-- dump date 20140620_010411 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001666253.1 167031022 5873260 complement(4..408) 1 NC_010322.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 408 rnpA 5873260 rnpA Pseudomonas putida GB-1 ribonuclease P YP_001666253.1 4 R 76869 CDS YP_001666254.1 167031023 5868001 complement(422..556) 1 NC_010322.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 556 rpmH 5868001 rpmH Pseudomonas putida GB-1 50S ribosomal protein L34 YP_001666254.1 422 R 76869 CDS YP_001666255.1 167031024 5868002 1152..2684 1 NC_010322.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 2684 dnaA 5868002 dnaA Pseudomonas putida GB-1 chromosomal replication initiation protein YP_001666255.1 1152 D 76869 CDS YP_001666256.1 167031025 5868003 2725..3828 1 NC_010322.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3828 5868003 PputGB1_0004 Pseudomonas putida GB-1 DNA polymerase III subunit beta YP_001666256.1 2725 D 76869 CDS YP_001666257.1 167031026 5868004 3844..4947 1 NC_010322.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4947 recF 5868004 recF Pseudomonas putida GB-1 recombination protein F YP_001666257.1 3844 D 76869 CDS YP_001666258.1 167031027 5868005 4952..7372 1 NC_010322.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 7372 gyrB 5868005 gyrB Pseudomonas putida GB-1 DNA gyrase subunit B YP_001666258.1 4952 D 76869 CDS YP_001666259.1 167031028 5868006 8209..8847 1 NC_010322.1 KEGG: bur:Bcep18194_C6542 hypothetical protein; hypothetical protein 8847 5868006 PputGB1_0007 Pseudomonas putida GB-1 hypothetical protein YP_001666259.1 8209 D 76869 CDS YP_001666260.1 167031029 5868007 8828..10786 1 NC_010322.1 PFAM: Integrase catalytic region; KEGG: bur:Bcep18194_C6543 hypothetical protein; integrase catalytic subunit 10786 5868007 PputGB1_0008 Pseudomonas putida GB-1 integrase catalytic subunit YP_001666260.1 8828 D 76869 CDS YP_001666261.1 167031030 5868008 10783..11742 1 NC_010322.1 SMART: AAA ATPase; KEGG: bur:Bcep18194_C6544 hypothetical protein; AAA ATPase 11742 5868008 PputGB1_0009 Pseudomonas putida GB-1 AAA ATPase YP_001666261.1 10783 D 76869 CDS YP_001666262.1 167031031 5868009 11818..13734 1 NC_010322.1 KEGG: pst:PSPTO_0030 hypothetical protein; hypothetical protein 13734 5868009 PputGB1_0010 Pseudomonas putida GB-1 hypothetical protein YP_001666262.1 11818 D 76869 CDS YP_001666263.1 167031032 5868010 13791..14150 1 NC_010322.1 KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 14150 5868010 PputGB1_0011 Pseudomonas putida GB-1 hypothetical protein YP_001666263.1 13791 D 76869 CDS YP_001666264.1 167031033 5868011 14522..14854 1 NC_010322.1 KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein 14854 5868011 PputGB1_0012 Pseudomonas putida GB-1 hypothetical protein YP_001666264.1 14522 D 76869 CDS YP_001666265.1 167031034 5868012 complement(14952..15407) 1 NC_010322.1 PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein 15407 5868012 PputGB1_0013 Pseudomonas putida GB-1 hypothetical protein YP_001666265.1 14952 R 76869 CDS YP_001666266.1 167031035 5868013 complement(15397..16176) 1 NC_010322.1 KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein 16176 5868013 PputGB1_0014 Pseudomonas putida GB-1 hypothetical protein YP_001666266.1 15397 R 76869 CDS YP_001666267.1 167031036 5868014 complement(16186..17301) 1 NC_010322.1 PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B 17301 5868014 PputGB1_0015 Pseudomonas putida GB-1 copper resistance B YP_001666267.1 16186 R 76869 CDS YP_001666268.1 167031037 5868015 complement(17291..17614) 1 NC_010322.1 KEGG: psa:PST_3382 hypothetical protein; hypothetical protein 17614 5868015 PputGB1_0016 Pseudomonas putida GB-1 hypothetical protein YP_001666268.1 17291 R 76869 CDS YP_001666269.1 167031038 5868016 complement(17629..19587) 1 NC_010322.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein 19587 5868016 PputGB1_0017 Pseudomonas putida GB-1 CopA family copper resistance protein YP_001666269.1 17629 R 76869 CDS YP_001666270.1 167031039 5868017 complement(19770..19976) 1 NC_010322.1 KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein 19976 5868017 PputGB1_0018 Pseudomonas putida GB-1 hypothetical protein YP_001666270.1 19770 R 76869 CDS YP_001666271.1 167031040 5868018 20143..20820 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psa:PST_3390 transcriptional activator CopR; two component heavy metal response transcriptional regulator 20820 5868018 PputGB1_0019 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001666271.1 20143 D 76869 CDS YP_001666272.1 167031041 5868019 20820..22226 1 NC_010322.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 22226 5868019 PputGB1_0020 Pseudomonas putida GB-1 heavy metal sensor signal transduction histidine kinase YP_001666272.1 20820 D 76869 CDS YP_001666273.1 167031042 5868020 22263..22610 1 NC_010322.1 KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 22610 5868020 PputGB1_0021 Pseudomonas putida GB-1 hypothetical protein YP_001666273.1 22263 D 76869 CDS YP_001666274.1 167031043 5868021 22697..23950 1 NC_010322.1 PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 23950 5868021 PputGB1_0022 Pseudomonas putida GB-1 outer membrane efflux protein YP_001666274.1 22697 D 76869 CDS YP_001666275.1 167031044 5868022 23947..25413 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 25413 5868022 PputGB1_0023 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001666275.1 23947 D 76869 CDS YP_001666276.1 167031045 5868023 25410..28568 1 NC_010322.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 28568 5868023 PputGB1_0024 Pseudomonas putida GB-1 CzcA family heavy metal efflux protein YP_001666276.1 25410 D 76869 CDS YP_001666277.1 167031046 5868024 28565..28912 1 NC_010322.1 KEGG: pap:PSPA7_4016 heavy metal efflux system protein, putative; hypothetical protein 28912 5868024 PputGB1_0025 Pseudomonas putida GB-1 hypothetical protein YP_001666277.1 28565 D 76869 CDS YP_001666278.1 167031047 5868025 complement(29327..29986) 1 NC_010322.1 KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 29986 5868025 PputGB1_0026 Pseudomonas putida GB-1 isoprenylcysteine carboxyl methyltransferase YP_001666278.1 29327 R 76869 CDS YP_001666279.1 167031048 5868026 complement(29983..30258) 1 NC_010322.1 KEGG: ajs:Ajs_1465 hypothetical protein; hypothetical protein 30258 5868026 PputGB1_0027 Pseudomonas putida GB-1 hypothetical protein YP_001666279.1 29983 R 76869 CDS YP_001666280.1 167031049 5868027 complement(30284..30739) 1 NC_010322.1 KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein 30739 5868027 PputGB1_0028 Pseudomonas putida GB-1 hypothetical protein YP_001666280.1 30284 R 76869 CDS YP_001666281.1 167031050 5868028 complement(30878..31900) 1 NC_010322.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: net:Neut_0066 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 31900 5868028 PputGB1_0029 Pseudomonas putida GB-1 hypothetical protein YP_001666281.1 30878 R 76869 CDS YP_001666282.1 167031051 5868029 complement(32166..32357) 1 NC_010322.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pmy:Pmen_2225 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 32357 5868029 PputGB1_0030 Pseudomonas putida GB-1 heavy metal transport/detoxification protein YP_001666282.1 32166 R 76869 CDS YP_001666283.1 167031052 5868030 complement(32704..35220) 1 NC_010322.1 KEGG: pmy:Pmen_2229 copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase 35220 5868030 PputGB1_0031 Pseudomonas putida GB-1 copper-translocating P-type ATPase YP_001666283.1 32704 R 76869 CDS YP_001666284.1 167031053 5868031 35491..35697 1 NC_010322.1 KEGG: pap:PSPA7_3842 probable transcriptional regulator; putative transcriptional regulator 35697 5868031 PputGB1_0032 Pseudomonas putida GB-1 putative transcriptional regulator YP_001666284.1 35491 D 76869 CDS YP_001666285.1 167031054 5868032 36052..37248 1 NC_010322.1 KEGG: rxy:Rxyl_2639 hypothetical protein; hypothetical protein 37248 5868032 PputGB1_0033 Pseudomonas putida GB-1 hypothetical protein YP_001666285.1 36052 D 76869 CDS YP_001666286.1 167031055 5868033 complement(37432..37764) 1 NC_010322.1 hypothetical protein 37764 5868033 PputGB1_0034 Pseudomonas putida GB-1 hypothetical protein YP_001666286.1 37432 R 76869 CDS YP_001666287.1 167031056 5868034 38080..38328 1 NC_010322.1 hypothetical protein 38328 5868034 PputGB1_0035 Pseudomonas putida GB-1 hypothetical protein YP_001666287.1 38080 D 76869 CDS YP_001666288.1 167031057 5868035 38639..39562 1 NC_010322.1 KEGG: pap:PSPA7_4526 hypothetical protein; hypothetical protein 39562 5868035 PputGB1_0036 Pseudomonas putida GB-1 hypothetical protein YP_001666288.1 38639 D 76869 CDS YP_001666289.1 167031058 5868036 complement(39747..39911) 1 NC_010322.1 hypothetical protein 39911 5868036 PputGB1_0037 Pseudomonas putida GB-1 hypothetical protein YP_001666289.1 39747 R 76869 CDS YP_001666290.1 167031059 5868037 complement(40357..40485) 1 NC_010322.1 KEGG: sbn:Sbal195_4409 hypothetical protein; hypothetical protein 40485 5868037 PputGB1_0038 Pseudomonas putida GB-1 hypothetical protein YP_001666290.1 40357 R 76869 CDS YP_001666291.1 167031060 5868038 complement(40608..42305) 1 NC_010322.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pau:PA14_39020 hypothetical protein; hypothetical protein 42305 5868038 PputGB1_0039 Pseudomonas putida GB-1 hypothetical protein YP_001666291.1 40608 R 76869 CDS YP_001666292.1 167031061 5868039 43189..44094 1 NC_010322.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pfl:PFL_5222 cobalt/cadmium/zinc transporter, CDF family; cation diffusion facilitator family transporter 44094 5868039 PputGB1_0040 Pseudomonas putida GB-1 cation diffusion facilitator family transporter YP_001666292.1 43189 D 76869 CDS YP_001666293.1 167031062 5868040 44252..44602 1 NC_010322.1 KEGG: mms:mma_3055 hypothetical protein; hypothetical protein 44602 5868040 PputGB1_0041 Pseudomonas putida GB-1 hypothetical protein YP_001666293.1 44252 D 76869 CDS YP_001666294.1 167031063 5868041 complement(44635..44961) 1 NC_010322.1 KEGG: psb:Psyr_4809 hypothetical protein; hypothetical protein 44961 5868041 PputGB1_0042 Pseudomonas putida GB-1 hypothetical protein YP_001666294.1 44635 R 76869 CDS YP_001666295.1 167031064 5867731 45651..46325 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 46325 5867731 PputGB1_0043 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001666295.1 45651 D 76869 CDS YP_001666296.1 167031065 5867732 46322..47740 1 NC_010322.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 47740 5867732 PputGB1_0044 Pseudomonas putida GB-1 heavy metal sensor signal transduction histidine kinase YP_001666296.1 46322 D 76869 CDS YP_001666297.1 167031066 5867733 complement(47798..48385) 1 NC_010322.1 hypothetical protein 48385 5867733 PputGB1_0045 Pseudomonas putida GB-1 hypothetical protein YP_001666297.1 47798 R 76869 CDS YP_001666298.1 167031067 5867734 48652..48873 1 NC_010322.1 hypothetical protein 48873 5867734 PputGB1_0046 Pseudomonas putida GB-1 hypothetical protein YP_001666298.1 48652 D 76869 CDS YP_001666299.1 167031068 5867735 complement(48956..50410) 1 NC_010322.1 PFAM: glycosyl transferase family 39; KEGG: pap:PSPA7_5537 hypothetical protein; glycosyl transferase family protein 50410 5867735 PputGB1_0047 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001666299.1 48956 R 76869 CDS YP_001666300.1 167031069 5867736 complement(50404..51387) 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: vha:VIBHAR_02791 hypothetical protein; ribonuclease III 51387 5867736 PputGB1_0048 Pseudomonas putida GB-1 ribonuclease III YP_001666300.1 50404 R 76869 CDS YP_001666301.1 167031070 5867737 complement(51353..51772) 1 NC_010322.1 PFAM: GtrA family protein; KEGG: sde:Sde_0136 hypothetical protein; GtrA family protein 51772 5867737 PputGB1_0049 Pseudomonas putida GB-1 GtrA family protein YP_001666301.1 51353 R 76869 CDS YP_001666302.1 167031071 5867738 52030..52998 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2828 transcriptional regulator, LysR family; LysR family transcriptional regulator 52998 5867738 PputGB1_0050 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666302.1 52030 D 76869 CDS YP_001666303.1 167031072 5867739 53209..54516 1 NC_010322.1 PFAM: phosphate-selective porin O and P; KEGG: pau:PA14_21620 phosphate-specific outer membrane porin OprP precursor; phosphate-selective porin O and P 54516 5867739 PputGB1_0051 Pseudomonas putida GB-1 phosphate-selective porin O and P YP_001666303.1 53209 D 76869 CDS YP_001666304.1 167031073 5867740 54536..54670 1 NC_010322.1 hypothetical protein 54670 5867740 PputGB1_0052 Pseudomonas putida GB-1 hypothetical protein YP_001666304.1 54536 D 76869 CDS YP_001666305.1 167031074 5867741 54815..55840 1 NC_010322.1 hypothetical protein 55840 5867741 PputGB1_0053 Pseudomonas putida GB-1 hypothetical protein YP_001666305.1 54815 D 76869 CDS YP_001666306.1 167031075 5867742 55968..56192 1 NC_010322.1 hypothetical protein 56192 5867742 PputGB1_0054 Pseudomonas putida GB-1 hypothetical protein YP_001666306.1 55968 D 76869 CDS YP_001666307.1 167031076 5867743 complement(56285..58282) 1 NC_010322.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_4435 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 58282 5867743 PputGB1_0055 Pseudomonas putida GB-1 heavy metal translocating P-type ATPase YP_001666307.1 56285 R 76869 CDS YP_001666308.1 167031077 5867744 complement(58485..58808) 1 NC_010322.1 KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein 58808 5867744 PputGB1_0056 Pseudomonas putida GB-1 hypothetical protein YP_001666308.1 58485 R 76869 CDS YP_001666309.1 167031078 5867745 complement(58971..62132) 1 NC_010322.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein 62132 5867745 PputGB1_0057 Pseudomonas putida GB-1 CzcA family heavy metal efflux protein YP_001666309.1 58971 R 76869 CDS YP_001666310.1 167031079 5867746 complement(62157..63407) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit 63407 5867746 PputGB1_0058 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001666310.1 62157 R 76869 CDS YP_001666311.1 167031080 5867747 complement(63476..64747) 1 NC_010322.1 PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein 64747 5867747 PputGB1_0059 Pseudomonas putida GB-1 outer membrane efflux protein YP_001666311.1 63476 R 76869 CDS YP_001666312.1 167031081 5867748 65151..66494 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 66494 5867748 PputGB1_0060 Pseudomonas putida GB-1 outer membrane porin YP_001666312.1 65151 D 76869 CDS YP_001666313.1 167031082 5867749 66984..67658 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5221 DNA-binding heavy metal response regulator, putative; two component heavy metal response transcriptional regulator 67658 5867749 PputGB1_0061 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001666313.1 66984 D 76869 CDS YP_001666314.1 167031083 5867750 67776..68099 1 NC_010322.1 KEGG: yen:YE1651 hypothetical protein; hypothetical protein 68099 5867750 PputGB1_0062 Pseudomonas putida GB-1 hypothetical protein YP_001666314.1 67776 D 76869 CDS YP_001666315.1 167031084 5867751 complement(68201..68728) 1 NC_010322.1 hypothetical protein 68728 5867751 PputGB1_0063 Pseudomonas putida GB-1 hypothetical protein YP_001666315.1 68201 R 76869 CDS YP_001666316.1 167031085 5867752 complement(68918..70345) 1 NC_010322.1 KEGG: nwi:Nwi_0260 hypothetical protein; hypothetical protein 70345 5867752 PputGB1_0064 Pseudomonas putida GB-1 hypothetical protein YP_001666316.1 68918 R 76869 CDS YP_001666317.1 167031086 5867753 complement(70397..70798) 1 NC_010322.1 hypothetical protein 70798 5867753 PputGB1_0065 Pseudomonas putida GB-1 hypothetical protein YP_001666317.1 70397 R 76869 CDS YP_001666318.1 167031087 5867754 complement(71537..71944) 1 NC_010322.1 KEGG: bxe:Bxe_B1530 hypothetical protein; hypothetical protein 71944 5867754 PputGB1_0066 Pseudomonas putida GB-1 hypothetical protein YP_001666318.1 71537 R 76869 CDS YP_001666319.1 167031088 5867755 complement(72074..73366) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN0005 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 73366 5867755 PputGB1_0067 Pseudomonas putida GB-1 putative sigma-54 specific transcriptional regulator YP_001666319.1 72074 R 76869 CDS YP_001666320.1 167031089 5867756 73589..74473 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 74473 5867756 PputGB1_0068 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001666320.1 73589 D 76869 CDS YP_001666321.1 167031090 5867757 74514..75782 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0008 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 75782 5867757 PputGB1_0069 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001666321.1 74514 D 76869 CDS YP_001666322.1 167031091 5867758 75779..76597 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein; hypothetical protein 76597 5867758 PputGB1_0070 Pseudomonas putida GB-1 hypothetical protein YP_001666322.1 75779 D 76869 CDS YP_001666323.1 167031092 5867759 complement(76586..77473) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0010 transcriptional regulator, LysR family; LysR family transcriptional regulator 77473 5867759 PputGB1_0071 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666323.1 76586 R 76869 CDS YP_001666324.1 167031093 5867760 77652..79298 1 NC_010322.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0012 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 79298 5867760 PputGB1_0072 Pseudomonas putida GB-1 glucose-methanol-choline oxidoreductase YP_001666324.1 77652 D 76869 CDS YP_001666325.1 167031094 5867761 79396..81015 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0013 major facilitator family transporter; general substrate transporter 81015 5867761 PputGB1_0073 Pseudomonas putida GB-1 general substrate transporter YP_001666325.1 79396 D 76869 CDS YP_001666326.1 167031095 5867762 complement(81193..81978) 1 NC_010322.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0014 N-acylhomoserine lactone synthase; phospholipid/glycerol acyltransferase 81978 5867762 PputGB1_0074 Pseudomonas putida GB-1 phospholipid/glycerol acyltransferase YP_001666326.1 81193 R 76869 CDS YP_001666327.1 167031096 5867763 complement(82025..82552) 1 NC_010322.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 82552 5867763 PputGB1_0075 Pseudomonas putida GB-1 D,D-heptose 1,7-bisphosphate phosphatase YP_001666327.1 82025 R 76869 CDS YP_001666328.1 167031097 5867764 complement(82556..84607) 1 NC_010322.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 84607 glyS 5867764 glyS Pseudomonas putida GB-1 glycyl-tRNA synthetase subunit beta YP_001666328.1 82556 R 76869 CDS YP_001666329.1 167031098 5867765 complement(84604..85551) 1 NC_010322.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 85551 glyQ 5867765 glyQ Pseudomonas putida GB-1 glycyl-tRNA synthetase subunit alpha YP_001666329.1 84604 R 76869 CDS YP_001666330.1 167031099 5867766 85635..86186 1 NC_010322.1 KEGG: pen:PSEEN0018 3-methyl-adenine DNA glycosylase I, constitutive; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 86186 5867766 PputGB1_0078 Pseudomonas putida GB-1 DNA-3-methyladenine glycosylase I YP_001666330.1 85635 D 76869 CDS YP_001666331.1 167031100 5867767 86228..87115 1 NC_010322.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 87115 5867767 PputGB1_0079 Pseudomonas putida GB-1 lipid A biosynthesis lauroyl acyltransferase YP_001666331.1 86228 D 76869 CDS YP_001666332.1 167031101 5867768 complement(87233..87541) 1 NC_010322.1 SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0021 hypothetical protein; hypothetical protein 87541 5867768 PputGB1_0080 Pseudomonas putida GB-1 hypothetical protein YP_001666332.1 87233 R 76869 CDS YP_001666333.1 167031102 5867769 complement(87553..88926) 1 NC_010322.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 88926 trkA 5867769 trkA Pseudomonas putida GB-1 potassium transporter peripheral membrane protein YP_001666333.1 87553 R 76869 CDS YP_001666334.1 167031103 5867770 complement(88950..90260) 1 NC_010322.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pen:PSEEN0023 ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase); sun protein 90260 5867770 PputGB1_0082 Pseudomonas putida GB-1 sun protein YP_001666334.1 88950 R 76869 CDS YP_001666335.1 167031104 5867771 complement(90257..91189) 1 NC_010322.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 91189 fmt 5867771 fmt Pseudomonas putida GB-1 methionyl-tRNA formyltransferase YP_001666335.1 90257 R 76869 CDS YP_001666336.1 167031105 5867772 complement(91250..91756) 1 NC_010322.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 91756 def 5867772 def Pseudomonas putida GB-1 peptide deformylase YP_001666336.1 91250 R 76869 CDS YP_001666337.1 167031106 5867773 91963..93060 1 NC_010322.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pen:PSEEN0026 smf protein, DNA processing chain A; DNA protecting protein DprA 93060 5867773 PputGB1_0085 Pseudomonas putida GB-1 DNA protecting protein DprA YP_001666337.1 91963 D 76869 CDS YP_001666338.1 167031107 5867774 93103..93660 1 NC_010322.1 PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN0027 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 93660 5867774 PputGB1_0086 Pseudomonas putida GB-1 SUA5/yciO/yrdC domain-containing protein YP_001666338.1 93103 D 76869 CDS YP_001666339.1 167031108 5867775 94569..94874 1 NC_010322.1 KEGG: pen:PSEEN0028 hypothetical protein; hypothetical protein 94874 5867775 PputGB1_0087 Pseudomonas putida GB-1 hypothetical protein YP_001666339.1 94569 D 76869 CDS YP_001666340.1 167031109 5867776 complement(95002..95979) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0029 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase 95979 5867776 PputGB1_0088 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001666340.1 95002 R 76869 CDS YP_001666341.1 167031110 5867777 96114..97025 1 NC_010322.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 97025 5867777 PputGB1_0089 Pseudomonas putida GB-1 coproporphyrinogen III oxidase YP_001666341.1 96114 D 76869 CDS YP_001666342.1 167031111 5867778 97051..97875 1 NC_010322.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 97875 aroE 5867778 aroE Pseudomonas putida GB-1 shikimate 5-dehydrogenase YP_001666342.1 97051 D 76869 CDS YP_001666343.1 167031112 5867779 complement(98019..99584) 1 NC_010322.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: pen:PSEEN0032 sulfate transporter; sulfate transporter 99584 5867779 PputGB1_0091 Pseudomonas putida GB-1 sulfate transporter YP_001666343.1 98019 R 76869 CDS YP_001666344.1 167031113 5867780 complement(99712..100635) 1 NC_010322.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN0033 glycine betaine-binding protein; choline ABC transporter periplasmic binding protein 100635 5867780 PputGB1_0092 Pseudomonas putida GB-1 choline ABC transporter periplasmic binding protein YP_001666344.1 99712 R 76869 CDS YP_001666345.1 167031114 5867781 complement(100650..102167) 1 NC_010322.1 TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: pen:PSEEN0034 choline sulfatase; choline-sulfatase 102167 5867781 PputGB1_0093 Pseudomonas putida GB-1 choline-sulfatase YP_001666345.1 100650 R 76869 CDS YP_001666346.1 167031115 5867782 102276..103175 1 NC_010322.1 TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0035 transcriptional regulator, LysR family; LysR family transcriptional regulator 103175 5867782 PputGB1_0094 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666346.1 102276 D 76869 CDS YP_001666347.1 167031116 5867783 complement(103291..103845) 1 NC_010322.1 KEGG: pfo:Pfl_0028 hypothetical protein; hypothetical protein 103845 5867783 PputGB1_0095 Pseudomonas putida GB-1 hypothetical protein YP_001666347.1 103291 R 76869 CDS YP_001666348.1 167031117 5867784 103898..104230 1 NC_010322.1 PFAM: Dopa 45-dioxygenase; KEGG: pen:PSEEN0036 hypothetical protein; DOPA 45-dioxygenase 104230 5867784 PputGB1_0096 Pseudomonas putida GB-1 DOPA 45-dioxygenase YP_001666348.1 103898 D 76869 CDS YP_001666349.1 167031118 5867785 complement(104350..105159) 1 NC_010322.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 105159 trpA 5867785 trpA Pseudomonas putida GB-1 tryptophan synthase subunit alpha YP_001666349.1 104350 R 76869 CDS YP_001666350.1 167031119 5867786 complement(105156..106373) 1 NC_010322.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 106373 5867786 PputGB1_0098 Pseudomonas putida GB-1 tryptophan synthase subunit beta YP_001666350.1 105156 R 76869 CDS YP_001666351.1 167031120 5867787 106484..107380 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0039 transcriptional regulator TrpI; LysR family transcriptional regulator 107380 5867787 PputGB1_0099 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666351.1 106484 D 76869 CDS YP_001666352.1 167031121 5867788 complement(107377..107700) 1 NC_010322.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN0040 hypothetical protein; hypothetical protein 107700 5867788 PputGB1_0100 Pseudomonas putida GB-1 hypothetical protein YP_001666352.1 107377 R 76869 CDS YP_001666353.1 167031122 5867789 107851..108066 1 NC_010322.1 PFAM: protein of unknown function DUF1458; KEGG: pen:PSEEN0041 hypothetical protein; hypothetical protein 108066 5867789 PputGB1_0101 Pseudomonas putida GB-1 hypothetical protein YP_001666353.1 107851 D 76869 CDS YP_001666354.1 167031123 5867790 108168..108389 1 NC_010322.1 PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0042 hypothetical protein; hypothetical protein 108389 5867790 PputGB1_0102 Pseudomonas putida GB-1 hypothetical protein YP_001666354.1 108168 D 76869 CDS YP_001666355.1 167031124 5867791 complement(108427..109431) 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pen:PSEEN0043 luciferase-like monooxygenase; luciferase family protein 109431 5867791 PputGB1_0103 Pseudomonas putida GB-1 luciferase family protein YP_001666355.1 108427 R 76869 CDS YP_001666356.1 167031125 5867792 109584..110009 1 NC_010322.1 PFAM: OsmC family protein; KEGG: pap:PSPA7_0059 osmotically inducible protein OsmC; OsmC family protein 110009 5867792 PputGB1_0104 Pseudomonas putida GB-1 OsmC family protein YP_001666356.1 109584 D 76869 CDS YP_001666357.1 167031126 5867793 110084..110317 1 NC_010322.1 PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein; hypothetical protein 110317 5867793 PputGB1_0105 Pseudomonas putida GB-1 hypothetical protein YP_001666357.1 110084 D 76869 CDS YP_001666358.1 167031127 5867794 complement(110353..110766) 1 NC_010322.1 KEGG: pen:PSEEN0045 lipoprotein; lipoprotein 110766 5867794 PputGB1_0106 Pseudomonas putida GB-1 lipoprotein YP_001666358.1 110353 R 76869 CDS YP_001666359.1 167031128 5867795 complement(110822..111235) 1 NC_010322.1 KEGG: pen:PSEEN0046 lipoprotein; lipoprotein 111235 5867795 PputGB1_0107 Pseudomonas putida GB-1 lipoprotein YP_001666359.1 110822 R 76869 CDS YP_001666360.1 167031129 5867796 111321..112394 1 NC_010322.1 KEGG: pen:PSEEN0047 hypothetical protein; hypothetical protein 112394 5867796 PputGB1_0108 Pseudomonas putida GB-1 hypothetical protein YP_001666360.1 111321 D 76869 CDS YP_001666361.1 167031130 5867797 complement(112428..113102) 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0048 hydrolase, HAD family; HAD family hydrolase 113102 5867797 PputGB1_0109 Pseudomonas putida GB-1 HAD family hydrolase YP_001666361.1 112428 R 76869 CDS YP_001666362.1 167031131 5867798 complement(113099..113647) 1 NC_010322.1 KEGG: pen:PSEEN0049 transferase; transferase 113647 5867798 PputGB1_0110 Pseudomonas putida GB-1 transferase YP_001666362.1 113099 R 76869 CDS YP_001666363.1 167031132 5867799 113714..115801 1 NC_010322.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pen:PSEEN0050 oligopeptidase A; oligopeptidase A 115801 5867799 PputGB1_0111 Pseudomonas putida GB-1 oligopeptidase A YP_001666363.1 113714 D 76869 CDS YP_001666364.1 167031133 5867800 115798..116079 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0051 hypothetical protein; hypothetical protein 116079 5867800 PputGB1_0112 Pseudomonas putida GB-1 hypothetical protein YP_001666364.1 115798 D 76869 CDS YP_001666365.1 167031134 5867801 116160..117218 1 NC_010322.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN0052 hypothetical protein; radical SAM domain-containing protein 117218 5867801 PputGB1_0113 Pseudomonas putida GB-1 radical SAM domain-containing protein YP_001666365.1 116160 D 76869 CDS YP_001666366.1 167031135 5867802 117511..118230 1 NC_010322.1 PFAM: carbonic anhydrase; KEGG: pen:PSEEN0053 carbonic anhydrase; carbonate dehydratase 118230 5867802 PputGB1_0114 Pseudomonas putida GB-1 carbonate dehydratase YP_001666366.1 117511 D 76869 CDS YP_001666367.1 167031136 5867803 118423..119955 1 NC_010322.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0054 sulfate transporter; sulfate transporter 119955 5867803 PputGB1_0115 Pseudomonas putida GB-1 sulfate transporter YP_001666367.1 118423 D 76869 CDS YP_001666368.1 167031137 5867804 complement(120088..120729) 1 NC_010322.1 KEGG: pen:PSEEN0055 hypothetical protein; hypothetical protein 120729 5867804 PputGB1_0116 Pseudomonas putida GB-1 hypothetical protein YP_001666368.1 120088 R 76869 CDS YP_001666369.1 167031138 5867805 121099..122226 1 NC_010322.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: pen:PSEEN0056 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 122226 5867805 PputGB1_0117 Pseudomonas putida GB-1 cytochrome c oxidase subunit II YP_001666369.1 121099 D 76869 CDS YP_001666370.1 167031139 5867806 122270..123859 1 NC_010322.1 KEGG: pen:PSEEN0057 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 123859 5867806 PputGB1_0118 Pseudomonas putida GB-1 cytochrome c oxidase subunit I YP_001666370.1 122270 D 76869 CDS YP_001666371.1 167031140 5867807 123870..124436 1 NC_010322.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 124436 5867807 PputGB1_0119 Pseudomonas putida GB-1 cytochrome C oxidase assembly protein YP_001666371.1 123870 D 76869 CDS YP_001666372.1 167031141 5867808 124453..125340 1 NC_010322.1 PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0059 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 125340 5867808 PputGB1_0120 Pseudomonas putida GB-1 cytochrome c oxidase subunit III YP_001666372.1 124453 D 76869 CDS YP_001666373.1 167031142 5867809 complement(125402..125605) 1 NC_010322.1 KEGG: pen:PSEEN0060 hypothetical protein; hypothetical protein 125605 5867809 PputGB1_0121 Pseudomonas putida GB-1 hypothetical protein YP_001666373.1 125402 R 76869 CDS YP_001666374.1 167031143 5867810 125657..126394 1 NC_010322.1 KEGG: pen:PSEEN0061 hypothetical protein; hypothetical protein 126394 5867810 PputGB1_0122 Pseudomonas putida GB-1 hypothetical protein YP_001666374.1 125657 D 76869 CDS YP_001666375.1 167031144 5867811 126363..126944 1 NC_010322.1 KEGG: pen:PSEEN0062 hypothetical protein; hypothetical protein 126944 5867811 PputGB1_0123 Pseudomonas putida GB-1 hypothetical protein YP_001666375.1 126363 D 76869 CDS YP_001666376.1 167031145 5867812 126954..128033 1 NC_010322.1 PFAM: cytochrome oxidase assembly; KEGG: pen:PSEEN0063 cytochrome oxidase assembly protein; cytochrome oxidase assembly 128033 5867812 PputGB1_0124 Pseudomonas putida GB-1 cytochrome oxidase assembly YP_001666376.1 126954 D 76869 CDS YP_001666377.1 167031146 5867813 128018..128911 1 NC_010322.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 128911 5867813 PputGB1_0125 Pseudomonas putida GB-1 protoheme IX farnesyltransferase YP_001666377.1 128018 D 76869 CDS YP_001666378.1 167031147 5867814 128908..129540 1 NC_010322.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN0065 electron transport protein, Sco1/SenC family; electron transport protein SCO1/SenC 129540 5867814 PputGB1_0126 Pseudomonas putida GB-1 electron transport protein SCO1/SenC YP_001666378.1 128908 D 76869 CDS YP_001666379.1 167031148 5867815 complement(129664..130434) 1 NC_010322.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0066 D-methionine-binding lipoprotein MetQ; NLPA lipoprotein 130434 5867815 PputGB1_0127 Pseudomonas putida GB-1 NLPA lipoprotein YP_001666379.1 129664 R 76869 CDS YP_001666380.1 167031149 5867816 complement(130499..131170) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0067 D-methionine ABC transporter MetI, membrane protein; binding-protein-dependent transport system inner membrane protein 131170 5867816 PputGB1_0128 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666380.1 130499 R 76869 CDS YP_001666381.1 167031150 5867817 complement(131170..132177) 1 NC_010322.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 132177 metN 5867817 metN Pseudomonas putida GB-1 DL-methionine transporter ATP-binding subunit YP_001666381.1 131170 R 76869 CDS YP_001666382.1 167031151 5867818 132405..134540 1 NC_010322.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 134540 katE 5867818 katE Pseudomonas putida GB-1 hydroperoxidase II YP_001666382.1 132405 D 76869 CDS YP_001666383.1 167031152 5867819 complement(134637..135344) 1 NC_010322.1 KEGG: pen:PSEEN0069 lipoprotein; lipoprotein 135344 5867819 PputGB1_0131 Pseudomonas putida GB-1 lipoprotein YP_001666383.1 134637 R 76869 CDS YP_001666384.1 167031153 5867820 complement(135472..136254) 1 NC_010322.1 PFAM: ABC-3 protein; KEGG: pen:PSEEN0070 zinc ABC transporter, permease protein; ABC-3 protein 136254 5867820 PputGB1_0132 Pseudomonas putida GB-1 ABC-3 protein YP_001666384.1 135472 R 76869 CDS YP_001666385.1 167031154 5867821 complement(136247..137020) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0071 zinc ABC transporter, ATP-binding protein; ABC transporter-like protein 137020 5867821 PputGB1_0133 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666385.1 136247 R 76869 CDS YP_001666386.1 167031155 5867822 complement(137017..137502) 1 NC_010322.1 KEGG: pen:PSEEN0072 transcriptional repressor of Zn transport system Zur; ferric uptake regulator family protein 137502 5867822 PputGB1_0134 Pseudomonas putida GB-1 ferric uptake regulator family protein YP_001666386.1 137017 R 76869 CDS YP_001666387.1 167031156 5867823 137521..138477 1 NC_010322.1 PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN0073 zinc ABC transporter ZnuA, periplasmic binding protein; periplasmic solute binding protein 138477 5867823 PputGB1_0135 Pseudomonas putida GB-1 periplasmic solute binding protein YP_001666387.1 137521 D 76869 CDS YP_001666388.1 167031157 5867824 complement(138528..139478) 1 NC_010322.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 139478 5867824 PputGB1_0136 Pseudomonas putida GB-1 homoserine kinase YP_001666388.1 138528 R 76869 CDS YP_001666389.1 167031158 5867825 complement(139548..139835) 1 NC_010322.1 KEGG: pen:PSEEN0075 hypothetical protein; hypothetical protein 139835 5867825 PputGB1_0137 Pseudomonas putida GB-1 hypothetical protein YP_001666389.1 139548 R 76869 CDS YP_001666390.1 167031159 5867826 139911..142658 1 NC_010322.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 142658 5867826 PputGB1_0138 Pseudomonas putida GB-1 DNA polymerase I YP_001666390.1 139911 D 76869 CDS YP_001666391.1 167031160 5867827 complement(142993..143625) 1 NC_010322.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 143625 engB 5867827 engB Pseudomonas putida GB-1 ribosome biogenesis GTP-binding protein YsxC YP_001666391.1 142993 R 76869 CDS YP_001666392.1 167031161 5867828 143827..144129 1 NC_010322.1 KEGG: pen:PSEEN0079 cytochrome c-type protein; cytochrome c-type protein 144129 5867828 PputGB1_0140 Pseudomonas putida GB-1 cytochrome c-type protein YP_001666392.1 143827 D 76869 CDS YP_001666393.1 167031162 5867829 144161..144778 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN0080 cytochrome c4; cytochrome c class I 144778 5867829 PputGB1_0141 Pseudomonas putida GB-1 cytochrome c class I YP_001666393.1 144161 D 76869 CDS YP_001666394.1 167031163 5867830 144929..145561 1 NC_010322.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN0081 thiol:disulfide interchange protein, periplasmic, alkali-inducible; DSBA oxidoreductase 145561 5867830 PputGB1_0142 Pseudomonas putida GB-1 DSBA oxidoreductase YP_001666394.1 144929 D 76869 CDS YP_001666395.1 167031164 5867831 145574..146428 1 NC_010322.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN0082 DNAse I-like hydrolase; endonuclease/exonuclease/phosphatase 146428 5867831 PputGB1_0143 Pseudomonas putida GB-1 endonuclease/exonuclease/phosphatase YP_001666395.1 145574 D 76869 CDS YP_001666396.1 167031165 5867832 146456..148384 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0083 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 148384 5867832 PputGB1_0144 Pseudomonas putida GB-1 diguanylate cyclase YP_001666396.1 146456 D 76869 CDS YP_001666397.1 167031166 5867833 148463..149251 1 NC_010322.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0084 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 149251 5867833 PputGB1_0145 Pseudomonas putida GB-1 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001666397.1 148463 D 76869 CDS YP_001666398.1 167031167 5867834 149339..150937 1 NC_010322.1 PFAM: EAL domain protein; KEGG: pen:PSEEN0085 signal transduction protein; EAL domain protein; EAL domain-containing protein 150937 5867834 PputGB1_0146 Pseudomonas putida GB-1 EAL domain-containing protein YP_001666398.1 149339 D 76869 CDS YP_001666399.1 167031168 5867835 complement(150952..152718) 1 NC_010322.1 KEGG: pen:PSEEN0086 alginate biosynthesis sensor protein KinB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 152718 5867835 PputGB1_0147 Pseudomonas putida GB-1 multi-sensor signal transduction histidine kinase YP_001666399.1 150952 R 76869 CDS YP_001666400.1 167031169 5867836 complement(152730..154076) 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0087 alginate biosynthesis response regulator AlgB; Fis family two component sigma-54 specific transcriptional regulator 154076 5867836 PputGB1_0148 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001666400.1 152730 R 76869 CDS YP_001666401.1 167031170 5867837 154286..155107 1 NC_010322.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_0251 osmotically inducible protein, putative; transport-associated 155107 5867837 PputGB1_0149 Pseudomonas putida GB-1 transport-associated YP_001666401.1 154286 D 76869 CDS YP_001666402.1 167031171 5867838 155282..155572 1 NC_010322.1 KEGG: pen:PSEEN0089 hypothetical protein; hypothetical protein 155572 5867838 PputGB1_0150 Pseudomonas putida GB-1 hypothetical protein YP_001666402.1 155282 D 76869 CDS YP_001666403.1 167031172 5867839 155616..155777 1 NC_010322.1 PFAM: protein of unknown function DUF1328; KEGG: pen:PSEEN0090 hypothetical protein; hypothetical protein 155777 5867839 PputGB1_0151 Pseudomonas putida GB-1 hypothetical protein YP_001666403.1 155616 D 76869 CDS YP_001666404.1 167031173 5867840 155780..156250 1 NC_010322.1 PFAM: Inhibitor of vertebrate lysozyme; KEGG: pen:PSEEN0091 hypothetical protein; inhibitor of vertebrate lysozyme 156250 5867840 PputGB1_0152 Pseudomonas putida GB-1 inhibitor of vertebrate lysozyme YP_001666404.1 155780 D 76869 CDS YP_001666405.1 167031174 5867841 156995..158323 1 NC_010322.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 158323 gltP 5867841 gltP Pseudomonas putida GB-1 glutamate/aspartate:proton symporter YP_001666405.1 156995 D 76869 CDS YP_001666406.1 167031175 5867842 158467..159696 1 NC_010322.1 PFAM: nucleoside recognition domain protein; KEGG: pen:PSEEN0094 hypothetical protein; nucleoside recognition domain-containing protein 159696 5867842 PputGB1_0154 Pseudomonas putida GB-1 nucleoside recognition domain-containing protein YP_001666406.1 158467 D 76869 CDS YP_001666407.1 167031176 5867843 complement(159678..160313) 1 NC_010322.1 KEGG: pen:PSEEN0095 lipoprotein; lipoprotein 160313 5867843 PputGB1_0155 Pseudomonas putida GB-1 lipoprotein YP_001666407.1 159678 R 76869 CDS YP_001666408.1 167031177 5867844 complement(160310..161248) 1 NC_010322.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein; hypothetical protein 161248 5867844 PputGB1_0156 Pseudomonas putida GB-1 hypothetical protein YP_001666408.1 160310 R 76869 CDS YP_001666409.1 167031178 5867845 complement(161252..162043) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0097 ABC transporter, ATP-binding protein; ABC transporter-like protein 162043 5867845 PputGB1_0157 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666409.1 161252 R 76869 CDS YP_001666410.1 167031179 5867846 complement(162040..163173) 1 NC_010322.1 PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein; hypothetical protein 163173 5867846 PputGB1_0158 Pseudomonas putida GB-1 hypothetical protein YP_001666410.1 162040 R 76869 CDS YP_001666411.1 167031180 5867847 complement(163288..164310) 1 NC_010322.1 KEGG: pen:PSEEN0099 hypothetical protein; hypothetical protein 164310 5867847 PputGB1_0159 Pseudomonas putida GB-1 hypothetical protein YP_001666411.1 163288 R 76869 CDS YP_001666412.1 167031181 5867848 complement(164405..165811) 1 NC_010322.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0100 metalloprotease, M16 family; peptidase M16 domain-containing protein 165811 5867848 PputGB1_0160 Pseudomonas putida GB-1 peptidase M16 domain-containing protein YP_001666412.1 164405 R 76869 CDS YP_001666413.1 167031182 5867849 complement(165842..167500) 1 NC_010322.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pen:PSEEN0101 Na+/Pi cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 167500 5867849 PputGB1_0161 Pseudomonas putida GB-1 sodium-dependent inorganic phosphate (Pi) transporter YP_001666413.1 165842 R 76869 CDS YP_001666414.1 167031183 5867850 complement(167698..168468) 1 NC_010322.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN0103 efflux transporter, TerC family; integral membrane protein TerC 168468 5867850 PputGB1_0162 Pseudomonas putida GB-1 integral membrane protein TerC YP_001666414.1 167698 R 76869 CDS YP_001666415.1 167031184 5867851 complement(168538..169845) 1 NC_010322.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN0104 citrate transporter; CitMHS family citrate/H+ symporter 169845 5867851 PputGB1_0163 Pseudomonas putida GB-1 CitMHS family citrate/H+ symporter YP_001666415.1 168538 R 76869 CDS YP_001666416.1 167031185 5867852 170112..170513 1 NC_010322.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN0106 hypothetical protein; glutathione-dependent formaldehyde-activating protein 170513 5867852 PputGB1_0164 Pseudomonas putida GB-1 glutathione-dependent formaldehyde-activating protein YP_001666416.1 170112 D 76869 CDS YP_001666417.1 167031186 5867853 complement(170638..172584) 1 NC_010322.1 KEGG: pen:PSEEN0107 hypothetical protein; hypothetical protein 172584 5867853 PputGB1_0165 Pseudomonas putida GB-1 hypothetical protein YP_001666417.1 170638 R 76869 CDS YP_001666418.1 167031187 5867854 complement(172590..172910) 1 NC_010322.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0108 hypothetical protein; hypothetical protein 172910 5867854 PputGB1_0166 Pseudomonas putida GB-1 hypothetical protein YP_001666418.1 172590 R 76869 CDS YP_001666419.1 167031188 5867855 complement(172946..173239) 1 NC_010322.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0110 hypothetical protein; hypothetical protein 173239 5867855 PputGB1_0167 Pseudomonas putida GB-1 hypothetical protein YP_001666419.1 172946 R 76869 CDS YP_001666420.1 167031189 5867856 complement(173329..173646) 1 NC_010322.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0111 hypothetical protein; hypothetical protein 173646 5867856 PputGB1_0168 Pseudomonas putida GB-1 hypothetical protein YP_001666420.1 173329 R 76869 CDS YP_001666421.1 167031190 5867857 complement(173955..174170) 1 NC_010322.1 KEGG: pen:PSEEN0112 hypothetical protein; hypothetical protein 174170 5867857 PputGB1_0169 Pseudomonas putida GB-1 hypothetical protein YP_001666421.1 173955 R 76869 CDS YP_001666422.1 167031191 5867858 complement(174572..176065) 1 NC_010322.1 KEGG: pen:PSEEN0113 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 176065 5867858 PputGB1_0170 Pseudomonas putida GB-1 succinate CoA transferase YP_001666422.1 174572 R 76869 CDS YP_001666423.1 167031192 5867859 complement(176252..177688) 1 NC_010322.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pen:PSEEN0114 pyridine nucleotide transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 177688 5867859 PputGB1_0171 Pseudomonas putida GB-1 NAD(P)(+) transhydrogenase YP_001666423.1 176252 R 76869 CDS YP_001666424.1 167031193 5867860 complement(177691..178005) 1 NC_010322.1 KEGG: pen:PSEEN0115 pyridine proton-translocating NAD(P) transhydrogenase; pyridine proton-translocating NAD(P) transhydrogenase 178005 5867860 PputGB1_0172 Pseudomonas putida GB-1 pyridine proton-translocating NAD(P) transhydrogenase YP_001666424.1 177691 R 76869 CDS YP_001666425.1 167031194 5867861 complement(178017..179138) 1 NC_010322.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pen:PSEEN0116 proton-translocating NAD(P) transhydrogenase; NAD(P)(+) transhydrogenase 179138 5867861 PputGB1_0173 Pseudomonas putida GB-1 NAD(P)(+) transhydrogenase YP_001666425.1 178017 R 76869 CDS YP_001666426.1 167031195 5867862 complement(179557..180474) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0118 transcriptional regulator, LysR family; LysR family transcriptional regulator 180474 5867862 PputGB1_0174 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666426.1 179557 R 76869 CDS YP_001666427.1 167031196 5867863 180636..181817 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0120 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 181817 5867863 PputGB1_0175 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001666427.1 180636 D 76869 CDS YP_001666428.1 167031197 5867864 181831..183051 1 NC_010322.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN0121 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 183051 5867864 PputGB1_0176 Pseudomonas putida GB-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001666428.1 181831 D 76869 CDS YP_001666429.1 167031198 5867875 complement(194508..196994) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_0121 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 196994 5867875 PputGB1_0178 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666429.1 194508 R 76869 CDS YP_001666430.1 167031199 5867876 complement(197089..198045) 1 NC_010322.1 PFAM: FecR protein; KEGG: pfl:PFL_0126 sigma factor regulatory protein, FecR/PupR family; anti-FecI sigma factor FecR 198045 5867876 PputGB1_0179 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666430.1 197089 R 76869 CDS YP_001666431.1 167031200 5867877 complement(198050..198553) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_0123 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor 198553 5867877 PputGB1_0180 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666431.1 198050 R 76869 CDS YP_001666432.1 167031201 5867878 complement(198665..199354) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0137 transcriptional regulator, GntR family; GntR family transcriptional regulator 199354 5867878 PputGB1_0181 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001666432.1 198665 R 76869 CDS YP_001666433.1 167031202 5867879 199628..200320 1 NC_010322.1 KEGG: pen:PSEEN0138 hypothetical protein; hypothetical protein 200320 5867879 PputGB1_0182 Pseudomonas putida GB-1 hypothetical protein YP_001666433.1 199628 D 76869 CDS YP_001666434.1 167031203 5867880 200331..202277 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0139 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 202277 5867880 PputGB1_0183 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001666434.1 200331 D 76869 CDS YP_001666435.1 167031204 5867881 complement(202476..203852) 1 NC_010322.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0145 type I toxin efflux membrane fusion protein; HlyD family type I secretion membrane fusion protein 203852 5867881 PputGB1_0184 Pseudomonas putida GB-1 HlyD family type I secretion membrane fusion protein YP_001666435.1 202476 R 76869 CDS YP_001666436.1 167031205 5867882 complement(203842..205998) 1 NC_010322.1 KEGG: pen:PSEEN0144 type I toxin efflux ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 205998 5867882 PputGB1_0185 Pseudomonas putida GB-1 type I secretion system ATPase YP_001666436.1 203842 R 76869 CDS YP_001666437.1 167031206 5867883 207003..227264 1 NC_010322.1 KEGG: pen:PSEEN0141 surface adhesion protein; TIGRFAM: conserved repeat domain protein; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; SMART: Pyrrolo-quinoline quinone; hypothetical protein 227264 5867883 PputGB1_0186 Pseudomonas putida GB-1 hypothetical protein YP_001666437.1 207003 D 76869 CDS YP_001666438.1 167031207 5867884 227409..227750 1 NC_010322.1 KEGG: pen:PSEEN0140 hypothetical protein; hypothetical protein 227750 5867884 PputGB1_0187 Pseudomonas putida GB-1 hypothetical protein YP_001666438.1 227409 D 76869 CDS YP_001666439.1 167031208 5867885 227949..228848 1 NC_010322.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0146 taurine catabolic dioxygenase; taurine dioxygenase 228848 5867885 PputGB1_0188 Pseudomonas putida GB-1 taurine dioxygenase YP_001666439.1 227949 D 76869 CDS YP_001666440.1 167031209 5867886 228867..229886 1 NC_010322.1 KEGG: pen:PSEEN0147 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein 229886 5867886 PputGB1_0189 Pseudomonas putida GB-1 ABC transporter substrate-binding protein YP_001666440.1 228867 D 76869 CDS YP_001666441.1 167031210 5867887 229893..230756 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0148 ABC transporter, ATP-binding protein; ABC transporter-like protein 230756 5867887 PputGB1_0190 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666441.1 229893 D 76869 CDS YP_001666442.1 167031211 5867888 230771..231634 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0149 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 231634 5867888 PputGB1_0191 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666442.1 230771 D 76869 CDS YP_001666443.1 167031212 5867889 231845..232333 1 NC_010322.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 232333 5867889 PputGB1_0192 Pseudomonas putida GB-1 Hcp1 family type VI secretion system effector YP_001666443.1 231845 D 76869 CDS YP_001666444.1 167031213 5867891 233336..233683 1 NC_010322.1 hypothetical protein 233683 5867891 PputGB1_0195 Pseudomonas putida GB-1 hypothetical protein YP_001666444.1 233336 D 76869 CDS YP_001666445.1 167031214 5867892 233774..234397 1 NC_010322.1 KEGG: psp:PSPPH_4491 hypothetical protein; hypothetical protein 234397 5867892 PputGB1_0196 Pseudomonas putida GB-1 hypothetical protein YP_001666445.1 233774 D 76869 CDS YP_001666446.1 167031215 5867893 234409..234753 1 NC_010322.1 hypothetical protein 234753 5867893 PputGB1_0197 Pseudomonas putida GB-1 hypothetical protein YP_001666446.1 234409 D 76869 CDS YP_001666447.1 167031216 5867894 complement(235045..235608) 1 NC_010322.1 KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein 235608 5867894 PputGB1_0198 Pseudomonas putida GB-1 transcriptional factor-like protein YP_001666447.1 235045 R 76869 CDS YP_001666448.1 167031217 5867895 235815..236609 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN0151 hypothetical protein; Sel1 domain-containing protein 236609 5867895 PputGB1_0199 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001666448.1 235815 D 76869 CDS YP_001666449.1 167031218 5867896 236754..237206 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN0152 transcriptional activator, MarR family; MarR family transcriptional regulator 237206 5867896 PputGB1_0200 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001666449.1 236754 D 76869 CDS YP_001666450.1 167031219 5867897 237203..239290 1 NC_010322.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN0153 efflux transporter, permease protein; fusaric acid resistance protein region 239290 5867897 PputGB1_0201 Pseudomonas putida GB-1 fusaric acid resistance protein region YP_001666450.1 237203 D 76869 CDS YP_001666451.1 167031220 5867898 239287..239499 1 NC_010322.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN0154 hypothetical protein; hypothetical protein 239499 5867898 PputGB1_0202 Pseudomonas putida GB-1 hypothetical protein YP_001666451.1 239287 D 76869 CDS YP_001666452.1 167031221 5867899 239496..240371 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0155 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 240371 5867899 PputGB1_0203 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001666452.1 239496 D 76869 CDS YP_001666453.1 167031222 5867900 240368..241786 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0156 efflux transporter, outer membrane protein; RND efflux system outer membrane lipoprotein 241786 5867900 PputGB1_0204 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001666453.1 240368 D 76869 CDS YP_001666454.1 167031223 5867901 241895..243838 1 NC_010322.1 PFAM: cytochrome c class I; iron permease FTR1; KEGG: pen:PSEEN5342 cytochrome c protein; cytochrome c class I 243838 5867901 PputGB1_0205 Pseudomonas putida GB-1 cytochrome c class I YP_001666454.1 241895 D 76869 CDS YP_001666455.1 167031224 5867902 complement(243876..244121) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5358 hypothetical protein; hypothetical protein 244121 5867902 PputGB1_0206 Pseudomonas putida GB-1 hypothetical protein YP_001666455.1 243876 R 76869 CDS YP_001666456.1 167031225 5867903 complement(244191..244490) 1 NC_010322.1 KEGG: pen:PSEEN5357 hypothetical protein; hypothetical protein 244490 5867903 PputGB1_0207 Pseudomonas putida GB-1 hypothetical protein YP_001666456.1 244191 R 76869 CDS YP_001666457.1 167031226 5867904 244639..245301 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5356 glutathione S-transferase; glutathione S-transferase domain-containing protein 245301 5867904 PputGB1_0208 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001666457.1 244639 D 76869 CDS YP_001666458.1 167031227 5867905 complement(245336..246730) 1 NC_010322.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 246730 5867905 PputGB1_0209 Pseudomonas putida GB-1 argininosuccinate lyase YP_001666458.1 245336 R 76869 CDS YP_001666459.1 167031228 5867906 247027..247770 1 NC_010322.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pen:PSEEN5354 alginate biosynthesis regulatory protein; LytTR family two component transcriptional regulator 247770 5867906 PputGB1_0210 Pseudomonas putida GB-1 LytTR family two component transcriptional regulator YP_001666459.1 247027 D 76869 CDS YP_001666460.1 167031229 5867907 247946..248887 1 NC_010322.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 248887 hemC 5867907 hemC Pseudomonas putida GB-1 porphobilinogen deaminase YP_001666460.1 247946 D 76869 CDS YP_001666461.1 167031230 5867908 248884..249651 1 NC_010322.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 249651 5867908 PputGB1_0212 Pseudomonas putida GB-1 uroporphyrinogen-III synthase YP_001666461.1 248884 D 76869 CDS YP_001666462.1 167031231 5867909 249697..250797 1 NC_010322.1 PFAM: protein of unknown function DUF513 hemX; KEGG: pen:PSEEN5351 uroporphyrin-III C-methyltransferase HemX; hypothetical protein 250797 5867909 PputGB1_0213 Pseudomonas putida GB-1 hypothetical protein YP_001666462.1 249697 D 76869 CDS YP_001666463.1 167031232 5867910 250794..252032 1 NC_010322.1 PFAM: HemY domain protein; KEGG: pen:PSEEN5350 HemY protein; HemY domain-containing protein 252032 5867910 PputGB1_0214 Pseudomonas putida GB-1 HemY domain-containing protein YP_001666463.1 250794 D 76869 CDS YP_001666464.1 167031233 5867911 252254..252760 1 NC_010322.1 PFAM: Disulphide bond formation protein DsbB; KEGG: pen:PSEEN0158 disulfide bond formation protein B1 (disulfide oxidoreductase 1); disulfide bond formation protein DsbB 252760 5867911 PputGB1_0215 Pseudomonas putida GB-1 disulfide bond formation protein DsbB YP_001666464.1 252254 D 76869 CDS YP_001666465.1 167031234 5867912 252992..253462 1 NC_010322.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 253462 5867912 PputGB1_0216 Pseudomonas putida GB-1 anti-RNA polymerase sigma 70 factor YP_001666465.1 252992 D 76869 CDS YP_001666466.1 167031235 5867913 complement(253472..254110) 1 NC_010322.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0160 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 254110 5867913 PputGB1_0217 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001666466.1 253472 R 76869 CDS YP_001666467.1 167031236 5867914 254289..255356 1 NC_010322.1 KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; alginate regulatory protein AlgP 255356 5867914 PputGB1_0218 Pseudomonas putida GB-1 alginate regulatory protein AlgP YP_001666467.1 254289 D 76869 CDS YP_001666468.1 167031237 5867915 complement(255332..255814) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0162 hypothetical protein; hypothetical protein 255814 5867915 PputGB1_0219 Pseudomonas putida GB-1 hypothetical protein YP_001666468.1 255332 R 76869 CDS YP_001666469.1 167031238 5867916 255928..257775 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0163 ABC transporter, ATP-binding protein; ABC transporter-like protein 257775 5867916 PputGB1_0220 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666469.1 255928 D 76869 CDS YP_001666470.1 167031239 5867917 257775..258362 1 NC_010322.1 KEGG: pen:PSEEN0164 hypothetical protein; hypothetical protein 258362 5867917 PputGB1_0221 Pseudomonas putida GB-1 hypothetical protein YP_001666470.1 257775 D 76869 CDS YP_001666471.1 167031240 5867918 258497..259129 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0165 transporter, LysE family; lysine exporter protein LysE/YggA 259129 5867918 PputGB1_0222 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001666471.1 258497 D 76869 CDS YP_001666472.1 167031241 5867919 complement(259201..259956) 1 NC_010322.1 PFAM: band 7 protein; KEGG: pen:PSEEN0166 hypothetical protein; hypothetical protein 259956 5867919 PputGB1_0223 Pseudomonas putida GB-1 hypothetical protein YP_001666472.1 259201 R 76869 CDS YP_001666473.1 167031242 5867920 complement(259959..261302) 1 NC_010322.1 PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN0167 hypothetical protein; hypothetical protein 261302 5867920 PputGB1_0224 Pseudomonas putida GB-1 hypothetical protein YP_001666473.1 259959 R 76869 CDS YP_001666474.1 167031243 5867921 261401..261859 1 NC_010322.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN0168 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 261859 5867921 PputGB1_0225 Pseudomonas putida GB-1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001666474.1 261401 D 76869 CDS YP_001666475.1 167031244 5867922 261921..262163 1 NC_010322.1 KEGG: pen:PSEEN0169 hypothetical protein; hypothetical protein 262163 5867922 PputGB1_0226 Pseudomonas putida GB-1 hypothetical protein YP_001666475.1 261921 D 76869 CDS YP_001666476.1 167031245 5867923 262233..262871 1 NC_010322.1 KEGG: pen:PSEEN0170 hypothetical protein; hypothetical protein 262871 5867923 PputGB1_0227 Pseudomonas putida GB-1 hypothetical protein YP_001666476.1 262233 D 76869 CDS YP_001666477.1 167031246 5867924 complement(262878..263315) 1 NC_010322.1 PFAM: CBS domain containing protein; KEGG: pen:PSEEN0171 hypothetical protein; hypothetical protein 263315 5867924 PputGB1_0228 Pseudomonas putida GB-1 hypothetical protein YP_001666477.1 262878 R 76869 CDS YP_001666478.1 167031247 5867925 complement(263486..265216) 1 NC_010322.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; KEGG: pen:PSEEN0172 dipeptidase; hypothetical protein 265216 5867925 PputGB1_0229 Pseudomonas putida GB-1 hypothetical protein YP_001666478.1 263486 R 76869 CDS YP_001666479.1 167031248 5867927 complement(265566..266429) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0180 alkyl sulfate ester ABC transporter AstC, ATP-binding protein; ABC transporter-like protein 266429 5867927 PputGB1_0230 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666479.1 265566 R 76869 CDS YP_001666480.1 167031249 5867928 complement(266426..268030) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0181 alkyl sulfate ester ABC transporter AstB, permease protein; binding-protein-dependent transport system inner membrane protein 268030 5867928 PputGB1_0231 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666480.1 266426 R 76869 CDS YP_001666481.1 167031250 5867929 268328..269365 1 NC_010322.1 PFAM: NMT1/THI5 like domain protein; KEGG: pen:PSEEN0182 aryl sulfate ester ABC transporter AstR, periplasmic binding protein; NMT1/THI5-like domain-containing protein 269365 5867929 PputGB1_0232 Pseudomonas putida GB-1 NMT1/THI5-like domain-containing protein YP_001666481.1 268328 D 76869 CDS YP_001666482.1 167031251 5867930 269406..270311 1 NC_010322.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0183 alkylsulfatase AtsK; taurine dioxygenase 270311 5867930 PputGB1_0233 Pseudomonas putida GB-1 taurine dioxygenase YP_001666482.1 269406 D 76869 CDS YP_001666483.1 167031252 5867931 complement(270430..271344) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0184 transcritpional regulator, LysR family; LysR family transcriptional regulator 271344 5867931 PputGB1_0234 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666483.1 270430 R 76869 CDS YP_001666484.1 167031253 5867932 271537..273873 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0186 TonB-dependent receptor; TonB-dependent receptor 273873 5867932 PputGB1_0235 Pseudomonas putida GB-1 TonB-dependent receptor YP_001666484.1 271537 D 76869 CDS YP_001666485.1 167031254 5867933 273891..275567 1 NC_010322.1 PFAM: Arylsulfotransferase; KEGG: pen:PSEEN0187 arylsulfotransferase; arylsulfotransferase 275567 5867933 PputGB1_0236 Pseudomonas putida GB-1 arylsulfotransferase YP_001666485.1 273891 D 76869 CDS YP_001666486.1 167031255 5867934 275860..277302 1 NC_010322.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 277302 gabD 5867934 gabD Pseudomonas putida GB-1 succinate-semialdehyde dehydrogenase I YP_001666486.1 275860 D 76869 CDS YP_001666487.1 167031256 5867935 277484..278761 1 NC_010322.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 278761 5867935 PputGB1_0238 Pseudomonas putida GB-1 4-aminobutyrate aminotransferase YP_001666487.1 277484 D 76869 CDS YP_001666488.1 167031257 5867936 278900..280138 1 NC_010322.1 PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0192 response regulator; putative signal transduction protein 280138 5867936 PputGB1_0239 Pseudomonas putida GB-1 putative signal transduction protein YP_001666488.1 278900 D 76869 CDS YP_001666489.1 167031258 5867937 complement(280197..281225) 1 NC_010322.1 KEGG: pen:PSEEN0195 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 281225 5867937 PputGB1_0240 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase YP_001666489.1 280197 R 76869 CDS YP_001666490.1 167031259 5867938 complement(281325..282509) 1 NC_010322.1 PFAM: fatty acid desaturase; KEGG: pen:PSEEN0196 fatty acid desaturase; fatty acid desaturase 282509 5867938 PputGB1_0241 Pseudomonas putida GB-1 fatty acid desaturase YP_001666490.1 281325 R 76869 CDS YP_001666491.1 167031260 5867939 282750..284645 1 NC_010322.1 KEGG: pen:PSEEN0197 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 284645 5867939 PputGB1_0242 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001666491.1 282750 D 76869 CDS YP_001666492.1 167031261 5867940 complement(284762..285406) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0198 D-methionine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 285406 5867940 PputGB1_0243 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666492.1 284762 R 76869 CDS YP_001666493.1 167031262 5867941 complement(285396..286505) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0199 D-methionine ABC transporter MetN, ATP-binding protein; ABC transporter-like protein 286505 5867941 PputGB1_0244 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666493.1 285396 R 76869 CDS YP_001666494.1 167031263 5867942 complement(286507..287307) 1 NC_010322.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0200 D-methionine-binding periplasmic lipoprotein MetQ; NLPA lipoprotein 287307 5867942 PputGB1_0245 Pseudomonas putida GB-1 NLPA lipoprotein YP_001666494.1 286507 R 76869 CDS YP_001666495.1 167031264 5867943 complement(287300..288691) 1 NC_010322.1 KEGG: pen:PSEEN0201 monooxygenase; monooxygenase 288691 5867943 PputGB1_0246 Pseudomonas putida GB-1 monooxygenase YP_001666495.1 287300 R 76869 CDS YP_001666496.1 167031265 5867944 complement(288691..289872) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0202 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 289872 5867944 PputGB1_0247 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001666496.1 288691 R 76869 CDS YP_001666497.1 167031266 5867945 complement(290026..291267) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0203 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 291267 5867945 PputGB1_0248 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001666497.1 290026 R 76869 CDS YP_001666498.1 167031267 5867946 complement(291532..292290) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0205 amino acid ABC transporter, ATP-binding protein; putative amino-acid ABC transporter ATP-binding protein YecC 292290 5867946 PputGB1_0249 Pseudomonas putida GB-1 putative amino-acid ABC transporter ATP-binding protein YecC YP_001666498.1 291532 R 76869 CDS YP_001666499.1 167031268 5867947 complement(292293..292961) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0206 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 292961 5867947 PputGB1_0250 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001666499.1 292293 R 76869 CDS YP_001666500.1 167031269 5867948 complement(292958..293752) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN0207 amino acid ABC transporter, periplasmic amino acid-binding protein; cystine transporter subunit 293752 5867948 PputGB1_0251 Pseudomonas putida GB-1 cystine transporter subunit YP_001666500.1 292958 R 76869 CDS YP_001666501.1 167031270 5867949 294061..294993 1 NC_010322.1 KEGG: pen:PSEEN0208 serine O-acetyltransferase; Serine O-acetyltransferase 294993 5867949 PputGB1_0252 Pseudomonas putida GB-1 Serine O-acetyltransferase YP_001666501.1 294061 D 76869 CDS YP_001666502.1 167031271 5867950 295222..297225 1 NC_010322.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0209 choline/glycine betaine transporter, BCCT family; choline/carnitine/betaine transporter 297225 5867950 PputGB1_0253 Pseudomonas putida GB-1 choline/carnitine/betaine transporter YP_001666502.1 295222 D 76869 CDS YP_001666503.1 167031272 5867951 complement(297352..298185) 1 NC_010322.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 298185 tauD 5867951 tauD Pseudomonas putida GB-1 taurine dioxygenase YP_001666503.1 297352 R 76869 CDS YP_001666504.1 167031273 5867952 complement(298234..299073) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0211 taurine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 299073 5867952 PputGB1_0255 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666504.1 298234 R 76869 CDS YP_001666505.1 167031274 5867953 complement(299070..299858) 1 NC_010322.1 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 299858 tauB 5867953 tauB Pseudomonas putida GB-1 taurine transporter ATP-binding subunit YP_001666505.1 299070 R 76869 CDS YP_001666506.1 167031275 5867954 complement(299872..300843) 1 NC_010322.1 KEGG: pen:PSEEN0213 taurine ABC transporter, periplasmic taurine-binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; taurine ABC transporter periplasmic binding protein 300843 5867954 PputGB1_0257 Pseudomonas putida GB-1 taurine ABC transporter periplasmic binding protein YP_001666506.1 299872 R 76869 CDS YP_001666507.1 167031276 5867955 301352..302680 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0214 outer membrane porin OprE; outer membrane porin 302680 5867955 PputGB1_0258 Pseudomonas putida GB-1 outer membrane porin YP_001666507.1 301352 D 76869 CDS YP_001666508.1 167031277 5867956 302846..303484 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN0215 thiol-specific antioxidant protein LsfA; peroxidase 303484 5867956 PputGB1_0259 Pseudomonas putida GB-1 peroxidase YP_001666508.1 302846 D 76869 CDS YP_001666509.1 167031278 5867957 303793..304386 1 NC_010322.1 PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN0217 NAD(P)H-dependent FMN reductase; NAD(P)H-dependent FMN reductase 304386 5867957 PputGB1_0260 Pseudomonas putida GB-1 NAD(P)H-dependent FMN reductase YP_001666509.1 303793 D 76869 CDS YP_001666510.1 167031279 5867958 304472..305437 1 NC_010322.1 KEGG: pen:PSEEN0218 sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 305437 5867958 PputGB1_0261 Pseudomonas putida GB-1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001666510.1 304472 D 76869 CDS YP_001666511.1 167031280 5867959 305498..306646 1 NC_010322.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 306646 5867959 PputGB1_0262 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001666511.1 305498 D 76869 CDS YP_001666512.1 167031281 5867960 306657..307454 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0220 sulfonate ABC transporter, permease protein SsuC; binding-protein-dependent transport system inner membrane protein 307454 5867960 PputGB1_0263 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666512.1 306657 D 76869 CDS YP_001666513.1 167031282 5867961 307451..308263 1 NC_010322.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 308263 ssuB 5867961 ssuB Pseudomonas putida GB-1 aliphatic sulfonates transport ATP-binding subunit YP_001666513.1 307451 D 76869 CDS YP_001666514.1 167031283 5867962 308308..308523 1 NC_010322.1 PFAM: TOBE domain protein; KEGG: pen:PSEEN0222 organosulfonate utilization protein SsuF; TOBE domain-containing protein 308523 5867962 PputGB1_0265 Pseudomonas putida GB-1 TOBE domain-containing protein YP_001666514.1 308308 D 76869 CDS YP_001666515.1 167031284 5867963 complement(308570..314062) 1 NC_010322.1 KEGG: pfo:Pfl_4544 hypothetical protein; hypothetical protein 314062 5867963 PputGB1_0266 Pseudomonas putida GB-1 hypothetical protein YP_001666515.1 308570 R 76869 CDS YP_001666516.1 167031285 5867964 complement(314148..314783) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN0223 transcriptional regulator, TetR family; TetR family transcriptional regulator 314783 5867964 PputGB1_0267 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001666516.1 314148 R 76869 CDS YP_001666517.1 167031286 5867965 complement(314783..316375) 1 NC_010322.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 316375 5867965 PputGB1_0268 Pseudomonas putida GB-1 glutamate--cysteine ligase YP_001666517.1 314783 R 76869 CDS YP_001666518.1 167031287 5867966 complement(316514..316897) 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0225 thioesterase; thioesterase superfamily protein 316897 5867966 PputGB1_0269 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001666518.1 316514 R 76869 CDS YP_001666519.1 167031288 5867967 complement(316897..319221) 1 NC_010322.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: pen:PSEEN0226 RNA-binding transcription accessory protein; RNA-binding S1 domain-containing protein 319221 5867967 PputGB1_0270 Pseudomonas putida GB-1 RNA-binding S1 domain-containing protein YP_001666519.1 316897 R 76869 CDS YP_001666520.1 167031289 5867968 319439..320179 1 NC_010322.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 320179 ompR 5867968 ompR Pseudomonas putida GB-1 osmolarity response regulator YP_001666520.1 319439 D 76869 CDS YP_001666521.1 167031290 5867969 320193..321506 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0228 osmolarity sensor protein EnvZ; integral membrane sensor signal transduction histidine kinase 321506 5867969 PputGB1_0272 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001666521.1 320193 D 76869 CDS YP_001666522.1 167031291 5867970 complement(321538..322443) 1 NC_010322.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: pen:PSEEN0229 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 322443 5867970 PputGB1_0273 Pseudomonas putida GB-1 alpha-L-glutamate ligase YP_001666522.1 321538 R 76869 CDS YP_001666523.1 167031292 5867971 complement(322440..322979) 1 NC_010322.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN0230 hypothetical protein; hypothetical protein 322979 5867971 PputGB1_0274 Pseudomonas putida GB-1 hypothetical protein YP_001666523.1 322440 R 76869 CDS YP_001666524.1 167031293 5867972 323032..323433 1 NC_010322.1 PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN0231 heat shock protein 15, ribosome associated; RNA-binding S4 domain-containing protein 323433 5867972 PputGB1_0275 Pseudomonas putida GB-1 RNA-binding S4 domain-containing protein YP_001666524.1 323032 D 76869 CDS YP_001666525.1 167031294 5867973 complement(323536..324330) 1 NC_010322.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pen:PSEEN0232 hypothetical protein; phosphoesterase PA-phosphatase-like protein 324330 5867973 PputGB1_0276 Pseudomonas putida GB-1 phosphoesterase PA-phosphatase-like protein YP_001666525.1 323536 R 76869 CDS YP_001666526.1 167031295 5867974 324450..325349 1 NC_010322.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 325349 hslO 5867974 hslO Pseudomonas putida GB-1 Hsp33-like chaperonin YP_001666526.1 324450 D 76869 CDS YP_001666527.1 167031296 5867975 325529..327070 1 NC_010322.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 327070 5867975 PputGB1_0278 Pseudomonas putida GB-1 phosphoenolpyruvate carboxykinase YP_001666527.1 325529 D 76869 CDS YP_001666528.1 167031297 5867976 327224..327664 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0236 thioesterase; thioesterase superfamily protein 327664 5867976 PputGB1_0279 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001666528.1 327224 D 76869 CDS YP_001666529.1 167031298 5867977 complement(327720..328199) 1 NC_010322.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN0239 hypothetical protein; 17 kDa surface antigen 328199 5867977 PputGB1_0280 Pseudomonas putida GB-1 17 kDa surface antigen YP_001666529.1 327720 R 76869 CDS YP_001666530.1 167031299 5867978 complement(328396..330741) 1 NC_010322.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN0240 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 330741 5867978 PputGB1_0281 Pseudomonas putida GB-1 oxidoreductase alpha (molybdopterin) subunit YP_001666530.1 328396 R 76869 CDS YP_001666531.1 167031300 5867979 complement(330747..331577) 1 NC_010322.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pen:PSEEN0241 formate dehydrogenase accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 331577 5867979 PputGB1_0282 Pseudomonas putida GB-1 formate dehydrogenase family accessory protein FdhD YP_001666531.1 330747 R 76869 CDS YP_001666532.1 167031301 5867980 331754..332194 1 NC_010322.1 PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: pen:PSEEN0243 hypothetical protein; LysM domain/BON superfamily protein 332194 5867980 PputGB1_0283 Pseudomonas putida GB-1 LysM domain/BON superfamily protein YP_001666532.1 331754 D 76869 CDS YP_001666533.1 167031302 5867981 complement(332245..332907) 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0244 hydrolase, haloacid dehalogenase family, subfamily IA, variant 3; HAD family hydrolase 332907 5867981 PputGB1_0284 Pseudomonas putida GB-1 HAD family hydrolase YP_001666533.1 332245 R 76869 CDS YP_001666534.1 167031303 5867982 332972..333538 1 NC_010322.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 333538 nudE 5867982 nudE Pseudomonas putida GB-1 ADP-ribose diphosphatase NudE YP_001666534.1 332972 D 76869 CDS YP_001666535.1 167031304 5867983 333535..334353 1 NC_010322.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN0246 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 334353 5867983 PputGB1_0286 Pseudomonas putida GB-1 3'(2'),5'-bisphosphate nucleotidase YP_001666535.1 333535 D 76869 CDS YP_001666536.1 167031305 5867984 complement(334401..334856) 1 NC_010322.1 TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: pen:PSEEN0247 hypothetical protein; thioesterase domain-containing protein 334856 5867984 PputGB1_0287 Pseudomonas putida GB-1 thioesterase domain-containing protein YP_001666536.1 334401 R 76869 CDS YP_001666537.1 167031306 5867985 complement(334856..336262) 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0248 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 336262 5867985 PputGB1_0288 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001666537.1 334856 R 76869 CDS YP_001666538.1 167031307 5867986 complement(336259..338073) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0249 sensor histidine kinase; histidine kinase 338073 5867986 PputGB1_0289 Pseudomonas putida GB-1 histidine kinase YP_001666538.1 336259 R 76869 CDS YP_001666539.1 167031308 5867987 complement(338116..338661) 1 NC_010322.1 KEGG: pen:PSEEN0251 dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 338661 5867987 PputGB1_0290 Pseudomonas putida GB-1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001666539.1 338116 R 76869 CDS YP_001666540.1 167031309 5867988 338940..340046 1 NC_010322.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 340046 5867988 PputGB1_0291 Pseudomonas putida GB-1 agmatine deiminase YP_001666540.1 338940 D 76869 CDS YP_001666541.1 167031310 5867989 340230..340427 1 NC_010322.1 KEGG: pfl:PFL_0309 hypothetical protein; hypothetical protein 340427 5867989 PputGB1_0292 Pseudomonas putida GB-1 hypothetical protein YP_001666541.1 340230 D 76869 CDS YP_001666542.1 167031311 5867990 complement(340499..342595) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0263 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 342595 5867990 PputGB1_0293 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666542.1 340499 R 76869 CDS YP_001666543.1 167031312 5867991 343100..344419 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0264 outer membrane protein OprE3; outer membrane porin 344419 5867991 PputGB1_0294 Pseudomonas putida GB-1 outer membrane porin YP_001666543.1 343100 D 76869 CDS YP_001666544.1 167031313 5867992 complement(344450..346117) 1 NC_010322.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN0265 glutamate synthase, large subunit; glutamate synthase 346117 5867992 PputGB1_0295 Pseudomonas putida GB-1 glutamate synthase YP_001666544.1 344450 R 76869 CDS YP_001666545.1 167031314 5867993 complement(346231..347598) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bur:Bcep18194_C7107 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 347598 5867993 PputGB1_0296 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001666545.1 346231 R 76869 CDS YP_001666546.1 167031315 5867994 complement(347600..348322) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mfa:Mfla_2739 two component transcriptional regulator, winged helix family; two component transcriptional regulator 348322 5867994 PputGB1_0297 Pseudomonas putida GB-1 two component transcriptional regulator YP_001666546.1 347600 R 76869 CDS YP_001666547.1 167031316 5867995 348463..350760 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpt:Bpet3198 TonB-dependent outer membrane receptor; TonB-dependent siderophore receptor 350760 5867995 PputGB1_0298 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666547.1 348463 D 76869 CDS YP_001666548.1 167031317 5867996 complement(350822..351028) 1 NC_010322.1 KEGG: pen:PSEEN5227 hypothetical protein; hypothetical protein 351028 5867996 PputGB1_0299 Pseudomonas putida GB-1 hypothetical protein YP_001666548.1 350822 R 76869 CDS YP_001666549.1 167031318 5867998 complement(351417..351665) 1 NC_010322.1 KEGG: pen:PSEEN5218 hypothetical protein; hypothetical protein 351665 5867998 PputGB1_0300 Pseudomonas putida GB-1 hypothetical protein YP_001666549.1 351417 R 76869 CDS YP_001666550.1 167031319 5867999 complement(351815..352054) 1 NC_010322.1 hypothetical protein 352054 5867999 PputGB1_0301 Pseudomonas putida GB-1 hypothetical protein YP_001666550.1 351815 R 76869 CDS YP_001666551.1 167031320 5868000 complement(352081..353286) 1 NC_010322.1 KEGG: pen:PSEEN5211 hypothetical protein; hypothetical protein 353286 5868000 PputGB1_0302 Pseudomonas putida GB-1 hypothetical protein YP_001666551.1 352081 R 76869 CDS YP_001666552.1 167031321 5868042 complement(353351..354040) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 354040 5868042 PputGB1_0303 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001666552.1 353351 R 76869 CDS YP_001666553.1 167031322 5868043 complement(354040..354732) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5209 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 354732 5868043 PputGB1_0304 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001666553.1 354040 R 76869 CDS YP_001666554.1 167031323 5868044 complement(354787..355539) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5208 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 355539 5868044 PputGB1_0305 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001666554.1 354787 R 76869 CDS YP_001666555.1 167031324 5868045 complement(355551..356324) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5207 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 356324 5868045 PputGB1_0306 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666555.1 355551 R 76869 CDS YP_001666556.1 167031325 5868046 356966..358351 1 NC_010322.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5205 gamma-aminobutyrate transporter; GABA permease 358351 5868046 PputGB1_0307 Pseudomonas putida GB-1 GABA permease YP_001666556.1 356966 D 76869 CDS YP_001666557.1 167031326 5868047 complement(358428..358871) 1 NC_010322.1 KEGG: pen:PSEEN5204 hypothetical protein; hypothetical protein 358871 5868047 PputGB1_0308 Pseudomonas putida GB-1 hypothetical protein YP_001666557.1 358428 R 76869 CDS YP_001666558.1 167031327 5868048 complement(358932..359912) 1 NC_010322.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN5203 polyphosphate kinase 2; hypothetical protein 359912 5868048 PputGB1_0309 Pseudomonas putida GB-1 hypothetical protein YP_001666558.1 358932 R 76869 CDS YP_001666559.1 167031328 5868050 complement(360248..360520) 1 NC_010322.1 PFAM: Fe(II) trafficking protein YggX; KEGG: pfl:PFL_0357 hypothetical protein; hypothetical protein 360520 5868050 PputGB1_0310 Pseudomonas putida GB-1 hypothetical protein YP_001666559.1 360248 R 76869 CDS YP_001666560.1 167031329 5868051 complement(360517..361584) 1 NC_010322.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pen:PSEEN5199 A/G specific adenine glycosylase; A/G-specific adenine glycosylase 361584 5868051 PputGB1_0311 Pseudomonas putida GB-1 A/G-specific adenine glycosylase YP_001666560.1 360517 R 76869 CDS YP_001666561.1 167031330 5868052 complement(361581..363827) 1 NC_010322.1 PFAM: AsmA family protein; KEGG: pen:PSEEN5198 AsmA protein; AsmA family protein 363827 5868052 PputGB1_0312 Pseudomonas putida GB-1 AsmA family protein YP_001666561.1 361581 R 76869 CDS YP_001666562.1 167031331 5868053 364135..365796 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5196 permease, MFS superfamily; major facilitator superfamily transporter 365796 5868053 PputGB1_0313 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001666562.1 364135 D 76869 CDS YP_001666563.1 167031332 5868054 365967..366560 1 NC_010322.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 366560 hisB 5868054 hisB Pseudomonas putida GB-1 imidazoleglycerol-phosphate dehydratase YP_001666563.1 365967 D 76869 CDS YP_001666564.1 167031333 5868055 366561..367199 1 NC_010322.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 367199 hisH 5868055 hisH Pseudomonas putida GB-1 imidazole glycerol phosphate synthase subunit HisH YP_001666564.1 366561 D 76869 CDS YP_001666565.1 167031334 5868056 367200..367460 1 NC_010322.1 KEGG: pen:PSEEN5193 hypothetical protein; hypothetical protein 367460 5868056 PputGB1_0316 Pseudomonas putida GB-1 hypothetical protein YP_001666565.1 367200 D 76869 CDS YP_001666566.1 167031335 5868057 367488..368225 1 NC_010322.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 368225 5868057 PputGB1_0317 Pseudomonas putida GB-1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001666566.1 367488 D 76869 CDS YP_001666567.1 167031336 5868058 368236..369006 1 NC_010322.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 369006 5868058 PputGB1_0318 Pseudomonas putida GB-1 imidazole glycerol phosphate synthase subunit HisF YP_001666567.1 368236 D 76869 CDS YP_001666568.1 167031337 5868059 complement(369126..370304) 1 NC_010322.1 KEGG: pen:PSEEN5190 glycine betaine/L-proline ABC transporter, ATP-binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; choline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; choline ABC transporter ATP-binding protein 370304 5868059 PputGB1_0319 Pseudomonas putida GB-1 choline ABC transporter ATP-binding protein YP_001666568.1 369126 R 76869 CDS YP_001666569.1 167031338 5868060 complement(370301..371146) 1 NC_010322.1 TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5189 glycine betaine/L-proline ABC transporter, permease protein; choline ABC transporter permease 371146 5868060 PputGB1_0320 Pseudomonas putida GB-1 choline ABC transporter permease YP_001666569.1 370301 R 76869 CDS YP_001666570.1 167031339 5868061 complement(371231..372178) 1 NC_010322.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5188 glycine betaine/L-proline ABC transporter, periplasmic binding protein; choline ABC transporter periplasmic binding protein 372178 5868061 PputGB1_0321 Pseudomonas putida GB-1 choline ABC transporter periplasmic binding protein YP_001666570.1 371231 R 76869 CDS YP_001666571.1 167031340 5868062 372621..373997 1 NC_010322.1 KEGG: pen:PSEEN5187 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 373997 5868062 PputGB1_0322 Pseudomonas putida GB-1 L-serine dehydratase 1 YP_001666571.1 372621 D 76869 CDS YP_001666572.1 167031341 5868063 374447..375553 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5186 transcriptional regulator, AraC family; AraC family transcriptional regulator 375553 5868063 PputGB1_0323 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001666572.1 374447 D 76869 CDS YP_001666573.1 167031342 5868064 complement(375612..375869) 1 NC_010322.1 KEGG: pen:PSEEN5185 hypothetical protein; hypothetical protein 375869 5868064 PputGB1_0324 Pseudomonas putida GB-1 hypothetical protein YP_001666573.1 375612 R 76869 CDS YP_001666574.1 167031343 5868065 complement(376135..376611) 1 NC_010322.1 KEGG: pen:PSEEN5184 hypothetical protein; hypothetical protein 376611 5868065 PputGB1_0325 Pseudomonas putida GB-1 hypothetical protein YP_001666574.1 376135 R 76869 CDS YP_001666575.1 167031344 5868066 complement(376622..377587) 1 NC_010322.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 377587 5868066 PputGB1_0326 Pseudomonas putida GB-1 3-hydroxybutyryl-CoA dehydrogenase YP_001666575.1 376622 R 76869 CDS YP_001666576.1 167031345 5868067 complement(377606..378490) 1 NC_010322.1 PFAM: protein of unknown function DUF849; KEGG: pen:PSEEN5182 hypothetical protein; hypothetical protein 378490 5868067 PputGB1_0327 Pseudomonas putida GB-1 hypothetical protein YP_001666576.1 377606 R 76869 CDS YP_001666577.1 167031346 5868068 complement(378616..379560) 1 NC_010322.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5181 substrate-binding region of ABC-type glycine transport system; choline ABC transporter periplasmic binding protein 379560 5868068 PputGB1_0328 Pseudomonas putida GB-1 choline ABC transporter periplasmic binding protein YP_001666577.1 378616 R 76869 CDS YP_001666578.1 167031347 5868069 379707..380651 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5180 transcriptional regulator, AraC family; AraC family transcriptional regulator 380651 5868069 PputGB1_0329 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001666578.1 379707 D 76869 CDS YP_001666579.1 167031348 5868070 complement(380733..381134) 1 NC_010322.1 PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN5179 hypothetical protein; hypothetical protein 381134 5868070 PputGB1_0330 Pseudomonas putida GB-1 hypothetical protein YP_001666579.1 380733 R 76869 CDS YP_001666580.1 167031349 5868071 381419..382396 1 NC_010322.1 PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN5178 dipeptidase; membrane dipeptidase 382396 5868071 PputGB1_0331 Pseudomonas putida GB-1 membrane dipeptidase YP_001666580.1 381419 D 76869 CDS YP_001666581.1 167031350 5868072 382474..383004 1 NC_010322.1 KEGG: pen:PSEEN5177 hypothetical protein; hypothetical protein 383004 5868072 PputGB1_0332 Pseudomonas putida GB-1 hypothetical protein YP_001666581.1 382474 D 76869 CDS YP_001666582.1 167031351 5868073 383020..385080 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN5176 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 385080 5868073 PputGB1_0333 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001666582.1 383020 D 76869 CDS YP_001666583.1 167031352 5868074 385289..387241 1 NC_010322.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN5175 iron-sulfur cluster-binding protein; hypothetical protein 387241 5868074 PputGB1_0334 Pseudomonas putida GB-1 hypothetical protein YP_001666583.1 385289 D 76869 CDS YP_001666584.1 167031353 5868075 387241..388473 1 NC_010322.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN5174 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 388473 5868075 PputGB1_0335 Pseudomonas putida GB-1 electron transfer flavoprotein subunit alpha YP_001666584.1 387241 D 76869 CDS YP_001666585.1 167031354 5868076 388484..389254 1 NC_010322.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN5173 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit 389254 5868076 PputGB1_0336 Pseudomonas putida GB-1 electron transfer flavoprotein alpha/beta-subunit YP_001666585.1 388484 D 76869 CDS YP_001666586.1 167031355 5868077 390130..390954 1 NC_010322.1 KEGG: psb:Psyr_4720 hypothetical protein; hypothetical protein 390954 5868077 PputGB1_0337 Pseudomonas putida GB-1 hypothetical protein YP_001666586.1 390130 D 76869 CDS YP_001666587.1 167031356 5868078 complement(390982..392274) 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN5169 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 392274 5868078 PputGB1_0338 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001666587.1 390982 R 76869 CDS YP_001666588.1 167031357 5868079 392570..393670 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN5168 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit 393670 5868079 PputGB1_0339 Pseudomonas putida GB-1 oxidoreductase FAD-binding subunit YP_001666588.1 392570 D 76869 CDS YP_001666589.1 167031358 5868080 complement(393815..395440) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5167 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 395440 5868080 PputGB1_0340 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001666589.1 393815 R 76869 CDS YP_001666590.1 167031359 5868081 395706..395936 1 NC_010322.1 KEGG: pen:PSEEN5166 hypothetical protein; hypothetical protein 395936 5868081 PputGB1_0341 Pseudomonas putida GB-1 hypothetical protein YP_001666590.1 395706 D 76869 CDS YP_001666591.1 167031360 5868082 395933..396235 1 NC_010322.1 PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5165 hypothetical protein; hypothetical protein 396235 5868082 PputGB1_0342 Pseudomonas putida GB-1 hypothetical protein YP_001666591.1 395933 D 76869 CDS YP_001666592.1 167031361 5868083 396440..398377 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5164 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 398377 5868083 PputGB1_0343 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001666592.1 396440 D 76869 CDS YP_001666593.1 167031362 5868084 complement(398431..399471) 1 NC_010322.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN5163 low-specificity L-threonine aldolase; threonine aldolase 399471 5868084 PputGB1_0344 Pseudomonas putida GB-1 threonine aldolase YP_001666593.1 398431 R 76869 CDS YP_001666594.1 167031363 5868085 399811..401064 1 NC_010322.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 401064 5868085 PputGB1_0345 Pseudomonas putida GB-1 serine hydroxymethyltransferase YP_001666594.1 399811 D 76869 CDS YP_001666595.1 167031364 5868086 401080..402330 1 NC_010322.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5161 sarcosine oxidase beta subunit; sarcosine oxidase subunit beta 402330 5868086 PputGB1_0346 Pseudomonas putida GB-1 sarcosine oxidase subunit beta YP_001666595.1 401080 D 76869 CDS YP_001666596.1 167031365 5868087 402345..402680 1 NC_010322.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta 402680 5868087 PputGB1_0347 Pseudomonas putida GB-1 sarcosine oxidase subunit delta YP_001666596.1 402345 D 76869 CDS YP_001666597.1 167031366 5868088 402677..405691 1 NC_010322.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5159 sarcosine oxidase (alpha subunit) oxidoreductase protein; sarcosine oxidase subunit alpha 405691 5868088 PputGB1_0348 Pseudomonas putida GB-1 sarcosine oxidase subunit alpha YP_001666597.1 402677 D 76869 CDS YP_001666598.1 167031367 5868089 405866..406498 1 NC_010322.1 TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase gamma subunit; KEGG: pen:PSEEN5158 sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 406498 5868089 PputGB1_0349 Pseudomonas putida GB-1 sarcosine oxidase subunit gamma YP_001666598.1 405866 D 76869 CDS YP_001666599.1 167031368 5868090 406511..407368 1 NC_010322.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 407368 5868090 PputGB1_0350 Pseudomonas putida GB-1 formyltetrahydrofolate deformylase YP_001666599.1 406511 D 76869 CDS YP_001666600.1 167031369 5868091 407643..408842 1 NC_010322.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5156 formaldehyde dehydrogenase, glutathione-independent; formaldehyde dehydrogenase 408842 5868091 PputGB1_0351 Pseudomonas putida GB-1 formaldehyde dehydrogenase YP_001666600.1 407643 D 76869 CDS YP_001666601.1 167031370 5868092 complement(408885..409829) 1 NC_010322.1 KEGG: psb:Psyr_0343 hypothetical protein; hypothetical protein 409829 5868092 PputGB1_0352 Pseudomonas putida GB-1 hypothetical protein YP_001666601.1 408885 R 76869 CDS YP_001666602.1 167031371 5868093 complement(410342..411292) 1 NC_010322.1 KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 411292 5868093 PputGB1_0355 Pseudomonas putida GB-1 hypothetical protein YP_001666602.1 410342 R 76869 CDS YP_001666603.1 167031372 5868094 411493..412074 1 NC_010322.1 KEGG: pen:PSEEN5155 hypothetical protein; hypothetical protein 412074 5868094 PputGB1_0356 Pseudomonas putida GB-1 hypothetical protein YP_001666603.1 411493 D 76869 CDS YP_001666604.1 167031373 5868095 complement(412309..413658) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pae:PA0322 probable transporter; amino acid permease-associated protein 413658 5868095 PputGB1_0357 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001666604.1 412309 R 76869 CDS YP_001666605.1 167031374 5868096 complement(413903..414790) 1 NC_010322.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN5154 acyltransferase; putative acyltransferase 414790 5868096 PputGB1_0358 Pseudomonas putida GB-1 putative acyltransferase YP_001666605.1 413903 R 76869 CDS YP_001666606.1 167031375 5868097 414973..415473 1 NC_010322.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN5153 hypothetical protein; hypothetical protein 415473 5868097 PputGB1_0359 Pseudomonas putida GB-1 hypothetical protein YP_001666606.1 414973 D 76869 CDS YP_001666607.1 167031376 5868098 415654..416334 1 NC_010322.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 416334 5868098 PputGB1_0360 Pseudomonas putida GB-1 DNA-binding response regulator CreB YP_001666607.1 415654 D 76869 CDS YP_001666608.1 167031377 5868099 416334..417770 1 NC_010322.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 417770 5868099 PputGB1_0361 Pseudomonas putida GB-1 sensory histidine kinase CreC YP_001666608.1 416334 D 76869 CDS YP_001666609.1 167031378 5868100 417936..419264 1 NC_010322.1 PFAM: Inner membrane CreD family protein; KEGG: pen:PSEEN5150 tolerance to colicin E2; hypothetical protein 419264 5868100 PputGB1_0362 Pseudomonas putida GB-1 hypothetical protein YP_001666609.1 417936 D 76869 CDS YP_001666610.1 167031379 5868101 complement(419431..420054) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5149 glutathione S-transferase; glutathione S-transferase domain-containing protein 420054 5868101 PputGB1_0363 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001666610.1 419431 R 76869 CDS YP_001666611.1 167031380 5868102 complement(420058..420726) 1 NC_010322.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 420726 5868102 PputGB1_0364 Pseudomonas putida GB-1 methionine sulfoxide reductase A YP_001666611.1 420058 R 76869 CDS YP_001666612.1 167031381 5868103 complement(420892..423582) 1 NC_010322.1 KEGG: pen:PSEEN5147 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 423582 5868103 PputGB1_0365 Pseudomonas putida GB-1 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001666612.1 420892 R 76869 CDS YP_001666613.1 167031382 5868104 complement(423855..425492) 1 NC_010322.1 KEGG: pen:PSEEN5146 dihydrolipoamide S-acetyltransferase, E2 component of the pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 425492 5868104 PputGB1_0366 Pseudomonas putida GB-1 dihydrolipoamide acetyltransferase YP_001666613.1 423855 R 76869 CDS YP_001666614.1 167031383 5868105 complement(425506..428151) 1 NC_010322.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 428151 aceE 5868105 aceE Pseudomonas putida GB-1 pyruvate dehydrogenase subunit E1 YP_001666614.1 425506 R 76869 CDS YP_001666615.1 167031384 5868106 428535..431468 1 NC_010322.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 431468 5868106 PputGB1_0368 Pseudomonas putida GB-1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001666615.1 428535 D 76869 CDS YP_001666616.1 167031385 5868107 431602..432651 1 NC_010322.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5143 ADP-heptose; LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 432651 5868107 PputGB1_0369 Pseudomonas putida GB-1 lipopolysaccharide heptosyltransferase II YP_001666616.1 431602 D 76869 CDS YP_001666617.1 167031386 5868108 432652..433710 1 NC_010322.