4356056..4356247) Pseudomonas putida F1 5193850 YP_001269182.1 CDS Pput_3874 NC_009512.1 4356374 4357312 D PFAM: zinc/iron permease; zinc/iron permease 4356374..4357312 Pseudomonas putida F1 5193851 YP_001269183.1 CDS Pput_3875 NC_009512.1 4357576 4358106 R hypothetical protein complement(4357576..4358106) Pseudomonas putida F1 5193286 YP_001269184.1 CDS Pput_3876 NC_009512.1 4358167 4358691 R PFAM: Ankyrin; ankyrin complement(4358167..4358691) Pseudomonas putida F1 5193287 YP_001269185.1 CDS Pput_3877 NC_009512.1 4358958 4359230 D hypothetical protein 4358958..4359230 Pseudomonas putida F1 5195543 YP_001269186.1 CDS Pput_3878 NC_009512.1 4359354 4359890 R hypothetical protein complement(4359354..4359890) Pseudomonas putida F1 5195544 YP_001269187.1 CDS Pput_3879 NC_009512.1 4359890 4361044 R PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4359890..4361044) Pseudomonas putida F1 5190491 YP_001269188.1 CDS Pput_3880 NC_009512.1 4361208 4362299 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(4361208..4362299) Pseudomonas putida F1 5190492 YP_001269189.1 CDS Pput_3881 NC_009512.1 4362539 4363501 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4362539..4363501 Pseudomonas putida F1 5193612 YP_001269190.1 CDS Pput_3882 NC_009512.1 4363567 4364349 D hypothetical protein 4363567..4364349 Pseudomonas putida F1 5193613 YP_001269191.1 CDS Pput_3883 NC_009512.1 4364622 4365572 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 4364622..4365572 Pseudomonas putida F1 5193860 YP_001269192.1 CDS Pput_3884 NC_009512.1 4365789 4366697 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(4365789..4366697) Pseudomonas putida F1 5193861 YP_001269193.1 CDS Pput_3885 NC_009512.1 4366879 4367469 D PFAM: isochorismatase hydrolase; isochorismatase hydrolase 4366879..4367469 Pseudomonas putida F1 5192578 YP_001269194.1 CDS Pput_3886 NC_009512.1 4367555 4367875 D hypothetical protein 4367555..4367875 Pseudomonas putida F1 5192579 YP_001269195.1 CDS Pput_3887 NC_009512.1 4368439 4368999 D PFAM: Smr protein/MutS2; Smr protein/MutS2 4368439..4368999 Pseudomonas putida F1 5191135 YP_001269196.1 CDS folE NC_009512.1 4369070 4369615 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 4369070..4369615 Pseudomonas putida F1 5191136 YP_001269197.1 CDS Pput_3889 NC_009512.1 4369675 4370046 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; glutaredoxin 4369675..4370046 Pseudomonas putida F1 5192895 YP_001269198.1 CDS Pput_3890 NC_009512.1 4370185 4370787 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein complement(4370185..4370787) Pseudomonas putida F1 5192896 YP_001269199.1 CDS Pput_3891 NC_009512.1 4370932 4372122 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; benzoate transporter 4370932..4372122 Pseudomonas putida F1 5194045 YP_001269200.1 CDS Pput_3892 NC_009512.1 4372219 4374159 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4372219..4374159) Pseudomonas putida F1 5194046 YP_001269201.1 CDS Pput_3893 NC_009512.1 4374565 4375308 D hypothetical protein 4374565..4375308 Pseudomonas putida F1 5194534 YP_001269202.1 CDS Pput_3894 NC_009512.1 4375452 4376213 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase complement(4375452..4376213) Pseudomonas putida F1 5194535 YP_001269203.1 CDS Pput_3895 NC_009512.1 4376391 4377392 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4376391..4377392 Pseudomonas putida F1 5192996 YP_001269204.1 CDS Pput_3896 NC_009512.1 4377763 4378464 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(4377763..4378464) Pseudomonas putida F1 5192997 YP_001269205.1 CDS Pput_3897 NC_009512.1 4378648 4378815 D hypothetical protein 4378648..4378815 Pseudomonas putida F1 5191849 YP_001269206.1 CDS Pput_3898 NC_009512.1 4378908 4379243 R TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; helix-hairpin-helix repeat-containing competence protein ComEA complement(4378908..4379243) Pseudomonas putida F1 5191850 YP_001269207.1 CDS Pput_3899 NC_009512.1 4380047 4380322 D hypothetical protein 4380047..4380322 Pseudomonas putida F1 5194116 YP_001269208.1 CDS Pput_3900 NC_009512.1 4380521 4381351 R hypothetical protein complement(4380521..4381351) Pseudomonas putida F1 5194117 YP_001269209.1 CDS Pput_3901 NC_009512.1 4381647 4382237 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(4381647..4382237) Pseudomonas putida F1 5192667 YP_001269210.1 CDS Pput_3902 NC_009512.1 4383205 4383891 D PFAM: ABC-2 type transporter; ABC transporter 4383205..4383891 Pseudomonas putida F1 5192668 YP_001269211.1 CDS Pput_3903 NC_009512.1 4383905 4384558 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4383905..4384558 Pseudomonas putida F1 5194982 YP_001269212.1 CDS Pput_3904 NC_009512.1 4384613 4385719 D PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 4384613..4385719 Pseudomonas putida F1 5194983 YP_001269213.1 CDS Pput_3905 NC_009512.1 4385739 4386803 D PFAM: polysaccharide export protein; polysaccharide export protein 4385739..4386803 Pseudomonas putida F1 5195418 YP_001269214.1 CDS Pput_3906 NC_009512.1 4386920 4389424 D PFAM: glycosyl transferase, family 2; TPR repeat-containing protein; Capsule polysaccharide biosynthesis protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; capsule polysaccharide biosynthesis protein 4386920..4389424 Pseudomonas putida F1 5195419 YP_001269215.1 CDS Pput_3907 NC_009512.1 4389826 4390836 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; UDP-glucose 4-epimerase 4389826..4390836 Pseudomonas putida F1 5191751 YP_001269216.1 CDS Pput_3908 NC_009512.1 4390886 4391728 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 4390886..4391728 Pseudomonas putida F1 5191752 YP_001269217.1 CDS Pput_3909 NC_009512.1 4391758 4393044 D TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 4391758..4393044 Pseudomonas putida F1 5192417 YP_001269218.1 CDS Pput_3910 NC_009512.1 4393090 4394022 R TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(4393090..4394022) Pseudomonas putida F1 5192418 YP_001269219.1 CDS Pput_3911 NC_009512.1 4394664 4395722 D hypothetical protein 4394664..4395722 Pseudomonas putida F1 5191651 YP_001269220.1 CDS Pput_3912 NC_009512.1 4396024 4398045 D PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4396024..4398045 Pseudomonas putida F1 5191652 YP_001269221.1 CDS Pput_3913 NC_009512.1 4397985 4399304 D PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4397985..4399304 Pseudomonas putida F1 5191880 YP_001269222.1 CDS Pput_3914 NC_009512.1 4399301 4400077 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4399301..4400077 Pseudomonas putida F1 5191881 YP_001269223.1 CDS Pput_3915 NC_009512.1 4400085 4401632 D PFAM: sulfatase; sulfatase 4400085..4401632 Pseudomonas putida F1 5190896 YP_001269224.1 CDS Pput_3916 NC_009512.1 4401637 4402203 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4401637..4402203 Pseudomonas putida F1 5190897 YP_001269225.1 CDS Pput_3917 NC_009512.1 4402203 4404347 D PFAM: Capsule polysaccharide biosynthesis protein; capsule polysaccharide biosynthesis protein 4402203..4404347 Pseudomonas putida F1 5190220 YP_001269226.1 CDS Pput_3918 NC_009512.1 4404351 4405394 D PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 4404351..4405394 Pseudomonas putida F1 5190221 YP_001269227.1 CDS Pput_3919 NC_009512.1 4406498 4406953 D hypothetical protein 4406498..4406953 Pseudomonas putida F1 5192386 YP_001269228.1 CDS Pput_3920 NC_009512.1 4406963 4408315 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aminotransferase, class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase complement(4406963..4408315) Pseudomonas putida F1 5192387 YP_001269229.1 CDS Pput_3921 NC_009512.1 4408325 4415824 R PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR; Beta-ketoacyl synthase-like; Acyl transferase; beta-ketoacyl synthase-like protein complement(4408325..4415824) Pseudomonas putida F1 5193544 YP_001269230.1 CDS Pput_3922 NC_009512.1 4416478 4417404 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4416478..4417404 Pseudomonas putida F1 5193545 YP_001269231.1 CDS Pput_3923 NC_009512.1 4417908 4418453 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 4417908..4418453 Pseudomonas putida F1 5195356 YP_001269232.1 CDS Pput_3924 NC_009512.1 4418453 4419280 D PFAM: ABC-2 type transporter; ABC transporter 4418453..4419280 Pseudomonas putida F1 5195357 YP_001269233.1 CDS Pput_3925 NC_009512.1 4419270 4420619 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4419270..4420619 Pseudomonas putida F1 5193895 YP_001269234.1 CDS Pput_3926 NC_009512.1 4420626 4425155 D PFAM: glycosyl transferase, family 2; Methyltransferase type 11; Methyltransferase type 12; glycosyl transferase family protein 4420626..4425155 Pseudomonas putida F1 5193896 YP_001269235.1 CDS Pput_3927 NC_009512.1 4425174 4427303 D hypothetical protein 4425174..4427303 Pseudomonas putida F1 5195348 YP_001269236.1 CDS Pput_3928 NC_009512.1 4427318 4428427 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase 4427318..4428427 Pseudomonas putida F1 5195349 YP_001269237.1 CDS Pput_3929 NC_009512.1 4428430 4429371 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4428430..4429371 Pseudomonas putida F1 5195392 YP_001269238.1 CDS Pput_3930 NC_009512.1 4429361 4430314 D PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; WxcM domain-containing protein 4429361..4430314 Pseudomonas putida F1 5195393 YP_001269239.1 CDS Pput_3931 NC_009512.1 4430319 4430708 D PFAM: GtrA family protein; GtrA family protein 4430319..4430708 Pseudomonas putida F1 5193651 YP_001269240.1 CDS Pput_3932 NC_009512.1 4430922 4431842 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(4430922..4431842) Pseudomonas putida F1 5193652 YP_001269241.1 CDS Pput_3933 NC_009512.1 4431879 4432769 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase complement(4431879..4432769) Pseudomonas putida F1 5193687 YP_001269242.1 CDS Pput_3934 NC_009512.1 4432766 4433671 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase complement(4432766..4433671) Pseudomonas putida F1 5193688 YP_001269243.1 CDS Pput_3935 NC_009512.1 4433668 4434744 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase complement(4433668..4434744) Pseudomonas putida F1 5194919 YP_001269244.1 CDS Pput_3936 NC_009512.1 4435005 4437017 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; polysaccharide biosynthesis protein CapD complement(4435005..4437017) Pseudomonas putida F1 5194920 YP_001269245.1 CDS Pput_3937 NC_009512.1 4437101 4438243 R PFAM: glycosyl transferase, family 4; glycosyl transferase family protein complement(4437101..4438243) Pseudomonas putida F1 5190296 YP_001269246.1 CDS Pput_3938 NC_009512.1 4438328 4439272 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(4438328..4439272) Pseudomonas putida F1 5190297 YP_001269247.1 CDS Pput_3939 NC_009512.1 4439407 4440837 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein complement(4439407..4440837) Pseudomonas putida F1 5190330 YP_001269248.1 CDS Pput_3940 NC_009512.1 4440940 4441203 R hypothetical protein complement(4440940..4441203) Pseudomonas putida F1 5190331 YP_001269249.1 CDS ihfB NC_009512.1 4441225 4441521 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(4441225..4441521) Pseudomonas putida F1 5194686 YP_001269250.1 CDS rpsA NC_009512.1 4442129 4443805 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(4442129..4443805) Pseudomonas putida F1 5194687 YP_001269251.1 CDS cmk NC_009512.1 4443930 4444607 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(4443930..4444607) Pseudomonas putida F1 5190679 YP_001269252.1 CDS Pput_3944 NC_009512.1 4444613 4446853 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase complement(4444613..4446853) Pseudomonas putida F1 5190680 YP_001269253.1 CDS Pput_3945 NC_009512.1 4447012 4448106 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; chorismate mutase complement(4447012..4448106) Pseudomonas putida F1 5191797 YP_001269254.1 CDS Pput_3946 NC_009512.1 4448108 4449295 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(4448108..4449295) Pseudomonas putida F1 5191798 YP_001269255.1 CDS Pput_3947 NC_009512.1 4449408 4452167 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(4449408..4452167) Pseudomonas putida F1 5190584 YP_001269256.1 CDS mtnA NC_009512.1 4452530 4453606 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(4452530..4453606) Pseudomonas putida F1 5190585 YP_001269257.1 CDS Pput_3949 NC_009512.1 4453717 4454415 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 4453717..4454415 Pseudomonas putida F1 5190574 YP_001269258.1 CDS Pput_3950 NC_009512.1 4454418 4455089 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 4454418..4455089 Pseudomonas putida F1 5190575 YP_001269259.1 CDS Pput_3951 NC_009512.1 4455187 4455927 D PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4455187..4455927 Pseudomonas putida F1 5192018 YP_001269260.1 CDS Pput_3952 NC_009512.1 4456046 4456861 R hypothetical protein complement(4456046..4456861) Pseudomonas putida F1 5192019 YP_001269261.1 CDS Pput_3953 NC_009512.1 4456862 4459318 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(4456862..4459318) Pseudomonas putida F1 5192935 YP_001269262.1 CDS Pput_3954 NC_009512.1 4459607 4461439 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(4459607..4461439) Pseudomonas putida F1 5192936 YP_001269263.1 CDS Pput_3955 NC_009512.1 4461432 4462064 R PFAM: DSBA oxidoreductase; DSBA oxidoreductase complement(4461432..4462064) Pseudomonas putida F1 5194676 YP_001269264.1 CDS Pput_3956 NC_009512.1 4462068 4463000 R PFAM: Rhodanese domain protein; hypothetical protein complement(4462068..4463000) Pseudomonas putida F1 5194677 YP_001269265.1 CDS Pput_3957 NC_009512.1 4463228 4463524 R PFAM: BolA family protein; BolA family protein complement(4463228..4463524) Pseudomonas putida F1 5190411 YP_001269266.1 CDS Pput_3958 NC_009512.1 4463535 4464059 R hypothetical protein complement(4463535..4464059) Pseudomonas putida F1 5190412 YP_001269267.1 CDS Pput_3959 NC_009512.1 4464214 4465608 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 4464214..4465608 Pseudomonas putida F1 5190834 YP_001269268.1 CDS Pput_3960 NC_009512.1 4465705 4466922 R hypothetical protein complement(4465705..4466922) Pseudomonas putida F1 5190835 YP_001269269.1 CDS Pput_3961 NC_009512.1 4466940 4467914 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(4466940..4467914) Pseudomonas putida F1 5194913 YP_001269270.1 CDS Pput_3962 NC_009512.1 4468151 4469644 R PFAM: protein of unknown function DUF344; hypothetical protein complement(4468151..4469644) Pseudomonas putida F1 5194914 YP_001269271.1 CDS mnmC NC_009512.1 4469781 4471745 D catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 4469781..4471745 Pseudomonas putida F1 5190956 YP_001269272.1 CDS Pput_3964 NC_009512.1 4471876 4473663 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 4471876..4473663 Pseudomonas putida F1 5190957 YP_001269273.1 CDS Pput_3965 NC_009512.1 4473667 4475412 D PFAM: GCN5-related N-acetyltransferase; glutathione synthase 4473667..4475412 Pseudomonas putida F1 5191170 YP_001269274.1 CDS Pput_3966 NC_009512.1 4475583 4476767 D PFAM: peptidase M20; peptidase M42 family protein; peptidase M42 family protein 4475583..4476767 Pseudomonas putida F1 5191171 YP_001269275.1 CDS Pput_3967 NC_009512.1 4476851 4477078 D PFAM: protein of unknown function UPF0270; hypothetical protein 4476851..4477078 Pseudomonas putida F1 5191934 YP_001269276.1 CDS Pput_3968 NC_009512.1 4477093 4477272 R PFAM: carbon storage regulator; carbon storage regulator CsrA complement(4477093..4477272) Pseudomonas putida F1 5191935 YP_001269277.1 CDS Pput_3969 NC_009512.1 4477393 4478202 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase complement(4477393..4478202) Pseudomonas putida F1 5194236 YP_001269278.1 CDS Pput_3970 NC_009512.1 4478409 4478561 D hypothetical protein 4478409..4478561 Pseudomonas putida F1 5194237 YP_001269279.1 CDS Pput_3971 NC_009512.1 4478635 4479798 R hypothetical protein complement(4478635..4479798) Pseudomonas putida F1 5190915 YP_001269280.1 CDS Pput_3972 NC_009512.1 4479810 4480583 R hypothetical protein complement(4479810..4480583) Pseudomonas putida F1 5190916 YP_001269281.1 CDS Pput_3973 NC_009512.1 4480638 4483106 R hypothetical protein complement(4480638..4483106) Pseudomonas putida F1 5194805 YP_001269282.1 CDS Pput_3974 NC_009512.1 4483181 4483672 R hypothetical protein complement(4483181..4483672) Pseudomonas putida F1 5194806 YP_001269283.1 CDS Pput_3975 NC_009512.1 4483741 4484226 R hypothetical protein complement(4483741..4484226) Pseudomonas putida F1 5190556 YP_001269284.1 CDS actP NC_009512.1 4484380 4486044 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(4484380..4486044) Pseudomonas putida F1 5190557 YP_001269285.1 CDS Pput_3977 NC_009512.1 4486041 4486352 R PFAM: protein of unknown function DUF485; hypothetical protein complement(4486041..4486352) Pseudomonas putida F1 5193731 YP_001269286.1 CDS Pput_3978 NC_009512.1 4486557 4487417 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein complement(4486557..4487417) Pseudomonas putida F1 5193732 YP_001269287.1 CDS Pput_3979 NC_009512.1 4487615 4489180 D exo-beta-1 3-glucanase-like protein 4487615..4489180 Pseudomonas putida F1 5195058 YP_001269288.1 CDS Pput_3980 NC_009512.1 4489256 4489621 R hypothetical protein complement(4489256..4489621) Pseudomonas putida F1 5195059 YP_001269289.1 CDS Pput_3981 NC_009512.1 4489812 4491110 D hypothetical protein 4489812..4491110 Pseudomonas putida F1 5190423 YP_001269290.1 CDS Pput_3982 NC_009512.1 4491103 4491930 D PFAM: VacJ family lipoprotein; VacJ family lipoprotein 4491103..4491930 Pseudomonas putida F1 5190424 YP_001269291.1 CDS Pput_3983 NC_009512.1 4492018 4493166 R PFAM: Patatin; patatin complement(4492018..4493166) Pseudomonas putida F1 5191588 YP_001269292.1 CDS Pput_3984 NC_009512.1 4493312 4494247 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(4493312..4494247) Pseudomonas putida F1 5191589 YP_001269293.1 CDS minC NC_009512.1 4494359 4495126 D blocks the formation of polar Z-ring septums; septum formation inhibitor 4494359..4495126 Pseudomonas putida F1 5190207 YP_001269294.1 CDS Pput_3986 NC_009512.1 4495236 4496048 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 4495236..4496048 Pseudomonas putida F1 5190208 YP_001269295.1 CDS minE NC_009512.1 4496052 4496306 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 4496052..4496306 Pseudomonas putida F1 5194642 YP_001269296.1 CDS Pput_3988 NC_009512.1 4496458 4497093 D PFAM: pseudouridine synthase; pseudouridine synthase 4496458..4497093 Pseudomonas putida F1 5194643 YP_001269297.1 CDS Pput_3989 NC_009512.1 4497262 4498551 D catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 4497262..4498551 Pseudomonas putida F1 5190958 YP_001269298.1 CDS Pput_3990 NC_009512.1 4498689 4498856 D hypothetical protein 4498689..4498856 Pseudomonas putida F1 5190959 YP_001269299.1 CDS Pput_3991 NC_009512.1 4498901 4501048 D PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4498901..4501048 Pseudomonas putida F1 5194704 YP_001269300.1 CDS Pput_3992 NC_009512.1 4501080 4501793 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(4501080..4501793) Pseudomonas putida F1 5194705 YP_001269301.1 CDS Pput_3993 NC_009512.1 4502121 4503185 D Fe3+ ABC transporter periplasmic component-like protein 4502121..4503185 Pseudomonas putida F1 5195278 YP_001269302.1 CDS Pput_3994 NC_009512.1 4503300 4504121 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; type I phosphodiesterase/nucleotide pyrophosphatase 4503300..4504121 Pseudomonas putida F1 5195279 YP_001269303.1 CDS Pput_3995 NC_009512.1 4504130 4504957 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4504130..4504957 Pseudomonas putida F1 5192613 YP_001269304.1 CDS Pput_3996 NC_009512.1 4504947 4505741 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4504947..4505741 Pseudomonas putida F1 5192614 YP_001269305.1 CDS Pput_3997 NC_009512.1 4505743 4506732 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 4505743..4506732 Pseudomonas putida F1 5193116 YP_001269306.1 CDS Pput_3998 NC_009512.1 4506747 4507400 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4506747..4507400 Pseudomonas putida F1 5193117 YP_001269307.1 CDS Pput_3999 NC_009512.1 4507520 4508482 R TIGRFAM: Quinone oxidoreductase putative, PIG3; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; quinone oxidoreductase complement(4507520..4508482) Pseudomonas putida F1 5192244 YP_001269308.1 CDS Pput_4000 NC_009512.1 4508589 4510703 D TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4508589..4510703 Pseudomonas putida F1 5192245 YP_001269309.1 CDS Pput_4001 NC_009512.1 4510821 4511894 D PFAM: EAL domain protein; diguanylate phosphodiesterase 4510821..4511894 Pseudomonas putida F1 5193920 YP_001269310.1 CDS Pput_4002 NC_009512.1 4512082 4512450 R hypothetical protein complement(4512082..4512450) Pseudomonas putida F1 5193921 YP_001269311.1 CDS Pput_4003 NC_009512.1 4512447 4512785 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(4512447..4512785) Pseudomonas putida F1 5190466 YP_001269312.1 CDS Pput_4004 NC_009512.1 4512900 4513337 R PFAM: protein of unknown function DUF1232; hypothetical protein complement(4512900..4513337) Pseudomonas putida F1 5190467 YP_001269313.1 CDS Pput_4005 NC_009512.1 4513626 4514378 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(4513626..4514378) Pseudomonas putida F1 5193774 YP_001269314.1 CDS Pput_4006 NC_009512.1 4514665 4515597 R TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4514665..4515597) Pseudomonas putida F1 5193775 YP_001269315.1 CDS Pput_4007 NC_009512.1 4515794 4517074 D hypothetical protein 4515794..4517074 Pseudomonas putida F1 5192480 YP_001269316.1 CDS Pput_4008 NC_009512.1 4517272 4517556 D hypothetical protein 4517272..4517556 Pseudomonas putida F1 5192481 YP_001269317.1 CDS Pput_4009 NC_009512.1 4517686 4518615 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(4517686..4518615) Pseudomonas putida F1 5190713 YP_001269318.1 CDS Pput_4010 NC_009512.1 4518911 4520251 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4518911..4520251 Pseudomonas putida F1 5190714 YP_001269319.1 CDS Pput_4011 NC_009512.1 4520472 4521182 D PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 4520472..4521182 Pseudomonas putida F1 5195284 YP_001269320.1 CDS Pput_4012 NC_009512.1 4521201 4521959 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4521201..4521959 Pseudomonas putida F1 5195285 YP_001269321.1 CDS Pput_4013 NC_009512.1 4521984 4522934 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4521984..4522934 Pseudomonas putida F1 5192538 YP_001269322.1 CDS Pput_4014 NC_009512.1 4523062 4523424 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; nitrite reductase (NAD(P)H) small subunit complement(4523062..4523424) Pseudomonas putida F1 5192539 YP_001269323.1 CDS Pput_4015 NC_009512.1 4523424 4525976 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; nitrite reductase (NAD(P)H) large subunit complement(4523424..4525976) Pseudomonas putida F1 5193538 YP_001269324.1 CDS Pput_4016 NC_009512.1 4526256 4530281 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; molybdopterin oxidoreductase complement(4526256..4530281) Pseudomonas putida F1 5193539 YP_001269325.1 CDS Pput_4017 NC_009512.1 4530600 4531397 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 4530600..4531397 Pseudomonas putida F1 5190405 YP_001269326.1 CDS rdgC NC_009512.1 4532193 4533149 D Required for efficient pilin antigenic variation; recombination associated protein 4532193..4533149 Pseudomonas putida F1 5191699 YP_001269327.1 CDS Pput_4019 NC_009512.1 4533544 4533861 D PFAM: small multidrug resistance protein; small multidrug resistance protein 4533544..4533861 Pseudomonas putida F1 5195290 YP_001269328.1 CDS Pput_4020 NC_009512.1 4533866 4535743 R PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; phospholipid/glycerol acyltransferase complement(4533866..4535743) Pseudomonas putida F1 5195291 YP_001269329.1 CDS Pput_4021 NC_009512.1 4535901 4536743 R PFAM: amidohydrolase 2; amidohydrolase 2 complement(4535901..4536743) Pseudomonas putida F1 5192312 YP_001269330.1 CDS Pput_4022 NC_009512.1 4536759 4538033 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4536759..4538033) Pseudomonas putida F1 5192313 YP_001269331.1 CDS Pput_4023 NC_009512.1 4538128 4538859 R PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(4538128..4538859) Pseudomonas putida F1 5193914 YP_001269332.1 CDS Pput_4024 NC_009512.1 4539055 4540269 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4539055..4540269 Pseudomonas putida F1 5193915 YP_001269333.1 CDS Pput_4025 NC_009512.1 4540396 4543875 D PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 4540396..4543875 Pseudomonas putida F1 5191338 YP_001269334.1 CDS Pput_4026 NC_009512.1 4543847 4545334 R PFAM: protein of unknown function DUF195; hypothetical protein complement(4543847..4545334) Pseudomonas putida F1 5191339 YP_001269335.1 CDS Pput_4027 NC_009512.1 4545765 4546184 R PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4545765..4546184) Pseudomonas putida F1 5193944 YP_001269336.1 CDS Pput_4028 NC_009512.1 4547136 4547360 D hypothetical protein 4547136..4547360 Pseudomonas putida F1 5193945 YP_001269337.1 CDS Pput_4029 NC_009512.1 4547610 4548092 D hypothetical protein 4547610..4548092 Pseudomonas putida F1 5193254 YP_001269338.1 CDS Pput_4030 NC_009512.1 4548239 4549519 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 4548239..4549519 Pseudomonas putida F1 5193255 YP_001269339.1 CDS Pput_4031 NC_009512.1 4549561 4550490 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4549561..4550490) Pseudomonas putida F1 5193107 YP_001269340.1 CDS Pput_4032 NC_009512.1 4550605 4550865 D hypothetical protein 4550605..4550865 Pseudomonas putida F1 5193108 YP_001269341.1 CDS Pput_4033 NC_009512.1 4551010 4551561 R PFAM: glutathione peroxidase; Redoxin domain protein; glutathione peroxidase complement(4551010..4551561) Pseudomonas putida F1 5193144 YP_001269342.1 CDS Pput_4034 NC_009512.1 4551608 4551730 R hypothetical protein complement(4551608..4551730) Pseudomonas putida F1 5193145 YP_001269343.1 CDS Pput_4035 NC_009512.1 4551727 4552929 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4551727..4552929) Pseudomonas putida F1 5193799 YP_001269344.1 CDS Pput_4036 NC_009512.1 4552993 4553397 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(4552993..4553397) Pseudomonas putida F1 5193800 YP_001269345.1 CDS Pput_4037 NC_009512.1 4553460 4554641 R PFAM: glycoside hydrolase, family 5; glycoside hydrolase complement(4553460..4554641) Pseudomonas putida F1 5193428 YP_001269346.1 CDS cobS NC_009512.1 4554801 4555523 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(4554801..4555523) Pseudomonas putida F1 5193429 YP_001269347.1 CDS Pput_4039 NC_009512.1 4555525 4556091 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(4555525..4556091) Pseudomonas putida F1 5192430 YP_001269348.1 CDS cobT NC_009512.1 4556088 4557143 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(4556088..4557143) Pseudomonas putida F1 5192431 YP_001269349.1 CDS cobU NC_009512.1 4557140 4557661 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(4557140..4557661) Pseudomonas putida F1 5191376 YP_001269350.1 CDS Pput_4042 NC_009512.1 4557663 4559117 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(4557663..4559117) Pseudomonas putida F1 5191377 YP_001269351.1 CDS Pput_4043 NC_009512.1 4559114 4560106 R cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase complement(4559114..4560106) Pseudomonas putida F1 5190359 YP_001269352.1 CDS cobD NC_009512.1 4560099 4561007 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(4560099..4561007) Pseudomonas putida F1 5190360 YP_001269353.1 CDS Pput_4045 NC_009512.1 4561004 4561654 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase complement(4561004..4561654) Pseudomonas putida F1 5191596 YP_001269354.1 CDS Pput_4046 NC_009512.1 4561651 4562946 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(4561651..4562946) Pseudomonas putida F1 5191597 YP_001269355.1 CDS Pput_4047 NC_009512.1 4562943 4563554 R catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(4562943..4563554) Pseudomonas putida F1 5191529 YP_001269356.1 CDS Pput_4048 NC_009512.1 4564017 4564550 R PFAM: NLP/P60 protein; NLP/P60 protein complement(4564017..4564550) Pseudomonas putida F1 5191530 YP_001269357.1 CDS Pput_4049 NC_009512.1 4564690 4565328 R PFAM: NLP/P60 protein; NLP/P60 protein complement(4564690..4565328) Pseudomonas putida F1 5194224 YP_001269358.1 CDS Pput_4050 NC_009512.1 4565456 4566163 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(4565456..4566163) Pseudomonas putida F1 5194225 YP_001269359.1 CDS Pput_4051 NC_009512.1 4566403 4567467 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(4566403..4567467) Pseudomonas putida F1 5194560 YP_001269360.1 CDS Pput_4052 NC_009512.1 4567489 4568556 R hypothetical protein complement(4567489..4568556) Pseudomonas putida F1 5194561 YP_001269361.1 CDS Pput_4053 NC_009512.1 4568877 4569935 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 4568877..4569935 Pseudomonas putida F1 5194907 YP_001269362.1 CDS purN NC_009512.1 4569935 4570588 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 4569935..4570588 Pseudomonas putida F1 5194908 YP_001269363.1 CDS Pput_4055 NC_009512.1 4570597 4571307 D hypothetical protein 4570597..4571307 Pseudomonas putida F1 5194852 YP_001269364.1 CDS Pput_4056 NC_009512.1 4571508 4571690 D hypothetical protein 4571508..4571690 Pseudomonas putida F1 5194853 YP_001269365.1 CDS Pput_4057 NC_009512.1 4571791 4574049 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase complement(4571791..4574049) Pseudomonas putida F1 5191864 YP_001269366.1 CDS Pput_4058 NC_009512.1 4574046 4574537 R hypothetical protein complement(4574046..4574537) Pseudomonas putida F1 5191865 YP_001269367.1 CDS Pput_4059 NC_009512.1 4574542 4575882 R hypothetical protein complement(4574542..4575882) Pseudomonas putida F1 5193811 YP_001269368.1 CDS Pput_4060 NC_009512.1 4576221 4576760 R hypothetical protein complement(4576221..4576760) Pseudomonas putida F1 5193812 YP_001269369.1 CDS mazG NC_009512.1 4576787 4577620 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase complement(4576787..4577620) Pseudomonas