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5142 ADP-heptose; LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I 433710 5868108 PputGB1_0370 Pseudomonas putida GB-1 lipopolysaccharide heptosyltransferase I YP_001666617.1 432652 D 76869 CDS YP_001666618.1 167031387 5868109 433710..434834 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN5141 glucosyltransferase I; glycosyl transferase group 1 protein 434834 5868109 PputGB1_0371 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001666618.1 433710 D 76869 CDS YP_001666619.1 167031388 5868110 434831..435637 1 NC_010322.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5140 lipopolysaccharide core biosynthesis; kinase for core heptose of lipopolysaccharide; lipopolysaccharide kinase 435637 5868110 PputGB1_0372 Pseudomonas putida GB-1 lipopolysaccharide kinase YP_001666619.1 434831 D 76869 CDS YP_001666620.1 167031389 5868111 435637..436371 1 NC_010322.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5139 heptose kinase WapP; lipopolysaccharide kinase 436371 5868111 PputGB1_0373 Pseudomonas putida GB-1 lipopolysaccharide kinase YP_001666620.1 435637 D 76869 CDS YP_001666621.1 167031390 5868112 436368..437120 1 NC_010322.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5138 heptose kinase WapQ; lipopolysaccharide kinase 437120 5868112 PputGB1_0374 Pseudomonas putida GB-1 lipopolysaccharide kinase YP_001666621.1 436368 D 76869 CDS YP_001666622.1 167031391 5868113 437120..438562 1 NC_010322.1 KEGG: pen:PSEEN5137 hypothetical protein; hypothetical protein 438562 5868113 PputGB1_0375 Pseudomonas putida GB-1 hypothetical protein YP_001666622.1 437120 D 76869 CDS YP_001666623.1 167031392 5868114 complement(438607..438783) 1 NC_010322.1 KEGG: pen:PSEEN5136 hypothetical protein; hypothetical protein 438783 5868114 PputGB1_0376 Pseudomonas putida GB-1 hypothetical protein YP_001666623.1 438607 R 76869 CDS YP_001666624.1 167031393 5868115 complement(438780..439892) 1 NC_010322.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN5135 hypothetical protein; PepSY-associated TM helix domain-containing protein 439892 5868115 PputGB1_0377 Pseudomonas putida GB-1 PepSY-associated TM helix domain-containing protein YP_001666624.1 438780 R 76869 CDS YP_001666625.1 167031394 5868116 complement(439949..442381) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN5134 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 442381 5868116 PputGB1_0378 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666625.1 439949 R 76869 CDS YP_001666626.1 167031395 5868117 complement(442600..443556) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN5132 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 443556 5868117 PputGB1_0379 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666626.1 442600 R 76869 CDS YP_001666627.1 167031396 5868118 complement(443553..444071) 1 NC_010322.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 444071 5868118 PputGB1_0380 Pseudomonas putida GB-1 RNA polymerase sigma factor YP_001666627.1 443553 R 76869 CDS YP_001666628.1 167031397 5868119 complement(444274..444984) 1 NC_010322.1 KEGG: pen:PSEEN5130 exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 444984 5868119 PputGB1_0381 Pseudomonas putida GB-1 DNA polymerase III subunit epsilon YP_001666628.1 444274 R 76869 CDS YP_001666629.1 167031398 5868120 complement(444981..446918) 1 NC_010322.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pen:PSEEN5129 nucleotidyltransferase, CBS domain/cAMP binding; hypothetical protein 446918 5868120 PputGB1_0382 Pseudomonas putida GB-1 hypothetical protein YP_001666629.1 444981 R 76869 CDS YP_001666630.1 167031399 5868121 447035..447571 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5128 response regulator; response regulator receiver protein 447571 5868121 PputGB1_0383 Pseudomonas putida GB-1 response regulator receiver protein YP_001666630.1 447035 D 76869 CDS YP_001666631.1 167031400 5868122 complement(447609..449786) 1 NC_010322.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 449786 5868122 PputGB1_0384 Pseudomonas putida GB-1 malate synthase G YP_001666631.1 447609 R 76869 CDS YP_001666632.1 167031401 5868123 450234..450752 1 NC_010322.1 PFAM: amino acid-binding ACT domain protein; KEGG: pen:PSEEN5126 hypothetical protein; amino acid-binding ACT domain-containing protein 450752 5868123 PputGB1_0385 Pseudomonas putida GB-1 amino acid-binding ACT domain-containing protein YP_001666632.1 450234 D 76869 CDS YP_001666633.1 167031402 5868124 complement(451085..451972) 1 NC_010322.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5125 RarD protein; transporter DMT superfamily protein 451972 5868124 PputGB1_0386 Pseudomonas putida GB-1 transporter DMT superfamily protein YP_001666633.1 451085 R 76869 CDS YP_001666634.1 167031403 5868125 complement(452157..453509) 1 NC_010322.1 KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein 453509 5868125 PputGB1_0387 Pseudomonas putida GB-1 hypothetical protein YP_001666634.1 452157 R 76869 CDS YP_001666635.1 167031404 5868126 complement(453527..454600) 1 NC_010322.1 KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein 454600 5868126 PputGB1_0388 Pseudomonas putida GB-1 hypothetical protein YP_001666635.1 453527 R 76869 CDS YP_001666636.1 167031405 5868127 complement(454873..455847) 1 NC_010322.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 455847 5868127 PputGB1_0389 Pseudomonas putida GB-1 serine/threonine protein kinase YP_001666636.1 454873 R 76869 CDS YP_001666637.1 167031406 5868128 complement(456005..456769) 1 NC_010322.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: pen:PSEEN5123 molybdate transport regulator ModE; ModE family transcriptional regulator 456769 5868128 PputGB1_0390 Pseudomonas putida GB-1 ModE family transcriptional regulator YP_001666637.1 456005 R 76869 CDS YP_001666638.1 167031407 5868129 complement(456828..457559) 1 NC_010322.1 PFAM: phosphoribosyltransferase; KEGG: pen:PSEEN5122 competence protein ComF; phosphoribosyltransferase 457559 5868129 PputGB1_0391 Pseudomonas putida GB-1 phosphoribosyltransferase YP_001666638.1 456828 R 76869 CDS YP_001666639.1 167031408 5868130 457649..458707 1 NC_010322.1 KEGG: pen:PSEEN5121 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 458707 5868130 PputGB1_0392 Pseudomonas putida GB-1 biotin synthase YP_001666639.1 457649 D 76869 CDS YP_001666640.1 167031409 5868131 458709..459881 1 NC_010322.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 459881 5868131 PputGB1_0393 Pseudomonas putida GB-1 8-amino-7-oxononanoate synthase YP_001666640.1 458709 D 76869 CDS YP_001666641.1 167031410 5868132 459874..460605 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5119 biotin biosynthesis BioH; carboxylesterase 460605 5868132 PputGB1_0394 Pseudomonas putida GB-1 carboxylesterase YP_001666641.1 459874 D 76869 CDS YP_001666642.1 167031411 5868133 460598..461416 1 NC_010322.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5118 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 461416 5868133 PputGB1_0395 Pseudomonas putida GB-1 biotin biosynthesis protein BioC YP_001666642.1 460598 D 76869 CDS YP_001666643.1 167031412 5868134 461427..462107 1 NC_010322.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 462107 bioD 5868134 bioD Pseudomonas putida GB-1 dithiobiotin synthetase YP_001666643.1 461427 D 76869 CDS YP_001666644.1 167031413 5868135 462250..462546 1 NC_010322.1 KEGG: pen:PSEEN5116 hypothetical protein; hypothetical protein 462546 5868135 PputGB1_0397 Pseudomonas putida GB-1 hypothetical protein YP_001666644.1 462250 D 76869 CDS YP_001666645.1 167031414 5868136 462836..464641 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5115 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 464641 5868136 PputGB1_0398 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001666645.1 462836 D 76869 CDS YP_001666646.1 167031415 5868137 464825..466108 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN5114 diguanylate cyclase (GGDEF domain); diguanylate cyclase 466108 5868137 PputGB1_0399 Pseudomonas putida GB-1 diguanylate cyclase YP_001666646.1 464825 D 76869 CDS YP_001666647.1 167031416 5868138 466233..468011 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN5113 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 468011 5868138 PputGB1_0400 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001666647.1 466233 D 76869 CDS YP_001666648.1 167031417 5868139 complement(468380..469303) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5111 transcriptional regulator, LysR family; LysR family transcriptional regulator 469303 5868139 PputGB1_0401 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666648.1 468380 R 76869 CDS YP_001666649.1 167031418 5868140 469513..470793 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN5110 acetylornithine aminotransferase; class III aminotransferase 470793 5868140 PputGB1_0402 Pseudomonas putida GB-1 class III aminotransferase YP_001666649.1 469513 D 76869 CDS YP_001666650.1 167031419 5868141 470945..471103 1 NC_010322.1 PFAM: protein of unknown function UPF0057; KEGG: pen:PSEEN5109 hypothetical protein; hypothetical protein 471103 5868141 PputGB1_0403 Pseudomonas putida GB-1 hypothetical protein YP_001666650.1 470945 D 76869 CDS YP_001666651.1 167031420 5868142 complement(471137..472960) 1 NC_010322.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: pen:PSEEN0393 prolyl oligopeptidase; peptidase S9 prolyl oligopeptidase 472960 5868142 PputGB1_0404 Pseudomonas putida GB-1 peptidase S9 prolyl oligopeptidase YP_001666651.1 471137 R 76869 CDS YP_001666652.1 167031421 5868143 complement(472926..474086) 1 NC_010322.1 KEGG: pen:PSEEN0394 coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III); TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 474086 5868143 PputGB1_0405 Pseudomonas putida GB-1 pyrroloquinoline quinone biosynthesis protein PqqE YP_001666652.1 472926 R 76869 CDS YP_001666653.1 167031422 5868144 complement(474058..474333) 1 NC_010322.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 474333 5868144 PputGB1_0406 Pseudomonas putida GB-1 pyrroloquinoline quinone biosynthesis protein PqqD YP_001666653.1 474058 R 76869 CDS YP_001666654.1 167031423 5868145 complement(474330..475085) 1 NC_010322.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 475085 5868145 PputGB1_0407 Pseudomonas putida GB-1 pyrroloquinoline quinone biosynthesis protein PqqC YP_001666654.1 474330 R 76869 CDS YP_001666655.1 167031424 5868146 complement(475095..476006) 1 NC_010322.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 476006 5868146 PputGB1_0408 Pseudomonas putida GB-1 pyrroloquinoline quinone biosynthesis protein PqqB YP_001666655.1 475095 R 76869 CDS YP_001666656.1 167031425 5868147 complement(476317..478617) 1 NC_010322.1 TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0399 coenzyme PQQ synthesis protein F; coenzyme PQQ biosynthesis protein PqqF 478617 5868147 PputGB1_0409 Pseudomonas putida GB-1 coenzyme PQQ biosynthesis protein PqqF YP_001666656.1 476317 R 76869 CDS YP_001666657.1 167031426 5868148 complement(478680..479474) 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 479474 5868148 PputGB1_0410 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001666657.1 478680 R 76869 CDS YP_001666658.1 167031427 5868149 complement(479489..481171) 1 NC_010322.1 PFAM: amine oxidase; KEGG: pen:PSEEN0401 amino oxydase; amine oxidase 481171 5868149 PputGB1_0411 Pseudomonas putida GB-1 amine oxidase YP_001666658.1 479489 R 76869 CDS YP_001666659.1 167031428 5868150 complement(481341..481802) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN0407 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 481802 5868150 PputGB1_0412 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001666659.1 481341 R 76869 CDS YP_001666660.1 167031429 5868151 481937..482491 1 NC_010322.1 KEGG: plu:plu2021 hypothetical protein; hypothetical protein 482491 5868151 PputGB1_0413 Pseudomonas putida GB-1 hypothetical protein YP_001666660.1 481937 D 76869 CDS YP_001666661.1 167031430 5868152 482671..483348 1 NC_010322.1 KEGG: psa:PST_3443 hypothetical protein; hypothetical protein 483348 5868152 PputGB1_0414 Pseudomonas putida GB-1 hypothetical protein YP_001666661.1 482671 D 76869 CDS YP_001666662.1 167031431 5868153 complement(483639..484418) 1 NC_010322.1 hypothetical protein 484418 5868153 PputGB1_0415 Pseudomonas putida GB-1 hypothetical protein YP_001666662.1 483639 R 76869 CDS YP_001666663.1 167031432 5868154 complement(484683..484979) 1 NC_010322.1 KEGG: pst:PSPTO_0535 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase 484979 5868154 PputGB1_0416 Pseudomonas putida GB-1 phage integrase family site specific recombinase YP_001666663.1 484683 R 76869 CDS YP_001666664.1 167031433 5868156 complement(485198..488941) 1 NC_010322.1 KEGG: pen:PSEEN0412 sensory box proten ; GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 488941 5868156 PputGB1_0417 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001666664.1 485198 R 76869 CDS YP_001666665.1 167031434 5868157 complement(489069..490919) 1 NC_010322.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 490919 5868157 PputGB1_0418 Pseudomonas putida GB-1 RNA polymerase sigma factor RpoD YP_001666665.1 489069 R 76869 CDS YP_001666666.1 167031435 5868158 complement(490987..492969) 1 NC_010322.1 synthesizes RNA primers at the replication forks; DNA primase 492969 dnaG 5868158 dnaG Pseudomonas putida GB-1 DNA primase YP_001666666.1 490987 R 76869 CDS YP_001666667.1 167031436 5868159 complement(493273..493488) 1 NC_010322.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 493488 rpsU 5868159 rpsU Pseudomonas putida GB-1 30S ribosomal protein S21 YP_001666667.1 493273 R 76869 CDS YP_001666668.1 167031437 5868160 493693..494718 1 NC_010322.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 494718 5868160 PputGB1_0421 Pseudomonas putida GB-1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001666668.1 493693 D 76869 CDS YP_001666669.1 167031438 5868161 complement(494736..495305) 1 NC_010322.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 495305 5868161 PputGB1_0422 Pseudomonas putida GB-1 putative glycerol-3-phosphate acyltransferase PlsY YP_001666669.1 494736 R 76869 CDS YP_001666670.1 167031439 5868162 495380..495736 1 NC_010322.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pen:PSEEN0419 dihydroneopterin aldolase; dihydroneopterin aldolase 495736 5868162 PputGB1_0423 Pseudomonas putida GB-1 dihydroneopterin aldolase YP_001666670.1 495380 D 76869 CDS YP_001666671.1 167031440 5868163 495727..496236 1 NC_010322.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: pen:PSEEN0420 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 496236 5868163 PputGB1_0424 Pseudomonas putida GB-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001666671.1 495727 D 76869 CDS YP_001666672.1 167031441 5868164 complement(496355..497461) 1 NC_010322.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 497461 cca 5868164 cca Pseudomonas putida GB-1 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_001666672.1 496355 R 76869 CDS YP_001666673.1 167031442 5868165 complement(497517..499085) 1 NC_010322.1 PFAM: SpoVR family protein; KEGG: pen:PSEEN0422 hypothetical protein; SpoVR family protein 499085 5868165 PputGB1_0426 Pseudomonas putida GB-1 SpoVR family protein YP_001666673.1 497517 R 76869 CDS YP_001666674.1 167031443 5868166 complement(499082..500356) 1 NC_010322.1 PFAM: protein of unknown function DUF444; KEGG: pen:PSEEN0423 hypothetical protein; hypothetical protein 500356 5868166 PputGB1_0427 Pseudomonas putida GB-1 hypothetical protein YP_001666674.1 499082 R 76869 CDS YP_001666675.1 167031444 5868167 complement(500498..502420) 1 NC_010322.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pen:PSEEN0424 serine protein kinase; putative serine protein kinase PrkA 502420 5868167 PputGB1_0428 Pseudomonas putida GB-1 putative serine protein kinase PrkA YP_001666675.1 500498 R 76869 CDS YP_001666676.1 167031445 5868168 complement(502704..503036) 1 NC_010322.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 503036 glpE 5868168 glpE Pseudomonas putida GB-1 thiosulfate sulfurtransferase YP_001666676.1 502704 R 76869 CDS YP_001666677.1 167031446 5868169 complement(503051..503917) 1 NC_010322.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 503917 apaH 5868169 apaH Pseudomonas putida GB-1 diadenosine tetraphosphatase YP_001666677.1 503051 R 76869 CDS YP_001666678.1 167031447 5868170 complement(503917..504297) 1 NC_010322.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 504297 apaG 5868170 apaG Pseudomonas putida GB-1 ApaG protein YP_001666678.1 503917 R 76869 CDS YP_001666679.1 167031448 5868171 complement(504443..505243) 1 NC_010322.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 505243 ksgA 5868171 ksgA Pseudomonas putida GB-1 dimethyladenosine transferase YP_001666679.1 504443 R 76869 CDS YP_001666680.1 167031449 5868172 complement(505240..506229) 1 NC_010322.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 506229 pdxA 5868172 pdxA Pseudomonas putida GB-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_001666680.1 505240 R 76869 CDS YP_001666681.1 167031450 5868173 complement(506226..507551) 1 NC_010322.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN0430 peptidyl-prolyl cis-trans isomerase A; SurA domain-containing protein 507551 5868173 PputGB1_0434 Pseudomonas putida GB-1 SurA domain-containing protein YP_001666681.1 506226 R 76869 CDS YP_001666682.1 167031451 5868174 complement(507526..510324) 1 NC_010322.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: pen:PSEEN0431 organic solvent tolerance protein precursor OstA; organic solvent tolerance protein 510324 5868174 PputGB1_0435 Pseudomonas putida GB-1 organic solvent tolerance protein YP_001666682.1 507526 R 76869 CDS YP_001666683.1 167031452 5868175 510455..511474 1 NC_010322.1 PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN0432 phosphotransferase; aminoglycoside phosphotransferase 511474 5868175 PputGB1_0436 Pseudomonas putida GB-1 aminoglycoside phosphotransferase YP_001666683.1 510455 D 76869 CDS YP_001666684.1 167031453 5868176 511471..512142 1 NC_010322.1 PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN0433 nucleotidyltransferase; nucleotidyl transferase 512142 5868176 PputGB1_0437 Pseudomonas putida GB-1 nucleotidyl transferase YP_001666684.1 511471 D 76869 CDS YP_001666685.1 167031454 5868177 512144..512911 1 NC_010322.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pen:PSEEN0434 DnaJ-like co-chaperone; heat shock protein DnaJ domain-containing protein 512911 5868177 PputGB1_0438 Pseudomonas putida GB-1 heat shock protein DnaJ domain-containing protein YP_001666685.1 512144 D 76869 CDS YP_001666686.1 167031455 5868178 complement(513013..514011) 1 NC_010322.1 KEGG: pen:PSEEN0435 hypothetical protein; hypothetical protein 514011 5868178 PputGB1_0439 Pseudomonas putida GB-1 hypothetical protein YP_001666686.1 513013 R 76869 CDS YP_001666687.1 167031456 5868179 514107..516494 1 NC_010322.1 KEGG: pen:PSEEN0436 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; extracellular solute-binding protein family 3; PAS/PAC sensor signal transduction histidine kinase 516494 5868179 PputGB1_0440 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001666687.1 514107 D 76869 CDS YP_001666688.1 167031457 5868180 516505..517134 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN0437 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 517134 5868180 PputGB1_0441 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001666688.1 516505 D 76869 CDS YP_001666689.1 167031458 5868181 517439..518563 1 NC_010322.1 KEGG: pen:PSEEN0438 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 518563 5868181 PputGB1_0442 Pseudomonas putida GB-1 spermidine/putrescine ABC transporter ATPase YP_001666689.1 517439 D 76869 CDS YP_001666690.1 167031459 5868182 518604..519638 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0439 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 519638 5868182 PputGB1_0443 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001666690.1 518604 D 76869 CDS YP_001666691.1 167031460 5868183 519705..520952 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0440 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 520952 5868183 PputGB1_0444 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666691.1 519705 D 76869 CDS YP_001666692.1 167031461 5868184 520963..521790 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0441 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 521790 5868184 PputGB1_0445 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001666692.1 520963 D 76869 CDS YP_001666693.1 167031462 5868185 521946..522620 1 NC_010322.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 522620 5868185 PputGB1_0446 Pseudomonas putida GB-1 ribulose-phosphate 3-epimerase YP_001666693.1 521946 D 76869 CDS YP_001666694.1 167031463 5868186 522617..523435 1 NC_010322.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 523435 5868186 PputGB1_0447 Pseudomonas putida GB-1 phosphoglycolate phosphatase YP_001666694.1 522617 D 76869 CDS YP_001666695.1 167031464 5868187 523505..524986 1 NC_010322.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 524986 5868187 PputGB1_0448 Pseudomonas putida GB-1 anthranilate synthase component I YP_001666695.1 523505 D 76869 CDS YP_001666696.1 167031465 5868188 complement(525019..526899) 1 NC_010322.1 KEGG: pen:PSEEN0445 esterase EstA precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 526899 5868188 PputGB1_0449 Pseudomonas putida GB-1 outer membrane autotransporter YP_001666696.1 525019 R 76869 CDS YP_001666697.1 167031466 5868189 527267..527860 1 NC_010322.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 527860 5868189 PputGB1_0450 Pseudomonas putida GB-1 anthranilate synthase component II YP_001666697.1 527267 D 76869 CDS YP_001666698.1 167031467 5868190 527870..528919 1 NC_010322.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 528919 trpD 5868190 trpD Pseudomonas putida GB-1 anthranilate phosphoribosyltransferase YP_001666698.1 527870 D 76869 CDS YP_001666699.1 167031468 5868191 528916..529749 1 NC_010322.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 529749 trpC 5868191 trpC Pseudomonas putida GB-1 Indole-3-glycerol phosphate synthase YP_001666699.1 528916 D 76869 CDS YP_001666700.1 167031469 5868192 529919..530623 1 NC_010322.1 KEGG: pen:PSEEN0450 hypothetical protein; hypothetical protein 530623 5868192 PputGB1_0453 Pseudomonas putida GB-1 hypothetical protein YP_001666700.1 529919 D 76869 CDS YP_001666701.1 167031470 5868193 complement(530620..531264) 1 NC_010322.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 531264 5868193 PputGB1_0454 Pseudomonas putida GB-1 cAMP-regulatory protein YP_001666701.1 530620 R 76869 CDS YP_001666702.1 167031471 5868194 531456..531878 1 NC_010322.1 PFAM: OsmC family protein; KEGG: pen:PSEEN0452 hypothetical protein; OsmC family protein 531878 5868194 PputGB1_0455 Pseudomonas putida GB-1 OsmC family protein YP_001666702.1 531456 D 76869 CDS YP_001666703.1 167031472 5868195 complement(531973..533013) 1 NC_010322.1 KEGG: pen:PSEEN0454 hypothetical protein; hypothetical protein 533013 5868195 PputGB1_0456 Pseudomonas putida GB-1 hypothetical protein YP_001666703.1 531973 R 76869 CDS YP_001666704.1 167031473 5868196 complement(533024..533671) 1 NC_010322.1 KEGG: pen:PSEEN0455 ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 533671 5868196 PputGB1_0457 Pseudomonas putida GB-1 ubiquinone biosynthesis protein COQ7 YP_001666704.1 533024 R 76869 CDS YP_001666705.1 167031474 5868197 complement(533737..534075) 1 NC_010322.1 PFAM: histidine triad (HIT) protein; KEGG: pen:PSEEN0456 hypothetical protein; histidine triad (HIT) protein 534075 5868197 PputGB1_0458 Pseudomonas putida GB-1 histidine triad (HIT) protein YP_001666705.1 533737 R 76869 CDS YP_001666706.1 167031475 5868198 complement(534139..534921) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN0457 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 534921 5868198 PputGB1_0459 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001666706.1 534139 R 76869 CDS YP_001666707.1 167031476 5868199 complement(534989..535945) 1 NC_010322.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN0458 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 535945 5868199 PputGB1_0460 Pseudomonas putida GB-1 2-nitropropane dioxygenase YP_001666707.1 534989 R 76869 CDS YP_001666708.1 167031477 5868200 complement(535974..536399) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_5103 hypothetical protein; hypothetical protein 536399 5868200 PputGB1_0461 Pseudomonas putida GB-1 hypothetical protein YP_001666708.1 535974 R 76869 CDS YP_001666709.1 167031478 5868201 536542..537576 1 NC_010322.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 537576 argC 5868201 argC Pseudomonas putida GB-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001666709.1 536542 D 76869 CDS YP_001666710.1 167031479 5868202 537676..538074 1 NC_010322.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 538074 5868202 PputGB1_0463 Pseudomonas putida GB-1 iron-sulfur cluster insertion protein ErpA YP_001666710.1 537676 D 76869 CDS YP_001666711.1 167031480 5868203 complement(538134..539225) 1 NC_010322.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 539225 anmK 5868203 anmK Pseudomonas putida GB-1 anhydro-N-acetylmuramic acid kinase YP_001666711.1 538134 R 76869 CDS YP_001666712.1 167031481 5868204 complement(539229..540650) 1 NC_010322.1 PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: pen:PSEEN0463 peptidase, M23/M37 family; peptidase M23B 540650 5868204 PputGB1_0465 Pseudomonas putida GB-1 peptidase M23B YP_001666712.1 539229 R 76869 CDS YP_001666713.1 167031482 5868205 540864..542063 1 NC_010322.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 542063 5868205 PputGB1_0466 Pseudomonas putida GB-1 tyrosyl-tRNA synthetase YP_001666713.1 540864 D 76869 CDS YP_001666714.1 167031483 5868209 547808..548767 1 NC_010322.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 548767 5868209 PputGB1_0467 Pseudomonas putida GB-1 biotin--protein ligase YP_001666714.1 547808 D 76869 CDS YP_001666715.1 167031484 5868210 548757..549506 1 NC_010322.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 549506 5868210 PputGB1_0468 Pseudomonas putida GB-1 pantothenate kinase YP_001666715.1 548757 D 76869 CDS YP_001666716.1 167031485 5868211 549514..549939 1 NC_010322.1 KEGG: pen:PSEEN0473 hypothetical protein; hypothetical protein 549939 5868211 PputGB1_0469 Pseudomonas putida GB-1 hypothetical protein YP_001666716.1 549514 D 76869 CDS YP_001666717.1 167031486 5868215 550458..551651 1 NC_010322.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 551651 5868215 PputGB1_0470 Pseudomonas putida GB-1 elongation factor Tu YP_001666717.1 550458 D 76869 CDS YP_001666718.1 167031487 5868217 551826..552194 1 NC_010322.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 552194 secE 5868217 secE Pseudomonas putida GB-1 preprotein translocase subunit SecE YP_001666718.1 551826 D 76869 CDS YP_001666719.1 167031488 5868218 552204..552737 1 NC_010322.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 552737 nusG 5868218 nusG Pseudomonas putida GB-1 transcription antitermination protein NusG YP_001666719.1 552204 D 76869 CDS YP_001666720.1 167031489 5868219 552857..553288 1 NC_010322.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 553288 rplK 5868219 rplK Pseudomonas putida GB-1 50S ribosomal protein L11 YP_001666720.1 552857 D 76869 CDS YP_001666721.1 167031490 5868220 553288..553983 1 NC_010322.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 553983 rplA 5868220 rplA Pseudomonas putida GB-1 50S ribosomal protein L1 YP_001666721.1 553288 D 76869 CDS YP_001666722.1 167031491 5868221 554181..554681 1 NC_010322.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 554681 rplJ 5868221 rplJ Pseudomonas putida GB-1 50S ribosomal protein L10 YP_001666722.1 554181 D 76869 CDS YP_001666723.1 167031492 5868222 554759..555124 1 NC_010322.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 555124 rplL 5868222 rplL Pseudomonas putida GB-1 50S ribosomal protein L7/L12 YP_001666723.1 554759 D 76869 CDS YP_001666724.1 167031493 5868223 555344..559417 1 NC_010322.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 559417 rpoB 5868223 rpoB Pseudomonas putida GB-1 DNA-directed RNA polymerase subunit beta YP_001666724.1 555344 D 76869 CDS YP_001666725.1 167031494 5868224 559482..563681 1 NC_010322.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 563681 5868224 PputGB1_0478 Pseudomonas putida GB-1 DNA-directed RNA polymerase subunit beta' YP_001666725.1 559482 D 76869 CDS YP_001666726.1 167031495 5868225 563893..564264 1 NC_010322.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 564264 rpsL 5868225 rpsL Pseudomonas putida GB-1 30S ribosomal protein S12 YP_001666726.1 563893 D 76869 CDS YP_001666727.1 167031496 5868226 564371..564841 1 NC_010322.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 564841 5868226 PputGB1_0480 Pseudomonas putida GB-1 30S ribosomal protein S7 YP_001666727.1 564371 D 76869 CDS YP_001666728.1 167031497 5868227 564872..567016 1 NC_010322.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 567016 5868227 PputGB1_0481 Pseudomonas putida GB-1 elongation factor G YP_001666728.1 564872 D 76869 CDS YP_001666729.1 167031498 5868228 567044..568237 1 NC_010322.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 568237 5868228 PputGB1_0482 Pseudomonas putida GB-1 elongation factor Tu YP_001666729.1 567044 D 76869 CDS YP_001666730.1 167031499 5868229 568379..568690 1 NC_010322.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 568690 rpsJ 5868229 rpsJ Pseudomonas putida GB-1 30S ribosomal protein S10 YP_001666730.1 568379 D 76869 CDS YP_001666731.1 167031500 5868230 568771..569406 1 NC_010322.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 569406 rplC 5868230 rplC Pseudomonas putida GB-1 50S ribosomal protein L3 YP_001666731.1 568771 D 76869 CDS YP_001666732.1 167031501 5868231 569419..570021 1 NC_010322.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 570021 rplD 5868231 rplD Pseudomonas putida GB-1 50S ribosomal protein L4 YP_001666732.1 569419 D 76869 CDS YP_001666733.1 167031502 5868232 570018..570317 1 NC_010322.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 570317 rplW 5868232 rplW Pseudomonas putida GB-1 50S ribosomal protein L23 YP_001666733.1 570018 D 76869 CDS YP_001666734.1 167031503 5868233 570332..571156 1 NC_010322.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 571156 rplB 5868233 rplB Pseudomonas putida GB-1 50S ribosomal protein L2 YP_001666734.1 570332 D 76869 CDS YP_001666735.1 167031504 5868234 571173..571448 1 NC_010322.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 571448 rpsS 5868234 rpsS Pseudomonas putida GB-1 30S ribosomal protein S19 YP_001666735.1 571173 D 76869 CDS YP_001666736.1 167031505 5868235 571460..571792 1 NC_010322.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 571792 rplV 5868235 rplV Pseudomonas putida GB-1 50S ribosomal protein L22 YP_001666736.1 571460 D 76869 CDS YP_001666737.1 167031506 5868236 571806..572492 1 NC_010322.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 572492 rpsC 5868236 rpsC Pseudomonas putida GB-1 30S ribosomal protein S3 YP_001666737.1 571806 D 76869 CDS YP_001666738.1 167031507 5868237 572505..572918 1 NC_010322.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 572918 rplP 5868237 rplP Pseudomonas putida GB-1 50S ribosomal protein L16 YP_001666738.1 572505 D 76869 CDS YP_001666739.1 167031508 5868238 572915..573109 1 NC_010322.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 573109 5868238 PputGB1_0492 Pseudomonas putida GB-1 50S ribosomal protein L29 YP_001666739.1 572915 D 76869 CDS YP_001666740.1 167031509 5868239 573112..573378 1 NC_010322.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 573378 rpsQ 5868239 rpsQ Pseudomonas putida GB-1 30S ribosomal protein S17 YP_001666740.1 573112 D 76869 CDS YP_001666741.1 167031510 5868240 573402..573770 1 NC_010322.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 573770 rplN 5868240 rplN Pseudomonas putida GB-1 50S ribosomal protein L14 YP_001666741.1 573402 D 76869 CDS YP_001666742.1 167031511 5868241 573782..574096 1 NC_010322.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 574096 rplX 5868241 rplX Pseudomonas putida GB-1 50S ribosomal protein L24 YP_001666742.1 573782 D 76869 CDS YP_001666743.1 167031512 5868242 574117..574656 1 NC_010322.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 574656 rplE 5868242 rplE Pseudomonas putida GB-1 50S ribosomal protein L5 YP_001666743.1 574117 D 76869 CDS YP_001666744.1 167031513 5868243 574670..574975 1 NC_010322.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 574975 rpsN 5868243 rpsN Pseudomonas putida GB-1 30S ribosomal protein S14 YP_001666744.1 574670 D 76869 CDS YP_001666745.1 167031514 5868244 575185..575577 1 NC_010322.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 575577 rpsH 5868244 rpsH Pseudomonas putida GB-1 30S ribosomal protein S8 YP_001666745.1 575185 D 76869 CDS YP_001666746.1 167031515 5868245 575590..576123 1 NC_010322.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 576123 rplF 5868245 rplF Pseudomonas putida GB-1 50S ribosomal protein L6 YP_001666746.1 575590 D 76869 CDS YP_001666747.1 167031516 5868246 576134..576484 1 NC_010322.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 576484 rplR 5868246 rplR Pseudomonas putida GB-1 50S ribosomal protein L18 YP_001666747.1 576134 D 76869 CDS YP_001666748.1 167031517 5868247 576488..576988 1 NC_010322.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 576988 rpsE 5868247 rpsE Pseudomonas putida GB-1 30S ribosomal protein S5 YP_001666748.1 576488 D 76869 CDS YP_001666749.1 167031518 5868248 576991..577167 1 NC_010322.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 577167 rpmD 5868248 rpmD Pseudomonas putida GB-1 50S ribosomal protein L30 YP_001666749.1 576991 D 76869 CDS YP_001666750.1 167031519 5868249 577171..577605 1 NC_010322.1 late assembly protein; 50S ribosomal protein L15 577605 rplO 5868249 rplO Pseudomonas putida GB-1 50S ribosomal protein L15 YP_001666750.1 577171 D 76869 CDS YP_001666751.1 167031520 5868250 577606..578937 1 NC_010322.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 578937 secY 5868250 secY Pseudomonas putida GB-1 preprotein translocase subunit SecY YP_001666751.1 577606 D 76869 CDS YP_001666752.1 167031521 5868251 579214..579570 1 NC_010322.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 579570 rpsM 5868251 rpsM Pseudomonas putida GB-1 30S ribosomal protein S13 YP_001666752.1 579214 D 76869 CDS YP_001666753.1 167031522 5868252 579589..579978 1 NC_010322.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 579978 5868252 PputGB1_0506 Pseudomonas putida GB-1 30S ribosomal protein S11 YP_001666753.1 579589 D 76869 CDS YP_001666754.1 167031523 5868253 579994..580614 1 NC_010322.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 580614 rpsD 5868253 rpsD Pseudomonas putida GB-1 30S ribosomal protein S4 YP_001666754.1 579994 D 76869 CDS YP_001666755.1 167031524 5868254 580637..581638 1 NC_010322.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 581638 5868254 PputGB1_0508 Pseudomonas putida GB-1 DNA-directed RNA polymerase subunit alpha YP_001666755.1 580637 D 76869 CDS YP_001666756.1 167031525 5868255 581681..582067 1 NC_010322.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 582067 rplQ 5868255 rplQ Pseudomonas putida GB-1 50S ribosomal protein L17 YP_001666756.1 581681 D 76869 CDS YP_001666757.1 167031526 5868256 582239..583678 1 NC_010322.1 PFAM: Catalase domain protein; KEGG: pen:PSEEN0517 catalase (hydroperoxidase II)KatA; catalase 583678 5868256 PputGB1_0510 Pseudomonas putida GB-1 catalase YP_001666757.1 582239 D 76869 CDS YP_001666758.1 167031527 5868257 583842..584306 1 NC_010322.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN0518 bacterioferritin; bacterioferritin 584306 5868257 PputGB1_0511 Pseudomonas putida GB-1 bacterioferritin YP_001666758.1 583842 D 76869 CDS YP_001666759.1 167031528 5868258 complement(584379..587213) 1 NC_010322.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 587213 uvrA 5868258 uvrA Pseudomonas putida GB-1 excinuclease ABC subunit A YP_001666759.1 584379 R 76869 CDS YP_001666760.1 167031529 5868259 587343..588737 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0520 transporter, MFS superfamily; major facilitator superfamily transporter 588737 5868259 PputGB1_0513 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001666760.1 587343 D 76869 CDS YP_001666761.1 167031530 5868260 588747..589292 1 NC_010322.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 589292 5868260 PputGB1_0514 Pseudomonas putida GB-1 single-stranded DNA-binding protein YP_001666761.1 588747 D 76869 CDS YP_001666762.1 167031531 5868261 589425..590711 1 NC_010322.1 PFAM: integrase family protein; KEGG: tcx:Tcr_0328 phage integrase; integrase family protein 590711 5868261 PputGB1_0515 Pseudomonas putida GB-1 integrase family protein YP_001666762.1 589425 D 76869 CDS YP_001666763.1 167031532 5868262 590704..592269 1 NC_010322.1 PFAM: integrase family protein; KEGG: prw:PsycPRwf_1125 phage integrase family protein; integrase family protein 592269 5868262 PputGB1_0516 Pseudomonas putida GB-1 integrase family protein YP_001666763.1 590704 D 76869 CDS YP_001666764.1 167031533 5868263 592259..594328 1 NC_010322.1 PFAM: integrase family protein; KEGG: tcx:Tcr_0330 putative integrase; integrase family protein 594328 5868263 PputGB1_0517 Pseudomonas putida GB-1 integrase family protein YP_001666764.1 592259 D 76869 CDS YP_001666765.1 167031534 5868264 594321..594785 1 NC_010322.1 KEGG: prw:PsycPRwf_1123 hypothetical protein; hypothetical protein 594785 5868264 PputGB1_0518 Pseudomonas putida GB-1 hypothetical protein YP_001666765.1 594321 D 76869 CDS YP_001666766.1 167031535 5868265 complement(594787..595062) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4630 transcriptional regulator, PbsX family; helix-turn-helix domain-containing protein 595062 5868265 PputGB1_0519 Pseudomonas putida GB-1 helix-turn-helix domain-containing protein YP_001666766.1 594787 R 76869 CDS YP_001666767.1 167031536 5868266 595148..595480 1 NC_010322.1 hypothetical protein 595480 5868266 PputGB1_0520 Pseudomonas putida GB-1 hypothetical protein YP_001666767.1 595148 D 76869 CDS YP_001666768.1 167031537 5868267 595525..595884 1 NC_010322.1 PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein 595884 5868267 PputGB1_0521 Pseudomonas putida GB-1 IS66 Orf2 family protein YP_001666768.1 595525 D 76869 CDS YP_001666769.1 167031538 5868268 595912..597432 1 NC_010322.1 PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 597432 5868268 PputGB1_0522 Pseudomonas putida GB-1 transposase IS66 YP_001666769.1 595912 D 76869 CDS YP_001666770.1 167031539 5868269 597636..598109 1 NC_010322.1 KEGG: pau:PA14_35850 hypothetical protein; hypothetical protein 598109 5868269 PputGB1_0523 Pseudomonas putida GB-1 hypothetical protein YP_001666770.1 597636 D 76869 CDS YP_001666771.1 167031540 5868270 complement(598260..599159) 1 NC_010322.1 KEGG: mmr:Mmar10_2162 hypothetical protein; hypothetical protein 599159 5868270 PputGB1_0524 Pseudomonas putida GB-1 hypothetical protein YP_001666771.1 598260 R 76869 CDS YP_001666772.1 167031541 5868271 complement(599225..600571) 1 NC_010322.1 KEGG: pmy:Pmen_4034 hypothetical protein; hypothetical protein 600571 5868271 PputGB1_0525 Pseudomonas putida GB-1 hypothetical protein YP_001666772.1 599225 R 76869 CDS YP_001666773.1 167031542 5868272 600943..602076 1 NC_010322.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mmr:Mmar10_2163 DNA (cytosine-5-)-methyltransferase; DNA-cytosine methyltransferase 602076 5868272 PputGB1_0526 Pseudomonas putida GB-1 DNA-cytosine methyltransferase YP_001666773.1 600943 D 76869 CDS YP_001666774.1 167031543 5868273 602085..603806 1 NC_010322.1 KEGG: mmr:Mmar10_2161 hypothetical protein; hypothetical protein 603806 5868273 PputGB1_0527 Pseudomonas putida GB-1 hypothetical protein YP_001666774.1 602085 D 76869 CDS YP_001666775.1 167031544 5868274 complement(603834..604250) 1 NC_010322.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: nha:Nham_2517 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr 604250 5868274 PputGB1_0528 Pseudomonas putida GB-1 DNA mismatch endonuclease Vsr YP_001666775.1 603834 R 76869 CDS YP_001666776.1 167031545 5868275 complement(604310..605011) 1 NC_010322.1 KEGG: ajs:Ajs_2206 hypothetical protein; hypothetical protein 605011 5868275 PputGB1_0529 Pseudomonas putida GB-1 hypothetical protein YP_001666776.1 604310 R 76869 CDS YP_001666777.1 167031546 5868276 complement(605099..606649) 1 NC_010322.1 KEGG: rfr:Rfer_0335 hypothetical protein; hypothetical protein 606649 5868276 PputGB1_0530 Pseudomonas putida GB-1 hypothetical protein YP_001666777.1 605099 R 76869 CDS YP_001666778.1 167031547 5868277 607390..607980 1 NC_010322.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN0563 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region 607980 5868277 PputGB1_0531 Pseudomonas putida GB-1 molybdopterin oxidoreductase Fe4S4 region YP_001666778.1 607390 D 76869 CDS YP_001666779.1 167031548 5868278 608029..610458 1 NC_010322.1 KEGG: pen:PSEEN0564 formate dehydrogenase-N major subunit, anaerobic; selenopeptide; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 610458 5868278 PputGB1_0532 Pseudomonas putida GB-1 formate dehydrogenase subunit alpha YP_001666779.1 608029 D 76869 CDS YP_001666780.1 167031549 5868279 610458..611408 1 NC_010322.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: pen:PSEEN0565 formate dehydrogenase-O, Fe-S subunit; formate dehydrogenase subunit beta 611408 5868279 PputGB1_0533 Pseudomonas putida GB-1 formate dehydrogenase subunit beta YP_001666780.1 610458 D 76869 CDS YP_001666781.1 167031550 5868280 611405..612061 1 NC_010322.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pen:PSEEN0566 formate dehydrogenase-O, cytochrome b556 (FDO) subunit; formate dehydrogenase subunit gamma 612061 5868280 PputGB1_0534 Pseudomonas putida GB-1 formate dehydrogenase subunit gamma YP_001666781.1 611405 D 76869 CDS YP_001666782.1 167031551 5868281 612066..612986 1 NC_010322.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: pen:PSEEN0567 formate dehydrogenase formation protein; formate dehydrogenase accessory protein FdhE 612986 5868281 PputGB1_0535 Pseudomonas putida GB-1 formate dehydrogenase accessory protein FdhE YP_001666782.1 612066 D 76869 CDS YP_001666783.1 167031552 5868282 613083..614510 1 NC_010322.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 614510 5868282 PputGB1_0536 Pseudomonas putida GB-1 selenocysteine synthase YP_001666783.1 613083 D 76869 CDS YP_001666784.1 167031553 5868283 614507..616429 1 NC_010322.1 TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: pen:PSEEN0569 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 616429 5868283 PputGB1_0537 Pseudomonas putida GB-1 selenocysteine-specific translation elongation factor YP_001666784.1 614507 D 76869 CDS YP_001666785.1 167031554 5868284 complement(616556..617554) 1 NC_010322.1 PFAM: Asparaginase/glutaminase; KEGG: pen:PSEEN0570 L-asparaginase, type I; asparaginase 617554 5868284 PputGB1_0538 Pseudomonas putida GB-1 asparaginase YP_001666785.1 616556 R 76869 CDS YP_001666786.1 167031555 5868285 complement(617617..619059) 1 NC_010322.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pen:PSEEN0571 sodium/alanine symporter; amino acid carrier protein 619059 5868285 PputGB1_0539 Pseudomonas putida GB-1 amino acid carrier protein YP_001666786.1 617617 R 76869 CDS YP_001666787.1 167031556 5868286 619237..620046 1 NC_010322.1 KEGG: pen:PSEEN0572 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator 620046 5868286 PputGB1_0540 Pseudomonas putida GB-1 Cro/CI family transcriptional regulator YP_001666787.1 619237 D 76869 CDS YP_001666788.1 167031557 5868287 complement(620057..620902) 1 NC_010322.1 KEGG: pen:PSEEN0573 hypothetical protein; hypothetical protein 620902 5868287 PputGB1_0541 Pseudomonas putida GB-1 hypothetical protein YP_001666788.1 620057 R 76869 CDS YP_001666789.1 167031558 5868288 complement(620911..621702) 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: nme:NMB0432 hypothetical protein; hypothetical protein 621702 5868288 PputGB1_0542 Pseudomonas putida GB-1 hypothetical protein YP_001666789.1 620911 R 76869 CDS YP_001666790.1 167031559 5868289 complement(621720..621911) 1 NC_010322.1 hypothetical protein 621911 5868289 PputGB1_0543 Pseudomonas putida GB-1 hypothetical protein YP_001666790.1 621720 R 76869 CDS YP_001666791.1 167031560 5868290 complement(621962..622759) 1 NC_010322.1 hypothetical protein 622759 5868290 PputGB1_0544 Pseudomonas putida GB-1 hypothetical protein YP_001666791.1 621962 R 76869 CDS YP_001666792.1 167031561 5868291 622975..623901 1 NC_010322.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0574 dTDP-4-rhamnose reductase-related protein; dTDP-4-dehydrorhamnose reductase 623901 5868291 PputGB1_0545 Pseudomonas putida GB-1 dTDP-4-dehydrorhamnose reductase YP_001666792.1 622975 D 76869 CDS YP_001666793.1 167031562 5868292 623894..624826 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pen:PSEEN0575 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 624826 5868292 PputGB1_0546 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001666793.1 623894 D 76869 CDS YP_001666794.1 167031563 5868293 complement(624855..625298) 1 NC_010322.1 PFAM: helix-turn-helix HxlR type; KEGG: pen:PSEEN0576 hypothetical protein; HxlR family transcriptional regulator 625298 5868293 PputGB1_0547 Pseudomonas putida GB-1 HxlR family transcriptional regulator YP_001666794.1 624855 R 76869 CDS YP_001666795.1 167031564 5868294 625400..626605 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0577 transport protein, MFS superfamily; major facilitator superfamily transporter 626605 5868294 PputGB1_0548 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001666795.1 625400 D 76869 CDS YP_001666796.1 167031565 5868295 complement(626593..627276) 1 NC_010322.1 PFAM: OmpW family protein; KEGG: pen:PSEEN0578 outer membrane protein OprG; OmpW family protein 627276 5868295 PputGB1_0549 Pseudomonas putida GB-1 OmpW family protein YP_001666796.1 626593 R 76869 CDS YP_001666797.1 167031566 5868296 complement(627386..627958) 1 NC_010322.1 KEGG: pen:PSEEN0579 lipoprotein; lipoprotein 627958 5868296 PputGB1_0550 Pseudomonas putida GB-1 lipoprotein YP_001666797.1 627386 R 76869 CDS YP_001666798.1 167031567 5868297 complement(627968..629233) 1 NC_010322.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein 629233 5868297 PputGB1_0551 Pseudomonas putida GB-1 hypothetical protein YP_001666798.1 627968 R 76869 CDS YP_001666799.1 167031568 5868298 complement(629233..629943) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein 629943 5868298 PputGB1_0552 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666799.1 629233 R 76869 CDS YP_001666800.1 167031569 5868299 complement(629944..630519) 1 NC_010322.1 KEGG: pen:PSEEN0582 hypothetical protein; hypothetical protein 630519 5868299 PputGB1_0553 Pseudomonas putida GB-1 hypothetical protein YP_001666800.1 629944 R 76869 CDS YP_001666801.1 167031570 5868300 630650..631009 1 NC_010322.1 KEGG: pen:PSEEN0583 hypothetical protein; hypothetical protein 631009 5868300 PputGB1_0554 Pseudomonas putida GB-1 hypothetical protein YP_001666801.1 630650 D 76869 CDS YP_001666802.1 167031571 5868301 631087..632571 1 NC_010322.1 hypothetical protein 632571 5868301 PputGB1_0555 Pseudomonas putida GB-1 hypothetical protein YP_001666802.1 631087 D 76869 CDS YP_001666803.1 167031572 5868302 complement(632633..633505) 1 NC_010322.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0584 thioredoxin; thioredoxin 633505 5868302 PputGB1_0556 Pseudomonas putida GB-1 thioredoxin YP_001666803.1 632633 R 76869 CDS YP_001666804.1 167031573 5868303 complement(633537..634196) 1 NC_010322.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN0585 hypothetical protein; type 12 methyltransferase 634196 5868303 PputGB1_0557 Pseudomonas putida GB-1 type 12 methyltransferase YP_001666804.1 633537 R 76869 CDS YP_001666805.1 167031574 5868304 complement(634197..634649) 1 NC_010322.1 KEGG: pen:PSEEN0586 hypothetical protein; hypothetical protein 634649 5868304 PputGB1_0558 Pseudomonas putida GB-1 hypothetical protein YP_001666805.1 634197 R 76869 CDS YP_001666806.1 167031575 5868305 634756..635220 1 NC_010322.1 PFAM: ATP-cone domain protein; KEGG: pen:PSEEN0587 hypothetical protein; transcriptional regulator NrdR 635220 nrdR 5868305 nrdR Pseudomonas putida GB-1 transcriptional regulator NrdR YP_001666806.1 634756 D 76869 CDS YP_001666807.1 167031576 5868306 635223..636353 1 NC_010322.1 KEGG: pen:PSEEN0588 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 636353 5868306 PputGB1_0560 Pseudomonas putida GB-1 riboflavin biosynthesis protein RibD YP_001666807.1 635223 D 76869 CDS YP_001666808.1 167031577 5868307 636397..637062 1 NC_010322.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 637062 5868307 PputGB1_0561 Pseudomonas putida GB-1 riboflavin synthase subunit alpha YP_001666808.1 636397 D 76869 CDS YP_001666809.1 167031578 5868308 637081..638172 1 NC_010322.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 638172 5868308 PputGB1_0562 Pseudomonas putida GB-1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001666809.1 637081 D 76869 CDS YP_001666810.1 167031579 5868309 638264..638740 1 NC_010322.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 638740 ribH 5868309 ribH Pseudomonas putida GB-1 6,7-dimethyl-8-ribityllumazine synthase YP_001666810.1 638264 D 76869 CDS YP_001666811.1 167031580 5868310 638737..639237 1 NC_010322.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 639237 nusB 5868310 nusB Pseudomonas putida GB-1 transcription antitermination protein NusB YP_001666811.1 638737 D 76869 CDS YP_001666812.1 167031581 5868311 639256..640224 1 NC_010322.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 640224 5868311 PputGB1_0565 Pseudomonas putida GB-1 thiamine monophosphate kinase YP_001666812.1 639256 D 76869 CDS YP_001666813.1 167031582 5868312 640221..640724 1 NC_010322.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pen:PSEEN0594 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 640724 5868312 PputGB1_0566 Pseudomonas putida GB-1 phosphatidylglycerophosphatase A YP_001666813.1 640221 D 76869 CDS YP_001666814.1 167031583 5868313 640741..641484 1 NC_010322.1 KEGG: pen:PSEEN0595 hypothetical protein; hypothetical protein 641484 5868313 PputGB1_0567 Pseudomonas putida GB-1 hypothetical protein YP_001666814.1 640741 D 76869 CDS YP_001666815.1 167031584 5868314 641614..642231 1 NC_010322.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 642231 ribA 5868314 ribA Pseudomonas putida GB-1 GTP cyclohydrolase II YP_001666815.1 641614 D 76869 CDS YP_001666816.1 167031585 5868315 642228..642647 1 NC_010322.1 KEGG: pen:PSEEN0597 hypothetical protein; hypothetical protein 642647 5868315 PputGB1_0569 Pseudomonas putida GB-1 hypothetical protein YP_001666816.1 642228 D 76869 CDS YP_001666817.1 167031586 5868316 642647..643459 1 NC_010322.1 PFAM: periplasmic binding protein; KEGG: pen:PSEEN0598 periplasmic cobalamin-binding protein HutB; periplasmic binding protein 643459 5868316 PputGB1_0570 Pseudomonas putida GB-1 periplasmic binding protein YP_001666817.1 642647 D 76869 CDS YP_001666818.1 167031587 5868317 complement(643437..645323) 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0599 cobalamine TonB-dependent receptor; TonB-dependent receptor plug 645323 5868317 PputGB1_0571 Pseudomonas putida GB-1 TonB-dependent receptor plug YP_001666818.1 643437 R 76869 CDS YP_001666819.1 167031588 5868318 complement(645434..647329) 1 NC_010322.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 647329 5868318 PputGB1_0572 Pseudomonas putida GB-1 1-deoxy-D-xylulose-5-phosphate synthase YP_001666819.1 645434 R 76869 CDS YP_001666820.1 167031589 5868319 complement(647436..648323) 1 NC_010322.1 PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0601 geranyltranstransferase; polyprenyl synthetase 648323 5868319 PputGB1_0573 Pseudomonas putida GB-1 polyprenyl synthetase YP_001666820.1 647436 R 76869 CDS YP_001666821.1 167031590 5868320 complement(648320..648562) 1 NC_010322.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 648562 5868320 PputGB1_0574 Pseudomonas putida GB-1 exodeoxyribonuclease VII small subunit YP_001666821.1 648320 R 76869 CDS YP_001666822.1 167031591 5868321 complement(648760..649410) 1 NC_010322.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 649410 ribB 5868321 ribB Pseudomonas putida GB-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001666822.1 648760 R 76869 CDS YP_001666823.1 167031592 5868322 649725..650930 1 NC_010322.1 PFAM: protein of unknown function UPF0027; KEGG: pen:PSEEN0615 hypothetical protein; hypothetical protein 650930 5868322 PputGB1_0576 Pseudomonas putida GB-1 hypothetical protein YP_001666823.1 649725 D 76869 CDS YP_001666824.1 167031593 5868323 complement(650967..651857) 1 NC_010322.1 PFAM: putative esterase; KEGG: pen:PSEEN0617 hypothetical protein; putative esterase 651857 5868323 PputGB1_0577 Pseudomonas putida GB-1 putative esterase YP_001666824.1 650967 R 76869 CDS YP_001666825.1 167031594 5868324 complement(651940..653286) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pae:PA2687 two-component sensor PfeS; integral membrane sensor signal transduction histidine kinase 653286 5868324 PputGB1_0578 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001666825.1 651940 R 76869 CDS YP_001666826.1 167031595 5868325 complement(653286..653978) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pae:PA2686 two-component response regulator PfeR; two component transcriptional regulator 653978 5868325 PputGB1_0579 Pseudomonas putida GB-1 two component transcriptional regulator YP_001666826.1 653286 R 76869 CDS YP_001666827.1 167031596 5868326 654161..656338 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: csa:Csal_2539 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 656338 5868326 PputGB1_0580 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666827.1 654161 D 76869 CDS YP_001666828.1 167031597 5868327 656627..657838 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1; glycosyl transferase group 1 protein 657838 5868327 PputGB1_0581 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001666828.1 656627 D 76869 CDS YP_001666829.1 167031598 5868328 complement(658113..658814) 1 NC_010322.1 KEGG: pen:PSEEN0625 transcriptional regulator; transcriptional regulator 658814 5868328 PputGB1_0582 Pseudomonas putida GB-1 transcriptional regulator YP_001666829.1 658113 R 76869 CDS YP_001666830.1 167031599 5868329 complement(659001..659528) 1 NC_010322.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 659528 5868329 PputGB1_0583 Pseudomonas putida GB-1 inorganic pyrophosphatase YP_001666830.1 659001 R 76869 CDS YP_001666831.1 167031600 5868330 complement(659622..660437) 1 NC_010322.1 PFAM: protein of unknown function DUF980; KEGG: pen:PSEEN0627 zinc-dependent peptidase (M family); hypothetical protein 660437 5868330 PputGB1_0584 Pseudomonas putida GB-1 hypothetical protein YP_001666831.1 659622 R 76869 CDS YP_001666832.1 167031601 5868331 complement(660459..661106) 1 NC_010322.1 PFAM: SNARE associated Golgi protein; KEGG: pen:PSEEN0628 hypothetical protein; hypothetical protein 661106 5868331 PputGB1_0585 Pseudomonas putida GB-1 hypothetical protein YP_001666832.1 660459 R 76869 CDS YP_001666833.1 167031602 5868332 complement(661294..661752) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0630 acetyltransferase, GNAT family; N-acetyltransferase GCN5 661752 5868332 PputGB1_0586 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001666833.1 661294 R 76869 CDS YP_001666834.1 167031603 5868333 complement(661861..662679) 1 NC_010322.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 662679 5868333 PputGB1_0587 Pseudomonas putida GB-1 ethanolamine ammonia-lyase small subunit YP_001666834.1 661861 R 76869 CDS YP_001666835.1 167031604 5868334 complement(662688..664082) 1 NC_010322.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pen:PSEEN0632 ethanolamine ammonia-lyase, heavy chain; ethanolamine ammonia lyase large subunit 664082 5868334 PputGB1_0588 Pseudomonas putida GB-1 ethanolamine ammonia lyase large subunit YP_001666835.1 662688 R 76869 CDS YP_001666836.1 167031605 5868335 complement(664129..665577) 1 NC_010322.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0633 transport protein; ethanolamine transporter 665577 5868335 PputGB1_0589 Pseudomonas putida GB-1 ethanolamine transporter YP_001666836.1 664129 R 76869 CDS YP_001666837.1 167031606 5868336 complement(665804..667324) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0634 NAD+ dependent aldehyde dehydrogenase; aldehyde dehydrogenase 667324 5868336 PputGB1_0590 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001666837.1 665804 R 76869 CDS YP_001666838.1 167031607 5868337 667579..669594 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0635 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 669594 5868337 PputGB1_0591 Pseudomonas putida GB-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001666838.1 667579 D 76869 CDS YP_001666839.1 167031608 5868338 669661..671010 1 NC_010322.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN0636 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate 671010 5868338 PputGB1_0592 Pseudomonas putida GB-1 UDP-N-acetylmuramate YP_001666839.1 669661 D 76869 CDS YP_001666840.1 167031609 5868339 671007..671636 1 NC_010322.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pen:PSEEN0637 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 671636 5868339 PputGB1_0593 Pseudomonas putida GB-1 aromatic acid decarboxylase YP_001666840.1 671007 D 76869 CDS YP_001666841.1 167031610 5868340 671633..671920 1 NC_010322.1 PFAM: protein of unknown function DUF1375; KEGG: pen:PSEEN0638 hypothetical protein; hypothetical protein 671920 5868340 PputGB1_0594 Pseudomonas putida GB-1 hypothetical protein YP_001666841.1 671633 D 76869 CDS YP_001666842.1 167031611 5868341 complement(671969..672613) 1 NC_010322.1 KEGG: pen:PSEEN4841 hypothetical protein; hypothetical protein 672613 5868341 PputGB1_0595 Pseudomonas putida GB-1 hypothetical protein YP_001666842.1 671969 R 76869 CDS YP_001666843.1 167031612 5868342 complement(672641..674374) 1 NC_010322.1 PFAM: Peptidase C13, legumain asparaginyl peptidase; MORN repeat-containing protein; KEGG: pen:PSEEN4840 hypothetical protein; peptidase C13, legumain asparaginyl peptidase 674374 5868342 PputGB1_0596 Pseudomonas putida GB-1 peptidase C13, legumain asparaginyl peptidase YP_001666843.1 672641 R 76869 CDS YP_001666844.1 167031613 5868343 complement(674601..675689) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pap:PSPA7_0934 2,3-butanediol dehydrogenase; alcohol dehydrogenase 675689 5868343 PputGB1_0597 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001666844.1 674601 R 76869 CDS YP_001666845.1 167031614 5868344 complement(675718..676824) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: pap:PSPA7_0935 probable hydrolase; branched-chain alpha-keto acid dehydrogenase subunit E2 676824 5868344 PputGB1_0598 Pseudomonas putida GB-1 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001666845.1 675718 R 76869 CDS YP_001666846.1 167031615 5868345 complement(676821..677843) 1 NC_010322.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pap:PSPA7_0936 acetoin catabolism protein AcoB; transketolase central region 677843 5868345 PputGB1_0599 Pseudomonas putida GB-1 transketolase central region YP_001666846.1 676821 R 76869 CDS YP_001666847.1 167031616 5868346 complement(677877..678854) 1 NC_010322.1 PFAM: dehydrogenase E1 component; KEGG: pfl:PFL_2170 acetoin dehydrogenase E1 component, alpha subunit; pyruvate dehydrogenase 678854 5868346 PputGB1_0600 Pseudomonas putida GB-1 pyruvate dehydrogenase YP_001666847.1 677877 R 76869 CDS YP_001666848.1 167031617 5868347 complement(678877..679932) 1 NC_010322.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pae:PA4149 hypothetical protein; ATP-NAD/AcoX kinase 679932 5868347 PputGB1_0601 Pseudomonas putida GB-1 ATP-NAD/AcoX kinase YP_001666848.1 678877 R 76869 CDS YP_001666849.1 167031618 5868348 680216..682069 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pap:PSPA7_0941 transcriptional regulator AcoR; Fis family GAF modulated sigma54 specific transcriptional regulator 682069 5868348 PputGB1_0602 Pseudomonas putida GB-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001666849.1 680216 D 76869 CDS YP_001666850.1 167031619 5868349 complement(682160..683515) 1 NC_010322.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 683515 5868349 PputGB1_0603 Pseudomonas putida GB-1 acetyl-CoA carboxylase biotin carboxylase subunit YP_001666850.1 682160 R 76869 CDS YP_001666851.1 167031620 5868350 complement(683533..683994) 1 NC_010322.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 683994 5868350 PputGB1_0604 Pseudomonas putida GB-1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001666851.1 683533 R 76869 CDS YP_001666852.1 167031621 5868351 complement(684094..684549) 1 NC_010322.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 684549 5868351 PputGB1_0605 Pseudomonas putida GB-1 3-dehydroquinate dehydratase YP_001666852.1 684094 R 76869 CDS YP_001666853.1 167031622 5868352 complement(684729..686501) 1 NC_010322.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 686501 dipZ 5868352 dipZ Pseudomonas putida GB-1 thiol:disulfide interchange protein YP_001666853.1 684729 R 76869 CDS YP_001666854.1 167031623 5868353 complement(686843..688804) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4853 methyl-accepting chemotaxis transducer for inorganic phosphate CtpL; methyl-accepting chemotaxis sensory transducer 688804 5868353 PputGB1_0607 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001666854.1 686843 R 76869 CDS YP_001666855.1 167031624 5868354 complement(688929..690287) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN4852 diguanylate cyclase (GGDEF domain)/response regulator; response regulator receiver modulated diguanylate cyclase 690287 5868354 PputGB1_0608 Pseudomonas putida GB-1 response regulator receiver modulated diguanylate cyclase YP_001666855.1 688929 R 76869 CDS YP_001666856.1 167031625 5868355 690536..691603 1 NC_010322.1 KEGG: pen:PSEEN4851 hypothetical protein; hypothetical protein 691603 5868355 PputGB1_0609 Pseudomonas putida GB-1 hypothetical protein YP_001666856.1 690536 D 76869 CDS YP_001666857.1 167031626 5868356 691606..692142 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4850 IPP isomerase type 1; NUDIX hydrolase 692142 5868356 PputGB1_0610 Pseudomonas putida GB-1 NUDIX hydrolase YP_001666857.1 691606 D 76869 CDS YP_001666858.1 167031627 5868357 692470..692841 1 NC_010322.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 692841 5868357 PputGB1_0611 Pseudomonas putida GB-1 translation initiation factor Sui1 YP_001666858.1 692470 D 76869 CDS YP_001666859.1 167031628 5868358 692993..694906 1 NC_010322.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 694906 5868358 PputGB1_0612 Pseudomonas putida GB-1 arginine decarboxylase YP_001666859.1 692993 D 76869 CDS YP_001666860.1 167031629 5868359 695118..695573 1 NC_010322.1 KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein 695573 5868359 PputGB1_0613 Pseudomonas putida GB-1 hypothetical protein YP_001666860.1 695118 D 76869 CDS YP_001666861.1 167031630 5868360 complement(695662..696999) 1 NC_010322.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; MATE efflux family protein 696999 5868360 PputGB1_0614 Pseudomonas putida GB-1 MATE efflux family protein YP_001666861.1 695662 R 76869 CDS YP_001666862.1 167031631 5868361 697178..702076 1 NC_010322.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pen:PSEEN4844 hypothetical protein; alpha-2-macroglobulin domain-containing protein 702076 5868361 PputGB1_0615 Pseudomonas putida GB-1 alpha-2-macroglobulin domain-containing protein YP_001666862.1 697178 D 76869 CDS YP_001666863.1 167031632 5868362 complement(702241..702534) 1 NC_010322.1 KEGG: pen:PSEEN4843 hypothetical protein; hypothetical protein 702534 5868362 PputGB1_0616 Pseudomonas putida GB-1 hypothetical protein YP_001666863.1 702241 R 76869 CDS YP_001666864.1 167031633 5868363 702612..704966 1 NC_010322.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 704966 5868363 PputGB1_0617 Pseudomonas putida GB-1 penicillin-binding protein 1C YP_001666864.1 702612 D 76869 CDS YP_001666865.1 167031634 5868364 705059..706723 1 NC_010322.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pen:PSEEN0640 hypothetical protein; polypeptide-transport-associated domain-containing protein 706723 5868364 PputGB1_0618 Pseudomonas putida GB-1 polypeptide-transport-associated domain-containing protein YP_001666865.1 705059 D 76869 CDS YP_001666866.1 167031635 5868365 complement(706763..707539) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN0653 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 707539 5868365 PputGB1_0619 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001666866.1 706763 R 76869 CDS YP_001666867.1 167031636 5868366 complement(707659..708129) 1 NC_010322.1 PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV 708129 5868366 PputGB1_0620 Pseudomonas putida GB-1 peptidase A24A prepilin type IV YP_001666867.1 707659 R 76869 CDS YP_001666868.1 167031637 5868367 complement(708343..708912) 1 NC_010322.1 KEGG: pen:PSEEN0658 lipoprotein; lipoprotein 708912 5868367 PputGB1_0621 Pseudomonas putida GB-1 lipoprotein YP_001666868.1 708343 R 76869 CDS YP_001666869.1 167031638 5868368 complement(708932..709567) 1 NC_010322.1 KEGG: pen:PSEEN0659 lipoprotein; hypothetical protein 709567 5868368 PputGB1_0622 Pseudomonas putida GB-1 hypothetical protein YP_001666869.1 708932 R 76869 CDS YP_001666870.1 167031639 5868369 complement(709590..710339) 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0660 methyltransferase; type 12 methyltransferase 710339 5868369 PputGB1_0623 Pseudomonas putida GB-1 type 12 methyltransferase YP_001666870.1 709590 R 76869 CDS YP_001666871.1 167031640 5868370 complement(710336..710641) 1 NC_010322.1 KEGG: pen:PSEEN0661 hypothetical protein; hypothetical protein 710641 5868370 PputGB1_0624 Pseudomonas putida GB-1 hypothetical protein YP_001666871.1 710336 R 76869 CDS YP_001666872.1 167031641 5868371 complement(710700..711551) 1 NC_010322.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN0662 hypothetical protein; dehydratase 711551 5868371 PputGB1_0625 Pseudomonas putida GB-1 dehydratase YP_001666872.1 710700 R 76869 CDS YP_001666873.1 167031642 5868372 complement(711554..712906) 1 NC_010322.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 712906 fabG 5868372 fabG Pseudomonas putida GB-1 3-ketoacyl-ACP reductase YP_001666873.1 711554 R 76869 CDS YP_001666874.1 167031643 5868373 713024..714301 1 NC_010322.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 714301 5868373 PputGB1_0627 Pseudomonas putida GB-1 acetyl-CoA acetyltransferase YP_001666874.1 713024 D 76869 CDS YP_001666875.1 167031644 5868374 714368..715147 1 NC_010322.1 PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN0665 transcriptional regulator, AraC family; AraC family transcriptional regulator 715147 5868374 PputGB1_0628 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001666875.1 714368 D 76869 CDS YP_001666876.1 167031645 5868375 complement(715213..717156) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0666 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 717156 5868375 PputGB1_0629 Pseudomonas putida GB-1 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001666876.1 715213 R 76869 CDS YP_001666877.1 167031646 5868376 complement(717325..717735) 1 NC_010322.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN0668 transcription regulator heavy metal-dependent MerE family; MerR family transcriptional regulator 717735 5868376 PputGB1_0630 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001666877.1 717325 R 76869 CDS YP_001666878.1 167031647 5868377 complement(717732..720134) 1 NC_010322.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN0669 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 720134 5868377 PputGB1_0631 Pseudomonas putida GB-1 heavy metal translocating P-type ATPase YP_001666878.1 717732 R 76869 CDS YP_001666879.1 167031648 5868378 complement(720187..720573) 1 NC_010322.1 KEGG: pen:PSEEN0670 hypothetical protein; hypothetical protein 720573 5868378 PputGB1_0632 Pseudomonas putida GB-1 hypothetical protein YP_001666879.1 720187 R 76869 CDS YP_001666880.1 167031649 5868379 720717..720914 1 NC_010322.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pen:PSEEN0671 copper-binding protein; heavy metal transport/detoxification protein 720914 5868379 PputGB1_0633 Pseudomonas putida GB-1 heavy metal transport/detoxification protein YP_001666880.1 720717 D 76869 CDS YP_001666881.1 167031650 5868380 721023..722204 1 NC_010322.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 722204 5868380 PputGB1_0634 Pseudomonas putida GB-1 Bcr/CflA subfamily drug resistance transporter YP_001666881.1 721023 D 76869 CDS YP_001666882.1 167031651 5868381 722840..723553 1 NC_010322.1 SMART: regulatory protein ArsR; KEGG: pen:PSEEN0673 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 723553 5868381 PputGB1_0635 Pseudomonas putida GB-1 ArsR family transcriptional regulator YP_001666882.1 722840 D 76869 CDS YP_001666883.1 167031652 5868382 complement(723574..724521) 1 NC_010322.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 724521 5868382 PputGB1_0636 Pseudomonas putida GB-1 adenosine deaminase YP_001666883.1 723574 R 76869 CDS YP_001666884.1 167031653 5868383 complement(724608..725294) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN0676 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 725294 5868383 PputGB1_0637 Pseudomonas putida GB-1 short chain dehydrogenase YP_001666884.1 724608 R 76869 CDS YP_001666885.1 167031654 5868384 complement(725665..726249) 1 NC_010322.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: pen:PSEEN0678 hypothetical protein; hypothetical protein 726249 5868384 PputGB1_0638 Pseudomonas putida GB-1 hypothetical protein YP_001666885.1 725665 R 76869 CDS YP_001666886.1 167031655 5868385 complement(726259..726921) 1 NC_010322.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN0679 transcriptional regulator, TetR/AcrR family; TetR family transcriptional regulator 726921 5868385 PputGB1_0639 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001666886.1 726259 R 76869 CDS YP_001666887.1 167031656 5868386 complement(727012..727929) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0680 transcriptional regulator, LysR family; LysR family transcriptional regulator 727929 5868386 PputGB1_0640 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666887.1 727012 R 76869 CDS YP_001666888.1 167031657 5868387 728048..729394 1 NC_010322.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 729394 5868387 PputGB1_0641 Pseudomonas putida GB-1 beta alanine--pyruvate transaminase YP_001666888.1 728048 D 76869 CDS YP_001666889.1 167031658 5868388 729468..730961 1 NC_010322.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0682 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 730961 5868388 PputGB1_0642 Pseudomonas putida GB-1 methylmalonate-semialdehyde dehydrogenase YP_001666889.1 729468 D 76869 CDS YP_001666890.1 167031659 5868394 736880..737539 1 NC_010322.1 PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4698 paraquat-inducible protein A; paraquat-inducible protein A 737539 5868394 PputGB1_0643 Pseudomonas putida GB-1 paraquat-inducible protein A YP_001666890.1 736880 D 76869 CDS YP_001666891.1 167031660 5868395 737526..738149 1 NC_010322.1 PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4697 paraquat-inducible protein A; paraquat-inducible protein A 738149 5868395 PputGB1_0644 Pseudomonas putida GB-1 paraquat-inducible protein A YP_001666891.1 737526 D 76869 CDS YP_001666892.1 167031661 5868396 738133..740442 1 NC_010322.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN4696 paraquat-inducible protein B; hypothetical protein 740442 5868396 PputGB1_0645 Pseudomonas putida GB-1 hypothetical protein YP_001666892.1 738133 D 76869 CDS YP_001666893.1 167031662 5868397 complement(740596..740874) 1 NC_010322.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 740874 rpsT 5868397 rpsT Pseudomonas putida GB-1 30S ribosomal protein S20 YP_001666893.1 740596 R 76869 CDS YP_001666894.1 167031663 5868398 741125..742663 1 NC_010322.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pen:PSEEN4694 virulence factor MviN family; integral membrane protein MviN 742663 5868398 PputGB1_0647 Pseudomonas putida GB-1 integral membrane protein MviN YP_001666894.1 741125 D 76869 CDS YP_001666895.1 167031664 5868399 742764..743732 1 NC_010322.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 743732 5868399 PputGB1_0648 Pseudomonas putida GB-1 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001666895.1 742764 D 76869 CDS YP_001666896.1 167031665 5868400 743729..746560 1 NC_010322.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 746560 ileS 5868400 ileS Pseudomonas putida GB-1 isoleucyl-tRNA synthetase YP_001666896.1 743729 D 76869 CDS YP_001666897.1 167031666 5868401 746553..747068 1 NC_010322.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 747068 lspA 5868401 lspA Pseudomonas putida GB-1 lipoprotein signal peptidase YP_001666897.1 746553 D 76869 CDS YP_001666898.1 167031667 5868402 747061..747498 1 NC_010322.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN4690 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 747498 5868402 PputGB1_0651 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001666898.1 747061 D 76869 CDS YP_001666899.1 167031668 5868403 747513..748460 1 NC_010322.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 748460 ispH 5868403 ispH Pseudomonas putida GB-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001666899.1 747513 D 76869 CDS YP_001666900.1 167031669 5868404 complement(748461..748946) 1 NC_010322.1 KEGG: pen:PSEEN4688 type IV pili biogenesis protein FimT; type IV pili biogenesis protein FimT 748946 5868404 PputGB1_0653 Pseudomonas putida GB-1 type IV pili biogenesis protein FimT YP_001666900.1 748461 R 76869 CDS YP_001666901.1 167031670 5868405 749077..749238 1 NC_010322.1 KEGG: pen:PSEEN4687 hypothetical protein; hypothetical protein 749238 5868405 PputGB1_0654 Pseudomonas putida GB-1 hypothetical protein YP_001666901.1 749077 D 76869 CDS YP_001666902.1 167031671 5868406 749235..749876 1 NC_010322.1 KEGG: pen:PSEEN4686 hypothetical protein; hypothetical protein 749876 5868406 PputGB1_0655 Pseudomonas putida GB-1 hypothetical protein YP_001666902.1 749235 D 76869 CDS YP_001666903.1 167031672 5868407 749873..750316 1 NC_010322.1 KEGG: pen:PSEEN4685 hypothetical protein; hypothetical protein 750316 5868407 PputGB1_0656 Pseudomonas putida GB-1 hypothetical protein YP_001666903.1 749873 D 76869 CDS YP_001666904.1 167031673 5868408 750318..750707 1 NC_010322.1 KEGG: pen:PSEEN4684 type IV pili biogenesis protein PilE; type IV pili biogenesis protein PilE 750707 5868408 PputGB1_0657 Pseudomonas putida GB-1 type IV pili biogenesis protein PilE YP_001666904.1 750318 D 76869 CDS YP_001666905.1 167031674 5868409 750762..751859 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4683 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 751859 5868409 PputGB1_0658 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001666905.1 750762 D 76869 CDS YP_001666906.1 167031675 5868410 complement(751973..753382) 1 NC_010322.1 PFAM: Amidase; KEGG: pfl:PFL_3680 hypothetical protein; putative amidase 753382 5868410 PputGB1_0659 Pseudomonas putida GB-1 putative amidase YP_001666906.1 751973 R 76869 CDS YP_001666907.1 167031676 5868411 complement(753384..754661) 1 NC_010322.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 754661 5868411 PputGB1_0660 Pseudomonas putida GB-1 allantoate amidohydrolase YP_001666907.1 753384 R 76869 CDS YP_001666908.1 167031677 5868412 complement(754675..755370) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 755370 5868412 PputGB1_0661 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666908.1 754675 R 76869 CDS YP_001666909.1 167031678 5868413 complement(755370..756125) 1 NC_010322.1 PFAM: ABC transporter related; KEGG: pfl:PFL_3677 branched-chain amino acid ABC transporter, ATP binding protein; ABC transporter-like protein 756125 5868413 PputGB1_0662 Pseudomonas putida GB-1 ABC transporter-like protein YP_001666909.1 755370 R 76869 CDS YP_001666910.1 167031679 5868414 complement(756122..757141) 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pfl:PFL_3676 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 757141 5868414 PputGB1_0663 Pseudomonas putida GB-1 inner-membrane translocator YP_001666910.1 756122 R 76869 CDS YP_001666911.1 167031680 5868415 complement(757143..758003) 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pfl:PFL_3675 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 758003 5868415 PputGB1_0664 Pseudomonas putida GB-1 inner-membrane translocator YP_001666911.1 757143 R 76869 CDS YP_001666912.1 167031681 5868416 complement(758069..759271) 1 NC_010322.1 KEGG: pfl:PFL_3674 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; branched chain amino acid ABC transporter substrate-binding protein 759271 5868416 PputGB1_0665 Pseudomonas putida GB-1 branched chain amino acid ABC transporter substrate-binding protein YP_001666912.1 758069 R 76869 CDS YP_001666913.1 167031682 5868417 complement(759362..760141) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3673 transcriptional regulator, GntR family; regulatory protein GntR HTH 760141 5868417 PputGB1_0666 Pseudomonas putida GB-1 regulatory protein GntR HTH YP_001666913.1 759362 R 76869 CDS YP_001666914.1 167031683 5868418 complement(760311..760541) 1 NC_010322.1 KEGG: pen:PSEEN4682 hypothetical protein; hypothetical protein 760541 5868418 PputGB1_0667 Pseudomonas putida GB-1 hypothetical protein YP_001666914.1 760311 R 76869 CDS YP_001666915.1 167031684 5868419 complement(760636..761655) 1 NC_010322.1 KEGG: pen:PSEEN4681 competence lipoprotein ComL; competence lipoprotein ComL 761655 5868419 PputGB1_0668 Pseudomonas putida GB-1 competence lipoprotein ComL YP_001666915.1 760636 R 76869 CDS YP_001666916.1 167031685 5868420 761707..762765 1 NC_010322.1 KEGG: pen:PSEEN4680 23S rRNA pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 762765 5868420 PputGB1_0669 Pseudomonas putida GB-1 RluA family pseudouridine synthase YP_001666916.1 761707 D 76869 CDS YP_001666917.1 167031686 5868421 762762..763502 1 NC_010322.1 PFAM: protein of unknown function DUF152; KEGG: pen:PSEEN4679 hypothetical protein; hypothetical protein 763502 5868421 PputGB1_0670 Pseudomonas putida GB-1 hypothetical protein YP_001666917.1 762762 D 76869 CDS YP_001666918.1 167031687 5868422 763642..766206 1 NC_010322.1 KEGG: pen:PSEEN4678 ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 766206 5868422 PputGB1_0671 Pseudomonas putida GB-1 ATP-dependent chaperone ClpB YP_001666918.1 763642 D 76869 CDS YP_001666919.1 167031688 5868428 complement(767163..768458) 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN4675 NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 768458 5868428 PputGB1_0672 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001666919.1 767163 R 76869 CDS YP_001666920.1 167031689 5868429 complement(768543..768716) 1 NC_010322.1 KEGG: pen:PSEEN4674 hypothetical protein; hypothetical protein 768716 5868429 PputGB1_0673 Pseudomonas putida GB-1 hypothetical protein YP_001666920.1 768543 R 76869 CDS YP_001666921.1 167031690 5868430 complement(768849..769478) 1 NC_010322.1 PFAM: Protein of unknown function DUF1780; KEGG: pen:PSEEN4673 hypothetical protein; hypothetical protein 769478 5868430 PputGB1_0674 Pseudomonas putida GB-1 hypothetical protein YP_001666921.1 768849 R 76869 CDS YP_001666922.1 167031691 5868431 769576..770259 1 NC_010322.1 KEGG: pen:PSEEN4671 hypothetical protein; hypothetical protein 770259 5868431 PputGB1_0675 Pseudomonas putida GB-1 hypothetical protein YP_001666922.1 769576 D 76869 CDS YP_001666923.1 167031692 5868432 complement(770471..770671) 1 NC_010322.1 PFAM: protein of unknown function DUF329; KEGG: pen:PSEEN4670 hypothetical protein; zinc-binding protein 770671 5868432 PputGB1_0676 Pseudomonas putida GB-1 zinc-binding protein YP_001666923.1 770471 R 76869 CDS YP_001666924.1 167031693 5868433 complement(770668..771291) 1 NC_010322.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 771291 coaE 5868433 coaE Pseudomonas putida GB-1 dephospho-CoA kinase YP_001666924.1 770668 R 76869 CDS YP_001666925.1 167031694 5868434 complement(771291..772157) 1 NC_010322.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: pen:PSEEN4668 type IV pili prepilin peptidase PilD/XcpA; prepilin peptidase 772157 5868434 PputGB1_0678 Pseudomonas putida GB-1 prepilin peptidase YP_001666925.1 771291 R 76869 CDS YP_001666926.1 167031695 5868436 773584..773994 1 NC_010322.1 PFAM: Fimbrial protein pilin; KEGG: pen:PSEEN4666 type IV pili prepilin PilA; fimbrial protein pilin 773994 5868436 PputGB1_0680 Pseudomonas putida GB-1 fimbrial protein pilin YP_001666926.1 773584 D 76869 CDS YP_001666927.1 167031696 5868438 774308..775513 1 NC_010322.1 PFAM: integrase family protein; KEGG: psa:PST_0259 site-specific recombinase, phage integrase family; integrase family protein 775513 5868438 PputGB1_0681 Pseudomonas putida GB-1 integrase family protein YP_001666927.1 774308 D 76869 CDS YP_001666928.1 167031697 5868439 775506..776255 1 NC_010322.1 hypothetical protein 776255 5868439 PputGB1_0682 Pseudomonas putida GB-1 hypothetical protein YP_001666928.1 775506 D 76869 CDS YP_001666929.1 167031698 5868440 776374..776583 1 NC_010322.1 PFAM: Prophage CP4-57 regulatory; KEGG: sbo:SBO_4169 hypothetical protein; phage transcriptional regulator AlpA 776583 5868440 PputGB1_0683 Pseudomonas putida GB-1 phage transcriptional regulator AlpA YP_001666929.1 776374 D 76869 CDS YP_001666930.1 167031699 5868441 776862..777506 1 NC_010322.1 KEGG: tbd:Tbd_0930 hypothetical protein; hypothetical protein 777506 5868441 PputGB1_0684 Pseudomonas putida GB-1 hypothetical protein YP_001666930.1 776862 D 76869 CDS YP_001666931.1 167031700 5868442 complement(777832..778269) 1 NC_010322.1 hypothetical protein 778269 5868442 PputGB1_0685 Pseudomonas putida GB-1 hypothetical protein YP_001666931.1 777832 R 76869 CDS YP_001666932.1 167031701 5868443 complement(778305..779192) 1 NC_010322.1 KEGG: sbl:Sbal_4432 phage integrase family protein; phage integrase family protein 779192 5868443 PputGB1_0686 Pseudomonas putida GB-1 phage integrase family protein YP_001666932.1 778305 R 76869 CDS YP_001666933.1 167031702 5868444 780340..782280 1 NC_010322.1 KEGG: fal:FRAAL5314 putative transmembrane efflux protein; hypothetical protein 782280 5868444 PputGB1_0687 Pseudomonas putida GB-1 hypothetical protein YP_001666933.1 780340 D 76869 CDS YP_001666934.1 167031703 5868445 783153..783689 1 NC_010322.1 hypothetical protein 783689 5868445 PputGB1_0688 Pseudomonas putida GB-1 hypothetical protein YP_001666934.1 783153 D 76869 CDS YP_001666935.1 167031704 5868446 complement(783809..784414) 1 NC_010322.1 hypothetical protein 784414 5868446 PputGB1_0689 Pseudomonas putida GB-1 hypothetical protein YP_001666935.1 783809 R 76869 CDS YP_001666936.1 167031705 5868447 785005..785511 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2529 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 785511 5868447 PputGB1_0690 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666936.1 785005 D 76869 CDS YP_001666937.1 167031706 5868448 785508..786506 1 NC_010322.1 PFAM: FecR protein; KEGG: pfl:PFL_2528 sigma factor regulatory protein PupR; anti-FecI sigma factor FecR 786506 5868448 PputGB1_0691 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666937.1 785508 D 76869 CDS YP_001666938.1 167031707 5868449 786589..788994 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2527 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 788994 5868449 PputGB1_0692 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666938.1 786589 D 76869 CDS YP_001666939.1 167031708 5868450 complement(789205..791649) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2391 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 791649 5868450 PputGB1_0693 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666939.1 789205 R 76869 CDS YP_001666940.1 167031709 5868451 complement(791778..792734) 1 NC_010322.1 PFAM: FecR protein; KEGG: pfl:PFL_0146 sigma factor regulatory protein, FecR/PupR family; anti-FecI sigma factor FecR 792734 5868451 PputGB1_0694 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666940.1 791778 R 76869 CDS YP_001666941.1 167031710 5868452 complement(792731..793237) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_0145 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 793237 5868452 PputGB1_0695 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666941.1 792731 R 76869 CDS YP_001666942.1 167031711 5868453 complement(793379..794764) 1 NC_010322.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pfo:Pfl_2796 gluconate transporter; gluconate transporter 794764 5868453 PputGB1_0696 Pseudomonas putida GB-1 gluconate transporter YP_001666942.1 793379 R 76869 CDS YP_001666943.1 167031712 5868454 795099..796028 1 NC_010322.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 796028 5868454 PputGB1_0697 Pseudomonas putida GB-1 malate dehydrogenase YP_001666943.1 795099 D 76869 CDS YP_001666944.1 167031713 5868455 796120..796275 1 NC_010322.1 hypothetical protein 796275 5868455 PputGB1_0698 Pseudomonas putida GB-1 hypothetical protein YP_001666944.1 796120 D 76869 CDS YP_001666945.1 167031714 5868456 796315..796812 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_1832 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 796812 5868456 PputGB1_0699 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666945.1 796315 D 76869 CDS YP_001666946.1 167031715 5868457 796818..797747 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 797747 5868457 PputGB1_0700 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666946.1 796818 D 76869 CDS YP_001666947.1 167031716 5868458 797879..800215 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA; TonB-dependent siderophore receptor 800215 5868458 PputGB1_0701 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666947.1 797879 D 76869 CDS YP_001666948.1 167031717 5868459 complement(800267..801220) 1 NC_010322.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN4637 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 801220 5868459 PputGB1_0702 Pseudomonas putida GB-1 bile acid:sodium symporter YP_001666948.1 800267 R 76869 CDS YP_001666949.1 167031718 5868460 complement(801465..802718) 1 NC_010322.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 802718 glyA 5868460 glyA Pseudomonas putida GB-1 serine hydroxymethyltransferase YP_001666949.1 801465 R 76869 CDS YP_001666950.1 167031719 5868461 complement(802912..806742) 1 NC_010322.1 KEGG: pen:PSEEN0807 sensory box protein(GGDEF domain/EAL domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 806742 5868461 PputGB1_0704 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001666950.1 802912 R 76869 CDS YP_001666951.1 167031720 5868462 806991..807404 1 NC_010322.1 KEGG: pen:PSEEN0809 hypothetical protein; hypothetical protein 807404 5868462 PputGB1_0705 Pseudomonas putida GB-1 hypothetical protein YP_001666951.1 806991 D 76869 CDS YP_001666952.1 167031721 5868463 807705..809372 1 NC_010322.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 809372 5868463 PputGB1_0706 Pseudomonas putida GB-1 putative ABC transporter ATP-binding protein YP_001666952.1 807705 D 76869 CDS YP_001666953.1 167031722 5868464 809594..810934 1 NC_010322.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 810934 5868464 PputGB1_0707 Pseudomonas putida GB-1 glutamate dehydrogenase YP_001666953.1 809594 D 76869 CDS YP_001666954.1 167031723 5868465 complement(811123..811620) 1 NC_010322.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pen:PSEEN0813 transcription elongation factor; GreA/GreB family elongation factor 811620 5868465 PputGB1_0708 Pseudomonas putida GB-1 GreA/GreB family elongation factor YP_001666954.1 811123 R 76869 CDS YP_001666955.1 167031724 5868466 complement(811688..812044) 1 NC_010322.1 KEGG: pen:PSEEN0814 lipoprotein; lipoprotein 812044 5868466 PputGB1_0709 Pseudomonas putida GB-1 lipoprotein YP_001666955.1 811688 R 76869 CDS YP_001666956.1 167031725 5868467 complement(812300..814153) 1 NC_010322.1 KEGG: pen:PSEEN0815 hypothetical protein; hypothetical protein 814153 5868467 PputGB1_0710 Pseudomonas putida GB-1 hypothetical protein YP_001666956.1 812300 R 76869 CDS YP_001666957.1 167031726 5868468 complement(814225..814713) 1 NC_010322.1 KEGG: pen:PSEEN0816 hypothetical protein; hypothetical protein 814713 5868468 PputGB1_0711 Pseudomonas putida GB-1 hypothetical protein YP_001666957.1 814225 R 76869 CDS YP_001666958.1 167031727 5868469 814975..817413 1 NC_010322.1 PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN0817 ATP-dependent protease; peptidase S16 lon domain-containing protein 817413 5868469 PputGB1_0712 Pseudomonas putida GB-1 peptidase S16 lon domain-containing protein YP_001666958.1 814975 D 76869 CDS YP_001666959.1 167031728 5868470 817574..817912 1 NC_010322.1 KEGG: pen:PSEEN0818 hypothetical protein; hypothetical protein 817912 5868470 PputGB1_0713 Pseudomonas putida GB-1 hypothetical protein YP_001666959.1 817574 D 76869 CDS YP_001666960.1 167031729 5868471 818022..818510 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0819 hypothetical protein; hypothetical protein 818510 5868471 PputGB1_0714 Pseudomonas putida GB-1 hypothetical protein YP_001666960.1 818022 D 76869 CDS YP_001666961.1 167031730 5868472 818639..818944 1 NC_010322.1 KEGG: pen:PSEEN0820 hypothetical protein; hypothetical protein 818944 5868472 PputGB1_0715 Pseudomonas putida GB-1 hypothetical protein YP_001666961.1 818639 D 76869 CDS YP_001666962.1 167031731 5868473 819030..819647 1 NC_010322.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0821 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 819647 5868473 PputGB1_0716 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001666962.1 819030 D 76869 CDS YP_001666963.1 167031732 5868474 complement(819776..820021) 1 NC_010322.1 KEGG: pen:PSEEN0822 hypothetical protein; hypothetical protein 820021 5868474 PputGB1_0717 Pseudomonas putida GB-1 hypothetical protein YP_001666963.1 819776 R 76869 CDS YP_001666964.1 167031733 5868475 complement(820106..820444) 1 NC_010322.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pen:PSEEN0823 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 820444 5868475 PputGB1_0718 Pseudomonas putida GB-1 alkylphosphonate utilization operon protein PhnA YP_001666964.1 820106 R 76869 CDS YP_001666965.1 167031734 5868476 complement(820612..821580) 1 NC_010322.1 PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0824 octaprenyl-diphosphate synthase; polyprenyl synthetase 821580 5868476 PputGB1_0719 Pseudomonas putida GB-1 polyprenyl synthetase YP_001666965.1 820612 R 76869 CDS YP_001666966.1 167031735 5868477 821825..822139 1 NC_010322.1 PFAM: ribosomal protein L21; KEGG: pen:PSEEN0825 50S ribosomal subunit protein L21; 50S ribosomal protein L21 822139 rplU 5868477 rplU Pseudomonas putida GB-1 50S ribosomal protein L21 YP_001666966.1 821825 D 76869 CDS YP_001666967.1 167031736 5868478 822178..822435 1 NC_010322.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 822435 rpmA 5868478 rpmA Pseudomonas putida GB-1 50S ribosomal protein L27 YP_001666967.1 822178 D 76869 CDS YP_001666968.1 167031737 5868479 822624..823850 1 NC_010322.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 823850 obgE 5868479 obgE Pseudomonas putida GB-1 GTPase ObgE YP_001666968.1 822624 D 76869 CDS YP_001666969.1 167031738 5868480 823936..825054 1 NC_010322.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 825054 5868480 PputGB1_0723 Pseudomonas putida GB-1 gamma-glutamyl kinase YP_001666969.1 823936 D 76869 CDS YP_001666970.1 167031739 5868481 825051..825512 1 NC_010322.1 PFAM: CreA family protein; KEGG: pfo:Pfl_4856 CreA; CreA family protein 825512 5868481 PputGB1_0724 Pseudomonas putida GB-1 CreA family protein YP_001666970.1 825051 D 76869 CDS YP_001666971.1 167031740 5868482 complement(825617..828448) 1 NC_010322.1 KEGG: pen:PSEEN0831 hypothetical protein; hypothetical protein 828448 5868482 PputGB1_0725 Pseudomonas putida GB-1 hypothetical protein YP_001666971.1 825617 R 76869 CDS YP_001666972.1 167031741 5868483 complement(828445..829152) 1 NC_010322.1 KEGG: pen:PSEEN0832 hypothetical protein; hypothetical protein 829152 5868483 PputGB1_0726 Pseudomonas putida GB-1 hypothetical protein YP_001666972.1 828445 R 76869 CDS YP_001666973.1 167031742 5868484 complement(829142..830431) 1 NC_010322.1 KEGG: pen:PSEEN0833 hypothetical protein; hypothetical protein 830431 5868484 PputGB1_0727 Pseudomonas putida GB-1 hypothetical protein YP_001666973.1 829142 R 76869 CDS YP_001666974.1 167031743 5868485 830633..831454 1 NC_010322.1 KEGG: pen:PSEEN0834 hypothetical protein; hypothetical protein 831454 5868485 PputGB1_0728 Pseudomonas putida GB-1 hypothetical protein YP_001666974.1 830633 D 76869 CDS YP_001666975.1 167031744 5868486 831451..831906 1 NC_010322.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0835 ribosomal-protein-alanine acetyltransferase RimI; ribosomal-protein-alanine acetyltransferase 831906 5868486 PputGB1_0729 Pseudomonas putida GB-1 ribosomal-protein-alanine acetyltransferase YP_001666975.1 831451 D 76869 CDS YP_001666976.1 167031745 5868487 831972..832547 1 NC_010322.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: acb:A1S_1248 hypothetical protein; hypothetical protein 832547 5868487 PputGB1_0730 Pseudomonas putida GB-1 hypothetical protein YP_001666976.1 831972 D 76869 CDS YP_001666977.1 167031746 5868488 complement(832487..833404) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0838 transcriptional regulator, LysR family; LysR family transcriptional regulator 833404 5868488 PputGB1_0731 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001666977.1 832487 R 76869 CDS YP_001666978.1 167031747 5868489 833570..834184 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0839 transporter, LysE family; lysine exporter protein LysE/YggA 834184 5868489 PputGB1_0732 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001666978.1 833570 D 76869 CDS YP_001666979.1 167031748 5868490 834292..834576 1 NC_010322.1 hypothetical protein 834576 5868490 PputGB1_0733 Pseudomonas putida GB-1 hypothetical protein YP_001666979.1 834292 D 76869 CDS YP_001666980.1 167031749 5868492 complement(834838..835770) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN0840 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 835770 5868492 PputGB1_0734 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666980.1 834838 R 76869 CDS YP_001666981.1 167031750 5868493 835955..837169 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0841 fosmidomycin/multidrug transport protein (MFS superfamily); major facilitator superfamily transporter 837169 5868493 PputGB1_0735 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001666981.1 835955 D 76869 CDS YP_001666982.1 167031751 5868494 837492..838649 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0842 major facilitator family transporter; major facilitator superfamily transporter 838649 5868494 PputGB1_0736 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001666982.1 837492 D 76869 CDS YP_001666983.1 167031752 5868495 complement(838656..839612) 1 NC_010322.1 PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor; anti-FecI sigma factor FecR 839612 5868495 PputGB1_0737 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666983.1 838656 R 76869 CDS YP_001666984.1 167031753 5868496 complement(839599..840114) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 840114 5868496 PputGB1_0738 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666984.1 839599 R 76869 CDS YP_001666985.1 167031754 5868497 840286..840912 1 NC_010322.1 PFAM: HhH-GPD family protein; KEGG: pen:PSEEN0843 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II 840912 5868497 PputGB1_0739 Pseudomonas putida GB-1 DNA-3-methyladenine glycosylase II YP_001666985.1 840286 D 76869 CDS YP_001666986.1 167031755 5868498 840983..842035 1 NC_010322.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN0845 O6-methylguanine-DNA methyltransferase; AraC family transcriptional regulator 842035 5868498 PputGB1_0740 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001666986.1 840983 D 76869 CDS YP_001666987.1 167031756 5868499 842092..844503 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN0846 ion mechanosensitive channel; mechanosensitive ion channel protein MscS 844503 5868499 PputGB1_0741 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001666987.1 842092 D 76869 CDS YP_001666988.1 167031757 5868500 complement(844610..846040) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0848 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 846040 5868500 PputGB1_0742 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001666988.1 844610 R 76869 CDS YP_001666989.1 167031758 5868501 complement(846054..847553) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN0849 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 847553 5868501 PputGB1_0743 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001666989.1 846054 R 76869 CDS YP_001666990.1 167031759 5868502 complement(847645..848034) 1 NC_010322.1 KEGG: pen:PSEEN0850 hypothetical protein; hypothetical protein 848034 5868502 PputGB1_0744 Pseudomonas putida GB-1 hypothetical protein YP_001666990.1 847645 R 76869 CDS YP_001666991.1 167031760 5868503 848235..848738 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_5893 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 848738 5868503 PputGB1_0745 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001666991.1 848235 D 76869 CDS YP_001666992.1 167031761 5868504 848735..849679 1 NC_010322.1 PFAM: FecR protein; KEGG: dac:Daci_3275 anti-FecI sigma factor, FecR; anti-FecI sigma factor FecR 849679 5868504 PputGB1_0746 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001666992.1 848735 D 76869 CDS YP_001666993.1 167031762 5868505 849819..852239 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: rso:RSc2920 putative hydroxamate-type ferrisiderophore receptor signal peptide protein; TonB-dependent siderophore receptor 852239 5868505 PputGB1_0747 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001666993.1 849819 D 76869 CDS YP_001666994.1 167031763 5868506 852349..853368 1 NC_010322.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN2685 cation transporter, CorA family; Mg2 transporter protein CorA family protein 853368 5868506 PputGB1_0748 Pseudomonas putida GB-1 Mg2 transporter protein CorA family protein YP_001666994.1 852349 D 76869 CDS YP_001666995.1 167031764 5868507 853471..854091 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN0851 hydrolase; isochorismatase hydrolase family; isochorismatase hydrolase 854091 5868507 PputGB1_0749 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001666995.1 853471 D 76869 CDS YP_001666996.1 167031765 5868508 854200..855018 1 NC_010322.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN2681 hypothetical protein; hypothetical protein 855018 5868508 PputGB1_0750 Pseudomonas putida GB-1 hypothetical protein YP_001666996.1 854200 D 76869 CDS YP_001666997.1 167031766 5868509 855055..856251 1 NC_010322.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; KEGG: pfo:Pfl_3513 potassium efflux system protein; potassium efflux system protein 856251 5868509 PputGB1_0751 Pseudomonas putida GB-1 potassium efflux system protein YP_001666997.1 855055 D 76869 CDS YP_001666998.1 167031767 5868510 856292..857389 1 NC_010322.1 PFAM: protein of unknown function UPF0118; KEGG: reh:H16_A2418 predicted permease; hypothetical protein 857389 5868510 PputGB1_0752 Pseudomonas putida GB-1 hypothetical protein YP_001666998.1 856292 D 76869 CDS YP_001666999.1 167031768 5868511 857393..858907 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2417 outer membrane heavy metal efflux protein; RND efflux system outer membrane lipoprotein 858907 5868511 PputGB1_0753 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001666999.1 857393 D 76869 CDS YP_001667000.1 167031769 5868512 858904..860001 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD; secretion protein HlyD family protein 860001 5868512 PputGB1_0754 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001667000.1 858904 D 76869 CDS YP_001667001.1 167031770 5868513 859991..861007 1 NC_010322.1 KEGG: reh:H16_A2415 predicted membrane protein; hypothetical protein 861007 5868513 PputGB1_0755 Pseudomonas putida GB-1 hypothetical protein YP_001667001.1 859991 D 76869 CDS YP_001667002.1 167031771 5868514 complement(861016..862728) 1 NC_010322.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: reu:Reut_A0690 sulphate anion transporter; sulfate transporter 862728 5868514 PputGB1_0756 Pseudomonas putida GB-1 sulfate transporter YP_001667002.1 861016 R 76869 CDS YP_001667003.1 167031772 5868515 862847..863353 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 863353 5868515 PputGB1_0757 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667003.1 862847 D 76869 CDS YP_001667004.1 167031773 5868516 863350..864297 1 NC_010322.1 PFAM: FecR protein; KEGG: mms:mma_2029 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 864297 5868516 PputGB1_0758 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667004.1 863350 D 76869 CDS YP_001667005.1 167031774 5868517 864397..866799 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1927 Ton-B dependent siderophore receptor, putative; TonB-dependent siderophore receptor 866799 5868517 PputGB1_0759 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667005.1 864397 D 76869 CDS YP_001667006.1 167031775 5868518 866959..869067 1 NC_010322.1 KEGG: psa:PST_3446 hypothetical protein; hypothetical protein 869067 5868518 PputGB1_0760 Pseudomonas putida GB-1 hypothetical protein YP_001667006.1 866959 D 76869 CDS YP_001667007.1 167031776 5868519 869042..870979 1 NC_010322.1 KEGG: psa:PST_3445 hypothetical protein; hypothetical protein 870979 5868519 PputGB1_0761 Pseudomonas putida GB-1 hypothetical protein YP_001667007.1 869042 D 76869 CDS YP_001667008.1 167031777 5868520 870976..872364 1 NC_010322.1 KEGG: yli:YALI0F03366g hypothetical protein; hypothetical protein 872364 5868520 PputGB1_0762 Pseudomonas putida GB-1 hypothetical protein YP_001667008.1 870976 D 76869 CDS YP_001667009.1 167031778 5868521 complement(872509..873609) 1 NC_010322.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 873609 5868521 PputGB1_0763 Pseudomonas putida GB-1 GTP-dependent nucleic acid-binding protein EngD YP_001667009.1 872509 R 76869 CDS YP_001667010.1 167031779 5868522 complement(873634..874218) 1 NC_010322.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 874218 5868522 PputGB1_0764 Pseudomonas putida GB-1 peptidyl-tRNA hydrolase YP_001667010.1 873634 R 76869 CDS YP_001667011.1 167031780 5868523 complement(874298..874891) 1 NC_010322.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 874891 5868523 PputGB1_0765 Pseudomonas putida GB-1 50S ribosomal protein L25/general stress protein Ctc YP_001667011.1 874298 R 76869 CDS YP_001667012.1 167031781 5868524 complement(875012..875944) 1 NC_010322.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 875944 5868524 PputGB1_0766 Pseudomonas putida GB-1 ribose-phosphate pyrophosphokinase YP_001667012.1 875012 R 76869 CDS YP_001667013.1 167031782 5868526 complement(876097..876957) 1 NC_010322.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 876957 ipk 5868526 ipk Pseudomonas putida GB-1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001667013.1 876097 R 76869 CDS YP_001667014.1 167031783 5868527 complement(876962..877579) 1 NC_010322.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 877579 lolB 5868527 lolB Pseudomonas putida GB-1 outer membrane lipoprotein LolB YP_001667014.1 876962 R 76869 CDS YP_001667015.1 167031784 5868528 complement(877584..879305) 1 NC_010322.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0860 hypothetical protein; hypothetical protein 879305 5868528 PputGB1_0769 Pseudomonas putida GB-1 hypothetical protein YP_001667015.1 877584 R 76869 CDS YP_001667016.1 167031785 5868529 complement(879515..879895) 1 NC_010322.1 hypothetical protein 879895 5868529 PputGB1_0770 Pseudomonas putida GB-1 hypothetical protein YP_001667016.1 879515 R 76869 CDS YP_001667017.1 167031786 5868530 complement(879892..880866) 1 NC_010322.1 KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein 880866 5868530 PputGB1_0771 Pseudomonas putida GB-1 hypothetical protein YP_001667017.1 879892 R 76869 CDS YP_001667018.1 167031787 5868531 complement(880877..881365) 1 NC_010322.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 881365 5868531 PputGB1_0772 Pseudomonas putida GB-1 Hcp1 family type VI secretion system effector YP_001667018.1 880877 R 76869 CDS YP_001667019.1 167031788 5868532 881833..883110 1 NC_010322.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 883110 hemA 5868532 hemA Pseudomonas putida GB-1 glutamyl-tRNA reductase YP_001667019.1 881833 D 76869 CDS YP_001667020.1 167031789 5868533 883107..884189 1 NC_010322.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 884189 prfA 5868533 prfA Pseudomonas putida GB-1 peptide chain release factor 1 YP_001667020.1 883107 D 76869 CDS YP_001667021.1 167031790 5868534 884189..885019 1 NC_010322.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0877 methylase of polypeptide chain release factors; protein-(glutamine-N5) methyltransferase 885019 5868534 PputGB1_0775 Pseudomonas putida GB-1 protein-(glutamine-N5) methyltransferase YP_001667021.1 884189 D 76869 CDS YP_001667022.1 167031791 5868535 885013..885768 1 NC_010322.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 885768 5868535 PputGB1_0776 Pseudomonas putida GB-1 molybdopterin biosynthesis protein MoeB YP_001667022.1 885013 D 76869 CDS YP_001667023.1 167031792 5868536 885761..886558 1 NC_010322.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 886558 5868536 PputGB1_0777 Pseudomonas putida GB-1 glutamate racemase YP_001667023.1 885761 D 76869 CDS YP_001667024.1 167031793 5868537 886654..887181 1 NC_010322.1 KEGG: pfl:PFL_5155 hypothetical protein; hypothetical protein 887181 5868537 PputGB1_0778 Pseudomonas putida GB-1 hypothetical protein YP_001667024.1 886654 D 76869 CDS YP_001667025.1 167031794 5868538 complement(887238..887936) 1 NC_010322.1 KEGG: pen:PSEEN0880 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 887936 5868538 PputGB1_0779 Pseudomonas putida GB-1 short chain dehydrogenase/reductase family oxidoreductase YP_001667025.1 887238 R 76869 CDS YP_001667026.1 167031795 5868539 complement(887948..889375) 1 NC_010322.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: pen:PSEEN0881 deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding; deoxyribodipyrimidine photo-lyase 889375 5868539 PputGB1_0780 Pseudomonas putida GB-1 deoxyribodipyrimidine photo-lyase YP_001667026.1 887948 R 76869 CDS YP_001667027.1 167031796 5868540 complement(889366..890265) 1 NC_010322.1 PFAM: regulatory protein MerR; KEGG: pen:PSEEN0882 transcriptional regulator, MerR family; MerR family transcriptional regulator 890265 5868540 PputGB1_0781 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001667027.1 889366 R 76869 CDS YP_001667028.1 167031797 5868541 complement(890255..891223) 1 NC_010322.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: pen:PSEEN0883 hypothetical protein; hypothetical protein 891223 5868541 PputGB1_0782 Pseudomonas putida GB-1 hypothetical protein YP_001667028.1 890255 R 76869 CDS YP_001667029.1 167031798 5868542 complement(891324..892310) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN0884 hypothetical protein; FAD dependent oxidoreductase 892310 5868542 PputGB1_0783 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001667029.1 891324 R 76869 CDS YP_001667030.1 167031799 5868543 892497..893402 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: pen:PSEEN0885 hypothetical protein; NAD-dependent epimerase/dehydratase 893402 5868543 PputGB1_0784 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001667030.1 892497 D 76869 CDS YP_001667031.1 167031800 5868544 893416..894429 1 NC_010322.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 894429 hemH 5868544 hemH Pseudomonas putida GB-1 ferrochelatase YP_001667031.1 893416 D 76869 CDS YP_001667032.1 167031801 5868545 complement(894548..895822) 1 NC_010322.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0887 uracil permease; uracil-xanthine permease 895822 5868545 PputGB1_0786 Pseudomonas putida GB-1 uracil-xanthine permease YP_001667032.1 894548 R 76869 CDS YP_001667033.1 167031802 5868546 complement(895825..896463) 1 NC_010322.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 896463 upp 5868546 upp Pseudomonas putida GB-1 uracil phosphoribosyltransferase YP_001667033.1 895825 R 76869 CDS YP_001667034.1 167031803 5868547 896626..897183 1 NC_010322.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 897183 5868547 PputGB1_0788 Pseudomonas putida GB-1 hypoxanthine-guanine phosphoribosyltransferase YP_001667034.1 896626 D 76869 CDS YP_001667035.1 167031804 5868548 897186..897659 1 NC_010322.1 KEGG: pen:PSEEN0890 hypothetical protein; hypothetical protein 897659 5868548 PputGB1_0789 Pseudomonas putida GB-1 hypothetical protein YP_001667035.1 897186 D 76869 CDS YP_001667036.1 167031805 5868549 897711..898181 1 NC_010322.1 KEGG: pen:PSEEN0891 hypothetical protein; hypothetical protein 898181 5868549 PputGB1_0790 Pseudomonas putida GB-1 hypothetical protein YP_001667036.1 897711 D 76869 CDS YP_001667037.1 167031806 5868550 898250..898540 1 NC_010322.1 KEGG: pen:PSEEN0892 hypothetical protein; hypothetical protein 898540 5868550 PputGB1_0791 Pseudomonas putida GB-1 hypothetical protein YP_001667037.1 898250 D 76869 CDS YP_001667038.1 167031807 5868551 complement(898597..900105) 1 NC_010322.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 900105 5868551 PputGB1_0792 Pseudomonas putida GB-1 malate:quinone oxidoreductase YP_001667038.1 898597 R 76869 CDS YP_001667039.1 167031808 5868552 complement(900706..900939) 1 NC_010322.1 KEGG: pen:PSEEN0894 hypothetical protein; hypothetical protein 900939 5868552 PputGB1_0793 Pseudomonas putida GB-1 hypothetical protein YP_001667039.1 900706 R 76869 CDS YP_001667040.1 167031809 5868553 901085..901669 1 NC_010322.1 KEGG: pen:PSEEN0895 lipoprotein; lipoprotein 901669 5868553 PputGB1_0794 Pseudomonas putida GB-1 lipoprotein YP_001667040.1 901085 D 76869 CDS YP_001667041.1 167031810 5868554 complement(901727..901933) 1 NC_010322.1 KEGG: pen:PSEEN0896 hypothetical protein; hypothetical protein 901933 5868554 PputGB1_0795 Pseudomonas putida GB-1 hypothetical protein YP_001667041.1 901727 R 76869 CDS YP_001667042.1 167031811 5868555 902093..902353 1 NC_010322.1 KEGG: pen:PSEEN0897 hypothetical protein; hypothetical protein 902353 5868555 PputGB1_0796 Pseudomonas putida GB-1 hypothetical protein YP_001667042.1 902093 D 76869 CDS YP_001667043.1 167031812 5868556 complement(902474..903640) 1 NC_010322.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0898 hypothetical protein; phospholipid/glycerol acyltransferase 903640 5868556 PputGB1_0797 Pseudomonas putida GB-1 phospholipid/glycerol acyltransferase YP_001667043.1 902474 R 76869 CDS YP_001667044.1 167031813 5868557 903765..903947 1 NC_010322.1 KEGG: pen:PSEEN0900 hypothetical protein; hypothetical protein 903947 5868557 PputGB1_0798 Pseudomonas putida GB-1 hypothetical protein YP_001667044.1 903765 D 76869 CDS YP_001667045.1 167031814 5868558 903947..904207 1 NC_010322.1 KEGG: pen:PSEEN0901 hypothetical protein; hypothetical protein 904207 5868558 PputGB1_0799 Pseudomonas putida GB-1 hypothetical protein YP_001667045.1 903947 D 76869 CDS YP_001667046.1 167031815 5868559 904223..904843 1 NC_010322.1 PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN0902 hypothetical protein; hypothetical protein 904843 5868559 PputGB1_0800 Pseudomonas putida GB-1 hypothetical protein YP_001667046.1 904223 D 76869 CDS YP_001667047.1 167031816 5868560 904920..905738 1 NC_010322.1 PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN0904 zinc-dependent peptidase, M48 family; peptidase M48 Ste24p 905738 5868560 PputGB1_0801 Pseudomonas putida GB-1 peptidase M48 Ste24p YP_001667047.1 904920 D 76869 CDS YP_001667048.1 167031817 5868561 complement(905781..906365) 1 NC_010322.1 PFAM: protein of unknown function UPF0016; KEGG: pen:PSEEN0905 hypothetical protein; hypothetical protein 906365 5868561 PputGB1_0802 Pseudomonas putida GB-1 hypothetical protein YP_001667048.1 905781 R 76869 CDS YP_001667049.1 167031818 5868562 complement(906633..907631) 1 NC_010322.1 PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pen:PSEEN0906 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 907631 5868562 PputGB1_0803 Pseudomonas putida GB-1 rRNA (guanine-N(2)-)-methyltransferase YP_001667049.1 906633 R 76869 CDS YP_001667050.1 167031819 5868563 complement(907686..908651) 1 NC_010322.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 908651 5868563 PputGB1_0804 Pseudomonas putida GB-1 glycerate dehydrogenase YP_001667050.1 907686 R 76869 CDS YP_001667051.1 167031820 5868564 908813..910495 1 NC_010322.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 910495 5868564 PputGB1_0805 Pseudomonas putida GB-1 long-chain-fatty-acid--CoA ligase YP_001667051.1 908813 D 76869 CDS YP_001667052.1 167031821 5868565 910827..912713 1 NC_010322.1 PFAM: protein of unknown function DUF1302; KEGG: pen:PSEEN0909 hypothetical protein; hypothetical protein 912713 5868565 PputGB1_0806 Pseudomonas putida GB-1 hypothetical protein YP_001667052.1 910827 D 76869 CDS YP_001667053.1 167031822 5868566 912739..914103 1 NC_010322.1 PFAM: protein of unknown function DUF1329; KEGG: pen:PSEEN0910 hypothetical protein; hypothetical protein 914103 5868566 PputGB1_0807 Pseudomonas putida GB-1 hypothetical protein YP_001667053.1 912739 D 76869 CDS YP_001667054.1 167031823 5868567 914396..917113 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pen:PSEEN0911 transcriptional regulator, LuxR family; ATP-dependent transcription regulator LuxR 917113 5868567 PputGB1_0808 Pseudomonas putida GB-1 ATP-dependent transcription regulator LuxR YP_001667054.1 914396 D 76869 CDS YP_001667055.1 167031824 5868568 917273..918880 1 NC_010322.1 PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0912 response regulator/TPR domain protein; response regulator receiver protein 918880 5868568 PputGB1_0809 Pseudomonas putida GB-1 response regulator receiver protein YP_001667055.1 917273 D 76869 CDS YP_001667056.1 167031825 5868569 918877..919569 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pen:PSEEN0913 sensor histidine kinase; histidine kinase 919569 5868569 PputGB1_0810 Pseudomonas putida GB-1 histidine kinase YP_001667056.1 918877 D 76869 CDS YP_001667057.1 167031826 5868570 919868..920512 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0914 hydrolase; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 920512 5868570 PputGB1_0811 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001667057.1 919868 D 76869 CDS YP_001667058.1 167031827 5868571 920622..921344 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0915 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 921344 5868571 PputGB1_0812 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001667058.1 920622 D 76869 CDS YP_001667059.1 167031828 5868572 complement(921382..923469) 1 NC_010322.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 923469 5868572 PputGB1_0813 Pseudomonas putida GB-1 phosphate acetyltransferase YP_001667059.1 921382 R 76869 CDS YP_001667060.1 167031829 5868573 complement(923501..923788) 1 NC_010322.1 KEGG: pfl:PFL_0939 hypothetical protein; hypothetical protein 923788 5868573 PputGB1_0814 Pseudomonas putida GB-1 hypothetical protein YP_001667060.1 923501 R 76869 CDS YP_001667061.1 167031830 5868574 923802..924287 1 NC_010322.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0918 peptidyl-prolyl cis-trans isomerase SlyD (FKBP-type); FKBP-type peptidylprolyl isomerase 924287 5868574 PputGB1_0815 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001667061.1 923802 D 76869 CDS YP_001667062.1 167031831 5868575 924433..924915 1 NC_010322.1 PFAM: glutathione peroxidase; KEGG: pen:PSEEN0919 glutathione peroxidase; glutathione peroxidase 924915 5868575 PputGB1_0816 Pseudomonas putida GB-1 glutathione peroxidase YP_001667062.1 924433 D 76869 CDS YP_001667063.1 167031832 5868576 complement(925043..926233) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN0921 glycosyl transferase, group 1; glycosyl transferase group 1 protein 926233 5868576 PputGB1_0817 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001667063.1 925043 R 76869 CDS YP_001667064.1 167031833 5868577 926412..927728 1 NC_010322.1 KEGG: pen:PSEEN0922 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 927728 5868577 PputGB1_0818 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001667064.1 926412 D 76869 CDS YP_001667065.1 167031834 5868578 complement(927765..928493) 1 NC_010322.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 928493 5868578 PputGB1_0819 Pseudomonas putida GB-1 putative sulfate transport protein CysZ YP_001667065.1 927765 R 76869 CDS YP_001667066.1 167031835 5868579 928816..929778 1 NC_010322.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0924 thioredoxin reductase; thioredoxin reductase 929778 5868579 PputGB1_0820 Pseudomonas putida GB-1 thioredoxin reductase YP_001667066.1 928816 D 76869 CDS YP_001667067.1 167031836 5868580 complement(929837..930685) 1 NC_010322.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 930685 5868580 PputGB1_0821 Pseudomonas putida GB-1 nicotinate-nucleotide pyrophosphorylase YP_001667067.1 929837 R 76869 CDS YP_001667068.1 167031837 5868581 930928..933087 1 NC_010322.1 PFAM: protein of unknown function DUF1631; KEGG: pen:PSEEN0926 hypothetical protein; hypothetical protein 933087 5868581 PputGB1_0822 Pseudomonas putida GB-1 hypothetical protein YP_001667068.1 930928 D 76869 CDS YP_001667069.1 167031838 5868582 933175..933747 1 NC_010322.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0927 N-acetyl-anhydromuramyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 933747 5868582 PputGB1_0823 Pseudomonas putida GB-1 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001667069.1 933175 D 76869 CDS YP_001667070.1 167031839 5868583 933744..934574 1 NC_010322.1 KEGG: pen:PSEEN0928 inner membrane protein AmpE; signaling modulator of AmpD, AmpE 934574 5868583 PputGB1_0824 Pseudomonas putida GB-1 signaling modulator of AmpD, AmpE YP_001667070.1 933744 D 76869 CDS YP_001667071.1 167031840 5868584 complement(934614..935390) 1 NC_010322.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN0930 deoxyribonuclease, TatD family (metal-dependent); TatD family hydrolase 935390 5868584 PputGB1_0825 Pseudomonas putida GB-1 TatD family hydrolase YP_001667071.1 934614 R 76869 CDS YP_001667072.1 167031841 5868585 complement(935393..936388) 1 NC_010322.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 936388 5868585 PputGB1_0826 Pseudomonas putida GB-1 DNA-binding transcriptional regulator FruR YP_001667072.1 935393 R 76869 CDS YP_001667073.1 167031842 5868586 936673..939525 1 NC_010322.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN0932 phosphotransferase system FruB, fructose-specific EI/HPr/EIIA components; phosphoenolpyruvate-protein phosphotransferase 939525 5868586 PputGB1_0827 Pseudomonas putida GB-1 phosphoenolpyruvate-protein phosphotransferase YP_001667073.1 936673 D 76869 CDS YP_001667074.1 167031843 5868587 939526..940473 1 NC_010322.1 KEGG: pen:PSEEN0933 1-phosphofructokinase FruK; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 940473 5868587 PputGB1_0828 Pseudomonas putida GB-1 1-phosphofructokinase YP_001667074.1 939526 D 76869 CDS YP_001667075.1 167031844 5868588 940470..942212 1 NC_010322.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: pen:PSEEN0934 phosphotransferase system FruA, fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 942212 5868588 PputGB1_0829 Pseudomonas putida GB-1 PTS system fructose subfamily transporter subunit IIC YP_001667075.1 940470 D 76869 CDS YP_001667076.1 167031845 5868589 complement(942359..942580) 1 NC_010322.1 KEGG: pen:PSEEN0935 hypothetical protein; hypothetical protein 942580 5868589 PputGB1_0830 Pseudomonas putida GB-1 hypothetical protein YP_001667076.1 942359 R 76869 CDS YP_001667077.1 167031846 5868590 942783..943259 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0936 hypothetical protein; hypothetical protein 943259 5868590 PputGB1_0831 Pseudomonas putida GB-1 hypothetical protein YP_001667077.1 942783 D 76869 CDS YP_001667078.1 167031847 5868591 complement(943256..944746) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0937 hypothetical protein; diguanylate cyclase 944746 5868591 PputGB1_0832 Pseudomonas putida GB-1 diguanylate cyclase YP_001667078.1 943256 R 76869 CDS YP_001667079.1 167031848 5868592 complement(944981..946315) 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0940 porin OprD family; outer membrane porin 946315 5868592 PputGB1_0833 Pseudomonas putida GB-1 outer membrane porin YP_001667079.1 944981 R 76869 CDS YP_001667080.1 167031849 5868593 complement(946521..946745) 1 NC_010322.1 KEGG: pen:PSEEN0941 hypothetical protein; hypothetical protein 946745 5868593 PputGB1_0834 Pseudomonas putida GB-1 hypothetical protein YP_001667080.1 946521 R 76869 CDS YP_001667081.1 167031850 5868594 complement(946902..948299) 1 NC_010322.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0942 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 948299 5868594 PputGB1_0835 Pseudomonas putida GB-1 heavy metal sensor signal transduction histidine kinase YP_001667081.1 946902 R 76869 CDS YP_001667082.1 167031851 5868595 complement(948274..948948) 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN0943 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator 948948 5868595 PputGB1_0836 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001667082.1 948274 R 76869 CDS YP_001667083.1 167031852 5868596 complement(948958..952050) 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN0944 multidrug transport protein; acriflavin resistance protein family; acriflavin resistance protein 952050 5868596 PputGB1_0837 Pseudomonas putida GB-1 acriflavin resistance protein YP_001667083.1 948958 R 76869 CDS YP_001667084.1 167031853 5868597 complement(952047..953210) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0945 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit 953210 5868597 PputGB1_0838 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001667084.1 952047 R 76869 CDS YP_001667085.1 167031854 5868598 complement(953479..954213) 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0947 hypothetical protein; hypothetical protein 954213 5868598 PputGB1_0839 Pseudomonas putida GB-1 hypothetical protein YP_001667085.1 953479 R 76869 CDS YP_001667086.1 167031855 5868599 complement(954210..954521) 1 NC_010322.1 KEGG: pen:PSEEN0948 hypothetical protein; hypothetical protein 954521 5868599 PputGB1_0840 Pseudomonas putida GB-1 hypothetical protein YP_001667086.1 954210 R 76869 CDS YP_001667087.1 167031856 5868600 complement(954610..955509) 1 NC_010322.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN0950 chemotaxis signal transduction protein CheW-like; response regulator receiver modulated CheW protein 955509 5868600 PputGB1_0841 Pseudomonas putida GB-1 response regulator receiver modulated CheW protein YP_001667087.1 954610 R 76869 CDS YP_001667088.1 167031857 5868601 complement(955650..956834) 1 NC_010322.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: stt:t2646 putative type I secretion protein; HlyD family type I secretion membrane fusion protein 956834 5868601 PputGB1_0842 Pseudomonas putida GB-1 HlyD family type I secretion membrane fusion protein YP_001667088.1 955650 R 76869 CDS YP_001667089.1 167031858 5868602 complement(956831..958999) 1 NC_010322.1 KEGG: aeh:Mlg_2167 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 958999 5868602 PputGB1_0843 Pseudomonas putida GB-1 type I secretion system ATPase YP_001667089.1 956831 R 76869 CDS YP_001667090.1 167031859 5868603 complement(958996..960432) 1 NC_010322.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ses:SARI_00237 hypothetical protein; TolC family type I secretion outer membrane protein 960432 5868603 PputGB1_0844 Pseudomonas putida GB-1 TolC family type I secretion outer membrane protein YP_001667090.1 958996 R 76869 CDS YP_001667091.1 167031860 5868604 complement(960496..976851) 1 NC_010322.1 KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein 976851 5868604 PputGB1_0845 Pseudomonas putida GB-1 hypothetical protein YP_001667091.1 960496 R 76869 CDS YP_001667092.1 167031861 5868605 complement(977043..978599) 1 NC_010322.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 978599 5868605 PputGB1_0846 Pseudomonas putida GB-1 anaerobic nitric oxide reductase transcriptional regulator YP_001667092.1 977043 R 76869 CDS YP_001667093.1 167031862 5868606 978754..979932 1 NC_010322.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 979932 5868606 PputGB1_0847 Pseudomonas putida GB-1 nitric oxide dioxygenase YP_001667093.1 978754 D 76869 CDS YP_001667094.1 167031863 5868607 980321..980827 1 NC_010322.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 980827 5868607 PputGB1_0848 Pseudomonas putida GB-1 disulfide bond formation protein B YP_001667094.1 980321 D 76869 CDS YP_001667095.1 167031864 5868608 981387..982328 1 NC_010322.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: pen:PSEEN0956 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 982328 5868608 PputGB1_0849 Pseudomonas putida GB-1 ubiquinol oxidase subunit II YP_001667095.1 981387 D 76869 CDS YP_001667096.1 167031865 5868609 982332..984350 1 NC_010322.1 KEGG: pen:PSEEN0957 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 984350 5868609 PputGB1_0850 Pseudomonas putida GB-1 cytochrome o ubiquinol oxidase subunit I YP_001667096.1 982332 D 76869 CDS YP_001667097.1 167031866 5868610 984354..984980 1 NC_010322.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0958 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 984980 5868610 PputGB1_0851 Pseudomonas putida GB-1 cytochrome o ubiquinol oxidase subunit III YP_001667097.1 984354 D 76869 CDS YP_001667098.1 167031867 5868611 984980..985312 1 NC_010322.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: pen:PSEEN0959 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 985312 5868611 PputGB1_0852 Pseudomonas putida GB-1 cytochrome o ubiquinol oxidase subunit IV YP_001667098.1 984980 D 76869 CDS YP_001667099.1 167031868 5868612 985324..986211 1 NC_010322.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 986211 5868612 PputGB1_0853 Pseudomonas putida GB-1 protoheme IX farnesyltransferase YP_001667099.1 985324 D 76869 CDS YP_001667100.1 167031869 5868613 986478..987686 1 NC_010322.1 PFAM: aminotransferase class I and II; KEGG: pen:PSEEN0965 aminotransferase (transaminase); aminotransferase 987686 5868613 PputGB1_0854 Pseudomonas putida GB-1 aminotransferase YP_001667100.1 986478 D 76869 CDS YP_001667101.1 167031870 5868614 987800..988927 1 NC_010322.1 KEGG: pen:PSEEN0961 hypothetical protein; hypothetical protein 988927 5868614 PputGB1_0855 Pseudomonas putida GB-1 hypothetical protein YP_001667101.1 987800 D 76869 CDS YP_001667102.1 167031871 5868615 989054..989437 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0966 hypothetical protein; hypothetical protein 989437 5868615 PputGB1_0856 Pseudomonas putida GB-1 hypothetical protein YP_001667102.1 989054 D 76869 CDS YP_001667103.1 167031872 5868616 989618..990181 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0985 acetyltransferase, GNAT family; N-acetyltransferase GCN5 990181 5868616 PputGB1_0857 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001667103.1 989618 D 76869 CDS YP_001667104.1 167031873 5868617 990238..990765 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE1096 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 990765 5868617 PputGB1_0858 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667104.1 990238 D 76869 CDS YP_001667105.1 167031874 5868618 990762..991733 1 NC_010322.1 PFAM: FecR protein; KEGG: neu:NE1095 putative transmembrane sensor; anti-FecI sigma factor FecR 991733 5868618 PputGB1_0859 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667105.1 990762 D 76869 CDS YP_001667106.1 167031875 5868619 991810..994335 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 994335 5868619 PputGB1_0860 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667106.1 991810 D 76869 CDS YP_001667107.1 167031876 5868620 994402..994941 1 NC_010322.1 KEGG: pen:PSEEN0987 hypothetical protein; hypothetical protein 994941 5868620 PputGB1_0861 Pseudomonas putida GB-1 hypothetical protein YP_001667107.1 994402 D 76869 CDS YP_001667108.1 167031877 5868621 994962..995348 1 NC_010322.1 PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN0989 hypothetical protein; hypothetical protein 995348 5868621 PputGB1_0862 Pseudomonas putida GB-1 hypothetical protein YP_001667108.1 994962 D 76869 CDS YP_001667109.1 167031878 5868622 complement(995487..996599) 1 NC_010322.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 996599 5868622 PputGB1_0863 Pseudomonas putida GB-1 tRNA 2-selenouridine synthase YP_001667109.1 995487 R 76869 CDS YP_001667110.1 167031879 5868623 complement(996599..997633) 1 NC_010322.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 997633 5868623 PputGB1_0864 Pseudomonas putida GB-1 selenophosphate synthetase YP_001667110.1 996599 R 76869 CDS YP_001667111.1 167031880 5868624 997772..998626 1 NC_010322.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN0992 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 998626 5868624 PputGB1_0865 Pseudomonas putida GB-1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001667111.1 997772 D 76869 CDS YP_001667112.1 167031881 5868625 998638..999432 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0993 phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein 999432 5868625 PputGB1_0866 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667112.1 998638 D 76869 CDS YP_001667113.1 167031882 5868626 999426..1000253 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0994 phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1000253 5868626 PputGB1_0867 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667113.1 999426 D 76869 CDS YP_001667114.1 167031883 5868627 1000250..1001017 1 NC_010322.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0995 phosphonate ABC transporter, permease protein; phosphonate ABC transporter inner membrane subunit 1001017 5868627 PputGB1_0868 Pseudomonas putida GB-1 phosphonate ABC transporter inner membrane subunit YP_001667114.1 1000250 D 76869 CDS YP_001667115.1 167031884 5868628 complement(1001032..1001919) 1 NC_010322.1 PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN0996 hypothetical protein; hypothetical protein 1001919 5868628 PputGB1_0869 Pseudomonas putida GB-1 hypothetical protein YP_001667115.1 1001032 R 76869 CDS YP_001667116.1 167031885 5868629 complement(1002016..1002495) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0998 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1002495 5868629 PputGB1_0870 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001667116.1 1002016 R 76869 CDS YP_001667117.1 167031886 5868630 complement(1002599..1003222) 1 NC_010322.1 KEGG: ppr:PBPRA0472 hypothetical protein; hypothetical protein 1003222 5868630 PputGB1_0871 Pseudomonas putida GB-1 hypothetical protein YP_001667117.1 1002599 R 76869 CDS YP_001667118.1 167031887 5868631 1003548..1004054 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3268 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1004054 5868631 PputGB1_0872 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667118.1 1003548 D 76869 CDS YP_001667119.1 167031888 5868632 1004054..1004995 1 NC_010322.1 PFAM: FecR protein; KEGG: mms:mma_3496 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 1004995 5868632 PputGB1_0873 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667119.1 1004054 D 76869 CDS YP_001667120.1 167031889 5868633 1005070..1007592 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: dac:Daci_3273 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1007592 5868633 PputGB1_0874 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667120.1 1005070 D 76869 CDS YP_001667121.1 167031890 5868635 1007906..1008955 1 NC_010322.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1008955 queA 5868635 queA Pseudomonas putida GB-1 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001667121.1 1007906 D 76869 CDS YP_001667122.1 167031891 5868636 1008952..1010085 1 NC_010322.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1010085 tgt 5868636 tgt Pseudomonas putida GB-1 queuine tRNA-ribosyltransferase YP_001667122.1 1008952 D 76869 CDS YP_001667123.1 167031892 5868637 1010128..1010463 1 NC_010322.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1010463 yajC 5868637 yajC Pseudomonas putida GB-1 preprotein translocase subunit YajC YP_001667123.1 1010128 D 76869 CDS YP_001667124.1 167031893 5868638 1010527..1012389 1 NC_010322.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1012389 secD 5868638 secD Pseudomonas putida GB-1 preprotein translocase subunit SecD YP_001667124.1 1010527 D 76869 CDS YP_001667125.1 167031894 5868639 1012400..1013308 1 NC_010322.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1013308 secF 5868639 secF Pseudomonas putida GB-1 preprotein translocase subunit SecF YP_001667125.1 1012400 D 76869 CDS YP_001667126.1 167031895 5868640 1013439..1013969 1 NC_010322.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1004 hypothetical protein; hypothetical protein 1013969 5868640 PputGB1_0880 Pseudomonas putida GB-1 hypothetical protein YP_001667126.1 1013439 D 76869 CDS YP_001667127.1 167031896 5868641 complement(1014077..1014895) 1 NC_010322.1 PFAM: inositol monophosphatase; KEGG: pen:PSEEN1005 inositol-1-monophosphatase (IMPase) (inositol-1-phosphatase) (I-1-Pase); inositol-phosphate phosphatase 1014895 5868641 PputGB1_0881 Pseudomonas putida GB-1 inositol-phosphate phosphatase YP_001667127.1 1014077 R 76869 CDS YP_001667128.1 167031897 5868642 1015047..1015802 1 NC_010322.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN1006 tRNA/rRNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1015802 5868642 PputGB1_0882 Pseudomonas putida GB-1 RNA methyltransferase YP_001667128.1 1015047 D 76869 CDS YP_001667129.1 167031898 5868643 1015806..1016591 1 NC_010322.1 TIGRFAM: serine O-acetyltransferase; KEGG: pen:PSEEN1007 serine O-acetyltransferase; serine O-acetyltransferase 1016591 5868643 PputGB1_0883 Pseudomonas putida GB-1 serine O-acetyltransferase YP_001667129.1 1015806 D 76869 CDS YP_001667130.1 167031899 5868644 1016714..1017262 1 NC_010322.1 TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN1009 iron-sulfur cluster assembly transcription factor IscR; BadM/Rrf2 family transcriptional regulator 1017262 5868644 PputGB1_0884 Pseudomonas putida GB-1 BadM/Rrf2 family transcriptional regulator YP_001667130.1 1016714 D 76869 CDS YP_001667131.1 167031900 5868645 1017309..1018523 1 NC_010322.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1018523 5868645 PputGB1_0885 Pseudomonas putida GB-1 cysteine desulfurase YP_001667131.1 1017309 D 76869 CDS YP_001667132.1 167031901 5868646 1018570..1018956 1 NC_010322.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pfl:PFL_4964 FeS cluster assembly scaffold IscU; scaffold protein 1018956 5868646 PputGB1_0886 Pseudomonas putida GB-1 scaffold protein YP_001667132.1 1018570 D 76869 CDS YP_001667133.1 167031902 5868647 1018982..1019305 1 NC_010322.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pen:PSEEN1012 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1019305 5868647 PputGB1_0887 Pseudomonas putida GB-1 iron-sulfur cluster assembly protein IscA YP_001667133.1 1018982 D 76869 CDS YP_001667134.1 167031903 5868648 1019314..1019835 1 NC_010322.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1019835 hscB 5868648 hscB Pseudomonas putida GB-1 co-chaperone HscB YP_001667134.1 1019314 D 76869 CDS YP_001667135.1 167031904 5868649 1019878..1021740 1 NC_010322.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1021740 hscA 5868649 hscA Pseudomonas putida GB-1 chaperone protein HscA YP_001667135.1 1019878 D 76869 CDS YP_001667136.1 167031905 5868650 1021744..1022085 1 NC_010322.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pen:PSEEN1015 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1022085 5868650 PputGB1_0890 Pseudomonas putida GB-1 ferredoxin, 2Fe-2S type, ISC system YP_001667136.1 1021744 D 76869 CDS YP_001667137.1 167031906 5868651 1022096..1022296 1 NC_010322.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: pen:PSEEN1016 hypothetical protein; FeS assembly protein IscX 1022296 5868651 PputGB1_0891 Pseudomonas putida GB-1 FeS assembly protein IscX YP_001667137.1 1022096 D 76869 CDS YP_001667138.1 167031907 5868652 1022385..1022810 1 NC_010322.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1022810 ndk 5868652 ndk Pseudomonas putida GB-1 nucleoside diphosphate kinase YP_001667138.1 1022385 D 76869 CDS YP_001667139.1 167031908 5868653 1022839..1023984 1 NC_010322.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pen:PSEEN1018 radical SAM enzyme, Cfr family; radical SAM protein 1023984 5868653 PputGB1_0893 Pseudomonas putida GB-1 radical SAM protein YP_001667139.1 1022839 D 76869 CDS YP_001667140.1 167031909 5868654 1023999..1024760 1 NC_010322.1 KEGG: pen:PSEEN1019 type IV pili biogenesis protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1024760 5868654 PputGB1_0894 Pseudomonas putida GB-1 type IV pilus biogenesis/stability protein PilW YP_001667140.1 1023999 D 76869 CDS YP_001667141.1 167031910 5868655 1024757..1025791 1 NC_010322.1 SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN1020 transcriptional regulator; XRE family transcriptional regulator 1025791 5868655 PputGB1_0895 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001667141.1 1024757 D 76869 CDS YP_001667142.1 167031911 5868656 1025795..1026904 1 NC_010322.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1026904 ispG 5868656 ispG Pseudomonas putida GB-1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001667142.1 1025795 D 76869 CDS YP_001667143.1 167031912 5868657 1026930..1028219 1 NC_010322.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1028219 hisS 5868657 hisS Pseudomonas putida GB-1 histidyl-tRNA synthetase YP_001667143.1 1026930 D 76869 CDS YP_001667144.1 167031913 5868658 1028259..1028900 1 NC_010322.1 KEGG: pen:PSEEN1023 hypothetical protein; hypothetical protein 1028900 5868658 PputGB1_0898 Pseudomonas putida GB-1 hypothetical protein YP_001667144.1 1028259 D 76869 CDS YP_001667145.1 167031914 5868659 1028901..1030043 1 NC_010322.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1024 hypothetical protein; outer membrane assembly lipoprotein YfgL 1030043 5868659 PputGB1_0899 Pseudomonas putida GB-1 outer membrane assembly lipoprotein YfgL YP_001667145.1 1028901 D 76869 CDS YP_001667146.1 167031915 5868660 1030160..1031623 1 NC_010322.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1031623 engA 5868660 engA Pseudomonas putida GB-1 GTP-binding protein EngA YP_001667146.1 1030160 D 76869 CDS YP_001667147.1 167031916 5868661 1031763..1032911 1 NC_010322.1 catalyzes the transfer of an amino moiety; putative aminotransferase 1032911 5868661 PputGB1_0901 Pseudomonas putida GB-1 putative aminotransferase YP_001667147.1 1031763 D 76869 CDS YP_001667148.1 167031917 5868662 1032899..1033690 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1027 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1033690 5868662 PputGB1_0902 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001667148.1 1032899 D 76869 CDS YP_001667149.1 167031918 5868663 complement(1033748..1036300) 1 NC_010322.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein; flavodoxin/nitric oxide synthase 1036300 5868663 PputGB1_0903 Pseudomonas putida GB-1 flavodoxin/nitric oxide synthase YP_001667149.1 1033748 R 76869 CDS YP_001667150.1 167031919 5868664 complement(1036406..1038712) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1029 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1038712 5868664 PputGB1_0904 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667150.1 1036406 R 76869 CDS YP_001667151.1 167031920 5868665 1038935..1039615 1 NC_010322.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN1031 PKHD-type hydroxylase; iron-uptake factor; putative hydroxylase 1039615 5868665 PputGB1_0905 Pseudomonas putida GB-1 putative hydroxylase YP_001667151.1 1038935 D 76869 CDS YP_001667152.1 167031921 5868666 1039619..1040368 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1032 hypothetical protein; Sel1 domain-containing protein 1040368 5868666 PputGB1_0906 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001667152.1 1039619 D 76869 CDS YP_001667153.1 167031922 5868667 1040478..1041011 1 NC_010322.1 KEGG: pen:PSEEN1033 hypothetical protein; hypothetical protein 1041011 5868667 PputGB1_0907 Pseudomonas putida GB-1 hypothetical protein YP_001667153.1 1040478 D 76869 CDS YP_001667154.1 167031923 5868668 complement(1041051..1042214) 1 NC_010322.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN1035 ornithine decarboxylase; ornithine decarboxylase 1042214 5868668 PputGB1_0908 Pseudomonas putida GB-1 ornithine decarboxylase YP_001667154.1 1041051 R 76869 CDS YP_001667155.1 167031924 5868669 1042709..1043206 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1037 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 1043206 5868669 PputGB1_0909 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667155.1 1042709 D 76869 CDS YP_001667156.1 167031925 5868670 1043227..1044189 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 1044189 5868670 PputGB1_0910 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667156.1 1043227 D 76869 CDS YP_001667157.1 167031926 5868671 1044298..1046727 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN1039 FecA-like outer membrane receptor; TonB-dependent siderophore receptor 1046727 5868671 PputGB1_0911 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667157.1 1044298 D 76869 CDS YP_001667158.1 167031927 5868672 complement(1046833..1047990) 1 NC_010322.1 KEGG: pen:PSEEN1040 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1047990 5868672 PputGB1_0912 Pseudomonas putida GB-1 glycine betaine/L-proline ABC transporter ATPase YP_001667158.1 1046833 R 76869 CDS YP_001667159.1 167031928 5868673 complement(1047987..1048640) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1041 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1048640 5868673 PputGB1_0913 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667159.1 1047987 R 76869 CDS YP_001667160.1 167031929 5868674 complement(1048637..1049551) 1 NC_010322.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1042 glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; substrate-binding region of ABC-type glycine betaine transport system 1049551 5868674 PputGB1_0914 Pseudomonas putida GB-1 substrate-binding region of ABC-type glycine betaine transport system YP_001667160.1 1048637 R 76869 CDS YP_001667161.1 167031930 5868675 complement(1049566..1050279) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1043 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1050279 5868675 PputGB1_0915 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667161.1 1049566 R 76869 CDS YP_001667162.1 167031931 5868676 1050839..1052422 1 NC_010322.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1052422 prfC 5868676 prfC Pseudomonas putida GB-1 peptide chain release factor 3 YP_001667162.1 1050839 D 76869 CDS YP_001667163.1 167031932 5868677 complement(1052456..1053535) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1048 periplasmic polyamine-binding protein; extracellular solute-binding protein 1053535 5868677 PputGB1_0917 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667163.1 1052456 R 76869 CDS YP_001667164.1 167031933 5868678 complement(1053588..1053929) 1 NC_010322.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN1049 hypothetical protein; hypothetical protein 1053929 5868678 PputGB1_0918 Pseudomonas putida GB-1 hypothetical protein YP_001667164.1 1053588 R 76869 CDS YP_001667165.1 167031934 5868679 complement(1053963..1055390) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1050 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1055390 5868679 PputGB1_0919 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001667165.1 1053963 R 76869 CDS YP_001667166.1 167031935 5868680 complement(1055434..1056258) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1051 transcriptional regulator, AraC family; AraC family transcriptional regulator 1056258 5868680 PputGB1_0920 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001667166.1 1055434 R 76869 CDS YP_001667167.1 167031936 5868681 complement(1056530..1057498) 1 NC_010322.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 1057498 dppF 5868681 dppF Pseudomonas putida GB-1 dipeptide transporter ATP-binding subunit YP_001667167.1 1056530 R 76869 CDS YP_001667168.1 167031937 5868682 complement(1057498..1058466) 1 NC_010322.1 KEGG: pen:PSEEN1054 dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1058466 5868682 PputGB1_0922 Pseudomonas putida GB-1 oligopeptide/dipeptide ABC transporter ATPase YP_001667168.1 1057498 R 76869 CDS YP_001667169.1 167031938 5868683 complement(1058477..1059403) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1055 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1059403 5868683 PputGB1_0923 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667169.1 1058477 R 76869 CDS YP_001667170.1 167031939 5868684 complement(1059414..1060424) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1056 dipeptide ABC transporter, permease protein; alkaline phosphatase 1060424 5868684 PputGB1_0924 Pseudomonas putida GB-1 alkaline phosphatase YP_001667170.1 1059414 R 76869 CDS YP_001667171.1 167031940 5868685 complement(1060516..1062126) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1057 dipeptide ABC transporter, periplasmic dipeptide-binding protein; extracellular solute-binding protein 1062126 5868685 PputGB1_0925 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667171.1 1060516 R 76869 CDS YP_001667172.1 167031941 5868686 complement(1062205..1063584) 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN1058 porin, OprD family; outer membrane porin 1063584 5868686 PputGB1_0926 Pseudomonas putida GB-1 outer membrane porin YP_001667172.1 1062205 R 76869 CDS YP_001667173.1 167031942 5868687 complement(1063814..1065406) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1059 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 1065406 5868687 PputGB1_0927 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667173.1 1063814 R 76869 CDS YP_001667174.1 167031943 5868688 complement(1065554..1067179) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1060 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 1067179 5868688 PputGB1_0928 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667174.1 1065554 R 76869 CDS YP_001667175.1 167031944 5868689 complement(1067508..1068224) 1 NC_010322.1 PFAM: protein of unknown function DUF541; KEGG: pen:PSEEN1061 hypothetical protein; hypothetical protein 1068224 5868689 PputGB1_0929 Pseudomonas putida GB-1 hypothetical protein YP_001667175.1 1067508 R 76869 CDS YP_001667176.1 167031945 5868690 1068426..1069682 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1062 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1069682 5868690 PputGB1_0930 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001667176.1 1068426 D 76869 CDS YP_001667177.1 167031946 5868691 1069679..1070242 1 NC_010322.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: pen:PSEEN1063 response regulator, RegA/PrrA/ActR type; two component Fis family transcriptional regulator 1070242 5868691 PputGB1_0931 Pseudomonas putida GB-1 two component Fis family transcriptional regulator YP_001667177.1 1069679 D 76869 CDS YP_001667178.1 167031947 5868692 1070398..1071339 1 NC_010322.1 PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN1066 hypothetical protein; auxin efflux carrier 1071339 5868692 PputGB1_0932 Pseudomonas putida GB-1 auxin efflux carrier YP_001667178.1 1070398 D 76869 CDS YP_001667179.1 167031948 5868693 1071396..1072754 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1067 aromatic amino acid transporter, APC family; amino acid permease-associated protein 1072754 5868693 PputGB1_0933 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001667179.1 1071396 D 76869 CDS YP_001667180.1 167031949 5868694 complement(1072819..1073193) 1 NC_010322.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1068 4-carboxymuconolactone decarboxylase PcaC; carboxymuconolactone decarboxylase 1073193 5868694 PputGB1_0934 Pseudomonas putida GB-1 carboxymuconolactone decarboxylase YP_001667180.1 1072819 R 76869 CDS YP_001667181.1 167031950 5868695 complement(1073204..1074229) 1 NC_010322.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pen:PSEEN1069 K+-dependent Na+/Ca+ antiporter; CaCA family Na(+)/Ca(+) antiporter 1074229 5868695 PputGB1_0935 Pseudomonas putida GB-1 CaCA family Na(+)/Ca(+) antiporter YP_001667181.1 1073204 R 76869 CDS YP_001667182.1 167031951 5868696 complement(1074308..1074682) 1 NC_010322.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pen:PSEEN1070 lipoprotein, RplA family; rare lipoprotein A 1074682 5868696 PputGB1_0936 Pseudomonas putida GB-1 rare lipoprotein A YP_001667182.1 1074308 R 76869 CDS YP_001667183.1 167031952 5868697 complement(1074829..1076274) 1 NC_010322.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1076274 gatB 5868697 gatB Pseudomonas putida GB-1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001667183.1 1074829 R 76869 CDS YP_001667184.1 167031953 5868698 complement(1076286..1077737) 1 NC_010322.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1077737 gatA 5868698 gatA Pseudomonas putida GB-1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001667184.1 1076286 R 76869 CDS YP_001667185.1 167031954 5868699 complement(1077753..1078040) 1 NC_010322.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1078040 gatC 5868699 gatC Pseudomonas putida GB-1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001667185.1 1077753 R 76869 CDS YP_001667186.1 167031955 5868700 1078246..1079283 1 NC_010322.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1079283 5868700 PputGB1_0940 Pseudomonas putida GB-1 rod shape-determining protein MreB YP_001667186.1 1078246 D 76869 CDS YP_001667187.1 167031956 5868701 1079510..1080487 1 NC_010322.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1080487 5868701 PputGB1_0941 Pseudomonas putida GB-1 rod shape-determining protein MreC YP_001667187.1 1079510 D 76869 CDS YP_001667188.1 167031957 5868702 1080487..1080975 1 NC_010322.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: pen:PSEEN1076 rod shape-determining protein MreD; rod shape-determining protein MreD 1080975 5868702 PputGB1_0942 Pseudomonas putida GB-1 rod shape-determining protein MreD YP_001667188.1 1080487 D 76869 CDS YP_001667189.1 167031958 5868703 1081008..1081616 1 NC_010322.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1081616 5868703 PputGB1_0943 Pseudomonas putida GB-1 Maf-like protein YP_001667189.1 1081008 D 76869 CDS YP_001667190.1 167031959 5868704 1081674..1083131 1 NC_010322.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1078 ibonuclease G; ribonuclease 1083131 5868704 PputGB1_0944 Pseudomonas putida GB-1 ribonuclease YP_001667190.1 1081674 D 76869 CDS YP_001667191.1 167031960 5868705 1083220..1087035 1 NC_010322.1 KEGG: pen:PSEEN1079 hypothetical protein; hypothetical protein 1087035 5868705 PputGB1_0945 Pseudomonas putida GB-1 hypothetical protein YP_001667191.1 1083220 D 76869 CDS YP_001667192.1 167031961 5868706 1087044..1087895 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1080 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1087895 5868706 PputGB1_0946 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001667192.1 1087044 D 76869 CDS YP_001667193.1 167031962 5868707 1087898..1089337 1 NC_010322.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1081 peptidase U62 TldD; peptidase U62 modulator of DNA gyrase 1089337 5868707 PputGB1_0947 Pseudomonas putida GB-1 peptidase U62 modulator of DNA gyrase YP_001667193.1 1087898 D 76869 CDS YP_001667194.1 167031963 5868708 complement(1089395..1089916) 1 NC_010322.1 PFAM: protein of unknown function DUF615; KEGG: pen:PSEEN1082 hypothetical protein; hypothetical protein 1089916 5868708 PputGB1_0948 Pseudomonas putida GB-1 hypothetical protein YP_001667194.1 1089395 R 76869 CDS YP_001667195.1 167031964 5868709 1090026..1091372 1 NC_010322.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1083 peptidase U62 TldE; peptidase U62 modulator of DNA gyrase 1091372 5868709 PputGB1_0949 Pseudomonas putida GB-1 peptidase U62 modulator of DNA gyrase YP_001667195.1 1090026 D 76869 CDS YP_001667196.1 167031965 5868710 1091501..1091902 1 NC_010322.1 KEGG: pen:PSEEN1084 hypothetical protein; hypothetical protein 1091902 5868710 PputGB1_0950 Pseudomonas putida GB-1 hypothetical protein YP_001667196.1 1091501 D 76869 CDS YP_001667197.1 167031966 5868711 1091892..1093271 1 NC_010322.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1093271 fumC 5868711 fumC Pseudomonas putida GB-1 fumarate hydratase YP_001667197.1 1091892 D 76869 CDS YP_001667198.1 167031967 5868712 1093300..1093761 1 NC_010322.1 KEGG: pen:PSEEN1086 hypothetical protein; hypothetical protein 1093761 5868712 PputGB1_0952 Pseudomonas putida GB-1 hypothetical protein YP_001667198.1 1093300 D 76869 CDS YP_001667199.1 167031968 5868713 1093763..1094374 1 NC_010322.1 PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1087 superoxide dismutase; superoxide dismutase 1094374 5868713 PputGB1_0953 Pseudomonas putida GB-1 superoxide dismutase YP_001667199.1 1093763 D 76869 CDS YP_001667200.1 167031969 5868714 1094386..1095279 1 NC_010322.1 PFAM: zinc/iron permease; KEGG: pen:PSEEN1088 hypothetical protein; zinc/iron permease 1095279 5868714 PputGB1_0954 Pseudomonas putida GB-1 zinc/iron permease YP_001667200.1 1094386 D 76869 CDS YP_001667201.1 167031970 5868715 complement(1095325..1095597) 1 NC_010322.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pen:PSEEN1089 phosphocarrier protein (HPr-like) NPr; phosphotransferase system, phosphocarrier protein HPr 1095597 5868715 PputGB1_0955 Pseudomonas putida GB-1 phosphotransferase system, phosphocarrier protein HPr YP_001667201.1 1095325 R 76869 CDS YP_001667202.1 167031971 5868716 complement(1095617..1096471) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1090 uncharacterized ATPase; hypothetical protein 1096471 5868716 PputGB1_0956 Pseudomonas putida GB-1 hypothetical protein YP_001667202.1 1095617 R 76869 CDS YP_001667203.1 167031972 5868717 complement(1096474..1096938) 1 NC_010322.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pen:PSEEN1091 phosphotransferase system, nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 1096938 5868717 PputGB1_0957 Pseudomonas putida GB-1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001667203.1 1096474 R 76869 CDS YP_001667204.1 167031973 5868718 complement(1096951..1097259) 1 NC_010322.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pen:PSEEN1092 sigma N (sigma 54) modulator RpoX; sigma 54 modulation protein/ribosomal protein S30EA 1097259 5868718 PputGB1_0958 Pseudomonas putida GB-1 sigma 54 modulation protein/ribosomal protein S30EA YP_001667204.1 1096951 R 76869 CDS YP_001667205.1 167031974 5868719 complement(1097339..1098808) 1 NC_010322.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1098808 5868719 PputGB1_0959 Pseudomonas putida GB-1 RNA polymerase factor sigma-54 YP_001667205.1 1097339 R 76869 CDS YP_001667206.1 167031975 5868720 complement(1099008..1099733) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1094 ABC transporter, ATP-binding protein; ABC transporter-like protein 1099733 5868720 PputGB1_0960 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667206.1 1099008 R 76869 CDS YP_001667207.1 167031976 5868721 complement(1099734..1100258) 1 NC_010322.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: pen:PSEEN1095 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA 1100258 5868721 PputGB1_0961 Pseudomonas putida GB-1 lipopolysaccharide transport periplasmic protein LptA YP_001667207.1 1099734 R 76869 CDS YP_001667208.1 167031977 5868722 complement(1100245..1100817) 1 NC_010322.1 PFAM: protein of unknown function DUF1239; KEGG: pen:PSEEN1096 hypothetical protein; hypothetical protein 1100817 5868722 PputGB1_0962 Pseudomonas putida GB-1 hypothetical protein YP_001667208.1 1100245 R 76869 CDS YP_001667209.1 167031978 5868723 complement(1100826..1101350) 1 NC_010322.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pen:PSEEN1097 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1101350 5868723 PputGB1_0963 Pseudomonas putida GB-1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001667209.1 1100826 R 76869 CDS YP_001667210.1 167031979 5868724 complement(1101363..1102337) 1 NC_010322.1 KEGG: pen:PSEEN1098 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1102337 5868724 PputGB1_0964 Pseudomonas putida GB-1 KpsF/GutQ family protein YP_001667210.1 1101363 R 76869 CDS YP_001667211.1 167031980 5868725 1102586..1103395 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1099 toluene tolerance ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 1103395 5868725 PputGB1_0965 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667211.1 1102586 D 76869 CDS YP_001667212.1 167031981 5868726 1103395..1104192 1 NC_010322.1 PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN1100 toluene tolerance ABC efflux transporter, permease; hypothetical protein 1104192 5868726 PputGB1_0966 Pseudomonas putida GB-1 hypothetical protein YP_001667212.1 1103395 D 76869 CDS YP_001667213.1 167031982 5868727 1104192..1104677 1 NC_010322.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN1101 toluene tolerance ABC transporter, periplasmic substrate-binding protein; hypothetical protein 1104677 5868727 PputGB1_0967 Pseudomonas putida GB-1 hypothetical protein YP_001667213.1 1104192 D 76869 CDS YP_001667214.1 167031983 5868728 1104687..1105334 1 NC_010322.1 PFAM: toluene tolerance family protein; KEGG: pen:PSEEN1102 toluene tolerance protein Ttg2D; toluene tolerance family protein 1105334 5868728 PputGB1_0968 Pseudomonas putida GB-1 toluene tolerance family protein YP_001667214.1 1104687 D 76869 CDS YP_001667215.1 167031984 5868729 1105331..1105633 1 NC_010322.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN1103 toluene-tolerance protein TtgE; anti-sigma-factor antagonist 1105633 5868729 PputGB1_0969 Pseudomonas putida GB-1 anti-sigma-factor antagonist YP_001667215.1 1105331 D 76869 CDS YP_001667216.1 167031985 5868730 1105751..1105990 1 NC_010322.1 PFAM: BolA family protein; KEGG: pen:PSEEN1104 toluene-tolerance protein Ttg2F; BolA family protein 1105990 5868730 PputGB1_0970 Pseudomonas putida GB-1 BolA family protein YP_001667216.1 1105751 D 76869 CDS YP_001667217.1 167031986 5868731 1106014..1107279 1 NC_010322.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1107279 5868731 PputGB1_0971 Pseudomonas putida GB-1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001667217.1 1106014 D 76869 CDS YP_001667218.1 167031987 5868732 1107372..1108007 1 NC_010322.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1108007 hisG 5868732 hisG Pseudomonas putida GB-1 ATP phosphoribosyltransferase catalytic subunit YP_001667218.1 1107372 D 76869 CDS YP_001667219.1 167031988 5868733 1108134..1109459 1 NC_010322.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1109459 hisD 5868733 hisD Pseudomonas putida GB-1 histidinol dehydrogenase YP_001667219.1 1108134 D 76869 CDS YP_001667220.1 167031989 5868734 1109462..1110508 1 NC_010322.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1110508 5868734 PputGB1_0974 Pseudomonas putida GB-1 histidinol-phosphate aminotransferase YP_001667220.1 1109462 D 76869 CDS YP_001667221.1 167031990 5868735 complement(1110456..1111706) 1 NC_010322.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: hch:HCH_03222 protein containing hemopexin repeats; hypothetical protein 1111706 5868735 PputGB1_0975 Pseudomonas putida GB-1 hypothetical protein YP_001667221.1 1110456 R 76869 CDS YP_001667222.1 167031991 5868736 1111845..1112495 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN4453 transcriptional regulator, GntR family; GntR family transcriptional regulator 1112495 5868736 PputGB1_0976 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001667222.1 1111845 D 76869 CDS YP_001667223.1 167031992 5868737 1112509..1113789 1 NC_010322.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4452 cyanate MFS transporter; cyanate transporter 1113789 5868737 PputGB1_0977 Pseudomonas putida GB-1 cyanate transporter YP_001667223.1 1112509 D 76869 CDS YP_001667224.1 167031993 5868738 1113861..1114337 1 NC_010322.1 KEGG: pen:PSEEN4451 hypothetical protein; hypothetical protein 1114337 5868738 PputGB1_0978 Pseudomonas putida GB-1 hypothetical protein YP_001667224.1 1113861 D 76869 CDS YP_001667225.1 167031994 5868739 1114330..1114671 1 NC_010322.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: pen:PSEEN4450 endonuclease; GIY-YIG nuclease superfamily protein 1114671 5868739 PputGB1_0979 Pseudomonas putida GB-1 GIY-YIG nuclease superfamily protein YP_001667225.1 1114330 D 76869 CDS YP_001667226.1 167031995 5868740 complement(1114619..1115626) 1 NC_010322.1 PFAM: 37kDa nucleoid-associated protein; KEGG: pen:PSEEN4449 nucleoid-associated protein; nucleoid-associated protein NdpA 1115626 5868740 PputGB1_0980 Pseudomonas putida GB-1 nucleoid-associated protein NdpA YP_001667226.1 1114619 R 76869 CDS YP_001667227.1 167031996 5868741 1115997..1116278 1 NC_010322.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN4448 DNA-binding protein HU form N; histone family protein DNA-binding protein 1116278 5868741 PputGB1_0981 Pseudomonas putida GB-1 histone family protein DNA-binding protein YP_001667227.1 1115997 D 76869 CDS YP_001667228.1 167031997 5868742 complement(1116329..1117279) 1 NC_010322.1 PFAM: protein of unknown function DUF890; KEGG: pen:PSEEN4447 hypothetical protein; putative SAM-dependent methyltransferase 1117279 5868742 PputGB1_0982 Pseudomonas putida GB-1 putative SAM-dependent methyltransferase YP_001667228.1 1116329 R 76869 CDS YP_001667229.1 167031998 5868743 complement(1117442..1120288) 1 NC_010322.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1120288 valS 5868743 valS Pseudomonas putida GB-1 valyl-tRNA synthetase YP_001667229.1 1117442 R 76869 CDS YP_001667230.1 167031999 5868744 complement(1120453..1120818) 1 NC_010322.1 KEGG: pen:PSEEN4445 hypothetical protein; hypothetical protein 1120818 5868744 PputGB1_0984 Pseudomonas putida GB-1 hypothetical protein YP_001667230.1 1120453 R 76869 CDS YP_001667231.1 167032000 5868745 complement(1120824..1121252) 1 NC_010322.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1121252 5868745 PputGB1_0985 Pseudomonas putida GB-1 DNA polymerase III subunit chi YP_001667231.1 1120824 R 76869 CDS YP_001667232.1 167032001 5868746 complement(1121301..1122794) 1 NC_010322.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1122794 5868746 PputGB1_0986 Pseudomonas putida GB-1 leucyl aminopeptidase YP_001667232.1 1121301 R 76869 CDS YP_001667233.1 167032002 5868747 1123096..1124211 1 NC_010322.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4442 hypothetical protein; YjgP/YjgQ family permease 1124211 5868747 PputGB1_0987 Pseudomonas putida GB-1 YjgP/YjgQ family permease YP_001667233.1 1123096 D 76869 CDS YP_001667234.1 167032003 5868748 1124204..1125265 1 NC_010322.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4441 hypothetical protein; YjgP/YjgQ family permease 1125265 5868748 PputGB1_0988 Pseudomonas putida GB-1 YjgP/YjgQ family permease YP_001667234.1 1124204 D 76869 CDS YP_001667235.1 167032004 5868749 complement(1125326..1125814) 1 NC_010322.1 PFAM: RDD domain containing protein; KEGG: pen:PSEEN4440 hypothetical protein; RDD domain-containing protein 1125814 5868749 PputGB1_0989 Pseudomonas putida GB-1 RDD domain-containing protein YP_001667235.1 1125326 R 76869 CDS YP_001667236.1 167032005 5868750 complement(1125905..1126117) 1 NC_010322.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4439 cold shock protein; cold-shock DNA-binding domain-containing protein 1126117 5868750 PputGB1_0990 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001667236.1 1125905 R 76869 CDS YP_001667237.1 167032006 5868751 complement(1126476..1127597) 1 NC_010322.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pen:PSEEN4438 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent; glycine cleavage system T protein 1127597 5868751 PputGB1_0991 Pseudomonas putida GB-1 glycine cleavage system T protein YP_001667237.1 1126476 R 76869 CDS YP_001667238.1 167032007 5868752 complement(1127625..1129001) 1 NC_010322.1 KEGG: pen:PSEEN4437 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1129001 5868752 PputGB1_0992 Pseudomonas putida GB-1 L-serine dehydratase 1 YP_001667238.1 1127625 R 76869 CDS YP_001667239.1 167032008 5868753 complement(1129154..1132009) 1 NC_010322.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1132009 5868753 PputGB1_0993 Pseudomonas putida GB-1 glycine dehydrogenase YP_001667239.1 1129154 R 76869 CDS YP_001667240.1 167032009 5868754 complement(1132021..1132404) 1 NC_010322.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1132404 5868754 PputGB1_0994 Pseudomonas putida GB-1 glycine cleavage system protein H YP_001667240.1 1132021 R 76869 CDS YP_001667241.1 167032010 5868755 complement(1132683..1133888) 1 NC_010322.1 PFAM: sodium/glutamate symporter; KEGG: cvi:CV_1105 sodium/glutamate symport carrier protein; sodium/glutamate symporter 1133888 5868755 PputGB1_0995 Pseudomonas putida GB-1 sodium/glutamate symporter YP_001667241.1 1132683 R 76869 CDS YP_001667242.1 167032011 5868756 complement(1134016..1135524) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN4432 sigma-54 dependent transcriptional regulator; putative PAS/PAC sensor protein 1135524 5868756 PputGB1_0996 Pseudomonas putida GB-1 putative PAS/PAC sensor protein YP_001667242.1 1134016 R 76869 CDS YP_001667243.1 167032012 5868757 complement(1135684..1136052) 1 NC_010322.1 KEGG: pen:PSEEN4431 hypothetical protein; hypothetical protein 1136052 5868757 PputGB1_0997 Pseudomonas putida GB-1 hypothetical protein YP_001667243.1 1135684 R 76869 CDS YP_001667244.1 167032013 5868758 complement(1136109..1137038) 1 NC_010322.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1137038 5868758 PputGB1_0998 Pseudomonas putida GB-1 carbamate kinase YP_001667244.1 1136109 R 76869 CDS YP_001667245.1 167032014 5868759 complement(1137108..1138118) 1 NC_010322.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1138118 5868759 PputGB1_0999 Pseudomonas putida GB-1 ornithine carbamoyltransferase YP_001667245.1 1137108 R 76869 CDS YP_001667246.1 167032015 5868760 complement(1138188..1139447) 1 NC_010322.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1139447 5868760 PputGB1_1000 Pseudomonas putida GB-1 arginine deiminase YP_001667246.1 1138188 R 76869 CDS YP_001667247.1 167032016 5868761 complement(1139481..1140908) 1 NC_010322.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4427 arginine/ornithine antiporter; arginine/ornithine antiporter 1140908 5868761 PputGB1_1001 Pseudomonas putida GB-1 arginine/ornithine antiporter YP_001667247.1 1139481 R 76869 CDS YP_001667248.1 167032017 5868762 1141345..1142772 1 NC_010322.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4426 arginine/ornithine antiporter; arginine/ornithine antiporter 1142772 5868762 PputGB1_1002 Pseudomonas putida GB-1 arginine/ornithine antiporter YP_001667248.1 1141345 D 76869 CDS YP_001667249.1 167032018 5868763 complement(1142752..1143165) 1 NC_010322.1 PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN4424 hypothetical protein; hypothetical protein 1143165 5868763 PputGB1_1003 Pseudomonas putida GB-1 hypothetical protein YP_001667249.1 1142752 R 76869 CDS YP_001667250.1 167032019 5868764 complement(1143220..1143813) 1 NC_010322.1 PFAM: Haem oxygenase; KEGG: pen:PSEEN4423 heme oxygenase; heme oxygenase 1143813 5868764 PputGB1_1004 Pseudomonas putida GB-1 heme oxygenase YP_001667250.1 1143220 R 76869 CDS YP_001667251.1 167032020 5868765 complement(1144017..1146605) 1 NC_010322.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4422 TonB-dependent outer membrane heme receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 1146605 5868765 PputGB1_1005 Pseudomonas putida GB-1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_001667251.1 1144017 R 76869 CDS YP_001667252.1 167032021 5868766 complement(1146732..1147694) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN4421 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 1147694 5868766 PputGB1_1006 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667252.1 1146732 R 76869 CDS YP_001667253.1 167032022 5868767 complement(1147782..1148294) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4420 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1148294 5868767 PputGB1_1007 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667253.1 1147782 R 76869 CDS YP_001667254.1 167032023 5868768 complement(1148541..1149542) 1 NC_010322.1 KEGG: pen:PSEEN4418 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1149542 5868768 PputGB1_1008 Pseudomonas putida GB-1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001667254.1 1148541 R 76869 CDS YP_001667255.1 167032024 5868769 1149807..1151633 1 NC_010322.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1151633 5868769 PputGB1_1009 Pseudomonas putida GB-1 phosphogluconate dehydratase YP_001667255.1 1149807 D 76869 CDS YP_001667256.1 167032025 5868770 1151630..1152592 1 NC_010322.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1152592 glk 5868770 glk Pseudomonas putida GB-1 glucokinase YP_001667256.1 1151630 D 76869 CDS YP_001667257.1 167032026 5868771 1152758..1153483 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4415 two-component response regulator GltR; two component transcriptional regulator 1153483 5868771 PputGB1_1011 Pseudomonas putida GB-1 two component transcriptional regulator YP_001667257.1 1152758 D 76869 CDS YP_001667258.1 167032027 5868772 1153464..1154918 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4414 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1154918 5868772 PputGB1_1012 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001667258.1 1153464 D 76869 CDS YP_001667259.1 167032028 5868773 1155064..1156350 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4412 glucose ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 1156350 5868773 PputGB1_1013 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667259.1 1155064 D 76869 CDS YP_001667260.1 167032029 5868774 1156532..1157440 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4411 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1157440 5868774 PputGB1_1014 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667260.1 1156532 D 76869 CDS YP_001667261.1 167032030 5868775 1157433..1158278 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4410 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1158278 5868775 PputGB1_1015 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667261.1 1157433 D 76869 CDS YP_001667262.1 167032031 5868776 1158282..1159436 1 NC_010322.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN4409 glucose ABC transporter, ATP-binding subunit; ABC transporter-like protein 1159436 5868776 PputGB1_1016 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667262.1 1158282 D 76869 CDS YP_001667263.1 167032032 5868777 1159478..1160821 1 NC_010322.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN4408 glucose-selective porin OprB; carbohydrate-selective porin OprB 1160821 5868777 PputGB1_1017 Pseudomonas putida GB-1 carbohydrate-selective porin OprB YP_001667263.1 1159478 D 76869 CDS YP_001667264.1 167032033 5868778 1160939..1161793 1 NC_010322.1 PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN4407 hypothetical protein; aldose 1-epimerase 1161793 5868778 PputGB1_1018 Pseudomonas putida GB-1 aldose 1-epimerase YP_001667264.1 1160939 D 76869 CDS YP_001667265.1 167032034 5868779 complement(1161786..1162658) 1 NC_010322.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 1162658 5868779 PputGB1_1019 Pseudomonas putida GB-1 DNA-binding transcriptional regulator HexR YP_001667265.1 1161786 R 76869 CDS YP_001667266.1 167032035 5868780 1162861..1164330 1 NC_010322.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1164330 5868780 PputGB1_1020 Pseudomonas putida GB-1 glucose-6-phosphate 1-dehydrogenase YP_001667266.1 1162861 D 76869 CDS YP_001667267.1 167032036 5868781 1164317..1165030 1 NC_010322.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pen:PSEEN4404 6-phosphogluconolactonase; 6-phosphogluconolactonase 1165030 5868781 PputGB1_1021 Pseudomonas putida GB-1 6-phosphogluconolactonase YP_001667267.1 1164317 D 76869 CDS YP_001667268.1 167032037 5868782 1165048..1165728 1 NC_010322.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1165728 5868782 PputGB1_1022 Pseudomonas putida GB-1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001667268.1 1165048 D 76869 CDS YP_001667269.1 167032038 5868783 complement(1165883..1167556) 1 NC_010322.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pen:PSEEN4399 2-isopropylmalate synthase; 2-isopropylmalate synthase 1167556 5868783 PputGB1_1023 Pseudomonas putida GB-1 2-isopropylmalate synthase YP_001667269.1 1165883 R 76869 CDS YP_001667270.1 167032039 5868784 complement(1167928..1168755) 1 NC_010322.1 PFAM: peptidase M23B; KEGG: pen:PSEEN4398 peptidase, M23/M37 family; peptidase M23B 1168755 5868784 PputGB1_1024 Pseudomonas putida GB-1 peptidase M23B YP_001667270.1 1167928 R 76869 CDS YP_001667271.1 167032040 5868785 complement(1168759..1170150) 1 NC_010322.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1170150 xseA 5868785 xseA Pseudomonas putida GB-1 exodeoxyribonuclease VII large subunit YP_001667271.1 1168759 R 76869 CDS YP_001667272.1 167032041 5868786 complement(1170225..1171103) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4396 transcriptional regulator, LysR family; LysR family transcriptional regulator 1171103 5868786 PputGB1_1026 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667272.1 1170225 R 76869 CDS YP_001667273.1 167032042 5868787 1171201..1171956 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN4395 hypothetical protein; hypothetical protein 1171956 5868787 PputGB1_1027 Pseudomonas putida GB-1 hypothetical protein YP_001667273.1 1171201 D 76869 CDS YP_001667274.1 167032043 5868788 1172004..1172561 1 NC_010322.1 KEGG: pen:PSEEN4394 hypothetical protein; hypothetical protein 1172561 5868788 PputGB1_1028 Pseudomonas putida GB-1 hypothetical protein YP_001667274.1 1172004 D 76869 CDS YP_001667275.1 167032044 5868789 1172648..1174117 1 NC_010322.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1174117 5868789 PputGB1_1029 Pseudomonas putida GB-1 inosine 5'-monophosphate dehydrogenase YP_001667275.1 1172648 D 76869 CDS YP_001667276.1 167032045 5868790 1174196..1175773 1 NC_010322.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1175773 guaA 5868790 guaA Pseudomonas putida GB-1 GMP synthase YP_001667276.1 1174196 D 76869 CDS YP_001667277.1 167032046 5868791 1175978..1177360 1 NC_010322.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN4390 Mn2+ multicopper oxidase CumA; multicopper oxidase type 3 1177360 5868791 PputGB1_1031 Pseudomonas putida GB-1 multicopper oxidase type 3 YP_001667277.1 1175978 D 76869 CDS YP_001667278.1 167032047 5868792 1177360..1177839 1 NC_010322.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pen:PSEEN4389 cytidine/deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 1177839 5868792 PputGB1_1032 Pseudomonas putida GB-1 zinc-binding CMP/dCMP deaminase YP_001667278.1 1177360 D 76869 CDS YP_001667279.1 167032048 5868793 complement(1177851..1179308) 1 NC_010322.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1179308 5868793 PputGB1_1033 Pseudomonas putida GB-1 putative transglycosylase YP_001667279.1 1177851 R 76869 CDS YP_001667280.1 167032049 5868794 1179541..1183440 1 NC_010322.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1183440 5868794 PputGB1_1034 Pseudomonas putida GB-1 phosphoribosylformylglycinamidine synthase YP_001667280.1 1179541 D 76869 CDS YP_001667281.1 167032050 5868795 1183444..1183755 1 NC_010322.1 KEGG: pen:PSEEN4385 hypothetical protein; hypothetical protein 1183755 5868795 PputGB1_1035 Pseudomonas putida GB-1 hypothetical protein YP_001667281.1 1183444 D 76869 CDS YP_001667282.1 167032051 5868796 complement(1183796..1184557) 1 NC_010322.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pmy:Pmen_0516 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 1184557 5868796 PputGB1_1036 Pseudomonas putida GB-1 Sec-independent protein translocase subunit TatC YP_001667282.1 1183796 R 76869 CDS YP_001667283.1 167032052 5868797 complement(1184554..1184844) 1 NC_010322.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN5079 twin-arginin translocase subunit B; twin-arginine translocation protein subunit TatB 1184844 5868797 PputGB1_1037 Pseudomonas putida GB-1 twin-arginine translocation protein subunit TatB YP_001667283.1 1184554 R 76869 CDS YP_001667284.1 167032053 5868798 complement(1184844..1185077) 1 NC_010322.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN4376 twin-arginine translocation protein TatA; twin arginine-targeting protein translocase 1185077 5868798 PputGB1_1038 Pseudomonas putida GB-1 twin arginine-targeting protein translocase YP_001667284.1 1184844 R 76869 CDS YP_001667285.1 167032054 5868799 1185223..1186188 1 NC_010322.1 PFAM: General secretion pathway protein K; KEGG: pen:PSEEN4375 type II secretion system protein K (XcpX); general secretion pathway protein K 1186188 5868799 PputGB1_1039 Pseudomonas putida GB-1 general secretion pathway protein K YP_001667285.1 1185223 D 76869 CDS YP_001667286.1 167032055 5868800 complement(1186229..1188304) 1 NC_010322.1 PFAM: protein of unknown function DUF839; KEGG: pen:PSEEN4284 hypothetical protein; hypothetical protein 1188304 5868800 PputGB1_1040 Pseudomonas putida GB-1 hypothetical protein YP_001667286.1 1186229 R 76869 CDS YP_001667287.1 167032056 5868801 1188529..1190169 1 NC_010322.1 KEGG: pen:PSEEN4283 lipoprotein UxpA; lipoprotein UxpA 1190169 5868801 PputGB1_1041 Pseudomonas putida GB-1 lipoprotein UxpA YP_001667287.1 1188529 D 76869 CDS YP_001667288.1 167032057 5868802 1190166..1190591 1 NC_010322.1 KEGG: pen:PSEEN4282 type II secretion protein C; type II secretion protein C 1190591 5868802 PputGB1_1042 Pseudomonas putida GB-1 type II secretion protein C YP_001667288.1 1190166 D 76869 CDS YP_001667289.1 167032058 5868803 1190595..1192349 1 NC_010322.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN4281 type II secretion system protein D; general secretion pathway protein D 1192349 5868803 PputGB1_1043 Pseudomonas putida GB-1 general secretion pathway protein D YP_001667289.1 1190595 D 76869 CDS YP_001667290.1 167032059 5868804 1192349..1193797 1 NC_010322.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN4280 type II secretion system protein E; type II secretion system protein E 1193797 5868804 PputGB1_1044 Pseudomonas putida GB-1 type II secretion system protein E YP_001667290.1 1192349 D 76869 CDS YP_001667291.1 167032060 5868805 1193801..1195003 1 NC_010322.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pen:PSEEN4279 type II secretion system protein F; general secretion pathway protein F 1195003 5868805 PputGB1_1045 Pseudomonas putida GB-1 general secretion pathway protein F YP_001667291.1 1193801 D 76869 CDS YP_001667292.1 167032061 5868806 1195021..1195455 1 NC_010322.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN4278 type II secretion system protein G; general secretion pathway protein G 1195455 5868806 PputGB1_1046 Pseudomonas putida GB-1 general secretion pathway protein G YP_001667292.1 1195021 D 76869 CDS YP_001667293.1 167032062 5868807 1195459..1195890 1 NC_010322.1 TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN4277 type II secretion system protein H; general secretion pathway protein H 1195890 5868807 PputGB1_1047 Pseudomonas putida GB-1 general secretion pathway protein H YP_001667293.1 1195459 D 76869 CDS YP_001667294.1 167032063 5868808 1195887..1196255 1 NC_010322.1 PFAM: type II secretion system protein I/J; KEGG: pen:PSEEN4276 type II secretion system protein I; type II secretion system protein I/J 1196255 5868808 PputGB1_1048 Pseudomonas putida GB-1 type II secretion system protein I/J YP_001667294.1 1195887 D 76869 CDS YP_001667295.1 167032064 5868809 1196252..1196842 1 NC_010322.1 KEGG: pen:PSEEN4275 type II secretion system protein J; type II secretion system protein J 1196842 5868809 PputGB1_1049 Pseudomonas putida GB-1 type II secretion system protein J YP_001667295.1 1196252 D 76869 CDS YP_001667296.1 167032065 5868810 1196839..1197912 1 NC_010322.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: pen:PSEEN4274 type II secretion pathway protein L; general secretion pathway protein L 1197912 5868810 PputGB1_1050 Pseudomonas putida GB-1 general secretion pathway protein L YP_001667296.1 1196839 D 76869 CDS YP_001667297.1 167032066 5868811 1197909..1198295 1 NC_010322.1 KEGG: pen:PSEEN4273 type II secretion system protein M; type II secretion system protein M 1198295 5868811 PputGB1_1051 Pseudomonas putida GB-1 type II secretion system protein M YP_001667297.1 1197909 D 76869 CDS YP_001667298.1 167032067 5868812 1198292..1198951 1 NC_010322.1 PFAM: type II secretion system protein N; KEGG: pen:PSEEN4272 type II secretion system protein N; type II secretion system protein N 1198951 5868812 PputGB1_1052 Pseudomonas putida GB-1 type II secretion system protein N YP_001667298.1 1198292 D 76869 CDS YP_001667299.1 167032068 5868813 complement(1199022..1203548) 1 NC_010322.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pap:PSPA7_4642 hemolysin; filamentous hemagglutinin outer membrane protein 1203548 5868813 PputGB1_1053 Pseudomonas putida GB-1 filamentous hemagglutinin outer membrane protein YP_001667299.1 1199022 R 76869 CDS YP_001667300.1 167032069 5868815 complement(1205419..1205973) 1 NC_010322.1 KEGG: pen:PSEEN4271 hypothetical protein; hypothetical protein 1205973 5868815 PputGB1_1056 Pseudomonas putida GB-1 hypothetical protein YP_001667300.1 1205419 R 76869 CDS YP_001667301.1 167032070 5868816 complement(1205999..1206556) 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4270 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1206556 5868816 PputGB1_1057 Pseudomonas putida GB-1 NUDIX hydrolase YP_001667301.1 1205999 R 76869 CDS YP_001667302.1 167032071 5868817 1206680..1207279 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4269 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1207279 5868817 PputGB1_1058 Pseudomonas putida GB-1 NUDIX hydrolase YP_001667302.1 1206680 D 76869 CDS YP_001667303.1 167032072 5868818 1207324..1207848 1 NC_010322.1 KEGG: pen:PSEEN4268 transferase family protein; transferase 1207848 5868818 PputGB1_1059 Pseudomonas putida GB-1 transferase YP_001667303.1 1207324 D 76869 CDS YP_001667304.1 167032073 5868819 1207838..1208035 1 NC_010322.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN4267 hypothetical protein; hypothetical protein 1208035 5868819 PputGB1_1060 Pseudomonas putida GB-1 hypothetical protein YP_001667304.1 1207838 D 76869 CDS YP_001667305.1 167032074 5868820 1208100..1208567 1 NC_010322.1 KEGG: pen:PSEEN4266 hypothetical protein; hypothetical protein 1208567 5868820 PputGB1_1061 Pseudomonas putida GB-1 hypothetical protein YP_001667305.1 1208100 D 76869 CDS YP_001667306.1 167032075 5868821 1208644..1209825 1 NC_010322.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1209825 purT 5868821 purT Pseudomonas putida GB-1 phosphoribosylglycinamide formyltransferase 2 YP_001667306.1 1208644 D 76869 CDS YP_001667307.1 167032076 5868822 complement(1209858..1211156) 1 NC_010322.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4264 citrate-proton symporter (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 1211156 5868822 PputGB1_1063 Pseudomonas putida GB-1 major facilitator superfamily metabolite/H(+) symporter YP_001667307.1 1209858 R 76869 CDS YP_001667308.1 167032077 5868823 complement(1211431..1212636) 1 NC_010322.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN4263 hypothetical protein; transporter-associated protein 1212636 5868823 PputGB1_1064 Pseudomonas putida GB-1 transporter-associated protein YP_001667308.1 1211431 R 76869 CDS YP_001667309.1 167032078 5868824 complement(1212646..1213455) 1 NC_010322.1 PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN4262 cytochrome c assembly protein; cytochrome c assembly protein 1213455 5868824 PputGB1_1065 Pseudomonas putida GB-1 cytochrome c assembly protein YP_001667309.1 1212646 R 76869 CDS YP_001667310.1 167032079 5868825 1213686..1215062 1 NC_010322.1 KEGG: pen:PSEEN4261 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1215062 5868825 PputGB1_1066 Pseudomonas putida GB-1 signal recognition particle protein YP_001667310.1 1213686 D 76869 CDS YP_001667311.1 167032080 5868826 1215320..1215571 1 NC_010322.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1215571 rpsP 5868826 rpsP Pseudomonas putida GB-1 30S ribosomal protein S16 YP_001667311.1 1215320 D 76869 CDS YP_001667312.1 167032081 5868827 1215577..1216113 1 NC_010322.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1216113 rimM 5868827 rimM Pseudomonas putida GB-1 16S rRNA-processing protein RimM YP_001667312.1 1215577 D 76869 CDS YP_001667313.1 167032082 5868828 1216117..1216869 1 NC_010322.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1216869 trmD 5868828 trmD Pseudomonas putida GB-1 tRNA (guanine-N(1)-)-methyltransferase YP_001667313.1 1216117 D 76869 CDS YP_001667314.1 167032083 5868829 1216912..1217262 1 NC_010322.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1217262 rplS 5868829 rplS Pseudomonas putida GB-1 50S ribosomal protein L19 YP_001667314.1 1216912 D 76869 CDS YP_001667315.1 167032084 5868830 1217357..1217764 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4256 long-chain acyl-CoA thioester hydrolase; thioesterase superfamily protein 1217764 5868830 PputGB1_1071 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001667315.1 1217357 D 76869 CDS YP_001667316.1 167032085 5868831 complement(1217768..1219573) 1 NC_010322.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 1219573 5868831 PputGB1_1072 Pseudomonas putida GB-1 sodium/hydrogen exchanger YP_001667316.1 1217768 R 76869 CDS YP_001667317.1 167032086 5868832 1219642..1220538 1 NC_010322.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1220538 xerD 5868832 xerD Pseudomonas putida GB-1 site-specific tyrosine recombinase XerD YP_001667317.1 1219642 D 76869 CDS YP_001667318.1 167032087 5868833 1220692..1221435 1 NC_010322.1 KEGG: pen:PSEEN4253 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 1221435 5868833 PputGB1_1074 Pseudomonas putida GB-1 thiol:disulfide interchange protein DsbC YP_001667318.1 1220692 D 76869 CDS YP_001667319.1 167032088 5868834 1221519..1222823 1 NC_010322.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1222823 5868834 PputGB1_1075 Pseudomonas putida GB-1 homoserine dehydrogenase YP_001667319.1 1221519 D 76869 CDS YP_001667320.1 167032089 5868835 1222885..1224294 1 NC_010322.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1224294 5868835 PputGB1_1076 Pseudomonas putida GB-1 threonine synthase YP_001667320.1 1222885 D 76869 CDS YP_001667321.1 167032090 5868836 1224426..1224845 1 NC_010322.1 KEGG: pen:PSEEN4249 hypothetical protein; response regulator receiver protein 1224845 5868836 PputGB1_1077 Pseudomonas putida GB-1 response regulator receiver protein YP_001667321.1 1224426 D 76869 CDS YP_001667322.1 167032091 5868837 1224925..1225206 1 NC_010322.1 KEGG: pen:PSEEN4248 hypothetical protein; hypothetical protein 1225206 5868837 PputGB1_1078 Pseudomonas putida GB-1 hypothetical protein YP_001667322.1 1224925 D 76869 CDS YP_001667323.1 167032092 5868838 complement(1225391..1226266) 1 NC_010322.1 KEGG: pen:PSEEN4247 hypothetical protein; hypothetical protein 1226266 5868838 PputGB1_1079 Pseudomonas putida GB-1 hypothetical protein YP_001667323.1 1225391 R 76869 CDS YP_001667324.1 167032093 5868839 complement(1226287..1227486) 1 NC_010322.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN4246 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 1227486 5868839 PputGB1_1080 Pseudomonas putida GB-1 L-carnitine dehydratase/bile acid-inducible protein F YP_001667324.1 1226287 R 76869 CDS YP_001667325.1 167032094 5868840 1227618..1228160 1 NC_010322.1 PFAM: YaeQ family protein; KEGG: pen:PSEEN4245 hypothetical protein; YaeQ family protein 1228160 5868840 PputGB1_1081 Pseudomonas putida GB-1 YaeQ family protein YP_001667325.1 1227618 D 76869 CDS YP_001667326.1 167032095 5868841 1228169..1229878 1 NC_010322.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pen:PSEEN4244 ssDNA specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1229878 5868841 PputGB1_1082 Pseudomonas putida GB-1 single-stranded-DNA-specific exonuclease RecJ YP_001667326.1 1228169 D 76869 CDS YP_001667327.1 167032096 5868842 complement(1230643..1231506) 1 NC_010322.1 hypothetical protein 1231506 5868842 PputGB1_1083 Pseudomonas putida GB-1 hypothetical protein YP_001667327.1 1230643 R 76869 CDS YP_001667328.1 167032097 5868843 complement(1231503..1232096) 1 NC_010322.1 KEGG: bte:BTH_II1428 hypothetical protein; hypothetical protein 1232096 5868843 PputGB1_1084 Pseudomonas putida GB-1 hypothetical protein YP_001667328.1 1231503 R 76869 CDS YP_001667329.1 167032098 5868844 complement(1232371..1232634) 1 NC_010322.1 KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 1232634 5868844 PputGB1_1085 Pseudomonas putida GB-1 hypothetical protein YP_001667329.1 1232371 R 76869 CDS YP_001667330.1 167032099 5868845 1233330..1234436 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1235 oxidireductase; NADH:flavin oxidoreductase 1234436 5868845 PputGB1_1086 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001667330.1 1233330 D 76869 CDS YP_001667331.1 167032100 5868846 complement(1234506..1235951) 1 NC_010322.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1235951 5868846 PputGB1_1087 Pseudomonas putida GB-1 gamma-aminobutyraldehyde dehydrogenase YP_001667331.1 1234506 R 76869 CDS YP_001667332.1 167032101 5868847 complement(1235948..1236754) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1239 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1236754 5868847 PputGB1_1088 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667332.1 1235948 R 76869 CDS YP_001667333.1 167032102 5868848 complement(1236744..1237655) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1240 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1237655 5868848 PputGB1_1089 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667333.1 1236744 R 76869 CDS YP_001667334.1 167032103 5868849 complement(1237657..1238766) 1 NC_010322.1 KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1238766 5868849 PputGB1_1090 Pseudomonas putida GB-1 spermidine/putrescine ABC transporter ATPase YP_001667334.1 1237657 R 76869 CDS YP_001667335.1 167032104 5868850 complement(1238777..1239928) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1242 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 1239928 5868850 PputGB1_1091 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667335.1 1238777 R 76869 CDS YP_001667336.1 167032105 5868851 1240146..1240826 1 NC_010322.1 PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN1243 hypothetical protein; hypothetical protein 1240826 5868851 PputGB1_1092 Pseudomonas putida GB-1 hypothetical protein YP_001667336.1 1240146 D 76869 CDS YP_001667337.1 167032106 5868852 1240986..1242608 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1245 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1242608 5868852 PputGB1_1093 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001667337.1 1240986 D 76869 CDS YP_001667338.1 167032107 5868853 1242614..1243120 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN1246 chemotaxis signal transduction protein; CheW domain protein; CheW protein 1243120 5868853 PputGB1_1094 Pseudomonas putida GB-1 CheW protein YP_001667338.1 1242614 D 76869 CDS YP_001667339.1 167032108 5868854 1243117..1244391 1 NC_010322.1 PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN1247 methyltransferase, CheR-like; TPR repeat-containing CheR-type MCP methyltransferase 1244391 5868854 PputGB1_1095 Pseudomonas putida GB-1 TPR repeat-containing CheR-type MCP methyltransferase YP_001667339.1 1243117 D 76869 CDS YP_001667340.1 167032109 5868855 1244388..1245053 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN1248 chemotaxis signal transduction protein; CheW domain protein; CheW protein 1245053 5868855 PputGB1_1096 Pseudomonas putida GB-1 CheW protein YP_001667340.1 1244388 D 76869 CDS YP_001667341.1 167032110 5868856 1245050..1247353 1 NC_010322.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN1249 sensor histidine kinase/response regulator hybrid; CheA signal transduction histidine kinase 1247353 5868856 PputGB1_1097 Pseudomonas putida GB-1 CheA signal transduction histidine kinase YP_001667341.1 1245050 D 76869 CDS YP_001667342.1 167032111 5868857 1247350..1248363 1 NC_010322.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1248363 5868857 PputGB1_1098 Pseudomonas putida GB-1 chemotaxis-specific methylesterase YP_001667342.1 1247350 D 76869 CDS YP_001667343.1 167032112 5868858 1248415..1249419 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN1251 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase 1249419 5868858 PputGB1_1099 Pseudomonas putida GB-1 response regulator receiver modulated diguanylate cyclase YP_001667343.1 1248415 D 76869 CDS YP_001667344.1 167032113 5868859 1249732..1250646 1 NC_010322.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pen:PSEEN1254 peptide chain release factor 2; peptide chain release factor 2 1250646 5868859 PputGB1_1100 Pseudomonas putida GB-1 peptide chain release factor 2 YP_001667344.1 1249732 D 76869 CDS YP_001667345.1 167032114 5868860 1250740..1252242 1 NC_010322.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1252242 lysS 5868860 lysS Pseudomonas putida GB-1 lysyl-tRNA synthetase YP_001667345.1 1250740 D 76869 CDS YP_001667346.1 167032115 5868861 1252387..1253091 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1256 transcriptional regulator, TetR family; TetR family transcriptional regulator 1253091 5868861 PputGB1_1102 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001667346.1 1252387 D 76869 CDS YP_001667347.1 167032116 5868862 1253121..1253669 1 NC_010322.1 KEGG: pen:PSEEN1257 lipoprotein; lipoprotein 1253669 5868862 PputGB1_1103 Pseudomonas putida GB-1 lipoprotein YP_001667347.1 1253121 D 76869 CDS YP_001667348.1 167032117 5868863 1253721..1254998 1 NC_010322.1 PFAM: protein of unknown function DUF1704; KEGG: pen:PSEEN1258 hypothetical protein; hypothetical protein 1254998 5868863 PputGB1_1104 Pseudomonas putida GB-1 hypothetical protein YP_001667348.1 1253721 D 76869 CDS YP_001667349.1 167032118 5868864 1254970..1255893 1 NC_010322.1 KEGG: pen:PSEEN1259 lipoprotein; lipoprotein 1255893 5868864 PputGB1_1105 Pseudomonas putida GB-1 lipoprotein YP_001667349.1 1254970 D 76869 CDS YP_001667350.1 167032119 5868865 1255890..1256216 1 NC_010322.1 KEGG: pen:PSEEN1260 hypothetical protein; hypothetical protein 1256216 5868865 PputGB1_1106 Pseudomonas putida GB-1 hypothetical protein YP_001667350.1 1255890 D 76869 CDS YP_001667351.1 167032120 5868866 complement(1256321..1257112) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1261 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein 1257112 5868866 PputGB1_1107 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001667351.1 1256321 R 76869 CDS YP_001667352.1 167032121 5868867 complement(1257163..1257576) 1 NC_010322.1 KEGG: pen:PSEEN1262 hypothetical protein; hypothetical protein 1257576 5868867 PputGB1_1108 Pseudomonas putida GB-1 hypothetical protein YP_001667352.1 1257163 R 76869 CDS YP_001667353.1 167032122 5868868 complement(1257851..1258195) 1 NC_010322.1 KEGG: pen:PSEEN1263 hypothetical protein; hypothetical protein 1258195 5868868 PputGB1_1109 Pseudomonas putida GB-1 hypothetical protein YP_001667353.1 1257851 R 76869 CDS YP_001667354.1 167032123 5868869 1258361..1260988 1 NC_010322.