putida F1 5193548 YP_001269370.1 CDS Pput_4062 NC_009512.1 4577745 4579985 R TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA complement(4577745..4579985) Pseudomonas putida F1 5193549 YP_001269371.1 CDS rumA NC_009512.1 4580082 4581440 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(4580082..4581440) Pseudomonas putida F1 5194598 YP_001269372.1 CDS cysM NC_009512.1 4581441 4582379 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(4581441..4582379) Pseudomonas putida F1 5194599 YP_001269373.1 CDS Pput_4065 NC_009512.1 4582482 4583873 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase complement(4582482..4583873) Pseudomonas putida F1 5191302 YP_001269374.1 CDS Pput_4066 NC_009512.1 4583877 4584638 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(4583877..4584638) Pseudomonas putida F1 5191303 YP_001269375.1 CDS Pput_4067 NC_009512.1 4584790 4587543 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 4584790..4587543 Pseudomonas putida F1 5194481 YP_001269376.1 CDS Pput_4068 NC_009512.1 4587620 4588609 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4587620..4588609 Pseudomonas putida F1 5194482 YP_001269377.1 CDS Pput_4069 NC_009512.1 4588641 4589078 D hypothetical protein 4588641..4589078 Pseudomonas putida F1 5194393 YP_001269378.1 CDS Pput_4070 NC_009512.1 4589075 4589479 D PFAM: protein of unknown function DUF306, Meta and HslJ; hypothetical protein 4589075..4589479 Pseudomonas putida F1 5194394 YP_001269379.1 CDS Pput_4071 NC_009512.1 4589594 4590058 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase complement(4589594..4590058) Pseudomonas putida F1 5194230 YP_001269380.1 CDS Pput_4072 NC_009512.1 4590144 4590497 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 4590144..4590497 Pseudomonas putida F1 5194231 YP_001269381.1 CDS Pput_4073 NC_009512.1 4590494 4591099 D PFAM: flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 4590494..4591099 Pseudomonas putida F1 5190802 YP_001269382.1 CDS Pput_4074 NC_009512.1 4591092 4591505 D hypothetical protein 4591092..4591505 Pseudomonas putida F1 5190803 YP_001269383.1 CDS Pput_4075 NC_009512.1 4591609 4592280 R 3-methyladenine DNA glycosylase complement(4591609..4592280) Pseudomonas putida F1 5193442 YP_001269384.1 CDS Pput_4076 NC_009512.1 4592285 4593109 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(4592285..4593109) Pseudomonas putida F1 5193443 YP_001269385.1 CDS Pput_4077 NC_009512.1 4593373 4593972 D PFAM: protein of unknown function DUF1282; hypothetical protein 4593373..4593972 Pseudomonas putida F1 5191974 YP_001269386.1 CDS Pput_4078 NC_009512.1 4594104 4594598 D PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; hypothetical protein 4594104..4594598 Pseudomonas putida F1 5191975 YP_001269387.1 CDS Pput_4079 NC_009512.1 4594785 4595564 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(4594785..4595564) Pseudomonas putida F1 5192536 YP_001269388.1 CDS Pput_4080 NC_009512.1 4595682 4596608 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4595682..4596608 Pseudomonas putida F1 5192537 YP_001269389.1 CDS Pput_4081 NC_009512.1 4596605 4596970 R PFAM: diacylglycerol kinase; diacylglycerol kinase complement(4596605..4596970) Pseudomonas putida F1 5192281 YP_001269390.1 CDS Pput_4082 NC_009512.1 4597044 4597694 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator complement(4597044..4597694) Pseudomonas putida F1 5192282 YP_001269391.1 CDS Pput_4083 NC_009512.1 4597873 4598583 R PFAM: DTW domain containing protein; DTW domain-containing protein complement(4597873..4598583) Pseudomonas putida F1 5194179 YP_001269392.1 CDS Pput_4084 NC_009512.1 4598800 4599219 D hypothetical protein 4598800..4599219 Pseudomonas putida F1 5194180 YP_001269393.1 CDS Pput_4085 NC_009512.1 4599234 4599443 R hypothetical protein complement(4599234..4599443) Pseudomonas putida F1 5192572 YP_001269394.1 CDS Pput_4086 NC_009512.1 4599604 4600722 D PFAM: conserved hypothetical protein 730; hypothetical protein 4599604..4600722 Pseudomonas putida F1 5192573 YP_001269395.1 CDS recX NC_009512.1 4600989 4601459 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(4600989..4601459) Pseudomonas putida F1 5194626 YP_001269396.1 CDS recA NC_009512.1 4601481 4602548 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(4601481..4602548) Pseudomonas putida F1 5194627 YP_001269397.1 CDS Pput_4089 NC_009512.1 4602652 4603134 R PFAM: CinA domain protein; CinA domain-containing protein complement(4602652..4603134) Pseudomonas putida F1 5192463 YP_001269398.1 CDS Pput_4090 NC_009512.1 4603191 4604258 R hypothetical protein complement(4603191..4604258) Pseudomonas putida F1 5192464 YP_001269399.1 CDS Pput_4091 NC_009512.1 4605034 4605915 D PFAM: protein of unknown function DUF114; hypothetical protein 4605034..4605915 Pseudomonas putida F1 5193737 YP_001269400.1 CDS Pput_4092 NC_009512.1 4605952 4606257 R hypothetical protein complement(4605952..4606257) Pseudomonas putida F1 5193738 YP_001269401.1 CDS Pput_4093 NC_009512.1 4606254 4606547 R hypothetical protein complement(4606254..4606547) Pseudomonas putida F1 5192486 YP_001269402.1 CDS Pput_4094 NC_009512.1 4606621 4606845 R hypothetical protein complement(4606621..4606845) Pseudomonas putida F1 5192487 YP_001269403.1 CDS Pput_4095 NC_009512.1 4606859 4607353 R hypothetical protein complement(4606859..4607353) Pseudomonas putida F1 5191547 YP_001269404.1 CDS Pput_4096 NC_009512.1 4607350 4607799 R hypothetical protein complement(4607350..4607799) Pseudomonas putida F1 5191548 YP_001269405.1 CDS Pput_4097 NC_009512.1 4607896 4608702 R hypothetical protein complement(4607896..4608702) Pseudomonas putida F1 5193643 YP_001269406.1 CDS Pput_4098 NC_009512.1 4608727 4610664 R hypothetical protein complement(4608727..4610664) Pseudomonas putida F1 5193644 YP_001269407.1 CDS Pput_4099 NC_009512.1 4610708 4611190 R hypothetical protein complement(4610708..4611190) Pseudomonas putida F1 5195515 YP_001269408.1 CDS Pput_4100 NC_009512.1 4611202 4614300 R hypothetical protein complement(4611202..4614300) Pseudomonas putida F1 5195516 YP_001269409.1 CDS Pput_4101 NC_009512.1 4614272 4614691 R hypothetical protein complement(4614272..4614691) Pseudomonas putida F1 5194606 YP_001269410.1 CDS Pput_4102 NC_009512.1 4615075 4615557 R PFAM: Domain of unknown function DUF1833; hypothetical protein complement(4615075..4615557) Pseudomonas putida F1 5194607 YP_001269411.1 CDS Pput_4103 NC_009512.1 4615554 4617998 R hypothetical protein complement(4615554..4617998) Pseudomonas putida F1 5194440 YP_001269412.1 CDS Pput_4104 NC_009512.1 4618054 4618404 R hypothetical protein complement(4618054..4618404) Pseudomonas putida F1 5194441 YP_001269413.1 CDS Pput_4105 NC_009512.1 4618478 4618678 R hypothetical protein complement(4618478..4618678) Pseudomonas putida F1 5194882 YP_001269414.1 CDS Pput_4106 NC_009512.1 4618702 4619172 R hypothetical protein complement(4618702..4619172) Pseudomonas putida F1 5194883 YP_001269415.1 CDS Pput_4107 NC_009512.1 4619181 4619915 R hypothetical protein complement(4619181..4619915) Pseudomonas putida F1 5190990 YP_001269416.1 CDS Pput_4108 NC_009512.1 4619981 4620349 R hypothetical protein complement(4619981..4620349) Pseudomonas putida F1 5190991 YP_001269417.1 CDS Pput_4109 NC_009512.1 4620346 4620831 R TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; HK97 family phage protein complement(4620346..4620831) Pseudomonas putida F1 5192800 YP_001269418.1 CDS Pput_4110 NC_009512.1 4620824 4621168 R PFAM: phage head-tail adaptor, putative; phage head-tail adaptor complement(4620824..4621168) Pseudomonas putida F1 5192801 YP_001269419.1 CDS Pput_4111 NC_009512.1 4621165 4621488 R hypothetical protein complement(4621165..4621488) Pseudomonas putida F1 5192184 YP_001269420.1 CDS Pput_4112 NC_009512.1 4621485 4622429 R hypothetical protein complement(4621485..4622429) Pseudomonas putida F1 5192185 YP_001269421.1 CDS Pput_4113 NC_009512.1 4622416 4623783 R TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; HK97 family phage portal protein complement(4622416..4623783) Pseudomonas putida F1 5195218 YP_001269422.1 CDS Pput_4114 NC_009512.1 4623798 4624022 R hypothetical protein complement(4623798..4624022) Pseudomonas putida F1 5195219 YP_001269423.1 CDS Pput_4115 NC_009512.1 4624070 4626019 R PFAM: peptidase U35, phage prohead HK97; peptidase U35, phage prohead HK97 complement(4624070..4626019) Pseudomonas putida F1 5191708 YP_001269424.1 CDS Pput_4116 NC_009512.1 4626076 4627743 R PFAM: phage Terminase; phage terminase complement(4626076..4627743) Pseudomonas putida F1 5191709 YP_001269425.1 CDS Pput_4117 NC_009512.1 4627746 4628243 R hypothetical protein complement(4627746..4628243) Pseudomonas putida F1 5190342 YP_001269426.1 CDS Pput_4118 NC_009512.1 4628389 4628694 R PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease complement(4628389..4628694) Pseudomonas putida F1 5190343 YP_001269427.1 CDS Pput_4119 NC_009512.1 4628694 4628933 R hypothetical protein complement(4628694..4628933) Pseudomonas putida F1 5193100 YP_001269428.1 CDS Pput_4120 NC_009512.1 4628933 4629181 R hypothetical protein complement(4628933..4629181) Pseudomonas putida F1 5193101 YP_001269429.1 CDS Pput_4121 NC_009512.1 4629178 4629459 R PFAM: protein of unknown function DUF754; hypothetical protein complement(4629178..4629459) Pseudomonas putida F1 5195539 YP_001269430.1 CDS Pput_4122 NC_009512.1 4629460 4629834 R hypothetical protein complement(4629460..4629834) Pseudomonas putida F1 5195540 YP_001269431.1 CDS Pput_4123 NC_009512.1 4629994 4630680 R hypothetical protein complement(4629994..4630680) Pseudomonas putida F1 5192592 YP_001269432.1 CDS Pput_4124 NC_009512.1 4630691 4631008 R hypothetical protein complement(4630691..4631008) Pseudomonas putida F1 5192593 YP_001269433.1 CDS Pput_4125 NC_009512.1 4631005 4631172 R hypothetical protein complement(4631005..4631172) Pseudomonas putida F1 5193150 YP_001269434.1 CDS Pput_4126 NC_009512.1 4631169 4632467 R PFAM: phage integrase family protein; phage integrase family protein complement(4631169..4632467) Pseudomonas putida F1 5193151 YP_001269435.1 CDS Pput_4127 NC_009512.1 4632464 4632892 R PFAM: VRR-NUC; VRR-NUC domain-containing protein complement(4632464..4632892) Pseudomonas putida F1 5194043 YP_001269436.1 CDS Pput_4128 NC_009512.1 4632889 4633185 R PFAM: protein of unknown function DUF1364; hypothetical protein complement(4632889..4633185) Pseudomonas putida F1 5194044 YP_001269437.1 CDS Pput_4129 NC_009512.1 4633185 4633979 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(4633185..4633979) Pseudomonas putida F1 5192952 YP_001269438.1 CDS Pput_4130 NC_009512.1 4633969 4634826 R TIGRFAM: phage replication protein O; PFAM: phage replication protein O domain protein; phage replication protein O complement(4633969..4634826) Pseudomonas putida F1 5192953 YP_001269439.1 CDS Pput_4131 NC_009512.1 4635265 4636086 D PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative phage repressor 4635265..4636086 Pseudomonas putida F1 5192848 YP_001269440.1 CDS Pput_4132 NC_009512.1 4636132 4636446 R PFAM: protein of unknown function DUF1654; hypothetical protein complement(4636132..4636446) Pseudomonas putida F1 5192849 YP_001269441.1 CDS Pput_4133 NC_009512.1 4636853 4637077 D hypothetical protein 4636853..4637077 Pseudomonas putida F1 5192415 YP_001269442.1 CDS Pput_4134 NC_009512.1 4637208 4637591 D PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; response regulator receiver protein 4637208..4637591 Pseudomonas putida F1 5192416 YP_001269443.1 CDS Pput_4135 NC_009512.1 4637611 4637949 D hypothetical protein 4637611..4637949 Pseudomonas putida F1 5193840 YP_001269444.1 CDS Pput_4136 NC_009512.1 4637946 4638443 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4637946..4638443 Pseudomonas putida F1 5193841 YP_001269445.1 CDS Pput_4137 NC_009512.1 4638446 4638607 D hypothetical protein 4638446..4638607 Pseudomonas putida F1 5192409 YP_001269446.1 CDS Pput_4138 NC_009512.1 4638928 4639533 D hypothetical protein 4638928..4639533 Pseudomonas putida F1 5192410 YP_001269447.1 CDS Pput_4139 NC_009512.1 4639621 4640400 D hypothetical protein 4639621..4640400 Pseudomonas putida F1 5195118 YP_001269448.1 CDS Pput_4140 NC_009512.1 4640397 4641272 D hypothetical protein 4640397..4641272 Pseudomonas putida F1 5195119 YP_001269449.1 CDS Pput_4141 NC_009512.1 4641279 4642220 D hypothetical protein 4641279..4642220 Pseudomonas putida F1 5194053 YP_001269450.1 CDS Pput_4142 NC_009512.1 4642217 4642369 D hypothetical protein 4642217..4642369 Pseudomonas putida F1 5194054 YP_001269451.1 CDS Pput_4143 NC_009512.1 4642419 4643213 D hypothetical protein 4642419..4643213 Pseudomonas putida F1 5192842 YP_001269452.1 CDS Pput_4144 NC_009512.1 4643210 4643479 D hypothetical protein 4643210..4643479 Pseudomonas putida F1 5192843 YP_001269453.1 CDS Pput_4145 NC_009512.1 4643476 4643757 D hypothetical protein 4643476..4643757 Pseudomonas putida F1 5193245 YP_001269454.1 CDS Pput_4146 NC_009512.1 4643754 4644149 D hypothetical protein 4643754..4644149 Pseudomonas putida F1 5193246 YP_001269455.1 CDS Pput_4147 NC_009512.1 4644146 4644502 D hypothetical protein 4644146..4644502 Pseudomonas putida F1 5193264 YP_001269456.1 CDS Pput_4148 NC_009512.1 4644733 4645125 D hypothetical protein 4644733..4645125 Pseudomonas putida F1 5193265 YP_001269457.1 CDS Pput_4149 NC_009512.1 4645107 4645355 D hypothetical protein 4645107..4645355 Pseudomonas putida F1 5192286 YP_001269458.1 CDS Pput_4150 NC_009512.1 4645368 4646348 D PFAM: phage integrase family protein; phage integrase family protein 4645368..4646348 Pseudomonas putida F1 5192287 YP_001269459.1 CDS Pput_4151 NC_009512.1 4646532 4647257 R PFAM: Zeta toxin family protein; zeta toxin family protein complement(4646532..4647257) Pseudomonas putida F1 5192909 YP_001269460.1 CDS Pput_4152 NC_009512.1 4647450 4650023 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 4647450..4650023 Pseudomonas putida F1 5192910 YP_001269461.1 CDS Pput_4153 NC_009512.1 4650164 4650487 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4650164..4650487 Pseudomonas putida F1 5191102 YP_001269462.1 CDS Pput_4154 NC_009512.1 4651023 4652030 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(4651023..4652030) Pseudomonas putida F1 5191103 YP_001269463.1 CDS Pput_4155 NC_009512.1 4652139 4652927 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; peptidase M23B complement(4652139..4652927) Pseudomonas putida F1 5191458 YP_001269464.1 CDS pcm NC_009512.1 4653234 4653908 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(4653234..4653908) Pseudomonas putida F1 5191459 YP_001269465.1 CDS surE NC_009512.1 4653908 4654657 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(4653908..4654657) Pseudomonas putida F1 5193195 YP_001269466.1 CDS truD NC_009512.1 4654645 4655703 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(4654645..4655703) Pseudomonas putida F1 5193196 YP_001269467.1 CDS ispF NC_009512.1 4655700 4656173 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(4655700..4656173) Pseudomonas putida F1 5192655 YP_001269468.1 CDS Pput_4160 NC_009512.1 4656286 4657140 R TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(4656286..4657140) Pseudomonas putida F1 5192656 YP_001269469.1 CDS Pput_4161 NC_009512.1 4657149 4658261 R TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; S-(hydroxymethyl)glutathione dehydrogenase complement(4657149..4658261) Pseudomonas putida F1 5192633 YP_001269470.1 CDS Pput_4162 NC_009512.1 4658369 4659265 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4658369..4659265 Pseudomonas putida F1 5192634 YP_001269471.1 CDS ispD NC_009512.1 4659389 4660096 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(4659389..4660096) Pseudomonas putida F1 5191737 YP_001269472.1 CDS Pput_4164 NC_009512.1 4660093 4660374 R PFAM: Septum formation initiator; septum formation initiator complement(4660093..4660374) Pseudomonas putida F1 5191738 YP_001269473.1 CDS eno NC_009512.1 4660540 4661829 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(4660540..4661829) Pseudomonas putida F1 5192903 YP_001269474.1 CDS Pput_4166 NC_009512.1 4661984 4662829 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(4661984..4662829) Pseudomonas putida F1 5192904 YP_001269475.1 CDS pyrG NC_009512.1 4662833 4664461 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(4662833..4664461) Pseudomonas putida F1 5192901 YP_001269476.1 CDS Pput_4168 NC_009512.1 4664543 4664683 R hypothetical protein complement(4664543..4664683) Pseudomonas putida F1 5192902 YP_001269477.1 CDS Pput_4169 NC_009512.1 4664729 4666012 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946, PP-loop ATpase; tRNA(Ile)-lysidine synthetase complement(4664729..4666012) Pseudomonas putida F1 5193496 YP_001269478.1 CDS Pput_4170 NC_009512.1 4666182 4667135 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(4666182..4667135) Pseudomonas putida F1 5193497 YP_001269479.1 CDS dnaE NC_009512.1 4667236 4670760 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(4667236..4670760) Pseudomonas putida F1 5192776 YP_001269480.1 CDS rnhB NC_009512.1 4670947 4671570 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(4670947..4671570) Pseudomonas putida F1 5192777 YP_001269481.1 CDS lpxB NC_009512.1 4671572 4672699 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(4671572..4672699) Pseudomonas putida F1 5193276 YP_001269482.1 CDS Pput_4174 NC_009512.1 4672701 4673477 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(4672701..4673477) Pseudomonas putida F1 5193277 YP_001269483.1 CDS fabZ NC_009512.1 4673474 4673914 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(4673474..4673914) Pseudomonas putida F1 5193342 YP_001269484.1 CDS lpxD NC_009512.1 4674029 4675084 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(4674029..4675084) Pseudomonas putida F1 5193343 YP_001269485.1 CDS Pput_4177 NC_009512.1 4675086 4675589 R PFAM: outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(4675086..4675589) Pseudomonas putida F1 5191252 YP_001269486.1 CDS Pput_4178 NC_009512.1 4675634 4677994 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) complement(4675634..4677994) Pseudomonas putida F1 5191253 YP_001269487.1 CDS Pput_4179 NC_009512.1 4678068 4679420 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease complement(4678068..4679420) Pseudomonas putida F1 5192754 YP_001269488.1 CDS Pput_4180 NC_009512.1 4679493 4680695 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(4679493..4680695) Pseudomonas putida F1 5192755 YP_001269489.1 CDS Pput_4181 NC_009512.1 4680680 4681495 R PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(4680680..4681495) Pseudomonas putida F1 5191938 YP_001269490.1 CDS Pput_4182 NC_009512.1 4681495 4682250 R TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(4681495..4682250) Pseudomonas putida F1 5191939 YP_001269491.1 CDS frr NC_009512.1 4682266 4682823 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(4682266..4682823) Pseudomonas putida F1 5191514 YP_001269492.1 CDS pyrH NC_009512.1 4682820 4683563 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(4682820..4683563) Pseudomonas putida F1 5191515 YP_001269493.1 CDS tsf NC_009512.1 4683745 4684608 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(4683745..4684608) Pseudomonas putida F1 5192208 YP_001269494.1 CDS rpsB NC_009512.1 4684794 4685531 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(4684794..4685531) Pseudomonas putida F1 5192209 YP_001269495.1 CDS Pput_4187 NC_009512.1 4685878 4686660 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 4685878..4686660 Pseudomonas putida F1 5192564 YP_001269496.1 CDS glnD NC_009512.1 4686702 4689404 D Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 4686702..4689404 Pseudomonas putida F1 5192565 YP_001269497.1 CDS Pput_4189 NC_009512.1 4689435 4690631 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 4689435..4690631 Pseudomonas putida F1 5191874 YP_001269498.1 CDS Pput_4190 NC_009512.1 4690737 4692383 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; Na+/H+ antiporter complement(4690737..4692383) Pseudomonas putida F1 5191875 YP_001269499.1 CDS Pput_4191 NC_009512.1 4692635 4692913 D PFAM: plasmid maintenance system killer; plasmid maintenance system killer protein 4692635..4692913 Pseudomonas putida F1 5193140 YP_001269500.1 CDS Pput_4192 NC_009512.1 4692922 4693221 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; XRE family plasmid maintenance system antidote protein 4692922..4693221 Pseudomonas putida F1 5193141 YP_001269501.1 CDS Pput_4193 NC_009512.1 4693337 4693693 D PFAM: arsenate reductase and related; arsenate reductase-like protein 4693337..4693693 Pseudomonas putida F1 5192016 YP_001269502.1 CDS Pput_4194 NC_009512.1 4693725 4694759 D tetrahydrodipicolinate N-succinyltransferase-like protein 4693725..4694759 Pseudomonas putida F1 5192017 YP_001269503.1 CDS Pput_4195 NC_009512.1 4694841 4696046 D PFAM: aminotransferase, class V; class V aminotransferase 4694841..4696046 Pseudomonas putida F1 5192750 YP_001269504.1 CDS Pput_4196 NC_009512.1 4696043 4696453 D PFAM: Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 4696043..4696453 Pseudomonas putida F1 5192751 YP_001269505.1 CDS Pput_4197 NC_009512.1 4696562 4697371 R PFAM: UBA/THIF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(4696562..4697371) Pseudomonas putida F1 5192990 YP_001269506.1 CDS Pput_4198 NC_009512.1 4697491 4700082 D PFAM: glycoside hydrolase, family 17; glycosyl transferase, family 2; glycosyl transferase family protein 4697491..4700082 Pseudomonas putida F1 5192991 YP_001269507.1 CDS Pput_4199 NC_009512.1 4700273 4701424 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 4700273..4701424 Pseudomonas putida F1 5191845 YP_001269508.1 CDS Pput_4200 NC_009512.1 4701424 4702236 D PFAM: Methyltransferase type 11; Methyltransferase type 12; rRNA (guanine-N(1)-)-methyltransferase 4701424..4702236 Pseudomonas putida F1 5191846 YP_001269509.1 CDS Pput_4201 NC_009512.1 4702254 4702631 D hypothetical protein 4702254..4702631 Pseudomonas putida F1 5193154 YP_001269510.1 CDS Pput_4202 NC_009512.1 4702754 4702963 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(4702754..4702963) Pseudomonas putida F1 5193155 YP_001269511.1 CDS Pput_4203 NC_009512.1 4703197 4705683 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4703197..4705683 Pseudomonas putida F1 5192554 YP_001269512.1 CDS Pput_4204 NC_009512.1 4705760 4706158 D hypothetical protein 4705760..4706158 Pseudomonas putida F1 5192555 YP_001269513.1 CDS Pput_4205 NC_009512.1 4706192 4706878 D hypothetical protein 4706192..4706878 Pseudomonas putida F1 5192677 YP_001269514.1 CDS Pput_4206 NC_009512.1 4707191 4710256 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(4707191..4710256) Pseudomonas putida F1 5192678 YP_001269515.1 CDS Pput_4207 NC_009512.1 4710263 4711363 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(4710263..4711363) Pseudomonas putida F1 5194469 YP_001269516.1 CDS Pput_4208 NC_009512.1 4711614 4712255 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4711614..4712255 Pseudomonas putida F1 5194470 YP_001269517.1 CDS Pput_4209 NC_009512.1 4712325 4713101 R PFAM: protein of unknown function DUF548; hypothetical protein complement(4712325..4713101) Pseudomonas putida F1 5194820 YP_001269518.1 CDS Pput_4210 NC_009512.1 4713206 4713826 D hypothetical protein 4713206..4713826 Pseudomonas putida F1 5194821 YP_001269519.1 CDS Pput_4211 NC_009512.1 4713829 4714518 R PFAM: Extensin family protein; extensin family protein complement(4713829..4714518) Pseudomonas putida F1 5194293 YP_001269520.1 CDS Pput_4212 NC_009512.1 4714518 4715348 R PEP phosphonomutase-like protein complement(4714518..4715348) Pseudomonas putida F1 5194294 YP_001269521.1 CDS Pput_4213 NC_009512.1 4715377 4716246 R PFAM: protein of unknown function DUF72; hypothetical protein complement(4715377..4716246) Pseudomonas putida F1 5191535 YP_001269522.1 CDS Pput_4214 NC_009512.1 4716250 4716540 R hypothetical protein complement(4716250..4716540) Pseudomonas putida F1 5191536 YP_001269523.1 CDS Pput_4215 NC_009512.1 4716672 4717346 R PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease complement(4716672..4717346) Pseudomonas putida F1 5192514 YP_001269524.1 CDS adk NC_009512.1 4717618 4718268 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(4717618..4718268) Pseudomonas putida F1 5192515 YP_001269525.1 CDS Pput_4217 NC_009512.1 4718526 4721153 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4718526..4721153) Pseudomonas putida F1 5194041 YP_001269526.1 CDS Pput_4218 NC_009512.1 4721414 4721758 D hypothetical protein 4721414..4721758 Pseudomonas putida F1 5194042 YP_001269527.1 CDS Pput_4219 NC_009512.1 4722050 4722448 D hypothetical protein 4722050..4722448 Pseudomonas putida F1 5190748 YP_001269528.1 CDS Pput_4220 NC_009512.1 4722499 4723290 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 4722499..4723290 Pseudomonas putida F1 5190749 YP_001269529.1 CDS Pput_4221 NC_009512.1 4723468 4723794 R hypothetical protein complement(4723468..4723794) Pseudomonas putida F1 5191858 YP_001269530.1 CDS Pput_4222 NC_009512.1 4723791 4724651 R alpha/beta fold family hydrolase-like protein complement(4723791..4724651) Pseudomonas putida F1 5191859 YP_001269531.1 CDS Pput_4223 NC_009512.1 4724686 4726014 R PFAM: protein of unknown function DUF1704; hypothetical protein complement(4724686..4726014) Pseudomonas putida F1 5192691 YP_001269532.1 CDS Pput_4224 NC_009512.1 4726103 4726651 R hypothetical protein complement(4726103..4726651) Pseudomonas putida F1 5192692 YP_001269533.1 CDS Pput_4225 NC_009512.1 4726682 4727386 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(4726682..4727386) Pseudomonas putida F1 5191292 YP_001269534.1 CDS lysS NC_009512.1 4727565 4729067 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(4727565..4729067) Pseudomonas putida F1 5191293 YP_001269535.1 CDS Pput_4227 NC_009512.1 4729161 4730075 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 complement(4729161..4730075) Pseudomonas putida F1 5195103 YP_001269536.1 CDS Pput_4228 NC_009512.1 4730394 4731398 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase complement(4730394..4731398) Pseudomonas putida F1 5195104 YP_001269537.1 CDS Pput_4229 NC_009512.1 4731450 4732463 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4731450..4732463) Pseudomonas putida F1 5195404 YP_001269538.1 CDS Pput_4230 NC_009512.1 4732460 4734757 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; CheA signal transduction histidine kinase complement(4732460..4734757) Pseudomonas putida F1 5195405 YP_001269539.1 CDS Pput_4231 NC_009512.1 4734754 4735419 R PFAM: CheW domain protein; putative CheW protein complement(4734754..4735419) Pseudomonas putida F1 5193458 YP_001269540.1 CDS Pput_4232 NC_009512.1 4735416 4736690 R PFAM: MCP methyltransferase, CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; protein-glutamate O-methyltransferase complement(4735416..4736690) Pseudomonas putida F1 5193459 YP_001269541.1 CDS Pput_4233 NC_009512.1 4736687 4737193 R PFAM: CheW domain protein; putative CheW protein complement(4736687..4737193) Pseudomonas putida F1 5192353 YP_001269542.1 CDS Pput_4234 NC_009512.1 4737199 4738821 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(4737199..4738821) Pseudomonas putida F1 5192354 YP_001269543.1 CDS Pput_4235 NC_009512.1 4738992 4739672 R PFAM: protein of unknown function DUF533; hypothetical protein complement(4738992..4739672) Pseudomonas putida F1 5191051 YP_001269544.1 CDS Pput_4236 NC_009512.1 4739889 4741040 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 4739889..4741040 Pseudomonas putida F1 5191052 YP_001269545.1 CDS Pput_4237 NC_009512.1 4741191 4742222 D TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4741191..4742222 Pseudomonas putida F1 5194746 YP_001269546.1 CDS Pput_4238 NC_009512.1 4742224 4743135 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4742224..4743135 Pseudomonas putida F1 5194747 YP_001269547.1 CDS Pput_4239 NC_009512.1 4743125 4743931 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4743125..4743931 Pseudomonas putida F1 5190539 YP_001269548.2 CDS Pput_4240 NC_009512.1 4743949 4745373 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 4743949..4745373 Pseudomonas putida F1 5190540 YP_001269549.1 CDS Pput_4241 NC_009512.1 4745577 4745756 D hypothetical protein 4745577..4745756 Pseudomonas putida F1 5194815 YP_001269550.1 CDS Pput_4242 NC_009512.1 4745753 4746085 D PFAM: HicB family protein; HicB family protein 4745753..4746085 Pseudomonas putida F1 5194816 YP_001269551.1 CDS Pput_4243 NC_009512.1 4746154 4747260 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase complement(4746154..4747260) Pseudomonas putida F1 5191238 YP_001269552.1 CDS Pput_4244 NC_009512.1 4747731 4749440 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ complement(4747731..4749440) Pseudomonas putida F1 5191239 YP_001269553.1 CDS Pput_4245 NC_009512.1 4749449 4749991 R PFAM: YaeQ family protein; YaeQ family protein complement(4749449..4749991) Pseudomonas putida F1 5193844 YP_001269554.1 CDS Pput_4246 NC_009512.1 4750122 4751321 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4750122..4751321 Pseudomonas putida F1 5193845 YP_001269555.1 CDS Pput_4247 NC_009512.1 4751342 4752217 D hypothetical protein 4751342..4752217 Pseudomonas putida F1 5192687 YP_001269556.1 CDS Pput_4248 NC_009512.1 4752405 4752686 R hypothetical protein complement(4752405..4752686) Pseudomonas putida F1 5192688 YP_001269557.1 CDS Pput_4249 NC_009512.1 4752766 4753185 R response regulator receiver protein complement(4752766..4753185) Pseudomonas putida F1 5190986 YP_001269558.1 CDS Pput_4250 NC_009512.1 4753316 4754725 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(4753316..4754725) Pseudomonas putida F1 5190987 YP_001269559.1 CDS Pput_4251 NC_009512.1 4754785 4756089 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(4754785..4756089) Pseudomonas putida F1 5193568 YP_001269560.1 CDS Pput_4252 NC_009512.1 4756173 4756916 R thiol:disulfide interchange protein DsbC complement(4756173..4756916) Pseudomonas putida F1 5193569 YP_001269561.1 CDS xerD NC_009512.1 4757070 4757966 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(4757070..4757966) Pseudomonas