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1260988 5868869 PputGB1_1110 Pseudomonas putida GB-1 phosphoenolpyruvate carboxylase YP_001667354.1 1258361 D 76869 CDS YP_001667355.1 167032124 5868870 1261246..1261896 1 NC_010322.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1261896 adk 5868870 adk Pseudomonas putida GB-1 adenylate kinase YP_001667355.1 1261246 D 76869 CDS YP_001667356.1 167032125 5868871 1261988..1262662 1 NC_010322.1 PFAM: peptidase M22 glycoprotease; KEGG: pen:PSEEN1266 glycoprotein endopeptidase metalloprotease; peptidase M22 glycoprotease 1262662 5868871 PputGB1_1112 Pseudomonas putida GB-1 peptidase M22 glycoprotease YP_001667356.1 1261988 D 76869 CDS YP_001667357.1 167032126 5868872 1262794..1263084 1 NC_010322.1 KEGG: pen:PSEEN1267 hypothetical protein; hypothetical protein 1263084 5868872 PputGB1_1113 Pseudomonas putida GB-1 hypothetical protein YP_001667357.1 1262794 D 76869 CDS YP_001667358.1 167032127 5868873 1263088..1263957 1 NC_010322.1 PFAM: protein of unknown function DUF72; KEGG: pen:PSEEN1268 hypothetical protein; hypothetical protein 1263957 5868873 PputGB1_1114 Pseudomonas putida GB-1 hypothetical protein YP_001667358.1 1263088 D 76869 CDS YP_001667359.1 167032128 5868874 1263986..1264816 1 NC_010322.1 KEGG: pen:PSEEN1269 carboxyvinyl-carboxyphosphonate phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase 1264816 5868874 PputGB1_1115 Pseudomonas putida GB-1 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_001667359.1 1263986 D 76869 CDS YP_001667360.1 167032129 5868875 1264816..1265505 1 NC_010322.1 PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein; extensin family protein 1265505 5868875 PputGB1_1116 Pseudomonas putida GB-1 extensin family protein YP_001667360.1 1264816 D 76869 CDS YP_001667361.1 167032130 5868876 complement(1265508..1266128) 1 NC_010322.1 KEGG: pen:PSEEN1270 hypothetical protein; hypothetical protein 1266128 5868876 PputGB1_1117 Pseudomonas putida GB-1 hypothetical protein YP_001667361.1 1265508 R 76869 CDS YP_001667362.1 167032131 5868877 1266232..1267008 1 NC_010322.1 PFAM: protein of unknown function DUF548; KEGG: pen:PSEEN1271 hypothetical protein; hypothetical protein 1267008 5868877 PputGB1_1118 Pseudomonas putida GB-1 hypothetical protein YP_001667362.1 1266232 D 76869 CDS YP_001667363.1 167032132 5868878 complement(1267241..1267882) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN4243 transcriptional regulator, TetR family; TetR family transcriptional regulator 1267882 5868878 PputGB1_1119 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001667363.1 1267241 R 76869 CDS YP_001667364.1 167032133 5868879 1268120..1269505 1 NC_010322.1 KEGG: pap:PSPA7_2933 hypothetical protein; hypothetical protein 1269505 5868879 PputGB1_1120 Pseudomonas putida GB-1 hypothetical protein YP_001667364.1 1268120 D 76869 CDS YP_001667365.1 167032134 5868880 complement(1269542..1270783) 1 NC_010322.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pau:PA14_34580 putative flavin reductase dependent enzyme; type 2 acyl-CoA dehydrogenase 1270783 5868880 PputGB1_1121 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001667365.1 1269542 R 76869 CDS YP_001667366.1 167032135 5868881 1271067..1272167 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 1272167 5868881 PputGB1_1122 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001667366.1 1271067 D 76869 CDS YP_001667367.1 167032136 5868882 1272174..1275239 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4240 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 1275239 5868882 PputGB1_1123 Pseudomonas putida GB-1 acriflavin resistance protein YP_001667367.1 1272174 D 76869 CDS YP_001667368.1 167032137 5868883 complement(1275276..1275965) 1 NC_010322.1 KEGG: pen:PSEEN4239 hypothetical protein; hypothetical protein 1275965 5868883 PputGB1_1124 Pseudomonas putida GB-1 hypothetical protein YP_001667368.1 1275276 R 76869 CDS YP_001667369.1 167032138 5868884 complement(1275999..1276397) 1 NC_010322.1 KEGG: pen:PSEEN4238 lipoprotein; lipoprotein 1276397 5868884 PputGB1_1125 Pseudomonas putida GB-1 lipoprotein YP_001667369.1 1275999 R 76869 CDS YP_001667370.1 167032139 5868885 complement(1276474..1278960) 1 NC_010322.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 1278960 5868885 PputGB1_1126 Pseudomonas putida GB-1 glycerol-3-phosphate acyltransferase YP_001667370.1 1276474 R 76869 CDS YP_001667371.1 167032140 5868886 1279194..1279403 1 NC_010322.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4235 cold shock protein CspE-like; cold-shock DNA-binding domain-containing protein 1279403 5868886 PputGB1_1127 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001667371.1 1279194 D 76869 CDS YP_001667372.1 167032141 5868887 complement(1279468..1279845) 1 NC_010322.1 KEGG: pen:PSEEN4234 hypothetical protein; hypothetical protein 1279845 5868887 PputGB1_1128 Pseudomonas putida GB-1 hypothetical protein YP_001667372.1 1279468 R 76869 CDS YP_001667373.1 167032142 5868888 complement(1279864..1280676) 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4233 23S rRNA m1G745 methyltransferase RrmA; rRNA (guanine-N(1)-)-methyltransferase 1280676 5868888 PputGB1_1129 Pseudomonas putida GB-1 rRNA (guanine-N(1)-)-methyltransferase YP_001667373.1 1279864 R 76869 CDS YP_001667374.1 167032143 5868889 complement(1280676..1281827) 1 NC_010322.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1281827 5868889 PputGB1_1130 Pseudomonas putida GB-1 succinyl-diaminopimelate desuccinylase YP_001667374.1 1280676 R 76869 CDS YP_001667375.1 167032144 5868890 1282034..1282681 1 NC_010322.1 KEGG: bch:Bcen2424_1753 protein of unknown function DUF1120; hypothetical protein 1282681 5868890 PputGB1_1131 Pseudomonas putida GB-1 hypothetical protein YP_001667375.1 1282034 D 76869 CDS YP_001667376.1 167032145 5868891 1282788..1283501 1 NC_010322.1 PFAM: pili assembly chaperone; KEGG: spe:Spro_2407 pili assembly chaperone; pili assembly chaperone 1283501 5868891 PputGB1_1132 Pseudomonas putida GB-1 pili assembly chaperone YP_001667376.1 1282788 D 76869 CDS YP_001667377.1 167032146 5868892 1283546..1285897 1 NC_010322.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_1679 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 1285897 5868892 PputGB1_1133 Pseudomonas putida GB-1 fimbrial biogenesis outer membrane usher protein YP_001667377.1 1283546 D 76869 CDS YP_001667378.1 167032147 5868893 1285863..1287011 1 NC_010322.1 KEGG: bcn:Bcen_6326 protein of unknown function DUF1120; hypothetical protein 1287011 5868893 PputGB1_1134 Pseudomonas putida GB-1 hypothetical protein YP_001667378.1 1285863 D 76869 CDS YP_001667379.1 167032148 5868894 complement(1287042..1289630) 1 NC_010322.1 PFAM: glycoside hydrolase family 17; glycosyl transferase family 2; KEGG: pen:PSEEN4231 glycosyl transferase; glycosyl transferase family protein 1289630 5868894 PputGB1_1135 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001667379.1 1287042 R 76869 CDS YP_001667380.1 167032149 5868895 1289750..1290559 1 NC_010322.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pen:PSEEN4230 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 1290559 5868895 PputGB1_1136 Pseudomonas putida GB-1 UBA/THIF-type NAD/FAD binding protein YP_001667380.1 1289750 D 76869 CDS YP_001667381.1 167032150 5868896 complement(1290722..1291132) 1 NC_010322.1 PFAM: Fe-S metabolism associated SufE; KEGG: pen:PSEEN4229 hypothetical protein; Fe-S metabolism associated SufE 1291132 5868896 PputGB1_1137 Pseudomonas putida GB-1 Fe-S metabolism associated SufE YP_001667381.1 1290722 R 76869 CDS YP_001667382.1 167032151 5868897 complement(1291129..1292334) 1 NC_010322.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN4228 cysteine sulfinate desulfinase; class V aminotransferase 1292334 5868897 PputGB1_1138 Pseudomonas putida GB-1 class V aminotransferase YP_001667382.1 1291129 R 76869 CDS YP_001667383.1 167032152 5868898 complement(1292416..1293450) 1 NC_010322.1 KEGG: pen:PSEEN4227 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1293450 5868898 PputGB1_1139 Pseudomonas putida GB-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001667383.1 1292416 R 76869 CDS YP_001667384.1 167032153 5868899 complement(1293482..1293838) 1 NC_010322.1 PFAM: arsenate reductase and related; KEGG: pen:PSEEN4226 hypothetical protein; arsenate reductase-like protein 1293838 5868899 PputGB1_1140 Pseudomonas putida GB-1 arsenate reductase-like protein YP_001667384.1 1293482 R 76869 CDS YP_001667385.1 167032154 5868900 1294138..1295784 1 NC_010322.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4225 sodium:hydrogen antiporter (CPA1 family); Na+/H+ antiporter 1295784 5868900 PputGB1_1141 Pseudomonas putida GB-1 Na+/H+ antiporter YP_001667385.1 1294138 D 76869 CDS YP_001667386.1 167032155 5868901 complement(1295841..1296071) 1 NC_010322.1 PFAM: Calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein 1296071 5868901 PputGB1_1142 Pseudomonas putida GB-1 calcium-binding EF-hand-containing protein YP_001667386.1 1295841 R 76869 CDS YP_001667387.1 167032156 5868902 complement(1296213..1297412) 1 NC_010322.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1297412 5868902 PputGB1_1143 Pseudomonas putida GB-1 succinyldiaminopimelate transaminase YP_001667387.1 1296213 R 76869 CDS YP_001667388.1 167032157 5868903 complement(1297443..1300145) 1 NC_010322.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1300145 glnD 5868903 glnD Pseudomonas putida GB-1 PII uridylyl-transferase YP_001667388.1 1297443 R 76869 CDS YP_001667389.1 167032158 5868904 complement(1300188..1300970) 1 NC_010322.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1300970 5868904 PputGB1_1145 Pseudomonas putida GB-1 methionine aminopeptidase YP_001667389.1 1300188 R 76869 CDS YP_001667390.1 167032159 5868906 1301316..1302053 1 NC_010322.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1302053 rpsB 5868906 rpsB Pseudomonas putida GB-1 30S ribosomal protein S2 YP_001667390.1 1301316 D 76869 CDS YP_001667391.1 167032160 5868907 1302239..1303102 1 NC_010322.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1303102 tsf 5868907 tsf Pseudomonas putida GB-1 elongation factor Ts YP_001667391.1 1302239 D 76869 CDS YP_001667392.1 167032161 5868908 1303283..1304026 1 NC_010322.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1304026 pyrH 5868908 pyrH Pseudomonas putida GB-1 uridylate kinase YP_001667392.1 1303283 D 76869 CDS YP_001667393.1 167032162 5868909 1304023..1304580 1 NC_010322.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1304580 frr 5868909 frr Pseudomonas putida GB-1 ribosome recycling factor YP_001667393.1 1304023 D 76869 CDS YP_001667394.1 167032163 5868910 1304596..1305351 1 NC_010322.1 KEGG: pen:PSEEN4216 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1305351 5868910 PputGB1_1150 Pseudomonas putida GB-1 undecaprenyl diphosphate synthase YP_001667394.1 1304596 D 76869 CDS YP_001667395.1 167032164 5868911 1305351..1306166 1 NC_010322.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pen:PSEEN4215 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1306166 5868911 PputGB1_1151 Pseudomonas putida GB-1 phosphatidate cytidylyltransferase YP_001667395.1 1305351 D 76869 CDS YP_001667396.1 167032165 5868912 1306163..1307353 1 NC_010322.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1307353 5868912 PputGB1_1152 Pseudomonas putida GB-1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001667396.1 1306163 D 76869 CDS YP_001667397.1 167032166 5868913 1307425..1308777 1 NC_010322.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: pen:PSEEN4213 membrane-associated Zn-dependent proteases 1; membrane-associated zinc metalloprotease 1308777 5868913 PputGB1_1153 Pseudomonas putida GB-1 membrane-associated zinc metalloprotease YP_001667397.1 1307425 D 76869 CDS YP_001667398.1 167032167 5868914 1308852..1311215 1 NC_010322.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN4212 outer membrane protein, bacterial surface antigen family; outer membrane protein assembly complex, YaeT protein 1311215 5868914 PputGB1_1154 Pseudomonas putida GB-1 outer membrane protein assembly complex, YaeT protein YP_001667398.1 1308852 D 76869 CDS YP_001667399.1 167032168 5868915 1311260..1311763 1 NC_010322.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pen:PSEEN4211 outer membrane protein OmpH-like; outer membrane chaperone Skp 1311763 5868915 PputGB1_1155 Pseudomonas putida GB-1 outer membrane chaperone Skp YP_001667399.1 1311260 D 76869 CDS YP_001667400.1 167032169 5868916 1311765..1312820 1 NC_010322.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1312820 lpxD 5868916 lpxD Pseudomonas putida GB-1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001667400.1 1311765 D 76869 CDS YP_001667401.1 167032170 5868917 1312935..1313375 1 NC_010322.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1313375 fabZ 5868917 fabZ Pseudomonas putida GB-1 (3R)-hydroxymyristoyl-ACP dehydratase YP_001667401.1 1312935 D 76869 CDS YP_001667402.1 167032171 5868918 1313372..1314148 1 NC_010322.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1314148 5868918 PputGB1_1158 Pseudomonas putida GB-1 UDP-N-acetylglucosamine acyltransferase YP_001667402.1 1313372 D 76869 CDS YP_001667403.1 167032172 5868919 1314150..1315277 1 NC_010322.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1315277 lpxB 5868919 lpxB Pseudomonas putida GB-1 lipid-A-disaccharide synthase YP_001667403.1 1314150 D 76869 CDS YP_001667404.1 167032173 5868920 1315279..1315902 1 NC_010322.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1315902 rnhB 5868920 rnhB Pseudomonas putida GB-1 ribonuclease HII YP_001667404.1 1315279 D 76869 CDS YP_001667405.1 167032174 5868921 1316081..1319605 1 NC_010322.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1319605 dnaE 5868921 dnaE Pseudomonas putida GB-1 DNA polymerase III subunit alpha YP_001667405.1 1316081 D 76869 CDS YP_001667406.1 167032175 5868922 1319707..1320660 1 NC_010322.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1320660 5868922 PputGB1_1162 Pseudomonas putida GB-1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001667406.1 1319707 D 76869 CDS YP_001667407.1 167032176 5868923 1320802..1322085 1 NC_010322.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: pen:PSEEN4203 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 1322085 5868923 PputGB1_1163 Pseudomonas putida GB-1 tRNA(Ile)-lysidine synthetase YP_001667407.1 1320802 D 76869 CDS YP_001667408.1 167032177 5868924 1322355..1323983 1 NC_010322.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1323983 pyrG 5868924 pyrG Pseudomonas putida GB-1 CTP synthetase YP_001667408.1 1322355 D 76869 CDS YP_001667409.1 167032178 5868925 1323987..1324832 1 NC_010322.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1324832 5868925 PputGB1_1165 Pseudomonas putida GB-1 2-dehydro-3-deoxyphosphooctonate aldolase YP_001667409.1 1323987 D 76869 CDS YP_001667410.1 167032179 5868926 1324987..1326276 1 NC_010322.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1326276 eno 5868926 eno Pseudomonas putida GB-1 phosphopyruvate hydratase YP_001667410.1 1324987 D 76869 CDS YP_001667411.1 167032180 5868927 1326443..1326724 1 NC_010322.1 PFAM: Septum formation initiator; KEGG: pen:PSEEN4199 cell division protein FtsB-like; septum formation initiator 1326724 5868927 PputGB1_1167 Pseudomonas putida GB-1 septum formation initiator YP_001667411.1 1326443 D 76869 CDS YP_001667412.1 167032181 5868928 1326721..1327428 1 NC_010322.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1327428 ispD 5868928 ispD Pseudomonas putida GB-1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001667412.1 1326721 D 76869 CDS YP_001667413.1 167032182 5868929 complement(1327498..1328394) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4197 transcriptional regulator, LysR family; LysR family transcriptional regulator 1328394 5868929 PputGB1_1169 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667413.1 1327498 R 76869 CDS YP_001667414.1 167032183 5868930 1328502..1329614 1 NC_010322.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN4196 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 1329614 5868930 PputGB1_1170 Pseudomonas putida GB-1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_001667414.1 1328502 D 76869 CDS YP_001667415.1 167032184 5868931 1329623..1330477 1 NC_010322.1 KEGG: pen:PSEEN4195 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 1330477 5868931 PputGB1_1171 Pseudomonas putida GB-1 S-formylglutathione hydrolase YP_001667415.1 1329623 D 76869 CDS YP_001667416.1 167032185 5868932 1330554..1331027 1 NC_010322.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1331027 ispF 5868932 ispF Pseudomonas putida GB-1 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_001667416.1 1330554 D 76869 CDS YP_001667417.1 167032186 5868933 1331024..1332082 1 NC_010322.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1332082 truD 5868933 truD Pseudomonas putida GB-1 tRNA pseudouridine synthase D YP_001667417.1 1331024 D 76869 CDS YP_001667418.1 167032187 5868934 1332070..1332819 1 NC_010322.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1332819 surE 5868934 surE Pseudomonas putida GB-1 stationary phase survival protein SurE YP_001667418.1 1332070 D 76869 CDS YP_001667419.1 167032188 5868935 1332819..1333493 1 NC_010322.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1333493 pcm 5868935 pcm Pseudomonas putida GB-1 protein-L-isoaspartate O-methyltransferase YP_001667419.1 1332819 D 76869 CDS YP_001667420.1 167032189 5868936 1333723..1334580 1 NC_010322.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pen:PSEEN4190 peptidase M23B; peptidase M23B 1334580 5868936 PputGB1_1176 Pseudomonas putida GB-1 peptidase M23B YP_001667420.1 1333723 D 76869 CDS YP_001667421.1 167032190 5868937 1334689..1335696 1 NC_010322.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1335696 5868937 PputGB1_1177 Pseudomonas putida GB-1 RNA polymerase sigma factor RpoS YP_001667421.1 1334689 D 76869 CDS YP_001667422.1 167032191 5868938 complement(1336231..1336554) 1 NC_010322.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN4188 ferredoxin; 4Fe-4S ferredoxin 1336554 5868938 PputGB1_1178 Pseudomonas putida GB-1 4Fe-4S ferredoxin YP_001667422.1 1336231 R 76869 CDS YP_001667423.1 167032192 5868939 complement(1336695..1339337) 1 NC_010322.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1339337 5868939 PputGB1_1179 Pseudomonas putida GB-1 DNA mismatch repair protein MutS YP_001667423.1 1336695 R 76869 CDS YP_001667424.1 167032193 5868940 1339482..1340501 1 NC_010322.1 hypothetical protein 1340501 5868940 PputGB1_1180 Pseudomonas putida GB-1 hypothetical protein YP_001667424.1 1339482 D 76869 CDS YP_001667425.1 167032194 5868941 complement(1341043..1342296) 1 NC_010322.1 PFAM: integrase family protein; KEGG: esa:ESA_01608 hypothetical protein; integrase family protein 1342296 5868941 PputGB1_1181 Pseudomonas putida GB-1 integrase family protein YP_001667425.1 1341043 R 76869 CDS YP_001667426.1 167032195 5868942 complement(1342266..1342460) 1 NC_010322.1 KEGG: bbr:BB3542 putative phage excisionase; putative phage excisionase 1342460 5868942 PputGB1_1182 Pseudomonas putida GB-1 putative phage excisionase YP_001667426.1 1342266 R 76869 CDS YP_001667427.1 167032196 5868943 complement(1342457..1343071) 1 NC_010322.1 KEGG: rsq:Rsph17025_1730 hypothetical protein; hypothetical protein 1343071 5868943 PputGB1_1183 Pseudomonas putida GB-1 hypothetical protein YP_001667427.1 1342457 R 76869 CDS YP_001667428.1 167032197 5868944 complement(1343446..1343646) 1 NC_010322.1 hypothetical protein 1343646 5868944 PputGB1_1184 Pseudomonas putida GB-1 hypothetical protein YP_001667428.1 1343446 R 76869 CDS YP_001667429.1 167032198 5868945 complement(1343643..1345322) 1 NC_010322.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 1345322 5868945 PputGB1_1185 Pseudomonas putida GB-1 C-5 cytosine-specific DNA methylase YP_001667429.1 1343643 R 76869 CDS YP_001667430.1 167032199 5868946 complement(1345570..1346067) 1 NC_010322.1 hypothetical protein 1346067 5868946 PputGB1_1186 Pseudomonas putida GB-1 hypothetical protein YP_001667430.1 1345570 R 76869 CDS YP_001667431.1 167032200 5868947 complement(1346151..1346399) 1 NC_010322.1 KEGG: psb:Psyr_4605 transcriptional regulator PrtN, putative; transcriptional regulator PrtN 1346399 5868947 PputGB1_1187 Pseudomonas putida GB-1 transcriptional regulator PrtN YP_001667431.1 1346151 R 76869 CDS YP_001667432.1 167032201 5868948 complement(1347207..1347911) 1 NC_010322.1 PFAM: peptidase S24 and S26 domain protein; KEGG: bvi:Bcep1808_1159 putative phage repressor; putative phage repressor 1347911 5868948 PputGB1_1188 Pseudomonas putida GB-1 putative phage repressor YP_001667432.1 1347207 R 76869 CDS YP_001667433.1 167032202 5868949 1348009..1348233 1 NC_010322.1 KEGG: net:Neut_1483 hypothetical protein; hypothetical protein 1348233 5868949 PputGB1_1189 Pseudomonas putida GB-1 hypothetical protein YP_001667433.1 1348009 D 76869 CDS YP_001667434.1 167032203 5868950 1348363..1348851 1 NC_010322.1 KEGG: pmy:Pmen_3981 hypothetical protein; hypothetical protein 1348851 5868950 PputGB1_1190 Pseudomonas putida GB-1 hypothetical protein YP_001667434.1 1348363 D 76869 CDS YP_001667435.1 167032204 5868951 1349044..1351806 1 NC_010322.1 PFAM: Bifunctional DNA primase/polymerase; KEGG: hch:HCH_02881 hypothetical protein; bifunctional DNA primase/polymerase 1351806 5868951 PputGB1_1191 Pseudomonas putida GB-1 bifunctional DNA primase/polymerase YP_001667435.1 1349044 D 76869 CDS YP_001667436.1 167032205 5868952 1352131..1352682 1 NC_010322.1 KEGG: psb:Psyr_4602 hypothetical protein; hypothetical protein 1352682 5868952 PputGB1_1192 Pseudomonas putida GB-1 hypothetical protein YP_001667436.1 1352131 D 76869 CDS YP_001667437.1 167032206 5868953 1352887..1353234 1 NC_010322.1 KEGG: pen:PSEEN4184 pyocin R2_PP, holin; pyocin R2_PP, holin 1353234 5868953 PputGB1_1193 Pseudomonas putida GB-1 pyocin R2_PP, holin YP_001667437.1 1352887 D 76869 CDS YP_001667438.1 167032207 5868954 1353395..1353976 1 NC_010322.1 KEGG: pfl:PFL_1992 hypothetical protein; hypothetical protein 1353976 5868954 PputGB1_1194 Pseudomonas putida GB-1 hypothetical protein YP_001667438.1 1353395 D 76869 CDS YP_001667439.1 167032208 5868955 1353981..1356023 1 NC_010322.1 PFAM: terminase GpA; KEGG: pst:PSPTO_3412 terminase, large subunit; terminase GpA 1356023 5868955 PputGB1_1195 Pseudomonas putida GB-1 terminase GpA YP_001667439.1 1353981 D 76869 CDS YP_001667440.1 167032209 5868956 1356025..1356231 1 NC_010322.1 KEGG: pst:PSPTO_3411 hypothetical protein; hypothetical protein 1356231 5868956 PputGB1_1196 Pseudomonas putida GB-1 hypothetical protein YP_001667440.1 1356025 D 76869 CDS YP_001667441.1 167032210 5868957 1356243..1357709 1 NC_010322.1 TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: pst:PSPTO_3410 portal protein; lambda family phage portal protein 1357709 5868957 PputGB1_1197 Pseudomonas putida GB-1 lambda family phage portal protein YP_001667441.1 1356243 D 76869 CDS YP_001667442.1 167032211 5868958 1357706..1358857 1 NC_010322.1 PFAM: peptidase S14 ClpP; KEGG: pst:PSPTO_3409 ATP-dependent Clp protease, proteolytic subunit ClpP; peptidase S14 ClpP 1358857 5868958 PputGB1_1198 Pseudomonas putida GB-1 peptidase S14 ClpP YP_001667442.1 1357706 D 76869 CDS YP_001667443.1 167032212 5868959 1358854..1359201 1 NC_010322.1 KEGG: pfl:PFL_1997 hypothetical protein; hypothetical protein 1359201 5868959 PputGB1_1199 Pseudomonas putida GB-1 hypothetical protein YP_001667443.1 1358854 D 76869 CDS YP_001667444.1 167032213 5868960 1359263..1360258 1 NC_010322.1 KEGG: pst:PSPTO_3407 hypothetical protein; hypothetical protein 1360258 5868960 PputGB1_1200 Pseudomonas putida GB-1 hypothetical protein YP_001667444.1 1359263 D 76869 CDS YP_001667445.1 167032214 5868961 1360261..1360575 1 NC_010322.1 KEGG: pfl:PFL_1999 hypothetical protein; hypothetical protein 1360575 5868961 PputGB1_1201 Pseudomonas putida GB-1 hypothetical protein YP_001667445.1 1360261 D 76869 CDS YP_001667446.1 167032215 5868962 1360572..1361234 1 NC_010322.1 KEGG: pfl:PFL_2000 hypothetical protein; hypothetical protein 1361234 5868962 PputGB1_1202 Pseudomonas putida GB-1 hypothetical protein YP_001667446.1 1360572 D 76869 CDS YP_001667447.1 167032216 5868963 1361227..1361757 1 NC_010322.1 KEGG: pst:PSPTO_3404 hypothetical protein; hypothetical protein 1361757 5868963 PputGB1_1203 Pseudomonas putida GB-1 hypothetical protein YP_001667447.1 1361227 D 76869 CDS YP_001667448.1 167032217 5868964 1361754..1362335 1 NC_010322.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: pen:PSEEN4163 pyocin R2_PP, tail spike protein; phage baseplate assembly protein V 1362335 5868964 PputGB1_1204 Pseudomonas putida GB-1 phage baseplate assembly protein V YP_001667448.1 1361754 D 76869 CDS YP_001667449.1 167032218 5868965 1362378..1362659 1 NC_010322.1 hypothetical protein 1362659 5868965 PputGB1_1205 Pseudomonas putida GB-1 hypothetical protein YP_001667449.1 1362378 D 76869 CDS YP_001667450.1 167032219 5868966 1362662..1362988 1 NC_010322.1 PFAM: GPW/gp25 family protein; KEGG: pen:PSEEN4162 pyocin R2_PP, baseplate protein; GPW/gp25 family protein 1362988 5868966 PputGB1_1206 Pseudomonas putida GB-1 GPW/gp25 family protein YP_001667450.1 1362662 D 76869 CDS YP_001667451.1 167032220 5868967 1362985..1363965 1 NC_010322.1 PFAM: Baseplate J family protein; KEGG: pap:PSPA7_0762 hypothetical protein; baseplate J family protein 1363965 5868967 PputGB1_1207 Pseudomonas putida GB-1 baseplate J family protein YP_001667451.1 1362985 D 76869 CDS YP_001667452.1 167032221 5868968 1363962..1364684 1 NC_010322.1 TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: cvi:CV_0423 probable phage tail protein; phage tail protein I 1364684 5868968 PputGB1_1208 Pseudomonas putida GB-1 phage tail protein I YP_001667452.1 1363962 D 76869 CDS YP_001667453.1 167032222 5868969 1364681..1365367 1 NC_010322.1 KEGG: cvi:CV_2114 probable pyocin R2_PP, tail fiber protein; putative pyocin R2_PP, tail fiber protein 1365367 5868969 PputGB1_1209 Pseudomonas putida GB-1 putative pyocin R2_PP, tail fiber protein YP_001667453.1 1364681 D 76869 CDS YP_001667454.1 167032223 5868970 1365370..1366101 1 NC_010322.1 hypothetical protein 1366101 5868970 PputGB1_1210 Pseudomonas putida GB-1 hypothetical protein YP_001667454.1 1365370 D 76869 CDS YP_001667455.1 167032224 5868971 1366109..1366564 1 NC_010322.1 KEGG: rso:RSc1920 putative tail fiber assembly-like protein; hypothetical protein 1366564 5868971 PputGB1_1211 Pseudomonas putida GB-1 hypothetical protein YP_001667455.1 1366109 D 76869 CDS YP_001667456.1 167032225 5868972 1366657..1367823 1 NC_010322.1 PFAM: tail sheath protein; KEGG: pen:PSEEN4155 pyocin R2_PP, tail sheath protein gpFI; tail sheath protein 1367823 5868972 PputGB1_1212 Pseudomonas putida GB-1 tail sheath protein YP_001667456.1 1366657 D 76869 CDS YP_001667457.1 167032226 5868973 1367836..1368345 1 NC_010322.1 TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pen:PSEEN4154 pyocin R2_PP, tail tube protein GpFII; phage major tail tube protein 1368345 5868973 PputGB1_1213 Pseudomonas putida GB-1 phage major tail tube protein YP_001667457.1 1367836 D 76869 CDS YP_001667458.1 167032227 5868974 1368396..1368692 1 NC_010322.1 KEGG: pen:PSEEN4153 hypothetical protein; hypothetical protein 1368692 5868974 PputGB1_1214 Pseudomonas putida GB-1 hypothetical protein YP_001667458.1 1368396 D 76869 CDS YP_001667459.1 167032228 5868975 1368824..1372768 1 NC_010322.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pst:PSPTO_3393 tail tape meausure protein; TP901 family phage tail tape measure protein 1372768 5868975 PputGB1_1215 Pseudomonas putida GB-1 TP901 family phage tail tape measure protein YP_001667459.1 1368824 D 76869 CDS YP_001667460.1 167032229 5868976 1372778..1373623 1 NC_010322.1 PFAM: P2 GpU family protein; KEGG: pfl:PFL_2014 pyocin R2_PP, tail formation protein; P2 GpU family protein 1373623 5868976 PputGB1_1216 Pseudomonas putida GB-1 P2 GpU family protein YP_001667460.1 1372778 D 76869 CDS YP_001667461.1 167032230 5868977 1373598..1373804 1 NC_010322.1 PFAM: tail X family protein; KEGG: psp:PSPPH_1880 prophage PSPPH02, tail protein X; tail X family protein 1373804 5868977 PputGB1_1217 Pseudomonas putida GB-1 tail X family protein YP_001667461.1 1373598 D 76869 CDS YP_001667462.1 167032231 5868978 1373868..1374911 1 NC_010322.1 PFAM: late control D family protein; KEGG: pfl:PFL_2017 tail protein D; late control D family protein 1374911 5868978 PputGB1_1218 Pseudomonas putida GB-1 late control D family protein YP_001667462.1 1373868 D 76869 CDS YP_001667463.1 167032232 5868979 1374949..1375518 1 NC_010322.1 PFAM: glycoside hydrolase family 19; KEGG: pfl:PFL_2018 pyocin R2_PP, lytic enzyme; glycoside hydrolase 1375518 5868979 PputGB1_1219 Pseudomonas putida GB-1 glycoside hydrolase YP_001667463.1 1374949 D 76869 CDS YP_001667464.1 167032233 5868980 1375518..1376072 1 NC_010322.1 KEGG: pfl:PFL_2019 phage protein, putative; phage protein 1376072 5868980 PputGB1_1220 Pseudomonas putida GB-1 phage protein YP_001667464.1 1375518 D 76869 CDS YP_001667465.1 167032234 5868981 1376224..1377021 1 NC_010322.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: psp:PSPPH_1883 prophage PSPPH02, putative adenine modification methytransferase; D12 class N6 adenine-specific DNA methyltransferase 1377021 5868981 PputGB1_1221 Pseudomonas putida GB-1 D12 class N6 adenine-specific DNA methyltransferase YP_001667465.1 1376224 D 76869 CDS YP_001667466.1 167032235 5868982 complement(1377084..1377362) 1 NC_010322.1 KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein 1377362 5868982 PputGB1_1222 Pseudomonas putida GB-1 hypothetical protein YP_001667466.1 1377084 R 76869 CDS YP_001667467.1 167032236 5868983 1377564..1377854 1 NC_010322.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 1377854 5868983 PputGB1_1223 Pseudomonas putida GB-1 hypothetical protein YP_001667467.1 1377564 D 76869 CDS YP_001667468.1 167032237 5868985 complement(1378683..1378889) 1 NC_010322.1 KEGG: pen:PSEEN1776 hypothetical protein; hypothetical protein 1378889 5868985 PputGB1_1225 Pseudomonas putida GB-1 hypothetical protein YP_001667468.1 1378683 R 76869 CDS YP_001667469.1 167032238 5868986 1379173..1379460 1 NC_010322.1 hypothetical protein 1379460 5868986 PputGB1_1226 Pseudomonas putida GB-1 hypothetical protein YP_001667469.1 1379173 D 76869 CDS YP_001667470.1 167032239 5868987 1379466..1379780 1 NC_010322.1 hypothetical protein 1379780 5868987 PputGB1_1227 Pseudomonas putida GB-1 hypothetical protein YP_001667470.1 1379466 D 76869 CDS YP_001667471.1 167032240 5868988 1379767..1380024 1 NC_010322.1 hypothetical protein 1380024 5868988 PputGB1_1228 Pseudomonas putida GB-1 hypothetical protein YP_001667471.1 1379767 D 76869 CDS YP_001667472.1 167032241 5868989 1380985..1382043 1 NC_010322.1 KEGG: pfo:Pfl_1691 hypothetical protein; hypothetical protein 1382043 5868989 PputGB1_1229 Pseudomonas putida GB-1 hypothetical protein YP_001667472.1 1380985 D 76869 CDS YP_001667473.1 167032242 5868990 1382108..1382590 1 NC_010322.1 PFAM: CinA domain protein; KEGG: pen:PSEEN4129 hypothetical protein; CinA domain-containing protein 1382590 5868990 PputGB1_1230 Pseudomonas putida GB-1 CinA domain-containing protein YP_001667473.1 1382108 D 76869 CDS YP_001667474.1 167032243 5868991 1382694..1383761 1 NC_010322.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1383761 recA 5868991 recA Pseudomonas putida GB-1 recombinase A YP_001667474.1 1382694 D 76869 CDS YP_001667475.1 167032244 5868992 1383782..1384252 1 NC_010322.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1384252 recX 5868992 recX Pseudomonas putida GB-1 recombination regulator RecX YP_001667475.1 1383782 D 76869 CDS YP_001667476.1 167032245 5868993 complement(1384302..1385423) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4126 hypothetical protein; hypothetical protein 1385423 5868993 PputGB1_1233 Pseudomonas putida GB-1 hypothetical protein YP_001667476.1 1384302 R 76869 CDS YP_001667477.1 167032246 5868994 1385584..1385793 1 NC_010322.1 KEGG: pen:PSEEN4125 hypothetical protein; hypothetical protein 1385793 5868994 PputGB1_1234 Pseudomonas putida GB-1 hypothetical protein YP_001667477.1 1385584 D 76869 CDS YP_001667478.1 167032247 5868995 complement(1385809..1386228) 1 NC_010322.1 KEGG: pen:PSEEN4124 hypothetical protein; hypothetical protein 1386228 5868995 PputGB1_1235 Pseudomonas putida GB-1 hypothetical protein YP_001667478.1 1385809 R 76869 CDS YP_001667479.1 167032248 5868996 1386447..1387157 1 NC_010322.1 PFAM: DTW domain containing protein; KEGG: pen:PSEEN4123 hypothetical protein; DTW domain-containing protein 1387157 5868996 PputGB1_1236 Pseudomonas putida GB-1 DTW domain-containing protein YP_001667479.1 1386447 D 76869 CDS YP_001667480.1 167032249 5868997 1387337..1387987 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4122 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1387987 5868997 PputGB1_1237 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001667480.1 1387337 D 76869 CDS YP_001667481.1 167032250 5868998 1388061..1388426 1 NC_010322.1 PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase 1388426 5868998 PputGB1_1238 Pseudomonas putida GB-1 diacylglycerol kinase YP_001667481.1 1388061 D 76869 CDS YP_001667482.1 167032251 5868999 complement(1388423..1389349) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4120 transcriptional regulator, LysR family; LysR family transcriptional regulator 1389349 5868999 PputGB1_1239 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667482.1 1388423 R 76869 CDS YP_001667483.1 167032252 5869000 1389468..1390247 1 NC_010322.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4119 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 1390247 5869000 PputGB1_1240 Pseudomonas putida GB-1 oxidoreductase FAD/NAD(P)-binding subunit YP_001667483.1 1389468 D 76869 CDS YP_001667484.1 167032253 5869001 complement(1390335..1390829) 1 NC_010322.1 PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: pen:PSEEN1348 metallopeptidase, SprT family; hypothetical protein 1390829 5869001 PputGB1_1241 Pseudomonas putida GB-1 hypothetical protein YP_001667484.1 1390335 R 76869 CDS YP_001667485.1 167032254 5869002 complement(1390961..1391560) 1 NC_010322.1 PFAM: protein of unknown function DUF1282; KEGG: pen:PSEEN1349 hypothetical protein; hypothetical protein 1391560 5869002 PputGB1_1242 Pseudomonas putida GB-1 hypothetical protein YP_001667485.1 1390961 R 76869 CDS YP_001667486.1 167032255 5869003 1391823..1392647 1 NC_010322.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1392647 5869003 PputGB1_1243 Pseudomonas putida GB-1 C32 tRNA thiolase YP_001667486.1 1391823 D 76869 CDS YP_001667487.1 167032256 5869004 1392652..1393323 1 NC_010322.1 KEGG: pen:PSEEN1351 DNA-glycosylase; DNA-glycosylase 1393323 5869004 PputGB1_1244 Pseudomonas putida GB-1 DNA-glycosylase YP_001667487.1 1392652 D 76869 CDS YP_001667488.1 167032257 5869005 complement(1393364..1393759) 1 NC_010322.1 KEGG: pen:PSEEN1352 hypothetical protein; hypothetical protein 1393759 5869005 PputGB1_1245 Pseudomonas putida GB-1 hypothetical protein YP_001667488.1 1393364 R 76869 CDS YP_001667489.1 167032258 5869006 complement(1393770..1394375) 1 NC_010322.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1353 tryptophan repressor binding protein WrbA; flavoprotein WrbA 1394375 5869006 PputGB1_1246 Pseudomonas putida GB-1 flavoprotein WrbA YP_001667489.1 1393770 R 76869 CDS YP_001667490.1 167032259 5869007 complement(1394372..1394737) 1 NC_010322.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pen:PSEEN1354 arsenate reductase; arsenate reductase 1394737 5869007 PputGB1_1247 Pseudomonas putida GB-1 arsenate reductase YP_001667490.1 1394372 R 76869 CDS YP_001667491.1 167032260 5869008 1394811..1395275 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1355 thioredoxin; alkyl hydroperoxide reductase 1395275 5869008 PputGB1_1248 Pseudomonas putida GB-1 alkyl hydroperoxide reductase YP_001667491.1 1394811 D 76869 CDS YP_001667492.1 167032261 5869009 complement(1395310..1395714) 1 NC_010322.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN1356 hypothetical protein; hypothetical protein 1395714 5869009 PputGB1_1249 Pseudomonas putida GB-1 hypothetical protein YP_001667492.1 1395310 R 76869 CDS YP_001667493.1 167032262 5869010 complement(1395711..1396148) 1 NC_010322.1 KEGG: pen:PSEEN1357 hypothetical protein; hypothetical protein 1396148 5869010 PputGB1_1250 Pseudomonas putida GB-1 hypothetical protein YP_001667493.1 1395711 R 76869 CDS YP_001667494.1 167032263 5869011 complement(1396180..1397169) 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN1358 D-lactate dehydrogenase, NAD-dependent; D-isomer specific 2-hydroxyacid dehydrogenase 1397169 5869011 PputGB1_1251 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001667494.1 1396180 R 76869 CDS YP_001667495.1 167032264 5869012 complement(1397231..1399984) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pen:PSEEN1359 GacS sensor kinase protein; multi-sensor hybrid histidine kinase 1399984 5869012 PputGB1_1252 Pseudomonas putida GB-1 multi-sensor hybrid histidine kinase YP_001667495.1 1397231 R 76869 CDS YP_001667496.1 167032265 5869013 1400137..1400898 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1360 DNA-binding response regulator; two component transcriptional regulator 1400898 5869013 PputGB1_1253 Pseudomonas putida GB-1 two component transcriptional regulator YP_001667496.1 1400137 D 76869 CDS YP_001667497.1 167032266 5869014 1400902..1402275 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1361 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1402275 5869014 PputGB1_1254 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001667497.1 1400902 D 76869 CDS YP_001667498.1 167032267 5869015 1402404..1403342 1 NC_010322.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1403342 cysM 5869015 cysM Pseudomonas putida GB-1 cysteine synthase B YP_001667498.1 1402404 D 76869 CDS YP_001667499.1 167032268 5869016 1403343..1404701 1 NC_010322.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1404701 rumA 5869016 rumA Pseudomonas putida GB-1 23S rRNA 5-methyluridine methyltransferase YP_001667499.1 1403343 D 76869 CDS YP_001667500.1 167032269 5869017 1404798..1407038 1 NC_010322.1 KEGG: pen:PSEEN1364 GTP pyrophosphokinase RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1407038 5869017 PputGB1_1257 Pseudomonas putida GB-1 (p)ppGpp synthetase I SpoT/RelA YP_001667500.1 1404798 D 76869 CDS YP_001667501.1 167032270 5869018 1407101..1407934 1 NC_010322.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1407934 mazG 5869018 mazG Pseudomonas putida GB-1 nucleoside triphosphate pyrophosphohydrolase YP_001667501.1 1407101 D 76869 CDS YP_001667502.1 167032271 5869019 1407961..1408500 1 NC_010322.1 KEGG: pen:PSEEN1366 hypothetical protein; hypothetical protein 1408500 5869019 PputGB1_1259 Pseudomonas putida GB-1 hypothetical protein YP_001667502.1 1407961 D 76869 CDS YP_001667503.1 167032272 5869020 complement(1408547..1408729) 1 NC_010322.1 KEGG: pen:PSEEN1367 hypothetical protein; hypothetical protein 1408729 5869020 PputGB1_1260 Pseudomonas putida GB-1 hypothetical protein YP_001667503.1 1408547 R 76869 CDS YP_001667504.1 167032273 5869021 complement(1408929..1409639) 1 NC_010322.1 KEGG: pen:PSEEN1368 hypothetical protein; hypothetical protein 1409639 5869021 PputGB1_1261 Pseudomonas putida GB-1 hypothetical protein YP_001667504.1 1408929 R 76869 CDS YP_001667505.1 167032274 5869022 complement(1409648..1410301) 1 NC_010322.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1410301 purN 5869022 purN Pseudomonas putida GB-1 phosphoribosylglycinamide formyltransferase YP_001667505.1 1409648 R 76869 CDS YP_001667506.1 167032275 5869023 complement(1410301..1411359) 1 NC_010322.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1411359 5869023 PputGB1_1263 Pseudomonas putida GB-1 phosphoribosylaminoimidazole synthetase YP_001667506.1 1410301 R 76869 CDS YP_001667507.1 167032276 5869024 1411615..1412682 1 NC_010322.1 KEGG: pen:PSEEN1371 hypothetical protein; hypothetical protein 1412682 5869024 PputGB1_1264 Pseudomonas putida GB-1 hypothetical protein YP_001667507.1 1411615 D 76869 CDS YP_001667508.1 167032277 5869025 1412695..1413768 1 NC_010322.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN1372 permease; hypothetical protein 1413768 5869025 PputGB1_1265 Pseudomonas putida GB-1 hypothetical protein YP_001667508.1 1412695 D 76869 CDS YP_001667509.1 167032278 5869026 1413950..1414657 1 NC_010322.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1414657 5869026 PputGB1_1266 Pseudomonas putida GB-1 DNA replication initiation factor YP_001667509.1 1413950 D 76869 CDS YP_001667510.1 167032279 5869027 1414785..1415429 1 NC_010322.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN1374 hypothetical protein; NLP/P60 protein 1415429 5869027 PputGB1_1267 Pseudomonas putida GB-1 NLP/P60 protein YP_001667510.1 1414785 D 76869 CDS YP_001667511.1 167032280 5869028 1415569..1416102 1 NC_010322.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN1375 hypothetical protein; NLP/P60 protein 1416102 5869028 PputGB1_1268 Pseudomonas putida GB-1 NLP/P60 protein YP_001667511.1 1415569 D 76869 CDS YP_001667512.1 167032281 5869029 1416278..1418824 1 NC_010322.1 KEGG: pen:PSEEN1376 hypothetical protein; hypothetical protein 1418824 5869029 PputGB1_1269 Pseudomonas putida GB-1 hypothetical protein YP_001667512.1 1416278 D 76869 CDS YP_001667513.1 167032282 5869030 complement(1418836..1420200) 1 NC_010322.1 KEGG: pfo:Pfl_1639 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 1420200 5869030 PputGB1_1270 Pseudomonas putida GB-1 L-sorbosone dehydrogenase YP_001667513.1 1418836 R 76869 CDS YP_001667514.1 167032283 5869031 1420777..1421388 1 NC_010322.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1421388 5869031 PputGB1_1271 Pseudomonas putida GB-1 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001667514.1 1420777 D 76869 CDS YP_001667515.1 167032284 5869032 1421385..1422680 1 NC_010322.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1422680 5869032 PputGB1_1272 Pseudomonas putida GB-1 cobyrinic acid a,c-diamide synthase YP_001667515.1 1421385 D 76869 CDS YP_001667516.1 167032285 5869033 1422677..1423327 1 NC_010322.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pen:PSEEN1380 nitroreductase; cobalamine biosynthesis protein; cob(II)yrinic acid a,c-diamide reductase 1423327 5869033 PputGB1_1273 Pseudomonas putida GB-1 cob(II)yrinic acid a,c-diamide reductase YP_001667516.1 1422677 D 76869 CDS YP_001667517.1 167032286 5869034 1423324..1424232 1 NC_010322.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1424232 cobD 5869034 cobD Pseudomonas putida GB-1 cobalamin biosynthesis protein YP_001667517.1 1423324 D 76869 CDS YP_001667518.1 167032287 5869035 1424225..1425217 1 NC_010322.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1425217 5869035 PputGB1_1275 Pseudomonas putida GB-1 threonine-phosphate decarboxylase YP_001667518.1 1424225 D 76869 CDS YP_001667519.1 167032288 5869036 1425214..1426668 1 NC_010322.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1426668 5869036 PputGB1_1276 Pseudomonas putida GB-1 cobyric acid synthase YP_001667519.1 1425214 D 76869 CDS YP_001667520.1 167032289 5869037 1426670..1427191 1 NC_010322.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1427191 cobU 5869037 cobU Pseudomonas putida GB-1 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_001667520.1 1426670 D 76869 CDS YP_001667521.1 167032290 5869038 1427188..1428243 1 NC_010322.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1428243 cobT 5869038 cobT Pseudomonas putida GB-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001667521.1 1427188 D 76869 CDS YP_001667522.1 167032291 5869039 1428240..1428806 1 NC_010322.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN1386 alpha-ribazole-5'-phosphate phosphatase CobC; alpha-ribazole phosphatase 1428806 5869039 PputGB1_1279 Pseudomonas putida GB-1 alpha-ribazole phosphatase YP_001667522.1 1428240 D 76869 CDS YP_001667523.1 167032292 5869040 1428808..1429530 1 NC_010322.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1429530 cobS 5869040 cobS Pseudomonas putida GB-1 cobalamin synthase YP_001667523.1 1428808 D 76869 CDS YP_001667524.1 167032293 5869041 1429600..1430004 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN1389 transcriptional regulator, MarR family; MarR family transcriptional regulator 1430004 5869041 PputGB1_1281 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001667524.1 1429600 D 76869 CDS YP_001667525.1 167032294 5869042 1430069..1431271 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1390 transporter; major facilitator superfamily transporter 1431271 5869042 PputGB1_1282 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667525.1 1430069 D 76869 CDS YP_001667526.1 167032295 5869043 1431268..1431390 1 NC_010322.1 KEGG: pen:PSEEN1391 hypothetical protein; hypothetical protein 1431390 5869043 PputGB1_1283 Pseudomonas putida GB-1 hypothetical protein YP_001667526.1 1431268 D 76869 CDS YP_001667527.1 167032296 5869044 1431437..1431988 1 NC_010322.1 PFAM: glutathione peroxidase; Redoxin domain protein; KEGG: pen:PSEEN1392 glutathione peroxidase; glutathione peroxidase 1431988 5869044 PputGB1_1284 Pseudomonas putida GB-1 glutathione peroxidase YP_001667527.1 1431437 D 76869 CDS YP_001667528.1 167032297 5869045 complement(1432217..1432477) 1 NC_010322.1 KEGG: pen:PSEEN1394 hypothetical protein; hypothetical protein 1432477 5869045 PputGB1_1285 Pseudomonas putida GB-1 hypothetical protein YP_001667528.1 1432217 R 76869 CDS YP_001667529.1 167032298 5869046 1432592..1433521 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1395 transcriptional regulator, LysR family; LysR family transcriptional regulator 1433521 5869046 PputGB1_1286 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667529.1 1432592 D 76869 CDS YP_001667530.1 167032299 5869047 complement(1433564..1434829) 1 NC_010322.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pen:PSEEN1396 long-chain fatty acid transporter; aromatic hydrocarbon degradation membrane protein 1434829 5869047 PputGB1_1287 Pseudomonas putida GB-1 aromatic hydrocarbon degradation membrane protein YP_001667530.1 1433564 R 76869 CDS YP_001667531.1 167032300 5869048 complement(1434977..1435459) 1 NC_010322.1 KEGG: pen:PSEEN1397 hypothetical protein; hypothetical protein 1435459 5869048 PputGB1_1288 Pseudomonas putida GB-1 hypothetical protein YP_001667531.1 1434977 R 76869 CDS YP_001667532.1 167032301 5869049 complement(1435709..1435933) 1 NC_010322.1 KEGG: pen:PSEEN1400 hypothetical protein; hypothetical protein 1435933 5869049 PputGB1_1289 Pseudomonas putida GB-1 hypothetical protein YP_001667532.1 1435709 R 76869 CDS YP_001667533.1 167032302 5869050 1436885..1437304 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1403 hypothetical protein; Sel1 domain-containing protein 1437304 5869050 PputGB1_1290 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001667533.1 1436885 D 76869 CDS YP_001667534.1 167032303 5869051 1437396..1438883 1 NC_010322.1 PFAM: protein of unknown function DUF195; KEGG: pen:PSEEN1404 hypothetical protein; hypothetical protein 1438883 5869051 PputGB1_1291 Pseudomonas putida GB-1 hypothetical protein YP_001667534.1 1437396 D 76869 CDS YP_001667535.1 167032304 5869052 complement(1438855..1442334) 1 NC_010322.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1405 sensory box histidine kinase/response regulator hybrid; integral membrane sensor hybrid histidine kinase 1442334 5869052 PputGB1_1292 Pseudomonas putida GB-1 integral membrane sensor hybrid histidine kinase YP_001667535.1 1438855 R 76869 CDS YP_001667536.1 167032305 5869053 complement(1442460..1443638) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1406 major facilitator family transporter; major facilitator superfamily transporter 1443638 5869053 PputGB1_1293 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667536.1 1442460 R 76869 CDS YP_001667537.1 167032306 5869054 1443792..1444523 1 NC_010322.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pfo:Pfl_2799 transcriptional regulator, GntR family; GntR family transcriptional regulator 1444523 5869054 PputGB1_1294 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001667537.1 1443792 D 76869 CDS YP_001667538.1 167032307 5869055 1444615..1445889 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_2798 general substrate transporter; major facilitator superfamily transporter 1445889 5869055 PputGB1_1295 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667538.1 1444615 D 76869 CDS YP_001667539.1 167032308 5869056 1445914..1446747 1 NC_010322.1 PFAM: amidohydrolase 2; KEGG: pfo:Pfl_2797 amidohydrolase 2; amidohydrolase 2 1446747 5869056 PputGB1_1296 Pseudomonas putida GB-1 amidohydrolase 2 YP_001667539.1 1445914 D 76869 CDS YP_001667540.1 167032309 5869057 1446860..1448737 1 NC_010322.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1408 acyltransferase; phospholipid/glycerol acyltransferase 1448737 5869057 PputGB1_1297 Pseudomonas putida GB-1 phospholipid/glycerol acyltransferase YP_001667540.1 1446860 D 76869 CDS YP_001667541.1 167032310 5869058 complement(1448747..1449064) 1 NC_010322.1 PFAM: small multidrug resistance protein; KEGG: pen:PSEEN1409 multidrug efflux pump; small multidrug resistance protein 1449064 5869058 PputGB1_1298 Pseudomonas putida GB-1 small multidrug resistance protein YP_001667541.1 1448747 R 76869 CDS YP_001667542.1 167032311 5869059 complement(1449170..1450144) 1 NC_010322.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN1410 transporter; sodium/bile acid transporter family protein; bile acid:sodium symporter 1450144 5869059 PputGB1_1299 Pseudomonas putida GB-1 bile acid:sodium symporter YP_001667542.1 1449170 R 76869 CDS YP_001667543.1 167032312 5869060 complement(1450268..1451188) 1 NC_010322.1 Required for efficient pilin antigenic variation; recombination associated protein 1451188 rdgC 5869060 rdgC Pseudomonas putida GB-1 recombination associated protein YP_001667543.1 1450268 R 76869 CDS YP_001667544.1 167032313 5869065 complement(1451994..1452785) 1 NC_010322.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pen:PSEEN1415 methionine aminopeptidase, type I Map; methionine aminopeptidase 1452785 5869065 PputGB1_1301 Pseudomonas putida GB-1 methionine aminopeptidase YP_001667544.1 1451994 R 76869 CDS YP_001667545.1 167032314 5869066 1453035..1457051 1 NC_010322.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1417 assimilatory nitrate reductase; molybdopterin oxidoreductase 1457051 5869066 PputGB1_1302 Pseudomonas putida GB-1 molybdopterin oxidoreductase YP_001667545.1 1453035 D 76869 CDS YP_001667546.1 167032315 5869067 1457354..1459906 1 NC_010322.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1418 nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding; nitrite reductase (NAD(P)H) large subunit 1459906 5869067 PputGB1_1303 Pseudomonas putida GB-1 nitrite reductase (NAD(P)H) large subunit YP_001667546.1 1457354 D 76869 CDS YP_001667547.1 167032316 5869068 1459906..1460268 1 NC_010322.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: pen:PSEEN1419 nitrite reductase, small subunit NirD; nitrite reductase (NAD(P)H) small subunit 1460268 5869068 PputGB1_1304 Pseudomonas putida GB-1 nitrite reductase (NAD(P)H) small subunit YP_001667547.1 1459906 D 76869 CDS YP_001667548.1 167032317 5869069 1460309..1461241 1 NC_010322.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1425 pca operon transcriptional activator PcaQ; LysR family transcriptional regulator 1461241 5869069 PputGB1_1305 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667548.1 1460309 D 76869 CDS YP_001667549.1 167032318 5869070 1461471..1462235 1 NC_010322.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1426 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 1462235 5869070 PputGB1_1306 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001667549.1 1461471 D 76869 CDS YP_001667550.1 167032319 5869071 1462524..1462964 1 NC_010322.1 PFAM: protein of unknown function DUF1232; KEGG: pen:PSEEN1427 hypothetical protein; hypothetical protein 1462964 5869071 PputGB1_1307 Pseudomonas putida GB-1 hypothetical protein YP_001667550.1 1462524 D 76869 CDS YP_001667551.1 167032320 5869072 1463082..1463420 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1428 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1463420 5869072 PputGB1_1308 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001667551.1 1463082 D 76869 CDS YP_001667552.1 167032321 5869073 1463417..1463785 1 NC_010322.1 KEGG: pen:PSEEN1429 hypothetical protein; hypothetical protein 1463785 5869073 PputGB1_1309 Pseudomonas putida GB-1 hypothetical protein YP_001667552.1 1463417 D 76869 CDS YP_001667553.1 167032322 5869074 complement(1463815..1464735) 1 NC_010322.1 PFAM: EAL domain protein; KEGG: pen:PSEEN1430 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate phosphodiesterase 1464735 5869074 PputGB1_1310 Pseudomonas putida GB-1 diguanylate phosphodiesterase YP_001667553.1 1463815 R 76869 CDS YP_001667554.1 167032323 5869075 complement(1464854..1466935) 1 NC_010322.1 KEGG: pen:PSEEN1431 carboxy-terminal protease for penicillin-binding protein 3 Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1466935 5869075 PputGB1_1311 Pseudomonas putida GB-1 carboxyl-terminal protease YP_001667554.1 1464854 R 76869 CDS YP_001667555.1 167032324 5869076 1467076..1468038 1 NC_010322.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1432 alcohol dehydrogenase, zinc-containing; PIG3 family NAD(P)H quinone oxidoreductase 1468038 5869076 PputGB1_1312 Pseudomonas putida GB-1 PIG3 family NAD(P)H quinone oxidoreductase YP_001667555.1 1467076 D 76869 CDS YP_001667556.1 167032325 5869077 complement(1468142..1468795) 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1433 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1468795 5869077 PputGB1_1313 Pseudomonas putida GB-1 HAD family hydrolase YP_001667556.1 1468142 R 76869 CDS YP_001667557.1 167032326 5869078 complement(1468810..1469799) 1 NC_010322.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1434 ABC transporter, ATP-binding protein; ABC transporter-like protein 1469799 5869078 PputGB1_1314 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667557.1 1468810 R 76869 CDS YP_001667558.1 167032327 5869079 complement(1469801..1470595) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1435 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1470595 5869079 PputGB1_1315 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667558.1 1469801 R 76869 CDS YP_001667559.1 167032328 5869080 complement(1470585..1471424) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1436 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1471424 5869080 PputGB1_1316 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001667559.1 1470585 R 76869 CDS YP_001667560.1 167032329 5869081 complement(1471421..1472227) 1 NC_010322.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pen:PSEEN1437 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1472227 5869081 PputGB1_1317 Pseudomonas putida GB-1 type I phosphodiesterase/nucleotide pyrophosphatase YP_001667560.1 1471421 R 76869 CDS YP_001667561.1 167032330 5869082 complement(1472385..1473443) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1438 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 1473443 5869082 PputGB1_1318 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001667561.1 1472385 R 76869 CDS YP_001667562.1 167032331 5869083 1473772..1474485 1 NC_010322.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN1439 transcriptional regulator, GntR family; GntR family transcriptional regulator 1474485 5869083 PputGB1_1319 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001667562.1 1473772 D 76869 CDS YP_001667563.1 167032332 5869084 complement(1474492..1476645) 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN1440 transporter, mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 1476645 5869084 PputGB1_1320 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001667563.1 1474492 R 76869 CDS YP_001667564.1 167032333 5869085 complement(1476690..1476857) 1 NC_010322.1 KEGG: pen:PSEEN1441 hypothetical protein; hypothetical protein 1476857 5869085 PputGB1_1321 Pseudomonas putida GB-1 hypothetical protein YP_001667564.1 1476690 R 76869 CDS YP_001667565.1 167032334 5869086 complement(1476972..1478261) 1 NC_010322.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 1478261 5869086 PputGB1_1322 Pseudomonas putida GB-1 putative aminopeptidase 2 YP_001667565.1 1476972 R 76869 CDS YP_001667566.1 167032335 5869087 complement(1478369..1479004) 1 NC_010322.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN1443 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 1479004 5869087 PputGB1_1323 Pseudomonas putida GB-1 pseudouridine synthase YP_001667566.1 1478369 R 76869 CDS YP_001667567.1 167032336 5869088 complement(1479154..1479408) 1 NC_010322.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1479408 minE 5869088 minE Pseudomonas putida GB-1 cell division topological specificity factor MinE YP_001667567.1 1479154 R 76869 CDS YP_001667568.1 167032337 5869089 complement(1479412..1480224) 1 NC_010322.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN1445 septum site-determining protein MinD; septum site-determining protein MinD 1480224 5869089 PputGB1_1325 Pseudomonas putida GB-1 septum site-determining protein MinD YP_001667568.1 1479412 R 76869 CDS YP_001667569.1 167032338 5869090 complement(1480334..1481095) 1 NC_010322.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1481095 minC 5869090 minC Pseudomonas putida GB-1 septum formation inhibitor YP_001667569.1 1480334 R 76869 CDS YP_001667570.1 167032339 5869091 1481207..1482142 1 NC_010322.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1482142 5869091 PputGB1_1327 Pseudomonas putida GB-1 lipid A biosynthesis lauroyl acyltransferase YP_001667570.1 1481207 D 76869 CDS YP_001667571.1 167032340 5869092 1482169..1483317 1 NC_010322.1 PFAM: Patatin; KEGG: pen:PSEEN1448 hypothetical protein; patatin 1483317 5869092 PputGB1_1328 Pseudomonas putida GB-1 patatin YP_001667571.1 1482169 D 76869 CDS YP_001667572.1 167032341 5869093 complement(1483386..1484210) 1 NC_010322.1 PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN1449 lipoprotein VacJ-like; VacJ family lipoprotein 1484210 5869093 PputGB1_1329 Pseudomonas putida GB-1 VacJ family lipoprotein YP_001667572.1 1483386 R 76869 CDS YP_001667573.1 167032342 5869094 complement(1484203..1485501) 1 NC_010322.1 KEGG: pen:PSEEN1450 hypothetical protein; hypothetical protein 1485501 5869094 PputGB1_1330 Pseudomonas putida GB-1 hypothetical protein YP_001667573.1 1484203 R 76869 CDS YP_001667574.1 167032343 5869095 1485692..1486069 1 NC_010322.1 KEGG: pen:PSEEN1451 hypothetical protein; hypothetical protein 1486069 5869095 PputGB1_1331 Pseudomonas putida GB-1 hypothetical protein YP_001667574.1 1485692 D 76869 CDS YP_001667575.1 167032344 5869096 complement(1486191..1487759) 1 NC_010322.1 KEGG: pen:PSEEN1452 beta (1-6) glucans synthase; beta (1-6) glucans synthase 1487759 5869096 PputGB1_1332 Pseudomonas putida GB-1 beta (1-6) glucans synthase YP_001667575.1 1486191 R 76869 CDS YP_001667576.1 167032345 5869097 1487957..1488817 1 NC_010322.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1453 glycine betaine-binding protein, ABC type; substrate-binding region of ABC-type glycine betaine transport system 1488817 5869097 PputGB1_1333 Pseudomonas putida GB-1 substrate-binding region of ABC-type glycine betaine transport system YP_001667576.1 1487957 D 76869 CDS YP_001667577.1 167032346 5869098 1489060..1489371 1 NC_010322.1 PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN1454 hypothetical protein; hypothetical protein 1489371 5869098 PputGB1_1334 Pseudomonas putida GB-1 hypothetical protein YP_001667577.1 1489060 D 76869 CDS YP_001667578.1 167032347 5869099 1489368..1491032 1 NC_010322.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1491032 actP 5869099 actP Pseudomonas putida GB-1 acetate permease YP_001667578.1 1489368 D 76869 CDS YP_001667579.1 167032348 5869100 complement(1491108..1491260) 1 NC_010322.1 KEGG: pen:PSEEN1462 hypothetical protein; hypothetical protein 1491260 5869100 PputGB1_1336 Pseudomonas putida GB-1 hypothetical protein YP_001667579.1 1491108 R 76869 CDS YP_001667580.1 167032349 5869101 1491500..1492309 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1463 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1492309 5869101 PputGB1_1337 Pseudomonas putida GB-1 short chain dehydrogenase YP_001667580.1 1491500 D 76869 CDS YP_001667581.1 167032350 5869102 1492430..1492612 1 NC_010322.1 PFAM: carbon storage regulator; KEGG: pen:PSEEN1464 carbon storage regulator; carbon storage regulator CsrA 1492612 5869102 PputGB1_1338 Pseudomonas putida GB-1 carbon storage regulator CsrA YP_001667581.1 1492430 D 76869 CDS YP_001667582.1 167032351 5869103 complement(1492609..1492836) 1 NC_010322.1 PFAM: protein of unknown function UPF0270; KEGG: pen:PSEEN1465 hypothetical protein; hypothetical protein 1492836 5869103 PputGB1_1339 Pseudomonas putida GB-1 hypothetical protein YP_001667582.1 1492609 R 76869 CDS YP_001667583.1 167032352 5869104 complement(1492917..1494101) 1 NC_010322.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M20; peptidase M42 family protein; KEGG: pen:PSEEN1467 peptidase M42; peptidase M42 family hydrolase 1494101 5869104 PputGB1_1340 Pseudomonas putida GB-1 peptidase M42 family hydrolase YP_001667583.1 1492917 R 76869 CDS YP_001667584.1 167032353 5869105 complement(1494282..1496027) 1 NC_010322.1 KEGG: pen:PSEEN1468 acetyltransferase, GNAT family; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase; GNAT family acetyltransferase 1496027 5869105 PputGB1_1341 Pseudomonas putida GB-1 GNAT family acetyltransferase YP_001667584.1 1494282 R 76869 CDS YP_001667585.1 167032354 5869106 complement(1496031..1497818) 1 NC_010322.1 KEGG: pen:PSEEN1469 asparagine synthetase AsnB; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase amidotransferase 1497818 5869106 PputGB1_1342 Pseudomonas putida GB-1 asparagine synthase amidotransferase YP_001667585.1 1496031 R 76869 CDS YP_001667586.1 167032355 5869107 complement(1497962..1499926) 1 NC_010322.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1499926 mnmC 5869107 mnmC Pseudomonas putida GB-1 5-methylaminomethyl-2-thiouridine methyltransferase YP_001667586.1 1497962 R 76869 CDS YP_001667587.1 167032356 5869108 1500063..1501556 1 NC_010322.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN1471 hypothetical protein; hypothetical protein 1501556 5869108 PputGB1_1344 Pseudomonas putida GB-1 hypothetical protein YP_001667587.1 1500063 D 76869 CDS YP_001667588.1 167032357 5869109 1501750..1502712 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1473 hypothetical protein; hypothetical protein 1502712 5869109 PputGB1_1345 Pseudomonas putida GB-1 hypothetical protein YP_001667588.1 1501750 D 76869 CDS YP_001667589.1 167032358 5869110 complement(1502758..1504152) 1 NC_010322.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1504152 5869110 PputGB1_1346 Pseudomonas putida GB-1 fumarate hydratase YP_001667589.1 1502758 R 76869 CDS YP_001667590.1 167032359 5869111 1504307..1504831 1 NC_010322.1 KEGG: pen:PSEEN1475 hypothetical protein; hypothetical protein 1504831 5869111 PputGB1_1347 Pseudomonas putida GB-1 hypothetical protein YP_001667590.1 1504307 D 76869 CDS YP_001667591.1 167032360 5869112 1504842..1505138 1 NC_010322.1 PFAM: BolA family protein; KEGG: pen:PSEEN1476 transcriptional regulator, BolA superfamily; BolA family protein 1505138 5869112 PputGB1_1348 Pseudomonas putida GB-1 BolA family protein YP_001667591.1 1504842 D 76869 CDS YP_001667592.1 167032361 5869113 1505248..1506180 1 NC_010322.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN1477 hypothetical protein; hypothetical protein 1506180 5869113 PputGB1_1349 Pseudomonas putida GB-1 hypothetical protein YP_001667592.1 1505248 D 76869 CDS YP_001667593.1 167032362 5869114 1506184..1506816 1 NC_010322.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN1478 hypothetical protein; DSBA oxidoreductase 1506816 5869114 PputGB1_1350 Pseudomonas putida GB-1 DSBA oxidoreductase YP_001667593.1 1506184 D 76869 CDS YP_001667594.1 167032363 5869115 1506809..1508641 1 NC_010322.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1479 ABC transporter, ATP-binding protein; ABC transporter-like protein 1508641 5869115 PputGB1_1351 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667594.1 1506809 D 76869 CDS YP_001667595.1 167032364 5869116 1508766..1511222 1 NC_010322.1 KEGG: pen:PSEEN1480 sensory box protein/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1511222 5869116 PputGB1_1352 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001667595.1 1508766 D 76869 CDS YP_001667596.1 167032365 5869117 1511253..1512038 1 NC_010322.1 KEGG: pen:PSEEN1481 hypothetical protein; hypothetical protein 1512038 5869117 PputGB1_1353 Pseudomonas putida GB-1 hypothetical protein YP_001667596.1 1511253 D 76869 CDS YP_001667597.1 167032366 5869118 complement(1512161..1512901) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1482 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1512901 5869118 PputGB1_1354 Pseudomonas putida GB-1 short chain dehydrogenase YP_001667597.1 1512161 R 76869 CDS YP_001667598.1 167032367 5869119 complement(1512923..1513594) 1 NC_010322.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 1513594 5869119 PputGB1_1355 Pseudomonas putida GB-1 phosphoglycolate phosphatase YP_001667598.1 1512923 R 76869 CDS YP_001667599.1 167032368 5869120 complement(1513597..1514295) 1 NC_010322.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1514295 5869120 PputGB1_1356 Pseudomonas putida GB-1 3-demethylubiquinone-9 3-methyltransferase YP_001667599.1 1513597 R 76869 CDS YP_001667600.1 167032369 5869121 1514406..1515482 1 NC_010322.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1515482 mtnA 5869121 mtnA Pseudomonas putida GB-1 methylthioribose-1-phosphate isomerase YP_001667600.1 1514406 D 76869 CDS YP_001667601.1 167032370 5869122 1515769..1518534 1 NC_010322.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1518534 5869122 PputGB1_1358 Pseudomonas putida GB-1 DNA gyrase subunit A YP_001667601.1 1515769 D 76869 CDS YP_001667602.1 167032371 5869123 1518711..1519718 1 NC_010322.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1519718 5869123 PputGB1_1359 Pseudomonas putida GB-1 phosphoserine aminotransferase YP_001667602.1 1518711 D 76869 CDS YP_001667603.1 167032372 5869124 1519718..1520812 1 NC_010322.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pen:PSEEN1489 bifunctional chorismate mutase/prephenate dehydratase PheA; chorismate mutase 1520812 5869124 PputGB1_1360 Pseudomonas putida GB-1 chorismate mutase YP_001667603.1 1519718 D 76869 CDS YP_001667604.1 167032373 5869125 1520973..1523213 1 NC_010322.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1523213 5869125 PputGB1_1361 Pseudomonas putida GB-1 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase YP_001667604.1 1520973 D 76869 CDS YP_001667605.1 167032374 5869126 1523210..1523896 1 NC_010322.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1523896 cmk 5869126 cmk Pseudomonas putida GB-1 cytidylate kinase YP_001667605.1 1523210 D 76869 CDS YP_001667606.1 167032375 5869127 1524021..1525697 1 NC_010322.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1525697 rpsA 5869127 rpsA Pseudomonas putida GB-1 30S ribosomal protein S1 YP_001667606.1 1524021 D 76869 CDS YP_001667607.1 167032376 5869128 complement(1525866..1526318) 1 NC_010322.1 KEGG: pen:PSEEN3227 hypothetical protein; hypothetical protein 1526318 5869128 PputGB1_1364 Pseudomonas putida GB-1 hypothetical protein YP_001667607.1 1525866 R 76869 CDS YP_001667608.1 167032377 5869129 1526836..1527132 1 NC_010322.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1527132 ihfB 5869129 ihfB Pseudomonas putida GB-1 integration host factor subunit beta YP_001667608.1 1526836 D 76869 CDS YP_001667609.1 167032378 5869130 1527152..1527415 1 NC_010322.1 KEGG: pfo:Pfl_4059 hypothetical protein; hypothetical protein 1527415 5869130 PputGB1_1366 Pseudomonas putida GB-1 hypothetical protein YP_001667609.1 1527152 D 76869 CDS YP_001667610.1 167032379 5869131 1527518..1528951 1 NC_010322.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: psp:PSPPH_3659 metallo-beta-lactamase family, beta-CASP subfamily; beta-lactamase domain-containing protein 1528951 5869131 PputGB1_1367 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001667610.1 1527518 D 76869 CDS YP_001667611.1 167032380 5869132 1529343..1530386 1 NC_010322.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN1495 O-antigen chain length regulator protein (Wzz); lipopolysaccharide biosynthesis protein 1530386 5869132 PputGB1_1368 Pseudomonas putida GB-1 lipopolysaccharide biosynthesis protein YP_001667611.1 1529343 D 76869 CDS YP_001667612.1 167032381 5869133 1530434..1531684 1 NC_010322.1 PFAM: polysaccharide biosynthesis protein; KEGG: gka:GK3299 O-antigen transporter; polysaccharide biosynthesis protein 1531684 5869133 PputGB1_1369 Pseudomonas putida GB-1 polysaccharide biosynthesis protein YP_001667612.1 1530434 D 76869 CDS YP_001667613.1 167032382 5869134 1531732..1532733 1 NC_010322.1 KEGG: cpy:Cphy_3500 hemolytic protein HlpA-like protein; hemolytic protein HlpA-like protein 1532733 5869134 PputGB1_1370 Pseudomonas putida GB-1 hemolytic protein HlpA-like protein YP_001667613.1 1531732 D 76869 CDS YP_001667614.1 167032383 5869135 1532737..1533762 1 NC_010322.1 KEGG: fps:FP1292 hypothetical protein; hypothetical protein 1533762 5869135 PputGB1_1371 Pseudomonas putida GB-1 hypothetical protein YP_001667614.1 1532737 D 76869 CDS YP_001667615.1 167032384 5869136 1533833..1535041 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: cpy:Cphy_3501 glycosyl transferase group 1; glycosyl transferase group 1 protein 1535041 5869136 PputGB1_1372 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001667615.1 1533833 D 76869 CDS YP_001667616.1 167032385 5869137 1535034..1536068 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pen:PSEEN1500 polysaccharide biosynthesis protein; O-antigen biosynthesis protein; polysaccharide biosynthesis protein CapD 1536068 5869137 PputGB1_1373 Pseudomonas putida GB-1 polysaccharide biosynthesis protein CapD YP_001667616.1 1535034 D 76869 CDS YP_001667617.1 167032386 5869138 1536073..1537191 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1501 nucleoside-diphosphate-sugar epimerase WbjC; NAD-dependent epimerase/dehydratase 1537191 5869138 PputGB1_1374 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001667617.1 1536073 D 76869 CDS YP_001667618.1 167032387 5869139 1537214..1538344 1 NC_010322.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN1502 UDP-N-acetylglucosamine 2-epimerase Wbjd; UDP-N-acetylglucosamine 2-epimerase 1538344 5869139 PputGB1_1375 Pseudomonas putida GB-1 UDP-N-acetylglucosamine 2-epimerase YP_001667618.1 1537214 D 76869 CDS YP_001667619.1 167032388 5869140 1538359..1539609 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1503 glycosyltransferase (group 1); glycosyl transferase group 1 protein 1539609 5869140 PputGB1_1376 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001667619.1 1538359 D 76869 CDS YP_001667620.1 167032389 5869141 1539609..1540574 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1504 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 1540574 5869141 PputGB1_1377 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001667620.1 1539609 D 76869 CDS YP_001667621.1 167032390 5869142 1540571..1541581 1 NC_010322.1 PFAM: glycosyl transferase family 4; KEGG: pen:PSEEN1505 glycosyl transferase WbpL; glycosyl transferase family protein 1541581 5869142 PputGB1_1378 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001667621.1 1540571 D 76869 CDS YP_001667622.1 167032391 5869143 1541616..1543643 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1506 dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM; polysaccharide biosynthesis protein CapD 1543643 5869143 PputGB1_1379 Pseudomonas putida GB-1 polysaccharide biosynthesis protein CapD YP_001667622.1 1541616 D 76869 CDS YP_001667623.1 167032392 5869144 1543799..1544869 1 NC_010322.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1544869 5869144 PputGB1_1380 Pseudomonas putida GB-1 dTDP-glucose 4,6-dehydratase YP_001667623.1 1543799 D 76869 CDS YP_001667624.1 167032393 5869145 1544866..1545771 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nmu:Nmul_A0265 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1545771 5869145 PputGB1_1381 Pseudomonas putida GB-1 dTDP-4-dehydrorhamnose reductase YP_001667624.1 1544866 D 76869 CDS YP_001667625.1 167032394 5869146 1545768..1546649 1 NC_010322.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pap:PSPA7_5902 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1546649 5869146 PputGB1_1382 Pseudomonas putida GB-1 glucose-1-phosphate thymidylyltransferase YP_001667625.1 1545768 D 76869 CDS YP_001667626.1 167032395 5869147 complement(1547273..1548235) 1 NC_010322.1 hypothetical protein 1548235 5869147 PputGB1_1383 Pseudomonas putida GB-1 hypothetical protein YP_001667626.1 1547273 R 76869 CDS YP_001667627.1 167032396 5869148 complement(1548888..1550114) 1 NC_010322.1 KEGG: pau:PA14_23440 putative group 1 glycosyl transferase; putative group 1 glycosyl transferase 1550114 5869148 PputGB1_1384 Pseudomonas putida GB-1 putative group 1 glycosyl transferase YP_001667627.1 1548888 R 76869 CDS YP_001667628.1 167032397 5869149 complement(1550111..1551358) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: bcz:BCZK4972 glycosyl transferase, group 1; possible lipopolysaccharide O antigen biosynthesis protein; glycosyl transferase group 1 protein 1551358 5869149 PputGB1_1385 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001667628.1 1550111 R 76869 CDS YP_001667629.1 167032398 5869150 complement(1551346..1553109) 1 NC_010322.1 KEGG: pde:Pden_2408 hypothetical protein; hypothetical protein 1553109 5869150 PputGB1_1386 Pseudomonas putida GB-1 hypothetical protein YP_001667629.1 1551346 R 76869 CDS YP_001667630.1 167032399 5869151 complement(1553157..1553540) 1 NC_010322.1 hypothetical protein 1553540 5869151 PputGB1_1387 Pseudomonas putida GB-1 hypothetical protein YP_001667630.1 1553157 R 76869 CDS YP_001667631.1 167032400 5869152 complement(1553557..1555386) 1 NC_010322.1 KEGG: bcz:BCZK4968 hypothetical protein; hypothetical protein 1555386 5869152 PputGB1_1388 Pseudomonas putida GB-1 hypothetical protein YP_001667631.1 1553557 R 76869 CDS YP_001667632.1 167032401 5869153 complement(1555924..1562262) 1 NC_010322.1 PFAM: glycosyl transferase group 1; Methyltransferase type 11; Methyltransferase type 12; KEGG: bcz:BCZK4970 hypothetical and glycosyltransferase fusion protein; type 12 methyltransferase 1562262 5869153 PputGB1_1389 Pseudomonas putida GB-1 type 12 methyltransferase YP_001667632.1 1555924 R 76869 CDS YP_001667633.1 167032402 5869154 complement(1562276..1563538) 1 NC_010322.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: vha:VIBHAR_00690 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; nucleotide sugar dehydrogenase 1563538 5869154 PputGB1_1390 Pseudomonas putida GB-1 nucleotide sugar dehydrogenase YP_001667633.1 1562276 R 76869 CDS YP_001667634.1 167032403 5869155 complement(1563535..1564677) 1 NC_010322.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pau:PA14_23370 putative UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 1564677 5869155 PputGB1_1391 Pseudomonas putida GB-1 UDP-N-acetylglucosamine 2-epimerase YP_001667634.1 1563535 R 76869 CDS YP_001667635.1 167032404 5869156 1565362..1565697 1 NC_010322.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: pen:PSEEN1508 hypothetical protein; helix-hairpin-helix repeat-containing competence protein ComEA 1565697 5869156 PputGB1_1392 Pseudomonas putida GB-1 helix-hairpin-helix repeat-containing competence protein ComEA YP_001667635.1 1565362 D 76869 CDS YP_001667636.1 167032405 5869157 complement(1565946..1566113) 1 NC_010322.1 KEGG: pen:PSEEN1509 hypothetical protein; hypothetical protein 1566113 5869157 PputGB1_1393 Pseudomonas putida GB-1 hypothetical protein YP_001667636.1 1565946 R 76869 CDS YP_001667637.1 167032406 5869158 1566295..1566996 1 NC_010322.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1566996 5869158 PputGB1_1394 Pseudomonas putida GB-1 orotidine 5'-phosphate decarboxylase YP_001667637.1 1566295 D 76869 CDS YP_001667638.1 167032407 5869159 complement(1567195..1568196) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1511 zinc-containing alcohol dehydrogenase; alcohol dehydrogenase 1568196 5869159 PputGB1_1395 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001667638.1 1567195 R 76869 CDS YP_001667639.1 167032408 5869160 1568374..1569135 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1512 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1569135 5869160 PputGB1_1396 Pseudomonas putida GB-1 short chain dehydrogenase YP_001667639.1 1568374 D 76869 CDS YP_001667640.1 167032409 5869161 1569297..1571237 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1517 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1571237 5869161 PputGB1_1397 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001667640.1 1569297 D 76869 CDS YP_001667641.1 167032410 5869162 complement(1571351..1572541) 1 NC_010322.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1518 benzoate membrane transport protein (MFS superfamily); benzoate transporter 1572541 5869162 PputGB1_1398 Pseudomonas putida GB-1 benzoate transporter YP_001667641.1 1571351 R 76869 CDS YP_001667642.1 167032411 5869163 1572687..1573289 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1519 glutathione S-transferase; glutathione S-transferase domain-containing protein 1573289 5869163 PputGB1_1399 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001667642.1 1572687 D 76869 CDS YP_001667643.1 167032412 5869164 complement(1573359..1573730) 1 NC_010322.1 PFAM: glutaredoxin; KEGG: pen:PSEEN1520 hypothetical protein; glutaredoxin 1573730 5869164 PputGB1_1400 Pseudomonas putida GB-1 glutaredoxin YP_001667643.1 1573359 R 76869 CDS YP_001667644.1 167032413 5869165 complement(1573790..1574335) 1 NC_010322.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1574335 folE 5869165 folE Pseudomonas putida GB-1 GTP cyclohydrolase I YP_001667644.1 1573790 R 76869 CDS YP_001667645.1 167032414 5869166 complement(1574406..1574966) 1 NC_010322.1 PFAM: Smr protein/MutS2; KEGG: pen:PSEEN1522 hypothetical protein; Smr protein/MutS2 1574966 5869166 PputGB1_1402 Pseudomonas putida GB-1 Smr protein/MutS2 YP_001667645.1 1574406 R 76869 CDS YP_001667646.1 167032415 5869167 complement(1575072..1575392) 1 NC_010322.1 KEGG: pen:PSEEN1523 hypothetical protein; hypothetical protein 1575392 5869167 PputGB1_1403 Pseudomonas putida GB-1 hypothetical protein YP_001667646.1 1575072 R 76869 CDS YP_001667647.1 167032416 5869168 complement(1575478..1576068) 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN1524 isochorismatase; isochorismatase hydrolase 1576068 5869168 PputGB1_1404 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001667647.1 1575478 R 76869 CDS YP_001667648.1 167032417 5869169 1576248..1577156 1 NC_010322.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1577156 5869169 PputGB1_1405 Pseudomonas putida GB-1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001667648.1 1576248 D 76869 CDS YP_001667649.1 167032418 5869170 complement(1577307..1578089) 1 NC_010322.1 KEGG: pen:PSEEN1526 hypothetical protein; hypothetical protein 1578089 5869170 PputGB1_1406 Pseudomonas putida GB-1 hypothetical protein YP_001667649.1 1577307 R 76869 CDS YP_001667650.1 167032419 5869171 complement(1578155..1579117) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1527 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 1579117 5869171 PputGB1_1407 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001667650.1 1578155 R 76869 CDS YP_001667651.1 167032420 5869172 1579248..1580339 1 NC_010322.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1580339 5869172 PputGB1_1408 Pseudomonas putida GB-1 chorismate synthase YP_001667651.1 1579248 D 76869 CDS YP_001667652.1 167032421 5869173 1580414..1581568 1 NC_010322.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1530 transporter, MFS family; major facilitator superfamily transporter 1581568 5869173 PputGB1_1409 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667652.1 1580414 D 76869 CDS YP_001667653.1 167032422 5869174 1581568..1582104 1 NC_010322.1 KEGG: pen:PSEEN1531 oxidase; oxidase 1582104 5869174 PputGB1_1410 Pseudomonas putida GB-1 oxidase YP_001667653.1 1581568 D 76869 CDS YP_001667654.1 167032423 5869175 complement(1582166..1582438) 1 NC_010322.1 KEGG: pen:PSEEN1532 hypothetical protein; hypothetical protein 1582438 5869175 PputGB1_1411 Pseudomonas putida GB-1 hypothetical protein YP_001667654.1 1582166 R 76869 CDS YP_001667655.1 167032424 5869176 1582705..1583229 1 NC_010322.1 PFAM: Ankyrin; KEGG: pen:PSEEN1535 hypothetical protein; ankyrin 1583229 5869176 PputGB1_1412 Pseudomonas putida GB-1 ankyrin YP_001667655.1 1582705 D 76869 CDS YP_001667656.1 167032425 5869177 1583290..1583820 1 NC_010322.1 KEGG: pen:PSEEN1536 hypothetical protein; hypothetical protein 1583820 5869177 PputGB1_1413 Pseudomonas putida GB-1 hypothetical protein YP_001667656.1 1583290 D 76869 CDS YP_001667657.1 167032426 5869178 complement(1583970..1584908) 1 NC_010322.1 PFAM: zinc/iron permease; KEGG: pen:PSEEN1537 divalent heavy-metal cations transporter (ZIP family); zinc/iron permease 1584908 5869178 PputGB1_1414 Pseudomonas putida GB-1 zinc/iron permease YP_001667657.1 1583970 R 76869 CDS YP_001667658.1 167032427 5869179 1585035..1585226 1 NC_010322.1 KEGG: pen:PSEEN1538 hypothetical protein; hypothetical protein 1585226 5869179 PputGB1_1415 Pseudomonas putida GB-1 hypothetical protein YP_001667658.1 1585035 D 76869 CDS YP_001667659.1 167032428 5869180 1585392..1587449 1 NC_010322.1 PFAM: sulfatase; KEGG: pen:PSEEN1540 membrane sulfatase; sulfatase 1587449 5869180 PputGB1_1416 Pseudomonas putida GB-1 sulfatase YP_001667659.1 1585392 D 76869 CDS YP_001667660.1 167032429 5869181 1587574..1587810 1 NC_010322.1 KEGG: pen:PSEEN1541 hypothetical protein; hypothetical protein 1587810 5869181 PputGB1_1417 Pseudomonas putida GB-1 hypothetical protein YP_001667660.1 1587574 D 76869 CDS YP_001667661.1 167032430 5869182 1587987..1588319 1 NC_010322.1 PFAM: protein of unknown function DUF1260; KEGG: pen:PSEEN1542 hypothetical protein; hypothetical protein 1588319 5869182 PputGB1_1418 Pseudomonas putida GB-1 hypothetical protein YP_001667661.1 1587987 D 76869 CDS YP_001667662.1 167032431 5869183 complement(1588374..1589174) 1 NC_010322.1 KEGG: pen:PSEEN1543 cytochrome c; cytochrome c 1589174 5869183 PputGB1_1419 Pseudomonas putida GB-1 cytochrome c YP_001667662.1 1588374 R 76869 CDS YP_001667663.1 167032432 5869184 1589703..1590434 1 NC_010322.1 PFAM: glutamine amidotransferase class-I; KEGG: pen:PSEEN1544 glutamine amidotransferase, class I; amidotransferase 1590434 5869184 PputGB1_1420 Pseudomonas putida GB-1 amidotransferase YP_001667663.1 1589703 D 76869 CDS YP_001667664.1 167032433 5869185 complement(1590468..1591439) 1 NC_010322.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1545 magnesium/cobalt transporter, MIT family; magnesium and cobalt transport protein CorA 1591439 5869185 PputGB1_1421 Pseudomonas putida GB-1 magnesium and cobalt transport protein CorA YP_001667664.1 1590468 R 76869 CDS YP_001667665.1 167032434 5869186 complement(1591508..1592221) 1 NC_010322.1 KEGG: pen:PSEEN1546 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1592221 5869186 PputGB1_1422 Pseudomonas putida GB-1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001667665.1 1591508 R 76869 CDS YP_001667666.1 167032435 5869187 complement(1592333..1593022) 1 NC_010322.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1593022 5869187 PputGB1_1423 Pseudomonas putida GB-1 enoyl-CoA hydratase YP_001667666.1 1592333 R 76869 CDS YP_001667667.1 167032436 5869189 complement(1593459..1595591) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1548 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor 1595591 5869189 PputGB1_1424 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667667.1 1593459 R 76869 CDS YP_001667668.1 167032437 5869190 complement(1595668..1596048) 1 NC_010322.1 KEGG: pen:PSEEN1549 hypothetical protein; hypothetical protein 1596048 5869190 PputGB1_1425 Pseudomonas putida GB-1 hypothetical protein YP_001667668.1 1595668 R 76869 CDS YP_001667669.1 167032438 5869191 complement(1596173..1597360) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1555 transport protein (MFS superfamily); major facilitator superfamily transporter 1597360 5869191 PputGB1_1426 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667669.1 1596173 R 76869 CDS YP_001667670.1 167032439 5869192 1597466..1598350 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1556 transcriptional regulator, LysR family; LysR family transcriptional regulator 1598350 5869192 PputGB1_1427 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667670.1 1597466 D 76869 CDS YP_001667671.1 167032440 5869193 complement(1598391..1599140) 1 NC_010322.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1599140 fabG 5869193 fabG Pseudomonas putida GB-1 3-ketoacyl-ACP reductase YP_001667671.1 1598391 R 76869 CDS YP_001667672.1 167032441 5869194 1599259..1600197 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1558 transcriptional regulator, LysR family; LysR family transcriptional regulator 1600197 5869194 PputGB1_1429 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667672.1 1599259 D 76869 CDS YP_001667673.1 167032442 5869195 complement(1600269..1600739) 1 NC_010322.1 KEGG: pen:PSEEN1559 hypothetical protein; GreA/GreB family elongation factor 1600739 5869195 PputGB1_1430 Pseudomonas putida GB-1 GreA/GreB family elongation factor YP_001667673.1 1600269 R 76869 CDS YP_001667674.1 167032443 5869196 complement(1600742..1601140) 1 NC_010322.1 KEGG: pen:PSEEN1560 hypothetical protein; hypothetical protein 1601140 5869196 PputGB1_1431 Pseudomonas putida GB-1 hypothetical protein YP_001667674.1 1600742 R 76869 CDS YP_001667675.1 167032444 5869197 1601270..1602403 1 NC_010322.1 KEGG: pen:PSEEN1561 hypothetical protein; hypothetical protein 1602403 5869197 PputGB1_1432 Pseudomonas putida GB-1 hypothetical protein YP_001667675.1 1601270 D 76869 CDS YP_001667676.1 167032445 5869198 1602452..1603021 1 NC_010322.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1603021 5869198 PputGB1_1433 Pseudomonas putida GB-1 elongation factor P YP_001667676.1 1602452 D 76869 CDS YP_001667677.1 167032446 5869199 complement(1603079..1603507) 1 NC_010322.1 PFAM: OsmC family protein; KEGG: pen:PSEEN1563 organic hydroperoxide resistance protein; OsmC family protein 1603507 5869199 PputGB1_1434 Pseudomonas putida GB-1 OsmC family protein YP_001667677.1 1603079 R 76869 CDS YP_001667678.1 167032447 5869200 complement(1603648..1604103) 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN1564 transcriptional regulator (MarR family); MarR family transcriptional regulator 1604103 5869200 PputGB1_1435 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001667678.1 1603648 R 76869 CDS YP_001667679.1 167032448 5869201 complement(1604162..1605115) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1565 transcriptional regulator, LysR family; LysR family transcriptional regulator 1605115 5869201 PputGB1_1436 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667679.1 1604162 R 76869 CDS YP_001667680.1 167032449 5869202 1605193..1605978 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1566 hypothetical protein; hypothetical protein 1605978 5869202 PputGB1_1437 Pseudomonas putida GB-1 hypothetical protein YP_001667680.1 1605193 D 76869 CDS YP_001667681.1 167032450 5869203 complement(1606010..1606861) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1567 transcriptional regulator, LysR family; LysR family transcriptional regulator 1606861 5869203 PputGB1_1438 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667681.1 1606010 R 76869 CDS YP_001667682.1 167032451 5869204 1606959..1607177 1 NC_010322.1 PFAM: protein of unknown function DUF1127; KEGG: pen:PSEEN1568 hypothetical protein; hypothetical protein 1607177 5869204 PputGB1_1439 Pseudomonas putida GB-1 hypothetical protein YP_001667682.1 1606959 D 76869 CDS YP_001667683.1 167032452 5869205 1607261..1608478 1 NC_010322.1 PFAM: protein of unknown function DUF1006; KEGG: pen:PSEEN1569 hypothetical protein; hypothetical protein 1608478 5869205 PputGB1_1440 Pseudomonas putida GB-1 hypothetical protein YP_001667683.1 1607261 D 76869 CDS YP_001667684.1 167032453 5869206 complement(1608459..1609805) 1 NC_010322.1 KEGG: pen:PSEEN1570 phospho-2-dehydro-3-deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 1609805 5869206 PputGB1_1441 Pseudomonas putida GB-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001667684.1 1608459 R 76869 CDS YP_001667685.1 167032454 5869207 1609922..1610677 1 NC_010322.1 KEGG: pen:PSEEN1571 hypothetical protein; hypothetical protein 1610677 5869207 PputGB1_1442 Pseudomonas putida GB-1 hypothetical protein YP_001667685.1 1609922 D 76869 CDS YP_001667686.1 167032455 5869208 1611143..1612825 1 NC_010322.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1572 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1612825 5869208 PputGB1_1443 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001667686.1 1611143 D 76869 CDS YP_001667687.1 167032456 5869209 complement(1612911..1613678) 1 NC_010322.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN1580 aromatic ring-opening dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 1613678 5869209 PputGB1_1444 Pseudomonas putida GB-1 extradiol ring-cleavage dioxygenase class III protein subunit B YP_001667687.1 1612911 R 76869 CDS YP_001667688.1 167032457 5869210 1613780..1614430 1 NC_010322.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1614430 5869210 PputGB1_1445 Pseudomonas putida GB-1 thiopurine S-methyltransferase YP_001667688.1 1613780 D 76869 CDS YP_001667689.1 167032458 5869211 complement(1614485..1615372) 1 NC_010322.1 putative metalloprotease; heat shock protein HtpX 1615372 5869211 PputGB1_1446 Pseudomonas putida GB-1 heat shock protein HtpX YP_001667689.1 1614485 R 76869 CDS YP_001667690.1 167032459 5869212 complement(1615601..1616812) 1 NC_010322.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 1616812 5869212 PputGB1_1447 Pseudomonas putida GB-1 aminotransferase AlaT YP_001667690.1 1615601 R 76869 CDS YP_001667691.1 167032460 5869213 1616980..1617375 1 NC_010322.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1617375 5869213 PputGB1_1448 Pseudomonas putida GB-1 methionine sulfoxide reductase B YP_001667691.1 1616980 D 76869 CDS YP_001667692.1 167032461 5869214 1617389..1617877 1 NC_010322.1 PFAM: glutathione peroxidase; KEGG: pen:PSEEN1585 glutathione peroxidase; glutathione peroxidase 1617877 5869214 PputGB1_1449 Pseudomonas putida GB-1 glutathione peroxidase YP_001667692.1 1617389 D 76869 CDS YP_001667693.1 167032462 5869215 complement(1617867..1620224) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1586 sensor histidine kinase/response regulator hybrid; histidine kinase 1620224 5869215 PputGB1_1450 Pseudomonas putida GB-1 histidine kinase YP_001667693.1 1617867 R 76869 CDS YP_001667694.1 167032463 5869216 1620301..1621188 1 NC_010322.1 PFAM: protein of unknown function DUF815; KEGG: pen:PSEEN1587 hypothetical protein; hypothetical protein 1621188 5869216 PputGB1_1451 Pseudomonas putida GB-1 hypothetical protein YP_001667694.1 1620301 D 76869 CDS YP_001667695.1 167032464 5869217 1621189..1621671 1 NC_010322.1 KEGG: pen:PSEEN1588 hypothetical protein; hypothetical protein 1621671 5869217 PputGB1_1452 Pseudomonas putida GB-1 hypothetical protein YP_001667695.1 1621189 D 76869 CDS YP_001667696.1 167032465 5869218 complement(1621830..1622597) 1 NC_010322.1 KEGG: pen:PSEEN1589 hypothetical protein; hypothetical protein 1622597 5869218 PputGB1_1453 Pseudomonas putida GB-1 hypothetical protein YP_001667696.1 1621830 R 76869 CDS YP_001667697.1 167032466 5869224 complement(1623599..1624681) 1 NC_010322.1 PFAM: Fimbrial protein; KEGG: pst:PSPTO_2227 fimbrial protein, putative; fimbrial protein 1624681 5869224 PputGB1_1454 Pseudomonas putida GB-1 fimbrial protein YP_001667697.1 1623599 R 76869 CDS YP_001667698.1 167032467 5869225 complement(1624678..1627203) 1 NC_010322.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pst:PSPTO_2228 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein 1627203 5869225 PputGB1_1455 Pseudomonas putida GB-1 fimbrial biogenesis outer membrane usher protein YP_001667698.1 1624678 R 76869 CDS YP_001667699.1 167032468 5869226 complement(1627462..1632531) 1 NC_010322.1 TIGRFAM: YD repeat protein; KEGG: psb:Psyr_2040 YD repeat; YD repeat-containing protein 1632531 5869226 PputGB1_1456 Pseudomonas putida GB-1 YD repeat-containing protein YP_001667699.1 1627462 R 76869 CDS YP_001667700.1 167032469 5869227 complement(1632528..1633763) 1 NC_010322.1 hypothetical protein 1633763 5869227 PputGB1_1457 Pseudomonas putida GB-1 hypothetical protein YP_001667700.1 1632528 R 76869 CDS YP_001667701.1 167032470 5869229 1635954..1638941 1 NC_010322.1 KEGG: psb:Psyr_2042 hypothetical protein; hypothetical protein 1638941 5869229 PputGB1_1460 Pseudomonas putida GB-1 hypothetical protein YP_001667701.1 1635954 D 76869 CDS YP_001667702.1 167032471 5869230 1638966..1642904 1 NC_010322.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2044 YD repeat; YD repeat-containing protein 1642904 5869230 PputGB1_1461 Pseudomonas putida GB-1 YD repeat-containing protein YP_001667702.1 1638966 D 76869 CDS YP_001667703.1 167032472 5869231 1643342..1645120 1 NC_010322.1 KEGG: psb:Psyr_2033 hypothetical protein; hypothetical protein 1645120 5869231 PputGB1_1462 Pseudomonas putida GB-1 hypothetical protein YP_001667703.1 1643342 D 76869 CDS YP_001667704.1 167032473 5869232 1645268..1647469 1 NC_010322.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: psb:Psyr_2034 outer membrane autotransporter barrel; outer membrane autotransporter 1647469 5869232 PputGB1_1463 Pseudomonas putida GB-1 outer membrane autotransporter YP_001667704.1 1645268 D 76869 CDS YP_001667705.1 167032474 5869233 1647519..1648982 1 NC_010322.1 KEGG: psb:Psyr_2035 hypothetical protein; hypothetical protein 1648982 5869233 PputGB1_1464 Pseudomonas putida GB-1 hypothetical protein YP_001667705.1 1647519 D 76869 CDS YP_001667706.1 167032475 5869234 complement(1648992..1649726) 1 NC_010322.1 PFAM: pili assembly chaperone; KEGG: pst:PSPTO_2229 chaperone protein PapD; pili assembly chaperone 1649726 5869234 PputGB1_1465 Pseudomonas putida GB-1 pili assembly chaperone YP_001667706.1 1648992 R 76869 CDS YP_001667707.1 167032476 5869235 complement(1649786..1650262) 1 NC_010322.1 PFAM: Fimbrial protein; KEGG: pst:PSPTO_2230 type I pilus biogensis protein FimA; fimbrial protein 1650262 5869235 PputGB1_1466 Pseudomonas putida GB-1 fimbrial protein YP_001667707.1 1649786 R 76869 CDS YP_001667708.1 167032477 5869236 complement(1650481..1650891) 1 NC_010322.1 KEGG: pen:PSEEN1593 hypothetical protein; hypothetical protein 1650891 5869236 PputGB1_1467 Pseudomonas putida GB-1 hypothetical protein YP_001667708.1 1650481 R 76869 CDS YP_001667709.1 167032478 5869237 complement(1650971..1653418) 1 NC_010322.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 1653418 fadE 5869237 fadE Pseudomonas putida GB-1 acyl-CoA dehydrogenase YP_001667709.1 1650971 R 76869 CDS YP_001667710.1 167032479 5869238 1653621..1654244 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1595 glutathione S-transferase; glutathione S-transferase domain-containing protein 1654244 5869238 PputGB1_1469 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001667710.1 1653621 D 76869 CDS YP_001667711.1 167032480 5869239 1654378..1655310 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1596 ABC transporter, ATP-binding protein; ABC transporter-like protein 1655310 5869239 PputGB1_1470 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667711.1 1654378 D 76869 CDS YP_001667712.1 167032481 5869240 1655307..1656086 1 NC_010322.1 PFAM: ABC-2 type transporter; KEGG: pen:PSEEN1597 ABC transporter, permease protein; ABC transporter 1656086 5869240 PputGB1_1471 Pseudomonas putida GB-1 ABC transporter YP_001667712.1 1655307 D 76869 CDS YP_001667713.1 167032482 5869241 complement(1655970..1656608) 1 NC_010322.1 KEGG: pen:PSEEN1598 hypothetical protein; hypothetical protein 1656608 5869241 PputGB1_1472 Pseudomonas putida GB-1 hypothetical protein YP_001667713.1 1655970 R 76869 CDS YP_001667714.1 167032483 5869242 1656751..1658967 1 NC_010322.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pfo:Pfl_4178 DNA internalization-like competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1658967 5869242 PputGB1_1473 Pseudomonas putida GB-1 DNA internalization-related competence protein ComEC/Rec2 YP_001667714.1 1656751 D 76869 CDS YP_001667715.1 167032484 5869243 1658997..1659671 1 NC_010322.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN1601 transporter, MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1659671 5869243 PputGB1_1474 Pseudomonas putida GB-1 MotA/TolQ/ExbB proton channel YP_001667715.1 1658997 D 76869 CDS YP_001667716.1 167032485 5869244 1659668..1660102 1 NC_010322.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN1602 biopolymer transport protein ExbD/TolR family; biopolymer transport protein ExbD/TolR 1660102 5869244 PputGB1_1475 Pseudomonas putida GB-1 biopolymer transport protein ExbD/TolR YP_001667716.1 1659668 D 76869 CDS YP_001667717.1 167032486 5869245 1660102..1661103 1 NC_010322.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1661103 lpxK 5869245 lpxK Pseudomonas putida GB-1 tetraacyldisaccharide 4'-kinase YP_001667717.1 1660102 D 76869 CDS YP_001667718.1 167032487 5869246 1661148..1661333 1 NC_010322.1 PFAM: protein of unknown function DUF343; KEGG: pen:PSEEN1604 hypothetical protein; hypothetical protein 1661333 5869246 PputGB1_1477 Pseudomonas putida GB-1 hypothetical protein YP_001667718.1 1661148 D 76869 CDS YP_001667719.1 167032488 5869247 1661330..1662094 1 NC_010322.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1662094 5869247 PputGB1_1478 Pseudomonas putida GB-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_001667719.1 1661330 D 76869 CDS YP_001667720.1 167032489 5869248 1662094..1662558 1 NC_010322.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN1606 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1662558 5869248 PputGB1_1479 Pseudomonas putida GB-1 protein tyrosine phosphatase YP_001667720.1 1662094 D 76869 CDS YP_001667721.1 167032490 5869249 1662555..1663574 1 NC_010322.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1663574 murB 5869249 murB Pseudomonas putida GB-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001667721.1 1662555 D 76869 CDS YP_001667722.1 167032491 5869250 complement(1663680..1666940) 1 NC_010322.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1608 ribonuclease E Rne; ribonuclease 1666940 5869250 PputGB1_1481 Pseudomonas putida GB-1 ribonuclease YP_001667722.1 1663680 R 76869 CDS YP_001667723.1 167032492 5869251 1667692..1668693 1 NC_010322.1 KEGG: pen:PSEEN1609 23S rRNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1668693 5869251 PputGB1_1482 Pseudomonas putida GB-1 RluA family pseudouridine synthase YP_001667723.1 1667692 D 76869 CDS YP_001667724.1 167032493 5869252 1668697..1669371 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1610 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1669371 5869252 PputGB1_1483 Pseudomonas putida GB-1 HAD family hydrolase YP_001667724.1 1668697 D 76869 CDS YP_001667725.1 167032494 5869253 1669378..1670367 1 NC_010322.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pen:PSEEN1611 peptidase SppA; signal peptide peptidase SppA, 36K type 1670367 5869253 PputGB1_1484 Pseudomonas putida GB-1 signal peptide peptidase SppA, 36K type YP_001667725.1 1669378 D 76869 CDS YP_001667726.1 167032495 5869254 complement(1670412..1670990) 1 NC_010322.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1670990 5869254 PputGB1_1485 Pseudomonas putida GB-1 Maf-like protein YP_001667726.1 1670412 R 76869 CDS YP_001667727.1 167032496 5869255 1671087..1671614 1 NC_010322.1 PFAM: protein of unknown function DUF177; KEGG: pen:PSEEN1614 hypothetical protein; hypothetical protein 1671614 5869255 PputGB1_1486 Pseudomonas putida GB-1 hypothetical protein YP_001667727.1 1671087 D 76869 CDS YP_001667728.1 167032497 5869256 1671628..1671810 1 NC_010322.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1671810 rpmF 5869256 rpmF Pseudomonas putida GB-1 50S ribosomal protein L32 YP_001667728.1 1671628 D 76869 CDS YP_001667729.1 167032498 5869257 1671814..1672824 1 NC_010322.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1672824 5869257 PputGB1_1488 Pseudomonas putida GB-1 putative glycerol-3-phosphate acyltransferase PlsX YP_001667729.1 1671814 D 76869 CDS YP_001667730.1 167032499 5869258 1672952..1673890 1 NC_010322.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pen:PSEEN1617 malonyl-CoA-[acyl-carrier-protein] transacylase; malonyl CoA-acyl carrier protein transacylase 1673890 5869258 PputGB1_1489 Pseudomonas putida GB-1 malonyl CoA-acyl carrier protein transacylase YP_001667730.1 1672952 D 76869 CDS YP_001667731.1 167032500 5869259 1673906..1674646 1 NC_010322.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1674646 fabG 5869259 fabG Pseudomonas putida GB-1 3-ketoacyl-ACP reductase YP_001667731.1 1673906 D 76869 CDS YP_001667732.1 167032501 5869260 1674850..1675086 1 NC_010322.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1675086 acpP 5869260 acpP Pseudomonas putida GB-1 acyl carrier protein YP_001667732.1 1674850 D 76869 CDS YP_001667733.1 167032502 5869261 1675276..1676520 1 NC_010322.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1676520 5869261 PputGB1_1492 Pseudomonas putida GB-1 3-oxoacyl-(acyl carrier protein) synthase II YP_001667733.1 1675276 D 76869 CDS YP_001667734.1 167032503 5869262 1676520..1677335 1 NC_010322.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1677335 5869262 PputGB1_1493 Pseudomonas putida GB-1 4-amino-4-deoxychorismate lyase YP_001667734.1 1676520 D 76869 CDS YP_001667735.1 167032504 5869263 1677340..1678542 1 NC_010322.1 PFAM: aminodeoxychorismate lyase; KEGG: pen:PSEEN1623 hypothetical protein; aminodeoxychorismate lyase 1678542 5869263 PputGB1_1494 Pseudomonas putida GB-1 aminodeoxychorismate lyase YP_001667735.1 1677340 D 76869 CDS YP_001667736.1 167032505 5869264 1678552..1679184 1 NC_010322.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1679184 tmk 5869264 tmk Pseudomonas putida GB-1 thymidylate kinase YP_001667736.1 1678552 D 76869 CDS YP_001667737.1 167032506 5869265 1679177..1680163 1 NC_010322.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1680163 5869265 PputGB1_1496 Pseudomonas putida GB-1 DNA polymerase III subunit delta' YP_001667737.1 1679177 D 76869 CDS YP_001667738.1 167032507 5869266 1680194..1680976 1 NC_010322.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1627 deoxyribonuclease, TatD family; TatD family hydrolase 1680976 5869266 PputGB1_1497 Pseudomonas putida GB-1 TatD family hydrolase YP_001667738.1 1680194 D 76869 CDS YP_001667739.1 167032508 5869267 1681633..1681884 1 NC_010322.1 hypothetical protein 1681884 5869267 PputGB1_1498 Pseudomonas putida GB-1 hypothetical protein YP_001667739.1 1681633 D 76869 CDS YP_001667740.1 167032509 5869268 1682130..1682765 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1629 transcriptional regulator, TetR family; TetR family transcriptional regulator 1682765 5869268 PputGB1_1499 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001667740.1 1682130 D 76869 CDS YP_001667741.1 167032510 5869269 1682876..1683844 1 NC_010322.1 PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN1630 molybdenum cofactor biosynthesis protein A; molybdenum cofactor synthesis domain-containing protein 1683844 5869269 PputGB1_1500 Pseudomonas putida GB-1 molybdenum cofactor synthesis domain-containing protein YP_001667741.1 1682876 D 76869 CDS YP_001667742.1 167032511 5869270 1683911..1684516 1 NC_010322.1 KEGG: pen:PSEEN1631 lipoprotein; lipoprotein 1684516 5869270 PputGB1_1501 Pseudomonas putida GB-1 lipoprotein YP_001667742.1 1683911 D 76869 CDS YP_001667743.1 167032512 5869271 1684527..1685087 1 NC_010322.1 PFAM: protein of unknown function DUF1285; KEGG: pen:PSEEN1632 hypothetical protein; hypothetical protein 1685087 5869271 PputGB1_1502 Pseudomonas putida GB-1 hypothetical protein YP_001667743.1 1684527 D 76869 CDS YP_001667744.1 167032513 5869272 1685223..1685624 1 NC_010322.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN1633 hypothetical protein; cupin 1685624 5869272 PputGB1_1503 Pseudomonas putida GB-1 cupin YP_001667744.1 1685223 D 76869 CDS YP_001667745.1 167032514 5869274 complement(1685821..1687017) 1 NC_010322.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1687017 5869274 PputGB1_1504 Pseudomonas putida GB-1 aromatic amino acid aminotransferase YP_001667745.1 1685821 R 76869 CDS YP_001667746.1 167032515 5869275 1687305..1689320 1 NC_010322.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1689320 5869275 PputGB1_1505 Pseudomonas putida GB-1 excinuclease ABC subunit B YP_001667746.1 1687305 D 76869 CDS YP_001667747.1 167032516 5869276 complement(1689392..1690942) 1 NC_010322.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1637 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 1690942 5869276 PputGB1_1506 Pseudomonas putida GB-1 EmrB/QacA family drug resistance transporter YP_001667747.1 1689392 R 76869 CDS YP_001667748.1 167032517 5869277 complement(1690932..1691987) 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1638 HlyD family secretion protein; secretion protein HlyD family protein 1691987 5869277 PputGB1_1507 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001667748.1 1690932 R 76869 CDS YP_001667749.1 167032518 5869278 1692131..1693612 1 NC_010322.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1693612 gltX 5869278 gltX Pseudomonas putida GB-1 glutamyl-tRNA synthetase YP_001667749.1 1692131 D 76869 CDS YP_001667750.1 167032519 5869285 1694794..1695333 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1643 transcriptional regulator, TetR family; TetR family transcriptional regulator 1695333 5869285 PputGB1_1509 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001667750.1 1694794 D 76869 CDS YP_001667751.1 167032520 5869286 1695349..1696182 1 NC_010322.1 KEGG: pen:PSEEN1644 hydrolase; hydrolase 1696182 5869286 PputGB1_1510 Pseudomonas putida GB-1 hydrolase YP_001667751.1 1695349 D 76869 CDS YP_001667752.1 167032521 5869287 1696291..1696725 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN1645 hypothetical protein; thioesterase superfamily protein 1696725 5869287 PputGB1_1511 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001667752.1 1696291 D 76869 CDS YP_001667753.1 167032522 5869288 1696777..1697748 1 NC_010322.1 PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN1646 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1697748 5869288 PputGB1_1512 Pseudomonas putida GB-1 dihydrouridine synthase DuS YP_001667753.1 1696777 D 76869 CDS YP_001667754.1 167032523 5869289 1697921..1698364 1 NC_010322.1 PFAM: heat shock protein Hsp20; KEGG: pen:PSEEN1647 small heat-shock protein IbpA; heat shock protein Hsp20 1698364 5869289 PputGB1_1513 Pseudomonas putida GB-1 heat shock protein Hsp20 YP_001667754.1 1697921 D 76869 CDS YP_001667755.1 167032524 5869290 complement(1698422..1701718) 1 NC_010322.1 KEGG: pen:PSEEN1648 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1701718 5869290 PputGB1_1514 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001667755.1 1698422 R 76869 CDS YP_001667756.1 167032525 5869291 complement(1701781..1702659) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1649 transcriptional regulator, LysR family; LysR family transcriptional regulator 1702659 5869291 PputGB1_1515 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667756.1 1701781 R 76869 CDS YP_001667757.1 167032526 5869292 1702791..1704224 1 NC_010322.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1704224 5869292 PputGB1_1516 Pseudomonas putida GB-1 isopropylmalate isomerase large subunit YP_001667757.1 1702791 D 76869 CDS YP_001667758.1 167032527 5869293 1704221..1704865 1 NC_010322.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1704865 leuD 5869293 leuD Pseudomonas putida GB-1 isopropylmalate isomerase small subunit YP_001667758.1 1704221 D 76869 CDS YP_001667759.1 167032528 5869294 1704956..1705720 1 NC_010322.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_1891 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1705720 5869294 PputGB1_1518 Pseudomonas putida GB-1 type 11 methyltransferase YP_001667759.1 1704956 D 76869 CDS YP_001667760.1 167032529 5869295 1705775..1706857 1 NC_010322.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1706857 5869295 PputGB1_1519 Pseudomonas putida GB-1 3-isopropylmalate dehydrogenase YP_001667760.1 1705775 D 76869 CDS YP_001667761.1 167032530 5869296 1706921..1708033 1 NC_010322.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1708033 5869296 PputGB1_1520 Pseudomonas putida GB-1 aspartate-semialdehyde dehydrogenase YP_001667761.1 1706921 D 76869 CDS YP_001667762.1 167032531 5869297 1708244..1708735 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_1717 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1708735 5869297 PputGB1_1521 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667762.1 1708244 D 76869 CDS YP_001667763.1 167032532 5869298 1708850..1709794 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN4767 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 1709794 5869298 PputGB1_1522 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667763.1 1708850 D 76869 CDS YP_001667764.1 167032533 5869299 1709904..1713041 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_4301 TonB-dependent receptor; TonB-dependent receptor 1713041 5869299 PputGB1_1523 Pseudomonas putida GB-1 TonB-dependent receptor YP_001667764.1 1709904 D 76869 CDS YP_001667765.1 167032534 5869300 1713117..1713887 1 NC_010322.1 KEGG: plu:plu3515 hypothetical protein; hypothetical protein 1713887 5869300 PputGB1_1524 Pseudomonas putida GB-1 hypothetical protein YP_001667765.1 1713117 D 76869 CDS YP_001667766.1 167032535 5869301 1713979..1715451 1 NC_010322.1 KEGG: mmw:Mmwyl1_4303 conserved hypothetical protein; putative peptide signal; putative peptide signal 1715451 5869301 PputGB1_1525 Pseudomonas putida GB-1 putative peptide signal YP_001667766.1 1713979 D 76869 CDS YP_001667767.1 167032536 5869302 1715535..1716539 1 NC_010322.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1716539 5869302 PputGB1_1526 Pseudomonas putida GB-1 aspartate-semialdehyde dehydrogenase YP_001667767.1 1715535 D 76869 CDS YP_001667768.1 167032537 5869303 1716611..1719349 1 NC_010322.1 PFAM: Peptidoglycan-binding LysM; KEGG: pen:PSEEN1688 hypothetical protein; peptidoglycan-binding LysM 1719349 5869303 PputGB1_1527 Pseudomonas putida GB-1 peptidoglycan-binding LysM YP_001667768.1 1716611 D 76869 CDS YP_001667769.1 167032538 5869304 1719480..1720340 1 NC_010322.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1720340 truA 5869304 truA Pseudomonas putida GB-1 tRNA pseudouridine synthase A YP_001667769.1 1719480 D 76869 CDS YP_001667770.1 167032539 5869305 1720402..1721022 1 NC_010322.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1721022 5869305 PputGB1_1529 Pseudomonas putida GB-1 N-(5'-phosphoribosyl)anthranilate isomerase YP_001667770.1 1720402 D 76869 CDS YP_001667771.1 167032540 5869306 1721245..1722138 1 NC_010322.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1722138 5869306 PputGB1_1530 Pseudomonas putida GB-1 acetyl-CoA carboxylase subunit beta YP_001667771.1 1721245 D 76869 CDS YP_001667772.1 167032541 5869307 1722138..1723445 1 NC_010322.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN1692 folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1723445 5869307 PputGB1_1531 Pseudomonas putida GB-1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001667772.1 1722138 D 76869 CDS YP_001667773.1 167032542 5869308 1723429..1724079 1 NC_010322.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN1693 hypothetical protein; sporulation domain-containing protein 1724079 5869308 PputGB1_1532 Pseudomonas putida GB-1 sporulation domain-containing protein YP_001667773.1 1723429 D 76869 CDS YP_001667774.1 167032543 5869309 1724271..1724828 1 NC_010322.1 PFAM: Colicin V production protein; KEGG: pen:PSEEN1694 bacteriocin production protein CvpA; colicin V production protein 1724828 5869309 PputGB1_1533 Pseudomonas putida GB-1 colicin V production protein YP_001667774.1 1724271 D 76869 CDS YP_001667775.1 167032544 5869310 1724871..1726376 1 NC_010322.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1726376 5869310 PputGB1_1534 Pseudomonas putida GB-1 amidophosphoribosyltransferase YP_001667775.1 1724871 D 76869 CDS YP_001667776.1 167032545 5869311 1726393..1727604 1 NC_010322.1 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1727604 5869311 PputGB1_1535 Pseudomonas putida GB-1 O-succinylhomoserine sulfhydrylase YP_001667776.1 1726393 D 76869 CDS YP_001667777.1 167032546 5869312 1727601..1728374 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1697 oxidoreductase, short chain dehydrogenase/reductase family; oxidoreductase 1728374 5869312 PputGB1_1536 Pseudomonas putida GB-1 oxidoreductase YP_001667777.1 1727601 D 76869 CDS YP_001667778.1 167032547 5869317 1729316..1730128 1 NC_010322.1 KEGG: pen:PSEEN1700 hypothetical protein; hypothetical protein 1730128 5869317 PputGB1_1537 Pseudomonas putida GB-1 hypothetical protein YP_001667778.1 1729316 D 76869 CDS YP_001667779.1 167032548 5869318 complement(1730380..1731420) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1701 transcriptional regulator, AraC family; AraC family transcriptional regulator 1731420 5869318 PputGB1_1538 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001667779.1 1730380 R 76869 CDS YP_001667780.1 167032549 5869319 complement(1731425..1732543) 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1702 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1732543 5869319 PputGB1_1539 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001667780.1 1731425 R 76869 CDS YP_001667781.1 167032550 5869320 1732736..1734772 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN1703 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1734772 5869320 PputGB1_1540 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001667781.1 1732736 D 76869 CDS YP_001667782.1 167032551 5869321 1734869..1735762 1 NC_010322.1 KEGG: pen:PSEEN1704 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase 1735762 5869321 PputGB1_1541 Pseudomonas putida GB-1 1-aminocyclopropane-1-carboxylate deaminase YP_001667782.1 1734869 D 76869 CDS YP_001667783.1 167032552 5869322 complement(1735753..1736298) 1 NC_010322.1 PFAM: cytochrome B561; KEGG: pen:PSEEN1705 cytochrome b(561); cytochrome B561 1736298 5869322 PputGB1_1542 Pseudomonas putida GB-1 cytochrome B561 YP_001667783.1 1735753 R 76869 CDS YP_001667784.1 167032553 5869323 complement(1736435..1737412) 1 NC_010322.1 PFAM: Domain of unknown function DUF1853; KEGG: pen:PSEEN1707 hypothetical protein; hypothetical protein 1737412 5869323 PputGB1_1543 Pseudomonas putida GB-1 hypothetical protein YP_001667784.1 1736435 R 76869 CDS YP_001667785.1 167032554 5869324 1737456..1738346 1 NC_010322.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1738346 ppnK 5869324 ppnK Pseudomonas putida GB-1 inorganic polyphosphate/ATP-NAD kinase YP_001667785.1 1737456 D 76869 CDS YP_001667786.1 167032555 5869325 1738346..1739317 1 NC_010322.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN1709 serine/threonine protein phosphatase; metallophosphoesterase 1739317 5869325 PputGB1_1545 Pseudomonas putida GB-1 metallophosphoesterase YP_001667786.1 1738346 D 76869 CDS YP_001667787.1 167032556 5869326 1739314..1740201 1 NC_010322.1 PFAM: Rhomboid family protein; KEGG: pen:PSEEN1710 hypothetical protein; rhomboid family protein 1740201 5869326 PputGB1_1546 Pseudomonas putida GB-1 rhomboid family protein YP_001667787.1 1739314 D 76869 CDS YP_001667788.1 167032557 5869327 1740215..1740475 1 NC_010322.1 PFAM: protein of unknown function DUF1315; KEGG: pen:PSEEN1711 hypothetical protein; hypothetical protein 1740475 5869327 PputGB1_1547 Pseudomonas putida GB-1 hypothetical protein YP_001667788.1 1740215 D 76869 CDS YP_001667789.1 167032558 5869328 1740472..1741302 1 NC_010322.1 KEGG: pen:PSEEN1712 hypothetical protein; hypothetical protein 1741302 5869328 PputGB1_1548 Pseudomonas putida GB-1 hypothetical protein YP_001667789.1 1740472 D 76869 CDS YP_001667790.1 167032559 5869329 1741316..1743973 1 NC_010322.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pen:PSEEN1713 aminopeptidase N; aminopeptidase N 1743973 pepN 5869329 pepN Pseudomonas putida GB-1 aminopeptidase N YP_001667790.1 1741316 D 76869 CDS YP_001667791.1 167032560 5869330 1744158..1745186 1 NC_010322.1 KEGG: pen:PSEEN1714 hypothetical protein; hypothetical protein 1745186 5869330 PputGB1_1550 Pseudomonas putida GB-1 hypothetical protein YP_001667791.1 1744158 D 76869 CDS YP_001667792.1 167032561 5869331 1745183..1747582 1 NC_010322.1 KEGG: pen:PSEEN1715 hypothetical protein; hypothetical protein 1747582 5869331 PputGB1_1551 Pseudomonas putida GB-1 hypothetical protein YP_001667792.1 1745183 D 76869 CDS YP_001667793.1 167032562 5869332 1747646..1747936 1 NC_010322.1 KEGG: pen:PSEEN1716 hypothetical protein; hypothetical protein 1747936 5869332 PputGB1_1552 Pseudomonas putida GB-1 hypothetical protein YP_001667793.1 1747646 D 76869 CDS YP_001667794.1 167032563 5869333 1747890..1749032 1 NC_010322.1 KEGG: pen:PSEEN1717 hypothetical protein; hypothetical protein 1749032 5869333 PputGB1_1553 Pseudomonas putida GB-1 hypothetical protein YP_001667794.1 1747890 D 76869 CDS YP_001667795.1 167032564 5869334 1749155..1749334 1 NC_010322.1 KEGG: pen:PSEEN1719 hypothetical protein; hypothetical protein 1749334 5869334 PputGB1_1554 Pseudomonas putida GB-1 hypothetical protein YP_001667795.1 1749155 D 76869 CDS YP_001667796.1 167032565 5869335 complement(1749467..1750060) 1 NC_010322.1 PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1720 glutathione S-transferase; glutathione S-transferase domain-containing protein 1750060 5869335 PputGB1_1555 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001667796.1 1749467 R 76869 CDS YP_001667797.1 167032566 5869336 complement(1750057..1753701) 1 NC_010322.1 PFAM: SMC domain protein; KEGG: pen:PSEEN1721 exonuclease SbcC; SMC domain-containing protein 1753701 5869336 PputGB1_1556 Pseudomonas putida GB-1 SMC domain-containing protein YP_001667797.1 1750057 R 76869 CDS YP_001667798.1 167032567 5869337 complement(1753698..1754936) 1 NC_010322.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: pen:PSEEN1722 exonuclease SbcD; nuclease SbcCD subunit D 1754936 5869337 PputGB1_1557 Pseudomonas putida GB-1 nuclease SbcCD subunit D YP_001667798.1 1753698 R 76869 CDS YP_001667799.1 167032568 5869338 1755148..1755804 1 NC_010322.1 KEGG: cbd:COXBU7E912_A0039 rhs repeat domain protein; hypothetical protein 1755804 5869338 PputGB1_1558 Pseudomonas putida GB-1 hypothetical protein YP_001667799.1 1755148 D 76869 CDS YP_001667800.1 167032569 5869339 complement(1755960..1757594) 1 NC_010322.1 KEGG: pen:PSEEN1725 hypothetical protein; hypothetical protein 1757594 5869339 PputGB1_1559 Pseudomonas putida GB-1 hypothetical protein YP_001667800.1 1755960 R 76869 CDS YP_001667801.1 167032570 5869340 complement(1757591..1759306) 1 NC_010322.1 PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN1726 hypothetical protein; hypothetical protein 1759306 5869340 PputGB1_1560 Pseudomonas putida GB-1 hypothetical protein YP_001667801.1 1757591 R 76869 CDS YP_001667802.1 167032571 5869341 complement(1759303..1760379) 1 NC_010322.1 PFAM: von Willebrand factor type A; KEGG: pen:PSEEN1727 hypothetical protein; von Willebrand factor type A 1760379 5869341 PputGB1_1561 Pseudomonas putida GB-1 von Willebrand factor type A YP_001667802.1 1759303 R 76869 CDS YP_001667803.1 167032572 5869342 complement(1760372..1760866) 1 NC_010322.1 KEGG: pen:PSEEN1728 hypothetical protein; hypothetical protein 1760866 5869342 PputGB1_1562 Pseudomonas putida GB-1 hypothetical protein YP_001667803.1 1760372 R 76869 CDS YP_001667804.1 167032573 5869343 complement(1760863..1761807) 1 NC_010322.1 PFAM: protein of unknown function DUF58; KEGG: pen:PSEEN1729 hypothetical protein; hypothetical protein 1761807 5869343 PputGB1_1563 Pseudomonas putida GB-1 hypothetical protein YP_001667804.1 1760863 R 76869 CDS YP_001667805.1 167032574 5869344 complement(1761812..1762771) 1 NC_010322.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pen:PSEEN1730 ATPase, MoxR-like protein; ATPase 1762771 5869344 PputGB1_1564 Pseudomonas putida GB-1 ATPase YP_001667805.1 1761812 R 76869 CDS YP_001667806.1 167032575 5869345 1762998..1764308 1 NC_010322.1 KEGG: pap:PSPA7_3887 rhs element Vgr protein; hypothetical protein 1764308 5869345 PputGB1_1565 Pseudomonas putida GB-1 hypothetical protein YP_001667806.1 1762998 D 76869 CDS YP_001667807.1 167032576 5869346 complement(1764338..1765555) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4437 MFS efflux transporter; major facilitator superfamily transporter 1765555 5869346 PputGB1_1566 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001667807.1 1764338 R 76869 CDS YP_001667808.1 167032577 5869347 complement(1765614..1766828) 1 NC_010322.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: dac:Daci_3710 benzoate transporter; benzoate transporter 1766828 5869347 PputGB1_1567 Pseudomonas putida GB-1 benzoate transporter YP_001667808.1 1765614 R 76869 CDS YP_001667809.1 167032578 5869348 complement(1766905..1767792) 1 NC_010322.1 PFAM: dihydrodipicolinate synthetase; KEGG: pap:PSPA7_0309 probable dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 1767792 5869348 PputGB1_1568 Pseudomonas putida GB-1 dihydrodipicolinate synthetase YP_001667809.1 1766905 R 76869 CDS YP_001667810.1 167032579 5869349 complement(1767837..1768619) 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: pae:PA0224 hypothetical protein; class II aldolase/adducin domain-containing protein 1768619 5869349 PputGB1_1569 Pseudomonas putida GB-1 class II aldolase/adducin domain-containing protein YP_001667810.1 1767837 R 76869 CDS YP_001667811.1 167032580 5869350 1768803..1769276 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_1910 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1769276 5869350 PputGB1_1570 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001667811.1 1768803 D 76869 CDS YP_001667812.1 167032581 5869351 complement(1769379..1771523) 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; KEGG: mfa:Mfla_1729 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 1771523 5869351 PputGB1_1571 Pseudomonas putida GB-1 HAD family hydrolase YP_001667812.1 1769379 R 76869 CDS YP_001667813.1 167032582 5869352 1771920..1772216 1 NC_010322.1 KEGG: pfl:PFL_2311 hypothetical protein; hypothetical protein 1772216 5869352 PputGB1_1572 Pseudomonas putida GB-1 hypothetical protein YP_001667813.1 1771920 D 76869 CDS YP_001667814.1 167032583 5869353 complement(1772320..1773213) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_1268 putative HTH-type transcriptional regulator YbhD; LysR family transcriptional regulator 1773213 5869353 PputGB1_1573 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667814.1 1772320 R 76869 CDS YP_001667815.1 167032584 5869354 1773361..1774440 1 NC_010322.1 PFAM: protein of unknown function DUF453; KEGG: pap:PSPA7_1269 FldA protein; hypothetical protein 1774440 5869354 PputGB1_1574 Pseudomonas putida GB-1 hypothetical protein YP_001667815.1 1773361 D 76869 CDS YP_001667816.1 167032585 5869355 1774514..1775830 1 NC_010322.1 PFAM: sodium:dicarboxylate symporter; KEGG: pap:PSPA7_1270 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 1775830 5869355 PputGB1_1575 Pseudomonas putida GB-1 sodium:dicarboxylate symporter YP_001667816.1 1774514 D 76869 CDS YP_001667817.1 167032586 5869356 1775954..1777258 1 NC_010322.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pap:PSPA7_1271 citrate transporter; CitMHS family citrate/H+ symporter 1777258 5869356 PputGB1_1576 Pseudomonas putida GB-1 CitMHS family citrate/H+ symporter YP_001667817.1 1775954 D 76869 CDS YP_001667818.1 167032587 5869357 1777326..1778579 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pap:PSPA7_1272 outer membrane porin OprE; outer membrane porin 1778579 5869357 PputGB1_1577 Pseudomonas putida GB-1 outer membrane porin YP_001667818.1 1777326 D 76869 CDS YP_001667819.1 167032588 5869358 complement(1778632..1778880) 1 NC_010322.1 PFAM: CsbD family protein; KEGG: pfl:PFL_2569 hypothetical protein; CsbD family protein 1778880 5869358 PputGB1_1578 Pseudomonas putida GB-1 CsbD family protein YP_001667819.1 1778632 R 76869 CDS YP_001667820.1 167032589 5869359 complement(1779140..1779595) 1 NC_010322.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_4538 transcriptional regulator, MerR family; MerR family transcriptional regulator 1779595 5869359 PputGB1_1579 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001667820.1 1779140 R 76869 CDS YP_001667821.1 167032590 5869360 1779680..1780777 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pap:PSPA7_0892 probable RND efflux membrane fusion protein precursor; RND family efflux transporter MFP subunit 1780777 5869360 PputGB1_1580 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001667821.1 1779680 D 76869 CDS YP_001667822.1 167032591 5869361 1780774..1783854 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_0891 probable RND efflux transporter; acriflavin resistance protein 1783854 5869361 PputGB1_1581 Pseudomonas putida GB-1 acriflavin resistance protein YP_001667822.1 1780774 D 76869 CDS YP_001667823.1 167032592 5869362 complement(1783879..1784616) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: dac:Daci_1440 transcriptional regulator, GntR family; GntR family transcriptional regulator 1784616 5869362 PputGB1_1582 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001667823.1 1783879 R 76869 CDS YP_001667824.1 167032593 5869363 complement(1784717..1785160) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_45980 putative acetyltransferase; N-acetyltransferase GCN5 1785160 5869363 PputGB1_1583 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001667824.1 1784717 R 76869 CDS YP_001667825.1 167032594 5869364 1785374..1786348 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_1484 transcriptional regulator, LysR family; LysR family transcriptional regulator 1786348 5869364 PputGB1_1584 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001667825.1 1785374 D 76869 CDS YP_001667826.1 167032595 5869365 complement(1786345..1788831) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2293 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 1788831 5869365 PputGB1_1585 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001667826.1 1786345 R 76869 CDS YP_001667827.1 167032596 5869366 complement(1788942..1789877) 1 NC_010322.1 PFAM: FecR protein; KEGG: pau:PA14_28980 possible Fe2+-dicitrate sensor; anti-FecI sigma factor FecR 1789877 5869366 PputGB1_1586 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001667827.1 1788942 R 76869 CDS YP_001667828.1 167032597 5869367 complement(1789882..1790382) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1790382 5869367 PputGB1_1587 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001667828.1 1789882 R 76869 CDS YP_001667829.1 167032598 5869368 complement(1790491..1791723) 1 NC_010322.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 1791723 5869368 PputGB1_1588 Pseudomonas putida GB-1 diaminopimelate decarboxylase YP_001667829.1 1790491 R 76869 CDS YP_001667830.1 167032599 5869369 1791817..1792752 1 NC_010322.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 1792752 5869369 PputGB1_1589 Pseudomonas putida GB-1 DNA-binding transcriptional regulator LysR YP_001667830.1 1791817 D 76869 CDS YP_001667831.1 167032600 5869370 complement(1792761..1793114) 1 NC_010322.1 KEGG: pen:PSEEN1739 hypothetical protein; hypothetical protein 1793114 5869370 PputGB1_1590 Pseudomonas putida GB-1 hypothetical protein YP_001667831.1 1792761 R 76869 CDS YP_001667832.1 167032601 5869371 1793388..1798253 1 NC_010322.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pen:PSEEN1740 NAD-specific glutamate dehydrogenase; arginine inducible; NAD-glutamate dehydrogenase 1798253 5869371 PputGB1_1591 Pseudomonas putida GB-1 NAD-glutamate dehydrogenase YP_001667832.1 1793388 D 76869 CDS YP_001667833.1 167032602 5869372 complement(1798357..1799175) 1 NC_010322.1 PFAM: protein of unknown function DUF299; KEGG: pen:PSEEN1741 hypothetical protein; hypothetical protein 1799175 5869372 PputGB1_1592 Pseudomonas putida GB-1 hypothetical protein YP_001667833.1 1798357 R 76869 CDS YP_001667834.1 167032603 5869373 1799367..1801742 1 NC_010322.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1801742 5869373 PputGB1_1593 Pseudomonas putida GB-1 phosphoenolpyruvate synthase YP_001667834.1 1799367 D 76869 CDS YP_001667835.1 167032604 5869374 1801808..1802836 1 NC_010322.1 KEGG: pen:PSEEN1743 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 1802836 5869374 PputGB1_1594 Pseudomonas putida GB-1 alpha/beta fold family hydrolase YP_001667835.1 1801808 D 76869 CDS YP_001667836.1 167032605 5869375 1802994..1803485 1 NC_010322.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1803485 5869375 PputGB1_1595 Pseudomonas putida GB-1 ribonuclease activity regulator protein RraA YP_001667836.1 1802994 D 76869 CDS YP_001667837.1 167032606 5869376 1803513..1804508 1 NC_010322.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1745 metal ion transporter CmaX protein; Mg2 transporter protein CorA family protein 1804508 5869376 PputGB1_1596 Pseudomonas putida GB-1 Mg2 transporter protein CorA family protein YP_001667837.1 1803513 D 76869 CDS YP_001667838.1 167032607 5869377 1804596..1804868 1 NC_010322.1 KEGG: pen:PSEEN1747 hypothetical protein; hypothetical protein 1804868 5869377 PputGB1_1597 Pseudomonas putida GB-1 hypothetical protein YP_001667838.1 1804596 D 76869 CDS YP_001667839.1 167032608 5869378 1804871..1805695 1 NC_010322.1 PFAM: Conserved TM helix repeat-containing protein; KEGG: pen:PSEEN1748 hypothetical protein; TM helix repeat-containing protein 1805695 5869378 PputGB1_1598 Pseudomonas putida GB-1 TM helix repeat-containing protein YP_001667839.1 1804871 D 76869 CDS YP_001667840.1 167032609 5869379 1805810..1806376 1 NC_010322.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 1806376 5869379 PputGB1_1599 Pseudomonas putida GB-1 RNA polymerase sigma factor SigX YP_001667840.1 1805810 D 76869 CDS YP_001667841.1 167032610 5869380 1806488..1807522 1 NC_010322.1 PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: psp:PSPPH_2068 OprF; OmpF family protein 1807522 5869380 PputGB1_1600 Pseudomonas putida GB-1 OmpF family protein YP_001667841.1 1806488 D 76869 CDS YP_001667842.1 167032611 5869381 complement(1807619..1808359) 1 NC_010322.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 1808359 5869381 PputGB1_1601 Pseudomonas putida GB-1 uroporphyrin-III C-methyltransferase YP_001667842.1 1807619 R 76869 CDS YP_001667843.1 167032612 5869382 complement(1808386..1810056) 1 NC_010322.1 SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: pen:PSEEN1751 bifunctional serine/threonine-protein kinase and phosphatase; protein serine/threonine phosphatase 1810056 5869382 PputGB1_1602 Pseudomonas putida GB-1 protein serine/threonine phosphatase YP_001667843.1 1808386 R 76869 CDS YP_001667844.1 167032613 5869383 complement(1810058..1811269) 1 NC_010322.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1752 nitrate transporter; nitrite transporter 1811269 5869383 PputGB1_1603 Pseudomonas putida GB-1 nitrite transporter YP_001667844.1 1810058 R 76869 CDS YP_001667845.1 167032614 5869384 complement(1811473..1812048) 1 NC_010322.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: pen:PSEEN1753 response regulator NasT; response regulator receiver/ANTAR domain-containing protein 1812048 5869384 PputGB1_1604 Pseudomonas putida GB-1 response regulator receiver/ANTAR domain-containing protein YP_001667845.1 1811473 R 76869 CDS YP_001667846.1 167032615 5869385 complement(1812060..1813325) 1 NC_010322.1 KEGG: pen:PSEEN1754 nitrate-binding protein NasS; nitrate-binding protein NasS 1813325 5869385 PputGB1_1605 Pseudomonas putida GB-1 nitrate-binding protein NasS YP_001667846.1 1812060 R 76869 CDS YP_001667847.1 167032616 5869386 1813412..1814437 1 NC_010322.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1814437 5869386 PputGB1_1606 Pseudomonas putida GB-1 dihydroorotate dehydrogenase 2 YP_001667847.1 1813412 D 76869 CDS YP_001667848.1 167032617 5869387 complement(1814534..1814749) 1 NC_010322.1 PFAM: ribosome modulation factor; KEGG: pen:PSEEN1756 ribosome modulation factor; ribosome modulation factor 1814749 5869387 PputGB1_1607 Pseudomonas putida GB-1 ribosome modulation factor YP_001667848.1 1814534 R 76869 CDS YP_001667849.1 167032618 5869388 1815311..1817503 1 NC_010322.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1817503 rlmL 5869388 rlmL Pseudomonas putida GB-1 23S rRNA m(2)G2445 methyltransferase YP_001667849.1 1815311 D 76869 CDS YP_001667850.1 167032619 5869389 1817598..1819988 1 NC_010322.1 KEGG: pen:PSEEN1758 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1819988 5869389 PputGB1_1609 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase YP_001667850.1 1817598 D 76869 CDS YP_001667851.1 167032620 5869390 complement(1820058..1821515) 1 NC_010322.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pen:PSEEN3770 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1821515 5869390 PputGB1_1610 Pseudomonas putida GB-1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001667851.1 1820058 R 76869 CDS YP_001667852.1 167032621 5869391 complement(1821715..1822059) 1 NC_010322.1 PFAM: protein of unknown function DUF469; KEGG: pen:PSEEN3769 hypothetical protein; hypothetical protein 1822059 5869391 PputGB1_1611 Pseudomonas putida GB-1 hypothetical protein YP_001667852.1 1821715 R 76869 CDS YP_001667853.1 167032622 5869392 complement(1822101..1823447) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; histidine kinase 1823447 5869392 PputGB1_1612 Pseudomonas putida GB-1 histidine kinase YP_001667853.1 1822101 R 76869 CDS YP_001667854.1 167032623 5869393 1823952..1824230 1 NC_010322.1 PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 1824230 5869393 PputGB1_1613 Pseudomonas putida GB-1 transposase IS3/IS911 family protein YP_001667854.1 1823952 D 76869 CDS YP_001667855.1 167032624 5869394 1824221..1825102 1 NC_010322.1 PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 1825102 5869394 PputGB1_1614 Pseudomonas putida GB-1 integrase catalytic subunit YP_001667855.1 1824221 D 76869 CDS YP_001667856.1 167032625 5869395 1825306..1826817 1 NC_010322.1 KEGG: xcv:XCV1411 heat shock protein; heat shock protein 1826817 5869395 PputGB1_1615 Pseudomonas putida GB-1 heat shock protein YP_001667856.1 1825306 D 76869 CDS YP_001667857.1 167032626 5869396 1826861..1828150 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: hha:Hhal_1314 beta-lactamase domain protein; beta-lactamase domain-containing protein 1828150 5869396 PputGB1_1616 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001667857.1 1826861 D 76869 CDS YP_001667858.1 167032627 5869397 complement(1828255..1828773) 1 NC_010322.1 PFAM: Group II intron maturase-specific domain protein; KEGG: ajs:Ajs_2219 RNA-directed DNA polymerase; group II intron maturase-specific domain-containing protein 1828773 5869397 PputGB1_1617 Pseudomonas putida GB-1 group II intron maturase-specific domain-containing protein YP_001667858.1 1828255 R 76869 CDS YP_001667859.1 167032628 5869398 1830344..1831762 1 NC_010322.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ste:STER_1356 radical SAM superfamily enzyme; radical SAM domain-containing protein 1831762 5869398 PputGB1_1618 Pseudomonas putida GB-1 radical SAM domain-containing protein YP_001667859.1 1830344 D 76869 CDS YP_001667860.1 167032629 5869399 complement(1833124..1833405) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4630 transcriptional regulator, PbsX family; XRE family transcriptional regulator 1833405 5869399 PputGB1_1619 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001667860.1 1833124 R 76869 CDS YP_001667861.1 167032630 5869400 1833585..1833971 1 NC_010322.1 KEGG: ajs:Ajs_0813 hypothetical protein; hypothetical protein 1833971 5869400 PputGB1_1620 Pseudomonas putida GB-1 hypothetical protein YP_001667861.1 1833585 D 76869 CDS YP_001667862.1 167032631 5869401 1833992..1834654 1 NC_010322.1 hypothetical protein 1834654 5869401 PputGB1_1621 Pseudomonas putida GB-1 hypothetical protein YP_001667862.1 1833992 D 76869 CDS YP_001667863.1 167032632 5869402 1834668..1835168 1 NC_010322.1 hypothetical protein 1835168 5869402 PputGB1_1622 Pseudomonas putida GB-1 hypothetical protein YP_001667863.1 1834668 D 76869 CDS YP_001667864.1 167032633 5869403 1835488..1835775 1 NC_010322.1 hypothetical protein 1835775 5869403 PputGB1_1623 Pseudomonas putida GB-1 hypothetical protein YP_001667864.1 1835488 D 76869 CDS YP_001667865.1 167032634 5869404 1836088..1836756 1 NC_010322.1 KEGG: xcb:XC_2074 hypothetical protein; hypothetical protein 1836756 5869404 PputGB1_1624 Pseudomonas putida GB-1 hypothetical protein YP_001667865.1 1836088 D 76869 CDS YP_001667866.1 167032635 5869405 1836753..1837853 1 NC_010322.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: hch:HCH_06283 predicted Zn peptidase; hypothetical protein 1837853 5869405 PputGB1_1625 Pseudomonas putida GB-1 hypothetical protein YP_001667866.1 1836753 D 76869 CDS YP_001667867.1 167032636 5869406 1838019..1838225 1 NC_010322.1 hypothetical protein 1838225 5869406 PputGB1_1626 Pseudomonas putida GB-1 hypothetical protein YP_001667867.1 1838019 D 76869 CDS YP_001667868.1 167032637 5869407 1838550..1838711 1 NC_010322.1 KEGG: ent:Ent638_1530 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1838711 5869407 PputGB1_1627 Pseudomonas putida GB-1 transposase IS116/IS110/IS902 family protein YP_001667868.1 1838550 D 76869 CDS YP_001667869.1 167032638 5869408 1839105..1841159 1 NC_010322.1 KEGG: rru:Rru_A3021 hypothetical protein; hypothetical protein 1841159 5869408 PputGB1_1628 Pseudomonas putida GB-1 hypothetical protein YP_001667869.1 1839105 D 76869 CDS YP_001667870.1 167032639 5869409 1841524..1842123 1 NC_010322.1 KEGG: vvy:VV1821 hypothetical protein; hypothetical protein 1842123 5869409 PputGB1_1629 Pseudomonas putida GB-1 hypothetical protein YP_001667870.1 1841524 D 76869 CDS YP_001667871.1 167032640 5869410 complement(1842916..1843548) 1 NC_010322.1 KEGG: psp:PSPPH_4978 prophage PSPPH06, putative reverse transcriptase/maturase; prophage PSPPH06, putative reverse transcriptase/maturase 1843548 5869410 PputGB1_1630 Pseudomonas putida GB-1 prophage PSPPH06, putative reverse transcriptase/maturase YP_001667871.1 1842916 R 76869 CDS YP_001667872.1 167032641 5869412 complement(1845585..1846598) 1 NC_010322.1 KEGG: gur:Gura_3511 hypothetical protein; hypothetical protein 1846598 5869412 PputGB1_1633 Pseudomonas putida GB-1 hypothetical protein YP_001667872.1 1845585 R 76869 CDS YP_001667873.1 167032642 5869413 1846846..1847262 1 NC_010322.1 KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 1847262 5869413 PputGB1_1634 Pseudomonas putida GB-1 hypothetical protein YP_001667873.1 1846846 D 76869 CDS YP_001667874.1 167032643 5869414 1847667..1849103 1 NC_010322.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: psp:PSPPH_4979 prophage PSPPH06, putative reverse transcriptase/maturase; RNA-directed DNA polymerase 1849103 5869414 PputGB1_1635 Pseudomonas putida GB-1 RNA-directed DNA polymerase YP_001667874.1 1847667 D 76869 CDS YP_001667875.1 167032644 5869415 1850583..1850867 1 NC_010322.1 KEGG: psb:Psyr_4647 hypothetical protein; hypothetical protein 1850867 5869415 PputGB1_1636 Pseudomonas putida GB-1 hypothetical protein YP_001667875.1 1850583 D 76869 CDS YP_001667876.1 167032645 5869416 complement(1850916..1851860) 1 NC_010322.1 KEGG: gka:GK0172 Hnh endonuclease; restriction endonuclease-like protein 1851860 5869416 PputGB1_1637 Pseudomonas putida GB-1 restriction endonuclease-like protein YP_001667876.1 1850916 R 76869 CDS YP_001667877.1 167032646 5869417 complement(1852561..1853940) 1 NC_010322.1 PFAM: integrase family protein; KEGG: mmw:Mmwyl1_4220 phage integrase family protein; integrase family protein 1853940 5869417 PputGB1_1638 Pseudomonas putida GB-1 integrase family protein YP_001667877.1 1852561 R 76869 CDS YP_001667878.1 167032647 5869418 complement(1853937..1854461) 1 NC_010322.1 hypothetical protein 1854461 5869418 PputGB1_1639 Pseudomonas putida GB-1 hypothetical protein YP_001667878.1 1853937 R 76869 CDS YP_001667879.1 167032648 5869419 complement(1854461..1856713) 1 NC_010322.1 KEGG: mmw:Mmwyl1_4222 phage integrase family protein; hypothetical protein 1856713 5869419 PputGB1_1640 Pseudomonas putida GB-1 hypothetical protein YP_001667879.1 1854461 R 76869 CDS YP_001667880.1 167032649 5869420 complement(1856706..1858967) 1 NC_010322.1 KEGG: mmw:Mmwyl1_4223 hypothetical protein; hypothetical protein 1858967 5869420 PputGB1_1641 Pseudomonas putida GB-1 hypothetical protein YP_001667880.1 1856706 R 76869 CDS YP_001667881.1 167032650 5869421 complement(1859258..1861648) 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; putative PAS/PAC sensor protein 1861648 5869421 PputGB1_1642 Pseudomonas putida GB-1 putative PAS/PAC sensor protein YP_001667881.1 1859258 R 76869 CDS YP_001667882.1 167032651 5869422 complement(1861657..1862274) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3767 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1862274 5869422 PputGB1_1643 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001667882.1 1861657 R 76869 CDS YP_001667883.1 167032652 5869423 complement(1862558..1863943) 1 NC_010322.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1863943 5869423 PputGB1_1644 Pseudomonas putida GB-1 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001667883.1 1862558 R 76869 CDS YP_001667884.1 167032653 5869424 complement(1863971..1864300) 1 NC_010322.1 KEGG: pen:PSEEN3765 hypothetical protein; hypothetical protein 1864300 5869424 PputGB1_1645 Pseudomonas putida GB-1 hypothetical protein YP_001667884.1 1863971 R 76869 CDS YP_001667885.1 167032654 5869425 complement(1864297..1864671) 1 NC_010322.1 KEGG: pen:PSEEN3764 hypothetical protein; hypothetical protein 1864671 5869425 PputGB1_1646 Pseudomonas putida GB-1 hypothetical protein YP_001667885.1 1864297 R 76869 CDS YP_001667886.1 167032655 5869426 complement(1864681..1864995) 1 NC_010322.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3763 hypothetical protein; hypothetical protein 1864995 5869426 PputGB1_1647 Pseudomonas putida GB-1 hypothetical protein YP_001667886.1 1864681 R 76869 CDS YP_001667887.1 167032656 5869427 1865309..1866517 1 NC_010322.1 PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN3762 ammonium transporter; Rh family protein/ammonium transporter 1866517 5869427 PputGB1_1648 Pseudomonas putida GB-1 Rh family protein/ammonium transporter YP_001667887.1 1865309 D 76869 CDS YP_001667888.1 167032657 5869428 1866591..1866830 1 NC_010322.1 PFAM: glutaredoxin 2; KEGG: pen:PSEEN3761 hypothetical protein; glutaredoxin 1866830 5869428 PputGB1_1649 Pseudomonas putida GB-1 glutaredoxin YP_001667888.1 1866591 D 76869 CDS YP_001667889.1 167032658 5869429 1866938..1867369 1 NC_010322.1 PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein; peptidase M15A 1867369 5869429 PputGB1_1650 Pseudomonas putida GB-1 peptidase M15A YP_001667889.1 1866938 D 76869 CDS YP_001667890.1 167032659 5869430 1867435..1867743 1 NC_010322.1 KEGG: pen:PSEEN3760 hypothetical protein; hypothetical protein 1867743 5869430 PputGB1_1651 Pseudomonas putida GB-1 hypothetical protein YP_001667890.1 1867435 D 76869 CDS YP_001667891.1 167032660 5869431 1867795..1868679 1 NC_010322.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN3759 pseudouridylate synthase; pseudouridine synthase 1868679 5869431 PputGB1_1652 Pseudomonas putida GB-1 pseudouridine synthase YP_001667891.1 1867795 D 76869 CDS YP_001667892.1 167032661 5869432 complement(1868767..1870332) 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3758 aerotaxis receptor; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 1870332 5869432 PputGB1_1653 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001667892.1 1868767 R 76869 CDS YP_001667893.1 167032662 5869433 complement(1870494..1873235) 1 NC_010322.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1873235 acnA 5869433 acnA Pseudomonas putida GB-1 aconitate hydratase YP_001667893.1 1870494 R 76869 CDS YP_001667894.1 167032663 5869434 1873460..1874524 1 NC_010322.1 KEGG: pen:PSEEN3755 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 1874524 5869434 PputGB1_1655 Pseudomonas putida GB-1 putative RNA 2'-O-ribose methyltransferase YP_001667894.1 1873460 D 76869 CDS YP_001667895.1 167032664 5869435 1875343..1875585 1 NC_010322.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1875585 5869435 PputGB1_1656 Pseudomonas putida GB-1 sulfur transfer protein SirA YP_001667895.1 1875343 D 76869 CDS YP_001667896.1 167032665 5869436 1875646..1876788 1 NC_010322.1 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1876788 5869436 PputGB1_1657 Pseudomonas putida GB-1 erythronate-4-phosphate dehydrogenase YP_001667896.1 1875646 D 76869 CDS YP_001667897.1 167032666 5869437 complement(1876848..1877021) 1 NC_010322.1 KEGG: pen:PSEEN3752 hypothetical protein; hypothetical protein 1877021 5869437 PputGB1_1658 Pseudomonas putida GB-1 hypothetical protein YP_001667897.1 1876848 R 76869 CDS YP_001667898.1 167032667 5869438 1877192..1878994 1 NC_010322.1 KEGG: pen:PSEEN3751 ABC efflux transporter, permease/ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1878994 5869438 PputGB1_1659 Pseudomonas putida GB-1 lipid ABC transporter ATPase/inner membrane protein YP_001667898.1 1877192 D 76869 CDS YP_001667899.1 167032668 5869439 1879165..1880781 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN3750 methyl-accepting chemotaxis histidine kinase; methyl-accepting chemotaxis sensory transducer 1880781 5869439 PputGB1_1660 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001667899.1 1879165 D 76869 CDS YP_001667900.1 167032669 5869440 1880966..1882546 1 NC_010322.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1882546 5869440 PputGB1_1661 Pseudomonas putida GB-1 malate:quinone oxidoreductase YP_001667900.1 1880966 D 76869 CDS YP_001667901.1 167032670 5869442 complement(1882760..1882981) 1 NC_010322.1 PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN3747 hypothetical protein; hypothetical protein 1882981 5869442 PputGB1_1662 Pseudomonas putida GB-1 hypothetical protein YP_001667901.1 1882760 R 76869 CDS YP_001667902.1 167032671 5869443 1883169..1883708 1 NC_010322.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN3745 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1883708 5869443 PputGB1_1663 Pseudomonas putida GB-1 molybdenum cofactor biosynthesis protein B YP_001667902.1 1883169 D 76869 CDS YP_001667903.1 167032672 5869444 1883701..1884918 1 NC_010322.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pen:PSEEN3744 molybdopterin biosynthesis protein, molybdenum incorporation step; molybdenum cofactor synthesis domain-containing protein 1884918 5869444 PputGB1_1664 Pseudomonas putida GB-1 molybdenum cofactor synthesis domain-containing protein YP_001667903.1 1883701 D 76869 CDS YP_001667904.1 167032673 5869445 complement(1884907..1886154) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN3743 glycosyl transferase; glycosyl transferase group 1 protein 1886154 5869445 PputGB1_1665 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001667904.1 1884907 R 76869 CDS YP_001667905.1 167032674 5869446 1886385..1887272 1 NC_010322.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1887272 5869446 PputGB1_1666 Pseudomonas putida GB-1 lipid kinase YP_001667905.1 1886385 D 76869 CDS YP_001667906.1 167032675 5869447 complement(1887256..1887915) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3740 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1887915 5869447 PputGB1_1667 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001667906.1 1887256 R 76869 CDS YP_001667907.1 167032676 5869448 complement(1887905..1888801) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pen:PSEEN3739 sensor histidine kinase; histidine kinase 1888801 5869448 PputGB1_1668 Pseudomonas putida GB-1 histidine kinase YP_001667907.1 1887905 R 76869 CDS YP_001667908.1 167032677 5869449 complement(1889167..1889679) 1 NC_010322.1 KEGG: pen:PSEEN3737 hypothetical protein; putative CheA signal transduction histidine kinase 1889679 5869449 PputGB1_1669 Pseudomonas putida GB-1 putative CheA signal transduction histidine kinase YP_001667908.1 1889167 R 76869 CDS YP_001667909.1 167032678 5869450 1890027..1890962 1 NC_010322.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3735 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1890962 5869450 PputGB1_1670 Pseudomonas putida GB-1 response regulator receiver modulated CheW protein YP_001667909.1 1890027 D 76869 CDS YP_001667910.1 167032679 5869451 1891018..1891821 1 NC_010322.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pen:PSEEN3734 hypothetical protein; MOSC domain-containing protein 1891821 5869451 PputGB1_1671 Pseudomonas putida GB-1 MOSC domain-containing protein YP_001667910.1 1891018 D 76869 CDS YP_001667911.1 167032680 5869452 complement(1891903..1893828) 1 NC_010322.1 PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN3733 lytic murein transglycosylase, soluble; lytic transglycosylase 1893828 5869452 PputGB1_1672 Pseudomonas putida GB-1 lytic transglycosylase YP_001667911.1 1891903 R 76869 CDS YP_001667912.1 167032681 5869453 1894050..1895978 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3732 ABC transporter, ATP-binding protein; ABC transporter-like protein 1895978 5869453 PputGB1_1673 Pseudomonas putida GB-1 ABC transporter-like protein YP_001667912.1 1894050 D 76869 CDS YP_001667913.1 167032682 5869454 complement(1896042..1896482) 1 NC_010322.1 PFAM: UspA domain protein; KEGG: pen:PSEEN3731 universal stress protein family; UspA domain-containing protein 1896482 5869454 PputGB1_1674 Pseudomonas putida GB-1 UspA domain-containing protein YP_001667913.1 1896042 R 76869 CDS YP_001667914.1 167032683 5869455 1896593..1897030 1 NC_010322.1 KEGG: pen:PSEEN3730 hypothetical protein; hypothetical protein 1897030 5869455 PputGB1_1675 Pseudomonas putida GB-1 hypothetical protein YP_001667914.1 1896593 D 76869 CDS YP_001667915.1 167032684 5869456 1897562..1899709 1 NC_010322.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1899709 fadB 5869456 fadB Pseudomonas putida GB-1 multifunctional fatty acid oxidation complex subunit alpha YP_001667915.1 1897562 D 76869 CDS YP_001667916.1 167032685 5869457 1899741..1900916 1 NC_010322.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1900916 fadA 5869457 fadA Pseudomonas putida GB-1 3-ketoacyl-CoA thiolase YP_001667916.1 1899741 D 76869 CDS YP_001667917.1 167032686 5869458 1900994..1901245 1 NC_010322.1 PFAM: protein of unknown function DUF1653; KEGG: pen:PSEEN3726 hypothetical protein; hypothetical protein 1901245 5869458 PputGB1_1678 Pseudomonas putida GB-1 hypothetical protein YP_001667917.1 1900994 D 76869 CDS YP_001667918.1 167032687 5869459 1901346..1903955 1 NC_010322.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1903955 5869459 PputGB1_1679 Pseudomonas putida GB-1 DNA topoisomerase I YP_001667918.1 1901346 D 76869 CDS YP_001667919.1 167032688 5869460 1904047..1904562 1 NC_010322.1 KEGG: pen:PSEEN3724 hypothetical protein; hypothetical protein 1904562 5869460 PputGB1_1680 Pseudomonas putida GB-1 hypothetical protein YP_001667919.1 1904047 D 76869 CDS YP_001667920.1 167032689 5869461 1904613..1904846 1 NC_010322.1 KEGG: pen:PSEEN3723 hypothetical protein; hypothetical protein 1904846 5869461 PputGB1_1681 Pseudomonas putida GB-1 hypothetical protein YP_001667920.1 1904613 D 76869 CDS YP_001667921.1 167032690 5869462 complement(1904897..1905373) 1 NC_010322.1 KEGG: pen:PSEEN3722 cell division inhibitor-related protein, SulA-like; cell division inhibitor-like protein, SulA-like protein 1905373 5869462 PputGB1_1682 Pseudomonas putida GB-1 cell division inhibitor-like protein, SulA-like protein YP_001667921.1 1904897 R 76869 CDS YP_001667922.1 167032691 5869463 complement(1905387..1905995) 1 NC_010322.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1905995 5869463 PputGB1_1683 Pseudomonas putida GB-1 LexA repressor YP_001667922.1 1905387 R 76869 CDS YP_001667923.1 167032692 5869464 1906211..1906918 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_1950 transcriptional regulator, TetR family; TetR family transcriptional regulator 1906918 5869464 PputGB1_1684 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001667923.1 1906211 D 76869 CDS YP_001667924.1 167032693 5869465 1906959..1907498 1 NC_010322.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN3719 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1907498 5869465 PputGB1_1685 Pseudomonas putida GB-1 ErfK/YbiS/YcfS/YnhG family protein YP_001667924.1 1906959 D 76869 CDS YP_001667925.1 167032694 5869466 1907495..1908505 1 NC_010322.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1908505 5869466 PputGB1_1686 Pseudomonas putida GB-1 beta-hexosaminidase YP_001667925.1 1907495 D 76869 CDS YP_001667926.1 167032695 5869467 complement(1908570..1911887) 1 NC_010322.1 KEGG: pen:PSEEN3717 helicase, SNF2/RAD54 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 1911887 5869467 PputGB1_1687 Pseudomonas putida GB-1 non-specific serine/threonine protein kinase YP_001667926.1 1908570 R 76869 CDS YP_001667927.1 167032696 5869468 complement(1911889..1912461) 1 NC_010322.1 KEGG: pen:PSEEN3716 hypothetical protein; hypothetical protein 1912461 5869468 PputGB1_1688 Pseudomonas putida GB-1 hypothetical protein YP_001667927.1 1911889 R 76869 CDS YP_001667928.1 167032697 5869469 complement(1912471..1915896) 1 NC_010322.1 KEGG: pen:PSEEN3715 transcription-repair coupling protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 1915896 5869469 PputGB1_1689 Pseudomonas putida GB-1 transcription-repair coupling factor YP_001667928.1 1912471 R 76869 CDS YP_001667929.1 167032698 5869470 1916088..1917551 1 NC_010322.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1917551 5869470 PputGB1_1690 Pseudomonas putida GB-1 glyceraldehyde-3-phosphate dehydrogenase YP_001667929.1 1916088 D 76869 CDS YP_001667930.1 167032699 5869471 1917709..1918725 1 NC_010322.1 PFAM: ApbE family lipoprotein; KEGG: pen:PSEEN3713 thiamine biosynthesis lipoprotein ApbE-like; ApbE family lipoprotein 1918725 5869471 PputGB1_1691 Pseudomonas putida GB-1 ApbE family lipoprotein YP_001667930.1 1917709 D 76869 CDS YP_001667931.1 167032700 5869472 1918912..1920306 1 NC_010322.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1920306 5869472 PputGB1_1692 Pseudomonas putida GB-1 soluble pyridine nucleotide transhydrogenase YP_001667931.1 1918912 D 76869 CDS YP_001667932.1 167032701 5869473 complement(1920355..1921071) 1 NC_010322.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN3710 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1921071 5869473 PputGB1_1693 Pseudomonas putida GB-1 glycerophosphoryl diester phosphodiesterase YP_001667932.1 1920355 R 76869 CDS YP_001667933.1 167032702 5869474 complement(1921103..1921687) 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3709 hypothetical protein; type IV pilus assembly PilZ 1921687 5869474 PputGB1_1694 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001667933.1 1921103 R 76869 CDS YP_001667934.1 167032703 5869475 1921781..1923031 1 NC_010322.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3708 lipoprotein releasing system transmembrane protein LolC; LolC/E family lipoprotein releasing system, transmembrane protein 1923031 5869475 PputGB1_1695 Pseudomonas putida GB-1 LolC/E family lipoprotein releasing system, transmembrane protein YP_001667934.1 1921781 D 76869 CDS YP_001667935.1 167032704 5869476 1923024..1923722 1 NC_010322.1 KEGG: pen:PSEEN3707 lipoprotein releasing system, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1923722 5869476 PputGB1_1696 Pseudomonas putida GB-1 lipoprotein releasing system, ATP-binding protein YP_001667935.1 1923024 D 76869 CDS YP_001667936.1 167032705 5869477 1923784..1925025 1 NC_010322.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3706 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 1925025 5869477 PputGB1_1697 Pseudomonas putida GB-1 LolC/E family lipoprotein releasing system, transmembrane protein YP_001667936.1 1923784 D 76869 CDS YP_001667937.1 167032706 5869478 complement(1925066..1926418) 1 NC_010322.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3705 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 1926418 5869478 PputGB1_1698 Pseudomonas putida GB-1 heavy metal sensor signal transduction histidine kinase YP_001667937.1 1925066 R 76869 CDS YP_001667938.1 167032707 5869479 complement(1926415..1927095) 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3704 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator 1927095 5869479 PputGB1_1699 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001667938.1 1926415 R 76869 CDS YP_001667939.1 167032708 5869480 1927278..1927805 1 NC_010322.1 PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN3703 copper-binding protein; blue (type1) copper domain-containing protein 1927805 5869480 PputGB1_1700 Pseudomonas putida GB-1 blue (type1) copper domain-containing protein YP_001667939.1 1927278 D 76869 CDS YP_001667940.1 167032709 5869481 1927874..1928704 1 NC_010322.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1928704 queF 5869481 queF Pseudomonas putida GB-1 7-cyano-7-deazaguanine reductase YP_001667940.1 1927874 D 76869 CDS YP_001667941.1 167032710 5869482 complement(1928744..1929007) 1 NC_010322.1 KEGG: pen:PSEEN3701 hypothetical protein; hypothetical protein 1929007 5869482 PputGB1_1702 Pseudomonas putida GB-1 hypothetical protein YP_001667941.1 1928744 R 76869 CDS YP_001667942.1 167032711 5869483 complement(1929130..1929693) 1 NC_010322.1 KEGG: pen:PSEEN3700 hypothetical protein; hypothetical protein 1929693 5869483 PputGB1_1703 Pseudomonas putida GB-1 hypothetical protein YP_001667942.1 1929130 R 76869 CDS YP_001667943.1 167032712 5869484 1929894..1930601 1 NC_010322.1 PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN3699 VacJ lipoprotein; VacJ family lipoprotein 1930601 5869484 PputGB1_1704 Pseudomonas putida GB-1 VacJ family lipoprotein YP_001667943.1 1929894 D 76869 CDS YP_001667944.1 167032713 5869485 complement(1930636..1930935) 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3698 hypothetical protein; type IV pilus assembly PilZ 1930935 5869485 PputGB1_1705 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001667944.1 1930636 R 76869 CDS YP_001667945.1 167032714 5869486 1931206..1932387 1 NC_010322.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3696 response regulator; response regulator receiver modulated serine phosphatase 1932387 5869486 PputGB1_1706 Pseudomonas putida GB-1 response regulator receiver modulated serine phosphatase YP_001667945.1 1931206 D 76869 CDS YP_001667946.1 167032715 5869487 1932384..1932866 1 NC_010322.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3695 anti-anti-sigma factor; anti-sigma-factor antagonist 1932866 5869487 PputGB1_1707 Pseudomonas putida GB-1 anti-sigma-factor antagonist YP_001667946.1 1932384 D 76869 CDS YP_001667947.1 167032716 5869488 complement(1932941..1934791) 1 NC_010322.1 KEGG: pen:PSEEN3694 hypothetical protein; hypothetical protein 1934791 5869488 PputGB1_1708 Pseudomonas putida GB-1 hypothetical protein YP_001667947.1 1932941 R 76869 CDS YP_001667948.1 167032717 5869489 complement(1934889..1935815) 1 NC_010322.1 KEGG: pen:PSEEN3692 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 1935815 5869489 PputGB1_1709 Pseudomonas putida GB-1 transaldolase B YP_001667948.1 1934889 R 76869 CDS YP_001667949.1 167032718 5869490 complement(1935985..1936995) 1 NC_010322.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN3691 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 1936995 5869490 PputGB1_1710 Pseudomonas putida GB-1 tRNA-dihydrouridine synthase A YP_001667949.1 1935985 R 76869 CDS YP_001667950.1 167032719 5869491 1937095..1938237 1 NC_010322.1 PFAM: integrase family protein; KEGG: pfl:PFL_1976 site-specific recombinase, phage integrase family; integrase family protein 1938237 5869491 PputGB1_1711 Pseudomonas putida GB-1 integrase family protein YP_001667950.1 1937095 D 76869 CDS YP_001667951.1 167032720 5869492 complement(1938206..1938484) 1 NC_010322.1 KEGG: pap:PSPA7_2364 hypothetical protein; hypothetical protein 1938484 5869492 PputGB1_1712 Pseudomonas putida GB-1 hypothetical protein YP_001667951.1 1938206 R 76869 CDS YP_001667952.1 167032721 5869493 complement(1938494..1938706) 1 NC_010322.1 hypothetical protein 1938706 5869493 PputGB1_1713 Pseudomonas putida GB-1 hypothetical protein YP_001667952.1 1938494 R 76869 CDS YP_001667953.1 167032722 5869494 complement(1938717..1940027) 1 NC_010322.1 KEGG: aav:Aave_1600 hypothetical protein; hypothetical protein 1940027 5869494 PputGB1_1714 Pseudomonas putida GB-1 hypothetical protein YP_001667953.1 1938717 R 76869 CDS YP_001667954.1 167032723 5869495 complement(1940024..1940347) 1 NC_010322.1 hypothetical protein 1940347 5869495 PputGB1_1715 Pseudomonas putida GB-1 hypothetical protein YP_001667954.1 1940024 R 76869 CDS YP_001667955.1 167032724 5869496 1940392..1941090 1 NC_010322.1 KEGG: shn:Shewana3_2488 hypothetical protein; hypothetical protein 1941090 5869496 PputGB1_1716 Pseudomonas putida GB-1 hypothetical protein YP_001667955.1 1940392 D 76869 CDS YP_001667956.1 167032725 5869497 complement(1941116..1941523) 1 NC_010322.1 KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 1941523 5869497 PputGB1_1717 Pseudomonas putida GB-1 C-5 cytosine-specific DNA methylase YP_001667956.1 1941116 R 76869 CDS YP_001667957.1 167032726 5869498 1941585..1941944 1 NC_010322.1 PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein 1941944 5869498 PputGB1_1718 Pseudomonas putida GB-1 IS66 Orf2 family protein YP_001667957.1 1941585 D 76869 CDS YP_001667958.1 167032727 5869499 1941972..1943492 1 NC_010322.1 PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 1943492 5869499 PputGB1_1719 Pseudomonas putida GB-1 transposase IS66 YP_001667958.1 1941972 D 76869 CDS YP_001667959.1 167032728 5869500 complement(1943534..1944838) 1 NC_010322.1 KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 1944838 5869500 PputGB1_1720 Pseudomonas putida GB-1 C-5 cytosine-specific DNA methylase YP_001667959.1 1943534 R 76869 CDS YP_001667960.1 167032729 5869501 complement(1944892..1945503) 1 NC_010322.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: xau:Xaut_3681 exonuclease RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III 1945503 5869501 PputGB1_1721 Pseudomonas putida GB-1 exonuclease RNase T and DNA polymerase III YP_001667960.1 1944892 R 76869 CDS YP_001667961.1 167032730 5869502 complement(1945568..1947310) 1 NC_010322.1 PFAM: SMC domain protein; KEGG: pap:PSPA7_2377 hypothetical protein; SMC domain-containing protein 1947310 5869502 PputGB1_1722 Pseudomonas putida GB-1 SMC domain-containing protein YP_001667961.1 1945568 R 76869 CDS YP_001667962.1 167032731 5869503 complement(1947315..1948313) 1 NC_010322.1 KEGG: eba:ebA7041 cell division FtsK transmembrane protein; DNA segregation ATPase FtsK/SpoIIIE-like protein 1948313 5869503 PputGB1_1723 Pseudomonas putida GB-1 DNA segregation ATPase FtsK/SpoIIIE-like protein YP_001667962.1 1947315 R 76869 CDS YP_001667963.1 167032732 5869504 complement(1948323..1948523) 1 NC_010322.1 KEGG: pap:PSPA7_2379 hypothetical protein; hypothetical protein 1948523 5869504 PputGB1_1724 Pseudomonas putida GB-1 hypothetical protein YP_001667963.1 1948323 R 76869 CDS YP_001667964.1 167032733 5869505 complement(1948530..1949399) 1 NC_010322.1 KEGG: pap:PSPA7_2380 hypothetical protein; hypothetical protein 1949399 5869505 PputGB1_1725 Pseudomonas putida GB-1 hypothetical protein YP_001667964.1 1948530 R 76869 CDS YP_001667965.1 167032734 5869506 complement(1949408..1950211) 1 NC_010322.1 KEGG: pap:PSPA7_2382 hypothetical protein; hypothetical protein 1950211 5869506 PputGB1_1726 Pseudomonas putida GB-1 hypothetical protein YP_001667965.1 1949408 R 76869 CDS YP_001667966.1 167032735 5869507 complement(1950330..1950479) 1 NC_010322.1 hypothetical protein 1950479 5869507 PputGB1_1727 Pseudomonas putida GB-1 hypothetical protein YP_001667966.1 1950330 R 76869 CDS YP_001667967.1 167032736 5869508 complement(1950469..1950624) 1 NC_010322.1 hypothetical protein 1950624 5869508 PputGB1_1728 Pseudomonas putida GB-1 hypothetical protein YP_001667967.1 1950469 R 76869 CDS YP_001667968.1 167032737 5869509 complement(1950621..1950902) 1 NC_010322.1 hypothetical protein 1950902 5869509 PputGB1_1729 Pseudomonas putida GB-1 hypothetical protein YP_001667968.1 1950621 R 76869 CDS YP_001667969.1 167032738 5869510 complement(1951008..1951310) 1 NC_010322.1 hypothetical protein 1951310 5869510 PputGB1_1730 Pseudomonas putida GB-1 hypothetical protein YP_001667969.1 1951008 R 76869 CDS YP_001667970.1 167032739 5869511 complement(1951331..1951663) 1 NC_010322.1 hypothetical protein 1951663 5869511 PputGB1_1731 Pseudomonas putida GB-1 hypothetical protein YP_001667970.1 1951331 R 76869 CDS YP_001667971.1 167032740 5869512 complement(1952034..1952381) 1 NC_010322.1 KEGG: cps:CPS_1624 hypothetical protein; hypothetical protein 1952381 5869512 PputGB1_1732 Pseudomonas putida GB-1 hypothetical protein YP_001667971.1 1952034 R 76869 CDS YP_001667972.1 167032741 5869513 complement(1952392..1953060) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: yps:YPTB1790 putative prophage repressor protein; XRE family transcriptional regulator 1953060 5869513 PputGB1_1733 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001667972.1 1952392 R 76869 CDS YP_001667973.1 167032742 5869514 1953177..1953416 1 NC_010322.1 KEGG: stm:STM0898A hypothetical protein; hypothetical protein 1953416 5869514 PputGB1_1734 Pseudomonas putida GB-1 hypothetical protein YP_001667973.1 1953177 D 76869 CDS YP_001667974.1 167032743 5869515 1953419..1953727 1 NC_010322.1 KEGG: net:Neut_1482 hypothetical protein; hypothetical protein 1953727 5869515 PputGB1_1735 Pseudomonas putida GB-1 hypothetical protein YP_001667974.1 1953419 D 76869 CDS YP_001667975.1 167032744 5869516 1953731..1954642 1 NC_010322.1 PFAM: protein of unknown function DUF1376; KEGG: spq:SPAB_02260 hypothetical protein; hypothetical protein 1954642 5869516 PputGB1_1736 Pseudomonas putida GB-1 hypothetical protein YP_001667975.1 1953731 D 76869 CDS YP_001667976.1 167032745 5869517 1954599..1955171 1 NC_010322.1 KEGG: pap:PSPA7_2397 hypothetical protein; hypothetical protein 1955171 5869517 PputGB1_1737 Pseudomonas putida GB-1 hypothetical protein YP_001667976.1 1954599 D 76869 CDS YP_001667977.1 167032746 5869518 1955168..1955335 1 NC_010322.1 hypothetical protein 1955335 5869518 PputGB1_1738 Pseudomonas putida GB-1 hypothetical protein YP_001667977.1 1955168 D 76869 CDS YP_001667978.1 167032747 5869519 1955507..1955947 1 NC_010322.1 PFAM: endodeoxyribonuclease RusA; KEGG: pap:PSPA7_2398 endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 1955947 5869519 PputGB1_1739 Pseudomonas putida GB-1 endodeoxyribonuclease RusA YP_001667978.1 1955507 D 76869 CDS YP_001667979.1 167032748 5869520 1955991..1956620 1 NC_010322.1 KEGG: psb:Psyr_2805 hypothetical protein; hypothetical protein 1956620 5869520 PputGB1_1740 Pseudomonas putida GB-1 hypothetical protein YP_001667979.1 1955991 D 76869 CDS YP_001667980.1 167032749 5869521 1956693..1957604 1 NC_010322.1 KEGG: pvi:Cvib_0124 hypothetical protein; hypothetical protein 1957604 5869521 PputGB1_1741 Pseudomonas putida GB-1 hypothetical protein YP_001667980.1 1956693 D 76869 CDS YP_001667981.1 167032750 5869522 1957904..1958149 1 NC_010322.1 hypothetical protein 1958149 5869522 PputGB1_1742 Pseudomonas putida GB-1 hypothetical protein YP_001667981.1 1957904 D 76869 CDS YP_001667982.1 167032751 5869523 1958146..1958658 1 NC_010322.1 PFAM: glycoside hydrolase family 24; KEGG: pna:Pnap_3296 prophage LambdaSo, lysozyme, putative; glycoside hydrolase 1958658 5869523 PputGB1_1743 Pseudomonas putida GB-1 glycoside hydrolase YP_001667982.1 1958146 D 76869 CDS YP_001667983.1 167032752 5869524 1958655..1959104 1 NC_010322.1 PFAM: lysis protein; KEGG: pen:PSEEN4130 phage protein; lysis protein 1959104 5869524 PputGB1_1744 Pseudomonas putida GB-1 lysis protein YP_001667983.1 1958655 D 76869 CDS YP_001667984.1 167032753 5869525 1959114..1959647 1 NC_010322.1 PFAM: Terminase small subunit; KEGG: bmu:Bmul_1829 terminase small subunit; terminase small subunit 1959647 5869525 PputGB1_1745 Pseudomonas putida GB-1 terminase small subunit YP_001667984.1 1959114 D 76869 CDS YP_001667985.1 167032754 5869526 1959622..1961121 1 NC_010322.1 KEGG: ecv:APECO1_4038 putative phage terminase, large subunit; putative phage terminase large subunit 1961121 5869526 PputGB1_1746 Pseudomonas putida GB-1 putative phage terminase large subunit YP_001667985.1 1959622 D 76869 CDS YP_001667986.1 167032755 5869527 1961132..1961395 1 NC_010322.1 hypothetical protein 1961395 5869527 PputGB1_1747 Pseudomonas putida GB-1 hypothetical protein YP_001667986.1 1961132 D 76869 CDS YP_001667987.1 167032756 5869528 1961398..1963092 1 NC_010322.1 KEGG: ecv:APECO1_4041 putative tail protein; putative tail protein 1963092 5869528 PputGB1_1748 Pseudomonas putida GB-1 putative tail protein YP_001667987.1 1961398 D 76869 CDS YP_001667988.1 167032757 5869529 1963093..1963398 1 NC_010322.1 KEGG: ecv:APECO1_4042 hypothetical protein; hypothetical protein 1963398 5869529 PputGB1_1749 Pseudomonas putida GB-1 hypothetical protein YP_001667988.1 1963093 D 76869 CDS YP_001667989.1 167032758 5869530 1963395..1964096 1 NC_010322.1 KEGG: ecv:APECO1_4043 hypothetical protein; hypothetical protein 1964096 5869530 PputGB1_1750 Pseudomonas putida GB-1 hypothetical protein YP_001667989.1 1963395 D 76869 CDS YP_001667990.1 167032759 5869531 1964107..1965105 1 NC_010322.1 KEGG: ecv:APECO1_4044 hypothetical protein; hypothetical protein 1965105 5869531 PputGB1_1751 Pseudomonas putida GB-1 hypothetical protein YP_001667990.1 1964107 D 76869 CDS YP_001667991.1 167032760 5869532 1965143..1965589 1 NC_010322.1 KEGG: ecv:APECO1_4045 hypothetical protein; hypothetical protein 1965589 5869532 PputGB1_1752 Pseudomonas putida GB-1 hypothetical protein YP_001667991.1 1965143 D 76869 CDS YP_001667992.1 167032761 5869533 1965599..1966039 1 NC_010322.1 hypothetical protein 1966039 5869533 PputGB1_1753 Pseudomonas putida GB-1 hypothetical protein YP_001667992.1 1965599 D 76869 CDS YP_001667993.1 167032762 5869534 1966099..1966734 1 NC_010322.1 KEGG: ecv:APECO1_4048 hypothetical protein; hypothetical protein 1966734 5869534 PputGB1_1754 Pseudomonas putida GB-1 hypothetical protein YP_001667993.1 1966099 D 76869 CDS YP_001667994.1 167032763 5869535 1966731..1969055 1 NC_010322.1 KEGG: ecv:APECO1_4049 hypothetical protein; hypothetical protein 1969055 5869535 PputGB1_1755 Pseudomonas putida GB-1 hypothetical protein YP_001667994.1 1966731 D 76869 CDS YP_001667995.1 167032764 5869536 1969057..1969500 1 NC_010322.1 KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein 1969500 5869536 PputGB1_1756 Pseudomonas putida GB-1 hypothetical protein YP_001667995.1 1969057 D 76869 CDS YP_001667996.1 167032765 5869537 1969500..1969961 1 NC_010322.1 KEGG: pde:Pden_3769 hypothetical protein; hypothetical protein 1969961 5869537 PputGB1_1757 Pseudomonas putida GB-1 hypothetical protein YP_001667996.1 1969500 D 76869 CDS YP_001667997.1 167032766 5869538 1969964..1972390 1 NC_010322.1 KEGG: spe:Spro_3877 lytic transglycosylase catalytic; hypothetical protein 1972390 5869538 PputGB1_1758 Pseudomonas putida GB-1 hypothetical protein YP_001667997.1 1969964 D 76869 CDS YP_001667998.1 167032767 5869539 1972387..1974141 1 NC_010322.1 KEGG: spe:Spro_3876 hypothetical protein; hypothetical protein 1974141 5869539 PputGB1_1759 Pseudomonas putida GB-1 hypothetical protein YP_001667998.1 1972387 D 76869 CDS YP_001667999.1 167032768 5869540 1974141..1976708 1 NC_010322.1 KEGG: spe:Spro_3875 hypothetical protein; hypothetical protein 1976708 5869540 PputGB1_1760 Pseudomonas putida GB-1 hypothetical protein YP_001667999.1 1974141 D 76869 CDS YP_001668000.1 167032769 5869541 1976799..1979216 1 NC_010322.1 KEGG: bvi:Bcep1808_1185 parallel beta-helix repeat; hypothetical protein 1979216 5869541 PputGB1_1761 Pseudomonas putida GB-1 hypothetical protein YP_001668000.1 1976799 D 76869 CDS YP_001668001.1 167032770 5869542 complement(1979189..1981177) 1 NC_010322.1 PFAM: acyltransferase 3; KEGG: azo:azo3580 putative acyltransferase family protein; acyltransferase 3 1981177 5869542 PputGB1_1762 Pseudomonas putida GB-1 acyltransferase 3 YP_001668001.1 1979189 R 76869 CDS YP_001668002.1 167032771 5869543 1981302..1981574 1 NC_010322.1 hypothetical protein 1981574 5869543 PputGB1_1763 Pseudomonas putida GB-1 hypothetical protein YP_001668002.1 1981302 D 76869 CDS YP_001668003.1 167032772 5869544 1981866..1982090 1 NC_010322.1 KEGG: pfl:PFL_1976 site-specific recombinase, phage integrase family; hypothetical protein 1982090 5869544 PputGB1_1764 Pseudomonas putida GB-1 hypothetical protein YP_001668003.1 1981866 D 76869 CDS YP_001668004.1 167032773 5869545 complement(1982332..1983600) 1 NC_010322.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase 1983600 5869545 PputGB1_1765 Pseudomonas putida GB-1 malate dehydrogenase YP_001668004.1 1982332 R 76869 CDS YP_001668005.1 167032774 5869546 complement(1983735..1984064) 1 NC_010322.1 KEGG: mms:mma_0878 hypothetical protein; hypothetical protein 1984064 5869546 PputGB1_1766 Pseudomonas putida GB-1 hypothetical protein YP_001668005.1 1983735 R 76869 CDS YP_001668006.1 167032775 5869547 complement(1984091..1985452) 1 NC_010322.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1985452 5869547 PputGB1_1767 Pseudomonas putida GB-1 dihydroorotase YP_001668006.1 1984091 R 76869 CDS YP_001668007.1 167032776 5869548 complement(1985449..1986705) 1 NC_010322.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1986705 5869548 PputGB1_1768 Pseudomonas putida GB-1 allantoate amidohydrolase YP_001668007.1 1985449 R 76869 CDS YP_001668008.1 167032777 5869549 complement(1986702..1987637) 1 NC_010322.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bam:Bamb_5904 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein 1987637 5869549 PputGB1_1769 Pseudomonas putida GB-1 dihydroorotate dehydrogenase family protein YP_001668008.1 1986702 R 76869 CDS YP_001668009.1 167032778 5869550 complement(1987637..1988467) 1 NC_010322.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_5905 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1988467 5869550 PputGB1_1770 Pseudomonas putida GB-1 oxidoreductase FAD-binding subunit YP_001668009.1 1987637 R 76869 CDS YP_001668010.1 167032779 5869551 complement(1988655..1989893) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3798 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1989893 5869551 PputGB1_1771 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668010.1 1988655 R 76869 CDS YP_001668011.1 167032780 5869552 complement(1990055..1990909) 1 NC_010322.1 KEGG: azo:azo3511 conserved hypothetical secreted protein; hypothetical protein 1990909 5869552 PputGB1_1772 Pseudomonas putida GB-1 hypothetical protein YP_001668011.1 1990055 R 76869 CDS YP_001668012.1 167032781 5869553 1991215..1992090 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: acr:Acry_2262 helix-turn-helix domain protein; XRE family transcriptional regulator 1992090 5869553 PputGB1_1773 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668012.1 1991215 D 76869 CDS YP_001668013.1 167032782 5869554 complement(1992349..1993218) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: pen:PSEEN3410 transcriptional regulator, AraC family; AraC family transcriptional regulator 1993218 5869554 PputGB1_1774 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668013.1 1992349 R 76869 CDS YP_001668014.1 167032783 5869555 complement(1993418..1993747) 1 NC_010322.1 hypothetical protein 1993747 5869555 PputGB1_1775 Pseudomonas putida GB-1 hypothetical protein YP_001668014.1 1993418 R 76869 CDS YP_001668015.1 167032784 5869556 complement(1993944..1994411) 1 NC_010322.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN3672 hypothetical protein; glutathione-dependent formaldehyde-activating protein 1994411 5869556 PputGB1_1776 Pseudomonas putida GB-1 glutathione-dependent formaldehyde-activating protein YP_001668015.1 1993944 R 76869 CDS YP_001668016.1 167032785 5869557 1994489..1994944 1 NC_010322.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pfl:PFL_2399 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1994944 5869557 PputGB1_1777 Pseudomonas putida GB-1 isoprenylcysteine carboxyl methyltransferase YP_001668016.1 1994489 D 76869 CDS YP_001668017.1 167032786 5869558 complement(1995009..1996529) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pae:PA0476 probable permease; cytosine/purines uracil thiamine allantoin permease 1996529 5869558 PputGB1_1778 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001668017.1 1995009 R 76869 CDS YP_001668018.1 167032787 5869559 1996824..1997858 1 NC_010322.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pap:PSPA7_4791 hypothetical protein; hypothetical protein 1997858 5869559 PputGB1_1779 Pseudomonas putida GB-1 hypothetical protein YP_001668018.1 1996824 D 76869 CDS YP_001668019.1 167032788 5869560 1997942..1998658 1 NC_010322.1 KEGG: pap:PSPA7_4792 hypothetical protein; hypothetical protein 1998658 5869560 PputGB1_1780 Pseudomonas putida GB-1 hypothetical protein YP_001668019.1 1997942 D 76869 CDS YP_001668020.1 167032789 5869561 complement(1998675..1999382) 1 NC_010322.1 PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN2539 hypothetical protein; hypothetical protein 1999382 5869561 PputGB1_1781 Pseudomonas putida GB-1 hypothetical protein YP_001668020.1 1998675 R 76869 CDS YP_001668021.1 167032790 5869562 complement(1999532..2000665) 1 NC_010322.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN2741 serine-pyruvate transaminase; class V aminotransferase 2000665 5869562 PputGB1_1782 Pseudomonas putida GB-1 class V aminotransferase YP_001668021.1 1999532 R 76869 CDS YP_001668022.1 167032791 5869563 complement(2000818..2001744) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3287 transcriptional regulator, LysR family; LysR family transcriptional regulator 2001744 5869563 PputGB1_1783 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668022.1 2000818 R 76869 CDS YP_001668023.1 167032792 5869564 2001926..2002480 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3720 transcriptional regulator, XRE family; XRE family transcriptional regulator 2002480 5869564 PputGB1_1784 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668023.1 2001926 D 76869 CDS YP_001668024.1 167032793 5869565 2002508..2003854 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2186 glutamine synthetase; glutamine synthetase 2003854 5869565 PputGB1_1785 Pseudomonas putida GB-1 glutamine synthetase YP_001668024.1 2002508 D 76869 CDS YP_001668025.1 167032794 5869566 2003927..2004700 1 NC_010322.1 PFAM: peptidase C26; KEGG: pap:PSPA7_0388 probable glutamine amidotransferase; peptidase C26 2004700 5869566 PputGB1_1786 Pseudomonas putida GB-1 peptidase C26 YP_001668025.1 2003927 D 76869 CDS YP_001668026.1 167032795 5869567 2004769..2006127 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase 2006127 5869567 PputGB1_1787 Pseudomonas putida GB-1 putative aminotransferase YP_001668026.1 2004769 D 76869 CDS YP_001668027.1 167032796 5869568 2006308..2006862 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3720 transcriptional regulator, XRE family; XRE family transcriptional regulator 2006862 5869568 PputGB1_1788 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668027.1 2006308 D 76869 CDS YP_001668028.1 167032797 5869569 2006974..2007513 1 NC_010322.1 PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pap:PSPA7_2621 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 2007513 5869569 PputGB1_1789 Pseudomonas putida GB-1 ProQ activator of osmoprotectant transporter ProP YP_001668028.1 2006974 D 76869 CDS YP_001668029.1 167032798 5869570 2007681..2008892 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1814 major facilitator family transporter; major facilitator superfamily transporter 2008892 5869570 PputGB1_1790 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668029.1 2007681 D 76869 CDS YP_001668030.1 167032799 5869571 complement(2008896..2009456) 1 NC_010322.1 PFAM: protein of unknown function DUF925; KEGG: pen:PSEEN3673 hypothetical protein; hypothetical protein 2009456 5869571 PputGB1_1791 Pseudomonas putida GB-1 hypothetical protein YP_001668030.1 2008896 R 76869 CDS YP_001668031.1 167032800 5869572 complement(2009557..2010636) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA4375 AraC family transcriptional regulator; AraC family transcriptional regulator 2010636 5869572 PputGB1_1792 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668031.1 2009557 R 76869 CDS YP_001668032.1 167032801 5869573 complement(2010832..2011842) 1 NC_010322.1 PFAM: aminoglycoside phosphotransferase; KEGG: eca:ECA4376 hypothetical protein; aminoglycoside phosphotransferase 2011842 5869573 PputGB1_1793 Pseudomonas putida GB-1 aminoglycoside phosphotransferase YP_001668032.1 2010832 R 76869 CDS YP_001668033.1 167032802 5869574 2012072..2012845 1 NC_010322.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2012845 5869574 PputGB1_1794 Pseudomonas putida GB-1 3-ketoacyl-ACP reductase YP_001668033.1 2012072 D 76869 CDS YP_001668034.1 167032803 5869575 2012887..2014437 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: vei:Veis_0667 amino acid permease-associated region; amino acid permease-associated protein 2014437 5869575 PputGB1_1795 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668034.1 2012887 D 76869 CDS YP_001668035.1 167032804 5869576 2014449..2015759 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: bmu:Bmul_5426 aminotransferase class-III; class III aminotransferase 2015759 5869576 PputGB1_1796 Pseudomonas putida GB-1 class III aminotransferase YP_001668035.1 2014449 D 76869 CDS YP_001668036.1 167032805 5869577 complement(2015829..2017754) 1 NC_010322.1 PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_1396 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2017754 5869577 PputGB1_1797 Pseudomonas putida GB-1 AMP-dependent synthetase and ligase YP_001668036.1 2015829 R 76869 CDS YP_001668037.1 167032806 5869578 2018049..2019143 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pst:PSPTO_2590 bacterial luciferase family protein; luciferase family protein 2019143 5869578 PputGB1_1798 Pseudomonas putida GB-1 luciferase family protein YP_001668037.1 2018049 D 76869 CDS YP_001668038.1 167032807 5869579 2019162..2019818 1 NC_010322.1 hypothetical protein 2019818 5869579 PputGB1_1799 Pseudomonas putida GB-1 hypothetical protein YP_001668038.1 2019162 D 76869 CDS YP_001668039.1 167032808 5869580 complement(2019876..2021183) 1 NC_010322.1 KEGG: pae:PA4155 hypothetical protein; hypothetical protein 2021183 5869580 PputGB1_1800 Pseudomonas putida GB-1 hypothetical protein YP_001668039.1 2019876 R 76869 CDS YP_001668040.1 167032809 5869581 complement(2021241..2023325) 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_3620 ferric vibriobactin receptor, putative; TonB-dependent receptor 2023325 5869581 PputGB1_1801 Pseudomonas putida GB-1 TonB-dependent receptor YP_001668040.1 2021241 R 76869 CDS YP_001668041.1 167032810 5869582 2023507..2024364 1 NC_010322.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pau:PA14_10190 putative transcriptional regulator; IclR family transcriptional regulator 2024364 5869582 PputGB1_1802 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001668041.1 2023507 D 76869 CDS YP_001668042.1 167032811 5869583 complement(2024374..2025177) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3622 ferric enterobactin transport protein FepC; ABC transporter-like protein 2025177 5869583 PputGB1_1803 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668042.1 2024374 R 76869 CDS YP_001668043.1 167032812 5869584 2025288..2026187 1 NC_010322.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 2026187 5869584 PputGB1_1804 Pseudomonas putida GB-1 iron-enterobactin transporter periplasmic binding protein YP_001668043.1 2025288 D 76869 CDS YP_001668044.1 167032813 5869585 2026190..2027194 1 NC_010322.1 PFAM: transport system permease protein; KEGG: pfl:PFL_3624 ferric vibriobactin ABC transporter permease protein; transport system permease 2027194 5869585 PputGB1_1805 Pseudomonas putida GB-1 transport system permease YP_001668044.1 2026190 D 76869 CDS YP_001668045.1 167032814 5869586 2027182..2028234 1 NC_010322.1 PFAM: transport system permease protein; KEGG: pau:PA14_10140 ferric enterobactin transport protein FepG; transport system permease 2028234 5869586 PputGB1_1806 Pseudomonas putida GB-1 transport system permease YP_001668045.1 2027182 D 76869 CDS YP_001668046.1 167032815 5869587 2028487..2028969 1 NC_010322.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 2028969 5869587 PputGB1_1807 Pseudomonas putida GB-1 formate dehydrogenase subunit gamma YP_001668046.1 2028487 D 76869 CDS YP_001668047.1 167032816 5869588 2028963..2030522 1 NC_010322.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pen:PSEEN1827 formate dehydrogenase, beta subunit; NADH dehydrogenase (quinone) 2030522 5869588 PputGB1_1808 Pseudomonas putida GB-1 NADH dehydrogenase (quinone) YP_001668047.1 2028963 D 76869 CDS YP_001668048.1 167032817 5869589 2030519..2033401 1 NC_010322.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1828 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2033401 5869589 PputGB1_1809 Pseudomonas putida GB-1 formate dehydrogenase subunit alpha YP_001668048.1 2030519 D 76869 CDS YP_001668049.1 167032818 5869590 2033398..2033601 1 NC_010322.1 KEGG: pen:PSEEN1829 formate dehydrogenase, delta subunit; formate dehydrogenase subunit delta 2033601 5869590 PputGB1_1810 Pseudomonas putida GB-1 formate dehydrogenase subunit delta YP_001668049.1 2033398 D 76869 CDS YP_001668050.1 167032819 5869591 complement(2033762..2034625) 1 NC_010322.1 PFAM: UspA domain protein; KEGG: pae:PA1789 hypothetical protein; UspA domain-containing protein 2034625 5869591 PputGB1_1811 Pseudomonas putida GB-1 UspA domain-containing protein YP_001668050.1 2033762 R 76869 CDS YP_001668051.1 167032820 5869592 2034778..2035395 1 NC_010322.1 PFAM: tRNA--hydroxylase; KEGG: pen:PSEEN3516 hypothetical protein; tRNA--hydroxylase 2035395 5869592 PputGB1_1812 Pseudomonas putida GB-1 tRNA--hydroxylase YP_001668051.1 2034778 D 76869 CDS YP_001668052.1 167032821 5869593 complement(2035418..2035738) 1 NC_010322.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3515 hypothetical protein; hypothetical protein 2035738 5869593 PputGB1_1813 Pseudomonas putida GB-1 hypothetical protein YP_001668052.1 2035418 R 76869 CDS YP_001668053.1 167032822 5869594 2035867..2036130 1 NC_010322.1 KEGG: pen:PSEEN3514 hypothetical protein; hypothetical protein 2036130 5869594 PputGB1_1814 Pseudomonas putida GB-1 hypothetical protein YP_001668053.1 2035867 D 76869 CDS YP_001668054.1 167032823 5869595 complement(2036149..2036631) 1 NC_010322.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN3512 lipoprotein; water stress/hypersensitive response domain-containing protein 2036631 5869595 PputGB1_1815 Pseudomonas putida GB-1 water stress/hypersensitive response domain-containing protein YP_001668054.1 2036149 R 76869 CDS YP_001668055.1 167032824 5869596 2036767..2037891 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily; anti-FecI sigma factor FecR 2037891 5869596 PputGB1_1816 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001668055.1 2036767 D 76869 CDS YP_001668056.1 167032825 5869597 2038039..2040465 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3154 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2040465 5869597 PputGB1_1817 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668056.1 2038039 D 76869 CDS YP_001668057.1 167032826 5869598 complement(2040506..2041396) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3511 transcriptional regulator, LysR family; LysR family transcriptional regulator 2041396 5869598 PputGB1_1818 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668057.1 2040506 R 76869 CDS YP_001668058.1 167032827 5869599 2041499..2042578 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3510 periplasmic polyamine-binding protein; extracellular solute-binding protein 2042578 5869599 PputGB1_1819 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668058.1 2041499 D 76869 CDS YP_001668059.1 167032828 5869600 2042604..2043569 1 NC_010322.1 catalyzes the formation of putrescine from agmatine; agmatinase 2043569 5869600 PputGB1_1820 Pseudomonas putida GB-1 agmatinase YP_001668059.1 2042604 D 76869 CDS YP_001668060.1 167032829 5869601 2043797..2044114 1 NC_010322.1 KEGG: pen:PSEEN3508 hypothetical protein; hypothetical protein 2044114 5869601 PputGB1_1821 Pseudomonas putida GB-1 hypothetical protein YP_001668060.1 2043797 D 76869 CDS YP_001668061.1 167032830 5869602 2044137..2045288 1 NC_010322.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pen:PSEEN3507 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2045288 5869602 PputGB1_1822 Pseudomonas putida GB-1 glucose sorbosone dehydrogenase YP_001668061.1 2044137 D 76869 CDS YP_001668062.1 167032831 5869603 2045389..2046495 1 NC_010322.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN3506 AFG1-like ATPase; AFG1 family ATPase 2046495 5869603 PputGB1_1823 Pseudomonas putida GB-1 AFG1 family ATPase YP_001668062.1 2045389 D 76869 CDS YP_001668063.1 167032832 5869604 complement(2046528..2047526) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pst:PSPTO_3264 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2047526 5869604 PputGB1_1824 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001668063.1 2046528 R 76869 CDS YP_001668064.1 167032833 5869605 complement(2047602..2048039) 1 NC_010322.1 KEGG: pen:PSEEN3504 hypothetical protein; hypothetical protein 2048039 5869605 PputGB1_1825 Pseudomonas putida GB-1 hypothetical protein YP_001668064.1 2047602 R 76869 CDS YP_001668065.1 167032834 5869606 complement(2048039..2048467) 1 NC_010322.1 PFAM: protein of unknown function DUF411; KEGG: pen:PSEEN3503 hypothetical protein; hypothetical protein 2048467 5869606 PputGB1_1826 Pseudomonas putida GB-1 hypothetical protein YP_001668065.1 2048039 R 76869 CDS YP_001668066.1 167032835 5869607 complement(2048482..2049357) 1 NC_010322.1 PFAM: copper resistance B precursor; KEGG: pen:PSEEN3502 copper resistance protein B; copper resistance B 2049357 5869607 PputGB1_1827 Pseudomonas putida GB-1 copper resistance B YP_001668066.1 2048482 R 76869 CDS YP_001668067.1 167032836 5869608 complement(2049350..2051050) 1 NC_010322.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN3501 copper resistance protein A precursor; CopA family copper resistance protein 2051050 5869608 PputGB1_1828 Pseudomonas putida GB-1 CopA family copper resistance protein YP_001668067.1 2049350 R 76869 CDS YP_001668068.1 167032837 5869609 complement(2051129..2052463) 1 NC_010322.1 PFAM: peptidase U32; KEGG: pen:PSEEN3499 protease, U32 family; peptidase U32 2052463 5869609 PputGB1_1829 Pseudomonas putida GB-1 peptidase U32 YP_001668068.1 2051129 R 76869 CDS YP_001668069.1 167032838 5869610 2052597..2053661 1 NC_010322.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3498 hypothetical protein; hypothetical protein 2053661 5869610 PputGB1_1830 Pseudomonas putida GB-1 hypothetical protein YP_001668069.1 2052597 D 76869 CDS YP_001668070.1 167032839 5869611 2053674..2055122 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; transcriptional regulator 2055122 5869611 PputGB1_1831 Pseudomonas putida GB-1 transcriptional regulator YP_001668070.1 2053674 D 76869 CDS YP_001668071.1 167032840 5869612 complement(2055110..2055925) 1 NC_010322.1 KEGG: pen:PSEEN2896 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2055925 5869612 PputGB1_1832 Pseudomonas putida GB-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001668071.1 2055110 R 76869 CDS YP_001668072.1 167032841 5869613 complement(2056072..2056899) 1 NC_010322.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 2056899 5869613 PputGB1_1833 Pseudomonas putida GB-1 phosphonoacetaldehyde hydrolase YP_001668072.1 2056072 R 76869 CDS YP_001668073.1 167032842 5869614 complement(2056934..2058040) 1 NC_010322.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 2058040 5869614 PputGB1_1834 Pseudomonas putida GB-1 2-aminoethylphosphonate--pyruvate transaminase YP_001668073.1 2056934 R 76869 CDS YP_001668074.1 167032843 5869615 2058153..2059016 1 NC_010322.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3552 transcriptional regulator, LysR family; LysR family transcriptional regulator 2059016 5869615 PputGB1_1835 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668074.1 2058153 D 76869 CDS YP_001668075.1 167032844 5869616 2059055..2060077 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3551 transcriptional regulator, AraC family; AraC family transcriptional regulator 2060077 5869616 PputGB1_1836 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668075.1 2059055 D 76869 CDS YP_001668076.1 167032845 5869617 2060153..2064637 1 NC_010322.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3550 hypothetical protein; hypothetical protein 2064637 5869617 PputGB1_1837 Pseudomonas putida GB-1 hypothetical protein YP_001668076.1 2060153 D 76869 CDS YP_001668077.1 167032846 5869618 2064707..2069233 1 NC_010322.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3550 hypothetical protein; hypothetical protein 2069233 5869618 PputGB1_1838 Pseudomonas putida GB-1 hypothetical protein YP_001668077.1 2064707 D 76869 CDS YP_001668078.1 167032847 5869619 2069358..2071004 1 NC_010322.