putida F1 5191344 YP_001269562.1 CDS Pput_4254 NC_009512.1 4758035 4759840 D PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 4758035..4759840 Pseudomonas putida F1 5191345 YP_001269563.1 CDS Pput_4255 NC_009512.1 4759844 4760251 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(4759844..4760251) Pseudomonas putida F1 5191426 YP_001269564.1 CDS rplS NC_009512.1 4760346 4760696 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(4760346..4760696) Pseudomonas putida F1 5191427 YP_001269565.1 CDS trmD NC_009512.1 4760739 4761491 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(4760739..4761491) Pseudomonas putida F1 5191543 YP_001269566.1 CDS rimM NC_009512.1 4761495 4762031 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(4761495..4762031) Pseudomonas putida F1 5191544 YP_001269567.1 CDS rpsP NC_009512.1 4762037 4762288 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(4762037..4762288) Pseudomonas putida F1 5192665 YP_001269568.1 CDS Pput_4260 NC_009512.1 4762547 4763923 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(4762547..4763923) Pseudomonas putida F1 5192666 YP_001269569.1 CDS Pput_4261 NC_009512.1 4764194 4765045 D PFAM: cytochrome c assembly protein; cytochrome c assembly protein 4764194..4765045 Pseudomonas putida F1 5193596 YP_001269570.1 CDS Pput_4262 NC_009512.1 4765055 4766260 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; transporter-associated protein 4765055..4766260 Pseudomonas putida F1 5193597 YP_001269571.1 CDS Pput_4263 NC_009512.1 4766531 4767832 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 4766531..4767832 Pseudomonas putida F1 5191983 YP_001269572.1 CDS purT NC_009512.1 4767972 4769153 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(4767972..4769153) Pseudomonas putida F1 5191984 YP_001269573.1 CDS Pput_4265 NC_009512.1 4769230 4769697 R hypothetical protein complement(4769230..4769697) Pseudomonas putida F1 5192436 YP_001269574.1 CDS Pput_4266 NC_009512.1 4769894 4770097 R PFAM: protein of unknown function DUF1289; hypothetical protein complement(4769894..4770097) Pseudomonas putida F1 5192437 YP_001269575.1 CDS Pput_4267 NC_009512.1 4770087 4770611 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(4770087..4770611) Pseudomonas putida F1 5194289 YP_001269576.1 CDS Pput_4268 NC_009512.1 4770656 4771288 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(4770656..4771288) Pseudomonas putida F1 5194290 YP_001269577.1 CDS Pput_4269 NC_009512.1 4771379 4771930 D PFAM: NUDIX hydrolase; NUDIX hydrolase 4771379..4771930 Pseudomonas putida F1 5194618 YP_001269578.1 CDS Pput_4270 NC_009512.1 4771953 4772507 D hypothetical protein 4771953..4772507 Pseudomonas putida F1 5194619 YP_001269579.1 CDS Pput_4271 NC_009512.1 4772668 4774350 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 4772668..4774350 Pseudomonas putida F1 5195431 YP_001269580.1 CDS Pput_4272 NC_009512.1 4774378 4778904 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; filamentous hemagglutinin outer membrane protein 4774378..4778904 Pseudomonas putida F1 5195432 YP_001269581.1 CDS Pput_4273 NC_009512.1 4779068 4779703 R hypothetical protein complement(4779068..4779703) Pseudomonas putida F1 5194936 YP_001269582.1 CDS Pput_4274 NC_009512.1 4779705 4779926 R hypothetical protein complement(4779705..4779926) Pseudomonas putida F1 5194937 YP_001269583.1 CDS Pput_4275 NC_009512.1 4780090 4782147 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 4780090..4782147 Pseudomonas putida F1 5194584 YP_001269584.1 CDS Pput_4276 NC_009512.1 4782443 4783777 D PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 4782443..4783777 Pseudomonas putida F1 5194585 YP_001269585.1 CDS Pput_4277 NC_009512.1 4783808 4786219 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 4783808..4786219 Pseudomonas putida F1 5194528 YP_001269586.1 CDS Pput_4278 NC_009512.1 4786749 4789166 D TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 4786749..4789166 Pseudomonas putida F1 5194529 YP_001269587.1 CDS Pput_4279 NC_009512.1 4789318 4789710 D secreted protein-like protein 4789318..4789710 Pseudomonas putida F1 5194766 YP_001269588.1 CDS Pput_4280 NC_009512.1 4789800 4790543 D TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 4789800..4790543 Pseudomonas putida F1 5194767 YP_001269589.1 CDS Pput_4281 NC_009512.1 4790540 4791496 D TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 4790540..4791496 Pseudomonas putida F1 5193080 YP_001269590.1 CDS Pput_4282 NC_009512.1 4791566 4791769 R hypothetical protein complement(4791566..4791769) Pseudomonas putida F1 5193081 YP_001269591.1 CDS Pput_4283 NC_009512.1 4792079 4792753 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 4792079..4792753 Pseudomonas putida F1 5191496 YP_001269592.1 CDS Pput_4284 NC_009512.1 4792750 4794132 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 4792750..4794132 Pseudomonas putida F1 5191497 YP_001269593.1 CDS Pput_4285 NC_009512.1 4794258 4794980 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(4794258..4794980) Pseudomonas putida F1 5193414 YP_001269594.1 CDS recO NC_009512.1 4795042 4795725 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(4795042..4795725) Pseudomonas putida F1 5193415 YP_001269595.1 CDS era NC_009512.1 4795895 4796797 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(4795895..4796797) Pseudomonas putida F1 5190264 YP_001269596.1 CDS rnc NC_009512.1 4796790 4797479 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(4796790..4797479) Pseudomonas putida F1 5190265 YP_001269597.1 CDS Pput_4289 NC_009512.1 4797643 4798497 R TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(4797643..4798497) Pseudomonas putida F1 5192891 YP_001269598.1 CDS Pput_4290 NC_009512.1 4798503 4800293 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(4798503..4800293) Pseudomonas putida F1 5192892 YP_001269599.1 CDS Pput_4291 NC_009512.1 4800483 4801916 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(4800483..4801916) Pseudomonas putida F1 5191318 YP_001269600.1 CDS Pput_4292 NC_009512.1 4802092 4803057 R PFAM: MucB/RseB family protein; sigma E regulatory protein MucB/RseB complement(4802092..4803057) Pseudomonas putida F1 5191319 YP_001269601.1 CDS Pput_4293 NC_009512.1 4803070 4803660 R PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; anti sigma-E protein RseA complement(4803070..4803660) Pseudomonas putida F1 5192288 YP_001269602.1 CDS algU NC_009512.1 4803694 4804275 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU complement(4803694..4804275) Pseudomonas putida F1 5192289 YP_001269603.1 CDS Pput_4295 NC_009512.1 4804711 4806315 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 4804711..4806315 Pseudomonas putida F1 5191121 YP_001269604.1 CDS Pput_4296 NC_009512.1 4806434 4806892 R hypothetical protein complement(4806434..4806892) Pseudomonas putida F1 5191122 YP_001269605.1 CDS Pput_4297 NC_009512.1 4806876 4807130 R PFAM: protein of unknown function DUF339; hypothetical protein complement(4806876..4807130) Pseudomonas putida F1 5192651 YP_001269606.1 CDS Pput_4298 NC_009512.1 4807264 4808205 D PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 4807264..4808205 Pseudomonas putida F1 5192652 YP_001269607.1 CDS Pput_4299 NC_009512.1 4808255 4809067 D PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein 4808255..4809067 Pseudomonas putida F1 5190619 YP_001269608.1 CDS Pput_4300 NC_009512.1 4809133 4810512 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; integral membrane sensor signal transduction histidine kinase complement(4809133..4810512) Pseudomonas putida F1 5190620 YP_001269609.1 CDS Pput_4301 NC_009512.1 4810505 4811176 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(4810505..4811176) Pseudomonas putida F1 5193422 YP_001269610.1 CDS Pput_4302 NC_009512.1 4811377 4812666 D PFAM: outer membrane porin; outer membrane porin 4811377..4812666 Pseudomonas putida F1 5193423 YP_001269611.1 CDS Pput_4303 NC_009512.1 4812713 4813693 D PFAM: Uncharacterized protein UPF0065; hypothetical protein 4812713..4813693 Pseudomonas putida F1 5192617 YP_001269612.1 CDS Pput_4304 NC_009512.1 4813893 4814351 D hypothetical protein 4813893..4814351 Pseudomonas putida F1 5192618 YP_001269613.1 CDS Pput_4305 NC_009512.1 4814353 4815867 D PFAM: protein of unknown function DUF112, transmembrane; hypothetical protein 4814353..4815867 Pseudomonas putida F1 5192351 YP_001269614.1 CDS Pput_4306 NC_009512.1 4815860 4816915 D PFAM: putative ammonia monooxygenase; putative ammonia monooxygenase 4815860..4816915 Pseudomonas putida F1 5192352 YP_001269615.1 CDS Pput_4307 NC_009512.1 4817006 4818688 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; 5'-nucleotidase domain-containing protein 4817006..4818688 Pseudomonas putida F1 5193994 YP_001269616.1 CDS Pput_4308 NC_009512.1 4818715 4819407 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4818715..4819407) Pseudomonas putida F1 5193995 YP_001269617.1 CDS Pput_4309 NC_009512.1 4819534 4820640 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4819534..4820640 Pseudomonas putida F1 5190387 YP_001269618.1 CDS Pput_4310 NC_009512.1 4820685 4821134 R hypothetical protein complement(4820685..4821134) Pseudomonas putida F1 5190388 YP_001269619.1 CDS Pput_4311 NC_009512.1 4821347 4822828 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 4821347..4822828 Pseudomonas putida F1 5191029 YP_001269620.1 CDS Pput_4312 NC_009512.1 4822821 4823033 D hypothetical protein 4822821..4823033 Pseudomonas putida F1 5191030 YP_001269621.1 CDS Pput_4313 NC_009512.1 4823042 4823740 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; pseudouridine synthase 4823042..4823740 Pseudomonas putida F1 5192794 YP_001269622.1 CDS Pput_4315 NC_009512.1 4824076 4824963 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4824076..4824963 Pseudomonas putida F1 5193358 YP_001269623.1 CDS Pput_4316 NC_009512.1 4825359 4827065 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 4825359..4827065 Pseudomonas putida F1 5193359 YP_001269624.1 CDS Pput_4317 NC_009512.1 4827268 4828278 D hypothetical protein 4827268..4828278 Pseudomonas putida F1 5192761 YP_001269625.1 CDS Pput_4318 NC_009512.1 4828312 4829526 R hypothetical protein complement(4828312..4829526) Pseudomonas putida F1 5193354 YP_001269626.1 CDS Pput_4319 NC_009512.1 4829692 4830309 R PFAM: protein of unknown function DUF477; hypothetical protein complement(4829692..4830309) Pseudomonas putida F1 5193355 YP_001269627.1 CDS Pput_4320 NC_009512.1 4830496 4832787 D PFAM: glycoside hydrolase, family 3 domain protein; glycoside hydrolase family protein 4830496..4832787 Pseudomonas putida F1 5190888 YP_001269628.1 CDS Pput_4321 NC_009512.1 4832875 4834632 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 4832875..4834632 Pseudomonas putida F1 5190889 YP_001269629.1 CDS Pput_4322 NC_009512.1 4834626 4835960 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 4834626..4835960 Pseudomonas putida F1 5193764 YP_001269630.1 CDS Pput_4323 NC_009512.1 4836215 4837534 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily metabolite/H(+) symporter 4836215..4837534 Pseudomonas putida F1 5193765 YP_001269631.1 CDS Pput_4324 NC_009512.1 4837835 4838200 D hypothetical protein 4837835..4838200 Pseudomonas putida F1 5193610 YP_001269632.1 CDS Pput_4325 NC_009512.1 4838320 4838925 D hypothetical protein 4838320..4838925 Pseudomonas putida F1 5193611 YP_001269633.1 CDS Pput_4326 NC_009512.1 4838926 4839159 R hypothetical protein complement(4838926..4839159) Pseudomonas putida F1 5195126 YP_001269634.1 CDS Pput_4327 NC_009512.1 4839209 4839502 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(4839209..4839502) Pseudomonas putida F1 5195127 YP_001269635.1 CDS Pput_4328 NC_009512.1 4839705 4840625 D PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC-like transcriptional regulator 4839705..4840625 Pseudomonas putida F1 5195097 YP_001269636.1 CDS Pput_4329 NC_009512.1 4840749 4842386 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; hypothetical protein complement(4840749..4842386) Pseudomonas putida F1 5195098 YP_001269637.1 CDS Pput_4330 NC_009512.1 4842306 4842401 D hypothetical protein 4842306..4842401 Pseudomonas putida F1 5193766 YP_001269638.1 CDS Pput_4331 NC_009512.1 4842501 4843376 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4842501..4843376 Pseudomonas putida F1 5193767 YP_001269639.1 CDS Pput_4332 NC_009512.1 4843396 4844010 R PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; NAD-dependent epimerase/dehydratase complement(4843396..4844010) Pseudomonas putida F1 5190592 YP_001269640.1 CDS Pput_4333 NC_009512.1 4844194 4845102 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4844194..4845102 Pseudomonas putida F1 5190593 YP_001269641.1 CDS Pput_4334 NC_009512.1 4845335 4846204 R PEP phosphonomutase-like protein complement(4845335..4846204) Pseudomonas putida F1 5193550 YP_001269642.1 CDS Pput_4335 NC_009512.1 4846585 4848036 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 4846585..4848036 Pseudomonas putida F1 5193551 YP_001269643.1 CDS Pput_4336 NC_009512.1 4848148 4848780 R PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; TetR family transcriptional regulator complement(4848148..4848780) Pseudomonas putida F1 5194945 YP_001269644.1 CDS Pput_4337 NC_009512.1 4849038 4850192 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 4849038..4850192 Pseudomonas putida F1 5194946 YP_001269645.1 CDS Pput_4338 NC_009512.1 4850196 4853348 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4850196..4853348 Pseudomonas putida F1 5195155 YP_001269646.1 CDS Pput_4339 NC_009512.1 4853345 4854799 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4853345..4854799 Pseudomonas putida F1 5195156 YP_001269647.1 CDS Pput_4340 NC_009512.1 4855202 4856458 D PFAM: outer membrane porin; outer membrane porin 4855202..4856458 Pseudomonas putida F1 5190844 YP_001269648.1 CDS Pput_4341 NC_009512.1 4856702 4857226 D PFAM: protein of unknown function DUF962; hypothetical protein 4856702..4857226 Pseudomonas putida F1 5190845 YP_001269649.1 CDS Pput_4342 NC_009512.1 4857280 4857672 R TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase complement(4857280..4857672) Pseudomonas putida F1 5194079 YP_001269650.1 CDS Pput_4343 NC_009512.1 4857683 4858474 R TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; 3-oxoadipate enol-lactonase complement(4857683..4858474) Pseudomonas putida F1 5194080 YP_001269651.1 CDS Pput_4344 NC_009512.1 4858486 4859838 R Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase complement(4858486..4859838) Pseudomonas putida F1 5194465 YP_001269652.1 CDS Pput_4345 NC_009512.1 4859848 4861137 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily metabolite/H(+) symporter complement(4859848..4861137) Pseudomonas putida F1 5194466 YP_001269653.1 CDS Pput_4346 NC_009512.1 4861325 4862527 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(4861325..4862527) Pseudomonas putida F1 5191270 YP_001269654.1 CDS Pput_4347 NC_009512.1 4862854 4864200 R TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; benzoate transport complement(4862854..4864200) Pseudomonas putida F1 5191271 YP_001269655.1 CDS Pput_4348 NC_009512.1 4864521 4865396 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; beta-ketoadipate pathway transcriptional regulator complement(4864521..4865396) Pseudomonas putida F1 5193721 YP_001269656.1 CDS Pput_4349 NC_009512.1 4865875 4866075 D hypothetical protein 4865875..4866075 Pseudomonas putida F1 5193722 YP_001269657.1 CDS Pput_4350 NC_009512.1 4866370 4867863 D PFAM: phosphate transporter; phosphate transporter 4866370..4867863 Pseudomonas putida F1 5193152 YP_001269658.1 CDS Pput_4351 NC_009512.1 4867969 4869444 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(4867969..4869444) Pseudomonas putida F1 5193153 YP_001269659.1 CDS Pput_4352 NC_009512.1 4869614 4871488 D PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4869614..4871488 Pseudomonas putida F1 5194307 YP_001269660.1 CDS Pput_4353 NC_009512.1 4871654 4872775 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4871654..4872775 Pseudomonas putida F1 5194308 YP_001269661.1 CDS Pput_4354 NC_009512.1 4872768 4873532 D hypothetical protein 4872768..4873532 Pseudomonas putida F1 5193572 YP_001269662.1 CDS Pput_4355 NC_009512.1 4873529 4874521 D PFAM: conserved hypothetical protein 374; hypothetical protein 4873529..4874521 Pseudomonas putida F1 5193573 YP_001269663.1 CDS purU NC_009512.1 4874753 4875604 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(4874753..4875604) Pseudomonas putida F1 5194690 YP_001269664.1 CDS Pput_4357 NC_009512.1 4875889 4876266 D hypothetical protein 4875889..4876266 Pseudomonas putida F1 5194691 YP_001269665.1 CDS Pput_4358 NC_009512.1 4876238 4876354 D hypothetical protein 4876238..4876354 Pseudomonas putida F1 5193272 YP_001269666.1 CDS sbcB NC_009512.1 4876339 4877772 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(4876339..4877772) Pseudomonas putida F1 5193273 YP_001269667.1 CDS Pput_4360 NC_009512.1 4877830 4878189 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(4877830..4878189) Pseudomonas putida F1 5191506 YP_001269668.1 CDS Pput_4361 NC_009512.1 4878313 4878699 R hypothetical protein complement(4878313..4878699) Pseudomonas putida F1 5191507 YP_001269669.1 CDS Pput_4362 NC_009512.1 4878880 4880334 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4878880..4880334 Pseudomonas putida F1 5193891 YP_001269670.1 CDS groEL NC_009512.1 4880461 4882101 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(4880461..4882101) Pseudomonas putida F1 5193892 YP_001269671.1 CDS groES NC_009512.1 4882152 4882445 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(4882152..4882445) Pseudomonas putida F1 5195406 YP_001269672.1 CDS fxsA NC_009512.1 4882689 4883150 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein complement(4882689..4883150) Pseudomonas putida F1 5195407 YP_001269673.1 CDS Pput_4366 NC_009512.1 4883216 4883947 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(4883216..4883947) Pseudomonas putida F1 5191262 YP_001269674.1 CDS Pput_4367 NC_009512.1 4884030 4885040 R hypothetical protein complement(4884030..4885040) Pseudomonas putida F1 5191263 YP_001269675.1 CDS Pput_4368 NC_009512.1 4885205 4885558 D PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA--protein-cysteine methyltransferase 4885205..4885558 Pseudomonas putida F1 5193703 YP_001269676.1 CDS Pput_4369 NC_009512.1 4885602 4887149 D TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; AmpG-related permease 4885602..4887149 Pseudomonas putida F1 5193704 YP_001269677.1 CDS Pput_4370 NC_009512.1 4887310 4888551 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4887310..4888551) Pseudomonas putida F1 5193789 YP_001269678.1 CDS Pput_4371 NC_009512.1 4888762 4889604 R PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(4888762..4889604) Pseudomonas putida F1 5193790 YP_001269679.1 CDS Pput_4372 NC_009512.1 4889721 4890206 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(4889721..4890206) Pseudomonas putida F1 5193069 YP_001269680.1 CDS Pput_4373 NC_009512.1 4890307 4891224 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 4890307..4891224 Pseudomonas putida F1 5193070 YP_001269681.1 CDS Pput_4374 NC_009512.1 4891262 4893292 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4891262..4893292 Pseudomonas putida F1 5194708 YP_001269682.1 CDS Pput_4375 NC_009512.1 4893294 4893860 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 4893294..4893860 Pseudomonas putida F1 5194709 YP_001269683.1 CDS Pput_4376 NC_009512.1 4893999 4894943 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; hypothetical protein complement(4893999..4894943) Pseudomonas putida F1 5193400 YP_001269684.1 CDS Pput_4377 NC_009512.1 4894940 4895572 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(4894940..4895572) Pseudomonas putida F1 5193401 YP_001269685.1 CDS argJ NC_009512.1 4895728 4896945 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(4895728..4896945) Pseudomonas putida F1 5190564 YP_001269686.1 CDS secA NC_009512.1 4897128 4899947 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(4897128..4899947) Pseudomonas putida F1 5190565 YP_001269687.1 CDS Pput_4380 NC_009512.1 4900062 4900691 D hypothetical protein 4900062..4900691 Pseudomonas putida F1 5194602 YP_001269688.1 CDS lpxC NC_009512.1 4900739 4901650 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4900739..4901650) Pseudomonas putida F1 5194603 YP_001269689.1 CDS Pput_4382 NC_009512.1 4901763 4902959 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4901763..4902959) Pseudomonas putida F1 5191146 YP_001269690.1 CDS Pput_4383 NC_009512.1 4903015 4904277 R PFAM: cell division protein FtsA; cell division protein FtsA complement(4903015..4904277) Pseudomonas putida F1 5191147 YP_001269691.1 CDS Pput_4384 NC_009512.1 4904292 4905161 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein complement(4904292..4905161) Pseudomonas putida F1 5195009 YP_001269692.1 CDS ddl NC_009512.1 4905167 4906123 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(4905167..4906123) Pseudomonas putida F1 5195010 YP_001269693.1 CDS murC NC_009512.1 4906120 4907568 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4906120..4907568) Pseudomonas putida F1 5195139 YP_001269694.1 CDS murG NC_009512.1 4907561 4908640 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4907561..4908640) Pseudomonas putida F1 5195140 YP_001269695.1 CDS Pput_4388 NC_009512.1 4908630 4909844 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW complement(4908630..4909844) Pseudomonas putida F1 5194714 YP_001269696.1 CDS murD NC_009512.1 4909841 4911193 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4909841..4911193) Pseudomonas putida F1 5194715 YP_001269697.1 CDS mraY NC_009512.1 4911194 4912276 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4911194..4912276) Pseudomonas putida F1 5194730 YP_001269698.1 CDS Pput_4391 NC_009512.1 4912276 4913643 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(4912276..4913643) Pseudomonas putida F1 5194731 YP_001269699.1 CDS murE NC_009512.1 4913636 4915126 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(4913636..4915126) Pseudomonas putida F1 5191739 YP_001269700.1 CDS Pput_4393 NC_009512.1 4915123 4916871 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase complement(4915123..4916871) Pseudomonas putida F1 5191740 YP_001269701.1 CDS Pput_4394 NC_009512.1 4916868 4917161 R PFAM: cell division protein FtsL; cell division protein FtsL complement(4916868..4917161) Pseudomonas putida F1 5191041 YP_001269702.1 CDS mraW NC_009512.1 4917158 4918105 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW complement(4917158..4918105) Pseudomonas putida F1 5191042 YP_001269703.1 CDS Pput_4396 NC_009512.1 4918102 4918557 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4918102..4918557) Pseudomonas putida F1 5190633 YP_001269704.1 CDS Pput_4398 NC_009512.1 4919309 4920184 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(4919309..4920184) Pseudomonas putida F1 5195002 YP_001269705.1 CDS Pput_4399 NC_009512.1 4920371 4922188 D PFAM: LppC family lipoprotein; LppC family lipoprotein 4920371..4922188 Pseudomonas putida F1 5194848 YP_001269706.1 CDS Pput_4400 NC_009512.1 4922188 4922559 D PFAM: protein of unknown function UPF0102; hypothetical protein 4922188..4922559 Pseudomonas putida F1 5194849 YP_001269707.1 CDS gmhA NC_009512.1 4922646 4923239 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4922646..4923239 Pseudomonas putida F1 5193831 YP_001269708.1 CDS Pput_4402 NC_009512.1 4923236 4923814 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 4923236..4923814 Pseudomonas putida F1 5193832 YP_001269709.1 CDS Pput_4403 NC_009512.1 4923874 4924305 R PFAM: Stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(4923874..4924305) Pseudomonas putida F1 5193673 YP_001269710.1 CDS Pput_4404 NC_009512.1 4924316 4924939 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(4924316..4924939) Pseudomonas putida F1 5193674 YP_001269711.1 CDS Pput_4405 NC_009512.1 4925056 4925835 R ubiquinol--cytochrome c reductase, cytochrome c1 complement(4925056..4925835) Pseudomonas putida F1 5190892 YP_001269712.1 CDS Pput_4406 NC_009512.1 4925835 4927049 R PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; cytochrome b/b6 domain-containing protein complement(4925835..4927049) Pseudomonas putida F1 5190893 YP_001269713.1 CDS Pput_4407 NC_009512.1 4927046 4927639 R TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4927046..4927639) Pseudomonas putida F1 5193012 YP_001269714.1 CDS rpsI NC_009512.1 4927902 4928294 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4927902..4928294) Pseudomonas putida F1 5193013 YP_001269715.1 CDS rplM NC_009512.1 4928309 4928737 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4928309..4928737) Pseudomonas putida F1 5191668 YP_001269716.1 CDS Pput_4410 NC_009512.1 4928996 4930036 D PFAM: aldo/keto reductase; aldo/keto reductase 4928996..4930036 Pseudomonas putida F1 5191669 YP_001269717.1 CDS Pput_4411 NC_009512.1 4930143 4931147 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4930143..4931147 Pseudomonas putida F1 5194666 YP_001269718.1 CDS Pput_4412 NC_009512.1 4931254 4932348 R PFAM: AFG1-family ATPase; AFG1 family ATPase complement(4931254..4932348) Pseudomonas putida F1 5194667 YP_001269719.1 CDS Pput_4413 NC_009512.1 4932561 4933910 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(4932561..4933910) Pseudomonas putida F1 5192229 YP_001269720.1 CDS Pput_4414 NC_009512.1 4933935 4934570 R alpha/beta fold family hydrolase-like protein complement(4933935..4934570) Pseudomonas putida F1 5192230 YP_001269721.1 CDS Pput_4415 NC_009512.1 4934706 4935143 D PFAM: protein of unknown function DUF1043; hypothetical protein 4934706..4935143 Pseudomonas putida F1 5190724 YP_001269722.1 CDS Pput_4416 NC_009512.1 4935307 4936503 R catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase complement(4935307..4936503) Pseudomonas putida F1 5190725 YP_001269723.1 CDS Pput_4417 NC_009512.1 4936631 4937110 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 4936631..4937110 Pseudomonas putida F1 5190580 YP_001269724.1 CDS Pput_4420 NC_009512.1 4939435 4939698 D PFAM: Colicin immunity protein/pyocin immunity protein; colicin immunity protein/pyocin immunity protein 4939435..4939698 Pseudomonas putida F1 5191539 YP_001269725.1 CDS Pput_4421 NC_009512.1 4939793 4941694 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(4939793..4941694) Pseudomonas putida F1 5191540 YP_001269726.1 CDS Pput_4422 NC_009512.1 4941711 4942628 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(4941711..4942628) Pseudomonas putida F1 5190477 YP_001269727.1 CDS Pput_4423 NC_009512.1 4942852 4943610 R PFAM: protein of unknown function DUF34; hypothetical protein complement(4942852..4943610) Pseudomonas putida F1 5190478 YP_001269728.1 CDS Pput_4424 NC_009512.1 4943779 4944939 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; 2-alkenal reductase 4943779..4944939 Pseudomonas putida F1 5190273 YP_001269729.1 CDS Pput_4425 NC_009512.1 4945111 4945875 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(4945111..4945875) Pseudomonas putida F1 5190274 YP_001269730.1 CDS Pput_4426 NC_009512.1 4945886 4946983 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(4945886..4946983) Pseudomonas putida F1 5190546 YP_001269731.1 CDS Pput_4427 NC_009512.1 4946994 4948172 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(4946994..4948172) Pseudomonas putida F1 5190547 YP_001269732.1 CDS Pput_4428 NC_009512.1 4948240 4949268 R PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(4948240..4949268) Pseudomonas putida F1 5191119 YP_001269733.1 CDS Pput_4429 NC_009512.1 4949601 4950257 D PFAM: phospholipase/Carboxylesterase; carboxylesterase 4949601..4950257 Pseudomonas putida F1 5191120 YP_001269734.1 CDS Pput_4430 NC_009512.1 4950358 4951800 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4950358..4951800 Pseudomonas putida F1 5192033 YP_001269735.1 CDS Pput_4431 NC_009512.1 4952373 4952819 R PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis protein MoaE complement(4952373..4952819) Pseudomonas putida F1 5192034 YP_001269736.1 CDS Pput_4432 NC_009512.1 4952822 4953067 R TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 complement(4952822..4953067) Pseudomonas putida F1 5190373 YP_001269737.1 CDS moaC NC_009512.1 4953067 4953654 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(4953067..4953654) Pseudomonas putida F1 5190374 YP_001269738.1 CDS Pput_4434 NC_009512.1 4953733 4955127 R PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; PhoH family protein complement(4953733..4955127) Pseudomonas putida F1 5190822 YP_001269739.1 CDS Pput_4435 NC_009512.1 4955409 4956536 R PFAM: polysaccharide deacetylase; polysaccharide deacetylase complement(4955409..4956536) Pseudomonas putida F1 5190823 YP_001269740.1 CDS Pput_4436 NC_009512.1 4956674 4957453 D PFAM: protein of unknown function DUF328; hypothetical protein 4956674..4957453 Pseudomonas putida F1 5193576 YP_001269741.1 CDS Pput_4437 NC_009512.1 4958291 4959607 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; GDP-mannose 6-dehydrogenase 4958291..4959607 Pseudomonas putida F1 5193577 YP_001269742.1 CDS Pput_4438 NC_009512.1 4959685 4961175 D hypothetical protein 4959685..4961175 Pseudomonas putida F1 5191895 YP_001269743.1 CDS Pput_4439 NC_009512.1 4961213 4962379 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 4961213..4962379 Pseudomonas putida F1 5191896 YP_001269744.1 CDS Pput_4440 NC_009512.1 4962390 4963823 D PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4962390..4963823 Pseudomonas putida F1 5195147 YP_001269745.1 CDS Pput_4441 NC_009512.1 4963820 4965298 D outer membrane protein AlgE 4963820..4965298 Pseudomonas putida F1 5195148 YP_001269746.1 CDS Pput_4442 NC_009512.1 4965321 4966880 D SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; carbohydrate-binding and sugar hydrolysis protein 4965321..4966880 Pseudomonas putida F1 5192611 YP_001269747.1 CDS Pput_4443 NC_009512.1 4966894 4968333 D alginate biosynthesis protein AlgX 4966894..4968333 Pseudomonas putida F1 5192612 YP_001269748.1 CDS algL NC_009512.1 4968342 4969445 D Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 4968342..4969445 Pseudomonas putida F1 5191334 YP_001269749.1 CDS Pput_4445 NC_009512.1 4969644 4971101 D PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 4969644..4971101 Pseudomonas putida F1 5191335 YP_001269750.1 CDS Pput_4446 NC_009512.1 4971113 4972270 D hypothetical protein 4971113..4972270 Pseudomonas putida F1 5192518 YP_001269751.1 CDS Pput_4447 NC_009512.1 4972291 4972938 D hypothetical protein 4972291..4972938 Pseudomonas putida F1 5192519 YP_001269752.1 CDS Pput_4448 NC_009512.1 4972971 4974428 D TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 4972971..4974428 Pseudomonas putida F1 5192507 YP_001269753.1 CDS Pput_4449 NC_009512.1 4974468 4974920 R hypothetical protein complement(4974468..4974920) Pseudomonas putida F1 5192508 YP_001269754.1 CDS Pput_4450 NC_009512.1 4975090 4975554 D hypothetical protein 4975090..4975554 Pseudomonas putida F1 5192325 YP_001269755.1 CDS Pput_4451 NC_009512.1 4975676 4976488 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 4975676..4976488 Pseudomonas putida F1 5192326 YP_001269756.1 CDS Pput_4452 NC_009512.1 4976737 4978191 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(4976737..4978191) Pseudomonas putida F1 5191294 YP_001269757.1 CDS Pput_4453 NC_009512.1 4978188 4979291 R PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein complement(4978188..4979291) Pseudomonas putida F1 5191295 YP_001269758.1 CDS Pput_4454 NC_009512.1 4979278 4980819 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(4979278..4980819) Pseudomonas putida F1 5192516 YP_001269759.1 CDS Pput_4455 NC_009512.1 4980955 4981860 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(4980955..4981860) Pseudomonas putida F1 5192517 YP_001269760.1 CDS Pput_4456 NC_009512.1 4981984 4982529 D PFAM: UspA domain protein; UspA domain-containing protein 4981984..4982529 Pseudomonas putida F1 5192447 YP_001269761.1 CDS Pput_4457 NC_009512.1 4982601 4983461 R PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein complement(4982601..4983461) Pseudomonas putida F1 5192448 YP_001269762.1 CDS Pput_4458 NC_009512.1 4983472 4983672 R PFAM: protein of unknown function DUF1656; hypothetical protein complement(4983472..4983672) Pseudomonas putida F1 5194736 YP_001269763.1 CDS Pput_4459 NC_009512.1 4983662 4985839 R PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein complement(4983662..4985839) Pseudomonas putida F1 5194737 YP_001269764.1 CDS Pput_4460 NC_009512.1 4985836 4987365 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(4985836..4987365) Pseudomonas putida F1 5190560 YP_001269765.1 CDS Pput_4461 NC_009512.1 4987558 4988505 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4987558..4988505 Pseudomonas putida F1 5190561 YP_001269766.1 CDS Pput_4462 NC_009512.1 4988679 4989653 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 4988679..4989653 Pseudomonas putida F1 5195313 YP_001269767.1 CDS Pput_4463 NC_009512.1 4989771 4990673 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(4989771..4990673) Pseudomonas putida F1 5195314 YP_001269768.1 CDS Pput_4464 NC_009512.1 4990859 4991734 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 4990859..4991734 Pseudomonas putida F1 5191322 YP_001269769.1 CDS Pput_4465 NC_009512.1 4991764 4994154 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(4991764..4994154) Pseudomonas putida F1 5191323 YP_001269770.1 CDS Pput_4466 NC_009512.1 4994331 4995311 R PFAM: FecR protein; anti-FecI sigma factor FecR complement(4994331..4995311) Pseudomonas putida F1 5194570 YP_001269771.1 CDS Pput_4467 NC_009512.1 4995308 4995892 R TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(4995308..4995892) Pseudomonas putida F1 5194571 YP_001269772.1 CDS Pput_4468 NC_009512.1 4995889 4996215 R hypothetical protein complement(4995889..4996215) Pseudomonas putida F1 5190503 YP_001269773.1 CDS Pput_4469 NC_009512.1 4996215 4997792 R PFAM: PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein complement(4996215..4997792) Pseudomonas putida F1 5190504 YP_001269774.1 CDS Pput_4470 NC_009512.1 4997789 4998094 R hypothetical protein complement(4997789..4998094) Pseudomonas putida F1 5193476 YP_001269775.1 CDS Pput_4471 NC_009512.1 4998351 4998698 D hypothetical protein 4998351..4998698 Pseudomonas putida F1 5193477 YP_001269776.1 CDS Pput_4472 NC_009512.1 4998820 4999110 D hypothetical protein 4998820..4999110 Pseudomonas putida F1 5190505 YP_001269777.1 CDS Pput_4473 NC_009512.1 4999114 4999584 R PFAM: phosphate-starvation-inducible E; phosphate-starvation-inducible E complement(4999114..4999584) Pseudomonas putida F1 5190506 YP_001269778.1 CDS Pput_4474 NC_009512.1 5000033 5000275 D hypothetical protein 5000033..5000275 Pseudomonas putida F1 5194524 YP_001269779.1 CDS Pput_4475 NC_009512.1 5000368 5000631 D hypothetical protein 5000368..5000631 Pseudomonas putida F1 5194525 YP_001269780.1 CDS Pput_4476 NC_009512.1 5000987 5001250 D PFAM: YebG family protein; hypothetical protein 5000987..5001250 Pseudomonas putida F1 5193410 YP_001269781.1 CDS Pput_4477 NC_009512.1 5001309 5002328 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase complement(5001309..5002328) Pseudomonas putida F1 5193411 YP_001269782.1 CDS Pput_4478 NC_009512.1 5002453 5003259 D hypothetical protein 5002453..5003259 Pseudomonas putida F1 5190497 YP_001269783.1 CDS Pput_4479 NC_009512.1 5003253 5003885 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; maleylacetoacetate isomerase complement(5003253..5003885) Pseudomonas putida F1 5190498 YP_001269784.1 CDS Pput_4480 NC_009512.1 5003898 5005190 R TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(5003898..5005190) Pseudomonas putida F1 5192388 YP_001269785.1 CDS Pput_4481 NC_009512.1 5005194 5006495 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(5005194..5006495) Pseudomonas putida F1 5192389 YP_001269786.1 CDS Pput_4482 NC_009512.1 5006607 5007440 D PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; IclR family transcriptional regulator 5006607..5007440 Pseudomonas putida F1 5195360 YP_001269787.1 CDS Pput_4483 NC_009512.1 5007371 5010595 R hypothetical protein complement(5007371..5010595) Pseudomonas putida F1 5195361 YP_001269788.1 CDS Pput_4484 NC_009512.1 5010988 5011893 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(5010988..5011893) Pseudomonas putida F1 5191332 YP_001269789.1 CDS Pput_4485 NC_009512.1 5012070 5012741 R PFAM: LrgB family protein; LrgB family protein complement(5012070..5012741) Pseudomonas putida F1 5191333 YP_001269790.1 CDS Pput_4486 NC_009512.1 5012746 5013132 R PFAM: LrgA family protein; LrgA family protein complement(5012746..5013132) Pseudomonas putida F1 5192467 YP_001269791.1 CDS Pput_4487 NC_009512.1 5013230 5014111 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5013230..5014111 Pseudomonas putida F1 5192468 YP_001269792.1 CDS Pput_4488 NC_009512.1 5014133 5014588 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5014133..5014588) Pseudomonas putida F1 5193412 YP_001269793.1 CDS Pput_4489 NC_009512.1 5014704 5015132 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 5014704..5015132 Pseudomonas putida F1 5193413 YP_001269794.1 CDS Pput_4490 NC_009512.1 5015192 5015809 D hypothetical protein 5015192..5015809 Pseudomonas putida F1 5190487 YP_001269795.1 CDS Pput_4491 NC_009512.1 5015794 5016729 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(5015794..5016729) Pseudomonas putida F1 5190488 YP_001269796.1 CDS Pput_4492 NC_009512.1 5016950 5017510 D hypothetical protein 5016950..5017510 Pseudomonas putida F1 5190939 YP_001269797.1 CDS Pput_4493 NC_009512.1 5017544 5018281 D PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 5017544..5018281 Pseudomonas putida F1 5190940 YP_001269798.1 CDS Pput_4494 NC_009512.1 5018291 5018584 D PFAM: protein of unknown function DUF1244; hypothetical protein 5018291..5018584 Pseudomonas putida F1 5193631 YP_001269799.1 CDS Pput_4495 NC_009512.1 5018581 5018922 D PFAM: HopJ type III effector protein; HopJ type III effector protein 5018581..5018922 Pseudomonas putida F1 5193632 YP_001269800.1 CDS Pput_4496 NC_009512.1 5018967 5019875 R alpha/beta hydrolase-like protein complement(5018967..5019875) Pseudomonas putida F1 5191408 YP_001269801.1 CDS Pput_4497 NC_009512.1 5020019 5021230 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(5020019..5021230) Pseudomonas putida F1 5191409 YP_001269802.1 CDS Pput_4498 NC_009512.1 5021532 5022710 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5021532..5022710 Pseudomonas putida F1 5191582 YP_001269803.1 CDS Pput_4499 NC_009512.1 5022849 5023673 R PFAM: Cobalamin-independent synthase MetE, N-terminal domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(5022849..5023673) Pseudomonas putida F1 5191583 YP_001269804.1 CDS Pput_4500 NC_009512.1 5023903 5025390 D PFAM: methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 5023903..5025390 Pseudomonas putida F1 5193586 YP_001269805.1 CDS Pput_4501 NC_009512.1 5025350 5026327 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K complement(5025350..5026327) Pseudomonas putida F1 5193587 YP_001269806.1 CDS Pput_4502 NC_009512.1 5026405 5026602 R PFAM: protein of unknown function DUF466; hypothetical protein complement(5026405..5026602) Pseudomonas putida F1 5194358 YP_001269807.1 CDS Pput_4503 NC_009512.1 5026620 5028686 R PFAM: carbon starvation protein CstA; carbon starvation protein CstA complement(5026620..5028686) Pseudomonas putida F1 5194359 YP_001269808.1 CDS Pput_4504 NC_009512.1 5028863 5029225 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 5028863..5029225 Pseudomonas putida F1 5192194 YP_001269809.1 CDS Pput_4505 NC_009512.1 5029489 5031006 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 5029489..5031006 Pseudomonas putida F1 5192195 YP_001269810.1 CDS Pput_4506 NC_009512.1 5031042 5032412 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(5031042..5032412) Pseudomonas putida F1 5190698 YP_001269811.1 CDS mscL NC_009512.1 5032589 5033008 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5032589..5033008 Pseudomonas putida F1 5190699 YP_001269812.1 CDS Pput_4508 NC_009512.1 5033285 5034139 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase, NAD binding; oxidoreductase FAD/NAD(P)-binding subunit complement(5033285..5034139) Pseudomonas putida F1 5195307 YP_001269813.1 CDS Pput_4509 NC_009512.1 5034277 5034984 D PFAM: regulatory protein, LuxR; Autoinducer-binding domain protein; autoinducer-binding domain-containing protein 5034277..5034984 Pseudomonas putida F1 5195308 YP_001269814.1 CDS Pput_4510 NC_009512.1 5035081 5036205 D PFAM: methyltransferase small; rRNA (guanine-N(2)-)-methyltransferase 5035081..5036205 Pseudomonas putida F1 5193004 YP_001269815.1 CDS Pput_4511 NC_009512.1 5036311 5036466 R hypothetical protein complement(5036311..5036466) Pseudomonas putida F1 5193005 YP_001269816.1 CDS Pput_4512 NC_009512.1 5036476 5037483 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(5036476..5037483) Pseudomonas putida F1 5190784 YP_001269817.1 CDS Pput_4513 NC_009512.1 5037487 5038923 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(5037487..5038923) Pseudomonas putida F1 5190785 YP_001269818.1 CDS Pput_4514 NC_009512.1 5039268 5040488 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5039268..5040488 Pseudomonas putida F1 5192998 YP_001269819.1 CDS Pput_4515 NC_009512.1 5040688 5042013 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 5040688..5042013 Pseudomonas putida F1 5192999 YP_001269820.1 CDS Pput_4516 NC_009512.1 5042010 5043095 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5042010..5043095 Pseudomonas putida F1 5190685 YP_001269821.1 CDS Pput_4517 NC_009512.1 5043283 5043888 R TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha complement(5043283..5043888) Pseudomonas putida F1 5190686 YP_001269822.1 CDS Pput_4518 NC_009512.1 5043899 5044618 R TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta complement(5043899..5044618) Pseudomonas putida F1 5194556 YP_001269823.1 CDS Pput_4519 NC_009512.1 5044818 5045708 D PFAM: protein of unknown function, zinc metallopeptidase putative; hypothetical protein 5044818..5045708 Pseudomonas putida F1 5194557 YP_001269824.1 CDS Pput_4520 NC_009512.1 5045880 5047799 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5045880..5047799 Pseudomonas putida F1 5190242 YP_001269825.1 CDS Pput_4521 NC_009512.1 5047921 5049588 R TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(5047921..5049588) Pseudomonas putida F1 5190243 YP_001269826.1 CDS Pput_4522 NC_009512.1 5049706 5050602 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5049706..5050602) Pseudomonas putida F1 5190846 YP_001269827.1 CDS Pput_4523 NC_009512.1 5050786 5051376 R PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(5050786..5051376) Pseudomonas putida F1 5190847 YP_001269828.1 CDS Pput_4524 NC_009512.1 5051540 5051854 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 5051540..5051854 Pseudomonas putida F1 5193280 YP_001269829.1 CDS Pput_4525 NC_009512.1 5051844 5052608 R PFAM: protein of unknown function DUF81; hypothetical protein complement(5051844..5052608) Pseudomonas putida F1 5193281 YP_001269830.1 CDS Pput_4526 NC_009512.1 5052686 5053567 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5052686..5053567 Pseudomonas putida F1 5195445 YP_001269831.1 CDS Pput_4527 NC_009512.1 5053674 5053949 R PFAM: protein of unknown function DUF156; hypothetical protein complement(5053674..5053949) Pseudomonas putida F1 5195446 YP_001269832.1 CDS Pput_4528 NC_009512.1 5054020 5054958 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 5054020..5054958 Pseudomonas putida F1 5191720 YP_001269833.1 CDS Pput_4529 NC_009512.1 5055055 5055399 D PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 5055055..5055399 Pseudomonas putida F1 5191721 YP_001269834.1 CDS Pput_4530 NC_009512.1 5055592 5056479 R TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 3-hydroxyisobutyrate dehydrogenase complement(5055592..5056479) Pseudomonas putida F1 5192756 YP_001269835.1 CDS Pput_4531 NC_009512.1 5056490 5058016 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(5056490..5058016) Pseudomonas putida F1 5192757 YP_001269836.1 CDS Pput_4532 NC_009512.1 5058149 5059099 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5058149..5059099 Pseudomonas putida F1 5193600 YP_001269837.1 CDS Pput_4533 NC_009512.1 5059234 5059722 R PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(5059234..5059722) Pseudomonas putida F1 5193601 YP_001269838.1 CDS Pput_4534 NC_009512.1 5059730 5061001 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; diguanylate cyclase complement(5059730..5061001) Pseudomonas putida F1 5191504 YP_001269839.1 CDS Pput_4535 NC_009512.1 5060998 5061564 R hypothetical protein complement(5060998..5061564) Pseudomonas putida F1 5191505 YP_001269840.1 CDS Pput_4536 NC_009512.1 5061665 5063740 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(5061665..5063740) Pseudomonas putida F1 5194496 YP_001269841.1 CDS Pput_4537 NC_009512.1 5063737 5067411 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; exodeoxyribonuclease V subunit beta complement(5063737..5067411) Pseudomonas putida F1 5194497 YP_001269842.1 CDS Pput_4538 NC_009512.1 5067408 5070890 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma complement(5067408..5070890) Pseudomonas putida F1 5193760 YP_001269843.1 CDS Pput_4539 NC_009512.1 5077136 5077747 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(5077136..5077747) Pseudomonas putida F1 5191370 YP_001269844.1 CDS Pput_4540 NC_009512.1 5077747 5078760 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(5077747..5078760) Pseudomonas putida F1 5195237 YP_001269845.1 CDS Pput_4541 NC_009512.1 5078840 5079691 R TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(5078840..5079691) Pseudomonas putida F1 5195238 YP_001269846.1 CDS Pput_4542 NC_009512.1 5079842 5080858 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(5079842..5080858) Pseudomonas putida F1 5194718 YP_001269847.1 CDS ilvH NC_009512.1 5080915 5081406 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(5080915..5081406) Pseudomonas putida F1 5194719 YP_001269848.1 CDS Pput_4544 NC_009512.1 5081408 5083132 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit complement(5081408..5083132) Pseudomonas putida F1 5194522 YP_001269849.1 CDS Pput_4545 NC_009512.1 5083541 5083873 R PFAM: protein of unknown function DUF446; hypothetical protein complement(5083541..5083873) Pseudomonas putida F1 5194523 YP_001269850.1 CDS Pput_4546 NC_009512.1 5083873 5084673 R hypothetical protein complement(5083873..5084673) Pseudomonas putida F1 5193368 YP_001269851.1 CDS Pput_4547 NC_009512.1 5084689 5087010 R TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B complement(5084689..5087010) Pseudomonas putida F1 5193369 YP_001269852.1 CDS Pput_4548 NC_009512.1 5087087 5088688 D hypothetical protein 5087087..5088688 Pseudomonas putida F1 5190711 YP_001269853.1 CDS Pput_4549 NC_009512.1 5088846 5089124 D PFAM: TfoX, C-terminal domain protein; TfoX domain-containing protein 5088846..5089124 Pseudomonas putida F1 5190712 YP_001269854.1 CDS Pput_4550 NC_009512.1 5089305 5090189 R PFAM: protein of unknown function DUF399; hypothetical protein complement(5089305..5090189) Pseudomonas putida F1 5192008 YP_001269855.1 CDS hmuV NC_009512.1 5090294 5091061 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(5090294..5091061) Pseudomonas putida F1 5192009 YP_001269856.1 CDS Pput_4552 NC_009512.1 5091061 5092098 R PFAM: transport system permease protein; ABC-3 protein; transport system permease complement(5091061..5092098) Pseudomonas putida F1 5193249 YP_001269857.1 CDS Pput_4553 NC_009512.1 5092095 5092979 R PFAM: periplasmic binding protein; periplasmic binding protein complement(5092095..5092979) Pseudomonas putida F1 5193250 YP_001269858.1 CDS Pput_4554 NC_009512.1 5093128 5093445 D PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 5093128..5093445 Pseudomonas putida F1 5192646 YP_001269859.1 CDS Pput_4555 NC_009512.1 5093435 5094148 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(5093435..5094148) Pseudomonas putida F1 5192647 YP_001269860.1 CDS Pput_4556 NC_009512.1 5094148 5095320 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; hypothetical protein complement(5094148..5095320) Pseudomonas putida F1 5193311 YP_001269861.1 CDS Pput_4557 NC_009512.1 5095531 5095977 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 5095531..5095977 Pseudomonas putida F1 5193312 YP_001269862.1 CDS Pput_4558 NC_009512.1 5096026 5096928 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5096026..5096928 Pseudomonas putida F1 5192788 YP_001269863.1 CDS Pput_4559 NC_009512.1 5097173 5097349 D hypothetical protein 5097173..5097349 Pseudomonas putida F1 5192789 YP_001269864.1 CDS Pput_4560 NC_009512.1 5097333 5100308 D TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; multi-sensor signal transduction histidine kinase 5097333..5100308 Pseudomonas putida F1 5192066 YP_001269865.1 CDS Pput_4561 NC_009512.1 5100313 5101755 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family two component sigma-54 specific transcriptional regulator 5100313..5101755 Pseudomonas putida F1 5192067 YP_001269866.1 CDS Pput_4562 NC_009512.1 5102724 5104106 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 5102724..5104106 Pseudomonas putida F1 5190790 YP_001269867.1 CDS Pput_4563 NC_009512.1 5104103 5104582 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5104103..5104582 Pseudomonas putida F1 5190791 YP_001269868.1 CDS panB NC_009512.1 5104845 5105645 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5104845..5105645 Pseudomonas putida F1 5192192 YP_001269869.1 CDS panC NC_009512.1 5105642 5106505 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5105642..5106505 Pseudomonas putida F1 5192193 YP_001269870.1 CDS pgi NC_009512.1 5106714 5108378 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5106714..5108378 Pseudomonas putida F1 5194702 YP_001269871.1 CDS Pput_4567 NC_009512.1 5108559 5110493 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5108559..5110493 Pseudomonas putida F1 5194703 YP_001269872.1 CDS Pput_4568 NC_009512.1 5110535 5111404 D hypothetical protein 5110535..5111404 Pseudomonas putida F1 5194966 YP_001269873.1 CDS Pput_4569 NC_009512.1 5111483 5114419 D PFAM: protein of unknown function DUF748; hypothetical protein 5111483..5114419 Pseudomonas putida F1 5194967 YP_001269874.1 CDS Pput_4570 NC_009512.1 5114522 5114935 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(5114522..5114935) Pseudomonas putida F1 5191074 YP_001269875.1 CDS Pput_4571 NC_009512.1 5114996 5115298 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 5114996..5115298 Pseudomonas putida F1 5191075 YP_001269876.1 CDS Pput_4572 NC_009512.1 5115375 5115725 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein complement(5115375..5115725) Pseudomonas putida F1 5192911 YP_001269877.1 CDS Pput_4573 NC_009512.1 5115987 5118092 R PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(5115987..5118092) Pseudomonas putida F1 5192912 YP_001269878.1 CDS rpsO NC_009512.1 5118343 5118612 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(5118343..5118612) Pseudomonas putida F1 5193968 YP_001269879.1 CDS truB NC_009512.1 5118760 5119677 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(5118760..5119677) Pseudomonas putida F1 5193969 YP_001269880.1 CDS rbfA NC_009512.1 5119681 5120079 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(5119681..5120079) Pseudomonas putida F1 5190351 YP_001269881.1 CDS infB NC_009512.1 5120196 5122736 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(5120196..5122736) Pseudomonas putida F1 5190352 YP_001269882.1 CDS nusA NC_009512.1 5122764 5124245 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(5122764..5124245) Pseudomonas putida F1 5190590 YP_001269883.1 CDS Pput_4579 NC_009512.1 5124305 5124814 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(5124305..5124814) Pseudomonas putida F1 5190591 YP_001269884.1 CDS secG NC_009512.1 5125177 5125575 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG complement(5125177..5125575) Pseudomonas putida F1 5193014 YP_001269885.1 CDS tpiA NC_009512.1 5125580 5126335 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(5125580..5126335) Pseudomonas putida F1 5195460 YP_001269886.1 CDS glmM NC_009512.1 5126401 5127741 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(5126401..5127741) Pseudomonas putida F1 5194550 YP_001269887.1 CDS Pput_4583 NC_009512.1 5127758 5128609 R TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(5127758..5128609) Pseudomonas putida F1 5194551 YP_001269888.1 CDS Pput_4584 NC_009512.1 5128618 5130522 R TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(5128618..5130522) Pseudomonas putida F1 5194980 YP_001269889.1 CDS Pput_4585 NC_009512.1 5130729 5131352 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(5130729..5131352) Pseudomonas putida F1 5194981 YP_001269890.1 CDS Pput_4586 NC_009512.1 5131455 5131763 D PFAM: protein of unknown function UPF0044; hypothetical protein 5131455..5131763 Pseudomonas putida F1 5192716 YP_001269891.1 CDS Pput_4587 NC_009512.1 5131776 5132225 R hypothetical protein complement(5131776..5132225) Pseudomonas putida F1 5192717 YP_001269892.1 CDS greA NC_009512.1 5132203 5132685 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(5132203..5132685) Pseudomonas putida F1 5192141 YP_001269893.1 CDS carB NC_009512.1 5132682 5135849 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(5132682..5135849) Pseudomonas putida F1 5192142 YP_001269894.1 CDS Pput_4590 NC_009512.1 5136009 5137169 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(5136009..5137169) Pseudomonas putida F1 5194051 YP_001269895.1 CDS Pput_4591 NC_009512.1 5137472 5138275 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(5137472..5138275) Pseudomonas putida F1 5194052 YP_001269896.1 CDS Pput_4592 NC_009512.1 5138289 5139413 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(5138289..5139413) Pseudomonas putida F1 5193801 YP_001269897.1 CDS dnaK NC_009512.1 5139701 5141536 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(5139701..5141536) Pseudomonas putida F1 5193802 YP_001269898.1 CDS Pput_4594 NC_009512.1 5141638 5142195 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(5141638..5142195) Pseudomonas putida F1 5190804 YP_001269899.1 CDS Pput_4595 NC_009512.1 5142388 5144061 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 5142388..5144061 Pseudomonas putida F1 5190805 YP_001269900.1 CDS Pput_4596 NC_009512.1 5144251 5144655 R PFAM: ferric-uptake regulator; ferric uptake regulator family protein complement(5144251..5144655) Pseudomonas putida F1 5194291 YP_001269901.1 CDS Pput_4597 NC_009512.1 5144753 5145289 D PFAM: SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 5144753..5145289 Pseudomonas putida F1 5194292 YP_001269902.1 CDS Pput_4598 NC_009512.1 5145353 5145787 R PFAM: cyclase/dehydrase; cyclase/dehydrase complement(5145353..5145787) Pseudomonas putida F1 5191391 YP_001269903.1 CDS smpB NC_009512.1 5145951 5146433 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5145951..5146433 Pseudomonas putida F1 5191392 YP_001269904.1 CDS Pput_4600 NC_009512.1 5146638 5147405 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(5146638..5147405) Pseudomonas putida F1 5190383 YP_001269905.1 CDS Pput_4601 NC_009512.1 5147662 5149332 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 5147662..5149332 Pseudomonas putida F1 5190384 YP_001269906.1 CDS lldD NC_009512.1 5149395 5150540 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5149395..5150540 Pseudomonas putida F1 5192844 YP_001269907.1 CDS Pput_4603 NC_009512.1 5150616 5153426 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; D-lactate dehydrogenase 5150616..5153426 Pseudomonas putida F1 5192845 YP_001269908.1 CDS Pput_4604 NC_009512.1 5153901 5154191 D hypothetical protein 5153901..5154191 Pseudomonas putida F1 5190443 YP_001269909.1 CDS Pput_4605 NC_009512.1 5154871 5156127 D PFAM: phage integrase family protein; phage integrase family protein 5154871..5156127 Pseudomonas putida F1 5192587 YP_001269910.1 CDS Pput_4606 NC_009512.1 5157092 5158489 D hypothetical protein 5157092..5158489 Pseudomonas putida F1 5190613 YP_001269911.1 CDS Pput_4607 NC_009512.1 5158473 5158832 D hypothetical protein 5158473..5158832 Pseudomonas putida F1 5190614 YP_001269912.1 CDS Pput_4608 NC_009512.1 5158810 5159790 D PFAM: phage integrase family protein; phage integrase family protein 5158810..5159790 Pseudomonas putida F1 5193534 YP_001269913.1 CDS Pput_4609 NC_009512.1 5159787 5160062 D hypothetical protein 5159787..5160062 Pseudomonas putida F1 5193535 YP_001269914.1 CDS Pput_4610 NC_009512.1 5160468 5162438 R PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; hypothetical protein complement(5160468..5162438) Pseudomonas putida F1 5192271 YP_001269915.1 CDS Pput_4611 NC_009512.1 5162468 5164153 R PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit complement(5162468..5164153) Pseudomonas putida F1 5192272 YP_001269916.1 CDS Pput_4612 NC_009512.1 5164150 5165619 R PFAM: N-6 DNA methylase; N-6 DNA methylase complement(5164150..5165619) Pseudomonas putida F1 5195338 YP_001269917.1 CDS Pput_4613 NC_009512.1 5165622 5166455 R hypothetical protein complement(5165622..5166455) Pseudomonas putida F1 5195339 YP_001269918.1 CDS Pput_4614 NC_009512.1 5166459 5168831 R PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; EcoEI R domain-containing protein complement(5166459..5168831) Pseudomonas putida F1 5194277 YP_001269919.1 CDS Pput_4615 NC_009512.1 5169632 5172880 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; non-specific serine/threonine protein kinase complement(5169632..5172880) Pseudomonas putida F1 5194278 YP_001269920.1 CDS Pput_4616 NC_009512.1 5172880 5174505 R hypothetical protein complement(5172880..5174505) Pseudomonas putida F1 5194175 YP_001269921.1 CDS Pput_4617 NC_009512.1 5174502 5175245 R hypothetical protein complement(5174502..5175245) Pseudomonas putida F1 5194176 YP_001269922.1 CDS Pput_4618 NC_009512.1 5175259 5177451 R hypothetical protein complement(5175259..5177451) Pseudomonas putida F1 5193126 YP_001269923.1 CDS Pput_4619 NC_009512.1 5178049 5179359 R McrBC 5-methylcytosine restriction system component-like protein complement(5178049..5179359) Pseudomonas putida F1 5193127 YP_001269924.1 CDS Pput_4620 NC_009512.1 5179356 5181944 R PFAM: ATPase associated with various cellular activities, AAA_5; ATPase complement(5179356..5181944) Pseudomonas putida F1 5194150 YP_001269925.1 CDS Pput_4621 NC_009512.1 5182768 5183448 R hypothetical protein complement(5182768..5183448) Pseudomonas putida F1 5194151 YP_001269926.1 CDS Pput_4622 NC_009512.1 5183752 5184018 R hypothetical protein complement(5183752..5184018) Pseudomonas putida F1 5195545 YP_001269927.1 CDS Pput_4623 NC_009512.1 5184132 5185007 D transcriptional regulator-like protein 5184132..5185007 Pseudomonas putida F1 5195546 YP_001269928.1 CDS Pput_4624 NC_009512.1 5185357 5187750 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor complement(5185357..5187750) Pseudomonas putida F1 5195429 YP_001269929.1 CDS Pput_4625 NC_009512.1 5188239 5188991 R hypothetical protein complement(5188239..5188991) Pseudomonas putida F1 5195430 YP_001269930.1 CDS Pput_4626 NC_009512.1 5189470 5190093 R hypothetical protein complement(5189470..5190093) Pseudomonas putida F1 5195082 YP_001269931.1 CDS Pput_4627 NC_009512.1 5190284 5191675 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(5190284..5191675) Pseudomonas putida F1 5195083 YP_001269932.1 CDS Pput_4628 NC_009512.1 5192093 5193436 R TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter complement(5192093..5193436) Pseudomonas putida F1 5195420 YP_001269933.1 CDS Pput_4629 NC_009512.1 5193531 5194508 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(5193531..5194508) Pseudomonas putida F1 5195421 YP_001269934.1 CDS Pput_4630 NC_009512.1 5194581 5195468 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5194581..5195468 Pseudomonas putida F1 5194646 YP_001269935.1 CDS Pput_4631 NC_009512.1 5195707 5197062 R PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; glucarate dehydratase