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3549 acetyl-coA synthetase/AMP-(fatty) acid ligase FadDx; AMP-dependent synthetase and ligase 2071004 5869619 PputGB1_1839 Pseudomonas putida GB-1 AMP-dependent synthetase and ligase YP_001668078.1 2069358 D 76869 CDS YP_001668079.1 167032848 5869620 2071017..2071784 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN3548 3-hydroxyacyl-CoA dehydrogenase FadB2x; short-chain dehydrogenase/reductase SDR 2071784 5869620 PputGB1_1840 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668079.1 2071017 D 76869 CDS YP_001668080.1 167032849 5869621 2071796..2072989 1 NC_010322.1 KEGG: pen:PSEEN3547 acetyl-CoA acetyltransferase with thiolase domain FadAx; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; acetyl-CoA acetyltransferase 2072989 5869621 PputGB1_1841 Pseudomonas putida GB-1 acetyl-CoA acetyltransferase YP_001668080.1 2071796 D 76869 CDS YP_001668081.1 167032850 5869622 2072998..2074125 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3546 acyl-CoA dehydrogenase protein FadFx; acyl-CoA dehydrogenase domain-containing protein 2074125 5869622 PputGB1_1842 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001668081.1 2072998 D 76869 CDS YP_001668082.1 167032851 5869623 2074139..2074912 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN3545 enoyl-CoA hydratase, FadB1x; enoyl-CoA hydratase/isomerase 2074912 5869623 PputGB1_1843 Pseudomonas putida GB-1 enoyl-CoA hydratase/isomerase YP_001668082.1 2074139 D 76869 CDS YP_001668083.1 167032852 5869624 2075247..2075651 1 NC_010322.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN3543 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 2075651 5869624 PputGB1_1844 Pseudomonas putida GB-1 TraR/DksA family transcriptional regulator YP_001668083.1 2075247 D 76869 CDS YP_001668084.1 167032853 5869625 2075829..2076023 1 NC_010322.1 KEGG: pen:PSEEN3541 hypothetical protein; hypothetical protein 2076023 5869625 PputGB1_1845 Pseudomonas putida GB-1 hypothetical protein YP_001668084.1 2075829 D 76869 CDS YP_001668085.1 167032854 5869626 2076354..2076839 1 NC_010322.1 KEGG: pen:PSEEN3540 hypothetical protein; hypothetical protein 2076839 5869626 PputGB1_1846 Pseudomonas putida GB-1 hypothetical protein YP_001668085.1 2076354 D 76869 CDS YP_001668086.1 167032855 5869627 2076836..2077048 1 NC_010322.1 KEGG: pen:PSEEN3539 hypothetical protein; hypothetical protein 2077048 5869627 PputGB1_1847 Pseudomonas putida GB-1 hypothetical protein YP_001668086.1 2076836 D 76869 CDS YP_001668087.1 167032856 5869628 complement(2077061..2077426) 1 NC_010322.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 2077426 5869628 PputGB1_1848 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit G YP_001668087.1 2077061 R 76869 CDS YP_001668088.1 167032857 5869629 complement(2077423..2077701) 1 NC_010322.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 2077701 5869629 PputGB1_1849 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit F YP_001668088.1 2077423 R 76869 CDS YP_001668089.1 167032858 5869630 complement(2077698..2078186) 1 NC_010322.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 2078186 5869630 PputGB1_1850 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit E YP_001668089.1 2077698 R 76869 CDS YP_001668090.1 167032859 5869631 complement(2078183..2079862) 1 NC_010322.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2079862 5869631 PputGB1_1851 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit D YP_001668090.1 2078183 R 76869 CDS YP_001668091.1 167032860 5869632 complement(2079859..2080203) 1 NC_010322.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2080203 5869632 PputGB1_1852 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit C YP_001668091.1 2079859 R 76869 CDS YP_001668092.1 167032861 5869633 complement(2080203..2083118) 1 NC_010322.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 2083118 5869633 PputGB1_1853 Pseudomonas putida GB-1 putative monovalent cation/H+ antiporter subunit A YP_001668092.1 2080203 R 76869 CDS YP_001668093.1 167032862 5869634 complement(2083268..2084218) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3532 hypothetical protein; hypothetical protein 2084218 5869634 PputGB1_1854 Pseudomonas putida GB-1 hypothetical protein YP_001668093.1 2083268 R 76869 CDS YP_001668094.1 167032863 5869635 2084334..2084867 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN3531 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2084867 5869635 PputGB1_1855 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668094.1 2084334 D 76869 CDS YP_001668095.1 167032864 5869636 complement(2084917..2085465) 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_5042 isochorismatase hydrolase; isochorismatase hydrolase 2085465 5869636 PputGB1_1856 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001668095.1 2084917 R 76869 CDS YP_001668096.1 167032865 5869637 2085524..2086540 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5041 transcriptional regulator, AraC family; AraC family transcriptional regulator 2086540 5869637 PputGB1_1857 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668096.1 2085524 D 76869 CDS YP_001668097.1 167032866 5869638 2086622..2087002 1 NC_010322.1 KEGG: pen:PSEEN3529 hypothetical protein; hypothetical protein 2087002 5869638 PputGB1_1858 Pseudomonas putida GB-1 hypothetical protein YP_001668097.1 2086622 D 76869 CDS YP_001668098.1 167032867 5869639 complement(2086981..2087751) 1 NC_010322.1 KEGG: pmy:Pmen_2291 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 2087751 5869639 PputGB1_1859 Pseudomonas putida GB-1 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001668098.1 2086981 R 76869 CDS YP_001668099.1 167032868 5869640 complement(2087735..2088853) 1 NC_010322.1 KEGG: pmy:Pmen_2290 hypothetical protein; hypothetical protein 2088853 5869640 PputGB1_1860 Pseudomonas putida GB-1 hypothetical protein YP_001668099.1 2087735 R 76869 CDS YP_001668100.1 167032869 5869641 2089040..2090848 1 NC_010322.1 PFAM: creatinase; peptidase M24; KEGG: pen:PSEEN3528 peptidase, M24 family protein; peptidase M24 2090848 5869641 PputGB1_1861 Pseudomonas putida GB-1 peptidase M24 YP_001668100.1 2089040 D 76869 CDS YP_001668101.1 167032870 5869642 complement(2090888..2091169) 1 NC_010322.1 KEGG: pen:PSEEN3527 lipoprotein; lipoprotein 2091169 5869642 PputGB1_1862 Pseudomonas putida GB-1 lipoprotein YP_001668101.1 2090888 R 76869 CDS YP_001668102.1 167032871 5869643 complement(2091360..2092247) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3524 transporter, EamA family; hypothetical protein 2092247 5869643 PputGB1_1863 Pseudomonas putida GB-1 hypothetical protein YP_001668102.1 2091360 R 76869 CDS YP_001668103.1 167032872 5869649 2098084..2099892 1 NC_010322.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1831 ABC efflux transporter, permease/ATP-binding protein; ABC transporter 2099892 5869649 PputGB1_1864 Pseudomonas putida GB-1 ABC transporter YP_001668103.1 2098084 D 76869 CDS YP_001668104.1 167032873 5869650 complement(2099969..2101174) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily transporter 2101174 5869650 PputGB1_1865 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668104.1 2099969 R 76869 CDS YP_001668105.1 167032874 5869651 complement(2101289..2101927) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_2706 transcriptional regulator, TetR family; TetR family transcriptional regulator 2101927 5869651 PputGB1_1866 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668105.1 2101289 R 76869 CDS YP_001668106.1 167032875 5869652 complement(2102039..2103481) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bmu:Bmul_6019 permease for cytosine/purines uracil thiamine allantoin; cytosine/purines uracil thiamine allantoin permease 2103481 5869652 PputGB1_1867 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001668106.1 2102039 R 76869 CDS YP_001668107.1 167032876 5869653 complement(2103540..2104724) 1 NC_010322.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:RL3344 putative dehydrogenase; iron-containing alcohol dehydrogenase 2104724 5869653 PputGB1_1868 Pseudomonas putida GB-1 iron-containing alcohol dehydrogenase YP_001668107.1 2103540 R 76869 CDS YP_001668108.1 167032877 5869654 complement(2104737..2106227) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: bpd:BURPS668_A0734 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase 2106227 5869654 PputGB1_1869 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668108.1 2104737 R 76869 CDS YP_001668109.1 167032878 5869655 2106627..2108861 1 NC_010322.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2108861 5869655 PputGB1_1870 Pseudomonas putida GB-1 outer membrane receptor FepA YP_001668109.1 2106627 D 76869 CDS YP_001668110.1 167032879 5869656 2108917..2109204 1 NC_010322.1 KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 2109204 5869656 PputGB1_1871 Pseudomonas putida GB-1 putative iron uptake protein YP_001668110.1 2108917 D 76869 CDS YP_001668111.1 167032880 5869657 2109201..2110721 1 NC_010322.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 2110721 5869657 PputGB1_1872 Pseudomonas putida GB-1 PepSY-associated TM helix domain-containing protein YP_001668111.1 2109201 D 76869 CDS YP_001668112.1 167032881 5869658 2110724..2111056 1 NC_010322.1 KEGG: bbr:BB3603 putative iron uptake protein; hypothetical protein 2111056 5869658 PputGB1_1873 Pseudomonas putida GB-1 hypothetical protein YP_001668112.1 2110724 D 76869 CDS YP_001668113.1 167032882 5869659 2111168..2111707 1 NC_010322.1 PFAM: Phosphoglycerate mutase; KEGG: pfl:PFL_2248 phosphoglycerate mutase family protein; phosphoglycerate mutase 2111707 5869659 PputGB1_1874 Pseudomonas putida GB-1 phosphoglycerate mutase YP_001668113.1 2111168 D 76869 CDS YP_001668114.1 167032883 5869660 complement(2111711..2112496) 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein 2112496 5869660 PputGB1_1875 Pseudomonas putida GB-1 hypothetical protein YP_001668114.1 2111711 R 76869 CDS YP_001668115.1 167032884 5869661 complement(2112607..2113200) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pfl:PFL_0806 DNA-binding protein; XRE family transcriptional regulator 2113200 5869661 PputGB1_1876 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668115.1 2112607 R 76869 CDS YP_001668116.1 167032885 5869662 2113316..2114452 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0805 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2114452 5869662 PputGB1_1877 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668116.1 2113316 D 76869 CDS YP_001668117.1 167032886 5869663 2114464..2114841 1 NC_010322.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN1840 endoribonuclease; endoribonuclease L-PSP 2114841 5869663 PputGB1_1878 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001668117.1 2114464 D 76869 CDS YP_001668118.1 167032887 5869664 2114936..2116009 1 NC_010322.1 KEGG: pfl:PFL_0803 hypothetical protein; hypothetical protein 2116009 5869664 PputGB1_1879 Pseudomonas putida GB-1 hypothetical protein YP_001668118.1 2114936 D 76869 CDS YP_001668119.1 167032888 5869665 complement(2116162..2118048) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1841 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 2118048 5869665 PputGB1_1880 Pseudomonas putida GB-1 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001668119.1 2116162 R 76869 CDS YP_001668120.1 167032889 5869666 complement(2118191..2119069) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1842 transcriptional regulator, LysR family; LysR family transcriptional regulator 2119069 5869666 PputGB1_1881 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668120.1 2118191 R 76869 CDS YP_001668121.1 167032890 5869667 2119171..2119599 1 NC_010322.1 PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN1843 hypothetical protein; transmembrane pair domain-containing protein 2119599 5869667 PputGB1_1882 Pseudomonas putida GB-1 transmembrane pair domain-containing protein YP_001668121.1 2119171 D 76869 CDS YP_001668122.1 167032891 5869668 complement(2119636..2120682) 1 NC_010322.1 KEGG: pen:PSEEN1844 hypothetical protein; hypothetical protein 2120682 5869668 PputGB1_1883 Pseudomonas putida GB-1 hypothetical protein YP_001668122.1 2119636 R 76869 CDS YP_001668123.1 167032892 5869669 complement(2120815..2121483) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1847 transcriptional regulator, GntR family; GntR family transcriptional regulator 2121483 5869669 PputGB1_1884 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668123.1 2120815 R 76869 CDS YP_001668124.1 167032893 5869670 complement(2121500..2122204) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1848 transcriptional regulator, GntR family; GntR family transcriptional regulator 2122204 5869670 PputGB1_1885 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668124.1 2121500 R 76869 CDS YP_001668125.1 167032894 5869671 complement(2122249..2123562) 1 NC_010322.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 2123562 5869671 PputGB1_1886 Pseudomonas putida GB-1 C4-dicarboxylate transporter DctA YP_001668125.1 2122249 R 76869 CDS YP_001668126.1 167032895 5869672 complement(2123790..2124104) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1850 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2124104 5869672 PputGB1_1887 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668126.1 2123790 R 76869 CDS YP_001668127.1 167032896 5869673 2124371..2125936 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN1851 aerotaxis receptor Aer-1; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 2125936 5869673 PputGB1_1888 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001668127.1 2124371 D 76869 CDS YP_001668128.1 167032897 5869674 2125950..2127638 1 NC_010322.1 KEGG: pen:PSEEN1852 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2127638 5869674 PputGB1_1889 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001668128.1 2125950 D 76869 CDS YP_001668129.1 167032898 5869675 complement(2127646..2127984) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1854 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2127984 5869675 PputGB1_1890 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668129.1 2127646 R 76869 CDS YP_001668130.1 167032899 5869676 complement(2128195..2129259) 1 NC_010322.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2129259 5869676 PputGB1_1891 Pseudomonas putida GB-1 ornithine cyclodeaminase YP_001668130.1 2128195 R 76869 CDS YP_001668131.1 167032900 5869677 complement(2129425..2131173) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psp:PSPPH_1680 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 2131173 5869677 PputGB1_1892 Pseudomonas putida GB-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001668131.1 2129425 R 76869 CDS YP_001668132.1 167032901 5869678 2131397..2132491 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_1681 ABC transporter, ATP-binding protein; ABC transporter-like protein 2132491 5869678 PputGB1_1893 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668132.1 2131397 D 76869 CDS YP_001668133.1 167032902 5869679 2132491..2133588 1 NC_010322.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1682 ABC transporter, ATP-binding protein; ABC transporter-like protein 2133588 5869679 PputGB1_1894 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668133.1 2132491 D 76869 CDS YP_001668134.1 167032903 5869680 2133585..2134451 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2044 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2134451 5869680 PputGB1_1895 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668134.1 2133585 D 76869 CDS YP_001668135.1 167032904 5869681 2134455..2135255 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3632 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2135255 5869681 PputGB1_1896 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668135.1 2134455 D 76869 CDS YP_001668136.1 167032905 5869682 2135268..2135540 1 NC_010322.1 KEGG: pmy:Pmen_2046 small integral membrane protein-like protein; small integral membrane protein-like protein 2135540 5869682 PputGB1_1897 Pseudomonas putida GB-1 small integral membrane protein-like protein YP_001668136.1 2135268 D 76869 CDS YP_001668137.1 167032906 5869683 2135580..2137319 1 NC_010322.1 KEGG: pfo:Pfl_3630 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2137319 5869683 PputGB1_1898 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668137.1 2135580 D 76869 CDS YP_001668138.1 167032907 5869684 complement(2137416..2138288) 1 NC_010322.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2138288 5869684 PputGB1_1899 Pseudomonas putida GB-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001668138.1 2137416 R 76869 CDS YP_001668139.1 167032908 5869689 2139236..2139535 1 NC_010322.1 KEGG: pen:PSEEN1866 hypothetical protein; hypothetical protein 2139535 5869689 PputGB1_1900 Pseudomonas putida GB-1 hypothetical protein YP_001668139.1 2139236 D 76869 CDS YP_001668140.1 167032909 5869690 2139784..2141097 1 NC_010322.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2141097 tig 5869690 tig Pseudomonas putida GB-1 trigger factor YP_001668140.1 2139784 D 76869 CDS YP_001668141.1 167032910 5869691 2141189..2141830 1 NC_010322.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2141830 clpP 5869691 clpP Pseudomonas putida GB-1 ATP-dependent Clp protease proteolytic subunit YP_001668141.1 2141189 D 76869 CDS YP_001668142.1 167032911 5869692 2141939..2143222 1 NC_010322.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2143222 clpX 5869692 clpX Pseudomonas putida GB-1 ATP-dependent protease ATP-binding subunit ClpX YP_001668142.1 2141939 D 76869 CDS YP_001668143.1 167032912 5869693 2143387..2145783 1 NC_010322.1 KEGG: pen:PSEEN1870 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2145783 5869693 PputGB1_1904 Pseudomonas putida GB-1 ATP-dependent protease La YP_001668143.1 2143387 D 76869 CDS YP_001668144.1 167032913 5869694 2145936..2146208 1 NC_010322.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN1871 DNA-binding protein HU-beta; histone family protein DNA-binding protein 2146208 5869694 PputGB1_1905 Pseudomonas putida GB-1 histone family protein DNA-binding protein YP_001668144.1 2145936 D 76869 CDS YP_001668145.1 167032914 5869695 2146390..2148261 1 NC_010322.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN1872 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 2148261 5869695 PputGB1_1906 Pseudomonas putida GB-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001668145.1 2146390 D 76869 CDS YP_001668146.1 167032915 5869696 complement(2148344..2149384) 1 NC_010322.1 PFAM: Patatin; KEGG: pen:PSEEN1873 patatin-like phospholipase; patatin 2149384 5869696 PputGB1_1907 Pseudomonas putida GB-1 patatin YP_001668146.1 2148344 R 76869 CDS YP_001668147.1 167032916 5869697 2149563..2149841 1 NC_010322.1 KEGG: pen:PSEEN1874 lipoprotein; lipoprotein 2149841 5869697 PputGB1_1908 Pseudomonas putida GB-1 lipoprotein YP_001668147.1 2149563 D 76869 CDS YP_001668148.1 167032917 5869698 2149856..2150635 1 NC_010322.1 PFAM: CHAD domain containing protein; KEGG: pen:PSEEN1875 hypothetical protein; CHAD domain-containing protein 2150635 5869698 PputGB1_1909 Pseudomonas putida GB-1 CHAD domain-containing protein YP_001668148.1 2149856 D 76869 CDS YP_001668149.1 167032918 5869699 2150713..2151510 1 NC_010322.1 KEGG: pen:PSEEN1876 acyl-CoA thioesterase II; acyl-CoA thioesterase II 2151510 5869699 PputGB1_1910 Pseudomonas putida GB-1 acyl-CoA thioesterase II YP_001668149.1 2150713 D 76869 CDS YP_001668150.1 167032919 5869700 complement(2151547..2151915) 1 NC_010322.1 KEGG: pen:PSEEN1877 hypothetical protein; hypothetical protein 2151915 5869700 PputGB1_1911 Pseudomonas putida GB-1 hypothetical protein YP_001668150.1 2151547 R 76869 CDS YP_001668151.1 167032920 5869701 complement(2151991..2153469) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1878 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2153469 5869701 PputGB1_1912 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001668151.1 2151991 R 76869 CDS YP_001668152.1 167032921 5869702 complement(2153564..2154358) 1 NC_010322.1 PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1879 deoxyribonuclease, TatD family; TatD-related deoxyribonuclease 2154358 5869702 PputGB1_1913 Pseudomonas putida GB-1 TatD-related deoxyribonuclease YP_001668152.1 2153564 R 76869 CDS YP_001668153.1 167032922 5869703 2154516..2155922 1 NC_010322.1 PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN1880 lytic transglycosylase; lytic transglycosylase 2155922 5869703 PputGB1_1914 Pseudomonas putida GB-1 lytic transglycosylase YP_001668153.1 2154516 D 76869 CDS YP_001668154.1 167032923 5869704 2156036..2156473 1 NC_010322.1 PFAM: DoxX family protein; KEGG: pen:PSEEN1881 hypothetical protein; DoxX family protein 2156473 5869704 PputGB1_1915 Pseudomonas putida GB-1 DoxX family protein YP_001668154.1 2156036 D 76869 CDS YP_001668155.1 167032924 5869705 2156698..2157006 1 NC_010322.1 KEGG: pen:PSEEN1882 hypothetical protein; hypothetical protein 2157006 5869705 PputGB1_1916 Pseudomonas putida GB-1 hypothetical protein YP_001668155.1 2156698 D 76869 CDS YP_001668156.1 167032925 5869706 2157018..2157488 1 NC_010322.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2157488 greB 5869706 greB Pseudomonas putida GB-1 transcription elongation factor GreB YP_001668156.1 2157018 D 76869 CDS YP_001668157.1 167032926 5869707 complement(2157536..2160043) 1 NC_010322.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN1884 hypothetical protein; hypothetical protein 2160043 5869707 PputGB1_1918 Pseudomonas putida GB-1 hypothetical protein YP_001668157.1 2157536 R 76869 CDS YP_001668158.1 167032927 5869708 complement(2160043..2160726) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1885 ABC transporter, ATP-binding protein; ABC transporter-like protein 2160726 5869708 PputGB1_1919 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668158.1 2160043 R 76869 CDS YP_001668159.1 167032928 5869709 2160743..2161342 1 NC_010322.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pen:PSEEN1886 arylesterase; arylesterase 2161342 5869709 PputGB1_1920 Pseudomonas putida GB-1 arylesterase YP_001668159.1 2160743 D 76869 CDS YP_001668160.1 167032929 5869710 2161401..2161691 1 NC_010322.1 KEGG: pen:PSEEN1887 hypothetical protein; hypothetical protein 2161691 5869710 PputGB1_1921 Pseudomonas putida GB-1 hypothetical protein YP_001668160.1 2161401 D 76869 CDS YP_001668161.1 167032930 5869711 2161805..2162782 1 NC_010322.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN1888 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2162782 5869711 PputGB1_1922 Pseudomonas putida GB-1 ErfK/YbiS/YcfS/YnhG family protein YP_001668161.1 2161805 D 76869 CDS YP_001668162.1 167032931 5869712 complement(2162915..2163166) 1 NC_010322.1 KEGG: pen:PSEEN1889 outer membrane lipoprotein OprI; outer membrane lipoprotein OprI 2163166 5869712 PputGB1_1923 Pseudomonas putida GB-1 outer membrane lipoprotein OprI YP_001668162.1 2162915 R 76869 CDS YP_001668163.1 167032932 5869713 2163673..2163954 1 NC_010322.1 KEGG: pen:PSEEN1890 hypothetical protein; hypothetical protein 2163954 5869713 PputGB1_1924 Pseudomonas putida GB-1 hypothetical protein YP_001668163.1 2163673 D 76869 CDS YP_001668164.1 167032933 5869714 complement(2164013..2165089) 1 NC_010322.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2165089 5869714 PputGB1_1925 Pseudomonas putida GB-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001668164.1 2164013 R 76869 CDS YP_001668165.1 167032934 5869715 2165322..2166269 1 NC_010322.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2166269 5869715 PputGB1_1926 Pseudomonas putida GB-1 2-dehydropantoate 2-reductase YP_001668165.1 2165322 D 76869 CDS YP_001668166.1 167032935 5869716 2166406..2166903 1 NC_010322.1 PFAM: UspA domain protein; KEGG: pen:PSEEN1894 hypothetical protein; UspA domain-containing protein 2166903 5869716 PputGB1_1927 Pseudomonas putida GB-1 UspA domain-containing protein YP_001668166.1 2166406 D 76869 CDS YP_001668167.1 167032936 5869717 2167033..2168007 1 NC_010322.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2168007 cysB 5869717 cysB Pseudomonas putida GB-1 transcriptional regulator CysB YP_001668167.1 2167033 D 76869 CDS YP_001668168.1 167032937 5869718 complement(2168046..2168780) 1 NC_010322.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 2168780 5869718 PputGB1_1929 Pseudomonas putida GB-1 phosphoadenosine phosphosulfate reductase YP_001668168.1 2168046 R 76869 CDS YP_001668169.1 167032938 5869719 complement(2168860..2170203) 1 NC_010322.1 KEGG: pen:PSEEN1897 para-aminodeoxychorismate synthase subunit I PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; para-aminobenzoate synthase subunit I 2170203 5869719 PputGB1_1930 Pseudomonas putida GB-1 para-aminobenzoate synthase subunit I YP_001668169.1 2168860 R 76869 CDS YP_001668170.1 167032939 5869720 complement(2170358..2171338) 1 NC_010322.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: pen:PSEEN1898 hypothetical protein; alpha-L-glutamate ligase-like protein 2171338 5869720 PputGB1_1931 Pseudomonas putida GB-1 alpha-L-glutamate ligase-like protein YP_001668170.1 2170358 R 76869 CDS YP_001668171.1 167032940 5869721 complement(2171338..2172873) 1 NC_010322.1 KEGG: pen:PSEEN1899 hypothetical protein; hypothetical protein 2172873 5869721 PputGB1_1932 Pseudomonas putida GB-1 hypothetical protein YP_001668171.1 2171338 R 76869 CDS YP_001668172.1 167032941 5869722 complement(2172879..2173415) 1 NC_010322.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN1900 hypothetical protein; hypothetical protein 2173415 5869722 PputGB1_1933 Pseudomonas putida GB-1 hypothetical protein YP_001668172.1 2172879 R 76869 CDS YP_001668173.1 167032942 5869723 2173722..2174438 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1901 transcriptional regulator, GntR family; GntR family transcriptional regulator 2174438 5869723 PputGB1_1934 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668173.1 2173722 D 76869 CDS YP_001668174.1 167032943 5869724 2174441..2175325 1 NC_010322.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2175325 prpB 5869724 prpB Pseudomonas putida GB-1 2-methylisocitrate lyase YP_001668174.1 2174441 D 76869 CDS YP_001668175.1 167032944 5869725 2175386..2176513 1 NC_010322.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2176513 5869725 PputGB1_1936 Pseudomonas putida GB-1 methylcitrate synthase YP_001668175.1 2175386 D 76869 CDS YP_001668176.1 167032945 5869726 2176683..2179271 1 NC_010322.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2179271 5869726 PputGB1_1937 Pseudomonas putida GB-1 aconitate hydratase YP_001668176.1 2176683 D 76869 CDS YP_001668177.1 167032946 5869727 2179336..2180526 1 NC_010322.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; AcnD-accessory protein PrpF 2180526 5869727 PputGB1_1938 Pseudomonas putida GB-1 AcnD-accessory protein PrpF YP_001668177.1 2179336 D 76869 CDS YP_001668178.1 167032947 5869728 2180599..2182083 1 NC_010322.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2182083 prpD 5869728 prpD Pseudomonas putida GB-1 2-methylcitrate dehydratase YP_001668178.1 2180599 D 76869 CDS YP_001668179.1 167032948 5869729 complement(2182156..2184714) 1 NC_010322.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2184714 5869729 PputGB1_1940 Pseudomonas putida GB-1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001668179.1 2182156 R 76869 CDS YP_001668180.1 167032949 5869730 2185135..2185650 1 NC_010322.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN1909 hypothetical protein; hypothetical protein 2185650 5869730 PputGB1_1941 Pseudomonas putida GB-1 hypothetical protein YP_001668180.1 2185135 D 76869 CDS YP_001668181.1 167032950 5869731 complement(2185719..2186075) 1 NC_010322.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pen:PSEEN1910 6-pyruvoyl tetrahydrobiopterin synthase SscR; queuosine biosynthesis protein QueD 2186075 5869731 PputGB1_1942 Pseudomonas putida GB-1 queuosine biosynthesis protein QueD YP_001668181.1 2185719 R 76869 CDS YP_001668182.1 167032951 5869732 complement(2186399..2187049) 1 NC_010322.1 hypothetical protein 2187049 5869732 PputGB1_1943 Pseudomonas putida GB-1 hypothetical protein YP_001668182.1 2186399 R 76869 CDS YP_001668183.1 167032952 5869733 complement(2187130..2188209) 1 NC_010322.1 KEGG: pen:PSEEN1911 hypothetical protein; hypothetical protein 2188209 5869733 PputGB1_1944 Pseudomonas putida GB-1 hypothetical protein YP_001668183.1 2187130 R 76869 CDS YP_001668184.1 167032953 5869734 2188374..2188682 1 NC_010322.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1912 hypothetical protein; peptidase 2188682 5869734 PputGB1_1945 Pseudomonas putida GB-1 peptidase YP_001668184.1 2188374 D 76869 CDS YP_001668185.1 167032954 5869735 2188682..2188996 1 NC_010322.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1913 hypothetical protein; peptidase 2188996 5869735 PputGB1_1946 Pseudomonas putida GB-1 peptidase YP_001668185.1 2188682 D 76869 CDS YP_001668186.1 167032955 5869736 2188997..2189665 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1914 DNA-binding response regulator; two component transcriptional regulator 2189665 5869736 PputGB1_1947 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668186.1 2188997 D 76869 CDS YP_001668187.1 167032956 5869737 2189662..2190981 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN1915 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2190981 5869737 PputGB1_1948 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668187.1 2189662 D 76869 CDS YP_001668188.1 167032957 5869738 2191235..2192389 1 NC_010322.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: pen:PSEEN1916 hypothetical protein; hypothetical protein 2192389 5869738 PputGB1_1949 Pseudomonas putida GB-1 hypothetical protein YP_001668188.1 2191235 D 76869 CDS YP_001668189.1 167032958 5869739 complement(2192363..2193229) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1917 transcriptional regulator, LysR family; LysR family transcriptional regulator 2193229 5869739 PputGB1_1950 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668189.1 2192363 R 76869 CDS YP_001668190.1 167032959 5869740 2193409..2195298 1 NC_010322.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN1919 acetyl-CoA synthetase; AMP-dependent synthetase and ligase 2195298 5869740 PputGB1_1951 Pseudomonas putida GB-1 AMP-dependent synthetase and ligase YP_001668190.1 2193409 D 76869 CDS YP_001668191.1 167032960 5869741 complement(2195364..2196434) 1 NC_010322.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN1920 ATPase, AFG1 family; AFG1 family ATPase 2196434 5869741 PputGB1_1952 Pseudomonas putida GB-1 AFG1 family ATPase YP_001668191.1 2195364 R 76869 CDS YP_001668192.1 167032961 5869742 complement(2196562..2196804) 1 NC_010322.1 KEGG: pfo:Pfl_3131 hypothetical protein; hypothetical protein 2196804 5869742 PputGB1_1953 Pseudomonas putida GB-1 hypothetical protein YP_001668192.1 2196562 R 76869 CDS YP_001668193.1 167032962 5869744 complement(2197289..2199676) 1 NC_010322.1 KEGG: pen:PSEEN3403 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2199676 5869744 PputGB1_1954 Pseudomonas putida GB-1 multi-sensor hybrid histidine kinase YP_001668193.1 2197289 R 76869 CDS YP_001668194.1 167032963 5869745 complement(2199690..2200151) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3402 response regulator; response regulator receiver protein 2200151 5869745 PputGB1_1955 Pseudomonas putida GB-1 response regulator receiver protein YP_001668194.1 2199690 R 76869 CDS YP_001668195.1 167032964 5869746 complement(2200167..2202413) 1 NC_010322.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: pen:PSEEN3401 bacteriophytochrome 1; GAF sensor signal transduction histidine kinase 2202413 5869746 PputGB1_1956 Pseudomonas putida GB-1 GAF sensor signal transduction histidine kinase YP_001668195.1 2200167 R 76869 CDS YP_001668196.1 167032965 5869747 2202681..2203208 1 NC_010322.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3400 type 1 pili protein CsuB; spore coat U domain-containing protein 2203208 5869747 PputGB1_1957 Pseudomonas putida GB-1 spore coat U domain-containing protein YP_001668196.1 2202681 D 76869 CDS YP_001668197.1 167032966 5869748 2203239..2203775 1 NC_010322.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3399 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2203775 5869748 PputGB1_1958 Pseudomonas putida GB-1 spore coat U domain-containing protein YP_001668197.1 2203239 D 76869 CDS YP_001668198.1 167032967 5869749 2203794..2204327 1 NC_010322.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3398 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2204327 5869749 PputGB1_1959 Pseudomonas putida GB-1 spore coat U domain-containing protein YP_001668198.1 2203794 D 76869 CDS YP_001668199.1 167032968 5869750 2204331..2204834 1 NC_010322.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3397 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2204834 5869750 PputGB1_1960 Pseudomonas putida GB-1 spore coat U domain-containing protein YP_001668199.1 2204331 D 76869 CDS YP_001668200.1 167032969 5869751 2204875..2205651 1 NC_010322.1 KEGG: pen:PSEEN3396 type 1 pili usher pathway chaperone CsuC; type 1 pili usher pathway chaperone CsuC 2205651 5869751 PputGB1_1961 Pseudomonas putida GB-1 type 1 pili usher pathway chaperone CsuC YP_001668200.1 2204875 D 76869 CDS YP_001668201.1 167032970 5869752 2205760..2208057 1 NC_010322.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pen:PSEEN3395 type 1 pili usher protein CsuD; fimbrial biogenesis outer membrane usher protein 2208057 5869752 PputGB1_1962 Pseudomonas putida GB-1 fimbrial biogenesis outer membrane usher protein YP_001668201.1 2205760 D 76869 CDS YP_001668202.1 167032971 5869753 2208054..2209025 1 NC_010322.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3394 type 1 pili protein CsuE; spore coat U domain-containing protein 2209025 5869753 PputGB1_1963 Pseudomonas putida GB-1 spore coat U domain-containing protein YP_001668202.1 2208054 D 76869 CDS YP_001668203.1 167032972 5869754 complement(2209092..2210240) 1 NC_010322.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: pen:PSEEN3393 zinc-dependent carboxypeptidase (M14 family); peptidase M14 carboxypeptidase A 2210240 5869754 PputGB1_1964 Pseudomonas putida GB-1 peptidase M14 carboxypeptidase A YP_001668203.1 2209092 R 76869 CDS YP_001668204.1 167032973 5869755 2210512..2211474 1 NC_010322.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: pae:PA2595 putative sulfonate transport system substrate-binding protein; aliphatic sulfonates ABC transporter substrate-binding protein 2211474 5869755 PputGB1_1965 Pseudomonas putida GB-1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001668204.1 2210512 D 76869 CDS YP_001668205.1 167032974 5869756 2211489..2212451 1 NC_010322.1 KEGG: pae:PA2594 putative sulfonate transport system substrate-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2212451 5869756 PputGB1_1966 Pseudomonas putida GB-1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001668205.1 2211489 D 76869 CDS YP_001668206.1 167032975 5869757 complement(2212474..2213247) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psa:PST_1310 AraC protein; AraC family transcriptional regulator 2213247 5869757 PputGB1_1967 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668206.1 2212474 R 76869 CDS YP_001668207.1 167032976 5869758 complement(2213284..2214516) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2124 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2214516 5869758 PputGB1_1968 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668207.1 2213284 R 76869 CDS YP_001668208.1 167032977 5869759 complement(2214657..2214887) 1 NC_010322.1 hypothetical protein 2214887 5869759 PputGB1_1969 Pseudomonas putida GB-1 hypothetical protein YP_001668208.1 2214657 R 76869 CDS YP_001668209.1 167032978 5869760 complement(2214880..2215662) 1 NC_010322.1 PFAM: VacJ family lipoprotein; KEGG: mag:amb0433 surface lipoprotein; VacJ family lipoprotein 2215662 5869760 PputGB1_1970 Pseudomonas putida GB-1 VacJ family lipoprotein YP_001668209.1 2214880 R 76869 CDS YP_001668210.1 167032979 5869761 2215839..2216537 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_4997 DNA-binding response regulator; two component transcriptional regulator 2216537 5869761 PputGB1_1971 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668210.1 2215839 D 76869 CDS YP_001668211.1 167032980 5869762 2216534..2217889 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4996 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2217889 5869762 PputGB1_1972 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668211.1 2216534 D 76869 CDS YP_001668212.1 167032981 5869763 complement(2217890..2218354) 1 NC_010322.1 PFAM: protein of unknown function DUF1348; KEGG: sit:TM1040_2246 protein of unknown function DUF1348; hypothetical protein 2218354 5869763 PputGB1_1973 Pseudomonas putida GB-1 hypothetical protein YP_001668212.1 2217890 R 76869 CDS YP_001668213.1 167032982 5869764 2218555..2219028 1 NC_010322.1 KEGG: pfl:PFL_3034 hypothetical protein; hypothetical protein 2219028 5869764 PputGB1_1974 Pseudomonas putida GB-1 hypothetical protein YP_001668213.1 2218555 D 76869 CDS YP_001668214.1 167032983 5869765 complement(2219109..2219912) 1 NC_010322.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 2219912 dkgB 5869765 dkgB Pseudomonas putida GB-1 2,5-diketo-D-gluconate reductase B YP_001668214.1 2219109 R 76869 CDS YP_001668215.1 167032984 5869766 2220117..2224298 1 NC_010322.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 2224298 5869766 PputGB1_1976 Pseudomonas putida GB-1 hypothetical protein YP_001668215.1 2220117 D 76869 CDS YP_001668216.1 167032985 5869767 complement(2224345..2224839) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN3408 hypothetical protein; hypothetical protein 2224839 5869767 PputGB1_1977 Pseudomonas putida GB-1 hypothetical protein YP_001668216.1 2224345 R 76869 CDS YP_001668217.1 167032986 5869768 complement(2224823..2226475) 1 NC_010322.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN3407 ferredoxin-nitrite reductase; sulfite reductase (ferredoxin) 2226475 5869768 PputGB1_1978 Pseudomonas putida GB-1 sulfite reductase (ferredoxin) YP_001668217.1 2224823 R 76869 CDS YP_001668218.1 167032987 5869769 2226689..2227765 1 NC_010322.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 2227765 5869769 PputGB1_1979 Pseudomonas putida GB-1 periplasmic binding protein/LacI transcriptional regulator YP_001668218.1 2226689 D 76869 CDS YP_001668219.1 167032988 5869770 2227851..2227964 1 NC_010322.1 KEGG: pen:PSEEN3404 hypothetical protein; hypothetical protein 2227964 5869770 PputGB1_1980 Pseudomonas putida GB-1 hypothetical protein YP_001668219.1 2227851 D 76869 CDS YP_001668220.1 167032989 5869771 complement(2228034..2228252) 1 NC_010322.1 KEGG: pen:PSEEN2042 hypothetical protein; hypothetical protein 2228252 5869771 PputGB1_1981 Pseudomonas putida GB-1 hypothetical protein YP_001668220.1 2228034 R 76869 CDS YP_001668221.1 167032990 5869772 complement(2228423..2232130) 1 NC_010322.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2232130 metH 5869772 metH Pseudomonas putida GB-1 B12-dependent methionine synthase YP_001668221.1 2228423 R 76869 CDS YP_001668222.1 167032991 5869773 2232314..2234614 1 NC_010322.1 PFAM: fatty acid cistrans isomerase; KEGG: pen:PSEEN3381 esterified fatty acid cis/trans isomerase; fatty acid cistrans isomerase 2234614 5869773 PputGB1_1983 Pseudomonas putida GB-1 fatty acid cistrans isomerase YP_001668222.1 2232314 D 76869 CDS YP_001668223.1 167032992 5869774 2234722..2235756 1 NC_010322.1 PFAM: acyltransferase 3; KEGG: pen:PSEEN3380 acetyltransferase Act; acyltransferase 3 2235756 5869774 PputGB1_1984 Pseudomonas putida GB-1 acyltransferase 3 YP_001668223.1 2234722 D 76869 CDS YP_001668224.1 167032993 5869775 2235815..2236399 1 NC_010322.1 TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: pen:PSEEN3379 hypothetical protein; IscR-regulated protein YhgI 2236399 5869775 PputGB1_1985 Pseudomonas putida GB-1 IscR-regulated protein YhgI YP_001668224.1 2235815 D 76869 CDS YP_001668225.1 167032994 5869776 2236607..2237215 1 NC_010322.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN3378 hypothetical protein; electron transport protein SCO1/SenC 2237215 5869776 PputGB1_1986 Pseudomonas putida GB-1 electron transport protein SCO1/SenC YP_001668225.1 2236607 D 76869 CDS YP_001668226.1 167032995 5869777 2237216..2237698 1 NC_010322.1 PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN3377 hypothetical protein; hypothetical protein 2237698 5869777 PputGB1_1987 Pseudomonas putida GB-1 hypothetical protein YP_001668226.1 2237216 D 76869 CDS YP_001668227.1 167032996 5869778 complement(2237746..2237973) 1 NC_010322.1 KEGG: pen:PSEEN3376 hypothetical protein; hypothetical protein 2237973 5869778 PputGB1_1988 Pseudomonas putida GB-1 hypothetical protein YP_001668227.1 2237746 R 76869 CDS YP_001668228.1 167032997 5869779 complement(2238046..2238879) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3375 transcriptional regulator, AraC family; AraC family transcriptional regulator 2238879 5869779 PputGB1_1989 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668228.1 2238046 R 76869 CDS YP_001668229.1 167032998 5869780 complement(2238876..2239190) 1 NC_010322.1 PFAM: branched-chain amino acid transport; KEGG: pen:PSEEN3374 hypothetical protein; branched-chain amino acid transport 2239190 5869780 PputGB1_1990 Pseudomonas putida GB-1 branched-chain amino acid transport YP_001668229.1 2238876 R 76869 CDS YP_001668230.1 167032999 5869781 complement(2239187..2239879) 1 NC_010322.1 PFAM: AzlC family protein; KEGG: pen:PSEEN3373 branched-chain amino acid transport protein, AzlC; AzlC family protein 2239879 5869781 PputGB1_1991 Pseudomonas putida GB-1 AzlC family protein YP_001668230.1 2239187 R 76869 CDS YP_001668231.1 167033000 5869782 complement(2239991..2240677) 1 NC_010322.1 KEGG: pen:PSEEN3372 hypothetical protein; hypothetical protein 2240677 5869782 PputGB1_1992 Pseudomonas putida GB-1 hypothetical protein YP_001668231.1 2239991 R 76869 CDS YP_001668232.1 167033001 5869783 complement(2240825..2241907) 1 NC_010322.1 KEGG: pen:PSEEN3371 hypothetical protein; hypothetical protein 2241907 5869783 PputGB1_1993 Pseudomonas putida GB-1 hypothetical protein YP_001668232.1 2240825 R 76869 CDS YP_001668233.1 167033002 5869784 complement(2241946..2242572) 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3370 transporter, LysE family; lysine exporter protein LysE/YggA 2242572 5869784 PputGB1_1994 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668233.1 2241946 R 76869 CDS YP_001668234.1 167033003 5869785 complement(2242575..2243363) 1 NC_010322.1 PFAM: Protein of unknown function YqcI/YcgG; KEGG: pen:PSEEN3369 hypothetical protein; hypothetical protein 2243363 5869785 PputGB1_1995 Pseudomonas putida GB-1 hypothetical protein YP_001668234.1 2242575 R 76869 CDS YP_001668235.1 167033004 5869786 2243524..2244444 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3368 transcriptional regulator, LysR family; LysR family transcriptional regulator 2244444 5869786 PputGB1_1996 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668235.1 2243524 D 76869 CDS YP_001668236.1 167033005 5869787 complement(2244425..2245321) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3367 transcriptional regulator, LysR family; LysR family transcriptional regulator 2245321 5869787 PputGB1_1997 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668236.1 2244425 R 76869 CDS YP_001668237.1 167033006 5869788 2245441..2246631 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3366 transporter, MFS family; major facilitator superfamily transporter 2246631 5869788 PputGB1_1998 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668237.1 2245441 D 76869 CDS YP_001668238.1 167033007 5869789 2246698..2249058 1 NC_010322.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95oC; DNA polymerase II 2249058 5869789 PputGB1_1999 Pseudomonas putida GB-1 DNA polymerase II YP_001668238.1 2246698 D 76869 CDS YP_001668239.1 167033008 5869790 2249138..2253634 1 NC_010322.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein 2253634 5869790 PputGB1_2000 Pseudomonas putida GB-1 hypothetical protein YP_001668239.1 2249138 D 76869 CDS YP_001668240.1 167033009 5869791 2253865..2254416 1 NC_010322.1 KEGG: pen:PSEEN3357 hypothetical protein; hypothetical protein 2254416 5869791 PputGB1_2001 Pseudomonas putida GB-1 hypothetical protein YP_001668240.1 2253865 D 76869 CDS YP_001668241.1 167033010 5869792 2254591..2255031 1 NC_010322.1 KEGG: pen:PSEEN3356 hypothetical protein; hypothetical protein 2255031 5869792 PputGB1_2002 Pseudomonas putida GB-1 hypothetical protein YP_001668241.1 2254591 D 76869 CDS YP_001668242.1 167033011 5869793 2255105..2255938 1 NC_010322.1 PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3355 hypothetical protein; hypothetical protein 2255938 5869793 PputGB1_2003 Pseudomonas putida GB-1 hypothetical protein YP_001668242.1 2255105 D 76869 CDS YP_001668243.1 167033012 5869795 complement(2256659..2257141) 1 NC_010322.1 PFAM: DoxX family protein; KEGG: pen:PSEEN3339 hypothetical protein; DoxX family protein 2257141 5869795 PputGB1_2006 Pseudomonas putida GB-1 DoxX family protein YP_001668243.1 2256659 R 76869 CDS YP_001668244.1 167033013 5869796 complement(2257250..2258536) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2402 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2258536 5869796 PputGB1_2007 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668244.1 2257250 R 76869 CDS YP_001668245.1 167033014 5869797 complement(2258533..2259273) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2403 two-component response regulator; two component transcriptional regulator 2259273 5869797 PputGB1_2008 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668245.1 2258533 R 76869 CDS YP_001668246.1 167033015 5869798 2259495..2259770 1 NC_010322.1 KEGG: pen:PSEEN2405 hypothetical protein; hypothetical protein 2259770 5869798 PputGB1_2009 Pseudomonas putida GB-1 hypothetical protein YP_001668246.1 2259495 D 76869 CDS YP_001668247.1 167033016 5869799 2259760..2260296 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2406 thioredoxin; redoxin domain-containing protein 2260296 5869799 PputGB1_2010 Pseudomonas putida GB-1 redoxin domain-containing protein YP_001668247.1 2259760 D 76869 CDS YP_001668248.1 167033017 5869800 complement(2260314..2261078) 1 NC_010322.1 KEGG: pen:PSEEN2117 hypothetical protein; hypothetical protein 2261078 5869800 PputGB1_2011 Pseudomonas putida GB-1 hypothetical protein YP_001668248.1 2260314 R 76869 CDS YP_001668249.1 167033018 5869801 complement(2261143..2262420) 1 NC_010322.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 2262420 5869801 PputGB1_2012 Pseudomonas putida GB-1 O-acetylhomoserine aminocarboxypropyltransferase YP_001668249.1 2261143 R 76869 CDS YP_001668250.1 167033019 5869802 2262629..2262793 1 NC_010322.1 KEGG: pst:PSPTO_2036 lipoprotein, putative; hypothetical protein 2262793 5869802 PputGB1_2013 Pseudomonas putida GB-1 hypothetical protein YP_001668250.1 2262629 D 76869 CDS YP_001668251.1 167033020 5869803 complement(2262814..2263902) 1 NC_010322.1 hypothetical protein 2263902 5869803 PputGB1_2014 Pseudomonas putida GB-1 hypothetical protein YP_001668251.1 2262814 R 76869 CDS YP_001668252.1 167033021 5869804 complement(2263978..2264985) 1 NC_010322.1 PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase; 5'-nucleotidase 2264985 5869804 PputGB1_2015 Pseudomonas putida GB-1 5'-nucleotidase YP_001668252.1 2263978 R 76869 CDS YP_001668253.1 167033022 5869805 complement(2265044..2265313) 1 NC_010322.1 hypothetical protein 2265313 5869805 PputGB1_2016 Pseudomonas putida GB-1 hypothetical protein YP_001668253.1 2265044 R 76869 CDS YP_001668254.1 167033023 5869806 2265673..2266158 1 NC_010322.1 hypothetical protein 2266158 5869806 PputGB1_2017 Pseudomonas putida GB-1 hypothetical protein YP_001668254.1 2265673 D 76869 CDS YP_001668255.1 167033024 5869807 complement(2266208..2266699) 1 NC_010322.1 PFAM: protein of unknown function DUF1543; KEGG: pfl:PFL_2512 hypothetical protein; hypothetical protein 2266699 5869807 PputGB1_2018 Pseudomonas putida GB-1 hypothetical protein YP_001668255.1 2266208 R 76869 CDS YP_001668256.1 167033025 5869808 complement(2266737..2267627) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hne:HNE_1372 transcriptional regulator, LysR family; LysR family transcriptional regulator 2267627 5869808 PputGB1_2019 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668256.1 2266737 R 76869 CDS YP_001668257.1 167033026 5869809 2267722..2268897 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1505 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2268897 5869809 PputGB1_2020 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668257.1 2267722 D 76869 CDS YP_001668258.1 167033027 5869810 complement(2269069..2269692) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: asa:ASA_2515 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2269692 5869810 PputGB1_2021 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001668258.1 2269069 R 76869 CDS YP_001668259.1 167033028 5869811 2269983..2270690 1 NC_010322.1 KEGG: pen:PSEEN2128 hypothetical protein; hypothetical protein 2270690 5869811 PputGB1_2022 Pseudomonas putida GB-1 hypothetical protein YP_001668259.1 2269983 D 76869 CDS YP_001668260.1 167033029 5869812 2270817..2271737 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2271737 5869812 PputGB1_2023 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668260.1 2270817 D 76869 CDS YP_001668261.1 167033030 5869813 2271911..2272687 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3053 oxidoreductase; short-chain dehydrogenase/reductase SDR 2272687 5869813 PputGB1_2024 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668261.1 2271911 D 76869 CDS YP_001668262.1 167033031 5869814 complement(2272739..2273674) 1 NC_010322.1 PFAM: cyclase family protein; KEGG: pap:PSPA7_0926 cyclase family protein; cyclase family protein 2273674 5869814 PputGB1_2025 Pseudomonas putida GB-1 cyclase family protein YP_001668262.1 2272739 R 76869 CDS YP_001668263.1 167033032 5869815 complement(2273773..2274315) 1 NC_010322.1 KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein 2274315 5869815 PputGB1_2026 Pseudomonas putida GB-1 transcriptional factor-like protein YP_001668263.1 2273773 R 76869 CDS YP_001668264.1 167033033 5869816 complement(2274422..2275408) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_2437 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 2275408 5869816 PputGB1_2027 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001668264.1 2274422 R 76869 CDS YP_001668265.1 167033034 5869817 complement(2275566..2275973) 1 NC_010322.1 KEGG: reh:H16_A1692 hypothetical protein; hypothetical protein 2275973 5869817 PputGB1_2028 Pseudomonas putida GB-1 hypothetical protein YP_001668265.1 2275566 R 76869 CDS YP_001668266.1 167033035 5869818 complement(2275995..2276792) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_3522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2276792 5869818 PputGB1_2029 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668266.1 2275995 R 76869 CDS YP_001668267.1 167033036 5869819 complement(2276879..2277790) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3524 transcriptional regulator, LysR family; LysR family transcriptional regulator 2277790 5869819 PputGB1_2030 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668267.1 2276879 R 76869 CDS YP_001668268.1 167033037 5869820 2277909..2278919 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: bch:Bcen2424_6070 aldo/keto reductase; pyridoxal 4-dehydrogenase 2278919 5869820 PputGB1_2031 Pseudomonas putida GB-1 pyridoxal 4-dehydrogenase YP_001668268.1 2277909 D 76869 CDS YP_001668269.1 167033038 5869821 complement(2278966..2279874) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3898 transcriptional regulator, LysR family; LysR family transcriptional regulator 2279874 5869821 PputGB1_2032 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668269.1 2278966 R 76869 CDS YP_001668270.1 167033039 5869822 2280029..2281333 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_4138 metabolite-proton symporter; major facilitator superfamily transporter 2281333 5869822 PputGB1_2033 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668270.1 2280029 D 76869 CDS YP_001668271.1 167033040 5869823 2281364..2282605 1 NC_010322.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2282605 5869823 PputGB1_2034 Pseudomonas putida GB-1 allantoate amidohydrolase YP_001668271.1 2281364 D 76869 CDS YP_001668272.1 167033041 5869824 2282605..2283627 1 NC_010322.1 PFAM: histone deacetylase superfamily; KEGG: pfo:Pfl_3895 histone deacetylase superfamily; histone deacetylase superfamily protein 2283627 5869824 PputGB1_2035 Pseudomonas putida GB-1 histone deacetylase superfamily protein YP_001668272.1 2282605 D 76869 CDS YP_001668273.1 167033042 5869825 complement(2283977..2285713) 1 NC_010322.1 PFAM: S-type Pyocin domain protein; KEGG: pst:PSPTO_1035 colicin/pyosin nuclease family protein; S-type pyocin domain-containing protein 2285713 5869825 PputGB1_2036 Pseudomonas putida GB-1 S-type pyocin domain-containing protein YP_001668273.1 2283977 R 76869 CDS YP_001668274.1 167033043 5869826 complement(2285921..2287345) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2394 transcriptional regulator, GntR family; transcriptional regulator 2287345 5869826 PputGB1_2037 Pseudomonas putida GB-1 transcriptional regulator YP_001668274.1 2285921 R 76869 CDS YP_001668275.1 167033044 5869827 2287671..2289083 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN2395 gamma-aminobutyrate permease GabP-like; amino acid permease-associated protein 2289083 5869827 PputGB1_2038 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668275.1 2287671 D 76869 CDS YP_001668276.1 167033045 5869828 complement(2289087..2289287) 1 NC_010322.1 hypothetical protein 2289287 5869828 PputGB1_2039 Pseudomonas putida GB-1 hypothetical protein YP_001668276.1 2289087 R 76869 CDS YP_001668277.1 167033046 5869829 complement(2289353..2290201) 1 NC_010322.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2290201 5869829 PputGB1_2040 Pseudomonas putida GB-1 shikimate 5-dehydrogenase YP_001668277.1 2289353 R 76869 CDS YP_001668278.1 167033047 5869830 complement(2290198..2290647) 1 NC_010322.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2290647 5869830 PputGB1_2041 Pseudomonas putida GB-1 3-dehydroquinate dehydratase YP_001668278.1 2290198 R 76869 CDS YP_001668279.1 167033048 5869831 2290854..2292107 1 NC_010322.1 PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein 2292107 5869831 PputGB1_2042 Pseudomonas putida GB-1 outer membrane efflux protein YP_001668279.1 2290854 D 76869 CDS YP_001668280.1 167033049 5869832 2292100..2293314 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit 2293314 5869832 PputGB1_2043 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001668280.1 2292100 D 76869 CDS YP_001668281.1 167033050 5869833 2293331..2296477 1 NC_010322.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein 2296477 5869833 PputGB1_2044 Pseudomonas putida GB-1 CzcA family heavy metal efflux protein YP_001668281.1 2293331 D 76869 CDS YP_001668282.1 167033051 5869834 complement(2296594..2297931) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3801 major facilitator family transporter; major facilitator superfamily transporter 2297931 5869834 PputGB1_2045 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668282.1 2296594 R 76869 CDS YP_001668283.1 167033052 5869835 complement(2298083..2298841) 1 NC_010322.1 KEGG: pfl:PFL_3586 hypothetical protein; hypothetical protein 2298841 5869835 PputGB1_2046 Pseudomonas putida GB-1 hypothetical protein YP_001668283.1 2298083 R 76869 CDS YP_001668284.1 167033053 5869836 complement(2298995..2301145) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2377 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2301145 5869836 PputGB1_2047 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668284.1 2298995 R 76869 CDS YP_001668285.1 167033054 5869837 complement(2301212..2301622) 1 NC_010322.1 KEGG: pen:PSEEN2378 hypothetical protein; hypothetical protein 2301622 5869837 PputGB1_2048 Pseudomonas putida GB-1 hypothetical protein YP_001668285.1 2301212 R 76869 CDS YP_001668286.1 167033055 5869838 complement(2301738..2302514) 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pfl:PFL_0481 ParA family protein; cobyrinic acid ac-diamide synthase 2302514 5869838 PputGB1_2049 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001668286.1 2301738 R 76869 CDS YP_001668287.1 167033056 5869839 complement(2302619..2304190) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3185 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2304190 5869839 PputGB1_2050 Pseudomonas putida GB-1 diguanylate cyclase YP_001668287.1 2302619 R 76869 CDS YP_001668288.1 167033057 5869840 complement(2304249..2304728) 1 NC_010322.1 KEGG: pen:PSEEN3184 hypothetical protein; hypothetical protein 2304728 5869840 PputGB1_2051 Pseudomonas putida GB-1 hypothetical protein YP_001668288.1 2304249 R 76869 CDS YP_001668289.1 167033058 5869841 2304845..2305357 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_3098 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2305357 5869841 PputGB1_2052 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001668289.1 2304845 D 76869 CDS YP_001668290.1 167033059 5869842 2305480..2305803 1 NC_010322.1 KEGG: pin:Ping_1187 hypothetical protein; hypothetical protein 2305803 5869842 PputGB1_2053 Pseudomonas putida GB-1 hypothetical protein YP_001668290.1 2305480 D 76869 CDS YP_001668291.1 167033060 5869843 complement(2305850..2307187) 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family; outer membrane porin 2307187 5869843 PputGB1_2054 Pseudomonas putida GB-1 outer membrane porin YP_001668291.1 2305850 R 76869 CDS YP_001668292.1 167033061 5869844 complement(2307184..2307618) 1 NC_010322.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: pde:Pden_2983 pseudoazurin; pseudoazurin 2307618 5869844 PputGB1_2055 Pseudomonas putida GB-1 pseudoazurin YP_001668292.1 2307184 R 76869 CDS YP_001668293.1 167033062 5869845 complement(2307636..2308424) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_3008 iron ABC transporter, ATP-binding protein; ABC transporter-like protein 2308424 5869845 PputGB1_2056 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668293.1 2307636 R 76869 CDS YP_001668294.1 167033063 5869846 complement(2308421..2309437) 1 NC_010322.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: psp:PSPPH_3007 iron ABC transporter, permease protein, putative; transport system permease 2309437 5869846 PputGB1_2057 Pseudomonas putida GB-1 transport system permease YP_001668294.1 2308421 R 76869 CDS YP_001668295.1 167033064 5869847 complement(2309437..2310447) 1 NC_010322.1 PFAM: periplasmic binding protein; KEGG: psp:PSPPH_3006 iron compound ABC transporter, periplasmic iron compound-binding protein; periplasmic binding protein 2310447 5869847 PputGB1_2058 Pseudomonas putida GB-1 periplasmic binding protein YP_001668295.1 2309437 R 76869 CDS YP_001668296.1 167033065 5869848 complement(2310786..2311952) 1 NC_010322.1 KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein 2311952 5869848 PputGB1_2059 Pseudomonas putida GB-1 hypothetical protein YP_001668296.1 2310786 R 76869 CDS YP_001668297.1 167033066 5869849 complement(2312094..2314220) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2012 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2314220 5869849 PputGB1_2060 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668297.1 2312094 R 76869 CDS YP_001668298.1 167033067 5869850 complement(2314602..2315171) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2134 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2315171 5869850 PputGB1_2061 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001668298.1 2314602 R 76869 CDS YP_001668299.1 167033068 5869851 complement(2315250..2315594) 1 NC_010322.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN2135 carboxymuconolactone decarboxylase; alkylhydroperoxidase 2315594 5869851 PputGB1_2062 Pseudomonas putida GB-1 alkylhydroperoxidase YP_001668299.1 2315250 R 76869 CDS YP_001668300.1 167033069 5869852 complement(2315728..2316627) 1 NC_010322.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN2136 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 2316627 5869852 PputGB1_2063 Pseudomonas putida GB-1 aspartyl/asparaginyl beta-hydroxylase YP_001668300.1 2315728 R 76869 CDS YP_001668301.1 167033070 5869853 2316786..2317331 1 NC_010322.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pen:PSEEN2137 2'-5' RNA ligase; 2'-5' RNA ligase 2317331 5869853 PputGB1_2064 Pseudomonas putida GB-1 2'-5' RNA ligase YP_001668301.1 2316786 D 76869 CDS YP_001668302.1 167033071 5869854 complement(2317339..2319768) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_3491 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; TonB-dependent siderophore receptor 2319768 5869854 PputGB1_2065 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668302.1 2317339 R 76869 CDS YP_001668303.1 167033072 5869855 complement(2319862..2320836) 1 NC_010322.1 PFAM: FecR protein; KEGG: mms:mma_2023 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 2320836 5869855 PputGB1_2066 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001668303.1 2319862 R 76869 CDS YP_001668304.1 167033073 5869856 complement(2320833..2321339) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3271 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2321339 5869856 PputGB1_2067 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001668304.1 2320833 R 76869 CDS YP_001668305.1 167033074 5869857 complement(2321428..2322024) 1 NC_010322.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN2157 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2322024 5869857 PputGB1_2068 Pseudomonas putida GB-1 NAD(P)H dehydrogenase (quinone) YP_001668305.1 2321428 R 76869 CDS YP_001668306.1 167033075 5869858 2322117..2322713 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2158 transcriptional regulator, TetR family; TetR family transcriptional regulator 2322713 5869858 PputGB1_2069 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668306.1 2322117 D 76869 CDS YP_001668307.1 167033076 5869859 complement(2322763..2323668) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_1817 transcriptional regulator, AraC family; AraC family transcriptional regulator 2323668 5869859 PputGB1_2070 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668307.1 2322763 R 76869 CDS YP_001668308.1 167033077 5869860 2323850..2324902 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_1816 oxidoreductase, zinc-binding; alcohol dehydrogenase 2324902 5869860 PputGB1_2071 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001668308.1 2323850 D 76869 CDS YP_001668309.1 167033078 5869861 complement(2324982..2326298) 1 NC_010322.1 KEGG: pen:PSEEN2301 hypothetical protein; hypothetical protein 2326298 5869861 PputGB1_2072 Pseudomonas putida GB-1 hypothetical protein YP_001668309.1 2324982 R 76869 CDS YP_001668310.1 167033079 5869862 2326503..2327702 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2302 sugar exporter, MFS family; sugar efflux transporter 2327702 5869862 PputGB1_2073 Pseudomonas putida GB-1 sugar efflux transporter YP_001668310.1 2326503 D 76869 CDS YP_001668311.1 167033080 5869863 complement(2327753..2328337) 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2303 transporter, LysE family; lysine exporter protein LysE/YggA 2328337 5869863 PputGB1_2074 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668311.1 2327753 R 76869 CDS YP_001668312.1 167033081 5869864 complement(2328388..2329224) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN2304 transcriptional regulator, AraC family; AraC family transcriptional regulator 2329224 5869864 PputGB1_2075 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668312.1 2328388 R 76869 CDS YP_001668313.1 167033082 5869865 complement(2329267..2330196) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2306 transcriptional regulator, LysR family; LysR family transcriptional regulator 2330196 5869865 PputGB1_2076 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668313.1 2329267 R 76869 CDS YP_001668314.1 167033083 5869866 2330294..2330947 1 NC_010322.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 2330947 5869866 PputGB1_2077 Pseudomonas putida GB-1 dihydropteridine reductase YP_001668314.1 2330294 D 76869 CDS YP_001668315.1 167033084 5869867 2331057..2331506 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: psa:PST_0247 hypothetical protein; hypothetical protein 2331506 5869867 PputGB1_2078 Pseudomonas putida GB-1 hypothetical protein YP_001668315.1 2331057 D 76869 CDS YP_001668316.1 167033085 5869868 2331503..2331940 1 NC_010322.1 PFAM: RES domain protein; KEGG: rpb:RPB_4184 hypothetical protein; RES domain-containing protein 2331940 5869868 PputGB1_2079 Pseudomonas putida GB-1 RES domain-containing protein YP_001668316.1 2331503 D 76869 CDS YP_001668317.1 167033086 5869869 complement(2331948..2333102) 1 NC_010322.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN3349 cysteine desulfurase; class V aminotransferase 2333102 5869869 PputGB1_2080 Pseudomonas putida GB-1 class V aminotransferase YP_001668317.1 2331948 R 76869 CDS YP_001668318.1 167033087 5869870 complement(2333297..2334223) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 2334223 5869870 PputGB1_2081 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668318.1 2333297 R 76869 CDS YP_001668319.1 167033088 5869871 2334364..2335593 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3343 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2335593 5869871 PputGB1_2082 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001668319.1 2334364 D 76869 CDS YP_001668320.1 167033089 5869872 2335892..2337292 1 NC_010322.1 KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein 2337292 5869872 PputGB1_2083 Pseudomonas putida GB-1 hypothetical protein YP_001668320.1 2335892 D 76869 CDS YP_001668321.1 167033090 5869873 2337312..2337674 1 NC_010322.1 hypothetical protein 2337674 5869873 PputGB1_2084 Pseudomonas putida GB-1 hypothetical protein YP_001668321.1 2337312 D 76869 CDS YP_001668322.1 167033091 5869874 2337741..2338472 1 NC_010322.1 KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein 2338472 5869874 PputGB1_2085 Pseudomonas putida GB-1 hypothetical protein YP_001668322.1 2337741 D 76869 CDS YP_001668323.1 167033092 5869875 complement(2338864..2339928) 1 NC_010322.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN3035 hypothetical protein; integral membrane protein TerC 2339928 5869875 PputGB1_2086 Pseudomonas putida GB-1 integral membrane protein TerC YP_001668323.1 2338864 R 76869 CDS YP_001668324.1 167033093 5869876 complement(2340095..2341402) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3030 periplamic phosphate-binding protein; OmpA/MotB domain-containing protein 2341402 5869876 PputGB1_2087 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001668324.1 2340095 R 76869 CDS YP_001668325.1 167033094 5869877 complement(2341516..2342664) 1 NC_010322.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3041 polyamine ABC transporter, ATP binding protein; ABC transporter-like protein 2342664 5869877 PputGB1_2088 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668325.1 2341516 R 76869 CDS YP_001668326.1 167033095 5869878 complement(2342682..2343488) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3040 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2343488 5869878 PputGB1_2089 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668326.1 2342682 R 76869 CDS YP_001668327.1 167033096 5869879 complement(2343495..2344412) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3039 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2344412 5869879 PputGB1_2090 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668327.1 2343495 R 76869 CDS YP_001668328.1 167033097 5869880 complement(2344409..2345434) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3038 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 2345434 5869880 PputGB1_2091 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668328.1 2344409 R 76869 CDS YP_001668329.1 167033098 5869881 complement(2345791..2346912) 1 NC_010322.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2346912 5869881 PputGB1_2092 Pseudomonas putida GB-1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001668329.1 2345791 R 76869 CDS YP_001668330.1 167033099 5869882 2346991..2347284 1 NC_010322.1 PFAM: protein of unknown function DUF1330; KEGG: pen:PSEEN3036 hypothetical protein; hypothetical protein 2347284 5869882 PputGB1_2093 Pseudomonas putida GB-1 hypothetical protein YP_001668330.1 2346991 D 76869 CDS YP_001668331.1 167033100 5869883 complement(2347349..2348368) 1 NC_010322.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pfo:Pfl_1969 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein 2348368 5869883 PputGB1_2094 Pseudomonas putida GB-1 alpha/beta hydrolase domain-containing protein YP_001668331.1 2347349 R 76869 CDS YP_001668332.1 167033101 5869884 2348503..2349399 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1970 transcriptional regulator, LysR family; LysR family transcriptional regulator 2349399 5869884 PputGB1_2095 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668332.1 2348503 D 76869 CDS YP_001668333.1 167033102 5869885 complement(2349407..2350669) 1 NC_010322.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2702 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2350669 5869885 PputGB1_2096 Pseudomonas putida GB-1 cyclopropane-fatty-acyl-phospholipid synthase YP_001668333.1 2349407 R 76869 CDS YP_001668334.1 167033103 5869886 complement(2350644..2351456) 1 NC_010322.1 PFAM: protein of unknown function DUF1365; KEGG: pen:PSEEN2703 hypothetical protein; hypothetical protein 2351456 5869886 PputGB1_2097 Pseudomonas putida GB-1 hypothetical protein YP_001668334.1 2350644 R 76869 CDS YP_001668335.1 167033104 5869887 complement(2351453..2352700) 1 NC_010322.1 PFAM: amine oxidase; KEGG: pen:PSEEN2704 hypothetical protein; amine oxidase 2352700 5869887 PputGB1_2098 Pseudomonas putida GB-1 amine oxidase YP_001668335.1 2351453 R 76869 CDS YP_001668336.1 167033105 5869888 complement(2352704..2353456) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2705 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2353456 5869888 PputGB1_2099 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668336.1 2352704 R 76869 CDS YP_001668337.1 167033106 5869889 complement(2353453..2353875) 1 NC_010322.1 PFAM: protein of unknown function DUF1486; KEGG: pen:PSEEN2706 hypothetical protein; hypothetical protein 2353875 5869889 PputGB1_2100 Pseudomonas putida GB-1 hypothetical protein YP_001668337.1 2353453 R 76869 CDS YP_001668338.1 167033107 5869890 complement(2354019..2354603) 1 NC_010322.1 KEGG: pmy:Pmen_3475 hypothetical protein; hypothetical protein 2354603 5869890 PputGB1_2101 Pseudomonas putida GB-1 hypothetical protein YP_001668338.1 2354019 R 76869 CDS YP_001668339.1 167033108 5869891 complement(2354607..2357510) 1 NC_010322.1 PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: pmy:Pmen_3474 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 2357510 5869891 PputGB1_2102 Pseudomonas putida GB-1 glycine cleavage T protein (aminomethyl transferase) YP_001668339.1 2354607 R 76869 CDS YP_001668340.1 167033109 5869892 complement(2357507..2357812) 1 NC_010322.1 PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: psb:Psyr_2223 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta heterotetrameric 2357812 5869892 PputGB1_2103 Pseudomonas putida GB-1 sarcosine oxidase subunit delta heterotetrameric YP_001668340.1 2357507 R 76869 CDS YP_001668341.1 167033110 5869893 complement(2357825..2359066) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_3472 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2359066 5869893 PputGB1_2104 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668341.1 2357825 R 76869 CDS YP_001668342.1 167033111 5869894 complement(2359048..2359959) 1 NC_010322.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2359959 5869894 PputGB1_2105 Pseudomonas putida GB-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001668342.1 2359048 R 76869 CDS YP_001668343.1 167033112 5869895 complement(2359956..2360822) 1 NC_010322.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: pmy:Pmen_3470 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 2360822 5869895 PputGB1_2106 Pseudomonas putida GB-1 formyltetrahydrofolate deformylase YP_001668343.1 2359956 R 76869 CDS YP_001668344.1 167033113 5869896 2361033..2361434 1 NC_010322.1 KEGG: pen:PSEEN3331 hypothetical protein; hypothetical protein 2361434 5869896 PputGB1_2107 Pseudomonas putida GB-1 hypothetical protein YP_001668344.1 2361033 D 76869 CDS YP_001668345.1 167033114 5869897 2361568..2361789 1 NC_010322.1 PFAM: MbtH domain protein; KEGG: pen:PSEEN3329 hypothetical protein; MbtH domain-containing protein 2361789 5869897 PputGB1_2108 Pseudomonas putida GB-1 MbtH domain-containing protein YP_001668345.1 2361568 D 76869 CDS YP_001668346.1 167033115 5869898 2361786..2362505 1 NC_010322.1 PFAM: Thioesterase; KEGG: pen:PSEEN3328 thioesterase involved in non-ribosomal peptide biosynthesis; thioesterase 2362505 5869898 PputGB1_2109 Pseudomonas putida GB-1 thioesterase YP_001668346.1 2361786 D 76869 CDS YP_001668347.1 167033116 5869899 2362563..2363114 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3325 hydrolase, isochorismatase family; isochorismatase hydrolase 2363114 5869899 PputGB1_2110 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001668347.1 2362563 D 76869 CDS YP_001668348.1 167033117 5869900 2363141..2364193 1 NC_010322.1 PFAM: protein of unknown function DUF1615; KEGG: pen:PSEEN3324 hypothetical protein; hypothetical protein 2364193 5869900 PputGB1_2111 Pseudomonas putida GB-1 hypothetical protein YP_001668348.1 2363141 D 76869 CDS YP_001668349.1 167033118 5869901 complement(2364223..2365086) 1 NC_010322.1 KEGG: pen:PSEEN3242 hypothetical protein; hypothetical protein 2365086 5869901 PputGB1_2112 Pseudomonas putida GB-1 hypothetical protein YP_001668349.1 2364223 R 76869 CDS YP_001668350.1 167033119 5869902 complement(2365083..2365982) 1 NC_010322.1 PFAM: ABC-3 protein; KEGG: pen:PSEEN3241 cation ABC transporter, permease protein; ABC-3 protein 2365982 5869902 PputGB1_2113 Pseudomonas putida GB-1 ABC-3 protein YP_001668350.1 2365083 R 76869 CDS YP_001668351.1 167033120 5869903 complement(2365982..2366728) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3240 cation ABC transporter, ATP-binding protein; ABC transporter-like protein 2366728 5869903 PputGB1_2114 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668351.1 2365982 R 76869 CDS YP_001668352.1 167033121 5869904 complement(2366725..2367627) 1 NC_010322.1 PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN3239 cation ABC transporter, periplasmic cation-binding protein; periplasmic solute binding protein 2367627 5869904 PputGB1_2115 Pseudomonas putida GB-1 periplasmic solute binding protein YP_001668352.1 2366725 R 76869 CDS YP_001668353.1 167033122 5869905 complement(2367644..2368213) 1 NC_010322.1 KEGG: pen:PSEEN3238 hypothetical protein; hypothetical protein 2368213 5869905 PputGB1_2116 Pseudomonas putida GB-1 hypothetical protein YP_001668353.1 2367644 R 76869 CDS YP_001668354.1 167033123 5869906 complement(2368210..2368530) 1 NC_010322.1 KEGG: pen:PSEEN3237 hypothetical protein; hypothetical protein 2368530 5869906 PputGB1_2117 Pseudomonas putida GB-1 hypothetical protein YP_001668354.1 2368210 R 76869 CDS YP_001668355.1 167033124 5869907 complement(2368527..2369066) 1 NC_010322.1 KEGG: pen:PSEEN3236 hypothetical protein; hypothetical protein 2369066 5869907 PputGB1_2118 Pseudomonas putida GB-1 hypothetical protein YP_001668355.1 2368527 R 76869 CDS YP_001668356.1 167033125 5869908 complement(2369063..2370256) 1 NC_010322.1 PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN3235 hypothetical protein; peptidase 2370256 5869908 PputGB1_2119 Pseudomonas putida GB-1 peptidase YP_001668356.1 2369063 R 76869 CDS YP_001668357.1 167033126 5869909 complement(2370433..2371767) 1 NC_010322.1 KEGG: pen:PSEEN3223 L-ornithine N5-oxygenase PvdA; L-ornithine N5-oxygenase PvdA 2371767 5869909 PputGB1_2120 Pseudomonas putida GB-1 L-ornithine N5-oxygenase PvdA YP_001668357.1 2370433 R 76869 CDS YP_001668358.1 167033127 5869910 2371942..2372388 1 NC_010322.1 KEGG: pen:PSEEN3219 hypothetical protein; hypothetical protein 2372388 5869910 PputGB1_2121 Pseudomonas putida GB-1 hypothetical protein YP_001668358.1 2371942 D 76869 CDS YP_001668359.1 167033128 5869911 complement(2372479..2373405) 1 NC_010322.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2373405 pbpG 5869911 pbpG Pseudomonas putida GB-1 D-alanyl-D-alanine endopeptidase YP_001668359.1 2372479 R 76869 CDS YP_001668360.1 167033129 5869912 2373948..2374145 1 NC_010322.1 KEGG: pen:PSEEN3601 transcriptional regulator CynR; transcriptional regulator CynR 2374145 5869912 PputGB1_2123 Pseudomonas putida GB-1 transcriptional regulator CynR YP_001668360.1 2373948 D 76869 CDS YP_001668361.1 167033130 5869913 2374388..2375092 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2375092 5869913 PputGB1_2124 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668361.1 2374388 D 76869 CDS YP_001668362.1 167033131 5869914 2375146..2375700 1 NC_010322.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bvi:Bcep1808_4018 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2375700 5869914 PputGB1_2125 Pseudomonas putida GB-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001668362.1 2375146 D 76869 CDS YP_001668363.1 167033132 5869915 2375717..2376109 1 NC_010322.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN5448 endoribonuclease L-PSP; endoribonuclease L-PSP 2376109 5869915 PputGB1_2126 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001668363.1 2375717 D 76869 CDS YP_001668364.1 167033133 5869916 2376209..2377852 1 NC_010322.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2377852 5869916 PputGB1_2127 Pseudomonas putida GB-1 acetolactate synthase YP_001668364.1 2376209 D 76869 CDS YP_001668365.1 167033134 5869917 complement(2378242..2378478) 1 NC_010322.1 hypothetical protein 2378478 5869917 PputGB1_2128 Pseudomonas putida GB-1 hypothetical protein YP_001668365.1 2378242 R 76869 CDS YP_001668366.1 167033135 5869918 complement(2378669..2379343) 1 NC_010322.1 PFAM: Alginate lyase 2; KEGG: pap:PSPA7_2458 alginate lyase superfamily; alginate lyase 2 2379343 5869918 PputGB1_2129 Pseudomonas putida GB-1 alginate lyase 2 YP_001668366.1 2378669 R 76869 CDS YP_001668367.1 167033136 5869919 2379589..2379912 1 NC_010322.1 PFAM: protein of unknown function DUF1654; KEGG: psp:PSPPH_2150 hypothetical protein; hypothetical protein 2379912 5869919 PputGB1_2130 Pseudomonas putida GB-1 hypothetical protein YP_001668367.1 2379589 D 76869 CDS YP_001668368.1 167033137 5869920 complement(2379951..2380820) 1 NC_010322.1 PFAM: peptidase S24 and S26 domain protein; KEGG: psp:PSPPH_2151 prophage PSPPH03, transcriptional regulator, Cro/CI family; putative phage repressor 2380820 5869920 PputGB1_2131 Pseudomonas putida GB-1 putative phage repressor YP_001668368.1 2379951 R 76869 CDS YP_001668369.1 167033138 5869921 2380940..2381254 1 NC_010322.1 KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein 2381254 5869921 PputGB1_2132 Pseudomonas putida GB-1 hypothetical protein YP_001668369.1 2380940 D 76869 CDS YP_001668370.1 167033139 5869922 complement(2381331..2381513) 1 NC_010322.1 KEGG: pen:PSEEN3216 hypothetical protein; hypothetical protein 2381513 5869922 PputGB1_2133 Pseudomonas putida GB-1 hypothetical protein YP_001668370.1 2381331 R 76869 CDS YP_001668371.1 167033140 5869923 complement(2381608..2381958) 1 NC_010322.1 KEGG: pen:PSEEN3215 hypothetical protein; hypothetical protein 2381958 5869923 PputGB1_2134 Pseudomonas putida GB-1 hypothetical protein YP_001668371.1 2381608 R 76869 CDS YP_001668372.1 167033141 5869924 2382120..2382941 1 NC_010322.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2382941 5869924 PputGB1_2135 Pseudomonas putida GB-1 shikimate 5-dehydrogenase YP_001668372.1 2382120 D 76869 CDS YP_001668373.1 167033142 5869925 complement(2383006..2383248) 1 NC_010322.1 KEGG: pen:PSEEN3213 hypothetical protein; hypothetical protein 2383248 5869925 PputGB1_2136 Pseudomonas putida GB-1 hypothetical protein YP_001668373.1 2383006 R 76869 CDS YP_001668374.1 167033143 5869926 complement(2383346..2383873) 1 NC_010322.1 KEGG: pen:PSEEN3212 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2383873 5869926 PputGB1_2137 Pseudomonas putida GB-1 lactoylglutathione lyase YP_001668374.1 2383346 R 76869 CDS YP_001668375.1 167033144 5869927 complement(2384099..2384458) 1 NC_010322.1 KEGG: pen:PSEEN3211 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit 2384458 5869927 PputGB1_2138 Pseudomonas putida GB-1 transcriptional regulator MvaT, P16 subunit YP_001668375.1 2384099 R 76869 CDS YP_001668376.1 167033145 5869928 2384805..2386106 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN3209 OprD-like porin; outer membrane porin 2386106 5869928 PputGB1_2139 Pseudomonas putida GB-1 outer membrane porin YP_001668376.1 2384805 D 76869 CDS YP_001668377.1 167033146 5869929 2386174..2386923 1 NC_010322.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2386923 5869929 PputGB1_2140 Pseudomonas putida GB-1 precorrin 6A synthase YP_001668377.1 2386174 D 76869 CDS YP_001668378.1 167033147 5869930 complement(2386939..2387289) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3207 response regulator; response regulator receiver protein 2387289 5869930 PputGB1_2141 Pseudomonas putida GB-1 response regulator receiver protein YP_001668378.1 2386939 R 76869 CDS YP_001668379.1 167033148 5869931 2387556..2391005 1 NC_010322.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: pen:PSEEN3205 sensor histidine kinase/response regulator (hybrid); multi-sensor hybrid histidine kinase 2391005 5869931 PputGB1_2142 Pseudomonas putida GB-1 multi-sensor hybrid histidine kinase YP_001668379.1 2387556 D 76869 CDS YP_001668380.1 167033149 5869932 2391002..2391823 1 NC_010322.1 PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3204 chemotaxis protein methyltransferase, CheR-like; chemotaxis protein CheR 2391823 5869932 PputGB1_2143 Pseudomonas putida GB-1 chemotaxis protein CheR YP_001668380.1 2391002 D 76869 CDS YP_001668381.1 167033150 5869933 2391820..2392395 1 NC_010322.1 PFAM: CheB methylesterase; KEGG: pen:PSEEN3203 methylesterase, CheB-like; CheB methylesterase 2392395 5869933 PputGB1_2144 Pseudomonas putida GB-1 CheB methylesterase YP_001668381.1 2391820 D 76869 CDS YP_001668382.1 167033151 5869934 2392389..2393615 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3202 response regulator/sensor histidine kinase (hybrid); response regulator receiver sensor signal transduction histidine kinase 2393615 5869934 PputGB1_2145 Pseudomonas putida GB-1 response regulator receiver sensor signal transduction histidine kinase YP_001668382.1 2392389 D 76869 CDS YP_001668383.1 167033152 5869935 2393660..2394037 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3201 response regulator; response regulator receiver protein 2394037 5869935 PputGB1_2146 Pseudomonas putida GB-1 response regulator receiver protein YP_001668383.1 2393660 D 76869 CDS YP_001668384.1 167033153 5869936 complement(2394188..2394769) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN3199 transcriptional regulator, TetR family; TetR family transcriptional regulator 2394769 5869936 PputGB1_2147 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668384.1 2394188 R 76869 CDS YP_001668385.1 167033154 5869937 complement(2394782..2395630) 1 NC_010322.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pen:PSEEN3198 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 2395630 5869937 PputGB1_2148 Pseudomonas putida GB-1 3-hydroxybutyryl-CoA dehydrogenase YP_001668385.1 2394782 R 76869 CDS YP_001668386.1 167033155 5869938 complement(2395644..2396828) 1 NC_010322.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2396828 5869938 PputGB1_2149 Pseudomonas putida GB-1 beta-ketothiolase YP_001668386.1 2395644 R 76869 CDS YP_001668387.1 167033156 5869939 2396999..2398018 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3196 transcriptional regulator, AraC family; AraC family transcriptional regulator 2398018 5869939 PputGB1_2150 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668387.1 2396999 D 76869 CDS YP_001668388.1 167033157 5869940 complement(2398023..2398460) 1 NC_010322.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN3195 hypothetical protein; alkylhydroperoxidase 2398460 5869940 PputGB1_2151 Pseudomonas putida GB-1 alkylhydroperoxidase YP_001668388.1 2398023 R 76869 CDS YP_001668389.1 167033158 5869941 2398661..2399857 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3193 transporter, MFS family; major facilitator superfamily transporter 2399857 5869941 PputGB1_2152 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668389.1 2398661 D 76869 CDS YP_001668390.1 167033159 5869942 complement(2399850..2401358) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3192 transcriptional regulator, GntR family; transcriptional regulator 2401358 5869942 PputGB1_2153 Pseudomonas putida GB-1 transcriptional regulator YP_001668390.1 2399850 R 76869 CDS YP_001668391.1 167033160 5869943 complement(2401367..2401705) 1 NC_010322.1 KEGG: pen:PSEEN3191 hypothetical protein; hypothetical protein 2401705 5869943 PputGB1_2154 Pseudomonas putida GB-1 hypothetical protein YP_001668391.1 2401367 R 76869 CDS YP_001668392.1 167033161 5869944 2401902..2402480 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3190 NAD(P)H-flavin oxidoreductase; flavin reductase domain-containing protein 2402480 5869944 PputGB1_2155 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001668392.1 2401902 D 76869 CDS YP_001668393.1 167033162 5869945 complement(2402566..2402964) 1 NC_010322.1 PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN3189 hypothetical protein; hypothetical protein 2402964 5869945 PputGB1_2156 Pseudomonas putida GB-1 hypothetical protein YP_001668393.1 2402566 R 76869 CDS YP_001668394.1 167033163 5869946 complement(2402957..2404192) 1 NC_010322.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN3188 glycolate oxidase subunit, FeS protein; glycolate oxidase iron-sulfur subunit 2404192 glcF 5869946 glcF Pseudomonas putida GB-1 glycolate oxidase iron-sulfur subunit YP_001668394.1 2402957 R 76869 CDS YP_001668395.1 167033164 5869947 complement(2404202..2405254) 1 NC_010322.1 PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3187 glycolate oxidase, subunit GlcE; glycolate oxidase FAD binding subunit 2405254 glcE 5869947 glcE Pseudomonas putida GB-1 glycolate oxidase FAD binding subunit YP_001668395.1 2404202 R 76869 CDS YP_001668396.1 167033165 5869948 complement(2405254..2406753) 1 NC_010322.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3186 glycolate oxidase, FAD-linked subunit; glycolate oxidase subunit GlcD 2406753 5869948 PputGB1_2159 Pseudomonas putida GB-1 glycolate oxidase subunit GlcD YP_001668396.1 2405254 R 76869 CDS YP_001668397.1 167033166 5869949 2406948..2407712 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pau:PA14_70710 glc operon transcriptional activator; DNA-binding transcriptional regulator GlcC 2407712 5869949 PputGB1_2160 Pseudomonas putida GB-1 DNA-binding transcriptional regulator GlcC YP_001668397.1 2406948 D 76869 CDS YP_001668398.1 167033167 5869950 complement(2407774..2408091) 1 NC_010322.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2379 hypothetical protein; hypothetical protein 2408091 5869950 PputGB1_2161 Pseudomonas putida GB-1 hypothetical protein YP_001668398.1 2407774 R 76869 CDS YP_001668399.1 167033168 5869951 complement(2408253..2409353) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 2409353 5869951 PputGB1_2162 Pseudomonas putida GB-1 putative sigma-54 specific transcriptional regulator YP_001668399.1 2408253 R 76869 CDS YP_001668400.1 167033169 5869952 complement(2409363..2410550) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl_3917 acyl-CoA dehydrogenase-like; type 2 acyl-CoA dehydrogenase 2410550 5869952 PputGB1_2163 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001668400.1 2409363 R 76869 CDS YP_001668401.1 167033170 5869953 complement(2410560..2411120) 1 NC_010322.1 PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase; FMN reductase 2411120 5869953 PputGB1_2164 Pseudomonas putida GB-1 FMN reductase YP_001668401.1 2410560 R 76869 CDS YP_001668402.1 167033171 5869954 complement(2411418..2413385) 1 NC_010322.1 KEGG: pen:PSEEN2489 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 2413385 5869954 PputGB1_2165 Pseudomonas putida GB-1 penicillin-binding protein 2 YP_001668402.1 2411418 R 76869 CDS YP_001668403.1 167033172 5869955 2413874..2415214 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3480 major facilitator family transporter; major facilitator superfamily transporter 2415214 5869955 PputGB1_2166 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668403.1 2413874 D 76869 CDS YP_001668404.1 167033173 5869956 2415318..2416571 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pfl:PFL_3474 BenF-like porin; outer membrane porin 2416571 5869956 PputGB1_2167 Pseudomonas putida GB-1 outer membrane porin YP_001668404.1 2415318 D 76869 CDS YP_001668405.1 167033174 5869957 2416682..2417395 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3473 transcriptional regulator VanR; GntR family transcriptional regulator 2417395 5869957 PputGB1_2168 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668405.1 2416682 D 76869 CDS YP_001668406.1 167033175 5869958 complement(2417402..2418352) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: psp:PSPPH_2474 vanillate monooxygenase, oxidoreductase subunit; ferredoxin 2418352 5869958 PputGB1_2169 Pseudomonas putida GB-1 ferredoxin YP_001668406.1 2417402 R 76869 CDS YP_001668407.1 167033176 5869959 complement(2418365..2419432) 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein 2419432 5869959 PputGB1_2170 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001668407.1 2418365 R 76869 CDS YP_001668408.1 167033177 5869960 2419646..2420311 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2026 ABC transporter-like; ABC transporter-like protein 2420311 5869960 PputGB1_2171 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668408.1 2419646 D 76869 CDS YP_001668409.1 167033178 5869961 2420311..2422773 1 NC_010322.1 PFAM: protein of unknown function DUF214; KEGG: pfl:PFL_2229 ABC transporter, permease protein, putative; hypothetical protein 2422773 5869961 PputGB1_2172 Pseudomonas putida GB-1 hypothetical protein YP_001668409.1 2420311 D 76869 CDS YP_001668410.1 167033179 5869962 2422763..2423818 1 NC_010322.1 KEGG: pfl:PFL_2230 lipoprotein, putative; putative lipoprotein 2423818 5869962 PputGB1_2173 Pseudomonas putida GB-1 putative lipoprotein YP_001668410.1 2422763 D 76869 CDS YP_001668411.1 167033180 5869963 complement(2423979..2424725) 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfo:Pfl_4449 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2424725 5869963 PputGB1_2174 Pseudomonas putida GB-1 enoyl-CoA hydratase/isomerase YP_001668411.1 2423979 R 76869 CDS YP_001668412.1 167033181 5869964 2424825..2425469 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_2706 transcriptional regulator, TetR family; TetR family transcriptional regulator 2425469 5869964 PputGB1_2175 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668412.1 2424825 D 76869 CDS YP_001668413.1 167033182 5869965 2425543..2426259 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_2707 DNA-binding response regulator; two component transcriptional regulator 2426259 5869965 PputGB1_2176 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668413.1 2425543 D 76869 CDS YP_001668414.1 167033183 5869966 2426256..2427032 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pfl:PFL_2708 periplasmic amino acid-binding protein-related protein; extracellular solute-binding protein 2427032 5869966 PputGB1_2177 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668414.1 2426256 D 76869 CDS YP_001668415.1 167033184 5869967 2427029..2429281 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pfl:PFL_2709 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2429281 5869967 PputGB1_2178 Pseudomonas putida GB-1 multi-sensor hybrid histidine kinase YP_001668415.1 2427029 D 76869 CDS YP_001668416.1 167033185 5869968 2429478..2430884 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pfl:PFL_2710 amino acid transporter, AAT family; amino acid permease-associated protein 2430884 5869968 PputGB1_2179 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668416.1 2429478 D 76869 CDS YP_001668417.1 167033186 5869969 2431318..2432112 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfl:PFL_2711 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2432112 5869969 PputGB1_2180 Pseudomonas putida GB-1 enoyl-CoA hydratase/isomerase YP_001668417.1 2431318 D 76869 CDS YP_001668418.1 167033187 5869970 2432145..2433305 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pae:PA4979 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2433305 5869970 PputGB1_2181 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001668418.1 2432145 D 76869 CDS YP_001668419.1 167033188 5869971 2433322..2435439 1 NC_010322.1 KEGG: pfl:PFL_2713 acyl-CoA synthetase, putative; acyl-CoA synthetase 2435439 5869971 PputGB1_2182 Pseudomonas putida GB-1 acyl-CoA synthetase YP_001668419.1 2433322 D 76869 CDS YP_001668420.1 167033189 5869972 2435432..2437039 1 NC_010322.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pap:PSPA7_5710 probable acetolactate synthase large subunit; hypothetical protein 2437039 5869972 PputGB1_2183 Pseudomonas putida GB-1 hypothetical protein YP_001668420.1 2435432 D 76869 CDS YP_001668421.1 167033190 5869973 2437074..2438303 1 NC_010322.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2438303 alr 5869973 alr Pseudomonas putida GB-1 alanine racemase YP_001668421.1 2437074 D 76869 CDS YP_001668422.1 167033191 5869974 2438328..2439518 1 NC_010322.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pae:PA4976 aspartate transaminase; class I/II aminotransferase 2439518 5869974 PputGB1_2185 Pseudomonas putida GB-1 class I/II aminotransferase YP_001668422.1 2438328 D 76869 CDS YP_001668423.1 167033192 5869975 2439511..2440923 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: cps:CPS_0387 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2440923 5869975 PputGB1_2186 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668423.1 2439511 D 76869 CDS YP_001668424.1 167033193 5869976 2440967..2441668 1 NC_010322.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pfl:PFL_2716 NAD(P)H dehydrogenase, quinone family; ribosyldihydronicotinamide dehydrogenase 2441668 5869976 PputGB1_2187 Pseudomonas putida GB-1 ribosyldihydronicotinamide dehydrogenase YP_001668424.1 2440967 D 76869 CDS YP_001668425.1 167033194 5869977 2441842..2442945 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pfl:PFL_3466 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 2442945 5869977 PputGB1_2188 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668425.1 2441842 D 76869 CDS YP_001668426.1 167033195 5869978 2442980..2444392 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pfl:PFL_3467 hypothetical protein; hypothetical protein 2444392 5869978 PputGB1_2189 Pseudomonas putida GB-1 hypothetical protein YP_001668426.1 2442980 D 76869 CDS YP_001668427.1 167033196 5869979 2444389..2445285 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pfl:PFL_3468 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2445285 5869979 PputGB1_2190 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001668427.1 2444389 D 76869 CDS YP_001668428.1 167033197 5869980 2445434..2446960 1 NC_010322.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pmy:Pmen_2182 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2446960 5869980 PputGB1_2191 Pseudomonas putida GB-1 filamentation induced by cAMP protein fic YP_001668428.1 2445434 D 76869 CDS YP_001668429.1 167033198 5869981 complement(2446966..2448045) 1 NC_010322.1 KEGG: pen:PSEEN2265 sensor box protein; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; XRE family transcriptional regulator 2448045 5869981 PputGB1_2192 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668429.1 2446966 R 76869 CDS YP_001668430.1 167033199 5869982 complement(2448263..2449234) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2129 dioxygenase, beta subunit; ferredoxin 2449234 5869982 PputGB1_2193 Pseudomonas putida GB-1 ferredoxin YP_001668430.1 2448263 R 76869 CDS YP_001668431.1 167033200 5869983 complement(2449313..2450434) 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN2130 dioxygenase, alpha subunit; Rieske (2Fe-2S) domain-containing protein 2450434 5869983 PputGB1_2194 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001668431.1 2449313 R 76869 CDS YP_001668432.1 167033201 5869984 complement(2450556..2452154) 1 NC_010322.1 member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter 2452154 5869984 PputGB1_2195 Pseudomonas putida GB-1 putative transporter YP_001668432.1 2450556 R 76869 CDS YP_001668433.1 167033202 5869985 complement(2452349..2453440) 1 NC_010322.1 KEGG: pen:PSEEN2132 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 2453440 5869985 PputGB1_2196 Pseudomonas putida GB-1 tartrate dehydrogenase YP_001668433.1 2452349 R 76869 CDS YP_001668434.1 167033203 5869986 2453538..2454449 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2133 transcriptional regulator, LysR family; LysR family transcriptional regulator 2454449 5869986 PputGB1_2197 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668434.1 2453538 D 76869 CDS YP_001668435.1 167033204 5869987 complement(2454488..2454970) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_3639 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2454970 5869987 PputGB1_2198 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668435.1 2454488 R 76869 CDS YP_001668436.1 167033205 5869988 2455095..2456126 1 NC_010322.1 PFAM: histone deacetylase superfamily; KEGG: pfl:PFL_3640 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein 2456126 5869988 PputGB1_2199 Pseudomonas putida GB-1 histone deacetylase superfamily protein YP_001668436.1 2455095 D 76869 CDS YP_001668437.1 167033206 5869989 2456203..2457606 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pfl:PFL_3642 D-serine/D-alanine/glycine transporter; amino acid permease-associated protein 2457606 5869989 PputGB1_2200 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668437.1 2456203 D 76869 CDS YP_001668438.1 167033207 5869990 2457749..2460997 1 NC_010322.1 KEGG: ypi:YpsIP31758_2494 hypothetical protein; hypothetical protein 2460997 5869990 PputGB1_2201 Pseudomonas putida GB-1 hypothetical protein YP_001668438.1 2457749 D 76869 CDS YP_001668439.1 167033208 5869991 2460984..2461805 1 NC_010322.1 KEGG: ypi:YpsIP31758_2493 hypothetical protein; hypothetical protein 2461805 5869991 PputGB1_2202 Pseudomonas putida GB-1 hypothetical protein YP_001668439.1 2460984 D 76869 CDS YP_001668440.1 167033209 5869992 complement(2461838..2462710) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_32200 transcriptional regulator CatR; LysR family transcriptional regulator 2462710 5869992 PputGB1_2203 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668440.1 2461838 R 76869 CDS YP_001668441.1 167033210 5869993 2462846..2463967 1 NC_010322.