complement(5195707..5197062) Pseudomonas putida F1 5194647 YP_001269936.1 CDS Pput_4632 NC_009512.1 5197082 5198434 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5197082..5198434) Pseudomonas putida F1 5194004 YP_001269937.1 CDS Pput_4633 NC_009512.1 5198694 5199395 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 5198694..5199395 Pseudomonas putida F1 5194005 YP_001269938.1 CDS Pput_4634 NC_009512.1 5199484 5200494 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(5199484..5200494) Pseudomonas putida F1 5193136 YP_001269939.1 CDS Pput_4635 NC_009512.1 5200659 5201249 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(5200659..5201249) Pseudomonas putida F1 5193137 YP_001269940.1 CDS Pput_4636 NC_009512.1 5201246 5202115 R TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(5201246..5202115) Pseudomonas putida F1 5193750 YP_001269941.1 CDS Pput_4637 NC_009512.1 5202265 5202834 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(5202265..5202834) Pseudomonas putida F1 5193751 YP_001269942.1 CDS Pput_4638 NC_009512.1 5203014 5203700 D PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 5203014..5203700 Pseudomonas putida F1 5194594 YP_001269943.1 CDS Pput_4639 NC_009512.1 5204199 5205152 D PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 5204199..5205152 Pseudomonas putida F1 5194595 YP_001269944.1 CDS Pput_4640 NC_009512.1 5205301 5206539 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 5205301..5206539 Pseudomonas putida F1 5194391 YP_001269945.1 CDS Pput_4641 NC_009512.1 5206692 5208023 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(5206692..5208023) Pseudomonas putida F1 5194392 YP_001269946.1 CDS Pput_4642 NC_009512.1 5208079 5208999 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(5208079..5208999) Pseudomonas putida F1 5193039 YP_001269947.1 CDS Pput_4643 NC_009512.1 5209118 5209753 R TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(5209118..5209753) Pseudomonas putida F1 5193040 YP_001269948.1 CDS Pput_4644 NC_009512.1 5209763 5210242 R PFAM: protein of unknown function DUF88; hypothetical protein complement(5209763..5210242) Pseudomonas putida F1 5193689 YP_001269949.1 CDS Pput_4645 NC_009512.1 5210404 5211162 R putative periplasmic ligand-binding sensor protein complement(5210404..5211162) Pseudomonas putida F1 5193690 YP_001269950.1 CDS Pput_4646 NC_009512.1 5211330 5211986 D PFAM: protein of unknown function UPF0259; hypothetical protein 5211330..5211986 Pseudomonas putida F1 5194947 YP_001269951.1 CDS Pput_4647 NC_009512.1 5212052 5212591 D hypothetical protein 5212052..5212591 Pseudomonas putida F1 5194948 YP_001269952.1 CDS Pput_4648 NC_009512.1 5212661 5215189 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB complement(5212661..5215189) Pseudomonas putida F1 5194860 YP_001269953.1 CDS Pput_4649 NC_009512.1 5215306 5215725 D hypothetical protein 5215306..5215725 Pseudomonas putida F1 5194861 YP_001269954.1 CDS Pput_4650 NC_009512.1 5215748 5216620 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 5215748..5216620 Pseudomonas putida F1 5195503 YP_001269955.1 CDS Pput_4651 NC_009512.1 5216898 5217815 R hypothetical protein complement(5216898..5217815) Pseudomonas putida F1 5195504 YP_001269956.1 CDS Pput_4652 NC_009512.1 5218130 5218606 D PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, MarR; AsnC family transcriptional regulator 5218130..5218606 Pseudomonas putida F1 5194964 YP_001269957.1 CDS Pput_4653 NC_009512.1 5218660 5218863 D hypothetical protein 5218660..5218863 Pseudomonas putida F1 5194965 YP_001269958.1 CDS Pput_4654 NC_009512.1 5218977 5219609 R PFAM: pseudouridine synthase; pseudouridine synthase complement(5218977..5219609) Pseudomonas putida F1 5190850 YP_001269959.1 CDS Pput_4655 NC_009512.1 5219616 5221166 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(5219616..5221166) Pseudomonas putida F1 5190851 YP_001269960.1 CDS Pput_4656 NC_009512.1 5221185 5222837 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein complement(5221185..5222837) Pseudomonas putida F1 5195230 YP_001269961.1 CDS Pput_4657 NC_009512.1 5223049 5225037 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor signal transduction histidine kinase complement(5223049..5225037) Pseudomonas putida F1 5195231 YP_001269962.1 CDS Pput_4658 NC_009512.1 5225303 5226100 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5225303..5226100 Pseudomonas putida F1 5194444 YP_001269963.1 CDS thiE NC_009512.1 5226114 5226737 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5226114..5226737 Pseudomonas putida F1 5194445 YP_001269964.1 CDS Pput_4660 NC_009512.1 5226754 5228037 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5226754..5228037 Pseudomonas putida F1 5190519 YP_001269965.1 CDS Pput_4661 NC_009512.1 5228282 5228827 D PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 5228282..5228827 Pseudomonas putida F1 5190520 YP_001269966.1 CDS Pput_4662 NC_009512.1 5228831 5229157 R PFAM: Domain of unknown function DUF1820; hypothetical protein complement(5228831..5229157) Pseudomonas putida F1 5194137 YP_001269967.1 CDS Pput_4663 NC_009512.1 5229390 5230388 D PFAM: PhoH family protein; PhoH family protein 5229390..5230388 Pseudomonas putida F1 5194138 YP_001269968.1 CDS Pput_4664 NC_009512.1 5230381 5230854 D PFAM: protein of unknown function UPF0054; putative metalloprotease 5230381..5230854 Pseudomonas putida F1 5194453 YP_001269969.1 CDS Pput_4665 NC_009512.1 5230880 5231719 D PFAM: CBS domain containing protein; transporter-associated region; hypothetical protein 5230880..5231719 Pseudomonas putida F1 5194454 YP_001269970.1 CDS lnt NC_009512.1 5231728 5233245 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5231728..5233245 Pseudomonas putida F1 5192235 YP_001269971.1 CDS Pput_4667 NC_009512.1 5233392 5234153 R PFAM: protein of unknown function DUF218; hypothetical protein complement(5233392..5234153) Pseudomonas putida F1 5192236 YP_001269972.1 CDS Pput_4668 NC_009512.1 5234288 5234602 R hypothetical protein complement(5234288..5234602) Pseudomonas putida F1 5191142 YP_001269973.1 CDS leuS NC_009512.1 5234716 5237436 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5234716..5237436 Pseudomonas putida F1 5191143 YP_001269974.1 CDS Pput_4670 NC_009512.1 5237498 5238103 D PFAM: Rare lipoprotein B; rare lipoprotein B 5237498..5238103 Pseudomonas putida F1 5194173 YP_001269975.1 CDS holA NC_009512.1 5238143 5239180 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5238143..5239180 Pseudomonas putida F1 5194174 YP_001269976.1 CDS Pput_4672 NC_009512.1 5239398 5239562 D PFAM: protein of unknown function DUF331; hypothetical protein 5239398..5239562 Pseudomonas putida F1 5194287 YP_001269977.1 CDS Pput_4673 NC_009512.1 5239623 5240939 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; lytic murein transglycosylase 5239623..5240939 Pseudomonas putida F1 5194288 YP_001269978.1 CDS Pput_4674 NC_009512.1 5240973 5241911 R PFAM: peptidase U61, LD-carboxypeptidase A; peptidase U61, LD-carboxypeptidase A complement(5240973..5241911) Pseudomonas putida F1 5195257 YP_001269979.1 CDS Pput_4675 NC_009512.1 5242010 5243026 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(5242010..5243026) Pseudomonas putida F1 5195258 YP_001269980.1 CDS lipB NC_009512.1 5243029 5243676 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(5243029..5243676) Pseudomonas putida F1 5195136 YP_001269981.1 CDS Pput_4677 NC_009512.1 5243676 5243951 R PFAM: protein of unknown function DUF493; hypothetical protein complement(5243676..5243951) Pseudomonas putida F1 5195137 YP_001269982.1 CDS Pput_4678 NC_009512.1 5244025 5245236 R PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase complement(5244025..5245236) Pseudomonas putida F1 5195563 YP_001269983.1 CDS Pput_4679 NC_009512.1 5245406 5246407 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; rare lipoprotein A complement(5245406..5246407) Pseudomonas putida F1 5195564 YP_001269984.1 CDS Pput_4680 NC_009512.1 5246407 5247417 R TIGRFAM: lytic murein transglycosylase B; lytic murein transglycosylase B complement(5246407..5247417) Pseudomonas putida F1 5193868 YP_001269985.1 CDS Pput_4681 NC_009512.1 5247435 5248577 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA complement(5247435..5248577) Pseudomonas putida F1 5193869 YP_001269986.1 CDS Pput_4682 NC_009512.1 5248577 5250466 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase complement(5248577..5250466) Pseudomonas putida F1 5191076 YP_001269987.1 CDS Pput_4683 NC_009512.1 5250483 5250950 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(5250483..5250950) Pseudomonas putida F1 5191077 YP_001269988.1 CDS Pput_4684 NC_009512.1 5250961 5251437 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein complement(5250961..5251437) Pseudomonas putida F1 5192327 YP_001269989.1 CDS nadD NC_009512.1 5251424 5252116 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(5251424..5252116) Pseudomonas putida F1 5192328 YP_001269990.1 CDS proA NC_009512.1 5252085 5253356 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(5252085..5253356) Pseudomonas putida F1 5193564 YP_001269991.1 CDS Pput_4687 NC_009512.1 5253687 5254355 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5253687..5254355 Pseudomonas putida F1 5193565 YP_001269992.1 CDS Pput_4688 NC_009512.1 5254358 5255674 D PFAM: phosphoesterase, PA-phosphatase related; SNARE associated Golgi protein; PA-phosphatase-like protein 5254358..5255674 Pseudomonas putida F1 5193352 YP_001269993.1 CDS Pput_4689 NC_009512.1 5255786 5256376 R PFAM: peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein complement(5255786..5256376) Pseudomonas putida F1 5193353 YP_001269994.1 CDS Pput_4690 NC_009512.1 5256386 5257102 R PFAM: LrgB family protein; LrgB family protein complement(5256386..5257102) Pseudomonas putida F1 5192323 YP_001269995.1 CDS Pput_4691 NC_009512.1 5257099 5257461 R PFAM: LrgA family protein; LrgA family protein complement(5257099..5257461) Pseudomonas putida F1 5192324 YP_001269996.1 CDS Pput_4692 NC_009512.1 5257605 5258060 D PFAM: MaoC domain protein dehydratase; dehydratase 5257605..5258060 Pseudomonas putida F1 5191659 YP_001269997.1 CDS prmA NC_009512.1 5258177 5259055 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5258177..5259055 Pseudomonas putida F1 5191660 YP_001269998.1 CDS Pput_4694 NC_009512.1 5259098 5260453 D TIGRFAM: MJ0042 family finger-like protein; Zinc finger-domain-containing protein 5259098..5260453 Pseudomonas putida F1 5191710 YP_001269999.1 CDS Pput_4695 NC_009512.1 5260661 5261674 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; nifR3 family TIM-barrel protein 5260661..5261674 Pseudomonas putida F1 5191711 YP_001270000.1 CDS fis NC_009512.1 5261671 5261991 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5261671..5261991 Pseudomonas putida F1 5193470 YP_001270001.1 CDS purH NC_009512.1 5262073 5263680 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5262073..5263680 Pseudomonas putida F1 5193471 YP_001270002.1 CDS Pput_4698 NC_009512.1 5263827 5265119 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5263827..5265119 Pseudomonas putida F1 5192558 YP_001270003.1 CDS Pput_4699 NC_009512.1 5265258 5268029 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor hybrid histidine kinase 5265258..5268029 Pseudomonas putida F1 5192559 YP_001270004.1 CDS Pput_4700 NC_009512.1 5268105 5268701 D PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 5268105..5268701 Pseudomonas putida F1 5195113 YP_001270005.1 CDS Pput_4701 NC_009512.1 5268698 5269321 R hypothetical protein complement(5268698..5269321) Pseudomonas putida F1 5195114 YP_001270006.1 CDS Pput_4702 NC_009512.1 5269318 5270007 R hypothetical protein complement(5269318..5270007) Pseudomonas putida F1 5193105 YP_001270007.1 CDS Pput_4703 NC_009512.1 5270067 5270747 R hypothetical protein complement(5270067..5270747) Pseudomonas putida F1 5193106 YP_001270008.1 CDS Pput_4704 NC_009512.1 5270840 5272522 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; precorrin-3B C(17)-methyltransferase complement(5270840..5272522) Pseudomonas putida F1 5191090 YP_001270009.1 CDS Pput_4705 NC_009512.1 5272525 5273256 R catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase complement(5272525..5273256) Pseudomonas putida F1 5191091 YP_001270010.1 CDS cobH NC_009512.1 5273256 5273882 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(5273256..5273882) Pseudomonas putida F1 5194281 YP_001270011.1 CDS Pput_4707 NC_009512.1 5273875 5275191 R TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; precorrin-3B synthase complement(5273875..5275191) Pseudomonas putida F1 5194282 YP_001270012.1 CDS Pput_4708 NC_009512.1 5275450 5276661 D TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5275450..5276661 Pseudomonas putida F1 5193270 YP_001270013.1 CDS cbiD NC_009512.1 5276654 5277748 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5276654..5277748 Pseudomonas putida F1 5193271 YP_001270014.1 CDS Pput_4710 NC_009512.1 5277745 5278464 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5277745..5278464 Pseudomonas putida F1 5192897 YP_001270015.1 CDS Pput_4711 NC_009512.1 5278593 5279030 D PFAM: protein of unknown function DUF107; hypothetical protein 5278593..5279030 Pseudomonas putida F1 5192898 YP_001270016.1 CDS Pput_4712 NC_009512.1 5279057 5279911 D PFAM: band 7 protein; hypothetical protein 5279057..5279911 Pseudomonas putida F1 5192135 YP_001270017.1 CDS Pput_4713 NC_009512.1 5280183 5280572 D hypothetical protein 5280183..5280572 Pseudomonas putida F1 5192136 YP_001270018.1 CDS Pput_4714 NC_009512.1 5280620 5281105 D PFAM: protein of unknown function DUF461; hypothetical protein 5280620..5281105 Pseudomonas putida F1 5193201 YP_001270019.1 CDS Pput_4715 NC_009512.1 5281128 5281559 D hypothetical protein 5281128..5281559 Pseudomonas putida F1 5193202 YP_001270020.1 CDS Pput_4716 NC_009512.1 5281626 5283692 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent copper receptor 5281626..5283692 Pseudomonas putida F1 5193241 YP_001270021.1 CDS Pput_4717 NC_009512.1 5283749 5285116 D PFAM: Propeptide, PepSY amd peptidase M4; PepSY-associated TM helix domain protein; peptidase 5283749..5285116 Pseudomonas putida F1 5193242 YP_001270022.1 CDS Pput_4718 NC_009512.1 5285338 5286744 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5285338..5286744 Pseudomonas putida F1 5195575 YP_001270023.1 CDS Pput_4719 NC_009512.1 5287041 5288306 D branched chain amino acid ABC transporter substrate-binding protein 5287041..5288306 Pseudomonas putida F1 5195576 YP_001270024.1 CDS Pput_4720 NC_009512.1 5288480 5289934 D PFAM: inner-membrane translocator; inner-membrane translocator 5288480..5289934 Pseudomonas putida F1 5193051 YP_001270025.1 CDS Pput_4721 NC_009512.1 5289934 5291013 D PFAM: inner-membrane translocator; inner-membrane translocator 5289934..5291013 Pseudomonas putida F1 5193052 YP_001270026.1 CDS Pput_4722 NC_009512.1 5291010 5291867 D PFAM: ABC transporter related; ABC transporter-like protein 5291010..5291867 Pseudomonas putida F1 5194069 YP_001270027.1 CDS Pput_4723 NC_009512.1 5292022 5292720 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5292022..5292720 Pseudomonas putida F1 5194070 YP_001270028.1 CDS Pput_4724 NC_009512.1 5292752 5293267 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5292752..5293267 Pseudomonas putida F1 5194091 YP_001270029.1 CDS Pput_4725 NC_009512.1 5293615 5293920 R hypothetical protein complement(5293615..5293920) Pseudomonas putida F1 5194092 YP_001270030.1 CDS Pput_4726 NC_009512.1 5293923 5294882 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; chaperone DnaJ domain-containing protein complement(5293923..5294882) Pseudomonas putida F1 5193171 YP_001270031.1 CDS Pput_4727 NC_009512.1 5295047 5296318 D molecular chaperone-like protein 5295047..5296318 Pseudomonas putida F1 5193172 YP_001270032.1 CDS Pput_4728 NC_009512.1 5296674 5297681 R hypothetical protein complement(5296674..5297681) Pseudomonas putida F1 5191242 YP_001270033.1 CDS Pput_4729 NC_009512.1 5297751 5298038 R PFAM: PsiF repeat protein; PsiF repeat-containing protein complement(5297751..5298038) Pseudomonas putida F1 5191243 YP_001270034.1 CDS Pput_4730 NC_009512.1 5298102 5298890 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator complement(5298102..5298890) Pseudomonas putida F1 5192165 YP_001270035.1 CDS Pput_4731 NC_009512.1 5299115 5299996 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 5299115..5299996 Pseudomonas putida F1 5192166 YP_001270036.1 CDS Pput_4732 NC_009512.1 5299998 5300888 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(5299998..5300888) Pseudomonas putida F1 5191310 YP_001270037.1 CDS Pput_4733 NC_009512.1 5301011 5301352 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5301011..5301352 Pseudomonas putida F1 5191311 YP_001270038.1 CDS Pput_4734 NC_009512.1 5301396 5301926 D PFAM: Rubrerythrin; Ferritin, Dps family protein; Ferritin, Dps family protein 5301396..5301926 Pseudomonas putida F1 5191841 YP_001270039.1 CDS Pput_4735 NC_009512.1 5301965 5304031 R PFAM: AsmA family protein; AsmA family protein complement(5301965..5304031) Pseudomonas putida F1 5191842 YP_001270040.1 CDS Pput_4736 NC_009512.1 5304372 5304869 D hypothetical protein 5304372..5304869 Pseudomonas putida F1 5192621 YP_001270041.1 CDS Pput_4737 NC_009512.1 5304959 5305627 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 5304959..5305627 Pseudomonas putida F1 5192622 YP_001270042.1 CDS Pput_4738 NC_009512.1 5305680 5306780 D PFAM: N-acylglucosamine 2-epimerase; N-acylglucosamine 2-epimerase 5305680..5306780 Pseudomonas putida F1 5194416 YP_001270043.1 CDS Pput_4739 NC_009512.1 5306875 5307123 D hypothetical protein 5306875..5307123 Pseudomonas putida F1 5194417 YP_001270044.1 CDS Pput_4740 NC_009512.1 5307172 5307936 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(5307172..5307936) Pseudomonas putida F1 5191223 YP_001270045.1 CDS Pput_4741 NC_009512.1 5308530 5309246 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(5308530..5309246) Pseudomonas putida F1 5191224 YP_001270046.1 CDS Pput_4742 NC_009512.1 5309243 5310118 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(5309243..5310118) Pseudomonas putida F1 5192774 YP_001270047.1 CDS Pput_4743 NC_009512.1 5310115 5311416 R PFAM: inner-membrane translocator; inner-membrane translocator complement(5310115..5311416) Pseudomonas putida F1 5192775 YP_001270048.1 CDS Pput_4744 NC_009512.1 5311419 5312333 R PFAM: inner-membrane translocator; inner-membrane translocator complement(5311419..5312333) Pseudomonas putida F1 5191208 YP_001270049.1 CDS Pput_4745 NC_009512.1 5312488 5313624 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(5312488..5313624) Pseudomonas putida F1 5191209 YP_001270050.1 CDS Pput_4746 NC_009512.1 5314137 5315342 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5314137..5315342 Pseudomonas putida F1 5191695 YP_001270051.1 CDS nadE NC_009512.1 5315346 5316173 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5315346..5316173 Pseudomonas putida F1 5191696 YP_001270052.1 CDS Pput_4748 NC_009512.1 5316284 5316736 R TIGRFAM: Azurin, proteobacteria; PFAM: blue (type 1) copper domain protein; azurin complement(5316284..5316736) Pseudomonas putida F1 5191862 YP_001270053.1 CDS Pput_4749 NC_009512.1 5317083 5317670 D PFAM: conserved hypothetical protein 730; hypothetical protein 5317083..5317670 Pseudomonas putida F1 5191863 YP_001270054.1 CDS Pput_4750 NC_009512.1 5317792 5320092 R PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein complement(5317792..5320092) Pseudomonas putida F1 5192948 YP_001270055.1 CDS Pput_4751 NC_009512.1 5320377 5320568 R hypothetical protein complement(5320377..5320568) Pseudomonas putida F1 5192949 YP_001270056.1 CDS Pput_4752 NC_009512.1 5321220 5322374 D PFAM: protein of unknown function DUF181; hypothetical protein 5321220..5322374 Pseudomonas putida F1 5192534 YP_001270057.1 CDS Pput_4753 NC_009512.1 5322376 5324031 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5322376..5324031 Pseudomonas putida F1 5192535 YP_001270058.1 CDS Pput_4754 NC_009512.1 5324056 5325453 R unwinds double stranded DNA; replicative DNA helicase complement(5324056..5325453) Pseudomonas putida F1 5194803 YP_001270059.1 CDS rplI NC_009512.1 5325567 5326013 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(5325567..5326013) Pseudomonas putida F1 5194804 YP_001270060.1 CDS Pput_4756 NC_009512.1 5326034 5326897 R hypothetical protein complement(5326034..5326897) Pseudomonas putida F1 5192982 YP_001270061.1 CDS rpsR NC_009512.1 5326931 5327161 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(5326931..5327161) Pseudomonas putida F1 5192983 YP_001270062.1 CDS rpsF NC_009512.1 5327190 5327615 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(5327190..5327615) Pseudomonas putida F1 5192835 YP_001270063.1 CDS Pput_4759 NC_009512.1 5327905 5328651 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase complement(5327905..5328651) Pseudomonas putida F1 5192836 YP_001270064.1 CDS Pput_4760 NC_009512.1 5328648 5331221 R TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(5328648..5331221) Pseudomonas putida F1 5192283 YP_001270065.1 CDS Pput_4761 NC_009512.1 5332001 5333014 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5332001..5333014 Pseudomonas putida F1 5191349 YP_001270066.1 CDS Pput_4762 NC_009512.1 5333014 5334579 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5333014..5334579 Pseudomonas putida F1 5195443 YP_001270067.1 CDS Pput_4763 NC_009512.1 5334664 5335131 R hypothetical protein complement(5334664..5335131) Pseudomonas putida F1 5195444 YP_001270068.1 CDS Pput_4764 NC_009512.1 5335316 5337250 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5335316..5337250) Pseudomonas putida F1 5192273 YP_001270069.1 CDS Pput_4765 NC_009512.1 5337592 5338884 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5337592..5338884) Pseudomonas putida F1 5192274 YP_001270070.1 CDS hisZ NC_009512.1 5338941 5340128 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(5338941..5340128) Pseudomonas putida F1 5195471 YP_001270071.1 CDS Pput_4767 NC_009512.1 5340430 5341299 R TIGRFAM: HflC protein; PFAM: band 7 protein; HflC protein complement(5340430..5341299) Pseudomonas putida F1 5195472 YP_001270072.1 CDS Pput_4768 NC_009512.1 5341299 5342480 R TIGRFAM: HflK protein; PFAM: band 7 protein; HflK protein complement(5341299..5342480) Pseudomonas putida F1 5195109 YP_001270073.1 CDS Pput_4769 NC_009512.1 5342577 5343878 R PFAM: GTP-binding protein, HSR1-related; HSR1-related GTP-binding protein complement(5342577..5343878) Pseudomonas putida F1 5195110 YP_001270074.1 CDS hfq NC_009512.1 5343891 5344151 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(5343891..5344151) Pseudomonas putida F1 5194710 YP_001270075.1 CDS miaA NC_009512.1 5344246 5345217 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(5344246..5345217) Pseudomonas putida F1 5194711 YP_001270076.1 CDS mutL NC_009512.1 5345219 5347120 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(5345219..5347120) Pseudomonas putida F1 5191424 YP_001270077.1 CDS Pput_4773 NC_009512.1 5347117 5348547 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase complement(5347117..5348547) Pseudomonas putida F1 5191425 YP_001270078.1 CDS Pput_4774 NC_009512.1 5348559 5349032 R PFAM: protein of unknown function UPF0079; hypothetical protein complement(5348559..5349032) Pseudomonas putida F1 5194105 YP_001270079.1 CDS Pput_4775 NC_009512.1 5349020 5349943 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; carbohydrate kinase complement(5349020..5349943) Pseudomonas putida F1 5194106 YP_001270080.1 CDS Pput_4776 NC_009512.1 5349946 5351010 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; putative iron-sulfur cluster binding protein 5349946..5351010 Pseudomonas putida F1 5194141 YP_001270081.1 CDS Pput_4777 NC_009512.1 5351151 5351762 R PFAM: protein of unknown function UPF0126; hypothetical protein complement(5351151..5351762) Pseudomonas putida F1 5194142 YP_001270082.1 CDS Pput_4778 NC_009512.1 5351854 5352396 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(5351854..5352396) Pseudomonas putida F1 5192663 YP_001270083.1 CDS Pput_4779 NC_009512.1 5352549 5353580 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5352549..5353580 Pseudomonas putida F1 5192664 YP_001270084.1 CDS motB NC_009512.1 5353888 5354928 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(5353888..5354928) Pseudomonas putida F1 5190941 YP_001270085.1 CDS Pput_4781 NC_009512.1 5354932 5355783 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(5354932..5355783) Pseudomonas putida F1 5190942 YP_001270086.1 CDS Pput_4782 NC_009512.1 5355914 5357449 D PFAM: Metal-dependent hydrolase HDOD; metal-dependent hydrolase HDOD 5355914..5357449 Pseudomonas putida F1 5194664 YP_001270087.1 CDS Pput_4783 NC_009512.1 5357494 5358303 D PFAM: Rhodanese domain protein; rhodanese domain-containing protein 5357494..5358303 Pseudomonas putida F1 5194665 YP_001270088.1 CDS psd NC_009512.1 5358313 5359176 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5358313..5359176 Pseudomonas putida F1 5195054 YP_001270089.1 CDS Pput_4785 NC_009512.1 5359253 5360467 R TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase SerB complement(5359253..5360467) Pseudomonas putida F1 5195055 YP_001270090.1 CDS Pput_4786 NC_009512.1 5360602 5362059 D hypothetical protein 5360602..5362059 Pseudomonas putida F1 5194219 YP_001270091.1 CDS Pput_4787 NC_009512.1 5362469 5363224 R PFAM: protein of unknown function DUF330; hypothetical protein complement(5362469..5363224) Pseudomonas putida F1 5194220 YP_001270092.1 CDS Pput_4788 NC_009512.1 5363352 5365610 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(5363352..5365610) Pseudomonas putida F1 5194901 YP_001270093.1 CDS Pput_4789 NC_009512.1 5365621 5366139 R hypothetical protein complement(5365621..5366139) Pseudomonas putida F1 5194902 YP_001270094.1 CDS Pput_4790 NC_009512.1 5366136 5367122 R hypothetical protein complement(5366136..5367122) Pseudomonas putida F1 5191114 YP_001270095.1 CDS Pput_4791 NC_009512.1 5367119 5369023 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(5367119..5369023) Pseudomonas putida F1 5191115 YP_001270096.1 CDS Pput_4792 NC_009512.1 5369059 5369667 R PFAM: protein of unknown function UPF0227; hypothetical protein complement(5369059..5369667) Pseudomonas putida F1 5190238 YP_001270097.1 CDS Pput_4793 NC_009512.1 5369909 5370709 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein complement(5369909..5370709) Pseudomonas putida F1 5190239 YP_001270098.1 CDS Pput_4794 NC_009512.1 5370795 5371241 R PFAM: protein of unknown function DUF1249; hypothetical protein complement(5370795..5371241) Pseudomonas putida F1 5191981 YP_001270099.1 CDS Pput_4795 NC_009512.1 5371238 5371855 R PFAM: NUDIX hydrolase; NUDIX hydrolase complement(5371238..5371855) Pseudomonas putida F1 5191982 YP_001270100.1 CDS Pput_4796 NC_009512.1 5372041 5372787 D hypothetical protein 5372041..5372787 Pseudomonas putida F1 5190603 YP_001270101.1 CDS Pput_4797 NC_009512.1 5372756 5374039 R TIGRFAM: putative hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; putative hydroxymethylpyrimidine transporter CytX complement(5372756..5374039) Pseudomonas putida F1 5190604 YP_001270102.1 CDS Pput_4798 NC_009512.1 5374205 5376085 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(5374205..5376085) Pseudomonas putida F1 5193663 YP_001270103.1 CDS Pput_4799 NC_009512.1 5376507 5377940 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 5376507..5377940 Pseudomonas putida F1 5193664 YP_001270104.1 CDS Pput_4800 NC_009512.1 5378055 5379326 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(5378055..5379326) Pseudomonas putida F1 5191936 YP_001270105.1 CDS Pput_4801 NC_009512.1 5379338 5380228 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5379338..5380228) Pseudomonas putida F1 5191937 YP_001270106.1 CDS Pput_4802 NC_009512.1 5380315 5380647 D PFAM: small multidrug resistance protein; small multidrug resistance protein 5380315..5380647 Pseudomonas putida F1 5192306 YP_001270107.1 CDS Pput_4803 NC_009512.1 5380736 5381911 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 5380736..5381911 Pseudomonas putida F1 5192307 YP_001270108.1 CDS Pput_4804 NC_009512.1 5381908 5382720 D PFAM: aldo/keto reductase; aldo/keto reductase 5381908..5382720 Pseudomonas putida F1 5192090 YP_001270109.1 CDS Pput_4805 NC_009512.1 5382779 5383747 D hypothetical protein 5382779..5383747 Pseudomonas putida F1 5192091 YP_001270110.1 CDS Pput_4806 NC_009512.1 5383829 5385250 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(5383829..5385250) Pseudomonas putida F1 5193846 YP_001270111.1 CDS Pput_4807 NC_009512.1 5385381 5387189 R TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(5385381..5387189) Pseudomonas putida F1 5193847 YP_001270112.1 CDS Pput_4808 NC_009512.1 5387205 5388380 R PFAM: O-antigen polymerase; O-antigen polymerase complement(5387205..5388380) Pseudomonas putida F1 5195317 YP_001270113.1 CDS Pput_4809 NC_009512.1 5388412 5389086 D hypothetical protein 5388412..5389086 Pseudomonas putida F1 5195318 YP_001270114.1 CDS Pput_4810 NC_009512.1 5389090 5390181 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(5389090..5390181) Pseudomonas putida F1 5194033 YP_001270115.1 CDS Pput_4811 NC_009512.1 5390219 5390992 R hypothetical protein complement(5390219..5390992) Pseudomonas putida F1 5194034 YP_001270116.1 CDS Pput_4812 NC_009512.1 5391058 5392014 R hypothetical protein complement(5391058..5392014) Pseudomonas putida F1 5192976 YP_001270117.1 CDS Pput_4813 NC_009512.1 5392063 5393493 R PFAM: LmbE family protein; LmbE family protein complement(5392063..5393493) Pseudomonas putida F1 5192977 YP_001270118.1 CDS Pput_4814 NC_009512.1 5393463 5394359 R PFAM: Mig-14 family protein; Mig-14 family protein complement(5393463..5394359) Pseudomonas putida F1 5192732 YP_001270119.1 CDS Pput_4815 NC_009512.1 5394359 5395489 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(5394359..5395489) Pseudomonas putida F1 5192733 YP_001270120.1 CDS Pput_4816 NC_009512.1 5395473 5397230 R PFAM: Carbamoyltransferase; carbamoyltransferase complement(5395473..5397230) Pseudomonas putida F1 5191942 YP_001270121.1 CDS Pput_4817 