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pen:PSEEN3138 muconate cycloisomerase I (cis,cis-muconate lactonizing enzyme I) (MLE); muconate and chloromuconate cycloisomerase 2463967 5869993 PputGB1_2204 Pseudomonas putida GB-1 muconate and chloromuconate cycloisomerase YP_001668441.1 2462846 D 76869 CDS YP_001668442.1 167033211 5869994 2463989..2464279 1 NC_010322.1 KEGG: pen:PSEEN3137 muconolactone delta-isomerase (MIase); TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase 2464279 5869994 PputGB1_2205 Pseudomonas putida GB-1 muconolactone delta-isomerase YP_001668442.1 2463989 D 76869 CDS YP_001668443.1 167033212 5869995 2464323..2465258 1 NC_010322.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pfo:Pfl_2961 intradiol ring-cleavage dioxygenase; catechol 1,2-dioxygenase 2465258 5869995 PputGB1_2206 Pseudomonas putida GB-1 catechol 1,2-dioxygenase YP_001668443.1 2464323 D 76869 CDS YP_001668444.1 167033213 5869996 2465777..2466946 1 NC_010322.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: mmw:Mmwyl1_1823 acyl-CoA dehydrogenase type 2 domain; type 2 acyl-CoA dehydrogenase 2466946 5869996 PputGB1_2207 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001668444.1 2465777 D 76869 CDS YP_001668445.1 167033214 5869997 2466964..2467326 1 NC_010322.1 KEGG: mmw:Mmwyl1_1824 hypothetical protein; hypothetical protein 2467326 5869997 PputGB1_2208 Pseudomonas putida GB-1 hypothetical protein YP_001668445.1 2466964 D 76869 CDS YP_001668446.1 167033215 5869998 2467343..2468626 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: mmw:Mmwyl1_1826 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2468626 5869998 PputGB1_2209 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001668446.1 2467343 D 76869 CDS YP_001668447.1 167033216 5869999 2468623..2469102 1 NC_010322.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: rpb:RPB_3896 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 2469102 5869999 PputGB1_2210 Pseudomonas putida GB-1 aromatic-ring-hydroxylating dioxygenase subunit beta YP_001668447.1 2468623 D 76869 CDS YP_001668448.1 167033217 5870000 2469113..2469853 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmw:Mmwyl1_1828 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2469853 5870000 PputGB1_2211 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668448.1 2469113 D 76869 CDS YP_001668449.1 167033218 5870001 2469901..2470860 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mmw:Mmwyl1_1829 ferredoxin; ferredoxin 2470860 5870001 PputGB1_2212 Pseudomonas putida GB-1 ferredoxin YP_001668449.1 2469901 D 76869 CDS YP_001668450.1 167033219 5870002 2470872..2471369 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pfo:Pfl_0712 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 2471369 5870002 PputGB1_2213 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001668450.1 2470872 D 76869 CDS YP_001668451.1 167033220 5870003 complement(2471385..2471864) 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: mmw:Mmwyl1_1816 transcriptional regulator, MarR family; MarR family transcriptional regulator 2471864 5870003 PputGB1_2214 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001668451.1 2471385 R 76869 CDS YP_001668452.1 167033221 5870004 2472005..2473144 1 NC_010322.1 PFAM: Amidase; KEGG: xau:Xaut_1052 amidase; amidase 2473144 5870004 PputGB1_2215 Pseudomonas putida GB-1 amidase YP_001668452.1 2472005 D 76869 CDS YP_001668453.1 167033222 5870005 2473137..2473649 1 NC_010322.1 KEGG: mmw:Mmwyl1_1825 hypothetical protein; hypothetical protein 2473649 5870005 PputGB1_2216 Pseudomonas putida GB-1 hypothetical protein YP_001668453.1 2473137 D 76869 CDS YP_001668454.1 167033223 5870006 complement(2473801..2475120) 1 NC_010322.1 KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 2475120 5870006 PputGB1_2217 Pseudomonas putida GB-1 hypothetical protein YP_001668454.1 2473801 R 76869 CDS YP_001668455.1 167033224 5870007 complement(2475299..2475697) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: rpe:RPE_3768 cytochrome c, class I; cytochrome c class I 2475697 5870007 PputGB1_2218 Pseudomonas putida GB-1 cytochrome c class I YP_001668455.1 2475299 R 76869 CDS YP_001668456.1 167033225 5870008 complement(2475822..2476736) 1 NC_010322.1 activator of genes involved in phenylacetic acid catabolism; DNA-binding transcriptional activator FeaR 2476736 5870008 PputGB1_2219 Pseudomonas putida GB-1 DNA-binding transcriptional activator FeaR YP_001668456.1 2475822 R 76869 CDS YP_001668457.1 167033226 5870009 complement(2477061..2477579) 1 NC_010322.1 KEGG: mpt:Mpe_A2652 hypothetical protein; hypothetical protein 2477579 5870009 PputGB1_2220 Pseudomonas putida GB-1 hypothetical protein YP_001668457.1 2477061 R 76869 CDS YP_001668458.1 167033227 5870010 complement(2477584..2478105) 1 NC_010322.1 PFAM: methylamine dehydrogenase light chain domain protein; KEGG: pat:Patl_0157 twin-arginine translocation pathway signal; amine dehydrogenase 2478105 5870010 PputGB1_2221 Pseudomonas putida GB-1 amine dehydrogenase YP_001668458.1 2477584 R 76869 CDS YP_001668459.1 167033228 5870011 complement(2478120..2478761) 1 NC_010322.1 TIGRFAM: methylamine dehydrogenase accessory protein MauD; PFAM: Redoxin domain protein; KEGG: bam:Bamb_4470 methylamine dehydrogenase accessory protein MauD; methylamine dehydrogenase accessory protein MauD 2478761 5870011 PputGB1_2222 Pseudomonas putida GB-1 methylamine dehydrogenase accessory protein MauD YP_001668459.1 2478120 R 76869 CDS YP_001668460.1 167033229 5870012 complement(2478766..2479302) 1 NC_010322.1 PFAM: methylamine utilisation MauE; KEGG: azo:azo2259 putative methylamine utilization protein MauE; methylamine utilisation MauE 2479302 5870012 PputGB1_2223 Pseudomonas putida GB-1 methylamine utilisation MauE YP_001668460.1 2478766 R 76869 CDS YP_001668461.1 167033230 5870013 complement(2479318..2480469) 1 NC_010322.1 PFAM: methylamine dehydrogenase heavy subunit; KEGG: bam:Bamb_4472 amine dehydrogenase; amine dehydrogenase 2480469 5870013 PputGB1_2224 Pseudomonas putida GB-1 amine dehydrogenase YP_001668461.1 2479318 R 76869 CDS YP_001668462.1 167033231 5870014 2480672..2482159 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: bte:BTH_II0330 phenylacetaldehyde dehydrogenase; aldehyde dehydrogenase 2482159 5870014 PputGB1_2225 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668462.1 2480672 D 76869 CDS YP_001668463.1 167033232 5870015 2482263..2482757 1 NC_010322.1 KEGG: pen:PSEEN2309 hypothetical protein; hypothetical protein 2482757 5870015 PputGB1_2226 Pseudomonas putida GB-1 hypothetical protein YP_001668463.1 2482263 D 76869 CDS YP_001668464.1 167033233 5870016 2482894..2484990 1 NC_010322.1 KEGG: pen:PSEEN2310 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2484990 5870016 PputGB1_2227 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001668464.1 2482894 D 76869 CDS YP_001668465.1 167033234 5870017 complement(2485033..2485857) 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: pfl:PFL_5394 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2485857 5870017 PputGB1_2228 Pseudomonas putida GB-1 aldo/keto reductase YP_001668465.1 2485033 R 76869 CDS YP_001668466.1 167033235 5870018 2486104..2486982 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN2407 hypothetical protein; hypothetical protein 2486982 5870018 PputGB1_2229 Pseudomonas putida GB-1 hypothetical protein YP_001668466.1 2486104 D 76869 CDS YP_001668467.1 167033236 5870019 complement(2486994..2487896) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1962 transcriptional regulator, LysR family; LysR family transcriptional regulator 2487896 5870019 PputGB1_2230 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668467.1 2486994 R 76869 CDS YP_001668468.1 167033237 5870020 2488276..2490531 1 NC_010322.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pen:PSEEN2372 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 2490531 5870020 PputGB1_2231 Pseudomonas putida GB-1 catalase/peroxidase HPI YP_001668468.1 2488276 D 76869 CDS YP_001668469.1 167033238 5870021 2490793..2492004 1 NC_010322.1 PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; creatinase 2492004 5870021 PputGB1_2232 Pseudomonas putida GB-1 creatinase YP_001668469.1 2490793 D 76869 CDS YP_001668470.1 167033239 5870022 2492124..2493458 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1; general substrate transporter 2493458 5870022 PputGB1_2233 Pseudomonas putida GB-1 general substrate transporter YP_001668470.1 2492124 D 76869 CDS YP_001668471.1 167033240 5870023 complement(2493527..2494534) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pmy:Pmen_0490 transcriptional regulator, AraC family; AraC family transcriptional regulator 2494534 5870023 PputGB1_2234 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668471.1 2493527 R 76869 CDS YP_001668472.1 167033241 5870024 2494715..2496043 1 NC_010322.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2496043 pssA 5870024 pssA Pseudomonas putida GB-1 phosphatidylserine synthase YP_001668472.1 2494715 D 76869 CDS YP_001668473.1 167033242 5870025 complement(2496053..2497012) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3353 hypothetical protein; hypothetical protein 2497012 5870025 PputGB1_2236 Pseudomonas putida GB-1 hypothetical protein YP_001668473.1 2496053 R 76869 CDS YP_001668474.1 167033243 5870026 2497114..2498055 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3352 transcriptional regulator, LysR family; LysR family transcriptional regulator 2498055 5870026 PputGB1_2237 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668474.1 2497114 D 76869 CDS YP_001668475.1 167033244 5870027 complement(2498000..2498347) 1 NC_010322.1 KEGG: pap:PSPA7_3033 hypothetical protein; hypothetical protein 2498347 5870027 PputGB1_2238 Pseudomonas putida GB-1 hypothetical protein YP_001668475.1 2498000 R 76869 CDS YP_001668476.1 167033245 5870028 2498632..2499798 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfo:Pfl_2170 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 2499798 5870028 PputGB1_2239 Pseudomonas putida GB-1 diguanylate cyclase YP_001668476.1 2498632 D 76869 CDS YP_001668477.1 167033246 5870029 complement(2500586..2500906) 1 NC_010322.1 KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein 2500906 5870029 PputGB1_2240 Pseudomonas putida GB-1 hypothetical protein YP_001668477.1 2500586 R 76869 CDS YP_001668478.1 167033247 5870030 complement(2501003..2502376) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2055 decarboxylase; hypothetical protein 2502376 5870030 PputGB1_2241 Pseudomonas putida GB-1 hypothetical protein YP_001668478.1 2501003 R 76869 CDS YP_001668479.1 167033248 5870031 complement(2502539..2503600) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A1977 conserved hypothetical protein 698; hypothetical protein 2503600 5870031 PputGB1_2242 Pseudomonas putida GB-1 hypothetical protein YP_001668479.1 2502539 R 76869 CDS YP_001668480.1 167033249 5870032 2503711..2504619 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1978 transcriptional regulator, LysR family; LysR family transcriptional regulator 2504619 5870032 PputGB1_2243 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668480.1 2503711 D 76869 CDS YP_001668481.1 167033250 5870033 2504793..2505665 1 NC_010322.1 KEGG: ang:An14g06150 hypothetical protein Pfam: RHS_repeat UPF0126 PE D-aminoacyl_C; hypothetical protein 2505665 5870033 PputGB1_2244 Pseudomonas putida GB-1 hypothetical protein YP_001668481.1 2504793 D 76869 CDS YP_001668482.1 167033251 5870034 complement(2505737..2506666) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bbr:BB1891 hypothetical protein; hypothetical protein 2506666 5870034 PputGB1_2245 Pseudomonas putida GB-1 hypothetical protein YP_001668482.1 2505737 R 76869 CDS YP_001668483.1 167033252 5870035 complement(2506962..2507555) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pmy:Pmen_3469 transcriptional regulator, XRE family; XRE family transcriptional regulator 2507555 5870035 PputGB1_2246 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668483.1 2506962 R 76869 CDS YP_001668484.1 167033253 5870036 2507834..2509168 1 NC_010322.1 TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region; KEGG: pmy:Pmen_3468 glutamine synthetase, catalytic region; glutamine synthetase 2509168 5870036 PputGB1_2247 Pseudomonas putida GB-1 glutamine synthetase YP_001668484.1 2507834 D 76869 CDS YP_001668485.1 167033254 5870037 2509235..2510140 1 NC_010322.1 PFAM: glutamine amidotransferase class-II; KEGG: pmy:Pmen_3467 glutamine amidotransferase, class-II; glutamine amidotransferase 2510140 5870037 PputGB1_2248 Pseudomonas putida GB-1 glutamine amidotransferase YP_001668485.1 2509235 D 76869 CDS YP_001668486.1 167033255 5870038 2510168..2510842 1 NC_010322.1 PFAM: glutamate synthase alpha subunit domain protein; KEGG: pmy:Pmen_3466 glutamate synthase, alpha subunit domain protein; glutamate synthase subunit alpha 2510842 5870038 PputGB1_2249 Pseudomonas putida GB-1 glutamate synthase subunit alpha YP_001668486.1 2510168 D 76869 CDS YP_001668487.1 167033256 5870039 2510858..2512183 1 NC_010322.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: pmy:Pmen_3465 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 2512183 5870039 PputGB1_2250 Pseudomonas putida GB-1 ferredoxin-dependent glutamate synthase YP_001668487.1 2510858 D 76869 CDS YP_001668488.1 167033257 5870040 2512323..2513627 1 NC_010322.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pst:PSPTO_2586 ammonium transporter; ammonium transporter 2513627 5870040 PputGB1_2251 Pseudomonas putida GB-1 ammonium transporter YP_001668488.1 2512323 D 76869 CDS YP_001668489.1 167033258 5870041 complement(2513691..2515103) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3342 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease 2515103 5870041 PputGB1_2252 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001668489.1 2513691 R 76869 CDS YP_001668490.1 167033259 5870042 complement(2515455..2515907) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3341 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2515907 5870042 PputGB1_2253 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668490.1 2515455 R 76869 CDS YP_001668491.1 167033260 5870043 2516018..2516632 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3340 transporter, LysE family; lysine exporter protein LysE/YggA 2516632 5870043 PputGB1_2254 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668491.1 2516018 D 76869 CDS YP_001668492.1 167033261 5870044 2516699..2517331 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2025 transporter, LysE family; lysine exporter protein LysE/YggA 2517331 5870044 PputGB1_2255 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668492.1 2516699 D 76869 CDS YP_001668493.1 167033262 5870045 complement(2517353..2519536) 1 NC_010322.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2027 sensor histidine kinase/response regulator hybrid; GAF sensor hybrid histidine kinase 2519536 5870045 PputGB1_2256 Pseudomonas putida GB-1 GAF sensor hybrid histidine kinase YP_001668493.1 2517353 R 76869 CDS YP_001668494.1 167033263 5870046 complement(2519637..2520809) 1 NC_010322.1 KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; peptidyl-Asp metalloendopeptidase 2520809 5870046 PputGB1_2257 Pseudomonas putida GB-1 peptidyl-Asp metalloendopeptidase YP_001668494.1 2519637 R 76869 CDS YP_001668495.1 167033264 5870047 complement(2520893..2521456) 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2028 hydrolase, MutT/NUDIX family; NUDIX hydrolase 2521456 5870047 PputGB1_2258 Pseudomonas putida GB-1 NUDIX hydrolase YP_001668495.1 2520893 R 76869 CDS YP_001668496.1 167033265 5870048 complement(2521459..2522211) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2029 transcriptional regulator, GntR family; GntR family transcriptional regulator 2522211 5870048 PputGB1_2259 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668496.1 2521459 R 76869 CDS YP_001668497.1 167033266 5870049 complement(2522300..2522689) 1 NC_010322.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3235 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2522689 5870049 PputGB1_2260 Pseudomonas putida GB-1 carboxymuconolactone decarboxylase YP_001668497.1 2522300 R 76869 CDS YP_001668498.1 167033267 5870050 complement(2522778..2523263) 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2031 oxidoreductase; flavin reductase domain-containing protein 2523263 5870050 PputGB1_2261 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001668498.1 2522778 R 76869 CDS YP_001668499.1 167033268 5870051 complement(2523277..2524758) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2032 aldehyde dehydrogenase; aldehyde dehydrogenase 2524758 5870051 PputGB1_2262 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668499.1 2523277 R 76869 CDS YP_001668500.1 167033269 5870052 complement(2524755..2525588) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: pen:PSEEN2033 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2525588 5870052 PputGB1_2263 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001668500.1 2524755 R 76869 CDS YP_001668501.1 167033270 5870053 complement(2525657..2526253) 1 NC_010322.1 PFAM: protein of unknown function DUF1185; KEGG: pen:PSEEN2034 hypothetical protein; hypothetical protein 2526253 5870053 PputGB1_2264 Pseudomonas putida GB-1 hypothetical protein YP_001668501.1 2525657 R 76869 CDS YP_001668502.1 167033271 5870054 complement(2526558..2527598) 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pen:PSEEN2035 monooxygenase, bacterial luciferase family; luciferase family protein 2527598 5870054 PputGB1_2265 Pseudomonas putida GB-1 luciferase family protein YP_001668502.1 2526558 R 76869 CDS YP_001668503.1 167033272 5870055 complement(2527674..2528159) 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2036 oxidoreductase; flavin reductase domain-containing protein 2528159 5870055 PputGB1_2266 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001668503.1 2527674 R 76869 CDS YP_001668504.1 167033273 5870056 2528476..2529882 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN2038 permease, cytosine/purines, uracil, thiamine, allantoin permease family; cytosine/purines uracil thiamine allantoin permease 2529882 5870056 PputGB1_2267 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001668504.1 2528476 D 76869 CDS YP_001668505.1 167033274 5870057 complement(2529935..2531560) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2039 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2531560 5870057 PputGB1_2268 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001668505.1 2529935 R 76869 CDS YP_001668506.1 167033275 5870058 complement(2531792..2532988) 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2040 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2532988 5870058 PputGB1_2269 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001668506.1 2531792 R 76869 CDS YP_001668507.1 167033276 5870059 2533501..2534880 1 NC_010322.1 PFAM: flavin-containing monooxygenase FMO; KEGG: pmy:Pmen_3459 flavin-containing monooxygenase; flavin-containing monooxygenase FMO 2534880 5870059 PputGB1_2270 Pseudomonas putida GB-1 flavin-containing monooxygenase FMO YP_001668507.1 2533501 D 76869 CDS YP_001668508.1 167033277 5870060 2534998..2535537 1 NC_010322.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN2041 transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2535537 5870060 PputGB1_2271 Pseudomonas putida GB-1 BadM/Rrf2 family transcriptional regulator YP_001668508.1 2534998 D 76869 CDS YP_001668509.1 167033278 5870061 complement(2535563..2536474) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1921 transcriptional regulator, AraC family; AraC family transcriptional regulator 2536474 5870061 PputGB1_2272 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668509.1 2535563 R 76869 CDS YP_001668510.1 167033279 5870062 2536511..2537137 1 NC_010322.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1922 alkylhydroperoxidase, AhpD domain protein; alkylhydroperoxidase 2537137 5870062 PputGB1_2273 Pseudomonas putida GB-1 alkylhydroperoxidase YP_001668510.1 2536511 D 76869 CDS YP_001668511.1 167033280 5870063 2537237..2538301 1 NC_010322.1 KEGG: pen:PSEEN1923 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2538301 5870063 PputGB1_2274 Pseudomonas putida GB-1 acyl-CoA dehydrogenase YP_001668511.1 2537237 D 76869 CDS YP_001668512.1 167033281 5870064 2538298..2539119 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1924 ABC transporter, ATP-binding protein; ABC transporter-like protein 2539119 5870064 PputGB1_2275 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668512.1 2538298 D 76869 CDS YP_001668513.1 167033282 5870065 2539106..2540311 1 NC_010322.1 KEGG: pen:PSEEN1925 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein 2540311 5870065 PputGB1_2276 Pseudomonas putida GB-1 ABC transporter substrate-binding protein YP_001668513.1 2539106 D 76869 CDS YP_001668514.1 167033283 5870066 2540311..2541066 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1926 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2541066 5870066 PputGB1_2277 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668514.1 2540311 D 76869 CDS YP_001668515.1 167033284 5870067 complement(2541115..2541801) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1928 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2541801 5870067 PputGB1_2278 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001668515.1 2541115 R 76869 CDS YP_001668516.1 167033285 5870068 complement(2541882..2542823) 1 NC_010322.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 2542823 5870068 PputGB1_2279 Pseudomonas putida GB-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_001668516.1 2541882 R 76869 CDS YP_001668517.1 167033286 5870069 2542931..2543812 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1930 transcriptional regulator, LysR family; LysR family transcriptional regulator 2543812 5870069 PputGB1_2280 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668517.1 2542931 D 76869 CDS YP_001668518.1 167033287 5870070 complement(2543836..2544042) 1 NC_010322.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pen:PSEEN1931 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2544042 5870070 PputGB1_2281 Pseudomonas putida GB-1 4-oxalocrotonate tautomerase YP_001668518.1 2543836 R 76869 CDS YP_001668519.1 167033288 5870071 complement(2544061..2544795) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1932 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2544795 5870071 PputGB1_2282 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668519.1 2544061 R 76869 CDS YP_001668520.1 167033289 5870072 2544920..2545840 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1933 transcriptional regulator, LysR family; LysR family transcriptional regulator 2545840 5870072 PputGB1_2283 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668520.1 2544920 D 76869 CDS YP_001668521.1 167033290 5870073 2545935..2546207 1 NC_010322.1 KEGG: pen:PSEEN1934 hypothetical protein; hypothetical protein 2546207 5870073 PputGB1_2284 Pseudomonas putida GB-1 hypothetical protein YP_001668521.1 2545935 D 76869 CDS YP_001668522.1 167033291 5870074 complement(2546269..2546919) 1 NC_010322.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN1937 hypothetical protein; SH3 type 3 domain-containing protein 2546919 5870074 PputGB1_2285 Pseudomonas putida GB-1 SH3 type 3 domain-containing protein YP_001668522.1 2546269 R 76869 CDS YP_001668523.1 167033292 5870075 2547190..2548533 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 2548533 5870075 PputGB1_2286 Pseudomonas putida GB-1 outer membrane porin YP_001668523.1 2547190 D 76869 CDS YP_001668524.1 167033293 5870076 2548665..2549144 1 NC_010322.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pen:PSEEN2353 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 2549144 5870076 PputGB1_2287 Pseudomonas putida GB-1 3-demethylubiquinone-9 3-methyltransferase YP_001668524.1 2548665 D 76869 CDS YP_001668525.1 167033294 5870077 complement(2549230..2550978) 1 NC_010322.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: nca:Noca_2609 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 2550978 5870077 PputGB1_2288 Pseudomonas putida GB-1 choline/carnitine/betaine transporter YP_001668525.1 2549230 R 76869 CDS YP_001668526.1 167033295 5870078 2551295..2551612 1 NC_010322.1 hypothetical protein 2551612 5870078 PputGB1_2289 Pseudomonas putida GB-1 hypothetical protein YP_001668526.1 2551295 D 76869 CDS YP_001668527.1 167033296 5870079 2551621..2551821 1 NC_010322.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN3298 hypothetical protein; hypothetical protein 2551821 5870079 PputGB1_2290 Pseudomonas putida GB-1 hypothetical protein YP_001668527.1 2551621 D 76869 CDS YP_001668528.1 167033297 5870080 2551871..2552512 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2174 transporter, LysE family; lysine exporter protein LysE/YggA 2552512 5870080 PputGB1_2291 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668528.1 2551871 D 76869 CDS YP_001668529.1 167033298 5870081 2552720..2553508 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2979 hypothetical protein; extracellular solute-binding protein 2553508 5870081 PputGB1_2292 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668529.1 2552720 D 76869 CDS YP_001668530.1 167033299 5870082 complement(2553526..2554545) 1 NC_010322.1 PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN2169 hypothetical protein; hypothetical protein 2554545 5870082 PputGB1_2293 Pseudomonas putida GB-1 hypothetical protein YP_001668530.1 2553526 R 76869 CDS YP_001668531.1 167033300 5870083 complement(2554585..2555946) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2170 cytochrome c; gluconate 2-dehydrogenase 2555946 5870083 PputGB1_2294 Pseudomonas putida GB-1 gluconate 2-dehydrogenase YP_001668531.1 2554585 R 76869 CDS YP_001668532.1 167033301 5870084 complement(2555965..2558214) 1 NC_010322.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: pen:PSEEN2171 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 2558214 5870084 PputGB1_2295 Pseudomonas putida GB-1 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001668532.1 2555965 R 76869 CDS YP_001668533.1 167033302 5870085 complement(2558214..2558669) 1 NC_010322.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2172 isoquinoline 1-oxidoreductase, alpha subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2558669 5870085 PputGB1_2296 Pseudomonas putida GB-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001668533.1 2558214 R 76869 CDS YP_001668534.1 167033303 5870086 2558928..2561114 1 NC_010322.1 PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: pen:PSEEN3294 hypothetical protein; hypothetical protein 2561114 5870086 PputGB1_2297 Pseudomonas putida GB-1 hypothetical protein YP_001668534.1 2558928 D 76869 CDS YP_001668535.1 167033304 5870087 complement(2561138..2562028) 1 NC_010322.1 hypothetical protein 2562028 5870087 PputGB1_2298 Pseudomonas putida GB-1 hypothetical protein YP_001668535.1 2561138 R 76869 CDS YP_001668536.1 167033305 5870088 complement(2562031..2565021) 1 NC_010322.1 hypothetical protein 2565021 5870088 PputGB1_2299 Pseudomonas putida GB-1 hypothetical protein YP_001668536.1 2562031 R 76869 CDS YP_001668537.1 167033306 5870089 complement(2565324..2565614) 1 NC_010322.1 KEGG: pfo:Pfl_2311 hypothetical protein; hypothetical protein 2565614 5870089 PputGB1_2300 Pseudomonas putida GB-1 hypothetical protein YP_001668537.1 2565324 R 76869 CDS YP_001668538.1 167033307 5870090 2565779..2566207 1 NC_010322.1 KEGG: pst:PSPTO_3688 hypothetical protein; hypothetical protein 2566207 5870090 PputGB1_2301 Pseudomonas putida GB-1 hypothetical protein YP_001668538.1 2565779 D 76869 CDS YP_001668539.1 167033308 5870091 2566204..2567496 1 NC_010322.1 KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 2567496 5870091 PputGB1_2302 Pseudomonas putida GB-1 L-sorbosone dehydrogenase YP_001668539.1 2566204 D 76869 CDS YP_001668540.1 167033309 5870092 complement(2567564..2569696) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2610 putative ferrichrome-iron TonB-dependent receptor; TonB-dependent siderophore receptor 2569696 5870092 PputGB1_2303 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668540.1 2567564 R 76869 CDS YP_001668541.1 167033310 5870093 2569922..2570503 1 NC_010322.1 KEGG: pen:PSEEN2168 hypothetical protein; hypothetical protein 2570503 5870093 PputGB1_2304 Pseudomonas putida GB-1 hypothetical protein YP_001668541.1 2569922 D 76869 CDS YP_001668542.1 167033311 5870094 complement(2570508..2571272) 1 NC_010322.1 KEGG: dac:Daci_3654 hypothetical protein; hypothetical protein 2571272 5870094 PputGB1_2305 Pseudomonas putida GB-1 hypothetical protein YP_001668542.1 2570508 R 76869 CDS YP_001668543.1 167033312 5870095 2571475..2571993 1 NC_010322.1 PFAM: protein of unknown function DUF606; KEGG: dac:Daci_4323 protein of unknown function DUF606; hypothetical protein 2571993 5870095 PputGB1_2306 Pseudomonas putida GB-1 hypothetical protein YP_001668543.1 2571475 D 76869 CDS YP_001668544.1 167033313 5870096 complement(2571994..2572902) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_4324 transcriptional regulator, LysR family; LysR family transcriptional regulator 2572902 5870096 PputGB1_2307 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668544.1 2571994 R 76869 CDS YP_001668545.1 167033314 5870097 2573041..2574255 1 NC_010322.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pfl:PFL_6147 YeeE/YedE family protein; hypothetical protein 2574255 5870097 PputGB1_2308 Pseudomonas putida GB-1 hypothetical protein YP_001668545.1 2573041 D 76869 CDS YP_001668546.1 167033315 5870098 2574369..2575343 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_5626 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 2575343 5870098 PputGB1_2309 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001668546.1 2574369 D 76869 CDS YP_001668547.1 167033316 5870099 2575385..2576305 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2681 probable transcriptional regulator; LysR family transcriptional regulator 2576305 5870099 PputGB1_2310 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668547.1 2575385 D 76869 CDS YP_001668548.1 167033317 5870100 complement(2576385..2576714) 1 NC_010322.1 KEGG: pen:PSEEN2652 hypothetical protein; hypothetical protein 2576714 5870100 PputGB1_2311 Pseudomonas putida GB-1 hypothetical protein YP_001668548.1 2576385 R 76869 CDS YP_001668549.1 167033318 5870101 complement(2576789..2577439) 1 NC_010322.1 KEGG: pen:PSEEN2653 hypothetical protein; hypothetical protein 2577439 5870101 PputGB1_2312 Pseudomonas putida GB-1 hypothetical protein YP_001668549.1 2576789 R 76869 CDS YP_001668550.1 167033319 5870102 2577639..2578388 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2654 transcriptional regulator, GntR family; GntR family transcriptional regulator 2578388 5870102 PputGB1_2313 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001668550.1 2577639 D 76869 CDS YP_001668551.1 167033320 5870103 complement(2578459..2580039) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2655 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase 2580039 5870103 PputGB1_2314 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668551.1 2578459 R 76869 CDS YP_001668552.1 167033321 5870104 complement(2580131..2581684) 1 NC_010322.1 KEGG: pen:PSEEN2656 D-galactarate dehydrogenase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 2581684 5870104 PputGB1_2315 Pseudomonas putida GB-1 galactarate dehydratase YP_001668552.1 2580131 R 76869 CDS YP_001668553.1 167033322 5870105 complement(2581763..2583127) 1 NC_010322.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2657 D-galactonate permease; d-galactonate transporter 2583127 5870105 PputGB1_2316 Pseudomonas putida GB-1 d-galactonate transporter YP_001668553.1 2581763 R 76869 CDS YP_001668554.1 167033323 5870106 complement(2583232..2584143) 1 NC_010322.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 2584143 5870106 PputGB1_2317 Pseudomonas putida GB-1 5-dehydro-4-deoxyglucarate dehydratase YP_001668554.1 2583232 R 76869 CDS YP_001668555.1 167033324 5870107 complement(2584482..2585291) 1 NC_010322.1 PFAM: peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26 2585291 5870107 PputGB1_2318 Pseudomonas putida GB-1 peptidase C26 YP_001668555.1 2584482 R 76869 CDS YP_001668556.1 167033325 5870108 complement(2585750..2586532) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2663 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2586532 5870108 PputGB1_2319 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668556.1 2585750 R 76869 CDS YP_001668557.1 167033326 5870109 complement(2586555..2587799) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2664 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase 2587799 5870109 PputGB1_2320 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668557.1 2586555 R 76869 CDS YP_001668558.1 167033327 5870110 complement(2587816..2588526) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2665 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 2588526 5870110 PputGB1_2321 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001668558.1 2587816 R 76869 CDS YP_001668559.1 167033328 5870111 complement(2588523..2589242) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2666 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 2589242 5870111 PputGB1_2322 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001668559.1 2588523 R 76869 CDS YP_001668560.1 167033329 5870112 complement(2589416..2590168) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2667 amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 2590168 5870112 PputGB1_2323 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668560.1 2589416 R 76869 CDS YP_001668561.1 167033330 5870113 complement(2590191..2591063) 1 NC_010322.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN2668 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 2591063 5870113 PputGB1_2324 Pseudomonas putida GB-1 RpiR family transcriptional regulator YP_001668561.1 2590191 R 76869 CDS YP_001668562.1 167033331 5870114 2591205..2592230 1 NC_010322.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: pen:PSEEN2669 malate dehydrogenase; malate/L-lactate dehydrogenase 2592230 5870114 PputGB1_2325 Pseudomonas putida GB-1 malate/L-lactate dehydrogenase YP_001668562.1 2591205 D 76869 CDS YP_001668563.1 167033332 5870115 2592360..2593556 1 NC_010322.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2593556 5870115 PputGB1_2326 Pseudomonas putida GB-1 aromatic amino acid aminotransferase YP_001668563.1 2592360 D 76869 CDS YP_001668564.1 167033333 5870116 2593853..2595133 1 NC_010322.1 PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: pen:PSEEN2671 serine transport protein; aromatic amino acid permease 2595133 5870116 PputGB1_2327 Pseudomonas putida GB-1 aromatic amino acid permease YP_001668564.1 2593853 D 76869 CDS YP_001668565.1 167033334 5870117 2595301..2595801 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2672 thiol peroxidase; redoxin domain-containing protein 2595801 5870117 PputGB1_2328 Pseudomonas putida GB-1 redoxin domain-containing protein YP_001668565.1 2595301 D 76869 CDS YP_001668566.1 167033335 5870118 2596020..2597330 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: pen:PSEEN2673 multidrug resistance efflux pump; membrane fusion protein; RND family efflux transporter MFP subunit 2597330 5870118 PputGB1_2329 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001668566.1 2596020 D 76869 CDS YP_001668567.1 167033336 5870119 2597327..2600425 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2674 multidrug resistance efflux transporter; acriflavin resistance protein 2600425 5870119 PputGB1_2330 Pseudomonas putida GB-1 acriflavin resistance protein YP_001668567.1 2597327 D 76869 CDS YP_001668568.1 167033337 5870120 2600422..2603529 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2675 multidrug resistance efflux pump; acriflavin resistance protein 2603529 5870120 PputGB1_2331 Pseudomonas putida GB-1 acriflavin resistance protein YP_001668568.1 2600422 D 76869 CDS YP_001668569.1 167033338 5870121 2603526..2605016 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2676 outer membrane protein precursor; RND efflux system outer membrane lipoprotein 2605016 5870121 PputGB1_2332 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001668569.1 2603526 D 76869 CDS YP_001668570.1 167033339 5870122 2605283..2607370 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN2858 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2607370 5870122 PputGB1_2333 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001668570.1 2605283 D 76869 CDS YP_001668571.1 167033340 5870123 complement(2607367..2607627) 1 NC_010322.1 PFAM: protein of unknown function DUF1652; KEGG: pfl:PFL_3228 hypothetical protein; hypothetical protein 2607627 5870123 PputGB1_2334 Pseudomonas putida GB-1 hypothetical protein YP_001668571.1 2607367 R 76869 CDS YP_001668572.1 167033341 5870124 complement(2607898..2608545) 1 NC_010322.1 PFAM: protein of unknown function DUF1345; KEGG: pen:PSEEN3002 hypothetical protein; hypothetical protein 2608545 5870124 PputGB1_2335 Pseudomonas putida GB-1 hypothetical protein YP_001668572.1 2607898 R 76869 CDS YP_001668573.1 167033342 5870125 2608714..2610351 1 NC_010322.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2610351 5870125 PputGB1_2336 Pseudomonas putida GB-1 phosphoglucomutase YP_001668573.1 2608714 D 76869 CDS YP_001668574.1 167033343 5870126 2610430..2610942 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 2610942 5870126 PputGB1_2337 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001668574.1 2610430 D 76869 CDS YP_001668575.1 167033344 5870127 2610939..2611883 1 NC_010322.1 PFAM: FecR protein; KEGG: psp:PSPPH_2748 PupR protein; anti-FecI sigma factor FecR 2611883 5870127 PputGB1_2338 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001668575.1 2610939 D 76869 CDS YP_001668576.1 167033345 5870128 2611950..2614352 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_2749 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2614352 5870128 PputGB1_2339 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001668576.1 2611950 D 76869 CDS YP_001668577.1 167033346 5870129 2614634..2619460 1 NC_010322.1 KEGG: pen:PSEEN1853 hypothetical protein; hypothetical protein 2619460 5870129 PputGB1_2340 Pseudomonas putida GB-1 hypothetical protein YP_001668577.1 2614634 D 76869 CDS YP_001668578.1 167033347 5870131 complement(2620062..2621000) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1436 transcriptional regulator, LysR family; LysR family transcriptional regulator 2621000 5870131 PputGB1_2342 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668578.1 2620062 R 76869 CDS YP_001668579.1 167033348 5870132 2621149..2621976 1 NC_010322.1 PFAM: amidohydrolase 2; KEGG: pna:Pnap_1548 amidohydrolase 2; amidohydrolase 2 2621976 5870132 PputGB1_2343 Pseudomonas putida GB-1 amidohydrolase 2 YP_001668579.1 2621149 D 76869 CDS YP_001668580.1 167033349 5870133 2622019..2623368 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_A0581 probable glucarate transporter; major facilitator superfamily transporter 2623368 5870133 PputGB1_2344 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668580.1 2622019 D 76869 CDS YP_001668581.1 167033350 5870134 2623365..2624105 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_0784 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2624105 5870134 PputGB1_2345 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668581.1 2623365 D 76869 CDS YP_001668582.1 167033351 5870135 2624102..2624932 1 NC_010322.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll6916 hypothetical protein; xylose isomerase domain-containing protein 2624932 5870135 PputGB1_2346 Pseudomonas putida GB-1 xylose isomerase domain-containing protein YP_001668582.1 2624102 D 76869 CDS YP_001668583.1 167033352 5870136 complement(2624923..2625339) 1 NC_010322.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2647 hypothetical protein; endoribonuclease L-PSP 2625339 5870136 PputGB1_2347 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001668583.1 2624923 R 76869 CDS YP_001668584.1 167033353 5870137 complement(2625339..2626658) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2648 oxidoreductase, PNDR family (class II); FAD dependent oxidoreductase 2626658 5870137 PputGB1_2348 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668584.1 2625339 R 76869 CDS YP_001668585.1 167033354 5870138 2626962..2627639 1 NC_010322.1 PFAM: protein of unknown function DUF1028; KEGG: pen:PSEEN2649 hypothetical protein; hypothetical protein 2627639 5870138 PputGB1_2349 Pseudomonas putida GB-1 hypothetical protein YP_001668585.1 2626962 D 76869 CDS YP_001668586.1 167033355 5870139 2627632..2628792 1 NC_010322.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2628792 5870139 PputGB1_2350 Pseudomonas putida GB-1 acetylornithine deacetylase YP_001668586.1 2627632 D 76869 CDS YP_001668587.1 167033356 5870140 complement(2628851..2630119) 1 NC_010322.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pfo:Pfl_2711 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 2630119 5870140 PputGB1_2351 Pseudomonas putida GB-1 carbohydrate-selective porin OprB YP_001668587.1 2628851 R 76869 CDS YP_001668588.1 167033357 5870141 complement(2630228..2632645) 1 NC_010322.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN2918 quinate dehydrogenase (pyrroloquinoline-quinone); PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 2632645 5870141 PputGB1_2352 Pseudomonas putida GB-1 PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein YP_001668588.1 2630228 R 76869 CDS YP_001668589.1 167033358 5870142 complement(2632878..2633228) 1 NC_010322.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2914 hypothetical protein; cupin 2633228 5870142 PputGB1_2353 Pseudomonas putida GB-1 cupin YP_001668589.1 2632878 R 76869 CDS YP_001668590.1 167033359 5870143 2633345..2634250 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2913 transcriptional regulator, LysR family; LysR family transcriptional regulator 2634250 5870143 PputGB1_2354 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668590.1 2633345 D 76869 CDS YP_001668591.1 167033360 5870144 2634353..2635552 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2912 transporter, MFS superfamily; major facilitator superfamily transporter 2635552 5870144 PputGB1_2355 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668591.1 2634353 D 76869 CDS YP_001668592.1 167033361 5870145 complement(2635565..2636176) 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2911 transporter, LysE family; lysine exporter protein LysE/YggA 2636176 5870145 PputGB1_2356 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668592.1 2635565 R 76869 CDS YP_001668593.1 167033362 5870146 2636279..2637277 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2910 transcriptional regulator, AraC family; AraC family transcriptional regulator 2637277 5870146 PputGB1_2357 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668593.1 2636279 D 76869 CDS YP_001668594.1 167033363 5870147 complement(2637244..2638095) 1 NC_010322.1 PFAM: SCP-like extracellular; KEGG: pen:PSEEN2909 hypothetical protein; hypothetical protein 2638095 5870147 PputGB1_2358 Pseudomonas putida GB-1 hypothetical protein YP_001668594.1 2637244 R 76869 CDS YP_001668595.1 167033364 5870148 complement(2638302..2638913) 1 NC_010322.1 PFAM: cell wall hydrolase SleB; KEGG: pen:PSEEN2908 hypothetical protein; cell wall hydrolase SleB 2638913 5870148 PputGB1_2359 Pseudomonas putida GB-1 cell wall hydrolase SleB YP_001668595.1 2638302 R 76869 CDS YP_001668596.1 167033365 5870149 complement(2638948..2639865) 1 NC_010322.1 PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN2907 hypothetical protein; auxin efflux carrier 2639865 5870149 PputGB1_2360 Pseudomonas putida GB-1 auxin efflux carrier YP_001668596.1 2638948 R 76869 CDS YP_001668597.1 167033366 5870150 complement(2639972..2640835) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2455 transcriptional regulator, LysR family; LysR family transcriptional regulator 2640835 5870150 PputGB1_2361 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668597.1 2639972 R 76869 CDS YP_001668598.1 167033367 5870151 complement(2640906..2641754) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2456 amino acid transporter permease protein; binding-protein-dependent transport system inner membrane protein 2641754 5870151 PputGB1_2362 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668598.1 2640906 R 76869 CDS YP_001668599.1 167033368 5870152 complement(2641751..2642767) 1 NC_010322.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN2457 amino acid transporter, periplasmic amino acid-binding protein; substrate-binding region of ABC-type glycine betaine transport system 2642767 5870152 PputGB1_2363 Pseudomonas putida GB-1 substrate-binding region of ABC-type glycine betaine transport system YP_001668599.1 2641751 R 76869 CDS YP_001668600.1 167033369 5870153 2642930..2644834 1 NC_010322.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: plu:plu2820 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin 2644834 5870153 PputGB1_2364 Pseudomonas putida GB-1 peptidase S8/S53 subtilisin kexin sedolisin YP_001668600.1 2642930 D 76869 CDS YP_001668601.1 167033370 5870154 complement(2644867..2647011) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2997 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2647011 5870154 PputGB1_2365 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001668601.1 2644867 R 76869 CDS YP_001668602.1 167033371 5870155 2647210..2648529 1 NC_010322.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2996 Na+/H+ antiporter, NahC family; Na+/H+ antiporter NhaC 2648529 5870155 PputGB1_2366 Pseudomonas putida GB-1 Na+/H+ antiporter NhaC YP_001668602.1 2647210 D 76869 CDS YP_001668603.1 167033372 5870156 complement(2648543..2649550) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN2995 transmembrane sensor, FecR family; anti-FecI sigma factor FecR 2649550 5870156 PputGB1_2367 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001668603.1 2648543 R 76869 CDS YP_001668604.1 167033373 5870157 complement(2649822..2651591) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_3819 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2651591 5870157 PputGB1_2368 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001668604.1 2649822 R 76869 CDS YP_001668605.1 167033374 5870158 complement(2651662..2653284) 1 NC_010322.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2653284 5870158 PputGB1_2369 Pseudomonas putida GB-1 acyl-CoA synthetase YP_001668605.1 2651662 R 76869 CDS YP_001668606.1 167033375 5870159 2653479..2654885 1 NC_010322.1 KEGG: pmy:Pmen_3816 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2654885 5870159 PputGB1_2370 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001668606.1 2653479 D 76869 CDS YP_001668607.1 167033376 5870160 2654898..2655527 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pmy:Pmen_3815 response regulator receiver protein; two component LuxR family transcriptional regulator 2655527 5870160 PputGB1_2371 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001668607.1 2654898 D 76869 CDS YP_001668608.1 167033377 5870161 2655663..2656136 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN2994 transcriptional regulator, MarR family; MarR family transcriptional regulator 2656136 5870161 PputGB1_2372 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001668608.1 2655663 D 76869 CDS YP_001668609.1 167033378 5870162 2656167..2657354 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2993 HlyD family secretion protein; secretion protein HlyD family protein 2657354 5870162 PputGB1_2373 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001668609.1 2656167 D 76869 CDS YP_001668610.1 167033379 5870163 2657351..2658886 1 NC_010322.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2992 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 2658886 5870163 PputGB1_2374 Pseudomonas putida GB-1 EmrB/QacA family drug resistance transporter YP_001668610.1 2657351 D 76869 CDS YP_001668611.1 167033380 5870164 2659287..2659706 1 NC_010322.1 KEGG: smg:SMGWSS_010 putative ribosomal protein S1; 30S ribosomal protein S1 2659706 5870164 PputGB1_2375 Pseudomonas putida GB-1 30S ribosomal protein S1 YP_001668611.1 2659287 D 76869 CDS YP_001668612.1 167033381 5870165 2659778..2660524 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2990 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2660524 5870165 PputGB1_2376 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668612.1 2659778 D 76869 CDS YP_001668613.1 167033382 5870166 complement(2660534..2662600) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase 2662600 5870166 PputGB1_2377 Pseudomonas putida GB-1 PAS/PAC sensor hybrid histidine kinase YP_001668613.1 2660534 R 76869 CDS YP_001668614.1 167033383 5870167 complement(2662664..2664319) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase 2664319 5870167 PputGB1_2378 Pseudomonas putida GB-1 PAS/PAC sensor hybrid histidine kinase YP_001668614.1 2662664 R 76869 CDS YP_001668615.1 167033384 5870168 complement(2664377..2665786) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2988 transcriptional regulator, GntR family; transcriptional regulator 2665786 5870168 PputGB1_2379 Pseudomonas putida GB-1 transcriptional regulator YP_001668615.1 2664377 R 76869 CDS YP_001668616.1 167033385 5870169 complement(2665837..2667240) 1 NC_010322.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN2987 iron-sulfur cluster-binding protein; cytochrome c oxidase accessory protein CcoG 2667240 5870169 PputGB1_2380 Pseudomonas putida GB-1 cytochrome c oxidase accessory protein CcoG YP_001668616.1 2665837 R 76869 CDS YP_001668617.1 167033386 5870170 complement(2667362..2667601) 1 NC_010322.1 KEGG: pfl:PFL_2870 hypothetical protein; hypothetical protein 2667601 5870170 PputGB1_2381 Pseudomonas putida GB-1 hypothetical protein YP_001668617.1 2667362 R 76869 CDS YP_001668618.1 167033387 5870171 2667705..2668259 1 NC_010322.1 PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN2986 transporter, MgtC family; MgtC/SapB transporter 2668259 5870171 PputGB1_2382 Pseudomonas putida GB-1 MgtC/SapB transporter YP_001668618.1 2667705 D 76869 CDS YP_001668619.1 167033388 5870173 complement(2668792..2669691) 1 NC_010322.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 2669691 5870173 PputGB1_2384 Pseudomonas putida GB-1 hydroxymethylglutaryl-CoA lyase YP_001668619.1 2668792 R 76869 CDS YP_001668620.1 167033389 5870174 complement(2669711..2670109) 1 NC_010322.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN2982 transcriptional regulator, MerR family; MerR family transcriptional regulator 2670109 5870174 PputGB1_2385 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001668620.1 2669711 R 76869 CDS YP_001668621.1 167033390 5870175 complement(2670183..2671061) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3049 transcriptional regulator PobR; AraC family transcriptional regulator 2671061 5870175 PputGB1_2386 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668621.1 2670183 R 76869 CDS YP_001668622.1 167033391 5870176 2671235..2672422 1 NC_010322.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2672422 5870176 PputGB1_2387 Pseudomonas putida GB-1 4-hydroxybenzoate 3-monooxygenase YP_001668622.1 2671235 D 76869 CDS YP_001668623.1 167033392 5870177 complement(2672466..2673119) 1 NC_010322.1 PFAM: Ankyrin; KEGG: reh:H16_B0798 ankyrin repeat protein containing four repeats; ankyrin 2673119 5870177 PputGB1_2388 Pseudomonas putida GB-1 ankyrin YP_001668623.1 2672466 R 76869 CDS YP_001668624.1 167033393 5870178 2673236..2675026 1 NC_010322.1 KEGG: pfl:PFL_5184 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2675026 5870178 PputGB1_2389 Pseudomonas putida GB-1 gamma-glutamyltransferase YP_001668624.1 2673236 D 76869 CDS YP_001668625.1 167033394 5870179 2675071..2675952 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 2675952 5870179 PputGB1_2390 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668625.1 2675071 D 76869 CDS YP_001668626.1 167033395 5870180 complement(2676129..2677046) 1 NC_010322.1 KEGG: rso:RS00362 hypothetical protein; hypothetical protein 2677046 5870180 PputGB1_2391 Pseudomonas putida GB-1 hypothetical protein YP_001668626.1 2676129 R 76869 CDS YP_001668627.1 167033396 5870181 complement(2677118..2678170) 1 NC_010322.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2678170 5870181 PputGB1_2392 Pseudomonas putida GB-1 ornithine cyclodeaminase YP_001668627.1 2677118 R 76869 CDS YP_001668628.1 167033397 5870182 2678354..2678776 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: rme:Rmet_5648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2678776 5870182 PputGB1_2393 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668628.1 2678354 D 76869 CDS YP_001668629.1 167033398 5870183 2679120..2680538 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pfl:PFL_3642 D-serine/D-alanine/glycine transporter; amino acid permease-associated protein 2680538 5870183 PputGB1_2394 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668629.1 2679120 D 76869 CDS YP_001668630.1 167033399 5870184 complement(2680574..2681173) 1 NC_010322.1 PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN2926 hypothetical protein; lipid-binding START domain-containing protein 2681173 5870184 PputGB1_2395 Pseudomonas putida GB-1 lipid-binding START domain-containing protein YP_001668630.1 2680574 R 76869 CDS YP_001668631.1 167033400 5870185 complement(2681264..2682100) 1 NC_010322.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2925 hypothetical protein; hypothetical protein 2682100 5870185 PputGB1_2396 Pseudomonas putida GB-1 hypothetical protein YP_001668631.1 2681264 R 76869 CDS YP_001668632.1 167033401 5870186 complement(2682207..2683598) 1 NC_010322.1 KEGG: bte:BTH_II1741 monoxygenase; monoxygenase 2683598 5870186 PputGB1_2397 Pseudomonas putida GB-1 monoxygenase YP_001668632.1 2682207 R 76869 CDS YP_001668633.1 167033402 5870187 complement(2683615..2684595) 1 NC_010322.1 KEGG: mms:mma_3465 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2684595 5870187 PputGB1_2398 Pseudomonas putida GB-1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001668633.1 2683615 R 76869 CDS YP_001668634.1 167033403 5870188 2684793..2685677 1 NC_010322.1 KEGG: pen:PSEEN2922 hypothetical protein; hypothetical protein 2685677 5870188 PputGB1_2399 Pseudomonas putida GB-1 hypothetical protein YP_001668634.1 2684793 D 76869 CDS YP_001668635.1 167033404 5870189 complement(2685685..2686569) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr2632 hypothetical protein; hypothetical protein 2686569 5870189 PputGB1_2400 Pseudomonas putida GB-1 hypothetical protein YP_001668635.1 2685685 R 76869 CDS YP_001668636.1 167033405 5870190 2686741..2687412 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2015 transcriptional regulator, TetR family; TetR family transcriptional regulator 2687412 5870190 PputGB1_2401 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668636.1 2686741 D 76869 CDS YP_001668637.1 167033406 5870191 complement(2687420..2688529) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2335 transcriptional regulator, AraC family; AraC family transcriptional regulator 2688529 5870191 PputGB1_2402 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668637.1 2687420 R 76869 CDS YP_001668638.1 167033407 5870192 2688649..2688861 1 NC_010322.1 KEGG: pen:PSEEN2759 hypothetical protein; hypothetical protein 2688861 5870192 PputGB1_2403 Pseudomonas putida GB-1 hypothetical protein YP_001668638.1 2688649 D 76869 CDS YP_001668639.1 167033408 5870193 complement(2688906..2689232) 1 NC_010322.1 hypothetical protein 2689232 5870193 PputGB1_2404 Pseudomonas putida GB-1 hypothetical protein YP_001668639.1 2688906 R 76869 CDS YP_001668640.1 167033409 5870194 2689422..2689832 1 NC_010322.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2338 hypothetical protein; endoribonuclease L-PSP 2689832 5870194 PputGB1_2405 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001668640.1 2689422 D 76869 CDS YP_001668641.1 167033410 5870195 2689942..2690814 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_1087 protein of unknown function DUF6, transmembrane; hypothetical protein 2690814 5870195 PputGB1_2406 Pseudomonas putida GB-1 hypothetical protein YP_001668641.1 2689942 D 76869 CDS YP_001668642.1 167033411 5870196 complement(2690811..2691530) 1 NC_010322.1 KEGG: pfo:Pfl_1444 hypothetical protein; hypothetical protein 2691530 5870196 PputGB1_2407 Pseudomonas putida GB-1 hypothetical protein YP_001668642.1 2690811 R 76869 CDS YP_001668643.1 167033412 5870197 complement(2691612..2691863) 1 NC_010322.1 KEGG: pen:PSEEN3318 lipoprotein; lipoprotein 2691863 5870197 PputGB1_2408 Pseudomonas putida GB-1 lipoprotein YP_001668643.1 2691612 R 76869 CDS YP_001668644.1 167033413 5870198 2691994..2692653 1 NC_010322.1 KEGG: smd:Smed_5191 hypothetical protein; hypothetical protein 2692653 5870198 PputGB1_2409 Pseudomonas putida GB-1 hypothetical protein YP_001668644.1 2691994 D 76869 CDS YP_001668645.1 167033414 5870199 2692818..2694287 1 NC_010322.1 KEGG: pfo:Pfl_1376 hypothetical protein; hypothetical protein 2694287 5870199 PputGB1_2410 Pseudomonas putida GB-1 hypothetical protein YP_001668645.1 2692818 D 76869 CDS YP_001668646.1 167033415 5870200 2694284..2695177 1 NC_010322.1 KEGG: pfo:Pfl_1375 hypothetical protein; hypothetical protein 2695177 5870200 PputGB1_2411 Pseudomonas putida GB-1 hypothetical protein YP_001668646.1 2694284 D 76869 CDS YP_001668647.1 167033416 5870201 complement(2695259..2696215) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_2731 transcriptional regulator, AraC family; AraC family transcriptional regulator 2696215 5870201 PputGB1_2412 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668647.1 2695259 R 76869 CDS YP_001668648.1 167033417 5870202 complement(2696364..2698448) 1 NC_010322.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pfl:PFL_2732 hydantoin utilization protein A; 5-oxoprolinase 2698448 5870202 PputGB1_2413 Pseudomonas putida GB-1 5-oxoprolinase YP_001668648.1 2696364 R 76869 CDS YP_001668649.1 167033418 5870203 complement(2698462..2700207) 1 NC_010322.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: pfl:PFL_2733 hydantoin utilization protein B; hydantoinase B/oxoprolinase 2700207 5870203 PputGB1_2414 Pseudomonas putida GB-1 hydantoinase B/oxoprolinase YP_001668649.1 2698462 R 76869 CDS YP_001668650.1 167033419 5870204 complement(2700397..2701251) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1223 putative LysR-family transcriptional regulatory protein; LysR family transcriptional regulator 2701251 5870204 PputGB1_2415 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668650.1 2700397 R 76869 CDS YP_001668651.1 167033420 5870205 2701344..2701772 1 NC_010322.1 PFAM: transmembrane pair domain protein; KEGG: spe:Spro_3410 transmembrane pair domain protein; transmembrane pair domain-containing protein 2701772 5870205 PputGB1_2416 Pseudomonas putida GB-1 transmembrane pair domain-containing protein YP_001668651.1 2701344 D 76869 CDS YP_001668652.1 167033421 5870206 complement(2701846..2702865) 1 NC_010322.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2702865 5870206 PputGB1_2417 Pseudomonas putida GB-1 branched-chain amino acid aminotransferase YP_001668652.1 2701846 R 76869 CDS YP_001668653.1 167033422 5870207 complement(2703012..2704589) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_46010 putative ATP-binding component of ABC transporter; ABC transporter-like protein 2704589 5870207 PputGB1_2418 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668653.1 2703012 R 76869 CDS YP_001668654.1 167033423 5870208 complement(2704761..2705123) 1 NC_010322.1 KEGG: pen:PSEEN2091 hypothetical protein; hypothetical protein 2705123 5870208 PputGB1_2419 Pseudomonas putida GB-1 hypothetical protein YP_001668654.1 2704761 R 76869 CDS YP_001668655.1 167033424 5870209 complement(2705120..2705497) 1 NC_010322.1 KEGG: pen:PSEEN2092 hypothetical protein; hypothetical protein 2705497 5870209 PputGB1_2420 Pseudomonas putida GB-1 hypothetical protein YP_001668655.1 2705120 R 76869 CDS YP_001668656.1 167033425 5870210 2705917..2706984 1 NC_010322.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN2432 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 2706984 5870210 PputGB1_2421 Pseudomonas putida GB-1 cobalamin biosynthesis protein CobW YP_001668656.1 2705917 D 76869 CDS YP_001668657.1 167033426 5870211 2706988..2710749 1 NC_010322.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2710749 cobN 5870211 cobN Pseudomonas putida GB-1 cobaltochelatase subunit CobN YP_001668657.1 2706988 D 76869 CDS YP_001668658.1 167033427 5870212 2710751..2711773 1 NC_010322.1 KEGG: pen:PSEEN2434 magnesium chelatase, subunit ChII; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase 2711773 5870212 PputGB1_2423 Pseudomonas putida GB-1 magnesium chelatase YP_001668658.1 2710751 D 76869 CDS YP_001668659.1 167033428 5870213 2711875..2712441 1 NC_010322.1 KEGG: pen:PSEEN2435 hypothetical protein; hypothetical protein 2712441 5870213 PputGB1_2424 Pseudomonas putida GB-1 hypothetical protein YP_001668659.1 2711875 D 76869 CDS YP_001668660.1 167033429 5870214 complement(2712548..2712814) 1 NC_010322.1 KEGG: pen:PSEEN2436 hypothetical protein; hypothetical protein 2712814 5870214 PputGB1_2425 Pseudomonas putida GB-1 hypothetical protein YP_001668660.1 2712548 R 76869 CDS YP_001668661.1 167033430 5870215 2713157..2714482 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN2438 sigma-54 dependent transcriptional regulator; sigma-54 dependent trancsriptional regulator 2714482 5870215 PputGB1_2426 Pseudomonas putida GB-1 sigma-54 dependent trancsriptional regulator YP_001668661.1 2713157 D 76869 CDS YP_001668662.1 167033431 5870216 2714683..2715825 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC; RND family efflux transporter MFP subunit 2715825 5870216 PputGB1_2427 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001668662.1 2714683 D 76869 CDS YP_001668663.1 167033432 5870217 2715841..2718972 1 NC_010322.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN3124 multidrug efflux pump MexD (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein 2718972 5870217 PputGB1_2428 Pseudomonas putida GB-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001668663.1 2715841 D 76869 CDS YP_001668664.1 167033433 5870218 2718972..2720375 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3123 outer membrane protein OprJ precursor; RND efflux system outer membrane lipoprotein 2720375 5870218 PputGB1_2429 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001668664.1 2718972 D 76869 CDS YP_001668665.1 167033434 5870219 complement(2720464..2721021) 1 NC_010322.1 PFAM: regulatory protein LacI; KEGG: pen:PSEEN3061 transcriptional regulator NfxB; regulatory protein LacI 2721021 5870219 PputGB1_2430 Pseudomonas putida GB-1 regulatory protein LacI YP_001668665.1 2720464 R 76869 CDS YP_001668666.1 167033435 5870220 complement(2721201..2723174) 1 NC_010322.1 PFAM: peptidase U32; KEGG: pen:PSEEN3060 peptidase, U32 family; peptidase U32 2723174 5870220 PputGB1_2431 Pseudomonas putida GB-1 peptidase U32 YP_001668666.1 2721201 R 76869 CDS YP_001668667.1 167033436 5870221 complement(2723329..2723709) 1 NC_010322.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2383 endoribonuclease, L-PSP family; endoribonuclease L-PSP 2723709 5870221 PputGB1_2432 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001668667.1 2723329 R 76869 CDS YP_001668668.1 167033437 5870222 2723784..2724539 1 NC_010322.1 PFAM: protein of unknown function DUF633; KEGG: pen:PSEEN2384 hypothetical protein; hypothetical protein 2724539 5870222 PputGB1_2433 Pseudomonas putida GB-1 hypothetical protein YP_001668668.1 2723784 D 76869 CDS YP_001668669.1 167033438 5870223 complement(2724541..2724801) 1 NC_010322.1 KEGG: pen:PSEEN2386 hypothetical protein; hypothetical protein 2724801 5870223 PputGB1_2434 Pseudomonas putida GB-1 hypothetical protein YP_001668669.1 2724541 R 76869 CDS YP_001668670.1 167033439 5870224 2724926..2725858 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2387 transcriptional regulator, LysR family; LysR family transcriptional regulator 2725858 5870224 PputGB1_2435 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668670.1 2724926 D 76869 CDS YP_001668671.1 167033440 5870225 complement(2726003..2727154) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN2889 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2727154 5870225 PputGB1_2436 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001668671.1 2726003 R 76869 CDS YP_001668672.1 167033441 5870226 complement(2727171..2728241) 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2888 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 2728241 5870226 PputGB1_2437 Pseudomonas putida GB-1 enoyl-CoA hydratase/isomerase YP_001668672.1 2727171 R 76869 CDS YP_001668673.1 167033442 5870227 2728497..2730158 1 NC_010322.1 TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: psa:PST_4120 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha 2730158 5870227 PputGB1_2438 Pseudomonas putida GB-1 malonate decarboxylase subunit alpha YP_001668673.1 2728497 D 76869 CDS YP_001668674.1 167033443 5870228 2730158..2731063 1 NC_010322.1 catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 2731063 5870228 PputGB1_2439 Pseudomonas putida GB-1 triphosphoribosyl-dephospho-CoA synthase YP_001668674.1 2730158 D 76869 CDS YP_001668675.1 167033444 5870229 2731065..2731364 1 NC_010322.1 acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 2731364 5870229 PputGB1_2440 Pseudomonas putida GB-1 malonate decarboxylase subunit delta YP_001668675.1 2731065 D 76869 CDS YP_001668676.1 167033445 5870230 2731357..2732205 1 NC_010322.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 2732205 5870230 PputGB1_2441 Pseudomonas putida GB-1 malonate decarboxylase subunit beta YP_001668676.1 2731357 D 76869 CDS YP_001668677.1 167033446 5870231 2732202..2732993 1 NC_010322.1 TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: psa:PST_4116 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 2732993 5870231 PputGB1_2442 Pseudomonas putida GB-1 malonate decarboxylase subunit gamma YP_001668677.1 2732202 D 76869 CDS YP_001668678.1 167033447 5870232 2732995..2733609 1 NC_010322.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 2733609 5870232 PputGB1_2443 Pseudomonas putida GB-1 phosphoribosyl-dephospho-CoA transferase YP_001668678.1 2732995 D 76869 CDS YP_001668679.1 167033448 5870233 2733606..2734526 1 NC_010322.1 TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: psa:PST_4114 malonyl CoA-acyl carrier protein transacylase; malonate decarboxylasesubunit epsilon 2734526 5870233 PputGB1_2444 Pseudomonas putida GB-1 malonate decarboxylasesubunit epsilon YP_001668679.1 2733606 D 76869 CDS YP_001668680.1 167033449 5870234 2734627..2735049 1 NC_010322.1 TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: pfl:PFL_5813 malonate transporter, MadL subunit; malonate transporter subunit MadL 2735049 5870234 PputGB1_2445 Pseudomonas putida GB-1 malonate transporter subunit MadL YP_001668680.1 2734627 D 76869 CDS YP_001668681.1 167033450 5870235 2735052..2735816 1 NC_010322.1 TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: pfl:PFL_5812 malonate transporter, MadM subunit; malonate transporter subunit MadM 2735816 5870235 PputGB1_2446 Pseudomonas putida GB-1 malonate transporter subunit MadM YP_001668681.1 2735052 D 76869 CDS YP_001668682.1 167033451 5870236 2736013..2741847 1 NC_010322.1 KEGG: pen:PSEEN2857 hypothetical protein; hypothetical protein 2741847 5870236 PputGB1_2447 Pseudomonas putida GB-1 hypothetical protein YP_001668682.1 2736013 D 76869 CDS YP_001668683.1 167033452 5870237 2741866..2743842 1 NC_010322.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pen:PSEEN2854 hypothetical protein; hypothetical protein 2743842 5870237 PputGB1_2448 Pseudomonas putida GB-1 hypothetical protein YP_001668683.1 2741866 D 76869 CDS YP_001668684.1 167033453 5870238 2743839..2744495 1 NC_010322.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein; electron transport protein SCO1/SenC 2744495 5870238 PputGB1_2449 Pseudomonas putida GB-1 electron transport protein SCO1/SenC YP_001668684.1 2743839 D 76869 CDS YP_001668685.1 167033454 5870239 2744492..2745157 1 NC_010322.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2852 SCO1/SenC family protein; electron transport protein SCO1/SenC 2745157 5870239 PputGB1_2450 Pseudomonas putida GB-1 electron transport protein SCO1/SenC YP_001668685.1 2744492 D 76869 CDS YP_001668686.1 167033455 5870240 2745163..2746839 1 NC_010322.1 KEGG: pen:PSEEN2851 cytochrome c; cytochrome c 2746839 5870240 PputGB1_2451 Pseudomonas putida GB-1 cytochrome c YP_001668686.1 2745163 D 76869 CDS YP_001668687.1 167033456 5870241 2746852..2747493 1 NC_010322.1 PFAM: SurA domain; KEGG: pen:PSEEN2850 hypothetical protein; SurA domain-containing protein 2747493 5870241 PputGB1_2452 Pseudomonas putida GB-1 SurA domain-containing protein YP_001668687.1 2746852 D 76869 CDS YP_001668688.1 167033457 5870242 2747746..2748276 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN2849 response regulator; response regulator receiver protein 2748276 5870242 PputGB1_2453 Pseudomonas putida GB-1 response regulator receiver protein YP_001668688.1 2747746 D 76869 CDS YP_001668689.1 167033458 5870243 2748337..2750010 1 NC_010322.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN2848 type II secretion system protein E; type II secretion system protein E 2750010 5870243 PputGB1_2454 Pseudomonas putida GB-1 type II secretion system protein E YP_001668689.1 2748337 D 76869 CDS YP_001668690.1 167033459 5870244 2749994..2750773 1 NC_010322.1 KEGG: pen:PSEEN2847 hypothetical protein; hypothetical protein 2750773 5870244 PputGB1_2455 Pseudomonas putida GB-1 hypothetical protein YP_001668690.1 2749994 D 76869 CDS YP_001668691.1 167033460 5870245 2750775..2751317 1 NC_010322.1 KEGG: pen:PSEEN2846 hypothetical protein; hypothetical protein 2751317 5870245 PputGB1_2456 Pseudomonas putida GB-1 hypothetical protein YP_001668691.1 2750775 D 76869 CDS YP_001668692.1 167033461 5870246 2751304..2751867 1 NC_010322.1 KEGG: pen:PSEEN2845 hypothetical protein; hypothetical protein 2751867 5870246 PputGB1_2457 Pseudomonas putida GB-1 hypothetical protein YP_001668692.1 2751304 D 76869 CDS YP_001668693.1 167033462 5870247 2751867..2752376 1 NC_010322.1 KEGG: pen:PSEEN2844 hypothetical protein; hypothetical protein 2752376 5870247 PputGB1_2458 Pseudomonas putida GB-1 hypothetical protein YP_001668693.1 2751867 D 76869 CDS YP_001668694.1 167033463 5870248 2752373..2754238 1 NC_010322.1 PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN2843 secretion type II protein related to GspD (secretin) protein; type II and III secretion system protein 2754238 5870248 PputGB1_2459 Pseudomonas putida GB-1 type II and III secretion system protein YP_001668694.1 2752373 D 76869 CDS YP_001668695.1 167033464 5870249 2754235..2754714 1 NC_010322.1 related to protein G. signal peptide; KEGG: pen:PSEEN2842 secretion type II protein related to protein G. signal peptide; secretion type II protein 2754714 5870249 PputGB1_2460 Pseudomonas putida GB-1 secretion type II protein YP_001668695.1 2754235 D 76869 CDS YP_001668696.1 167033465 5870250 2754720..2755094 1 NC_010322.1 PFAM: type II secretion system protein G; KEGG: pen:PSEEN2841 secretion protein; type II secretion system protein G 2755094 5870250 PputGB1_2461 Pseudomonas putida GB-1 type II secretion system protein G YP_001668696.1 2754720 D 76869 CDS YP_001668697.1 167033466 5870251 2755069..2755596 1 NC_010322.1 KEGG: pen:PSEEN2840 hypothetical protein; hypothetical protein 2755596 5870251 PputGB1_2462 Pseudomonas putida GB-1 hypothetical protein YP_001668697.1 2755069 D 76869 CDS YP_001668698.1 167033467 5870252 2755593..2755985 1 NC_010322.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2755985 5870252 PputGB1_2463 Pseudomonas putida GB-1 curli assembly protein CsgE YP_001668698.1 2755593 D 76869 CDS YP_001668699.1 167033468 5870253 2755982..2756395 1 NC_010322.1 KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; curli production assembly/transport protein CsgF 2756395 5870253 PputGB1_2464 Pseudomonas putida GB-1 curli production assembly/transport protein CsgF YP_001668699.1 2755982 D 76869 CDS YP_001668700.1 167033469 5870254 2756430..2757281 1 NC_010322.1 PFAM: Curli production assembly/transport component CsgG; KEGG: pen:PSEEN2837 curli production assembly/transport component CsgG precursor; curli production assembly/transport protein CsgG 2757281 5870254 PputGB1_2465 Pseudomonas putida GB-1 curli production assembly/transport protein CsgG YP_001668700.1 2756430 D 76869 CDS YP_001668701.1 167033470 5870255 2757426..2758313 1 NC_010322.1 KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 2758313 5870255 PputGB1_2466 Pseudomonas putida GB-1 hypothetical protein YP_001668701.1 2757426 D 76869 CDS YP_001668702.1 167033471 5870256 2758404..2758586 1 NC_010322.1 hypothetical protein 2758586 5870256 PputGB1_2467 Pseudomonas putida GB-1 hypothetical protein YP_001668702.1 2758404 D 76869 CDS YP_001668703.1 167033472 5870257 2758859..2759188 1 NC_010322.1 KEGG: pen:PSEEN1832 hypothetical protein; hypothetical protein 2759188 5870257 PputGB1_2468 Pseudomonas putida GB-1 hypothetical protein YP_001668703.1 2758859 D 76869 CDS YP_001668704.1 167033473 5870258 2759622..2761532 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN2820 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 2761532 5870258 PputGB1_2469 Pseudomonas putida GB-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001668704.1 2759622 D 76869 CDS YP_001668705.1 167033474 5870259 2761536..2763269 1 NC_010322.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2819 ABC efflux transporter, permease/ATP-binding protein; ABC transporter-like protein 2763269 5870259 PputGB1_2470 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668705.1 2761536 D 76869 CDS YP_001668706.1 167033475 5870260 2763259..2763936 1 NC_010322.1 KEGG: pen:PSEEN2818 hypothetical protein; hypothetical protein 2763936 5870260 PputGB1_2471 Pseudomonas putida GB-1 hypothetical protein YP_001668706.1 2763259 D 76869 CDS YP_001668707.1 167033476 5870261 2763929..2765221 1 NC_010322.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pen:PSEEN2817 hypothetical protein; monooxygenase FAD-binding 2765221 5870261 PputGB1_2472 Pseudomonas putida GB-1 monooxygenase FAD-binding YP_001668707.1 2763929 D 76869 CDS YP_001668708.1 167033477 5870262 complement(2765365..2766678) 1 NC_010322.1 KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 2766678 5870262 PputGB1_2473 Pseudomonas putida GB-1 hypothetical protein YP_001668708.1 2765365 R 76869 CDS YP_001668709.1 167033478 5870263 complement(2766784..2768277) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2978 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 2768277 5870263 PputGB1_2474 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668709.1 2766784 R 76869 CDS YP_001668710.1 167033479 5870264 2768597..2770255 1 NC_010322.1 PFAM: Quinohemoprotein amine dehydrogenase A alpha subunit haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; KEGG: pen:PSEEN2977 quinohemoprotein amine dehydrogenase 60 kDa subunit; hypothetical protein 2770255 5870264 PputGB1_2475 Pseudomonas putida GB-1 hypothetical protein YP_001668710.1 2768597 D 76869 CDS YP_001668711.1 167033480 5870265 2770304..2771734 1 NC_010322.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2976 hypothetical protein; radical SAM domain-containing protein 2771734 5870265 PputGB1_2476 Pseudomonas putida GB-1 radical SAM domain-containing protein YP_001668711.1 2770304 D 76869 CDS YP_001668712.1 167033481 5870266 2771736..2772059 1 NC_010322.1 PFAM: Quinohemoprotein amine dehydrogenase gamma subunit; KEGG: pen:PSEEN2975 quinohemoprotein amine dehydrogenase gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma 2772059 5870266 PputGB1_2477 Pseudomonas putida GB-1 quinohemoprotein amine dehydrogenase subunit gamma YP_001668712.1 2771736 D 76869 CDS YP_001668713.1 167033482 5870267 2772091..2773212 1 NC_010322.1 KEGG: pen:PSEEN2974 quinohemoprotein amine dehydrogenase 40 kDa subunit; hypothetical protein 2773212 5870267 PputGB1_2478 Pseudomonas putida GB-1 hypothetical protein YP_001668713.1 2772091 D 76869 CDS YP_001668714.1 167033483 5870268 2773289..2774962 1 NC_010322.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2774962 5870268 PputGB1_2479 Pseudomonas putida GB-1 acyl-CoA synthetase YP_001668714.1 2773289 D 76869 CDS YP_001668715.1 167033484 5870269 complement(2774993..2775568) 1 NC_010322.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 2775568 mobA 5870269 mobA Pseudomonas putida GB-1 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001668715.1 2774993 R 76869 CDS YP_001668716.1 167033485 5870270 complement(2775630..2778758) 1 NC_010322.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2971 multidrug/solvent RND transporter, AcrB-like; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2778758 5870270 PputGB1_2481 Pseudomonas putida GB-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001668716.1 2775630 R 76869 CDS YP_001668717.1 167033486 5870271 complement(2778770..2779945) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2970 multidrug efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 2779945 5870271 PputGB1_2482 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001668717.1 2778770 R 76869 CDS YP_001668718.1 167033487 5870272 2780137..2780838 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2969 response regulator; two component transcriptional regulator 2780838 5870272 PputGB1_2483 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668718.1 2780137 D 76869 CDS YP_001668719.1 167033488 5870273 2780845..2782143 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2968 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2782143 5870273 PputGB1_2484 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668719.1 2780845 D 76869 CDS YP_001668720.1 167033489 5870274 complement(2782118..2783209) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN2967 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2783209 5870274 PputGB1_2485 Pseudomonas putida GB-1 diguanylate cyclase YP_001668720.1 2782118 R 76869 CDS YP_001668721.1 167033490 5870275 complement(2783251..2784090) 1 NC_010322.1 KEGG: pen:PSEEN2966 hypothetical protein; hypothetical protein 2784090 5870275 PputGB1_2486 Pseudomonas putida GB-1 hypothetical protein YP_001668721.1 2783251 R 76869 CDS YP_001668722.1 167033491 5870276 complement(2784090..2787095) 1 NC_010322.1 KEGG: pen:PSEEN2965 hypothetical protein; bacteriophage N4 receptor, outer membrane subunit 2787095 5870276 PputGB1_2487 Pseudomonas putida GB-1 bacteriophage N4 receptor, outer membrane subunit YP_001668722.1 2784090 R 76869 CDS YP_001668723.1 167033492 5870277 complement(2787092..2789266) 1 NC_010322.1 PFAM: General secretory system II protein E domain protein; KEGG: pen:PSEEN2964 bacteriophage receptor protein NfrB; bacteriophage N4 adsorption protein B 2789266 nfrB 5870277 nfrB Pseudomonas putida GB-1 bacteriophage N4 adsorption protein B YP_001668723.1 2787092 R 76869 CDS YP_001668724.1 167033493 5870278 2789460..2789891 1 NC_010322.1 PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN2961 hypothetical protein; transmembrane pair domain-containing protein 2789891 5870278 PputGB1_2489 Pseudomonas putida GB-1 transmembrane pair domain-containing protein YP_001668724.1 2789460 D 76869 CDS YP_001668725.1 167033494 5870279 2790073..2791632 1 NC_010322.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 2791632 5870279 PputGB1_2490 Pseudomonas putida GB-1 threonine dehydratase YP_001668725.1 2790073 D 76869 CDS YP_001668726.1 167033495 5870280 complement(2791798..2792979) 1 NC_010322.1 KEGG: pen:PSEEN2958 hypothetical protein; hypothetical protein 2792979 5870280 PputGB1_2491 Pseudomonas putida GB-1 hypothetical protein YP_001668726.1 2791798 R 76869 CDS YP_001668727.1 167033496 5870281 complement(2793043..2793510) 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2957 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2793510 5870281 PputGB1_2492 Pseudomonas putida GB-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001668727.1 2793043 R 76869 CDS YP_001668728.1 167033497 5870282 complement(2793621..2795240) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2956 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 2795240 5870282 PputGB1_2493 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668728.1 2793621 R 76869 CDS YP_001668729.1 167033498 5870283 complement(2795388..2799215) 1 NC_010322.1 KEGG: pen:PSEEN2953 hypothetical protein; hypothetical protein 2799215 5870283 PputGB1_2494 Pseudomonas putida GB-1 hypothetical protein YP_001668729.1 2795388 R 76869 CDS YP_001668730.1 167033499 5870284 2799539..2800693 1 NC_010322.1 KEGG: pen:PSEEN2952 hypothetical protein; hypothetical protein 2800693 5870284 PputGB1_2495 Pseudomonas putida GB-1 hypothetical protein YP_001668730.1 2799539 D 76869 CDS YP_001668731.1 167033500 5870285 2800767..2801885 1 NC_010322.1 KEGG: pen:PSEEN2951 hypothetical protein; hypothetical protein 2801885 5870285 PputGB1_2496 Pseudomonas putida GB-1 hypothetical protein YP_001668731.1 2800767 D 76869 CDS YP_001668732.1 167033501 5870286 2801930..2802712 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pfo:Pfl_2165 transcriptional regulator, AraC family; AraC family transcriptional regulator 2802712 5870286 PputGB1_2497 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668732.1 2801930 D 76869 CDS YP_001668733.1 167033502 5870287 complement(2802691..2803290) 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_3318 efflux protein, LysE family; lysine exporter protein LysE/YggA 2803290 5870287 PputGB1_2498 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668733.1 2802691 R 76869 CDS YP_001668734.1 167033503 5870288 2803573..2805144 1 NC_010322.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: pen:PSEEN3059 hypothetical protein; integral membrane protein TerC 2805144 5870288 PputGB1_2499 Pseudomonas putida GB-1 integral membrane protein TerC YP_001668734.1 2803573 D 76869 CDS YP_001668735.1 167033504 5870289 complement(2805107..2805967) 1 NC_010322.1 TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein 2805967 5870289 PputGB1_2500 Pseudomonas putida GB-1 transporter DMT superfamily protein YP_001668735.1 2805107 R 76869 CDS YP_001668736.1 167033505 5870290 complement(2806028..2807614) 1 NC_010322.1 PFAM: EAL domain protein; KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); diguanylate phosphodiesterase 2807614 5870290 PputGB1_2501 Pseudomonas putida GB-1 diguanylate phosphodiesterase YP_001668736.1 2806028 R 76869 CDS YP_001668737.1 167033506 5870291 2807915..2808991 1 NC_010322.1 KEGG: pen:PSEEN3054 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2808991 5870291 PputGB1_2502 Pseudomonas putida GB-1 4-hydroxyphenylpyruvate dioxygenase YP_001668737.1 2807915 D 76869 CDS YP_001668738.1 167033507 5870292 complement(2809016..2809822) 1 NC_010322.1 KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); hypothetical protein 2809822 5870292 PputGB1_2503 Pseudomonas putida GB-1 hypothetical protein YP_001668738.1 2809016 R 76869 CDS YP_001668739.1 167033508 5870293 complement(2809956..2810642) 1 NC_010322.1 PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN3053 hypothetical protein; ThiJ/PfpI domain-containing protein 2810642 5870293 PputGB1_2504 Pseudomonas putida GB-1 ThiJ/PfpI domain-containing protein YP_001668739.1 2809956 R 76869 CDS YP_001668740.1 167033509 5870294 2810733..2812856 1 NC_010322.1 KEGG: pen:PSEEN3051 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2812856 5870294 PputGB1_2505 Pseudomonas putida GB-1 PAS/PAC sensor hybrid histidine kinase YP_001668740.1 2810733 D 76869 CDS YP_001668741.1 167033510 5870295 complement(2812863..2814479) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3246 sensor histidine kinase/response regulator; histidine kinase 2814479 5870295 PputGB1_2506 Pseudomonas putida GB-1 histidine kinase YP_001668741.1 2812863 R 76869 CDS YP_001668742.1 167033511 5870296 complement(2814560..2815615) 1 NC_010322.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN3050 hypothetical protein; hypothetical protein 2815615 5870296 PputGB1_2507 Pseudomonas putida GB-1 hypothetical protein YP_001668742.1 2814560 R 76869 CDS YP_001668743.1 167033512 5870297 2815752..2816339 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: eca:ECA1819 TetR-family transcriptional regulator; TetR family transcriptional regulator 2816339 5870297 PputGB1_2508 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001668743.1 2815752 D 76869 CDS YP_001668744.1 167033513 5870298 complement(2816459..2817874) 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2311 multidrug efflux RND outer membrane protein OprN; RND efflux system outer membrane lipoprotein 2817874 5870298 PputGB1_2509 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001668744.1 2816459 R 76869 CDS YP_001668745.1 167033514 5870299 complement(2817871..2821050) 1 NC_010322.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2312 acridine efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein 2821050 5870299 PputGB1_2510 Pseudomonas putida GB-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001668745.1 2817871 R 76869 CDS YP_001668746.1 167033515 5870300 complement(2821063..2822304) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2313 multidrug efflux RND membrane fusion protein MexE; RND family efflux transporter MFP subunit 2822304 5870300 PputGB1_2511 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001668746.1 2821063 R 76869 CDS YP_001668747.1 167033516 5870301 complement(2822462..2824048) 1 NC_010322.1 PFAM: Rhodanese domain protein; KEGG: pae:PA2603 probable thiosulfate sulfurtransferase; rhodanese domain-containing protein 2824048 5870301 PputGB1_2512 Pseudomonas putida GB-1 rhodanese domain-containing protein YP_001668747.1 2822462 R 76869 CDS YP_001668748.1 167033517 5870302 complement(2824045..2824653) 1 NC_010322.1 PFAM: cysteine dioxygenase type I; KEGG: pfl:PFL_1375 hypothetical protein; cysteine dioxygenase type I 2824653 5870302 PputGB1_2513 Pseudomonas putida GB-1 cysteine dioxygenase type I YP_001668748.1 2824045 R 76869 CDS YP_001668749.1 167033518 5870303 2824848..2825783 1 NC_010322.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: psb:Psyr_3606 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein 2825783 5870303 PputGB1_2514 Pseudomonas putida GB-1 aliphatic sulfonates ABC transporter substrate-binding protein YP_001668749.1 2824848 D 76869 CDS YP_001668750.1 167033519 5870304 2825811..2827118 1 NC_010322.1 KEGG: rha:RHA1_ro01764 probable nitrilotriacetate monooxygenase, component A; putative nitrilotriacetate monooxygenase, component A 2827118 5870304 PputGB1_2515 Pseudomonas putida GB-1 putative nitrilotriacetate monooxygenase, component A YP_001668750.1 2825811 D 76869 CDS YP_001668751.1 167033520 5870305 complement(2827112..2828302) 1 NC_010322.1 PFAM: type II secretion system protein; KEGG: pen:PSEEN2459 type II secretion pathway protein F; type II secretion system protein 2828302 5870305 PputGB1_2516 Pseudomonas putida GB-1 type II secretion system protein YP_001668751.1 2827112 R 76869 CDS YP_001668752.1 167033521 5870306 complement(2828314..2828739) 1 NC_010322.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN2460 probable type II secretion system protein G; general secretion pathway protein G 2828739 5870306 PputGB1_2517 Pseudomonas putida GB-1 general secretion pathway protein G YP_001668752.1 2828314 R 76869 CDS YP_001668753.1 167033522 5870307 2828844..2829518 1 NC_010322.1 PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN2461 lytic transglycosylase; lytic transglycosylase 2829518 5870307 PputGB1_2518 Pseudomonas putida GB-1 lytic transglycosylase YP_001668753.1 2828844 D 76869 CDS YP_001668754.1 167033523 5870308 2829637..2831097 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2416 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2831097 5870308 PputGB1_2519 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668754.1 2829637 D 76869 CDS YP_001668755.1 167033524 5870309 2831395..2832888 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2417 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2832888 5870309 PputGB1_2520 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668755.1 2831395 D 76869 CDS YP_001668756.1 167033525 5870310 2832857..2834284 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2418 sigma-54 dependent transcriptional regulator, fis family/response regulator; Fis family two component sigma-54 specific transcriptional regulator 2834284 5870310 PputGB1_2521 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001668756.1 2832857 D 76869 CDS YP_001668757.1 167033526 5870311 complement(2834369..2834671) 1 NC_010322.1 KEGG: pen:PSEEN2419 hypothetical protein; hypothetical protein 2834671 5870311 PputGB1_2522 Pseudomonas putida GB-1 hypothetical protein YP_001668757.1 2834369 R 76869 CDS YP_001668758.1 167033527 5870312 complement(2834756..2836108) 1 NC_010322.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pen:PSEEN2420 gluconate permease (GntP family); gluconate transporter 2836108 5870312 PputGB1_2523 Pseudomonas putida GB-1 gluconate transporter YP_001668758.1 2834756 R 76869 CDS YP_001668759.1 167033528 5870313 complement(2836220..2836759) 1 NC_010322.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase 2836759 5870313 PputGB1_2524 Pseudomonas putida GB-1 carbohydrate kinase YP_001668759.1 2836220 R 76869 CDS YP_001668760.1 167033529 5870314 2836967..2837986 1 NC_010322.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN2422 transcriptional regulator, LacI family; LacI family transcriptional regulator 2837986 5870314 PputGB1_2525 Pseudomonas putida GB-1 LacI family transcriptional regulator YP_001668760.1 2836967 D 76869 CDS YP_001668761.1 167033530 5870315 2838145..2839464 1 NC_010322.1 KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 2839464 5870315 PputGB1_2526 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001668761.1 2838145 D 76869 CDS YP_001668762.1 167033531 5870316 complement(2839439..2842711) 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2424 sensor histidine kinase/response regulator; Hpt sensor hybrid histidine kinase 2842711 5870316 PputGB1_2527 Pseudomonas putida GB-1 Hpt sensor hybrid histidine kinase YP_001668762.1 2839439 R 76869 CDS YP_001668763.1 167033532 5870317 complement(2842725..2843339) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN2425 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 2843339 5870317 PputGB1_2528 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001668763.1 2842725 R 76869 CDS YP_001668764.1 167033533 5870318 complement(2843562..2843804) 1 NC_010322.1 PFAM: protein of unknown function DUF1272; KEGG: pen:PSEEN2426 hypothetical protein; hypothetical protein 2843804 5870318 PputGB1_2529 Pseudomonas putida GB-1 hypothetical protein YP_001668764.1 2843562 R 76869 CDS YP_001668765.1 167033534 5870319 complement(2843871..2844623) 1 NC_010322.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2427 precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase 2844623 5870319 PputGB1_2530 Pseudomonas putida GB-1 precorrin-4 C(11)-methyltransferase YP_001668765.1 2843871 R 76869 CDS YP_001668766.1 167033535 5870320 complement(2844657..2845043) 1 NC_010322.1 KEGG: pen:PSEEN2428 cobalamin biosynthesis protein CobE; cobalamin biosynthesis protein CobE 2845043 5870320 PputGB1_2531 Pseudomonas putida GB-1 cobalamin biosynthesis protein CobE YP_001668766.1 2844657 R 76869 CDS YP_001668767.1 167033536 5870321 complement(2845043..2845729) 1 NC_010322.1 TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: pen:PSEEN2429 cobalt transporter subunit CbtA; cobalt transporter subunit CbtA 2845729 5870321 PputGB1_2532 Pseudomonas putida GB-1 cobalt transporter subunit CbtA YP_001668767.1 2845043 R 76869 CDS YP_001668768.1 167033537 5870322 complement(2845739..2845927) 1 NC_010322.1 TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: pen:PSEEN2431 hypothetical protein; cobalt transporter subunit CbtB 2845927 5870322 PputGB1_2533 Pseudomonas putida GB-1 cobalt transporter subunit CbtB YP_001668768.1 2845739 R 76869 CDS YP_001668769.1 167033538 5870323 complement(2846359..2847459) 1 NC_010322.1 PFAM: luciferase family protein; KEGG: bur:Bcep18194_B1755 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase 2847459 5870323 PputGB1_2534 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001668769.1 2846359 R 76869 CDS YP_001668770.1 167033539 5870324 complement(2847487..2848821) 1 NC_010322.1 KEGG: psb:Psyr_2211 monooxygenase, NtaA/SnaA/SoxA family; NtaA/SnaA/SoxA family monooxygenase 2848821 5870324 PputGB1_2535 Pseudomonas putida GB-1 NtaA/SnaA/SoxA family monooxygenase YP_001668770.1 2847487 R 76869 CDS YP_001668771.1 167033540 5870325 complement(2848912..2849706) 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: pst:PSPTO_2487 hypothetical protein; aldolase II superfamily protein 2849706 5870325 PputGB1_2536 Pseudomonas putida GB-1 aldolase II superfamily protein YP_001668771.1 2848912 R 76869 CDS YP_001668772.1 167033541 5870326 complement(2849731..2850675) 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pst:PSPTO_2424 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase 2850675 5870326 PputGB1_2537 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001668772.1 2849731 R 76869 CDS YP_001668773.1 167033542 5870327 complement(2850672..2851808) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pst:PSPTO_1790 acyl-CoA dehydrogenase family protein; type 2 acyl-CoA dehydrogenase 2851808 5870327 PputGB1_2538 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001668773.1 2850672 R 76869 CDS YP_001668774.1 167033543 5870328 complement(2852019..2852909) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_1376 transcriptional regulator, LysR family; LysR family transcriptional regulator 2852909 5870328 PputGB1_2539 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668774.1 2852019 R 76869 CDS YP_001668775.1 167033544 5870329 complement(2853005..2853484) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2001 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2853484 5870329 PputGB1_2540 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001668775.1 2853005 R 76869 CDS YP_001668776.1 167033545 5870330 2853609..2854238 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2002 transporter, LysE family; lysine exporter protein LysE/YggA 2854238 5870330 PputGB1_2541 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001668776.1 2853609 D 76869 CDS YP_001668777.1 167033546 5870331 2854260..2855144 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN2003 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2855144 5870331 PputGB1_2542 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001668777.1 2854260 D 76869 CDS YP_001668778.1 167033547 5870332 2855207..2856181 1 NC_010322.1 KEGG: scl:sce1298 hypothetical protein; hypothetical protein 2856181 5870332 PputGB1_2543 Pseudomonas putida GB-1 hypothetical protein YP_001668778.1 2855207 D 76869 CDS YP_001668779.1 167033548 5870333 2856287..2857174 1 NC_010322.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN2646 hypothetical protein; pirin domain-containing protein 2857174 5870333 PputGB1_2544 Pseudomonas putida GB-1 pirin domain-containing protein YP_001668779.1 2856287 D 76869 CDS YP_001668780.1 167033549 5870334 2857215..2858192 1 NC_010322.1 PFAM: HhH-GPD family protein; AlkA domain protein; KEGG: pfl:PFL_4632 DNA-3-methyladenine glycosylase II; alcohol dehydrogenase 2858192 5870334 PputGB1_2545 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001668780.1 2857215 D 76869 CDS YP_001668781.1 167033550 5870335 2858379..2858639 1 NC_010322.1 PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN2104 hypothetical protein; hypothetical protein 2858639 5870335 PputGB1_2546 Pseudomonas putida GB-1 hypothetical protein YP_001668781.1 2858379 D 76869 CDS YP_001668782.1 167033551 5870336 complement(2858660..2859274) 1 NC_010322.1 PFAM: protein of unknown function DUF1282; KEGG: pfo:Pfl_2694 protein of unknown function DUF1282; hypothetical protein 2859274 5870336 PputGB1_2547 Pseudomonas putida GB-1 hypothetical protein YP_001668782.1 2858660 R 76869 CDS YP_001668783.1 167033552 5870337 complement(2859361..2859648) 1 NC_010322.1 KEGG: pen:PSEEN2105 hypothetical protein; hypothetical protein 2859648 5870337 PputGB1_2548 Pseudomonas putida GB-1 hypothetical protein YP_001668783.1 2859361 R 76869 CDS YP_001668784.1 167033553 5870338 complement(2859816..2860475) 1 NC_010322.