NC_009512.1 5397423 5398259 R PFAM: protein of unknown function DUF519; hypothetical protein complement(5397423..5398259) Pseudomonas putida F1 5191943 YP_001270122.1 CDS Pput_4818 NC_009512.1 5398366 5399844 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; sodium/proline symporter complement(5398366..5399844) Pseudomonas putida F1 5191829 YP_001270123.1 CDS putA NC_009512.1 5400200 5404153 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5400200..5404153 Pseudomonas putida F1 5191830 YP_001270124.1 CDS Pput_4820 NC_009512.1 5404689 5405372 R hypothetical protein complement(5404689..5405372) Pseudomonas putida F1 5195523 YP_001270125.1 CDS Pput_4821 NC_009512.1 5405514 5407316 D PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 5405514..5407316 Pseudomonas putida F1 5195524 YP_001270126.1 CDS Pput_4822 NC_009512.1 5407348 5408790 D PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 5407348..5408790 Pseudomonas putida F1 5194326 YP_001270127.1 CDS Pput_4823 NC_009512.1 5408790 5410109 D hypothetical protein 5408790..5410109 Pseudomonas putida F1 5194327 YP_001270128.1 CDS Pput_4824 NC_009512.1 5410219 5411646 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 5410219..5411646 Pseudomonas putida F1 5195378 YP_001270129.1 CDS Pput_4825 NC_009512.1 5411612 5413096 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5411612..5413096 Pseudomonas putida F1 5195379 YP_001270130.1 CDS Pput_4826 NC_009512.1 5413219 5414400 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 5413219..5414400 Pseudomonas putida F1 5192369 YP_001270131.1 CDS Pput_4827 NC_009512.1 5414612 5416795 D TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; YccS/YhfK family integral membrane protein 5414612..5416795 Pseudomonas putida F1 5192370 YP_001270132.1 CDS Pput_4828 NC_009512.1 5416814 5417512 R SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(5416814..5417512) Pseudomonas putida F1 5193026 YP_001270133.1 CDS Pput_4829 NC_009512.1 5417705 5418157 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5417705..5418157 Pseudomonas putida F1 5193027 YP_001270134.1 CDS Pput_4830 NC_009512.1 5418274 5418570 R hypothetical protein complement(5418274..5418570) Pseudomonas putida F1 5194648 YP_001270135.1 CDS Pput_4831 NC_009512.1 5418583 5419122 R PFAM: protein of unknown function DUF45; hypothetical protein complement(5418583..5419122) Pseudomonas putida F1 5194649 YP_001270136.1 CDS Pput_4832 NC_009512.1 5419123 5421249 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5419123..5421249) Pseudomonas putida F1 5193346 YP_001270137.1 CDS Pput_4833 NC_009512.1 5421462 5422526 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5421462..5422526) Pseudomonas putida F1 5193347 YP_001270138.1 CDS Pput_4834 NC_009512.1 5422627 5422956 R hypothetical protein complement(5422627..5422956) Pseudomonas putida F1 5194383 YP_001270139.1 CDS Pput_4835 NC_009512.1 5423035 5423286 R hypothetical protein complement(5423035..5423286) Pseudomonas putida F1 5194384 YP_001270140.1 CDS pgk NC_009512.1 5423286 5424449 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(5423286..5424449) Pseudomonas putida F1 5192907 YP_001270141.1 CDS Pput_4837 NC_009512.1 5424462 5425523 R TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase complement(5424462..5425523) Pseudomonas putida F1 5192908 YP_001270142.1 CDS Pput_4838 NC_009512.1 5425714 5427711 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5425714..5427711) Pseudomonas putida F1 5192695 YP_001270143.1 CDS Pput_4839 NC_009512.1 5427963 5428955 D PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12; ArsR family transcriptional regulator 5427963..5428955 Pseudomonas putida F1 5192696 YP_001270144.1 CDS Pput_4840 NC_009512.1 5428974 5430164 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5428974..5430164 Pseudomonas putida F1 5191825 YP_001270145.1 CDS ligB NC_009512.1 5430394 5432094 D this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5430394..5432094 Pseudomonas putida F1 5191826 YP_001270146.1 CDS Pput_4842 NC_009512.1 5432227 5432619 D PFAM: protein of unknown function DUF1090; hypothetical protein 5432227..5432619 Pseudomonas putida F1 5192994 YP_001270147.1 CDS Pput_4843 NC_009512.1 5432808 5433266 R PFAM: cytochrome c, class II; cytochrome c, class II complement(5432808..5433266) Pseudomonas putida F1 5192995 YP_001270148.1 CDS Pput_4844 NC_009512.1 5433359 5434537 D PFAM: MltA domain protein; 3D domain protein; MltA domain-containing protein 5433359..5434537 Pseudomonas putida F1 5190949 YP_001270149.1 CDS Pput_4845 NC_009512.1 5434588 5434974 R hypothetical protein complement(5434588..5434974) Pseudomonas putida F1 5190950 YP_001270150.1 CDS Pput_4846 NC_009512.1 5435003 5435836 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(5435003..5435836) Pseudomonas putida F1 5194328 YP_001270151.1 CDS Pput_4847 NC_009512.1 5436119 5437354 D PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 5436119..5437354 Pseudomonas putida F1 5194329 YP_001270152.1 CDS Pput_4848 NC_009512.1 5437467 5437868 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(5437467..5437868) Pseudomonas putida F1 5195202 YP_001270153.1 CDS Pput_4849 NC_009512.1 5438164 5439573 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 5438164..5439573 Pseudomonas putida F1 5195203 YP_001270154.1 CDS Pput_4850 NC_009512.1 5439740 5440585 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 5439740..5440585 Pseudomonas putida F1 5195141 YP_001270155.1 CDS Pput_4851 NC_009512.1 5440679 5441755 D hypothetical protein 5440679..5441755 Pseudomonas putida F1 5195142 YP_001270156.1 CDS Pput_4852 NC_009512.1 5441925 5442713 D SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 5441925..5442713 Pseudomonas putida F1 5190647 YP_001270157.1 CDS Pput_4853 NC_009512.1 5442932 5444815 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 5442932..5444815 Pseudomonas putida F1 5190648 YP_001270158.1 CDS Pput_4854 NC_009512.1 5444956 5445534 R PFAM: YceI family protein; hypothetical protein complement(5444956..5445534) Pseudomonas putida F1 5195226 YP_001270159.1 CDS Pput_4855 NC_009512.1 5445567 5446118 R PFAM: cytochrome B561; cytochrome B561 complement(5445567..5446118) Pseudomonas putida F1 5195227 YP_001270160.1 CDS Pput_4856 NC_009512.1 5446318 5448177 R PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase complement(5446318..5448177) Pseudomonas putida F1 5194463 YP_001270161.1 CDS Pput_4857 NC_009512.1 5448225 5448878 D hypothetical protein 5448225..5448878 Pseudomonas putida F1 5194464 YP_001270162.1 CDS Pput_4858 NC_009512.1 5448958 5450364 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5448958..5450364 Pseudomonas putida F1 5194582 YP_001270163.1 CDS Pput_4859 NC_009512.1 5450513 5451232 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5450513..5451232 Pseudomonas putida F1 5194583 YP_001270164.1 CDS Pput_4860 NC_009512.1 5451233 5451850 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; hemolysin III family channel protein complement(5451233..5451850) Pseudomonas putida F1 5191234 YP_001270165.1 CDS Pput_4861 NC_009512.1 5452058 5452531 R PFAM: CheW domain protein; CheW domain-containing protein complement(5452058..5452531) Pseudomonas putida F1 5191235 YP_001270166.1 CDS Pput_4862 NC_009512.1 5452524 5457464 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; CheA signal transduction histidine kinase complement(5452524..5457464) Pseudomonas putida F1 5194129 YP_001270167.1 CDS Pput_4863 NC_009512.1 5457477 5459537 R PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(5457477..5459537) Pseudomonas putida F1 5194130 YP_001270168.1 CDS Pput_4864 NC_009512.1 5459549 5460103 R PFAM: CheW domain protein; putative CheW protein complement(5459549..5460103) Pseudomonas putida F1 5193735 YP_001270169.1 CDS Pput_4865 NC_009512.1 5460100 5460465 R PFAM: response regulator receiver; response regulator receiver protein complement(5460100..5460465) Pseudomonas putida F1 5193736 YP_001270170.1 CDS Pput_4866 NC_009512.1 5460513 5460914 R PFAM: response regulator receiver; response regulator receiver protein complement(5460513..5460914) Pseudomonas putida F1 5192532 YP_001270171.1 CDS Pput_4867 NC_009512.1 5461153 5462106 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5461153..5462106 Pseudomonas putida F1 5192533 YP_001270172.1 CDS Pput_4868 NC_009512.1 5462198 5463103 D TIGRFAM: TonB family protein; TonB family protein 5462198..5463103 Pseudomonas putida F1 5193183 YP_001270173.1 CDS Pput_4869 NC_009512.1 5463268 5463837 D PFAM: protein of unknown function DUF179; hypothetical protein 5463268..5463837 Pseudomonas putida F1 5193184 YP_001270174.1 CDS Pput_4870 NC_009512.1 5463837 5464262 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5463837..5464262 Pseudomonas putida F1 5190919 YP_001270175.1 CDS Pput_4871 NC_009512.1 5464312 5464830 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5464312..5464830 Pseudomonas putida F1 5190920 YP_001270176.1 CDS pyrB NC_009512.1 5464843 5465847 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 5464843..5465847 Pseudomonas putida F1 5192718 YP_001270177.1 CDS pyrC NC_009512.1 5465844 5467115 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5465844..5467115 Pseudomonas putida F1 5192719 YP_001270178.2 CDS Pput_4874 NC_009512.1 5467587 5468117 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5467587..5468117 Pseudomonas putida F1 5192548 YP_001270179.1 CDS hslU NC_009512.1 5468194 5469537 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5468194..5469537 Pseudomonas putida F1 5192549 YP_001270180.1 CDS Pput_4876 NC_009512.1 5469626 5470081 D PFAM: protein of unknown function DUF971; hypothetical protein 5469626..5470081 Pseudomonas putida F1 5191027 YP_001270181.1 CDS Pput_4877 NC_009512.1 5470350 5472029 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; class II poly(R)-hydroxyalkanoic acid synthase 5470350..5472029 Pseudomonas putida F1 5191028 YP_001270182.1 CDS Pput_4878 NC_009512.1 5472026 5472943 D TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; poly(3-hydroxyalkanoate) depolymerase 5472026..5472943 Pseudomonas putida F1 5191096 YP_001270183.1 CDS Pput_4879 NC_009512.1 5472993 5474675 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; class II poly(R)-hydroxyalkanoic acid synthase 5472993..5474675 Pseudomonas putida F1 5191097 YP_001270184.1 CDS Pput_4880 NC_009512.1 5474688 5475302 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 5474688..5475302 Pseudomonas putida F1 5194992 YP_001270185.1 CDS Pput_4881 NC_009512.1 5475414 5476199 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein complement(5475414..5476199) Pseudomonas putida F1 5194993 YP_001270186.1 CDS Pput_4882 NC_009512.1 5476210 5476629 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein complement(5476210..5476629) Pseudomonas putida F1 5190754 YP_001270187.1 CDS Pput_4883 NC_009512.1 5476809 5481569 D hypothetical protein 5476809..5481569 Pseudomonas putida F1 5190755 YP_001270188.1 CDS Pput_4884 NC_009512.1 5481588 5481917 R TIGRFAM: putative polyhydroxyalkanoic acid system protein; putative polyhydroxyalkanoic acid system protein complement(5481588..5481917) Pseudomonas putida F1 5191328 YP_001270189.1 CDS ubiE NC_009512.1 5481988 5482758 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5481988..5482758 Pseudomonas putida F1 5191329 YP_001270190.1 CDS Pput_4886 NC_009512.1 5482758 5483381 D PFAM: protein of unknown function DUF1243; hypothetical protein 5482758..5483381 Pseudomonas putida F1 5190310 YP_001270191.1 CDS Pput_4887 NC_009512.1 5483378 5485000 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; 2-polyprenylphenol 6-hydroxylase 5483378..5485000 Pseudomonas putida F1 5190311 YP_001270192.1 CDS hisI NC_009512.1 5485073 5485465 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5485073..5485465 Pseudomonas putida F1 5190894 YP_001270193.1 CDS hisE NC_009512.1 5485467 5485802 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5485467..5485802 Pseudomonas putida F1 5190895 YP_001270194.1 CDS tatA NC_009512.1 5485828 5486100 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 5485828..5486100 Pseudomonas putida F1 5190665 YP_001270195.1 CDS tatB NC_009512.1 5486104 5486481 D Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5486104..5486481 Pseudomonas putida F1 5190666 YP_001270196.1 CDS Pput_4892 NC_009512.1 5486478 5487266 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 5486478..5487266 Pseudomonas putida F1 5195328 YP_001270197.1 CDS Pput_4893 NC_009512.1 5487263 5487970 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5487263..5487970 Pseudomonas putida F1 5195329 YP_001270198.1 CDS Pput_4894 NC_009512.1 5488072 5489988 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5488072..5489988 Pseudomonas putida F1 5194368 YP_001270199.1 CDS Pput_4895 NC_009512.1 5490448 5492667 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 5490448..5492667 Pseudomonas putida F1 5194369 YP_001270200.1 CDS Pput_4896 NC_009512.1 5492777 5493511 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(5492777..5493511) Pseudomonas putida F1 5192560 YP_001270201.1 CDS Pput_4897 NC_009512.1 5493504 5494466 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit complement(5493504..5494466) Pseudomonas putida F1 5192561 YP_001270202.1 CDS Pput_4898 NC_009512.1 5494546 5495346 R PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein complement(5494546..5495346) Pseudomonas putida F1 5194624 YP_001270203.1 CDS Pput_4899 NC_009512.1 5495684 5498257 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(5495684..5498257) Pseudomonas putida F1 5194625 YP_001270204.1 CDS mdoG NC_009512.1 5498250 5499989 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(5498250..5499989) Pseudomonas putida F1 5195124 YP_001270205.1 CDS Pput_4901 NC_009512.1 5500253 5500690 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(5500253..5500690) Pseudomonas putida F1 5195125 YP_001270206.1 CDS Pput_4902 NC_009512.1 5500687 5501658 R TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(5500687..5501658) Pseudomonas putida F1 5192689 YP_001270207.1 CDS Pput_4903 NC_009512.1 5501828 5502631 R PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(5501828..5502631) Pseudomonas putida F1 5192690 YP_001270208.1 CDS Pput_4904 NC_009512.1 5502642 5503847 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(5502642..5503847) Pseudomonas putida F1 5193037 YP_001270209.1 CDS Pput_4905 NC_009512.1 5503863 5505266 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(5503863..5505266) Pseudomonas putida F1 5193038 YP_001270210.1 CDS Pput_4906 NC_009512.1 5505424 5506956 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(5505424..5506956) Pseudomonas putida F1 5193301 YP_001270211.1 CDS Pput_4907 NC_009512.1 5507065 5508738 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(5507065..5508738) Pseudomonas putida F1 5193302 YP_001270212.1 CDS Pput_4908 NC_009512.1 5508982 5509554 R PFAM: protein of unknown function DUF886; hypothetical protein complement(5508982..5509554) Pseudomonas putida F1 5190661 YP_001270213.1 CDS Pput_4909 NC_009512.1 5509551 5510297 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(5509551..5510297) Pseudomonas putida F1 5190662 YP_001270214.1 CDS Pput_4910 NC_009512.1 5510406 5511770 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5510406..5511770 Pseudomonas putida F1 5193179 YP_001270215.1 CDS Pput_4911 NC_009512.1 5511926 5512498 R PFAM: Lipocalin family protein; lipocalin family protein complement(5511926..5512498) Pseudomonas putida F1 5193180 YP_001270216.1 CDS Pput_4912 NC_009512.1 5512495 5512749 R hypothetical protein complement(5512495..5512749) Pseudomonas putida F1 5192528 YP_001270217.1 CDS Pput_4913 NC_009512.1 5512977 5513573 R PFAM: protein of unknown function DUF924; hypothetical protein complement(5512977..5513573) Pseudomonas putida F1 5192529 YP_001270218.1 CDS Pput_4914 NC_009512.1 5513577 5514587 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(5513577..5514587) Pseudomonas putida F1 5192974 YP_001270219.1 CDS Pput_4915 NC_009512.1 5514825 5517275 R TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(5514825..5517275) Pseudomonas putida F1 5192975 YP_001270220.1 CDS Pput_4916 NC_009512.1 5517460 5517864 D PFAM: protein of unknown function UPF0153; hypothetical protein 5517460..5517864 Pseudomonas putida F1 5194221 YP_001270221.1 CDS Pput_4917 NC_009512.1 5517963 5519384 R PhoPQ-activated pathogenicity-like protein complement(5517963..5519384) Pseudomonas putida F1 5194222 YP_001270222.1 CDS Pput_4918 NC_009512.1 5519570 5521390 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; GTP-binding protein TypA complement(5519570..5521390) Pseudomonas putida F1 5193466 YP_001270223.1 CDS Pput_4919 NC_009512.1 5521519 5522973 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(5521519..5522973) Pseudomonas putida F1 5193467 YP_001270224.1 CDS Pput_4920 NC_009512.1 5523424 5524830 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase 5523424..5524830 Pseudomonas putida F1 5190880 YP_001270225.1 CDS Pput_4921 NC_009512.1 5524979 5525521 D TIGRFAM: chorismate mutase, putative; PFAM: Chorismate mutase; chorismate mutase 5524979..5525521 Pseudomonas putida F1 5190881 YP_001270226.1 CDS Pput_4922 NC_009512.1 5525789 5526874 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; nitrogen-specific signal transduction histidine kinase NtrB 5525789..5526874 Pseudomonas putida F1 5192048 YP_001270227.1 CDS Pput_4923 NC_009512.1 5526871 5528307 D TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 5526871..5528307 Pseudomonas putida F1 5192049 YP_001270228.1 CDS Pput_4924 NC_009512.1 5528767 5529204 R hypothetical protein complement(5528767..5529204) Pseudomonas putida F1 5192501 YP_001270229.1 CDS Pput_4925 NC_009512.1 5529203 5529664 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 5529203..5529664 Pseudomonas putida F1 5192502 YP_001270230.1 CDS Pput_4926 NC_009512.1 5529817 5530302 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5529817..5530302) Pseudomonas putida F1 5192390 YP_001270231.1 CDS Pput_4927 NC_009512.1 5530342 5530596 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 complement(5530342..5530596) Pseudomonas putida F1 5192391 YP_001270232.1 CDS Pput_4928 NC_009512.1 5530598 5531011 R PFAM: Rhodanese domain protein; rhodanese domain-containing protein complement(5530598..5531011) Pseudomonas putida F1 5191229 YP_001270233.1 CDS Pput_4929 NC_009512.1 5531219 5532754 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5531219..5532754 Pseudomonas putida F1 5191230 YP_001270234.1 CDS Pput_4930 NC_009512.1 5532895 5534211 D PFAM: peptidase M23B; peptidase M23B 5532895..5534211 Pseudomonas putida F1 5192921 YP_001270235.1 CDS Pput_4931 NC_009512.1 5534446 5535762 D TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 5534446..5535762 Pseudomonas putida F1 5192922 YP_001270236.1 CDS Pput_4932 NC_009512.1 5535771 5536538 D PFAM: protein of unknown function DUF610, YibQ; hypothetical protein 5535771..5536538 Pseudomonas putida F1 5195475 YP_001270237.1 CDS Pput_4933 NC_009512.1 5536578 5541170 R hypothetical protein complement(5536578..5541170) Pseudomonas putida F1 5195476 YP_001270238.1 CDS Pput_4934 NC_009512.1 5541381 5543384 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter complement(5541381..5543384) Pseudomonas putida F1 5195362 YP_001270239.1 CDS Pput_4935 NC_009512.1 5543860 5544516 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 5543860..5544516 Pseudomonas putida F1 5195363 YP_001270240.1 CDS Pput_4936 NC_009512.1 5544556 5546028 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5544556..5546028 Pseudomonas putida F1 5194006 YP_001270241.1 CDS Pput_4937 NC_009512.1 5546106 5547803 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5546106..5547803 Pseudomonas putida F1 5194007 YP_001270242.1 CDS Pput_4938 NC_009512.1 5547846 5549996 R hypothetical protein complement(5547846..5549996) Pseudomonas putida F1 5193518 YP_001270243.1 CDS Pput_4939 NC_009512.1 5550174 5551916 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5550174..5551916 Pseudomonas putida F1 5193519 YP_001270244.1 CDS Pput_4940 NC_009512.1 5551952 5555260 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5551952..5555260 Pseudomonas putida F1 5193746 YP_001270245.1 CDS Pput_4941 NC_009512.1 5555423 5556883 D PFAM: protein of unknown function UPF0061; hypothetical protein 5555423..5556883 Pseudomonas putida F1 5193747 YP_001270246.1 CDS Pput_4942 NC_009512.1 5557014 5557448 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 5557014..5557448 Pseudomonas putida F1 5192815 YP_001270247.1 CDS Pput_4943 NC_009512.1 5557445 5558218 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(5557445..5558218) Pseudomonas putida F1 5192816 YP_001270248.1 CDS Pput_4944 NC_009512.1 5558295 5559194 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5558295..5559194) Pseudomonas putida F1 5191966 YP_001270249.1 CDS Pput_4945 NC_009512.1 5559303 5560547 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5559303..5560547 Pseudomonas putida F1 5191967 YP_001270250.1 CDS Pput_4946 NC_009512.1 5560615 5560962 R PFAM: conserved hypothetical protein 156; hypothetical protein complement(5560615..5560962) Pseudomonas putida F1 5192333 YP_001270251.1 CDS hemE NC_009512.1 5561081 5562145 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(5561081..5562145) Pseudomonas putida F1 5192334 YP_001270252.1 CDS gltD NC_009512.1 5562340 5563758 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(5562340..5563758) Pseudomonas putida F1 5190873 YP_001270253.1 CDS gltB NC_009512.1 5563882 5568327 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(5563882..5568327) Pseudomonas putida F1 5190874 YP_001270254.1 CDS Pput_4950 NC_009512.1 5568701 5570302 R PFAM: Sporulation domain protein; sporulation domain-containing protein complement(5568701..5570302) Pseudomonas putida F1 5193552 YP_001270255.1 CDS aroB NC_009512.1 5570318 5571415 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(5570318..5571415) Pseudomonas putida F1 5193553 YP_001270256.1 CDS aroK NC_009512.1 5571512 5572030 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(5571512..5572030) Pseudomonas putida F1 5191787 YP_001270257.1 CDS Pput_4953 NC_009512.1 5572035 5573297 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; type IV pilus secretin PilQ complement(5572035..5573297) Pseudomonas putida F1 5191788 YP_001270258.1 CDS Pput_4954 NC_009512.1 5573221 5574222 R hypothetical protein complement(5573221..5574222) Pseudomonas putida F1 5191996 YP_001270259.1 CDS Pput_4955 NC_009512.1 5574234 5574770 R PFAM: Fimbrial assembly family protein; fimbrial assembly family protein complement(5574234..5574770) Pseudomonas putida F1 5191997 YP_001270260.1 CDS Pput_4956 NC_009512.1 5574767 5575648 R Tfp pilus assembly protein ATPase PilM-like protein complement(5574767..5575648) Pseudomonas putida F1 5194436 YP_001270261.1 CDS Pput_4957 NC_009512.1 5575852 5578305 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 5575852..5578305 Pseudomonas putida F1 5194437 YP_001270262.1 CDS Pput_4958 NC_009512.1 5578487 5579764 R PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; malate dehydrogenase complement(5578487..5579764) Pseudomonas putida F1 5191549 YP_001270263.1 CDS Pput_4959 NC_009512.1 5579933 5580754 R PFAM: nuclease (SNase domain protein); nuclease complement(5579933..5580754) Pseudomonas putida F1 5191550 YP_001270264.1 CDS Pput_4960 NC_009512.1 5580757 5581059 R PFAM: ribosomal protein L31; 50S ribosomal protein L31 complement(5580757..5581059) Pseudomonas putida F1 5191893 YP_001270265.1 CDS Pput_4961 NC_009512.1 5581140 5583359 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5581140..5583359 Pseudomonas putida F1 5191894 YP_001270266.1 CDS argS NC_009512.1 5583547 5585283 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5583547..5585283 Pseudomonas putida F1 5190244 YP_001270267.1 CDS Pput_4963 NC_009512.1 5585285 5585983 D PFAM: Sporulation domain protein; sporulation domain-containing protein 5585285..5585983 Pseudomonas putida F1 5190245 YP_001270268.1 CDS Pput_4964 NC_009512.1 5586075 5586494 R PFAM: TM2 domain containing protein+B7201; TM2 domain-containing protein complement(5586075..5586494) Pseudomonas putida F1 5194558 YP_001270269.1 CDS Pput_4965 NC_009512.1 5586661 5587287 D PFAM: NLP/P60 protein; NLP/P60 protein 5586661..5587287 Pseudomonas putida F1 5194559 YP_001270270.1 CDS Pput_4966 NC_009512.1 5587416 5588414 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(5587416..5588414) Pseudomonas putida F1 5193218 YP_001270271.1 CDS Pput_4967 NC_009512.1 5588480 5589166 D PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 5588480..5589166 Pseudomonas putida F1 5193219 YP_001270272.1 CDS Pput_4968 NC_009512.1 5589205 5590023 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5589205..5590023 Pseudomonas putida F1 5192700 YP_001270273.1 CDS Pput_4969 NC_009512.1 5590034 5590624 D PFAM: protein of unknown function YGGT; hypothetical protein 5590034..5590624 Pseudomonas putida F1 5192701 YP_001270274.1 CDS metX NC_009512.1 5590724 5591863 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5590724..5591863 Pseudomonas putida F1 5191187 YP_001270275.1 CDS Pput_4971 NC_009512.1 5591871 5592491 D TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; methionine biosynthesis protein MetW 5591871..5592491 Pseudomonas putida F1 5191188 YP_001270276.1 CDS Pput_4972 NC_009512.1 5592514 5592948 D hypothetical protein 5592514..5592948 Pseudomonas putida F1 5194868 YP_001270277.1 CDS Pput_4973 NC_009512.1 5592945 5593541 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 5592945..5593541 Pseudomonas putida F1 5194869 YP_001270278.1 CDS Pput_4974 NC_009512.1 5593538 5594713 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5593538..5594713 Pseudomonas putida F1 5190252 YP_001270279.1 CDS Pput_4975 NC_009512.1 5594723 5595049 D hypothetical protein 5594723..5595049 Pseudomonas putida F1 5190253 YP_001270280.1 CDS trmB NC_009512.1 5595258 5595980 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(5595258..5595980) Pseudomonas putida F1 5193705 YP_001270281.1 CDS thiG NC_009512.1 5595990 5596802 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(5595990..5596802) Pseudomonas putida F1 5193706 YP_001270282.1 CDS Pput_4978 NC_009512.1 5596857 5597057 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(5596857..5597057) Pseudomonas putida F1 5191558 YP_001270283.1 CDS Pput_4979 NC_009512.1 5597160 5597531 R PFAM: protein of unknown function DUF423; hypothetical protein complement(5597160..5597531) Pseudomonas putida F1 5191559 YP_001270284.1 CDS mtgA NC_009512.1 5597596 5598306 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5597596..5598306 Pseudomonas putida F1 5194133 YP_001270285.1 CDS Pput_4981 NC_009512.1 5598557 5599411 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(5598557..5599411) Pseudomonas putida F1 5194134 YP_001270286.1 CDS Pput_4982 NC_009512.1 5599523 5600548 R PFAM: protein of unknown function DUF214; hypothetical protein complement(5599523..5600548) Pseudomonas putida F1 5191227 YP_001270287.1 CDS Pput_4983 NC_009512.1 5600545 5601216 R TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(5600545..5601216) Pseudomonas putida F1 5191228 YP_001270288.1 CDS Pput_4984 NC_009512.1 5601219 5602712 R TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(5601219..5602712) Pseudomonas putida F1 5191286 YP_001270289.1 CDS Pput_4985 NC_009512.1 5602944 5604299 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5602944..5604299 Pseudomonas putida F1 5191287 YP_001270290.1 CDS Pput_4986 NC_009512.1 5604292 5605782 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5604292..5605782 Pseudomonas putida F1 5190806 YP_001270291.1 CDS Pput_4987 NC_009512.1 5605782 5606384 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; putative methyltransferase 5605782..5606384 Pseudomonas putida F1 5190807 YP_001270292.1 CDS Pput_4988 NC_009512.1 5606475 5607776 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5606475..5607776 Pseudomonas putida F1 5191086 YP_001270293.1 CDS Pput_4989 NC_009512.1 5607769 5609139 D PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 5607769..5609139 Pseudomonas putida F1 5191087 YP_001270294.1 CDS Pput_4990 NC_009512.1 5609200 5610192 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 5609200..5610192 Pseudomonas putida F1 5192693 YP_001270295.1 CDS Pput_4991 NC_009512.1 5610424 5611374 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase, IS111A/IS1328/IS1533 complement(5610424..5611374) Pseudomonas putida F1 5192694 YP_001270296.1 CDS Pput_4992 NC_009512.1 5611669 5612523 R PFAM: Rhodanese domain protein; rhodanese domain-containing protein complement(5611669..5612523) Pseudomonas putida F1 5191835 YP_001270297.1 CDS Pput_4993 NC_009512.1 5612559 5613224 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(5612559..5613224) Pseudomonas putida F1 5191836 YP_001270298.1 CDS Pput_4994 NC_009512.1 5613376 5614800 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 5613376..5614800 Pseudomonas putida F1 5194271 YP_001270299.1 CDS Pput_4995 NC_009512.1 5614811 5615296 D hypothetical protein 5614811..5615296 Pseudomonas putida F1 5194272 YP_001270300.1 CDS Pput_4996 NC_009512.1 5615317 5616915 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 5615317..5616915 Pseudomonas putida F1 5192493 YP_001270301.1 CDS coaD NC_009512.1 5617028 5617507 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5617028..5617507 Pseudomonas putida F1 5192494 YP_001270302.1 CDS Pput_4998 NC_009512.1 5617615 5617866 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 5617615..5617866 Pseudomonas putida F1 5192588 YP_001270303.1 CDS Pput_4999 NC_009512.1 5618027 5618839 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(5618027..5618839) Pseudomonas putida F1 5192589 YP_001270304.1 CDS Pput_5000 NC_009512.1 5618843 5619715 R PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein complement(5618843..5619715) Pseudomonas putida F1 5195439 YP_001270305.1 CDS Pput_5001 NC_009512.1 5619837 5621033 D PFAM: conserved hypothetical protein 95; hypothetical protein 5619837..5621033 Pseudomonas putida F1 5195440 YP_001270306.1 CDS Pput_5002 NC_009512.1 5621304 5623145 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5621304..5623145 Pseudomonas putida F1 5195013 YP_001270307.1 CDS Pput_5003 NC_009512.1 5623261 5624316 R hypothetical protein complement(5623261..5624316) Pseudomonas putida F1 5195014 YP_001270308.1 CDS Pput_5004 NC_009512.1 5624561 5625952 D PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 5624561..5625952 Pseudomonas putida F1 5191761 YP_001270309.1 CDS Pput_5005 NC_009512.1 5626228 5626743 R PFAM: dihydrofolate reductase region; dihydrofolate reductase complement(5626228..5626743) Pseudomonas putida F1 5191762 YP_001270310.1 CDS Pput_5006 NC_009512.1 5626798 5628189 D hypothetical protein 5626798..5628189 Pseudomonas putida F1 5192772 YP_001270311.1 CDS Pput_5007 NC_009512.1 5628182 5629546 D PFAM: GTP-binding protein, HSR1-related; HSR1-related GTP-binding protein 5628182..5629546 Pseudomonas putida F1 5192773 YP_001270312.1 CDS Pput_5008 NC_009512.1 5629821 5630846 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(5629821..5630846) Pseudomonas putida F1 5190322 YP_001270313.1 CDS Pput_5009 NC_009512.1 5630865 5632589 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5630865..5632589) Pseudomonas putida F1 5190323 YP_001270314.1 CDS Pput_5010 NC_009512.1 5632591 5633649 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(5632591..5633649) Pseudomonas putida F1 5192363 YP_001270315.1 CDS Pput_5011 NC_009512.1 5633881 5634750 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5633881..5634750) Pseudomonas putida F1 5192364 YP_001270316.1 CDS Pput_5012 NC_009512.1 5634760 5637012 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(5634760..5637012) Pseudomonas putida F1 5192919 YP_001270317.1 CDS Pput_5013 NC_009512.1 5637096 5637539 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; Transcription regulator MerR, DNA binding; MerR family transcriptional regulator 5637096..5637539 Pseudomonas putida F1 5192920 YP_001270318.1 CDS Pput_5014 NC_009512.1 5637658 5637999 R thymidylate synthase-like protein complement(5637658..5637999) Pseudomonas putida F1 5195007 YP_001270319.1 CDS Pput_5015 NC_009512.1 5638286 5642776 D SMART: AAA ATPase; ATPase AAA 5638286..5642776 Pseudomonas putida F1 5195008 YP_001270320.1 CDS Pput_5016 NC_009512.1 5642897 5644459 D hypothetical protein 5642897..5644459 Pseudomonas putida F1 5191156 YP_001270321.1 CDS Pput_5017 NC_009512.1 5645216 5646046 D hypothetical protein 5645216..5646046 Pseudomonas putida F1 5191157 YP_001270322.1 CDS Pput_5018 NC_009512.1 5646528 5646737 R hypothetical protein complement(5646528..5646737) Pseudomonas putida F1 5190651 YP_001270323.1 CDS Pput_5019 NC_009512.1 5646734 5647123 R hypothetical protein complement(5646734..5647123) Pseudomonas putida F1 5190652 YP_001270324.1 CDS Pput_5020 NC_009512.1 5647534 5647977 D hypothetical protein 5647534..5647977 Pseudomonas putida F1 5194297 YP_001270325.1 CDS Pput_5021 NC_009512.1 5648212 5648856 R TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit complement(5648212..5648856) Pseudomonas putida F1 5194298 YP_001270326.1 CDS Pput_5022 NC_009512.1 5648863 5650266 R TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit complement(5648863..5650266) Pseudomonas putida F1 5191191 YP_001270327.1 CDS Pput_5023 NC_009512.1 5650548 5651879 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5650548..5651879) Pseudomonas putida F1 5191192 YP_001270328.1 CDS Pput_5024 NC_009512.1 5651965 5652900 R PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase complement(5651965..5652900) Pseudomonas putida F1 5193090 YP_001270329.1 CDS Pput_5025 NC_009512.1 5652897 5654087 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(5652897..5654087) Pseudomonas putida F1 5193091 YP_001270330.1 CDS Pput_5026 NC_009512.1 5654195 5655103 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5654195..5655103) Pseudomonas putida F1 5191152 YP_001270331.1 CDS Pput_5027 NC_009512.1 5655278 5655487 R hypothetical protein complement(5655278..5655487) Pseudomonas putida F1 5191153 YP_001270332.1 CDS Pput_5028 NC_009512.1 5655509 5655901 R hypothetical protein complement(5655509..5655901) Pseudomonas putida F1 5190541 YP_001270333.1 CDS Pput_5029 NC_009512.1 5655965 5657032 R hypothetical protein complement(5655965..5657032) Pseudomonas putida F1 5190542 YP_001270334.1 CDS Pput_5030 NC_009512.1 5657225 5658505 R PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase complement(5657225..5658505) Pseudomonas putida F1 5192253 YP_001270335.1 CDS Pput_5031 NC_009512.1 5658492 5658920 R PFAM: peptidase S24, S26A and S26B; putative prophage repressor complement(5658492..5658920) Pseudomonas putida F1 5192254 YP_001270336.1 CDS Pput_5032 NC_009512.1 5659199 5660776 D hypothetical protein 5659199..5660776 Pseudomonas putida F1 5192341 YP_001270337.1 CDS Pput_5034 NC_009512.1 5661301 5663019 D hypothetical protein 5661301..5663019 Pseudomonas putida F1 5191336 YP_001270338.1 CDS Pput_5035 NC_009512.1 5663077 5663838 R hypothetical protein complement(5663077..5663838) Pseudomonas putida F1 5191956 YP_001270339.1 CDS Pput_5037 NC_009512.1 5664693 5665058 R hypothetical protein complement(5664693..5665058) Pseudomonas putida F1 5191337 YP_001270340.1 CDS Pput_5038 NC_009512.1 5665399 5666025 R hypothetical protein complement(5665399..5666025) Pseudomonas putida F1 5195457 YP_001270341.1 CDS Pput_5039 NC_009512.1 5666047 5666430 R hypothetical protein complement(5666047..5666430) Pseudomonas putida F1 5195458 YP_001270342.1 CDS Pput_5040 NC_009512.1 5666433 5666912 R hypothetical protein complement(5666433..5666912) Pseudomonas putida F1 5193940 YP_001270343.1 CDS Pput_5041 NC_009512.1 5666943 5667458 R hypothetical protein complement(5666943..5667458) Pseudomonas putida F1 5193941 YP_001270344.1 CDS Pput_5042 NC_009512.1 5668006 5668254 R hypothetical protein complement(5668006..5668254) Pseudomonas putida F1 5192445 YP_001270345.1 CDS Pput_5043 NC_009512.1 5668350 5669183 R PFAM: thymidylate synthase; thymidylate synthase complement(5668350..5669183) Pseudomonas putida F1 5192446 YP_001270346.1 CDS Pput_5044 NC_009512.1 5669180 5669692 R hypothetical protein complement(5669180..5669692) Pseudomonas putida F1 5192798 YP_001270347.1 CDS Pput_5045 NC_009512.1 5669692 5671776 R hypothetical protein complement(5669692..5671776) Pseudomonas putida F1 5192799 YP_001270348.1 CDS Pput_5046 NC_009512.1 5671779 5674157 R PFAM: phage integrase family protein; phage integrase family protein complement(5671779..5674157) Pseudomonas putida F1 5192249 YP_001270349.1 CDS Pput_5047 NC_009512.1 5674154 5675383 R PFAM: phage integrase family protein; phage integrase family protein complement(5674154..5675383) Pseudomonas putida F1 5192250 YP_001270350.1 CDS Pput_5048 NC_009512.1 5675472 5676176 R PFAM: thymidylate synthase; thymidylate synthase complement(5675472..5676176) Pseudomonas putida F1 5193356 YP_001270351.1 CDS Pput_5049 NC_009512.1 5676228 5677034 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(5676228..5677034) Pseudomonas putida F1 5193357 YP_001270352.1 CDS Pput_5050 NC_009512.1 5677051 5677833 R PFAM: protein of unknown function DUF81; hypothetical protein complement(5677051..5677833) Pseudomonas putida F1 5190637 YP_001270353.1 CDS Pput_5051 NC_009512.1 5677964 5678710 D PFAM: protein of unknown function DUF833; hypothetical protein 5677964..5678710 Pseudomonas putida F1 5190638 YP_001270354.1 CDS Pput_5052 NC_009512.1 5678998 5681277 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase PtsP complement(5678998..5681277) Pseudomonas putida F1 5192522 YP_001270355.1 CDS Pput_5053 NC_009512.1 5681300 5681779 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(5681300..5681779) Pseudomonas putida F1 5192523 YP_001270356.1 CDS Pput_5054 NC_009512.1 5681921 5682577 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 5681921..5682577 Pseudomonas putida F1 5190925 YP_001270357.1 CDS Pput_5055 NC_009512.1 5682707 5683132 R hypothetical protein complement(5682707..5683132) Pseudomonas putida F1 5190926 YP_001270358.1 CDS Pput_5056 NC_009512.1 5683202 5684716 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(5683202..5684716) Pseudomonas putida F1 5193484 YP_001270359.1 CDS Pput_5057 NC_009512.1 5684850 5685524 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5684850..5685524 Pseudomonas putida F1 5193485 YP_001270360.1 CDS Pput_5058 NC_009512.1 5685629 5686531 R PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein complement(5685629..5686531) Pseudomonas putida F1 5190998 YP_001270361.1 CDS Pput_5059 NC_009512.1 5686622 5687542 R PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein complement(5686622..5687542) Pseudomonas putida F1 5190999 YP_001270362.1 CDS Pput_5060 NC_009512.1 5687745 5688410 R PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(5687745..5688410) Pseudomonas putida F1 5190780 YP_001270363.1 CDS Pput_5061 NC_009512.1 5688437 5689858 R PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(5688437..5689858) Pseudomonas putida F1 5190781 YP_001270364.1 CDS Pput_5062 NC_009512.1 5690006 5691235 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5690006..5691235 Pseudomonas putida F1 5192574 YP_001270365.1 CDS Pput_5063 NC_009512.1 5691283 5691759 R hypothetical protein complement(5691283..5691759) Pseudomonas putida F1 5192575 YP_001270366.1 CDS Pput_5064 NC_009512.1 5691983 5692471 D hypothetical protein 5691983..5692471 Pseudomonas putida F1 5194799 YP_001270367.1 CDS Pput_5065 NC_009512.1 5692662 5693165 R PFAM: protein of unknown function DUF523; hypothetical protein complement(5692662..5693165) Pseudomonas putida F1 5194800 YP_001270368.1 CDS Pput_5066 NC_009512.1 5693152 5693787 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase complement(5693152..5693787) Pseudomonas putida F1 5194207 YP_001270369.1 CDS Pput_5067 NC_009512.1 5693898 5694650 D hypothetical protein 5693898..5694650 Pseudomonas putida F1 5194208 YP_001270370.1 CDS Pput_5068 NC_009512.1 5694651 5695637 R lysophospholipase-like protein complement(5694651..5695637) Pseudomonas putida F1 5192219 YP_001270371.1 CDS Pput_5069 NC_009512.1 5695859 5696428 D hypothetical protein 5695859..5696428 Pseudomonas putida F1 5192220 YP_001270372.1 CDS Pput_5070 NC_009512.1 5696407 5696973 R PFAM: transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase complement(5696407..5696973) Pseudomonas putida F1 5193274 YP_001270373.1 CDS Pput_5071 NC_009512.1 5697060 5699426 D PFAM: peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 5697060..5699426 Pseudomonas putida F1 5193275 YP_001270374.1 CDS Pput_5072 NC_009512.1 5699634 5700569 R PFAM: NLPA lipoprotein; NLPA lipoprotein complement(5699634..5700569) Pseudomonas putida F1 5191448 YP_001270375.1 CDS Pput_5073 NC_009512.1 5700595 5701425 R PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein complement(5700595..5701425) Pseudomonas putida F1 5191449 YP_001270376.1 CDS Pput_5074 NC_009512.1 5701490 5702071 R PFAM: protein of unknown function DUF1234; hypothetical protein complement(5701490..5702071) Pseudomonas putida F1 5191763 YP_001270377.1 CDS Pput_5075 NC_009512.1 5702282 5703271 R TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(5702282..5703271) Pseudomonas putida F1 5191764 YP_001270378.1 CDS Pput_5076 NC_009512.1 5703275 5704147 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease complement(5703275..5704147) Pseudomonas putida F1 5194684 YP_001270379.1 CDS Pput_5077 NC_009512.1 5704159 5704977 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease complement(5704159..5704977) Pseudomonas putida F1 5194685 YP_001270380.1 CDS Pput_5078 NC_009512.1 5705163 5706170 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein complement(5705163..5706170) Pseudomonas putida F1 5193130 YP_001270381.1 CDS Pput_5079 NC_009512.1 5706221 5706403 R hypothetical protein complement(5706221..5706403) Pseudomonas putida F1 5193131 YP_001270382.1 CDS Pput_5080 NC_009512.1 5706637 5709690 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(5706637..5709690) Pseudomonas putida F1 5192277 YP_001270383.1 CDS Pput_5081 NC_009512.1 5709687 5710754 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(5709687..5710754) Pseudomonas putida F1 5192278 YP_001270384.1 CDS Pput_5082 NC_009512.1 5710751 5711839 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(5710751..5711839) Pseudomonas putida F1 5190816 YP_001270385.1 CDS Pput_5083 NC_009512.1 5712093 5712548 D PFAM: protein of unknown function DUF1568; hypothetical protein 5712093..5712548 Pseudomonas putida F1 5190817 YP_001270386.1 CDS Pput_5084 NC_009512.1 5712655 5713548 R PFAM: binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase complement(5712655..5713548) Pseudomonas putida F1 5190994 YP_001270387.1 CDS Pput_5085 NC_009512.1 5713545 5714465 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5713545..5714465) Pseudomonas putida F1 5190995 YP_001270388.1 CDS Pput_5086 NC_009512.1 5714462 5715604 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(5714462..5715604) Pseudomonas putida F1 5190669 YP_001270389.1 CDS Pput_5087 NC_009512.1 5715675 5716769 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(5715675..5716769) Pseudomonas putida F1 5190670 YP_001270390.1 CDS Pput_5088 NC_009512.1 5716926 5718023 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(5716926..5718023) Pseudomonas putida F1 5190643 YP_001270391.1 CDS Pput_5089 NC_009512.1 5718192 5719553 R PFAM: aminotransferase class-III; putative aminotransferase complement(5718192..5719553) Pseudomonas putida F1 5190644 YP_001270392.1 CDS Pput_5090 NC_009512.1 5719602 5720960 R PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase complement(5719602..5720960) Pseudomonas putida F1 5190828 YP_001270393.1 CDS Pput_5091 NC_009512.1 5721535 5722911 D PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 5721535..5722911 Pseudomonas putida F1 5190829 YP_001270394.1 CDS Pput_5092 NC_009512.1 5723057 5724355 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(5723057..5724355) Pseudomonas putida F1 5194562 YP_001270395.1 CDS Pput_5093 NC_009512.1 5724480 5725622 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(5724480..5725622) Pseudomonas putida F1 5194563 YP_001270396.1 CDS Pput_5094 NC_009512.1 5725740 5727107 D PFAM: adenylate cyclase; adenylate cyclase 5725740..5727107 Pseudomonas putida F1 5192988 YP_001270397.1 CDS Pput_5095 NC_009512.1 5727204 5727674 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(5727204..5727674) Pseudomonas putida F1 5192989 YP_001270398.1 CDS Pput_5096 NC_009512.1 5727801 5728106 D hypothetical protein 5727801..5728106 Pseudomonas putida F1 5190615 YP_001270399.1 CDS Pput_5097 NC_009512.1 5728291 5729964 D PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; type II secretion system protein E 5728291..5729964 Pseudomonas putida F1 5190616 YP_001270400.1 CDS Pput_5098 NC_009512.1 5730053 5730367 D TIGRFAM: conserverd hypothetical protein; hypothetical protein 5730053..5730367 Pseudomonas putida F1 5191402 YP_001270401.1 CDS Pput_5099 NC_009512.1 5730433 5733306 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(5730433..5733306) Pseudomonas putida F1 5191403 YP_001270402.1 CDS Pput_5100 NC_009512.1 5733503 5733886 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(5733503..5733886) Pseudomonas putida F1 5195495 YP_001270403.1 CDS gcvT NC_009512.1 5733938 5735020 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(5733938..5735020) Pseudomonas putida F1 5195496 YP_001270404.1 CDS Pput_5102 NC_009512.1 5735148 5736770 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5735148..5736770) Pseudomonas putida F1 5193313 YP_001270405.1 CDS Pput_5103 NC_009512.1 5736923 5737924 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(5736923..5737924) Pseudomonas putida F1 5193314 YP_001270406.1 CDS Pput_5104 NC_009512.1 5738118 5739341 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(5738118..5739341) Pseudomonas putida F1 5190683 YP_001270407.1 CDS Pput_5105 NC_009512.1 5739345 5739827 R hypothetical protein complement(5739345..5739827) Pseudomonas putida F1 5190684 YP_001270408.1 CDS Pput_5106 NC_009512.1 5739824 5741023 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(5739824..5741023) Pseudomonas putida F1 5191478 YP_001270409.1 CDS Pput_5107 NC_009512.1 5741020 5742354 R PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; peptidase M24 complement(5741020..5742354) Pseudomonas putida F1 5191479 YP_001270410.1 CDS Pput_5108 NC_009512.1 5742376 5742930 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(5742376..5742930) Pseudomonas putida F1 5194680 YP_001270411.1 CDS Pput_5109 NC_009512.1 5743076 5743294 D hypothetical protein 5743076..5743294 Pseudomonas putida F1 5194681 YP_001270412.1 CDS Pput_5110 NC_009512.1 5743291 5743611 D PFAM: protein of unknown function DUF710; hypothetical protein 5743291..5743611 Pseudomonas putida F1 5193805 YP_001270413.1 CDS Pput_5111 NC_009512.1 5743933 5744541 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5743933..5744541 Pseudomonas putida F1 5193806 YP_001270414.1 CDS Pput_5112 NC_009512.1 5744561 5744713 R hypothetical protein complement(5744561..5744713) Pseudomonas putida F1 5191484 YP_001270415.1 CDS Pput_5113 NC_009512.1 5744892 5745341 D PFAM: protein of unknown function DUF55; hypothetical protein 5744892..5745341 Pseudomonas putida F1 5191485 YP_001270416.1 CDS Pput_5114 NC_009512.1 5745437 5746396 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 5745437..5746396 Pseudomonas putida F1 5193450 YP_001270417.1 CDS Pput_5115 NC_009512.1 5746393 5749113 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter-like protein 5746393..5749113 Pseudomonas putida F1 5193451 YP_001270418.1 CDS Pput_5116 NC_009512.1 5749115 5750227 D PFAM: ABC-2 type transporter; ABC transporter 5749115..5750227 Pseudomonas putida F1 5193205 YP_001270419.1 CDS Pput_5117 NC_009512.1 5750408 5750851 R hypothetical protein complement(5750408..5750851) Pseudomonas putida F1 5193206 YP_001270420.1 CDS Pput_5118 NC_009512.1 5751006 5751452 R PFAM: flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(5751006..5751452) Pseudomonas putida F1 5190663 YP_001270421.1 CDS Pput_5119 NC_009512.1 5751568 5752545 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 5751568..5752545 Pseudomonas putida F1 5190664 YP_001270422.1 CDS Pput_5120 NC_009512.1 5752711 5753361 R PFAM: ChaC family protein; ChaC family protein complement(5752711..5753361) Pseudomonas putida F1 5193823 YP_001270423.1 CDS Pput_5121 NC_009512.1 5753608 5754576 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(5753608..5754576) Pseudomonas putida F1 5193824 YP_001270424.1 CDS Pput_5122 NC_009512.1 5754576 5756042 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; UbiD family decarboxylase complement(5754576..5756042) Pseudomonas putida F1 5191704 YP_001270425.1 CDS rho NC_009512.1 5756250 5757509 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(5756250..5757509) Pseudomonas putida F1 5191705 YP_001270426.1 CDS Pput_5124 NC_009512.1 5757737 5758066 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(5757737..5758066) Pseudomonas putida F1 5192100 YP_001270427.1 CDS Pput_5125 NC_009512.1 5758320 5759822 D PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 5758320..5759822 Pseudomonas putida F1 5192101 YP_001270428.1 CDS Pput_5126 NC_009512.1 5759809 5762052 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(5759809..5762052) Pseudomonas putida F1 5192744 YP_001270429.1 CDS Pput_5127 NC_009512.1 5762266 5762910 D hypothetical protein 5762266..5762910 Pseudomonas putida F1 5192745 YP_001270430.1 CDS Pput_5128 NC_009512.1 5762743 5764038 R sterol desaturase-like protein complement(5762743..5764038) Pseudomonas putida F1 5191972 YP_001270431.1 CDS Pput_5129 NC_009512.1 5764151 5764810 D PFAM: ThiJ/PfpI domain protein; isoprenoid biosynthesis protein with amidotransferase-like domain 5764151..5764810 Pseudomonas putida F1 5191973 YP_001270432.1 CDS Pput_5130 NC_009512.1 5765023 5765511 R PFAM: protein of unknown function DUF188; hypothetical protein complement(5765023..5765511) Pseudomonas putida F1 5195551 YP_001270433.1 CDS cyaA NC_009512.1 5765642 5768497 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5765642..5768497 Pseudomonas putida F1 5195552 YP_001270434.1 CDS Pput_5132 NC_009512.1 5768588 5768998 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(5768588..5768998) Pseudomonas putida F1 5192455 YP_001270435.1 CDS Pput_5133 NC_009512.1 5769145 5769369 R PFAM: protein of unknown function DUF1289; hypothetical protein complement(5769145..5769369) Pseudomonas putida F1 5192456 YP_001270436.1 CDS cyaY NC_009512.1 5769371 5769703 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(5769371..5769703) Pseudomonas putida F1 5191214 YP_001270437.1 CDS Pput_5135 NC_009512.1 5769943 5770161 D hypothetical protein 5769943..5770161 Pseudomonas putida F1 5191215 YP_001270438.1 CDS Pput_5136 NC_009512.1 5770171 5771418 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 5770171..5771418 Pseudomonas putida F1 5193715 YP_001270439.1 CDS dapF NC_009512.1 5771423 5772253 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5771423..5772253 Pseudomonas putida F1 5193716 YP_001270440.1 CDS Pput_5138 NC_009512.1 5772267 5772977 D PFAM: protein of unknown function DUF484; hypothetical protein 5772267..5772977 Pseudomonas putida F1 5191666 YP_001270441.1 CDS xerC NC_009512.1 5772977 5773876 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5772977..5773876 Pseudomonas putida F1 5191667 YP_001270442.1 CDS Pput_5140 NC_009512.1 5773873 5774568 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 5773873..5774568 Pseudomonas putida F1 5195019 YP_001270443.1 CDS Pput_5141 NC_009512.1 5774748 5775077 R hypothetical protein complement(5774748..5775077) Pseudomonas putida F1 5195020 YP_001270444.1 CDS Pput_5142 NC_009512.1 5775507 5776838 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter complement(5775507..5776838) Pseudomonas putida F1 5195388 YP_001270445.1 CDS Pput_5143 NC_009512.1 5776886 5777224 R PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(5776886..5777224) Pseudomonas putida F1 5195389 YP_001270446.1 CDS Pput_5144 NC_009512.1 5777608 5778009 D PFAM: protein of unknown function DUF526; hypothetical protein 5777608..5778009 Pseudomonas putida F1 5192796 YP_001270447.1 CDS Pput_5145 NC_009512.1 5778010 5778363 D hypothetical protein 5778010..5778363 Pseudomonas putida F1 5192797 YP_001270448.1 CDS Pput_5146 NC_009512.1 5778317 5780392 R PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(5778317..5780392) Pseudomonas putida F1 5195433 YP_001270449.1 CDS Pput_5147 NC_009512.1 5780649 5781035 D ATPase-like protein 5780649..5781035 Pseudomonas putida F1 5195434 YP_001270450.1 CDS Pput_5148 NC_009512.1 5781032 5781388 D hypothetical protein 5781032..5781388 Pseudomonas putida F1 5190431 YP_001270451.1 CDS Pput_5149 NC_009512.1 5782150 5783640 D TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 5782150..5783640 Pseudomonas putida F1 5190432 YP_001270452.1 CDS Pput_5150 NC_009512.1 5783708 5784076 R PFAM: response regulator receiver; response regulator receiver protein complement(5783708..5784076) Pseudomonas putida F1 5192846 YP_001270453.1 CDS Pput_5151 NC_009512.1 5784073 5785065 R PFAM: regulatory protein, LuxR; response regulator receiver; transcriptional regulator domain protein; Sigma-70, region 4 type 2; response regulator receiver protein complement(5784073..5785065) Pseudomonas putida F1 5192847 YP_001270454.1 CDS Pput_5152 NC_009512.1 5785305 5790353 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: serine/threonine protein kinase; ATPase domain-containing protein 5785305..5790353 Pseudomonas putida F1 5193065 YP_001270455.1 CDS Pput_5153 NC_009512.1 5790450 5791076 R PFAM: isochorismatase hydrolase; isochorismatase hydrolase complement(5790450..5791076) Pseudomonas putida F1 5193066 YP_001270456.1 CDS Pput_5154 NC_009512.1 5791150 5791512 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(5791150..5791512) Pseudomonas putida F1 5190209 YP_001270457.1 CDS Pput_5155 NC_009512.1 5791633 5792679 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 5791633..5792679 Pseudomonas putida F1 5190210 YP_001270458.1 CDS Pput_5156 NC_009512.1 5792908 5794695 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; potassium efflux system protein 5792908..5794695 Pseudomonas putida F1 5190635 YP_001270459.1 CDS Pput_5157 NC_009512.1 5795383 5795676 D hypothetical protein 5795383..5795676 Pseudomonas putida F1 5190636 YP_001270460.1 CDS Pput_5158 NC_009512.1 5795853 5796482 R PFAM: isochorismatase hydrolase; isochorismatase hydrolase complement(5795853..5796482) Pseudomonas putida F1 5192864 YP_001270461.1 CDS Pput_5159 NC_009512.1 5796719 5797630 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5796719..5797630 Pseudomonas putida F1 5192865 YP_001270462.1 CDS Pput_5160 NC_009512.1 5797838 5799100 D PFAM: outer membrane porin; outer membrane porin 5797838..5799100 Pseudomonas putida F1 5191903 YP_001270463.1 CDS Pput_5161 NC_009512.1 5799102 5800700 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; hypothetical protein 5799102..5800700 Pseudomonas putida F1 5191904 YP_001270464.1 CDS Pput_5162 NC_009512.1 5800828 5802810 R PFAM: Amidohydrolase 3; amidohydrolase 3 complement(5800828..5802810) Pseudomonas putida F1 5191464 YP_001270465.1 CDS Pput_5163 NC_009512.1 5803010 5803828 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(5803010..5803828) Pseudomonas putida F1 5191465 YP_001270466.1 CDS Pput_5164 NC_009512.1 5803869 5804177 R hypothetical protein complement(5803869..5804177) Pseudomonas putida F1 5192683 YP_001270467.1 CDS Pput_5165 NC_009512.1 5804295 5804924 R PFAM: isochorismatase hydrolase; isochorismatase hydrolase complement(5804295..5804924) Pseudomonas putida F1 5192684 YP_001270468.1 CDS Pput_5166 NC_009512.1 5805246 5806673 D PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; cyclic nucleotide-regulated small mechanosensitive ion channel 5805246..5806673 Pseudomonas putida F1 5193228 YP_001270469.1 CDS Pput_5167 NC_009512.1 5806782 5808218 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(5806782..5808218) Pseudomonas putida F1 5193229 YP_001270470.1 CDS Pput_5168 NC_009512.1 5808226 5809716 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(5808226..5809716) Pseudomonas putida F1 5191362 YP_001270471.1 CDS Pput_5169 NC_009512.1 5809852 5810742 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5809852..5810742 Pseudomonas putida F1 5191363 YP_001270472.1 CDS Pput_5170 NC_009512.1 5810946 5812340 D PFAM: protein of unknown function DUF1338; hypothetical protein 5810946..5812340 Pseudomonas putida F1 5191010 YP_001270473.1 CDS Pput_5171 NC_009512.1 5812393 5813319 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5812393..5813319) Pseudomonas putida F1 5191011 YP_001270474.1 CDS Pput_5172 NC_009512.1 5813477 5814865 D functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 5813477..5814865 Pseudomonas putida F1 5193950 YP_001270475.1 CDS Pput_5173 NC_009512.1 5815049 5816716 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase complement(5815049..5816716) Pseudomonas putida F1 5193951 YP_001270476.1 CDS Pput_5174 NC_009512.1 5817014 5819023 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; ATP-dependent DNA helicase Rep 5817014..5819023 Pseudomonas putida F1 5194098 YP_001270477.1 CDS Pput_5175 NC_009512.1 5819088 5819660 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 5819088..5819660 Pseudomonas putida F1 5194099 YP_001270478.1 CDS Pput_5176 NC_009512.1 5819771 5821630 R acetyl-CoA hydrolase-like protein complement(5819771..5821630) Pseudomonas putida F1 5194364 YP_001270479.1 CDS Pput_5177 NC_009512.1 5821858 5822280 R cytochrome c5 complement(5821858..5822280) Pseudomonas putida F1 5194365 YP_001270480.1 CDS Pput_5178 NC_009512.1 5822417 5823016 R PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator complement(5822417..5823016) Pseudomonas putida F1 5194688 YP_001270481.1 CDS dadX NC_009512.1 5823073 5824146 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(5823073..5824146) Pseudomonas putida F1 5194689 YP_001270482.1 CDS Pput_5180 NC_009512.1 5824291 5825595 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(5824291..5825595) Pseudomonas putida F1 5194797 YP_001270483.1 CDS Pput_5181 NC_009512.1 5825752 5826240 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 5825752..5826240 Pseudomonas putida F1 5194798 YP_001270484.1 CDS Pput_5182 NC_009512.1 5826243 5826596 R PFAM: protein of unknown function UPF0153; hypothetical protein complement(5826243..5826596) Pseudomonas putida F1 5195263 YP_001270485.1 CDS Pput_5183 NC_009512.1 5826741 5828033 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 5826741..5828033 Pseudomonas putida F1 5195264 YP_001270486.1 CDS Pput_5184 NC_009512.1 5828234 5828464 R hypothetical protein complement(5828234..5828464) Pseudomonas putida F1 5195037 YP_001270487.1 CDS Pput_5185 NC_009512.1 5828583 5830073 D PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 5828583..5830073 Pseudomonas putida F1 5195038 YP_001270488.1 CDS Pput_5186 NC_009512.1 5830134 5831687 D PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 5830134..5831687 Pseudomonas putida F1 5192568 YP_001270489.1 CDS Pput_5187 NC_009512.1 5831724 5832863 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5831724..5832863) Pseudomonas putida F1 5192569 YP_001270490.1 CDS Pput_5188 NC_009512.1 5832974 5834554 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(5832974..5834554) Pseudomonas putida F1 5190262 YP_001270491.1 CDS Pput_5189 NC_009512.1 5834664 5835023 D PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 5834664..5835023 Pseudomonas putida F1 5190263 YP_001270492.1 CDS Pput_5190 NC_009512.1 5835050 5835310 D hypothetical protein 5835050..5835310 Pseudomonas putida F1 5192962 YP_001270493.1 CDS rpmG NC_009512.1 5835378 5835533 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(5835378..5835533) Pseudomonas putida F1 5192963 YP_001270494.1 CDS rpmB NC_009512.1 5835545 5835781 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(5835545..5835781) Pseudomonas putida F1 5195567 YP_001270495.1 CDS Pput_5193 NC_009512.1 5836143 5837732 D PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 5836143..5837732 Pseudomonas putida F1 5195568 YP_001270496.1 CDS radC NC_009512.1 5837867 5838574 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(5837867..5838574) Pseudomonas putida F1 5194753 YP_001270497.1 CDS Pput_5195 NC_009512.1 5838608 5839885 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5838608..5839885 Pseudomonas putida F1 5194754 YP_001270498.1 CDS dut NC_009512.1 5839891 5840346 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 5839891..5840346 Pseudomonas putida F1 5195168 YP_001270499.1 CDS Pput_5197 NC_009512.1 5840458 5841858 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase 5840458..5841858 Pseudomonas putida F1 5195169 YP_001270500.1 CDS Pput_5198 NC_009512.1 5841889 5842794 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 5841889..5842794 Pseudomonas putida F1 5192472 YP_001270501.1 CDS pyrE NC_009512.1 5842954 5843595 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(5842954..5843595) Pseudomonas putida F1 5192473 YP_001270502.1 CDS Pput_5200 NC_009512.1 5843676 5844455 D TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 5843676..5844455 Pseudomonas putida F1 5190778 YP_001270503.1 CDS Pput_5201 NC_009512.1 5844489 5844857 R hypothetical protein complement(5844489..5844857) Pseudomonas putida F1 5190779 YP_001270504.1 CDS rph NC_009512.1 5844881 5845603 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(5844881..5845603) Pseudomonas putida F1 5192830 YP_001270505.1 CDS Pput_5203 NC_009512.1 5845832 5846695 D PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; hypothetical protein 5845832..5846695 Pseudomonas putida F1 5192831 YP_001270506.1 CDS gmk NC_009512.1 5846709 5847329 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 5846709..5847329 Pseudomonas putida F1 5192970 YP_001270508.1 CDS Pput_5206 NC_009512.1 5847858 5849465 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(5847858..5849465) Pseudomonas putida F1 5193494 YP_001270509.1 CDS Pput_5207 NC_009512.1 5849519 5850286 R PFAM: peptidase C26; peptidase C26 complement(5849519..5850286) Pseudomonas putida F1 5193495 YP_001270510.1 CDS Pput_5208 NC_009512.1 5850291 5851673 R PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase complement(5850291..5851673) Pseudomonas putida F1 5195561 YP_001270511.1 CDS Pput_5209 NC_009512.1 5851702 5852751 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5851702..5852751 Pseudomonas putida F1 5195562 YP_001270512.1 CDS rpoZ NC_009512.1 5852992 5853255 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 5852992..5853255 Pseudomonas putida F1 5193910 YP_001270513.1 CDS Pput_5211 NC_009512.1 5853315 5855423 D TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 5853315..5855423 Pseudomonas putida F1 5193911 YP_001270514.1 CDS Pput_5212 NC_009512.1 5855447 5855827 D TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; putative endoribonuclease L-PSP 5855447..5855827 Pseudomonas putida F1 5193679 YP_001270515.1 CDS Pput_5213 NC_009512.1 5855884 5856615 D hypothetical protein 5855884..5856615 Pseudomonas putida F1 5193680 YP_001270516.1 CDS Pput_5214 NC_009512.1 5856785 5857642 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(5856785..5857642) Pseudomonas putida F1 5190982 YP_001270517.1 CDS Pput_5215 NC_009512.1 5857832 5858806 D TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel; TonB-system energizer ExbB type-1 5857832..5858806 Pseudomonas putida F1 5190983 YP_001270518.1 CDS Pput_5216 NC_009512.1 5858810 5859238 D membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 5858810..5859238 Pseudomonas putida F1 5193667 YP_001270519.1 CDS Pput_5217 NC_009512.1 5859235 5859966 D TIGRFAM: TonB family protein; TonB family protein 5859235..5859966 Pseudomonas putida F1 5193668 YP_001270520.1 CDS Pput_5218 NC_009512.1 5860061 5860987 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5860061..5860987 Pseudomonas putida F1 5190204 YP_001270521.1 CDS Pput_5219 NC_009512.1 5860991 5863069 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 5860991..5863069 Pseudomonas putida F1 5190205 YP_001270522.1 CDS Pput_5220 NC_009512.1 5863148 5864551 D PFAM: Metal-dependent hydrolase HDOD; putative signal transduction protein 5863148..5864551 Pseudomonas putida F1 5193876 YP_001270523.1 CDS Pput_5221 NC_009512.1 5864681 5865055 R hypothetical protein complement(5864681..5865055) Pseudomonas putida F1 5193877 YP_001270524.1 CDS Pput_5222 NC_009512.1 5865204 5865503 R PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(5865204..5865503) Pseudomonas putida F1 5193781 YP_001270525.1 CDS Pput_5223 NC_009512.1 5865691 5866839 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5865691..5866839) Pseudomonas putida F1 5193782 YP_001270526.1 CDS Pput_5224 NC_009512.1 5866856 5867023 R PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(5866856..5867023) Pseudomonas putida F1 5192411 YP_001270527.1 CDS Pput_5225 NC_009512.1 5867249 5867806 D PFAM: Chorismate lyase; chorismate lyase 5867249..5867806 Pseudomonas putida F1 5192412 YP_001270528.1 CDS ubiA NC_009512.1 5867806 5868696 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 5867806..5868696 Pseudomonas putida F1 5195181 YP_001270529.1 CDS Pput_5227 NC_009512.1 5868817 5869188 R PFAM: Secreted repeat of unknown function; hypothetical protein complement(5868817..5869188) Pseudomonas putida F1 5195182 YP_001270530.1 CDS Pput_5228 NC_009512.1 5869361 5870050 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 5869361..5870050 Pseudomonas putida F1 5193243 YP_001270531.1 CDS Pput_5229 NC_009512.1 5870099 5871406 D TIGRFAM: Phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; PAS/PAC sensor signal transduction histidine kinase 5870099..5871406 Pseudomonas putida F1 5193244 YP_001270532.1 CDS Pput_5230 NC_009512.1 5871580 5872920 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 5871580..5872920 Pseudomonas putida F1 5192002 YP_001270533.1 CDS Pput_5231 NC_009512.1 5873041 5873937 R PFAM: peptidase M23B; peptidase M23B complement(5873041..5873937) Pseudomonas putida F1 5192003 YP_001270534.1 CDS Pput_5232 NC_009512.1 5874084 5874968 R PFAM: response regulator receiver; response regulator receiver protein complement(5874084..5874968) Pseudomonas putida F1 5194336 YP_001270535.1 CDS Pput_5233 NC_009512.1 5875132 5875902 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU complement(5875132..5875902) Pseudomonas putida F1 5194337 YP_001270536.1 CDS Pput_5234 NC_009512.1 5876004 5876837 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5876004..5876837) Pseudomonas putida F1 5194425 YP_001270537.1 CDS Pput_5235 NC_009512.1 5876910 5878580 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease complement(5876910..5878580) Pseudomonas putida F1 5194426 YP_001270538.1 CDS Pput_5236 NC_009512.1 5878598 5880886 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5878598..5880886) Pseudomonas putida F1 5194824 YP_001270539.1 CDS Pput_5237 NC_009512.1 5881025 5882023 R TIGRFAM: phosphate binding protein; phosphate binding protein complement(5881025..5882023) Pseudomonas putida F1 5194825 YP_001270540.1 CDS Pput_5238 NC_009512.1 5882260 5883549 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5882260..5883549) Pseudomonas putida F1 5194996 YP_001270541.1 CDS Pput_5239 NC_009512.1 5883911 5884309 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 5883911..5884309 Pseudomonas putida F1 5194997 YP_001270542.1 CDS Pput_5240 NC_009512.1 5884381 5885277 D PFAM: Aldose 1-epimerase; aldose 1-epimerase 5884381..5885277 Pseudomonas putida F1 5194755 YP_001270543.1 CDS Pput_5241 NC_009512.1 5885399 5885932 R hypothetical protein complement(5885399..5885932) Pseudomonas putida F1 5194756 YP_001270544.1 CDS Pput_5242 NC_009512.1 5885981 5886226 R PFAM: Transglycosylase-associated protein; transglycosylase-associated protein complement(5885981..5886226) Pseudomonas putida F1 5190566 YP_001270545.1 CDS Pput_5243 NC_009512.1 5886335 5887417 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase complement(5886335..5887417) Pseudomonas putida F1 5190567 YP_001270546.1 CDS Pput_5244 NC_009512.1 5887428 5887919 R TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(5887428..5887919) Pseudomonas putida F1 5192659 YP_001270547.1 CDS Pput_5245 NC_009512.1 5888189 5888815 D hypothetical protein 5888189..5888815 Pseudomonas putida F1 5192660 YP_001270548.1 CDS Pput_5246 NC_009512.1 5888807 5889733 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(5888807..5889733) Pseudomonas putida F1 5190898 YP_001270549.1 CDS aspA NC_009512.1 5889895 5891331 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 5889895..5891331 Pseudomonas putida F1 5190899 YP_001270550.1 CDS Pput_5248 NC_009512.1 5891562 5892554 D PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 5891562..5892554 Pseudomonas putida F1 5193167 YP_001270551.1 CDS Pput_5249 NC_009512.1 5892851 5893894 D PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 5892851..5893894 Pseudomonas putida F1 5193168 YP_001270552.1 CDS Pput_5250 NC_009512.1 5893894 5894997 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 5893894..5894997 Pseudomonas putida F1 5192402 YP_001270553.1 CDS Pput_5251 NC_009512.1 5895029 5896558 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(5895029..5896558) Pseudomonas putida F1 5192403 YP_001270554.1 CDS Pput_5252 NC_009512.1 5896648 5897277 D PFAM: Negative transcriptional regulator; FMN-binding negative transcriptional regulator 5896648..5897277 Pseudomonas putida F1 5193328 YP_001270555.1 CDS Pput_5253 NC_009512.1 5897289 5897735 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5897289..5897735 Pseudomonas putida F1 5193329 YP_001270556.1 CDS Pput_5254 NC_009512.1 5897743 5898414 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5897743..5898414 Pseudomonas putida F1 5193456 YP_001270557.1 CDS Pput_5255 NC_009512.1 5898576 5900384 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(5898576..5900384) Pseudomonas putida F1 5193457 YP_001270558.1 CDS Pput_5256 NC_009512.1 5900396 5901811 R biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A complement(5900396..5901811) Pseudomonas putida F1 5193189 YP_001270559.1 CDS Pput_5257 NC_009512.1 5902001 5902963 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5902001..5902963 Pseudomonas putida F1 5193190 YP_001270560.1 CDS Pput_5258 NC_009512.1 5903336 5904202 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator complement(5903336..5904202) Pseudomonas putida F1 5193266 YP_001270561.1 CDS Pput_5259 NC_009512.1 5904306 5905748 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 5904306..5905748 Pseudomonas putida F1 5193267 YP_001270562.1 CDS uvrD NC_009512.1 5905963 5908149 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 5905963..5908149 Pseudomonas putida F1 5193614 YP_001270563.1 CDS Pput_5261 NC_009512.1 5908241 5909134 D PFAM: import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 5908241..5909134 Pseudomonas putida F1 5193615 YP_001270564.1 CDS Pput_5262 NC_009512.1 5909248 5909655 D hypothetical protein 5909248..5909655 Pseudomonas putida F1 5190495 YP_001270565.1 CDS Pput_5263 NC_009512.1 5909818 5911578 R PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(5909818..5911578) Pseudomonas putida F1 5190496 YP_001270566.1 CDS Pput_5264 NC_009512.1 5911918 5912403 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 5911918..5912403 Pseudomonas putida F1 5193768 YP_001270567.1 CDS Pput_5265 NC_009512.1 5912400 5913272 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(5912400..5913272) Pseudomonas putida F1 5193769 YP_001270568.1 CDS Pput_5266 NC_009512.1 5913393 5913785 D hypothetical protein 5913393..5913785 Pseudomonas putida F1 5191456 YP_001270569.1 CDS Pput_5267 NC_009512.1 5913786 5914757 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K complement(5913786..5914757) Pseudomonas putida F1 5191457 YP_001270570.1 CDS Pput_5268 NC_009512.1 5914798 5915424 R PFAM: Protein of unknown function DUF1826; hypothetical protein complement(5914798..5915424) Pseudomonas putida F1 5195501 YP_001270571.1 CDS Pput_5269 NC_009512.1 5915421 5916629 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K complement(5915421..5916629) Pseudomonas putida F1 5195502 YP_001270572.1 CDS Pput_5270 NC_009512.1 5916744 5917124 D hypothetical protein 5916744..5917124 Pseudomonas putida F1 5195311 YP_001270573.1 CDS Pput_5271 NC_009512.1 5917396 5917923 R hypothetical protein complement(5917396..5917923) Pseudomonas putida F1 5195312 YP_001270574.1 CDS cls NC_009512.1 5918056 5919495 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 5918056..5919495 Pseudomonas putida F1 5193520 YP_001270575.1 CDS Pput_5273 NC_009512.1 5919568 5920824 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase complement(5919568..5920824) Pseudomonas putida F1 5193521 YP_001270576.1 CDS Pput_5274 NC_009512.1 5920960 5922360 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 5920960..5922360 Pseudomonas putida F1 5191724 YP_001270577.1 CDS Pput_5275 NC_009512.1 5922472 5923479 R PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region complement(5922472..5923479) Pseudomonas putida F1 5191725 YP_001270578.1 CDS Pput_5276 NC_009512.1 5923476 5924324 R PFAM: Transketolase domain protein; transketolase domain-containing protein complement(5923476..5924324) Pseudomonas putida F1 5191450 YP_001270579.1 CDS Pput_5277 NC_009512.1 5924343 5925644 R PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5924343..5925644) Pseudomonas putida F1 5191451 YP_001270580.1 CDS Pput_5278 NC_009512.1 5925712 5926461 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(5925712..5926461) Pseudomonas putida F1 5192149 YP_001270581.1 CDS Pput_5279 NC_009512.1 5926657 5927574 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5926657..5927574 Pseudomonas putida F1 5192150 YP_001270582.1 CDS Pput_5280 NC_009512.1 5927821 5928444 D PFAM: Methyltransferase type 12; type 12 methyltransferase 5927821..5928444 Pseudomonas putida F1 5193925 YP_001270583.1 CDS Pput_5281 NC_009512.1 5928954 5930195 R PFAM: outer membrane porin; outer membrane porin complement(5928954..5930195) Pseudomonas putida F1 5193926 YP_001270584.1 CDS Pput_5282 NC_009512.1 5930410 5931339 R PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(5930410..5931339) Pseudomonas putida F1 5191366 YP_001270585.1 CDS Pput_5283 NC_009512.1 5931463 5932854 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(5931463..5932854) Pseudomonas putida F1 5191367 YP_001270586.1 CDS Pput_5284 NC_009512.1 5933469 5933681 R hypothetical protein complement(5933469..5933681) Pseudomonas putida F1 5193324 YP_001270587.1 CDS Pput_5285 NC_009512.1 5933713 5933874 R hypothetical protein complement(5933713..5933874) Pseudomonas putida F1 5193325 YP_001270588.1 CDS Pput_5286 NC_009512.1 5934190 5934912 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 5934190..5934912 Pseudomonas putida F1 5194490 YP_001270589.1 CDS Pput_5287 NC_009512.1 5935032 5936309 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; histidine kinase 5935032..5936309 Pseudomonas putida F1 5194491 YP_001270590.1 CDS Pput_5288 NC_009512.1 5936418 5937254 D PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; regulatory protein IclR 5936418..5937254 Pseudomonas putida F1 5190907 YP_001270591.1 CDS Pput_5289 NC_009512.1 5937708 5938403 D TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 5937708..5938403 Pseudomonas putida F1 5190908 YP_001270592.1 CDS Pput_5290 NC_009512.1 5938412 5939053 D TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 5938412..5939053 Pseudomonas putida F1 5194894 YP_001270593.1 CDS Pput_5291 NC_009512.1 5939399 5941234 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5939399..5941234) Pseudomonas putida F1 5194895 YP_001270594.1 CDS Pput_5292 NC_009512.1 5941238 5942014 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator complement(5941238..5942014) Pseudomonas putida F1 5193803 YP_001270595.1 CDS Pput_5293 NC_009512.1 5942205 5943572 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase complement(5942205..5943572) Pseudomonas putida F1 5193804 YP_001270596.1 CDS atpC NC_009512.1 5943691 5944110 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5943691..5944110) Pseudomonas putida F1 5191053 YP_001270597.1 CDS Pput_5295 NC_009512.1 5944154 5945530 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5944154..5945530) Pseudomonas putida F1 5191054 YP_001270598.1 CDS Pput_5296 NC_009512.1 5945558 5946418 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5945558..5946418) Pseudomonas putida F1 5193574 YP_001270599.1 CDS Pput_5297 NC_009512.1 5946467 5948011 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5946467..5948011) Pseudomonas putida F1 5193575 YP_001270600.1 CDS Pput_5298 NC_009512.1 5948033 5948569 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5948033..5948569) Pseudomonas putida F1 5190621 YP_001270601.1 CDS Pput_5299 NC_009512.1 5948582 5949052 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5948582..5949052) Pseudomonas putida F1 5190622 YP_001270602.1 CDS Pput_5300 NC_009512.1 5949109 5949366 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5949109..5949366) Pseudomonas putida F1 5195265 YP_001270603.1 CDS Pput_5301 NC_009512.1 5949511 5950380 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5949511..5950380) Pseudomonas putida F1 5195266 YP_001270604.1 CDS Pput_5302 NC_009512.1 5950397 5950804 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(5950397..5950804) Pseudomonas putida F1 5190248 YP_001270605.1 CDS Pput_5303 NC_009512.1 5950954 5951826 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; parB-like partition protein complement(5950954..5951826) Pseudomonas putida F1 5190249 YP_001270606.1 CDS Pput_5304 NC_009512.1 5951836 5952627 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(5951836..5952627) Pseudomonas putida F1 5193719 YP_001270607.1 CDS gidB NC_009512.1 5952646 5953296 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5952646..5953296) Pseudomonas putida F1 5193720 YP_001270608.1 CDS Pput_5306 NC_009512.1 5953293 5955185 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5953293..5955185) Pseudomonas putida F1 5190199 YP_001270609.1 CDS Pput_5307 NC_009512.1 5955512 5955742 R hypothetical protein complement(5955512..5955742) Pseudomonas putida F1 5190200 YP_001270610.1 CDS trmE NC_009512.1 5955819 5957189 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5955819..5957189) Pseudomonas putida F1 5193284 YP_001270611.1 CDS Pput_5309 NC_009512.1 5957278 5958960 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(5957278..5958960) Pseudomonas putida F1 5193285 YP_001270612.1 CDS Pput_5310 NC_009512.1 5958963 5959208 R PFAM: protein of unknown function DUF37; hypothetical protein complement(5958963..5959208) Pseudomonas putida F1 5190980 YP_001270613.1 CDS rnpA NC_009512.1 5959201 5959605 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(5959201..5959605) Pseudomonas putida F1 5190981 Pput_R0005 tRNA Pput_R0005 NC_009512.1 265864 265940 R tRNA-Arg complement(265864..265940) Pseudomonas putida F1 5194838 Pput_R0006 tRNA Pput_R0006 NC_009512.1 338834 338909 R tRNA-Thr complement(338834..338909) Pseudomonas putida F1 5194196 Pput_R0007 tRNA Pput_R0007 NC_009512.1 348720 348795 R tRNA-Phe complement(348720..348795) Pseudomonas putida F1 5191386 Pput_R0008 tRNA Pput_R0008 NC_009512.1 482039 482115 R tRNA-Met complement(482039..482115) Pseudomonas putida F1 5194296 Pput_R0010 tRNA Pput_R0010 NC_009512.1 541451 541527 D tRNA-Ile 541451..541527 Pseudomonas putida F1 5194772 Pput_R0011 tRNA Pput_R0011 NC_009512.1 541534 541609 D tRNA-Ala 541534..541609 Pseudomonas putida F1 5194415 Pput_R0014 tRNA Pput_R0014 NC_009512.1 547462 547545 D tRNA-Tyr 547462..547545 Pseudomonas putida F1 5190396 Pput_R0015 tRNA Pput_R0015 NC_009512.1 547570 547643 D tRNA-Gly 547570..547643 Pseudomonas putida F1 5190708 Pput_R0016 tRNA Pput_R0016 NC_009512.1 547673 547748 D tRNA-Thr 547673..547748 Pseudomonas putida F1 5190447 Pput_R0017 tRNA Pput_R0017 NC_009512.1 549075 549150 D tRNA-Trp 549075..549150 Pseudomonas putida F1 5191258 Pput_R0021 tRNA Pput_R0021 NC_009512.1 752653 752728 D tRNA-Asn 752653..752728 Pseudomonas putida F1 5190576 Pput_R0022 tRNA Pput_R0022 NC_009512.1 752733 752809 D tRNA-Pro 752733..752809 Pseudomonas putida F1 5190523 Pput_R0023 tRNA Pput_R0023 NC_009512.1 752815 752890 D tRNA-Lys 752815..752890 Pseudomonas putida F1 5192860 Pput_R0024 tRNA Pput_R0024 NC_009512.1 752937 753013 D tRNA-Pro 752937..753013 Pseudomonas putida F1 5192043 Pput_R0025 tRNA Pput_R0025 NC_009512.1 753019 753094 D tRNA-Lys 753019..753094 Pseudomonas putida F1 5190173 Pput_R0026 tRNA Pput_R0026 NC_009512.1 760664 760739 D tRNA-Thr 760664..760739 Pseudomonas putida F1 5191067 Pput_R0027 tRNA Pput_R0027 NC_009512.1 768920 768991 R tRNA-OTHER complement(768920..768991) Pseudomonas putida F1 5194446 Pput_R0028 tRNA Pput_R0028 NC_009512.1 820486 820562 R tRNA-Met complement(820486..820562) Pseudomonas putida F1 5194366 Pput_R0029 tRNA Pput_R0029 NC_009512.1 848700 848774 R tRNA-Gln complement(848700..848774) Pseudomonas putida F1 5195391 Pput_R0030 tRNA Pput_R0030 NC_009512.1 983562 983646 R tRNA-Leu complement(983562..983646) Pseudomonas putida F1 5193055 Pput_R0032 tRNA Pput_R0032 NC_009512.1 1344427 1344503 D tRNA-Ile 1344427..1344503 Pseudomonas putida F1 5192237 Pput_R0033 tRNA Pput_R0033 NC_009512.1 1344510 1344585 D tRNA-Ala 1344510..1344585 Pseudomonas putida F1 5193419 Pput_R0036 tRNA Pput_R0036 NC_009512.1 1398184 1398260 R tRNA-Met complement(1398184..1398260) Pseudomonas putida F1 5194831 Pput_R0037 tRNA Pput_R0037 NC_009512.1 1398395 1398471 R tRNA-Met complement(1398395..1398471) Pseudomonas putida F1 5194940 Pput_R0038 tRNA Pput_R0038 NC_009512.1 1398606 1398682 R tRNA-Met complement(1398606..1398682) Pseudomonas putida F1 5191976 Pput_R0039 tRNA Pput_R0039 NC_009512.1 1420230 1420305 D tRNA-Lys 1420230..1420305 Pseudomonas putida F1 5192658 Pput_R0040 tRNA Pput_R0040 NC_009512.1 1437688 1437777 D tRNA-Ser 1437688..1437777 Pseudomonas putida F1 5191915 Pput_R0041 tRNA Pput_R0041 NC_009512.1 1620544 1620634 D tRNA-Ser 1620544..1620634 Pseudomonas putida F1 5195302 Pput_R0042 tRNA Pput_R0042 NC_009512.1 1620741 1620817 D tRNA-Arg 1620741..1620817 Pseudomonas putida F1 5190701 Pput_R0043 tRNA Pput_R0043 NC_009512.1 1620890 1620966 D tRNA-Arg 1620890..1620966 Pseudomonas putida F1 5195129 Pput_R0044 tRNA Pput_R0044 NC_009512.1 1621041 1621117 D tRNA-Arg 1621041..1621117 Pseudomonas putida F1 5195167 Pput_R0045 tRNA Pput_R0045 NC_009512.1 1621191 1621267 D tRNA-Arg 1621191..1621267 Pseudomonas putida F1 5190279 Pput_R0046 tRNA Pput_R0046 NC_009512.1 1624589 1624665 D tRNA-Arg 1624589..1624665 Pseudomonas putida F1 5190752 Pput_R0048 tRNA Pput_R0048 NC_009512.1 2022122 2022197 D tRNA-Gly 2022122..2022197 Pseudomonas putida F1 5190285 Pput_R0049 tRNA Pput_R0049 NC_009512.1 2113660 2113747 D tRNA-Ser 2113660..2113747 Pseudomonas putida F1 5195016 Pput_R0050 tRNA Pput_R0050 NC_009512.1 2188877 2188950 D tRNA-Cys 2188877..2188950 Pseudomonas putida F1 5193730 Pput_R0051 tRNA Pput_R0051 NC_009512.1 2206571 2206655 R tRNA-Leu complement(2206571..2206655) Pseudomonas putida F1 5192981 Pput_R0052 tRNA Pput_R0052 NC_009512.1 3630810 3630886 R tRNA-Pro complement(3630810..3630886) Pseudomonas putida F1 5191656 Pput_R0053 tRNA Pput_R0053 NC_009512.1 3654686 3654762 R tRNA-Val complement(3654686..3654762) Pseudomonas putida F1 5191757 Pput_R0054 tRNA Pput_R0054 NC_009512.1 3654935 3655011 R tRNA-Val complement(3654935..3655011) Pseudomonas putida F1 5193620 Pput_R0055 tRNA Pput_R0055 NC_009512.1 3766514 3766588 R tRNA-Gln complement(3766514..3766588) Pseudomonas putida F1 5190589 Pput_R0056 tRNA Pput_R0056 NC_009512.1 3877213 3877288 R tRNA-His complement(3877213..3877288) Pseudomonas putida F1 5190185 Pput_R0057 tRNA Pput_R0057 NC_009512.1 3877325 3877409 R tRNA-Leu complement(3877325..3877409) Pseudomonas putida F1 5191397 Pput_R0058 tRNA Pput_R0058 NC_009512.1 3877462 3877537 R tRNA-His complement(3877462..3877537) Pseudomonas putida F1 5191644 Pput_R0059 tRNA Pput_R0059 NC_009512.1 3877579 3877655 R tRNA-Arg complement(3877579..3877655) Pseudomonas putida F1 5190875 Pput_R0062 tRNA Pput_R0062 NC_009512.1 3912980 3913055 R tRNA-Ala complement(3912980..3913055) Pseudomonas putida F1 5194925 Pput_R0063 tRNA Pput_R0063 NC_009512.1 3913080 3913156 R tRNA-Ile complement(3913080..3913156) Pseudomonas putida F1 5191373 Pput_R0065 tRNA Pput_R0065 NC_009512.1 4043269 4043345 D tRNA-Pro 4043269..4043345 Pseudomonas putida F1 5190840 Pput_R0066 tRNA Pput_R0066 NC_009512.1 4213351 4213427 R tRNA-Asp complement(4213351..4213427) Pseudomonas putida F1 5190501 Pput_R0067 tRNA Pput_R0067 NC_009512.1 4213569 4213645 R tRNA-Asp complement(4213569..4213645) Pseudomonas putida F1 5194429 Pput_R0068 tRNA Pput_R0068 NC_009512.1 4213745 4213821 R tRNA-Asp complement(4213745..4213821) Pseudomonas putida F1 5192404 Pput_R0069 tRNA Pput_R0069 NC_009512.1 4213887 4213962 R tRNA-Val complement(4213887..4213962) Pseudomonas putida F1 5194345 Pput_R0070 tRNA Pput_R0070 NC_009512.1 4242338 4242413 R tRNA-Glu complement(4242338..4242413) Pseudomonas putida F1 5195224 Pput_R0071 tRNA Pput_R0071 NC_009512.1 4242456 4242531 R tRNA-Ala complement(4242456..4242531) Pseudomonas putida F1 5194867 Pput_R0072 tRNA Pput_R0072 NC_009512.1 4242593 4242668 R tRNA-Glu complement(4242593..4242668) Pseudomonas putida F1 5194574 Pput_R0073 tRNA Pput_R0073 NC_009512.1 4242711 4242786 R tRNA-Ala complement(4242711..4242786) Pseudomonas putida F1 5195041 Pput_R0074 tRNA Pput_R0074 NC_009512.1 4242838 4242913 R tRNA-Glu complement(4242838..4242913) Pseudomonas putida F1 5191520 Pput_R0075 tRNA Pput_R0075 NC_009512.1 4242986 4243061 R tRNA-Ala complement(4242986..4243061) Pseudomonas putida F1 5191919 Pput_R0076 tRNA Pput_R0076 NC_009512.1 4251314 4251389 D tRNA-Asn 4251314..4251389 Pseudomonas putida F1 5195385 Pput_R0077 tRNA Pput_R0077 NC_009512.1 4316361 4316436 R tRNA-Gly complement(4316361..4316436) Pseudomonas putida F1 5195366 Pput_R0078 tRNA Pput_R0078 NC_009512.1 4316522 4316597 R tRNA-Gly complement(4316522..4316597) Pseudomonas putida F1 5192248 Pput_R0079 tRNA Pput_R0079 NC_009512.1 4316601 4316676 R tRNA-Glu complement(4316601..4316676) Pseudomonas putida F1 5191995 Pput_R0080 tRNA Pput_R0080 NC_009512.1 4316769 4316844 R tRNA-Gly complement(4316769..4316844) Pseudomonas putida F1 5191071 Pput_R0081 tRNA Pput_R0081 NC_009512.1 4316847 4316922 R tRNA-Glu complement(4316847..4316922) Pseudomonas putida F1 5194830 Pput_R0082 tRNA Pput_R0082 NC_009512.1 4347692 4347781 R tRNA-Ser complement(4347692..4347781) Pseudomonas putida F1 5193258 Pput_R0083 tRNA Pput_R0083 NC_009512.1 4531511 4531587 R tRNA-Asp complement(4531511..4531587) Pseudomonas putida F1 5190406 Pput_R0084 tRNA Pput_R0084 NC_009512.1 4531601 4531676 R tRNA-Val complement(4531601..4531676) Pseudomonas putida F1 5195300 Pput_R0085 tRNA Pput_R0085 NC_009512.1 4531847 4531923 R tRNA-Asp complement(4531847..4531923) Pseudomonas putida F1 5193848 Pput_R0086 tRNA Pput_R0086 NC_009512.1 4531937 4532012 R tRNA-Val complement(4531937..4532012) Pseudomonas putida F1 5192177 Pput_R0087 tRNA Pput_R0087 NC_009512.1 4825075 4825148 D tRNA-Gly 4825075..4825148 Pseudomonas putida F1 5192760 Pput_R0091 tRNA Pput_R0091 NC_009512.1 5074606 5074681 R tRNA-Ala complement(5074606..5074681) Pseudomonas putida F1 5192861 Pput_R0092 tRNA Pput_R0092 NC_009512.1 5074706 5074782 R tRNA-Ile complement(5074706..5074782) Pseudomonas putida F1 5192823 Pput_R0094 tRNA Pput_R0094 NC_009512.1 5124893 5124969 R tRNA-Met complement(5124893..5124969) Pseudomonas putida F1 5195459 Pput_R0095 tRNA Pput_R0095 NC_009512.1 5125070 5125155 R tRNA-Leu complement(5125070..5125155) Pseudomonas putida F1 5191134 Pput_R0097 tRNA Pput_R0097 NC_009512.1 5331494 5331580 D tRNA-Leu 5331494..5331580 Pseudomonas putida F1 5192284 Pput_R0098 tRNA Pput_R0098 NC_009512.1 5331669 5331755 D tRNA-Leu 5331669..5331755 Pseudomonas putida F1 5193745 Pput_R0001 rRNA Pput_R0001 NC_009512.1 185124 186672 D 16S ribosomal RNA 185124..186672 Pseudomonas putida F1 5193433 Pput_R0002 rRNA Pput_R0002 NC_009512.1 186953 189855 D 23S ribosomal RNA 186953..189855 Pseudomonas putida F1 5194216 Pput_R0003 rRNA Pput_R0003 NC_009512.1 189979 190094 D 5S ribosomal RNA 189979..190094 Pseudomonas putida F1 5192802 Pput_R0004 rRNA Pput_R0004 NC_009512.1 190204 190319 D 5S ribosomal RNA 190204..190319 Pseudomonas putida F1 5195117 Pput_R0009 rRNA Pput_R0009 NC_009512.1 539837 541385 D 16S ribosomal RNA 539837..541385 Pseudomonas putida F1 5193653 Pput_R0012 rRNA Pput_R0012 NC_009512.1 541844 544746 D 23S ribosomal RNA 541844..544746 Pseudomonas putida F1 5191551 Pput_R0013 rRNA Pput_R0013 NC_009512.1 544881 544996 D 5S ribosomal RNA 544881..544996 Pseudomonas putida F1 5192128 Pput_R0018 rRNA Pput_R0018 NC_009512.1 717166 718714 D 16S ribosomal RNA 717166..718714 Pseudomonas putida F1 5191748 Pput_R0019 rRNA Pput_R0019 NC_009512.1 718995 721897 D 23S ribosomal RNA 718995..721897 Pseudomonas putida F1 5195096 Pput_R0020 rRNA Pput_R0020 NC_009512.1 722033 722148 D 5S ribosomal RNA 722033..722148 Pseudomonas putida F1 5193234 Pput_R0031 rRNA Pput_R0031 NC_009512.1 1342813 1344361 D 16S ribosomal RNA 1342813..1344361 Pseudomonas putida F1 5190278 Pput_R0034 rRNA Pput_R0034 NC_009512.1 1344820 1347722 D 23S ribosomal RNA 1344820..1347722 Pseudomonas putida F1 5190468 Pput_R0035 rRNA Pput_R0035 NC_009512.1 1347857 1347972 D 5S ribosomal RNA 1347857..1347972 Pseudomonas putida F1 5192423 Pput_R0060 rRNA Pput_R0060 NC_009512.1 3909594 3909720 R 5S ribosomal RNA complement(3909594..3909720) Pseudomonas putida F1 5190346 Pput_R0061 rRNA Pput_R0061 NC_009512.1 3909834 3912738 R 23S ribosomal RNA complement(3909834..3912738) Pseudomonas putida F1 5190953 Pput_R0064 rRNA Pput_R0064 NC_009512.1 3913241 3914778 R 16S ribosomal RNA complement(3913241..3914778) Pseudomonas putida F1 5194752 Pput_R0089 rRNA Pput_R0089 NC_009512.1 5071220 5071346 R 5S ribosomal RNA complement(5071220..5071346) Pseudomonas putida F1 5193761 Pput_R0090 rRNA Pput_R0090 NC_009512.1 5071460 5074364 R 23S ribosomal RNA complement(5071460..5074364) Pseudomonas putida F1 5194097 Pput_R0093 rRNA Pput_R0093 NC_009512.1 5074867 5076404 R 16S ribosomal RNA complement(5074867..5076404) Pseudomonas putida F1 5192945