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pen:PSEEN2825 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA; 2OG-Fe(II) oxygenase 2860475 5870338 PputGB1_2549 Pseudomonas putida GB-1 2OG-Fe(II) oxygenase YP_001668784.1 2859816 R 76869 CDS YP_001668785.1 167033554 5870339 complement(2860652..2862097) 1 NC_010322.1 PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2824 curlin; signal peptide; curlin-associated protein 2862097 5870339 PputGB1_2550 Pseudomonas putida GB-1 curlin-associated protein YP_001668785.1 2860652 R 76869 CDS YP_001668786.1 167033555 5870340 complement(2862114..2862587) 1 NC_010322.1 PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2823 curli fiber surface-exposed nucleator CsgB; curlin-associated protein 2862587 5870340 PputGB1_2551 Pseudomonas putida GB-1 curlin-associated protein YP_001668786.1 2862114 R 76869 CDS YP_001668787.1 167033556 5870341 complement(2862604..2864835) 1 NC_010322.1 KEGG: pen:PSEEN2822 hypothetical protein; hypothetical protein 2864835 5870341 PputGB1_2552 Pseudomonas putida GB-1 hypothetical protein YP_001668787.1 2862604 R 76869 CDS YP_001668788.1 167033557 5870342 complement(2864868..2866196) 1 NC_010322.1 KEGG: pen:PSEEN2821 hypothetical protein; hypothetical protein 2866196 5870342 PputGB1_2553 Pseudomonas putida GB-1 hypothetical protein YP_001668788.1 2864868 R 76869 CDS YP_001668789.1 167033558 5870343 complement(2866495..2867622) 1 NC_010322.1 KEGG: csa:Csal_2244 hypothetical protein; hypothetical protein 2867622 5870343 PputGB1_2554 Pseudomonas putida GB-1 hypothetical protein YP_001668789.1 2866495 R 76869 CDS YP_001668790.1 167033559 5870344 complement(2867622..2870303) 1 NC_010322.1 KEGG: csa:Csal_0206 hypothetical protein; hypothetical protein 2870303 5870344 PputGB1_2555 Pseudomonas putida GB-1 hypothetical protein YP_001668790.1 2867622 R 76869 CDS YP_001668791.1 167033560 5870345 complement(2870315..2871193) 1 NC_010322.1 KEGG: csa:Csal_0205 hypothetical protein; hypothetical protein 2871193 5870345 PputGB1_2556 Pseudomonas putida GB-1 hypothetical protein YP_001668791.1 2870315 R 76869 CDS YP_001668792.1 167033561 5870346 complement(2871193..2873373) 1 NC_010322.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0262 hypothetical protein; ImpA family type VI secretion-associated protein 2873373 5870346 PputGB1_2557 Pseudomonas putida GB-1 ImpA family type VI secretion-associated protein YP_001668792.1 2871193 R 76869 CDS YP_001668793.1 167033562 5870347 complement(2873387..2874235) 1 NC_010322.1 KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein 2874235 5870347 PputGB1_2558 Pseudomonas putida GB-1 hypothetical protein YP_001668793.1 2873387 R 76869 CDS YP_001668794.1 167033563 5870348 complement(2874479..2875297) 1 NC_010322.1 KEGG: pen:PSEEN2686 hypothetical protein; hypothetical protein 2875297 5870348 PputGB1_2559 Pseudomonas putida GB-1 hypothetical protein YP_001668794.1 2874479 R 76869 CDS YP_001668795.1 167033564 5870349 complement(2875300..2875989) 1 NC_010322.1 PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2687 hypothetical protein; putative phosphohistidine phosphatase, SixA 2875989 5870349 PputGB1_2560 Pseudomonas putida GB-1 putative phosphohistidine phosphatase, SixA YP_001668795.1 2875300 R 76869 CDS YP_001668796.1 167033565 5870350 2876263..2877009 1 NC_010322.1 KEGG: pfl:PFL_0053 hypothetical protein; gluconate 2-dehydrogenase 2877009 5870350 PputGB1_2561 Pseudomonas putida GB-1 gluconate 2-dehydrogenase YP_001668796.1 2876263 D 76869 CDS YP_001668797.1 167033566 5870351 2877013..2878797 1 NC_010322.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: pfo:Pfl_0085 glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2878797 5870351 PputGB1_2562 Pseudomonas putida GB-1 gluconate 2-dehydrogenase YP_001668797.1 2877013 D 76869 CDS YP_001668798.1 167033567 5870352 2878810..2880057 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pfl:PFL_0055 cytochrome c family protein; gluconate 2-dehydrogenase 2880057 5870352 PputGB1_2563 Pseudomonas putida GB-1 gluconate 2-dehydrogenase YP_001668798.1 2878810 D 76869 CDS YP_001668799.1 167033568 5870353 2880278..2881297 1 NC_010322.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pau:PA14_35370 transcriptional regulator PtxS; LacI family transcriptional regulator 2881297 5870353 PputGB1_2564 Pseudomonas putida GB-1 LacI family transcriptional regulator YP_001668799.1 2880278 D 76869 CDS YP_001668800.1 167033569 5870354 2881364..2882143 1 NC_010322.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pau:PA14_35360 putative epimerase; xylose isomerase domain-containing protein 2882143 5870354 PputGB1_2565 Pseudomonas putida GB-1 xylose isomerase domain-containing protein YP_001668800.1 2881364 D 76869 CDS YP_001668801.1 167033570 5870355 2882136..2883086 1 NC_010322.1 PFAM: PfkB domain protein; KEGG: pae:PA2261 probable 2-ketogluconate kinase; ribokinase-like domain-containing protein 2883086 5870355 PputGB1_2566 Pseudomonas putida GB-1 ribokinase-like domain-containing protein YP_001668801.1 2882136 D 76869 CDS YP_001668802.1 167033571 5870356 2883146..2884438 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_35330 putative 2-ketogluconate transporter; major facilitator superfamily transporter 2884438 5870356 PputGB1_2567 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668802.1 2883146 D 76869 CDS YP_001668803.1 167033572 5870357 2884449..2885411 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pau:PA14_35320 2-ketogluconate 6-phosphate reductase; D-isomer specific 2-hydroxyacid dehydrogenase 2885411 5870357 PputGB1_2568 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001668803.1 2884449 D 76869 CDS YP_001668804.1 167033573 5870358 complement(2885470..2886435) 1 NC_010322.1 PFAM: Endonuclease I; KEGG: plu:plu2037 hypothetical protein; deoxyribonuclease I 2886435 5870358 PputGB1_2569 Pseudomonas putida GB-1 deoxyribonuclease I YP_001668804.1 2885470 R 76869 CDS YP_001668805.1 167033574 5870359 complement(2886450..2886833) 1 NC_010322.1 KEGG: psb:Psyr_3795 hypothetical protein; hypothetical protein 2886833 5870359 PputGB1_2570 Pseudomonas putida GB-1 hypothetical protein YP_001668805.1 2886450 R 76869 CDS YP_001668806.1 167033575 5870360 complement(2886981..2889380) 1 NC_010322.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: psp:PSPPH_1459 outer membrane protein, OMP85 family; outer membrane protein assembly complex, YaeT protein 2889380 5870360 PputGB1_2571 Pseudomonas putida GB-1 outer membrane protein assembly complex, YaeT protein YP_001668806.1 2886981 R 76869 CDS YP_001668807.1 167033576 5870361 2889542..2890234 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3793 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 2890234 5870361 PputGB1_2572 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668807.1 2889542 D 76869 CDS YP_001668808.1 167033577 5870362 2890231..2891496 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: psb:Psyr_3792 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 2891496 5870362 PputGB1_2573 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668808.1 2890231 D 76869 CDS YP_001668809.1 167033578 5870363 complement(2891528..2891995) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_4037 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2891995 5870363 PputGB1_2574 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668809.1 2891528 R 76869 CDS YP_001668810.1 167033579 5870364 2892159..2893409 1 NC_010322.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2893409 5870364 PputGB1_2575 Pseudomonas putida GB-1 allantoate amidohydrolase YP_001668810.1 2892159 D 76869 CDS YP_001668811.1 167033580 5870365 2893488..2894693 1 NC_010322.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 2894693 5870365 PputGB1_2576 Pseudomonas putida GB-1 diaminopropionate ammonia-lyase YP_001668811.1 2893488 D 76869 CDS YP_001668812.1 167033581 5870366 complement(2894706..2895890) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_2918 major facilitator family transporter; major facilitator superfamily transporter 2895890 5870366 PputGB1_2577 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668812.1 2894706 R 76869 CDS YP_001668813.1 167033582 5870367 complement(2895997..2896467) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: hch:HCH_01492 transcriptional regulator; AsnC family transcriptional regulator 2896467 5870367 PputGB1_2578 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668813.1 2895997 R 76869 CDS YP_001668814.1 167033583 5870368 complement(2896489..2897784) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: bpt:Bpet3491 putative oxidoreductase; FAD dependent oxidoreductase 2897784 5870368 PputGB1_2579 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668814.1 2896489 R 76869 CDS YP_001668815.1 167033584 5870369 complement(2897882..2898721) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PF00192 probable amino acid ABC transporter, substrate-binding protein; extracellular solute-binding protein 2898721 5870369 PputGB1_2580 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668815.1 2897882 R 76869 CDS YP_001668816.1 167033585 5870370 complement(2898783..2899550) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vco:VC0395_A0972 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2899550 5870370 PputGB1_2581 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668816.1 2898783 R 76869 CDS YP_001668817.1 167033586 5870371 complement(2899563..2900528) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00191 probable amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 2900528 5870371 PputGB1_2582 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001668817.1 2899563 R 76869 CDS YP_001668818.1 167033587 5870372 2900778..2901437 1 NC_010322.1 KEGG: reh:H16_B1854 putative hydrolase alpha/beta fold; putative hydrolase alpha/beta fold 2901437 5870372 PputGB1_2583 Pseudomonas putida GB-1 putative hydrolase alpha/beta fold YP_001668818.1 2900778 D 76869 CDS YP_001668819.1 167033588 5870373 complement(2901422..2902303) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vvu:VV1_2777 transcriptional regulator; LysR family transcriptional regulator 2902303 5870373 PputGB1_2584 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668819.1 2901422 R 76869 CDS YP_001668820.1 167033589 5870374 2902489..2904132 1 NC_010322.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2904132 5870374 PputGB1_2585 Pseudomonas putida GB-1 acetolactate synthase YP_001668820.1 2902489 D 76869 CDS YP_001668821.1 167033590 5870375 complement(2904273..2906816) 1 NC_010322.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein 2906816 5870375 PputGB1_2586 Pseudomonas putida GB-1 response regulator receiver modulated GAF sensor protein YP_001668821.1 2904273 R 76869 CDS YP_001668822.1 167033591 5870376 complement(2906976..2908298) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pap:PSPA7_1544 probable amino acid permease; amino acid permease-associated protein 2908298 5870376 PputGB1_2587 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668822.1 2906976 R 76869 CDS YP_001668823.1 167033592 5870377 complement(2908396..2909217) 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pap:PSPA7_1543 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2909217 5870377 PputGB1_2588 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001668823.1 2908396 R 76869 CDS YP_001668824.1 167033593 5870378 2909379..2910167 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pau:PA14_17720 putative transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2910167 5870378 PputGB1_2589 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001668824.1 2909379 D 76869 CDS YP_001668825.1 167033594 5870379 complement(2910170..2910961) 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pau:PA14_45250 putative transcriptional regulator; LuxR family transcriptional regulator 2910961 5870379 PputGB1_2590 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001668825.1 2910170 R 76869 CDS YP_001668826.1 167033595 5870380 2911157..2912521 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pau:PA14_45240 putative amino acid permease; amino acid permease-associated protein 2912521 5870380 PputGB1_2591 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001668826.1 2911157 D 76869 CDS YP_001668827.1 167033596 5870381 2912531..2913637 1 NC_010322.1 PFAM: peptidase S58 DmpA; KEGG: pae:PA1486 hypothetical protein; peptidase S58 DmpA 2913637 5870381 PputGB1_2592 Pseudomonas putida GB-1 peptidase S58 DmpA YP_001668827.1 2912531 D 76869 CDS YP_001668828.1 167033597 5870382 2913753..2914394 1 NC_010322.1 KEGG: eca:ECA1481 hypothetical protein; hypothetical protein 2914394 5870382 PputGB1_2593 Pseudomonas putida GB-1 hypothetical protein YP_001668828.1 2913753 D 76869 CDS YP_001668829.1 167033598 5870383 complement(2914373..2914810) 1 NC_010322.1 PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: pde:Pden_1337 hypothetical protein; calcium/calmodulin dependent protein kinase II association-domain-containing protein 2914810 5870383 PputGB1_2594 Pseudomonas putida GB-1 calcium/calmodulin dependent protein kinase II association-domain-containing protein YP_001668829.1 2914373 R 76869 CDS YP_001668830.1 167033599 5870384 2915201..2915605 1 NC_010322.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: pfl:PFL_6174 RNA polymerase-binding protein DksA, putative; TraR/DksA family transcriptional regulator 2915605 5870384 PputGB1_2595 Pseudomonas putida GB-1 TraR/DksA family transcriptional regulator YP_001668830.1 2915201 D 76869 CDS YP_001668831.1 167033600 5870385 2915682..2916446 1 NC_010322.1 PFAM: protein of unknown function DUF347; KEGG: pfl:PFL_4648 hypothetical protein; hypothetical protein 2916446 5870385 PputGB1_2596 Pseudomonas putida GB-1 hypothetical protein YP_001668831.1 2915682 D 76869 CDS YP_001668832.1 167033601 5870386 2916465..2916890 1 NC_010322.1 KEGG: bvi:Bcep1808_7222 conserved hypothetical signal peptide protein; putative signal peptide protein 2916890 5870386 PputGB1_2597 Pseudomonas putida GB-1 putative signal peptide protein YP_001668832.1 2916465 D 76869 CDS YP_001668833.1 167033602 5870387 2916958..2917623 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rme:Rmet_4978 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2917623 5870387 PputGB1_2598 Pseudomonas putida GB-1 two component transcriptional regulator YP_001668833.1 2916958 D 76869 CDS YP_001668834.1 167033603 5870388 2917599..2918951 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2297 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 2918951 5870388 PputGB1_2599 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001668834.1 2917599 D 76869 CDS YP_001668835.1 167033604 5870389 complement(2918967..2919455) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_2362 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2919455 5870389 PputGB1_2600 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668835.1 2918967 R 76869 CDS YP_001668836.1 167033605 5870390 2919551..2922598 1 NC_010322.1 PFAM: aminoglycoside phosphotransferase; peptidase M23B; aminotransferase class-III; KEGG: pfl:PFL_2361 hypothetical protein; hypothetical protein 2922598 5870390 PputGB1_2601 Pseudomonas putida GB-1 hypothetical protein YP_001668836.1 2919551 D 76869 CDS YP_001668837.1 167033606 5870391 complement(2922651..2923091) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_2362 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2923091 5870391 PputGB1_2602 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001668837.1 2922651 R 76869 CDS YP_001668838.1 167033607 5870392 2923380..2924168 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pfl:PFL_2360 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 2924168 5870392 PputGB1_2603 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668838.1 2923380 D 76869 CDS YP_001668839.1 167033608 5870393 2924234..2924881 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2359 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 2924881 5870393 PputGB1_2604 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001668839.1 2924234 D 76869 CDS YP_001668840.1 167033609 5870394 2924891..2925550 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter; polar amino acid ABC transporter inner membrane subunit 2925550 5870394 PputGB1_2605 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001668840.1 2924891 D 76869 CDS YP_001668841.1 167033610 5870395 2925547..2926311 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2357 glutamine ABC transporter, ATP-binding protein; ABC transporter-like protein 2926311 5870395 PputGB1_2606 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668841.1 2925547 D 76869 CDS YP_001668842.1 167033611 5870396 2926435..2926794 1 NC_010322.1 KEGG: ctc:CTC02318 histidine ammonia-lyase; histidine ammonia-lyase 2926794 5870396 PputGB1_2607 Pseudomonas putida GB-1 histidine ammonia-lyase YP_001668842.1 2926435 D 76869 CDS YP_001668843.1 167033612 5870397 2926791..2927069 1 NC_010322.1 KEGG: mxa:MXAN_3465 histidine ammonia-lyase; histidine ammonia-lyase 2927069 5870397 PputGB1_2608 Pseudomonas putida GB-1 histidine ammonia-lyase YP_001668843.1 2926791 D 76869 CDS YP_001668844.1 167033613 5870398 2927337..2928368 1 NC_010322.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pau:PA14_20890 ADP-L-glycero-D-mannoheptose 6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 2928368 5870398 PputGB1_2609 Pseudomonas putida GB-1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001668844.1 2927337 D 76869 CDS YP_001668845.1 167033614 5870399 complement(2928506..2929510) 1 NC_010322.1 TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator 2929510 5870399 PputGB1_2610 Pseudomonas putida GB-1 PaaX family transcriptional regulator YP_001668845.1 2928506 R 76869 CDS YP_001668846.1 167033615 5870400 complement(2929507..2930106) 1 NC_010322.1 TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2790 regulatory PhaM protein; phenylacetic acid degradation protein PaaY 2930106 5870400 PputGB1_2611 Pseudomonas putida GB-1 phenylacetic acid degradation protein PaaY YP_001668846.1 2929507 R 76869 CDS YP_001668847.1 167033616 5870401 2930461..2931234 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2791 enoyl-CoA hydratase/isomerase PhaA; enoyl-CoA hydratase-isomerase 2931234 5870401 PputGB1_2612 Pseudomonas putida GB-1 enoyl-CoA hydratase-isomerase YP_001668847.1 2930461 D 76869 CDS YP_001668848.1 167033617 5870402 2931269..2932060 1 NC_010322.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2932060 5870402 PputGB1_2613 Pseudomonas putida GB-1 enoyl-CoA hydratase YP_001668848.1 2931269 D 76869 CDS YP_001668849.1 167033618 5870403 2932063..2933580 1 NC_010322.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2933580 5870403 PputGB1_2614 Pseudomonas putida GB-1 3-hydroxyacyl-CoA dehydrogenase YP_001668849.1 2932063 D 76869 CDS YP_001668850.1 167033619 5870404 2933573..2934013 1 NC_010322.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein; phenylacetic acid degradation protein PaaD 2934013 5870404 PputGB1_2615 Pseudomonas putida GB-1 phenylacetic acid degradation protein PaaD YP_001668850.1 2933573 D 76869 CDS YP_001668851.1 167033620 5870405 2934006..2935226 1 NC_010322.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2935226 5870405 PputGB1_2616 Pseudomonas putida GB-1 beta-ketoadipyl CoA thiolase YP_001668851.1 2934006 D 76869 CDS YP_001668852.1 167033621 5870406 2935348..2936667 1 NC_010322.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: pen:PSEEN2796 phenylacetyl-CoA ligase; phenylacetate-CoA ligase 2936667 5870406 PputGB1_2617 Pseudomonas putida GB-1 phenylacetate-CoA ligase YP_001668852.1 2935348 D 76869 CDS YP_001668853.1 167033622 5870407 2936873..2937862 1 NC_010322.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2937862 paaA 5870407 paaA Pseudomonas putida GB-1 phenylacetate-CoA oxygenase subunit PaaA YP_001668853.1 2936873 D 76869 CDS YP_001668854.1 167033623 5870408 2937888..2938169 1 NC_010322.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2938169 paaB 5870408 paaB Pseudomonas putida GB-1 phenylacetate-CoA oxygenase subunit PaaB YP_001668854.1 2937888 D 76869 CDS YP_001668855.1 167033624 5870409 2938178..2938936 1 NC_010322.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pen:PSEEN2800 phenylacetic acid degradation, subunit of multicomponent oxygenase; phenylacetate-CoA oxygenase subunit PaaI 2938936 5870409 PputGB1_2620 Pseudomonas putida GB-1 phenylacetate-CoA oxygenase subunit PaaI YP_001668855.1 2938178 D 76869 CDS YP_001668856.1 167033625 5870410 2938923..2939456 1 NC_010322.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN2801 ring-hydroxylation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ 2939456 5870410 PputGB1_2621 Pseudomonas putida GB-1 phenylacetate-CoA oxygenase subunit PaaJ YP_001668856.1 2938923 D 76869 CDS YP_001668857.1 167033626 5870411 2939472..2940548 1 NC_010322.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2802 ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK 2940548 5870411 PputGB1_2622 Pseudomonas putida GB-1 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_001668857.1 2939472 D 76869 CDS YP_001668858.1 167033627 5870412 2940718..2941026 1 NC_010322.1 PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN2803 hypothetical protein; hypothetical protein 2941026 5870412 PputGB1_2623 Pseudomonas putida GB-1 hypothetical protein YP_001668858.1 2940718 D 76869 CDS YP_001668859.1 167033628 5870413 2941023..2942585 1 NC_010322.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2942585 5870413 PputGB1_2624 Pseudomonas putida GB-1 acetate permease YP_001668859.1 2941023 D 76869 CDS YP_001668860.1 167033629 5870414 2942625..2943857 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2805 phenylacetic acid-specific porin; outer membrane porin 2943857 5870414 PputGB1_2625 Pseudomonas putida GB-1 outer membrane porin YP_001668860.1 2942625 D 76869 CDS YP_001668861.1 167033630 5870415 2943896..2945950 1 NC_010322.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2945950 5870415 PputGB1_2626 Pseudomonas putida GB-1 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_001668861.1 2943896 D 76869 CDS YP_001668862.1 167033631 5870416 complement(2945999..2946268) 1 NC_010322.1 KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein 2946268 5870416 PputGB1_2627 Pseudomonas putida GB-1 hypothetical protein YP_001668862.1 2945999 R 76869 CDS YP_001668863.1 167033632 5870417 complement(2946375..2946584) 1 NC_010322.1 KEGG: pmy:Pmen_2359 hypothetical protein; hypothetical protein 2946584 5870417 PputGB1_2628 Pseudomonas putida GB-1 hypothetical protein YP_001668863.1 2946375 R 76869 CDS YP_001668864.1 167033633 5870418 complement(2946705..2947256) 1 NC_010322.1 PFAM: peptidase S14 ClpP; KEGG: pen:PSEEN3077 clp protease (protease subunit); peptidase S14 ClpP 2947256 5870418 PputGB1_2629 Pseudomonas putida GB-1 peptidase S14 ClpP YP_001668864.1 2946705 R 76869 CDS YP_001668865.1 167033634 5870419 complement(2947279..2947653) 1 NC_010322.1 PFAM: protein of unknown function DUF1452; KEGG: pen:PSEEN3078 hypothetical protein; hypothetical protein 2947653 5870419 PputGB1_2630 Pseudomonas putida GB-1 hypothetical protein YP_001668865.1 2947279 R 76869 CDS YP_001668866.1 167033635 5870420 2947806..2948579 1 NC_010322.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN3079 DNase with DNase I-like domain; endonuclease/exonuclease/phosphatase 2948579 5870420 PputGB1_2631 Pseudomonas putida GB-1 endonuclease/exonuclease/phosphatase YP_001668866.1 2947806 D 76869 CDS YP_001668867.1 167033636 5870421 2948576..2949778 1 NC_010322.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN3080 phospholipase (biosynthetic); cardiolipin synthase 2 2949778 5870421 PputGB1_2632 Pseudomonas putida GB-1 cardiolipin synthase 2 YP_001668867.1 2948576 D 76869 CDS YP_001668868.1 167033637 5870422 2949778..2950731 1 NC_010322.1 KEGG: pen:PSEEN3081 hypothetical protein; hypothetical protein 2950731 5870422 PputGB1_2633 Pseudomonas putida GB-1 hypothetical protein YP_001668868.1 2949778 D 76869 CDS YP_001668869.1 167033638 5870423 complement(2950777..2951241) 1 NC_010322.1 KEGG: pen:PSEEN2768 hypothetical protein; hypothetical protein 2951241 5870423 PputGB1_2634 Pseudomonas putida GB-1 hypothetical protein YP_001668869.1 2950777 R 76869 CDS YP_001668870.1 167033639 5870424 2951369..2953870 1 NC_010322.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2953870 ligD 5870424 ligD Pseudomonas putida GB-1 ATP-dependent DNA ligase YP_001668870.1 2951369 D 76869 CDS YP_001668871.1 167033640 5870425 2953911..2954954 1 NC_010322.1 KEGG: pen:PSEEN2765 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2954954 5870425 PputGB1_2636 Pseudomonas putida GB-1 acyl-CoA dehydrogenase YP_001668871.1 2953911 D 76869 CDS YP_001668872.1 167033641 5870426 2954951..2955703 1 NC_010322.1 PFAM: LmbE family protein; KEGG: pen:PSEEN2764 hypothetical protein; LmbE family protein 2955703 5870426 PputGB1_2637 Pseudomonas putida GB-1 LmbE family protein YP_001668872.1 2954951 D 76869 CDS YP_001668873.1 167033642 5870427 2955714..2956313 1 NC_010322.1 PFAM: NodS family protein; Methyltransferase type 12; KEGG: pen:PSEEN2763 methyltransferase; NodS family protein 2956313 5870427 PputGB1_2638 Pseudomonas putida GB-1 NodS family protein YP_001668873.1 2955714 D 76869 CDS YP_001668874.1 167033643 5870428 2956310..2957008 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2762 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 2957008 5870428 PputGB1_2639 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001668874.1 2956310 D 76869 CDS YP_001668875.1 167033644 5870429 complement(2957003..2957824) 1 NC_010322.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: pen:PSEEN2761 Ku protein; Ku protein 2957824 5870429 PputGB1_2640 Pseudomonas putida GB-1 Ku protein YP_001668875.1 2957003 R 76869 CDS YP_001668876.1 167033645 5870430 complement(2957913..2958500) 1 NC_010322.1 KEGG: fjo:Fjoh_3241 nucleoside phosphorylase-like protein; nucleoside phosphorylase-like protein 2958500 5870430 PputGB1_2641 Pseudomonas putida GB-1 nucleoside phosphorylase-like protein YP_001668876.1 2957913 R 76869 CDS YP_001668877.1 167033646 5870431 complement(2958638..2958820) 1 NC_010322.1 KEGG: pen:PSEEN3087 hypothetical protein; hypothetical protein 2958820 5870431 PputGB1_2642 Pseudomonas putida GB-1 hypothetical protein YP_001668877.1 2958638 R 76869 CDS YP_001668878.1 167033647 5870432 complement(2958968..2960251) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: mfa:Mfla_1799 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2960251 5870432 PputGB1_2643 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668878.1 2958968 R 76869 CDS YP_001668879.1 167033648 5870433 complement(2960256..2961167) 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: mfa:Mfla_1798 twin-arginine translocation pathway signal; aldo/keto reductase 2961167 5870433 PputGB1_2644 Pseudomonas putida GB-1 aldo/keto reductase YP_001668879.1 2960256 R 76869 CDS YP_001668880.1 167033649 5870434 complement(2961257..2962120) 1 NC_010322.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pen:PSEEN3113 Dyp-type peroxidase; Dyp-type peroxidase family protein 2962120 5870434 PputGB1_2645 Pseudomonas putida GB-1 Dyp-type peroxidase family protein YP_001668880.1 2961257 R 76869 CDS YP_001668881.1 167033650 5870435 2962305..2963198 1 NC_010322.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3114 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 2963198 5870435 PputGB1_2646 Pseudomonas putida GB-1 bile acid:sodium symporter YP_001668881.1 2962305 D 76869 CDS YP_001668882.1 167033651 5870436 complement(2963214..2963744) 1 NC_010322.1 PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN3115 beta-carotene hydroxylase; fatty acid hydroxylase 2963744 5870436 PputGB1_2647 Pseudomonas putida GB-1 fatty acid hydroxylase YP_001668882.1 2963214 R 76869 CDS YP_001668883.1 167033652 5870437 2964078..2964791 1 NC_010322.1 PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN3117 magnesium transporter, MgtC family; MgtC/SapB transporter 2964791 5870437 PputGB1_2648 Pseudomonas putida GB-1 MgtC/SapB transporter YP_001668883.1 2964078 D 76869 CDS YP_001668884.1 167033653 5870438 2964809..2965318 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3121 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2965318 5870438 PputGB1_2649 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001668884.1 2964809 D 76869 CDS YP_001668885.1 167033654 5870439 complement(2965320..2966300) 1 NC_010322.1 KEGG: pen:PSEEN2808 Tn4652 cointegrate resolution protein T; Tn4652 cointegrate resolution protein T 2966300 5870439 PputGB1_2650 Pseudomonas putida GB-1 Tn4652 cointegrate resolution protein T YP_001668885.1 2965320 R 76869 CDS YP_001668886.1 167033655 5870440 complement(2966526..2967767) 1 NC_010322.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: psa:PST_3570 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 2967767 5870440 PputGB1_2651 Pseudomonas putida GB-1 N-isopropylammelide isopropylaminohydrolase YP_001668886.1 2966526 R 76869 CDS YP_001668887.1 167033656 5870442 complement(2968985..2970250) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bte:BTH_II1641 cytosine permease; cytosine permease 2970250 codB 5870442 codB Pseudomonas putida GB-1 cytosine permease YP_001668887.1 2968985 R 76869 CDS YP_001668888.1 167033657 5870443 2970741..2971565 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: pfl:PFL_1381 hypothetical protein; class II aldolase/adducin family protein 2971565 5870443 PputGB1_2655 Pseudomonas putida GB-1 class II aldolase/adducin family protein YP_001668888.1 2970741 D 76869 CDS YP_001668889.1 167033658 5870444 2971576..2972544 1 NC_010322.1 KEGG: pfl:PFL_1382 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative; aliphatic sulfonate ABC transporter periplasmic substrate-binding protein 2972544 5870444 PputGB1_2656 Pseudomonas putida GB-1 aliphatic sulfonate ABC transporter periplasmic substrate-binding protein YP_001668889.1 2971576 D 76869 CDS YP_001668890.1 167033659 5870445 2972719..2975154 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psp:PSPPH_2892 TonB-dependent siderophore receptor, putative; TonB-dependent receptor plug 2975154 5870445 PputGB1_2657 Pseudomonas putida GB-1 TonB-dependent receptor plug YP_001668890.1 2972719 D 76869 CDS YP_001668891.1 167033660 5870446 2975205..2976524 1 NC_010322.1 KEGG: pfl:PFL_1391 monooxygenase, NtaA/SnaA/SoxA family; NtaA/SnaA/SoxA family monooxygenase 2976524 5870446 PputGB1_2658 Pseudomonas putida GB-1 NtaA/SnaA/SoxA family monooxygenase YP_001668891.1 2975205 D 76869 CDS YP_001668892.1 167033661 5870447 2976534..2978141 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: kra:Krad_0939 extracellular solute-binding protein family 5; extracellular solute-binding protein 2978141 5870447 PputGB1_2659 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668892.1 2976534 D 76869 CDS YP_001668893.1 167033662 5870448 2978138..2979097 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_0940 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2979097 5870448 PputGB1_2660 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668893.1 2978138 D 76869 CDS YP_001668894.1 167033663 5870449 2979094..2979936 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_0941 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2979936 5870449 PputGB1_2661 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668894.1 2979094 D 76869 CDS YP_001668895.1 167033664 5870450 2979933..2981549 1 NC_010322.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: nfa:nfa17450 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2981549 5870450 PputGB1_2662 Pseudomonas putida GB-1 ABC transporter-like protein YP_001668895.1 2979933 D 76869 CDS YP_001668896.1 167033665 5870451 complement(2981668..2982327) 1 NC_010322.1 PFAM: TENA/THI-4 domain protein; KEGG: nwi:Nwi_0858 TenA/THI-4 protein; TenA family transcription regulator 2982327 5870451 PputGB1_2663 Pseudomonas putida GB-1 TenA family transcription regulator YP_001668896.1 2981668 R 76869 CDS YP_001668897.1 167033666 5870452 complement(2982330..2982977) 1 NC_010322.1 PFAM: TENA/THI-4 domain protein; KEGG: pde:Pden_3673 transcriptional activator, TenA family; TenA family transcription regulator 2982977 5870452 PputGB1_2664 Pseudomonas putida GB-1 TenA family transcription regulator YP_001668897.1 2982330 R 76869 CDS YP_001668898.1 167033667 5870453 2983423..2986818 1 NC_010322.1 PFAM: multicopper oxidase type 2; KEGG: pen:PSEEN2124 hypothetical protein; multicopper oxidase type 2 2986818 5870453 PputGB1_2665 Pseudomonas putida GB-1 multicopper oxidase type 2 YP_001668898.1 2983423 D 76869 CDS YP_001668899.1 167033668 5870454 2986880..2987863 1 NC_010322.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2123 electron transporter, SCO1/SenC family protein/cytochrome c; electron transport protein SCO1/SenC 2987863 5870454 PputGB1_2666 Pseudomonas putida GB-1 electron transport protein SCO1/SenC YP_001668899.1 2986880 D 76869 CDS YP_001668900.1 167033669 5870455 2987945..2990272 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2876 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2990272 5870455 PputGB1_2667 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001668900.1 2987945 D 76869 CDS YP_001668901.1 167033670 5870456 2990260..2991132 1 NC_010322.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN2877 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2991132 5870456 PputGB1_2668 Pseudomonas putida GB-1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001668901.1 2990260 D 76869 CDS YP_001668902.1 167033671 5870457 2991198..2992148 1 NC_010322.1 PFAM: integrase family protein; KEGG: pap:PSPA7_3058 cointegrate resolution protein S; integrase family protein 2992148 5870457 PputGB1_2669 Pseudomonas putida GB-1 integrase family protein YP_001668902.1 2991198 D 76869 CDS YP_001668903.1 167033672 5870458 complement(2992138..2993862) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; SMP-30/Gluconolaconase/LRE domain protein; KR domain protein; KEGG: ent:Ent638_1528 short-chain dehydrogenase/reductase SDR; SMP-30/gluconolaconase/LRE domain-containing protein 2993862 5870458 PputGB1_2670 Pseudomonas putida GB-1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001668903.1 2992138 R 76869 CDS YP_001668904.1 167033673 5870459 2993990..2994889 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2994889 5870459 PputGB1_2671 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668904.1 2993990 D 76869 CDS YP_001668905.1 167033674 5870460 complement(2994896..2996041) 1 NC_010322.1 PFAM: glycerate kinase; KEGG: pen:PSEEN2878 glycerate kinase; glycerate kinase 2996041 5870460 PputGB1_2672 Pseudomonas putida GB-1 glycerate kinase YP_001668905.1 2994896 R 76869 CDS YP_001668906.1 167033675 5870461 complement(2996167..2997264) 1 NC_010322.1 PFAM: sugar diacid recognition domain protein; KEGG: pen:PSEEN2879 sugar diacid utilization regulator; transcriptional regulator CdaR 2997264 5870461 PputGB1_2673 Pseudomonas putida GB-1 transcriptional regulator CdaR YP_001668906.1 2996167 R 76869 CDS YP_001668907.1 167033676 5870462 2997428..2998756 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator superfamily transporter 2998756 5870462 PputGB1_2674 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668907.1 2997428 D 76869 CDS YP_001668908.1 167033677 5870463 2998943..3000463 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN3126 ferredoxin reductase component; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3000463 5870463 PputGB1_2675 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001668908.1 2998943 D 76869 CDS YP_001668909.1 167033678 5870464 3000536..3001546 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN3127 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3001546 5870464 PputGB1_2676 Pseudomonas putida GB-1 aldo/keto reductase YP_001668909.1 3000536 D 76869 CDS YP_001668910.1 167033679 5870465 3001642..3002739 1 NC_010322.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 3002739 5870465 PputGB1_2677 Pseudomonas putida GB-1 N-ethylmaleimide reductase YP_001668910.1 3001642 D 76869 CDS YP_001668911.1 167033680 5870466 complement(3002874..3003854) 1 NC_010322.1 PFAM: luciferase family protein; KEGG: bbr:BB2749 probable monooxygenase; luciferase family protein 3003854 5870466 PputGB1_2678 Pseudomonas putida GB-1 luciferase family protein YP_001668911.1 3002874 R 76869 CDS YP_001668912.1 167033681 5870467 complement(3003955..3004866) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3132 transcriptional regulator, LysR family; LysR family transcriptional regulator 3004866 5870467 PputGB1_2679 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668912.1 3003955 R 76869 CDS YP_001668913.1 167033682 5870468 complement(3004936..3006003) 1 NC_010322.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: pen:PSEEN3133 membrane bound hydrolase; membrane-bound metal-dependent hydrolase 3006003 5870468 PputGB1_2680 Pseudomonas putida GB-1 membrane-bound metal-dependent hydrolase YP_001668913.1 3004936 R 76869 CDS YP_001668914.1 167033683 5870469 complement(3006069..3007319) 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN3134 benzoate-specific porin; outer membrane porin 3007319 5870469 PputGB1_2681 Pseudomonas putida GB-1 outer membrane porin YP_001668914.1 3006069 R 76869 CDS YP_001668915.1 167033684 5870470 complement(3007374..3008591) 1 NC_010322.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: pen:PSEEN3135 benzoate membrane transport protein MFS superfamily); benzoate transporter 3008591 5870470 PputGB1_2682 Pseudomonas putida GB-1 benzoate transporter YP_001668915.1 3007374 R 76869 CDS YP_001668916.1 167033685 5870471 complement(3008693..3009607) 1 NC_010322.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 3009607 5870471 PputGB1_2683 Pseudomonas putida GB-1 catechol 1,2-dioxygenase YP_001668916.1 3008693 R 76869 CDS YP_001668917.1 167033686 5870472 complement(3009636..3010964) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3139 benzoate transport protein (MFS superfamily); major facilitator superfamily transporter 3010964 5870472 PputGB1_2684 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668917.1 3009636 R 76869 CDS YP_001668918.1 167033687 5870473 complement(3011022..3011783) 1 NC_010322.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 3011783 benD 5870473 benD Pseudomonas putida GB-1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase YP_001668918.1 3011022 R 76869 CDS YP_001668919.1 167033688 5870474 complement(3011929..3012939) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3141 benzoate 1,2-dioxygenase electron transfer component includes: ferredoxin; ferredoxin--NAD(+) reductase; oxidoreductase FAD/NAD(P)-binding subunit 3012939 5870474 PputGB1_2686 Pseudomonas putida GB-1 oxidoreductase FAD/NAD(P)-binding subunit YP_001668919.1 3011929 R 76869 CDS YP_001668920.1 167033689 5870475 complement(3013012..3013497) 1 NC_010322.1 KEGG: pen:PSEEN3142 benzoate 1,2-dioxygenase beta subunit; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; benzoate 1,2-dioxygenase small subunit 3013497 5870475 PputGB1_2687 Pseudomonas putida GB-1 benzoate 1,2-dioxygenase small subunit YP_001668920.1 3013012 R 76869 CDS YP_001668921.1 167033690 5870476 complement(3013494..3014867) 1 NC_010322.1 TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pen:PSEEN3143 benzoate 1,2-dioxygenase alpha subunit; benzoate 1,2-dioxygenase large subunit 3014867 5870476 PputGB1_2688 Pseudomonas putida GB-1 benzoate 1,2-dioxygenase large subunit YP_001668921.1 3013494 R 76869 CDS YP_001668922.1 167033691 5870477 complement(3014980..3015936) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3012 benABC operon transcriptional activator BenR; AraC family transcriptional regulator 3015936 5870477 PputGB1_2689 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668922.1 3014980 R 76869 CDS YP_001668923.1 167033692 5870478 complement(3016160..3017215) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pst:PSPTO_3056 transcriptional regulator, AraC family; AraC family transcriptional regulator 3017215 5870478 PputGB1_2690 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668923.1 3016160 R 76869 CDS YP_001668924.1 167033693 5870479 complement(3017294..3018322) 1 NC_010322.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 3018322 proX 5870479 proX Pseudomonas putida GB-1 glycine betaine transporter periplasmic subunit YP_001668924.1 3017294 R 76869 CDS YP_001668925.1 167033694 5870480 complement(3018393..3019346) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_3059 glycine betaine/L-proline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3019346 5870480 PputGB1_2692 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001668925.1 3018393 R 76869 CDS YP_001668926.1 167033695 5870481 complement(3019390..3020550) 1 NC_010322.1 KEGG: pst:PSPTO_3060 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 3020550 5870481 PputGB1_2693 Pseudomonas putida GB-1 glycine betaine/L-proline ABC transporter ATPase YP_001668926.1 3019390 R 76869 CDS YP_001668927.1 167033696 5870482 3020912..3021892 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_3061 transcriptional regulator, LysR family; LysR family transcriptional regulator 3021892 5870482 PputGB1_2694 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668927.1 3020912 D 76869 CDS YP_001668928.1 167033697 5870483 3021986..3022870 1 NC_010322.1 KEGG: pfo:Pfl_1951 hypothetical protein; hypothetical protein 3022870 5870483 PputGB1_2695 Pseudomonas putida GB-1 hypothetical protein YP_001668928.1 3021986 D 76869 CDS YP_001668929.1 167033698 5870484 complement(3022873..3023604) 1 NC_010322.1 KEGG: pfl:PFL_2174 hypothetical protein; hypothetical protein 3023604 5870484 PputGB1_2696 Pseudomonas putida GB-1 hypothetical protein YP_001668929.1 3022873 R 76869 CDS YP_001668930.1 167033699 5870485 complement(3023828..3024619) 1 NC_010322.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase; histidinol-phosphate phosphatase 3024619 5870485 PputGB1_2697 Pseudomonas putida GB-1 histidinol-phosphate phosphatase YP_001668930.1 3023828 R 76869 CDS YP_001668931.1 167033700 5870486 complement(3024682..3025248) 1 NC_010322.1 PFAM: protein of unknown function DUF204; KEGG: pau:PA14_26450 hypothetical protein; hypothetical protein 3025248 5870486 PputGB1_2698 Pseudomonas putida GB-1 hypothetical protein YP_001668931.1 3024682 R 76869 CDS YP_001668932.1 167033701 5870487 3025537..3026427 1 NC_010322.1 PFAM: UspA domain protein; KEGG: pen:PSEEN2890 universal stress protein; UspA domain-containing protein 3026427 5870487 PputGB1_2699 Pseudomonas putida GB-1 UspA domain-containing protein YP_001668932.1 3025537 D 76869 CDS YP_001668933.1 167033702 5870488 complement(3026499..3027020) 1 NC_010322.1 KEGG: pen:PSEEN2891 hypothetical protein; hypothetical protein 3027020 5870488 PputGB1_2700 Pseudomonas putida GB-1 hypothetical protein YP_001668933.1 3026499 R 76869 CDS YP_001668934.1 167033703 5870489 complement(3027217..3027963) 1 NC_010322.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pen:PSEEN2892 hypothetical protein; phytanoyl-CoA dioxygenase 3027963 5870489 PputGB1_2701 Pseudomonas putida GB-1 phytanoyl-CoA dioxygenase YP_001668934.1 3027217 R 76869 CDS YP_001668935.1 167033704 5870490 complement(3028018..3028461) 1 NC_010322.1 KEGG: pen:PSEEN2893 hypothetical protein; hypothetical protein 3028461 5870490 PputGB1_2702 Pseudomonas putida GB-1 hypothetical protein YP_001668935.1 3028018 R 76869 CDS YP_001668936.1 167033705 5870491 complement(3028595..3029464) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2894 transcriptional regulator, LysR family; LysR family transcriptional regulator 3029464 5870491 PputGB1_2703 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668936.1 3028595 R 76869 CDS YP_001668937.1 167033706 5870492 3029572..3030957 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2895 aldehyde dehydrogenase; aldehyde dehydrogenase 3030957 5870492 PputGB1_2704 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001668937.1 3029572 D 76869 CDS YP_001668938.1 167033707 5870493 complement(3030996..3032906) 1 NC_010322.1 KEGG: pca:Pcar_0793 hypothetical protein; hypothetical protein 3032906 5870493 PputGB1_2705 Pseudomonas putida GB-1 hypothetical protein YP_001668938.1 3030996 R 76869 CDS YP_001668939.1 167033708 5870494 complement(3032966..3033865) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2898 transcriptional regulator, AraC family; AraC family transcriptional regulator 3033865 5870494 PputGB1_2706 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668939.1 3032966 R 76869 CDS YP_001668940.1 167033709 5870495 3034049..3035407 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2899 glutamine synthetase; glutamate--putrescine ligase 3035407 5870495 PputGB1_2707 Pseudomonas putida GB-1 glutamate--putrescine ligase YP_001668940.1 3034049 D 76869 CDS YP_001668941.1 167033710 5870496 3035473..3036561 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2900 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 3036561 5870496 PputGB1_2708 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001668941.1 3035473 D 76869 CDS YP_001668942.1 167033711 5870497 3036575..3037870 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2901 oxidoreductase; FAD dependent oxidoreductase 3037870 5870497 PputGB1_2709 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001668942.1 3036575 D 76869 CDS YP_001668943.1 167033712 5870498 3038040..3038717 1 NC_010322.1 KEGG: pen:PSEEN2904 hypothetical protein; hypothetical protein 3038717 5870498 PputGB1_2710 Pseudomonas putida GB-1 hypothetical protein YP_001668943.1 3038040 D 76869 CDS YP_001668944.1 167033713 5870499 complement(3038787..3040163) 1 NC_010322.1 KEGG: pen:PSEEN2454 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 3040163 5870499 PputGB1_2711 Pseudomonas putida GB-1 L-serine dehydratase 1 YP_001668944.1 3038787 R 76869 CDS YP_001668945.1 167033714 5870500 3040310..3041251 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2453 transcriptional regulator, LysR family; LysR family transcriptional regulator 3041251 5870500 PputGB1_2712 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668945.1 3040310 D 76869 CDS YP_001668946.1 167033715 5870501 complement(3041262..3042683) 1 NC_010322.1 KEGG: pen:PSEEN2452 lipopolysaccharide biosynthesis sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 3042683 5870501 PputGB1_2713 Pseudomonas putida GB-1 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_001668946.1 3041262 R 76869 CDS YP_001668947.1 167033716 5870502 complement(3042861..3043613) 1 NC_010322.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: pen:PSEEN2451 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase 3043613 5870502 PputGB1_2714 Pseudomonas putida GB-1 WecB/TagA/CpsF family glycosyl transferase YP_001668947.1 3042861 R 76869 CDS YP_001668948.1 167033717 5870503 complement(3043613..3044800) 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2450 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3044800 5870503 PputGB1_2715 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001668948.1 3043613 R 76869 CDS YP_001668949.1 167033718 5870504 complement(3044797..3045999) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN2449 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 protein 3045999 5870504 PputGB1_2716 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001668949.1 3044797 R 76869 CDS YP_001668950.1 167033719 5870505 complement(3046049..3047053) 1 NC_010322.1 PFAM: protein of unknown function DUF535; KEGG: pen:PSEEN2448 glycosyl transferase; hypothetical protein 3047053 5870505 PputGB1_2717 Pseudomonas putida GB-1 hypothetical protein YP_001668950.1 3046049 R 76869 CDS YP_001668951.1 167033720 5870506 complement(3047063..3048040) 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2447 glycosyl transferase, group 2 family; glycosyl transferase family protein 3048040 5870506 PputGB1_2718 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001668951.1 3047063 R 76869 CDS YP_001668952.1 167033721 5870507 complement(3048046..3048570) 1 NC_010322.1 KEGG: pen:PSEEN2446 serine O-acetyltransferase; serine O-acetyltransferase 3048570 5870507 PputGB1_2719 Pseudomonas putida GB-1 serine O-acetyltransferase YP_001668952.1 3048046 R 76869 CDS YP_001668953.1 167033722 5870508 complement(3048579..3049535) 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2445 glycosyl transferase; glycosyl transferase family protein 3049535 5870508 PputGB1_2720 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001668953.1 3048579 R 76869 CDS YP_001668954.1 167033723 5870509 complement(3049528..3050145) 1 NC_010322.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2444 hypothetical protein; hexapaptide repeat-containing transferase 3050145 5870509 PputGB1_2721 Pseudomonas putida GB-1 hexapaptide repeat-containing transferase YP_001668954.1 3049528 R 76869 CDS YP_001668955.1 167033724 5870510 complement(3050250..3051716) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN2443 oxidoreductase; GMC oxidoreductase 3051716 5870510 PputGB1_2722 Pseudomonas putida GB-1 GMC oxidoreductase YP_001668955.1 3050250 R 76869 CDS YP_001668956.1 167033725 5870511 complement(3051953..3053329) 1 NC_010322.1 PFAM: polysaccharide biosynthesis protein; KEGG: pen:PSEEN2442 transporter; polysaccharide biosynthesis protein 3053329 5870511 PputGB1_2723 Pseudomonas putida GB-1 polysaccharide biosynthesis protein YP_001668956.1 3051953 R 76869 CDS YP_001668957.1 167033726 5870512 3053425..3054951 1 NC_010322.1 KEGG: pen:PSEEN2441 hypothetical protein; hypothetical protein 3054951 5870512 PputGB1_2724 Pseudomonas putida GB-1 hypothetical protein YP_001668957.1 3053425 D 76869 CDS YP_001668958.1 167033727 5870513 3054956..3057556 1 NC_010322.1 KEGG: pen:PSEEN2440 hypothetical protein; hypothetical protein 3057556 5870513 PputGB1_2725 Pseudomonas putida GB-1 hypothetical protein YP_001668958.1 3054956 D 76869 CDS YP_001668959.1 167033728 5870514 3057662..3058636 1 NC_010322.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN2439 UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase); UDP-glucose 4-epimerase 3058636 5870514 PputGB1_2726 Pseudomonas putida GB-1 UDP-glucose 4-epimerase YP_001668959.1 3057662 D 76869 CDS YP_001668960.1 167033729 5870515 complement(3058769..3059575) 1 NC_010322.1 KEGG: pen:PSEEN2946 exopolysaccharide biosynthesis related tyrosine-protein kinase; non-specific protein-tyrosine kinase 3059575 5870515 PputGB1_2727 Pseudomonas putida GB-1 non-specific protein-tyrosine kinase YP_001668960.1 3058769 R 76869 CDS YP_001668961.1 167033730 5870516 complement(3059587..3061149) 1 NC_010322.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN2947 exopolysaccharide transport protein; lipopolysaccharide biosynthesis protein 3061149 5870516 PputGB1_2728 Pseudomonas putida GB-1 lipopolysaccharide biosynthesis protein YP_001668961.1 3059587 R 76869 CDS YP_001668962.1 167033731 5870517 complement(3061169..3062284) 1 NC_010322.1 KEGG: pen:PSEEN2948 hypothetical protein; hypothetical protein 3062284 5870517 PputGB1_2729 Pseudomonas putida GB-1 hypothetical protein YP_001668962.1 3061169 R 76869 CDS YP_001668963.1 167033732 5870518 complement(3062310..3062867) 1 NC_010322.1 PFAM: polysaccharide export protein; KEGG: pen:PSEEN2949 polysaccharide export protein; polysaccharide export protein 3062867 5870518 PputGB1_2730 Pseudomonas putida GB-1 polysaccharide export protein YP_001668963.1 3062310 R 76869 CDS YP_001668964.1 167033733 5870519 complement(3063129..3063305) 1 NC_010322.1 KEGG: pen:PSEEN2950 hypothetical protein; hypothetical protein 3063305 5870519 PputGB1_2731 Pseudomonas putida GB-1 hypothetical protein YP_001668964.1 3063129 R 76869 CDS YP_001668965.1 167033734 5870520 complement(3063557..3064099) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2382 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 3064099 5870520 PputGB1_2732 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001668965.1 3063557 R 76869 CDS YP_001668966.1 167033735 5870521 complement(3064179..3065597) 1 NC_010322.1 PFAM: short chain fatty acid transporter; KEGG: pen:PSEEN2481 short-chain fatty acid transporter (scFAT family); short chain fatty acid transporter 3065597 5870521 PputGB1_2733 Pseudomonas putida GB-1 short chain fatty acid transporter YP_001668966.1 3064179 R 76869 CDS YP_001668967.1 167033736 5870522 complement(3065750..3066406) 1 NC_010322.1 KEGG: pen:PSEEN2465 acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3066406 5870522 PputGB1_2734 Pseudomonas putida GB-1 3-oxoacid CoA-transferase subunit B YP_001668967.1 3065750 R 76869 CDS YP_001668968.1 167033737 5870523 complement(3066441..3067139) 1 NC_010322.1 KEGG: pen:PSEEN2464 acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3067139 5870523 PputGB1_2735 Pseudomonas putida GB-1 3-oxoacid CoA-transferase subunit A YP_001668968.1 3066441 R 76869 CDS YP_001668969.1 167033738 5870524 3067280..3068185 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2463 transcriptional regulator, LysR family; LysR family transcriptional regulator 3068185 5870524 PputGB1_2736 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668969.1 3067280 D 76869 CDS YP_001668970.1 167033739 5870525 3068173..3068994 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN2462 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3068994 5870525 PputGB1_2737 Pseudomonas putida GB-1 aldo/keto reductase YP_001668970.1 3068173 D 76869 CDS YP_001668971.1 167033740 5870526 complement(3069053..3072133) 1 NC_010322.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 3072133 dnaE2 5870526 dnaE2 Pseudomonas putida GB-1 error-prone DNA polymerase YP_001668971.1 3069053 R 76869 CDS YP_001668972.1 167033741 5870527 complement(3072130..3073548) 1 NC_010322.1 KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; hypothetical protein 3073548 5870527 PputGB1_2739 Pseudomonas putida GB-1 hypothetical protein YP_001668972.1 3072130 R 76869 CDS YP_001668973.1 167033742 5870528 complement(3073555..3074175) 1 NC_010322.1 KEGG: pen:PSEEN2413 hypothetical protein; hypothetical protein 3074175 5870528 PputGB1_2740 Pseudomonas putida GB-1 hypothetical protein YP_001668973.1 3073555 R 76869 CDS YP_001668974.1 167033743 5870529 complement(3074175..3074792) 1 NC_010322.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3074792 5870529 PputGB1_2741 Pseudomonas putida GB-1 LexA repressor YP_001668974.1 3074175 R 76869 CDS YP_001668975.1 167033744 5870530 3074885..3075541 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN3015 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 3075541 5870530 PputGB1_2742 Pseudomonas putida GB-1 HAD family hydrolase YP_001668975.1 3074885 D 76869 CDS YP_001668976.1 167033745 5870531 3075557..3076468 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5811 malonate utilization transcriptional regulator; LysR family transcriptional regulator 3076468 5870531 PputGB1_2743 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001668976.1 3075557 D 76869 CDS YP_001668977.1 167033746 5870532 complement(3076505..3078565) 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2375 putative ferric-citrate TonB-dependent receptor; TonB-dependent receptor 3078565 5870532 PputGB1_2744 Pseudomonas putida GB-1 TonB-dependent receptor YP_001668977.1 3076505 R 76869 CDS YP_001668978.1 167033747 5870533 complement(3078669..3080018) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_2512 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3080018 5870533 PputGB1_2745 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668978.1 3078669 R 76869 CDS YP_001668979.1 167033748 5870534 complement(3080053..3080376) 1 NC_010322.1 PFAM: NIPSNAP family containing protein; KEGG: pna:Pnap_2711 NIPSNAP family containing protein; NIPSNAP family protein 3080376 5870534 PputGB1_2746 Pseudomonas putida GB-1 NIPSNAP family protein YP_001668979.1 3080053 R 76869 CDS YP_001668980.1 167033749 5870535 complement(3080376..3082094) 1 NC_010322.1 proposed role in polysaccahride synthesis; putative succinate dehydrogenase 3082094 5870535 PputGB1_2747 Pseudomonas putida GB-1 putative succinate dehydrogenase YP_001668980.1 3080376 R 76869 CDS YP_001668981.1 167033750 5870536 complement(3082091..3082918) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2709 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3082918 5870536 PputGB1_2748 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001668981.1 3082091 R 76869 CDS YP_001668982.1 167033751 5870537 3083096..3083968 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: psa:PST_2119 transcriptional regulator PobR; AraC family transcriptional regulator 3083968 5870537 PputGB1_2749 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001668982.1 3083096 D 76869 CDS YP_001668983.1 167033752 5870538 complement(3083995..3084768) 1 NC_010322.1 PFAM: regulatory protein IclR; KEGG: pfo:Pfl_1294 transcriptional regulator, IclR family; IclR family transcriptional regulator 3084768 5870538 PputGB1_2750 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001668983.1 3083995 R 76869 CDS YP_001668984.1 167033753 5870539 complement(3084834..3086291) 1 NC_010322.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3086291 5870539 PputGB1_2751 Pseudomonas putida GB-1 amidase YP_001668984.1 3084834 R 76869 CDS YP_001668985.1 167033754 5870540 complement(3086288..3087598) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1292 general substrate transporter; major facilitator superfamily transporter 3087598 5870540 PputGB1_2752 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001668985.1 3086288 R 76869 CDS YP_001668986.1 167033755 5870541 complement(3087682..3088857) 1 NC_010322.1 KEGG: pfo:Pfl_1291 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 3088857 5870541 PputGB1_2753 Pseudomonas putida GB-1 amidohydrolase YP_001668986.1 3087682 R 76869 CDS YP_001668987.1 167033756 5870543 complement(3091606..3092325) 1 NC_010322.1 hypothetical protein 3092325 5870543 PputGB1_2757 Pseudomonas putida GB-1 hypothetical protein YP_001668987.1 3091606 R 76869 CDS YP_001668988.1 167033757 5870544 complement(3092337..3093557) 1 NC_010322.1 PFAM: PAAR repeat-containing protein; KEGG: psp:PSPPH_2282 rhs family protein; PAAR repeat-containing protein 3093557 5870544 PputGB1_2758 Pseudomonas putida GB-1 PAAR repeat-containing protein YP_001668988.1 3092337 R 76869 CDS YP_001668989.1 167033758 5870545 complement(3093554..3094147) 1 NC_010322.1 PFAM: Domain of unknown function DUF1795; KEGG: psp:PSPPH_2281 hypothetical protein; hypothetical protein 3094147 5870545 PputGB1_2759 Pseudomonas putida GB-1 hypothetical protein YP_001668989.1 3093554 R 76869 CDS YP_001668990.1 167033759 5870546 complement(3094169..3096010) 1 NC_010322.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: psp:PSPPH_5069 rhs family protein; ImpA family type VI secretion-associated protein 3096010 5870546 PputGB1_2760 Pseudomonas putida GB-1 ImpA family type VI secretion-associated protein YP_001668990.1 3094169 R 76869 CDS YP_001668991.1 167033760 5870547 complement(3096203..3097318) 1 NC_010322.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_4977 ADP-ribosylglycohydrolase; ADP-ribosylation/crystallin J1 3097318 5870547 PputGB1_2761 Pseudomonas putida GB-1 ADP-ribosylation/crystallin J1 YP_001668991.1 3096203 R 76869 CDS YP_001668992.1 167033761 5870548 complement(3097315..3098802) 1 NC_010322.1 KEGG: psp:PSPPH_5068 hypothetical protein; hypothetical protein 3098802 5870548 PputGB1_2762 Pseudomonas putida GB-1 hypothetical protein YP_001668992.1 3097315 R 76869 CDS YP_001668993.1 167033762 5870549 3099710..3100459 1 NC_010322.1 KEGG: psp:PSPPH_0135 hypothetical protein; hypothetical protein 3100459 5870549 PputGB1_2763 Pseudomonas putida GB-1 hypothetical protein YP_001668993.1 3099710 D 76869 CDS YP_001668994.1 167033763 5870550 3100524..3101063 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: psp:PSPPH_0134 hypothetical protein; type VI secretion protein 3101063 5870550 PputGB1_2764 Pseudomonas putida GB-1 type VI secretion protein YP_001668994.1 3100524 D 76869 CDS YP_001668995.1 167033764 5870551 3101078..3102580 1 NC_010322.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: psp:PSPPH_0133 hypothetical protein; EvpB family type VI secretion protein 3102580 5870551 PputGB1_2765 Pseudomonas putida GB-1 EvpB family type VI secretion protein YP_001668995.1 3101078 D 76869 CDS YP_001668996.1 167033765 5870552 3102607..3103089 1 NC_010322.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: psp:PSPPH_0132 protein of unknown function (DUF1316) subfamily; type VI secretion system lysozyme-like protein 3103089 5870552 PputGB1_2766 Pseudomonas putida GB-1 type VI secretion system lysozyme-like protein YP_001668996.1 3102607 D 76869 CDS YP_001668997.1 167033766 5870553 3103089..3104909 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879; type VI secretion protein 3104909 5870553 PputGB1_2767 Pseudomonas putida GB-1 type VI secretion protein YP_001668997.1 3103089 D 76869 CDS YP_001668998.1 167033767 5870554 3104873..3105943 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: psp:PSPPH_0130 ImpH; type VI secretion protein 3105943 5870554 PputGB1_2768 Pseudomonas putida GB-1 type VI secretion protein YP_001668998.1 3104873 D 76869 CDS YP_001668999.1 167033768 5870555 3105940..3108537 1 NC_010322.1 KEGG: psp:PSPPH_0129 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 3108537 5870555 PputGB1_2769 Pseudomonas putida GB-1 type VI secretion ATPase YP_001668999.1 3105940 D 76869 CDS YP_001669000.1 167033769 5870556 3108562..3109284 1 NC_010322.1 KEGG: psp:PSPPH_0128 lipoprotein, putative; hypothetical protein 3109284 5870556 PputGB1_2770 Pseudomonas putida GB-1 hypothetical protein YP_001669000.1 3108562 D 76869 CDS YP_001669001.1 167033770 5870557 3109281..3110624 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: psb:Psyr_4960 protein of unknown function DUF876; type VI secretion protein 3110624 5870557 PputGB1_2771 Pseudomonas putida GB-1 type VI secretion protein YP_001669001.1 3109281 D 76869 CDS YP_001669002.1 167033771 5870558 3110621..3111337 1 NC_010322.1 KEGG: psp:PSPPH_0126 hypothetical protein; hypothetical protein 3111337 5870558 PputGB1_2772 Pseudomonas putida GB-1 hypothetical protein YP_001669002.1 3110621 D 76869 CDS YP_001669003.1 167033772 5870559 3111368..3115165 1 NC_010322.1 TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: psp:PSPPH_0125 ImcF-related family; type VI secretion protein IcmF 3115165 5870559 PputGB1_2773 Pseudomonas putida GB-1 type VI secretion protein IcmF YP_001669003.1 3111368 D 76869 CDS YP_001669004.1 167033773 5870560 3115162..3116070 1 NC_010322.1 KEGG: psp:PSPPH_0124 hypothetical protein; hypothetical protein 3116070 5870560 PputGB1_2774 Pseudomonas putida GB-1 hypothetical protein YP_001669004.1 3115162 D 76869 CDS YP_001669005.1 167033774 5870561 3116067..3118562 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0123 OmpA domain protein; OmpA/MotB domain-containing protein 3118562 5870561 PputGB1_2775 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001669005.1 3116067 D 76869 CDS YP_001669006.1 167033775 5870562 3118706..3119224 1 NC_010322.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_0122 hypothetical protein; Hcp1 family type VI secretion system effector 3119224 5870562 PputGB1_2776 Pseudomonas putida GB-1 Hcp1 family type VI secretion system effector YP_001669006.1 3118706 D 76869 CDS YP_001669007.1 167033776 5870563 3119309..3120406 1 NC_010322.1 TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: psp:PSPPH_0121 ImpA-related N-terminal family; ImpA family type VI secretion-associated protein 3120406 5870563 PputGB1_2777 Pseudomonas putida GB-1 ImpA family type VI secretion-associated protein YP_001669007.1 3119309 D 76869 CDS YP_001669008.1 167033777 5870564 3120521..3123037 1 NC_010322.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pfo:Pfl_3139 excinuclease ABC, A subunit; excinuclease ABC subunit A 3123037 5870564 PputGB1_2778 Pseudomonas putida GB-1 excinuclease ABC subunit A YP_001669008.1 3120521 D 76869 CDS YP_001669009.1 167033778 5870565 3123125..3123631 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_3796 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor 3123631 5870565 PputGB1_2779 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669009.1 3123125 D 76869 CDS YP_001669010.1 167033779 5870566 3123631..3124593 1 NC_010322.1 PFAM: FecR protein; KEGG: pfo:Pfl_3797 putative FecR; anti-FecI sigma factor FecR 3124593 5870566 PputGB1_2780 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669010.1 3123631 D 76869 CDS YP_001669011.1 167033780 5870567 3124695..3127112 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_3798 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3127112 5870567 PputGB1_2781 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669011.1 3124695 D 76869 CDS YP_001669012.1 167033781 5870568 complement(3127229..3128104) 1 NC_010322.1 PFAM: Auxin Efflux Carrier; KEGG: pau:PA14_42100 putative permease; auxin efflux carrier 3128104 5870568 PputGB1_2782 Pseudomonas putida GB-1 auxin efflux carrier YP_001669012.1 3127229 R 76869 CDS YP_001669013.1 167033782 5870569 3128531..3129826 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2678 hypothetical protein; major facilitator superfamily transporter 3129826 5870569 PputGB1_2783 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669013.1 3128531 D 76869 CDS YP_001669014.1 167033783 5870570 3129939..3130247 1 NC_010322.1 KEGG: pen:PSEEN2677 hypothetical protein; hypothetical protein 3130247 5870570 PputGB1_2784 Pseudomonas putida GB-1 hypothetical protein YP_001669014.1 3129939 D 76869 CDS YP_001669015.1 167033784 5870571 3130296..3130847 1 NC_010322.1 PFAM: PEBP family protein; KEGG: reu:Reut_B3733 YbhB and YbcL; PEBP family protein 3130847 5870571 PputGB1_2785 Pseudomonas putida GB-1 PEBP family protein YP_001669015.1 3130296 D 76869 CDS YP_001669016.1 167033785 5870572 3131402..3132463 1 NC_010322.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3132463 5870572 PputGB1_2786 Pseudomonas putida GB-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001669016.1 3131402 D 76869 CDS YP_001669017.1 167033786 5870573 3132542..3132823 1 NC_010322.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: psb:Psyr_2901 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3132823 5870573 PputGB1_2787 Pseudomonas putida GB-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001669017.1 3132542 D 76869 CDS YP_001669018.1 167033787 5870574 3132841..3134763 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3152 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3134763 5870574 PputGB1_2788 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669018.1 3132841 D 76869 CDS YP_001669019.1 167033788 5870575 3134760..3135818 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3153 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3135818 5870575 PputGB1_2789 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669019.1 3134760 D 76869 CDS YP_001669020.1 167033789 5870576 3135818..3136834 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3154 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3136834 5870576 PputGB1_2790 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669020.1 3135818 D 76869 CDS YP_001669021.1 167033790 5870577 3136854..3138242 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3155 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 3138242 5870577 PputGB1_2791 Pseudomonas putida GB-1 putative sigma-54 specific transcriptional regulator YP_001669021.1 3136854 D 76869 CDS YP_001669022.1 167033791 5870578 3138512..3139903 1 NC_010322.1 PFAM: Citrate transporter; KEGG: pen:PSEEN3157 hypothetical protein; citrate transporter 3139903 5870578 PputGB1_2792 Pseudomonas putida GB-1 citrate transporter YP_001669022.1 3138512 D 76869 CDS YP_001669023.1 167033792 5870579 3139914..3140684 1 NC_010322.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3140684 5870579 PputGB1_2793 Pseudomonas putida GB-1 3-hydroxybutyrate dehydrogenase YP_001669023.1 3139914 D 76869 CDS YP_001669024.1 167033793 5870580 3140740..3141219 1 NC_010322.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3141219 5870580 PputGB1_2794 Pseudomonas putida GB-1 ecotin YP_001669024.1 3140740 D 76869 CDS YP_001669025.1 167033794 5870581 3141287..3143245 1 NC_010322.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3143245 5870581 PputGB1_2795 Pseudomonas putida GB-1 acetoacetyl-CoA synthetase YP_001669025.1 3141287 D 76869 CDS YP_001669026.1 167033795 5870582 3143278..3143553 1 NC_010322.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3160 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3143553 5870582 PputGB1_2796 Pseudomonas putida GB-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001669026.1 3143278 D 76869 CDS YP_001669027.1 167033796 5870583 3143674..3146130 1 NC_010322.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN3161 outer membrane autotransporter; outer membrane autotransporter 3146130 5870583 PputGB1_2797 Pseudomonas putida GB-1 outer membrane autotransporter YP_001669027.1 3143674 D 76869 CDS YP_001669028.1 167033797 5870584 complement(3146127..3146750) 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3162 transporter, LysE family; lysine exporter protein LysE/YggA 3146750 5870584 PputGB1_2798 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001669028.1 3146127 R 76869 CDS YP_001669029.1 167033798 5870585 3146882..3147691 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3163 transcriptional regulator, AraC family; AraC family transcriptional regulator 3147691 5870585 PputGB1_2799 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669029.1 3146882 D 76869 CDS YP_001669030.1 167033799 5870586 3147807..3148421 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA 3148421 5870586 PputGB1_2800 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001669030.1 3147807 D 76869 CDS YP_001669031.1 167033800 5870587 complement(3148369..3149094) 1 NC_010322.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; metallophosphoesterase 3149094 5870587 PputGB1_2801 Pseudomonas putida GB-1 metallophosphoesterase YP_001669031.1 3148369 R 76869 CDS YP_001669032.1 167033801 5870588 3149170..3149685 1 NC_010322.1 KEGG: pen:PSEEN3166 hypothetical protein; hypothetical protein 3149685 5870588 PputGB1_2802 Pseudomonas putida GB-1 hypothetical protein YP_001669032.1 3149170 D 76869 CDS YP_001669033.1 167033802 5870589 3149761..3150504 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rca:Rcas_0871 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3150504 5870589 PputGB1_2803 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001669033.1 3149761 D 76869 CDS YP_001669034.1 167033803 5870590 3150501..3150743 1 NC_010322.1 KEGG: pen:PSEEN3168 hypothetical protein; hypothetical protein 3150743 5870590 PputGB1_2804 Pseudomonas putida GB-1 hypothetical protein YP_001669034.1 3150501 D 76869 CDS YP_001669035.1 167033804 5870591 complement(3150748..3151248) 1 NC_010322.1 KEGG: pen:PSEEN3169 methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase); TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 3151248 5870591 PputGB1_2805 Pseudomonas putida GB-1 methylated-DNA--protein-cysteine methyltransferase YP_001669035.1 3150748 R 76869 CDS YP_001669036.1 167033805 5870592 complement(3151319..3152128) 1 NC_010322.1 KEGG: psb:Psyr_2496 lipopolysaccharide core biosynthesis domain protein; lipopolysaccharide core biosynthesis domain-containing protein 3152128 5870592 PputGB1_2806 Pseudomonas putida GB-1 lipopolysaccharide core biosynthesis domain-containing protein YP_001669036.1 3151319 R 76869 CDS YP_001669037.1 167033806 5870593 complement(3152283..3153923) 1 NC_010322.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 3153923 5870593 PputGB1_2807 Pseudomonas putida GB-1 long-chain-fatty-acid--CoA ligase YP_001669037.1 3152283 R 76869 CDS YP_001669038.1 167033807 5870594 complement(3153935..3155713) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_4079 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3155713 5870594 PputGB1_2808 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001669038.1 3153935 R 76869 CDS YP_001669039.1 167033808 5870595 complement(3155706..3158171) 1 NC_010322.1 KEGG: psa:PST_0618 transporter, putative; transporter 3158171 5870595 PputGB1_2809 Pseudomonas putida GB-1 transporter YP_001669039.1 3155706 R 76869 CDS YP_001669040.1 167033809 5870596 complement(3158187..3159182) 1 NC_010322.1 KEGG: psa:PST_0617 glycosyl hydrolase; glycosyl hydrolase 3159182 5870596 PputGB1_2810 Pseudomonas putida GB-1 glycosyl hydrolase YP_001669040.1 3158187 R 76869 CDS YP_001669041.1 167033810 5870597 complement(3159204..3160562) 1 NC_010322.1 PFAM: protein of unknown function DUF1329; KEGG: psa:PST_0616 hypothetical protein; hypothetical protein 3160562 5870597 PputGB1_2811 Pseudomonas putida GB-1 hypothetical protein YP_001669041.1 3159204 R 76869 CDS YP_001669042.1 167033811 5870598 complement(3160601..3162556) 1 NC_010322.1 PFAM: protein of unknown function DUF1302; KEGG: psa:PST_0615 hypothetical protein; hypothetical protein 3162556 5870598 PputGB1_2812 Pseudomonas putida GB-1 hypothetical protein YP_001669042.1 3160601 R 76869 CDS YP_001669043.1 167033812 5870599 complement(3162631..3163209) 1 NC_010322.1 PFAM: protein of unknown function DUF1234; KEGG: reu:Reut_A2133 protein of unknown function DUF1234; hypothetical protein 3163209 5870599 PputGB1_2813 Pseudomonas putida GB-1 hypothetical protein YP_001669043.1 3162631 R 76869 CDS YP_001669044.1 167033813 5870600 3163403..3164410 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_A2149 helix-turn-helix, AraC type; AraC family transcriptional regulator 3164410 5870600 PputGB1_2814 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669044.1 3163403 D 76869 CDS YP_001669045.1 167033814 5870601 complement(3164435..3164758) 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: mgi:Mflv_3012 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 3164758 5870601 PputGB1_2815 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001669045.1 3164435 R 76869 CDS YP_001669046.1 167033815 5870602 complement(3164755..3165408) 1 NC_010322.1 PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2145 DsbA oxidoreductase; DSBA oxidoreductase 3165408 5870602 PputGB1_2816 Pseudomonas putida GB-1 DSBA oxidoreductase YP_001669046.1 3164755 R 76869 CDS YP_001669047.1 167033816 5870603 complement(3165413..3166693) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_A2132 general substrate transporter:major facilitator superfamily MFS_1; major facilitator superfamily transporter 3166693 5870603 PputGB1_2817 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669047.1 3165413 R 76869 CDS YP_001669048.1 167033817 5870604 complement(3166886..3167938) 1 NC_010322.1 PFAM: protein of unknown function DUF849; KEGG: reh:H16_B2526 hypothetical protein; hypothetical protein 3167938 5870604 PputGB1_2818 Pseudomonas putida GB-1 hypothetical protein YP_001669048.1 3166886 R 76869 CDS YP_001669049.1 167033818 5870605 complement(3167984..3168832) 1 NC_010322.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A2147 taurine dioxygenase; taurine dioxygenase 3168832 5870605 PputGB1_2819 Pseudomonas putida GB-1 taurine dioxygenase YP_001669049.1 3167984 R 76869 CDS YP_001669050.1 167033819 5870606 complement(3168846..3169826) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_1716 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3169826 5870606 PputGB1_2820 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669050.1 3168846 R 76869 CDS YP_001669051.1 167033820 5870607 complement(3169983..3170399) 1 NC_010322.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pau:PA14_29010 putative transcriptional regulator, MerR family; MerR family transcriptional regulator 3170399 5870607 PputGB1_2821 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001669051.1 3169983 R 76869 CDS YP_001669052.1 167033821 5870608 3170512..3171747 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pmy:Pmen_3221 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3171747 5870608 PputGB1_2822 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001669052.1 3170512 D 76869 CDS YP_001669053.1 167033822 5870609 3171813..3172169 1 NC_010322.1 PFAM: SmpA/OmlA domain protein; KEGG: pap:PSPA7_5598 osmotically inducible lipoprotein OsmE; SmpA/OmlA domain-containing protein 3172169 5870609 PputGB1_2823 Pseudomonas putida GB-1 SmpA/OmlA domain-containing protein YP_001669053.1 3171813 D 76869 CDS YP_001669054.1 167033823 5870610 complement(3172171..3172530) 1 NC_010322.1 KEGG: pfo:Pfl_3288 hypothetical protein; hypothetical protein 3172530 5870610 PputGB1_2824 Pseudomonas putida GB-1 hypothetical protein YP_001669054.1 3172171 R 76869 CDS YP_001669055.1 167033824 5870611 3172790..3173104 1 NC_010322.1 hypothetical protein 3173104 5870611 PputGB1_2825 Pseudomonas putida GB-1 hypothetical protein YP_001669055.1 3172790 D 76869 CDS YP_001669056.1 167033825 5870612 3173216..3173416 1 NC_010322.1 hypothetical protein 3173416 5870612 PputGB1_2826 Pseudomonas putida GB-1 hypothetical protein YP_001669056.1 3173216 D 76869 CDS YP_001669057.1 167033826 5870613 3173520..3173735 1 NC_010322.1 hypothetical protein 3173735 5870613 PputGB1_2827 Pseudomonas putida GB-1 hypothetical protein YP_001669057.1 3173520 D 76869 CDS YP_001669058.1 167033827 5870614 complement(3173794..3173916) 1 NC_010322.1 hypothetical protein 3173916 5870614 PputGB1_2828 Pseudomonas putida GB-1 hypothetical protein YP_001669058.1 3173794 R 76869 CDS YP_001669059.1 167033828 5870615 complement(3173974..3174309) 1 NC_010322.1 hypothetical protein 3174309 5870615 PputGB1_2829 Pseudomonas putida GB-1 hypothetical protein YP_001669059.1 3173974 R 76869 CDS YP_001669060.1 167033829 5870616 complement(3174377..3174907) 1 NC_010322.1 KEGG: yli:YALI0A15081g hypothetical protein; acetyltransferase 3174907 5870616 PputGB1_2830 Pseudomonas putida GB-1 acetyltransferase YP_001669060.1 3174377 R 76869 CDS YP_001669061.1 167033830 5870617 complement(3175061..3175429) 1 NC_010322.1 KEGG: pen:PSEEN3170 hypothetical protein; hypothetical protein 3175429 5870617 PputGB1_2831 Pseudomonas putida GB-1 hypothetical protein YP_001669061.1 3175061 R 76869 CDS YP_001669062.1 167033831 5870618 complement(3175898..3175996) 1 NC_010322.1 hypothetical protein 3175996 5870618 PputGB1_2832 Pseudomonas putida GB-1 hypothetical protein YP_001669062.1 3175898 R 76869 CDS YP_001669063.1 167033832 5870619 complement(3176104..3176391) 1 NC_010322.1 KEGG: syn:slr0334 hypothetical protein; hypothetical protein 3176391 5870619 PputGB1_2833 Pseudomonas putida GB-1 hypothetical protein YP_001669063.1 3176104 R 76869 CDS YP_001669064.1 167033833 5870620 3176636..3177325 1 NC_010322.1 PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN2273 hypothetical protein; hypothetical protein 3177325 5870620 PputGB1_2834 Pseudomonas putida GB-1 hypothetical protein YP_001669064.1 3176636 D 76869 CDS YP_001669065.1 167033834 5870621 3177411..3177575 1 NC_010322.1 hypothetical protein 3177575 5870621 PputGB1_2835 Pseudomonas putida GB-1 hypothetical protein YP_001669065.1 3177411 D 76869 CDS YP_001669066.1 167033835 5870622 3177596..3179182 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3176 ABC transporte, ATP binding protein; ABC transporter-like protein 3179182 5870622 PputGB1_2836 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669066.1 3177596 D 76869 CDS YP_001669067.1 167033836 5870623 3179379..3180572 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2927 transporter; major facilitator superfamily transporter 3180572 5870623 PputGB1_2837 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669067.1 3179379 D 76869 CDS YP_001669068.1 167033837 5870624 complement(3180534..3181580) 1 NC_010322.1 KEGG: pen:PSEEN2928 hypothetical protein; hypothetical protein 3181580 5870624 PputGB1_2838 Pseudomonas putida GB-1 hypothetical protein YP_001669068.1 3180534 R 76869 CDS YP_001669069.1 167033838 5870625 3181780..3182619 1 NC_010322.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3182619 5870625 PputGB1_2839 Pseudomonas putida GB-1 putative glutathione S-transferase YghU YP_001669069.1 3181780 D 76869 CDS YP_001669070.1 167033839 5870626 3182760..3184463 1 NC_010322.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3184463 5870626 PputGB1_2840 Pseudomonas putida GB-1 amidase YP_001669070.1 3182760 D 76869 CDS YP_001669071.1 167033840 5870627 3184648..3185322 1 NC_010322.1 PFAM: YheO domain protein; KEGG: pen:PSEEN2009 hypothetical protein; YheO domain-containing protein 3185322 5870627 PputGB1_2841 Pseudomonas putida GB-1 YheO domain-containing protein YP_001669071.1 3184648 D 76869 CDS YP_001669072.1 167033841 5870628 3185319..3186236 1 NC_010322.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN2008 L-serine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 3186236 5870628 PputGB1_2842 Pseudomonas putida GB-1 pyridoxal-5'-phosphate-dependent protein subunit beta YP_001669072.1 3185319 D 76869 CDS YP_001669073.1 167033842 5870629 3186422..3187519 1 NC_010322.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN2366 carboxynorspermidine decarboxylase NspC; carboxynorspermidine decarboxylase 3187519 5870629 PputGB1_2843 Pseudomonas putida GB-1 carboxynorspermidine decarboxylase YP_001669073.1 3186422 D 76869 CDS YP_001669074.1 167033843 5870630 3187598..3188797 1 NC_010322.1 PFAM: Saccharopine dehydrogenase; KEGG: pen:PSEEN2365 hypothetical protein; saccharopine dehydrogenase 3188797 5870630 PputGB1_2844 Pseudomonas putida GB-1 saccharopine dehydrogenase YP_001669074.1 3187598 D 76869 CDS YP_001669075.1 167033844 5870631 complement(3188855..3189901) 1 NC_010322.1 PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2364 hypothetical protein; type 11 methyltransferase 3189901 5870631 PputGB1_2845 Pseudomonas putida GB-1 type 11 methyltransferase YP_001669075.1 3188855 R 76869 CDS YP_001669076.1 167033845 5870632 3190146..3191483 1 NC_010322.1 KEGG: pen:PSEEN3359 UDP-glucose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3191483 5870632 PputGB1_2846 Pseudomonas putida GB-1 nucleotide sugar dehydrogenase YP_001669076.1 3190146 D 76869 CDS YP_001669077.1 167033846 5870633 3191471..3192445 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN3360 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase 3192445 5870633 PputGB1_2847 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001669077.1 3191471 D 76869 CDS YP_001669078.1 167033847 5870634 3192480..3193223 1 NC_010322.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN3361 glycosyl transferase, group 2 family; glycosyl transferase family protein 3193223 5870634 PputGB1_2848 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001669078.1 3192480 D 76869 CDS YP_001669079.1 167033848 5870635 3193220..3193492 1 NC_010322.1 PFAM: lipid A biosynthesis domain protein; KEGG: pen:PSEEN3362 hypothetical protein; lipid A biosynthesis domain-containing protein 3193492 5870635 PputGB1_2849 Pseudomonas putida GB-1 lipid A biosynthesis domain-containing protein YP_001669079.1 3193220 D 76869 CDS YP_001669080.1 167033849 5870636 3193497..3195023 1 NC_010322.1 PFAM: glycosyl transferase family 39; KEGG: pen:PSEEN3363 hypothetical protein; glycosyl transferase family protein 3195023 5870636 PputGB1_2850 Pseudomonas putida GB-1 glycosyl transferase family protein YP_001669080.1 3193497 D 76869 CDS YP_001669081.1 167033850 5870637 complement(3195004..3196569) 1 NC_010322.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 3196569 5870637 PputGB1_2851 Pseudomonas putida GB-1 malate:quinone oxidoreductase YP_001669081.1 3195004 R 76869 CDS YP_001669082.1 167033851 5870638 3196715..3197935 1 NC_010322.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2356 hypothetical protein; radical SAM domain-containing protein 3197935 5870638 PputGB1_2852 Pseudomonas putida GB-1 radical SAM domain-containing protein YP_001669082.1 3196715 D 76869 CDS YP_001669083.1 167033852 5870639 3197926..3198774 1 NC_010322.1 KEGG: pen:PSEEN2355 hypothetical protein; hypothetical protein 3198774 5870639 PputGB1_2853 Pseudomonas putida GB-1 hypothetical protein YP_001669083.1 3197926 D 76869 CDS YP_001669084.1 167033853 5870640 complement(3198865..3199122) 1 NC_010322.1 KEGG: bxe:Bxe_A3019 hypothetical protein; hypothetical protein 3199122 5870640 PputGB1_2854 Pseudomonas putida GB-1 hypothetical protein YP_001669084.1 3198865 R 76869 CDS YP_001669085.1 167033854 5870641 complement(3199119..3199937) 1 NC_010322.1 KEGG: ypi:YpsIP31758_2493 hypothetical protein; hypothetical protein 3199937 5870641 PputGB1_2855 Pseudomonas putida GB-1 hypothetical protein YP_001669085.1 3199119 R 76869 CDS YP_001669086.1 167033855 5870642 complement(3199930..3203148) 1 NC_010322.1 KEGG: ypi:YpsIP31758_2494 hypothetical protein; hypothetical protein 3203148 5870642 PputGB1_2856 Pseudomonas putida GB-1 hypothetical protein YP_001669086.1 3199930 R 76869 CDS YP_001669087.1 167033856 5870643 complement(3203145..3204071) 1 NC_010322.1 hypothetical protein 3204071 5870643 PputGB1_2857 Pseudomonas putida GB-1 hypothetical protein YP_001669087.1 3203145 R 76869 CDS YP_001669088.1 167033857 5870644 complement(3204068..3206146) 1 NC_010322.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0262 hypothetical protein; ImpA family type VI secretion-associated protein 3206146 5870644 PputGB1_2858 Pseudomonas putida GB-1 ImpA family type VI secretion-associated protein YP_001669088.1 3204068 R 76869 CDS YP_001669089.1 167033858 5870645 complement(3206160..3207032) 1 NC_010322.1 KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein 3207032 5870645 PputGB1_2859 Pseudomonas putida GB-1 hypothetical protein YP_001669089.1 3206160 R 76869 CDS YP_001669090.1 167033859 5870646 complement(3207217..3208188) 1 NC_010322.1 KEGG: psp:PSPPH_2447 UreA amidolyase-related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 3208188 5870646 PputGB1_2860 Pseudomonas putida GB-1 urea amidolyase-like protein YP_001669090.1 3207217 R 76869 CDS YP_001669091.1 167033860 5870647 complement(3208185..3209072) 1 NC_010322.1 PFAM: Allophanate hydrolase subunit 1; KEGG: pfl:PFL_4548 allophanate hydrolase subunit 1 family; allophanate hydrolase subunit 1 3209072 5870647 PputGB1_2861 Pseudomonas putida GB-1 allophanate hydrolase subunit 1 YP_001669091.1 3208185 R 76869 CDS YP_001669092.1 167033861 5870648 complement(3209165..3209923) 1 NC_010322.1 PFAM: LamB/YcsF family protein; KEGG: pfl:PFL_4551 hypothetical protein; hypothetical protein 3209923 5870648 PputGB1_2862 Pseudomonas putida GB-1 hypothetical protein YP_001669092.1 3209165 R 76869 CDS YP_001669093.1 167033862 5870649 3210044..3210961 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_2444 transcriptional regulator, LysR family; LysR family transcriptional regulator 3210961 5870649 PputGB1_2863 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669093.1 3210044 D 76869 CDS YP_001669094.1 167033863 5870650 3211049..3213115 1 NC_010322.1 TIGRFAM: trehalose synthase; KEGG: psa:PST_0034 trehalose synthase; trehalose synthase 3213115 5870650 PputGB1_2864 Pseudomonas putida GB-1 trehalose synthase YP_001669094.1 3211049 D 76869 CDS YP_001669095.1 167033864 5870651 3213205..3216189 1 NC_010322.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pfo:Pfl_5637 outer membrane autotransporter barrel; outer membrane autotransporter 3216189 5870651 PputGB1_2865 Pseudomonas putida GB-1 outer membrane autotransporter YP_001669095.1 3213205 D 76869 CDS YP_001669096.1 167033865 5870652 3216464..3218602 1 NC_010322.1 KEGG: rpb:RPB_3423 hypothetical protein; hypothetical protein 3218602 5870652 PputGB1_2866 Pseudomonas putida GB-1 hypothetical protein YP_001669096.1 3216464 D 76869 CDS YP_001669097.1 167033866 5870653 3218737..3219366 1 NC_010322.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3219366 5870653 PputGB1_2867 Pseudomonas putida GB-1 riboflavin synthase subunit alpha YP_001669097.1 3218737 D 76869 CDS YP_001669098.1 167033867 5870654 3219376..3220077 1 NC_010322.1 PFAM: protein of unknown function DUF1275; KEGG: pen:PSEEN2178 hypothetical protein; hypothetical protein 3220077 5870654 PputGB1_2868 Pseudomonas putida GB-1 hypothetical protein YP_001669098.1 3219376 D 76869 CDS YP_001669099.1 167033868 5870655 complement(3220078..3221580) 1 NC_010322.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: stm:STM4290 proline/glycine betaine transporter; proline/glycine betaine transporter 3221580 5870655 PputGB1_2869 Pseudomonas putida GB-1 proline/glycine betaine transporter YP_001669099.1 3220078 R 76869 CDS YP_001669100.1 167033869 5870656 complement(3221721..3222695) 1 NC_010322.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 3222695 5870656 PputGB1_2870 Pseudomonas putida GB-1 delta-aminolevulinic acid dehydratase YP_001669100.1 3221721 R 76869 CDS YP_001669101.1 167033870 5870657 complement(3222869..3223762) 1 NC_010322.1 PFAM: protein of unknown function RIO1; KEGG: pst:PSPTO_0748 hypothetical protein; hypothetical protein 3223762 5870657 PputGB1_2871 Pseudomonas putida GB-1 hypothetical protein YP_001669101.1 3222869 R 76869 CDS YP_001669102.1 167033871 5870658 complement(3223850..3225241) 1 NC_010322.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: psp:PSPPH_4937 GabA permease; GABA permease 3225241 5870658 PputGB1_2872 Pseudomonas putida GB-1 GABA permease YP_001669102.1 3223850 R 76869 CDS YP_001669103.1 167033872 5870659 complement(3225392..3226642) 1 NC_010322.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 3226642 5870659 PputGB1_2873 Pseudomonas putida GB-1 hydroxyglutarate oxidase YP_001669103.1 3225392 R 76869 CDS YP_001669104.1 167033873 5870660 complement(3226757..3227734) 1 NC_010322.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3227734 5870660 PputGB1_2874 Pseudomonas putida GB-1 hypothetical protein YP_001669104.1 3226757 R 76869 CDS YP_001669105.1 167033874 5870661 3227931..3228626 1 NC_010322.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3228626 5870661 PputGB1_2875 Pseudomonas putida GB-1 DNA-binding transcriptional regulator CsiR YP_001669105.1 3227931 D 76869 CDS YP_001669106.1 167033875 5870662 3228701..3229381 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2089 DNA-binding response regulator; two component transcriptional regulator 3229381 5870662 PputGB1_2876 Pseudomonas putida GB-1 two component transcriptional regulator YP_001669106.1 3228701 D 76869 CDS YP_001669107.1 167033876 5870663 3229359..3230750 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2088 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3230750 5870663 PputGB1_2877 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001669107.1 3229359 D 76869 CDS YP_001669108.1 167033877 5870664 complement(3230784..3232166) 1 NC_010322.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3232166 cysS 5870664 cysS Pseudomonas putida GB-1 cysteinyl-tRNA synthetase YP_001669108.1 3230784 R 76869 CDS YP_001669109.1 167033878 5870665 complement(3232176..3233879) 1 NC_010322.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3233879 5870665 PputGB1_2879 Pseudomonas putida GB-1 glutaminyl-tRNA synthetase YP_001669109.1 3232176 R 76869 CDS YP_001669110.1 167033879 5870666 3234128..3234628 1 NC_010322.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN2085 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); cyclophilin type peptidyl-prolyl cis-trans isomerase 3234628 5870666 PputGB1_2880 Pseudomonas putida GB-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001669110.1 3234128 D 76869 CDS YP_001669111.1 167033880 5870667 3234625..3235347 1 NC_010322.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3235347 5870667 PputGB1_2881 Pseudomonas putida GB-1 UDP-2,3-diacylglucosamine hydrolase YP_001669111.1 3234625 D 76869 CDS YP_001669112.1 167033881 5870668 complement(3235414..3237723) 1 NC_010322.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN2083 penicillin amidase; peptidase S45 penicillin amidase 3237723 5870668 PputGB1_2882 Pseudomonas putida GB-1 peptidase S45 penicillin amidase YP_001669112.1 3235414 R 76869 CDS YP_001669113.1 167033882 5870669 3237919..3238293 1 NC_010322.1 KEGG: pen:PSEEN2082 hypothetical protein; hypothetical protein 3238293 5870669 PputGB1_2883 Pseudomonas putida GB-1 hypothetical protein YP_001669113.1 3237919 D 76869 CDS YP_001669114.1 167033883 5870670 complement(3238330..3238518) 1 NC_010322.1 KEGG: pen:PSEEN2081 hypothetical protein; hypothetical protein 3238518 5870670 PputGB1_2884 Pseudomonas putida GB-1 hypothetical protein YP_001669114.1 3238330 R 76869 CDS YP_001669115.1 167033884 5870671 3238670..3239128 1 NC_010322.1 KEGG: pfl:PFL_0784 hypothetical protein; hypothetical protein 3239128 5870671 PputGB1_2885 Pseudomonas putida GB-1 hypothetical protein YP_001669115.1 3238670 D 76869 CDS YP_001669116.1 167033885 5870672 3239378..3239758 1 NC_010322.1 KEGG: pen:PSEEN2080 hypothetical protein; hypothetical protein 3239758 5870672 PputGB1_2886 Pseudomonas putida GB-1 hypothetical protein YP_001669116.1 3239378 D 76869 CDS YP_001669117.1 167033886 5870673 3239823..3240467 1 NC_010322.1 KEGG: pfl:PFL_0781 hypothetical protein; hypothetical protein 3240467 5870673 PputGB1_2887 Pseudomonas putida GB-1 hypothetical protein YP_001669117.1 3239823 D 76869 CDS YP_001669118.1 167033887 5870674 3240542..3241096 1 NC_010322.1 KEGG: pfl:PFL_0780 hypothetical protein; hypothetical protein 3241096 5870674 PputGB1_2888 Pseudomonas putida GB-1 hypothetical protein YP_001669118.1 3240542 D 76869 CDS YP_001669119.1 167033888 5870675 complement(3241116..3244790) 1 NC_010322.1 PFAM: protein of unknown function DUF490; KEGG: pen:PSEEN2079 hypothetical protein; hypothetical protein 3244790 5870675 PputGB1_2889 Pseudomonas putida GB-1 hypothetical protein YP_001669119.1 3241116 R 76869 CDS YP_001669120.1 167033889 5870676 complement(3244787..3246529) 1 NC_010322.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN2078 surface antigen; surface antigen (D15) 3246529 5870676 PputGB1_2890 Pseudomonas putida GB-1 surface antigen (D15) YP_001669120.1 3244787 R 76869 CDS YP_001669121.1 167033890 5870677 complement(3246582..3247232) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2077 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3247232 5870677 PputGB1_2891 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669121.1 3246582 R 76869 CDS YP_001669122.1 167033891 5870678 3247395..3248207 1 NC_010322.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3248207 5870678 PputGB1_2892 Pseudomonas putida GB-1 exonuclease III YP_001669122.1 3247395 D 76869 CDS YP_001669123.1 167033892 5870679 complement(3248247..3248999) 1 NC_010322.1 KEGG: pen:PSEEN2072 transmembrane regulator PrtR; putative transmembrane anti-sigma factor 3248999 5870679 PputGB1_2893 Pseudomonas putida GB-1 putative transmembrane anti-sigma factor YP_001669123.1 3248247 R 76869 CDS YP_001669124.1 167033893 5870680 complement(3248996..3249517) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2071 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor 3249517 5870680 PputGB1_2894 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669124.1 3248996 R 76869 CDS YP_001669125.1 167033894 5870681 3249642..3250694 1 NC_010322.1 PFAM: Catalase domain protein; KEGG: pen:PSEEN2069 catalase; catalase domain-containing protein 3250694 5870681 PputGB1_2895 Pseudomonas putida GB-1 catalase domain-containing protein YP_001669125.1 3249642 D 76869 CDS YP_001669126.1 167033895 5870682 3250691..3251224 1 NC_010322.1 PFAM: cytochrome B561; KEGG: pen:PSEEN2068 cytochrome b561; cytochrome B561 3251224 5870682 PputGB1_2896 Pseudomonas putida GB-1 cytochrome B561 YP_001669126.1 3250691 D 76869 CDS YP_001669127.1 167033896 5870683 3251311..3252516 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2067 transporter, MFS family; major facilitator superfamily transporter 3252516 5870683 PputGB1_2897 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669127.1 3251311 D 76869 CDS YP_001669128.1 167033897 5870684 3252598..3253143 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2066 transcriptional regulator; XRE family transcriptional regulator 3253143 5870684 PputGB1_2898 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669128.1 3252598 D 76869 CDS YP_001669129.1 167033898 5870685 3253146..3253445 1 NC_010322.1 KEGG: pen:PSEEN2065 hypothetical protein; hypothetical protein 3253445 5870685 PputGB1_2899 Pseudomonas putida GB-1 hypothetical protein YP_001669129.1 3253146 D 76869 CDS YP_001669130.1 167033899 5870686 complement(3253418..3254032) 1 NC_010322.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN2064 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 3254032 5870686 PputGB1_2900 Pseudomonas putida GB-1 DSBA oxidoreductase YP_001669130.1 3253418 R 76869 CDS YP_001669131.1 167033900 5870687 complement(3254062..3254793) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2063 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3254793 5870687 PputGB1_2901 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001669131.1 3254062 R 76869 CDS YP_001669132.1 167033901 5870688 3254883..3255446 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2062 transcriptional regulator, TetR family; TetR family transcriptional regulator 3255446 5870688 PputGB1_2902 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669132.1 3254883 D 76869 CDS YP_001669133.1 167033902 5870689 3255433..3256026 1 NC_010322.1 KEGG: pen:PSEEN2061 hypothetical protein; hypothetical protein 3256026 5870689 PputGB1_2903 Pseudomonas putida GB-1 hypothetical protein YP_001669133.1 3255433 D 76869 CDS YP_001669134.1 167033903 5870690 complement(3256073..3257077) 1 NC_010322.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3017 hypothetical protein; bile acid:sodium symporter 3257077 5870690 PputGB1_2904 Pseudomonas putida GB-1 bile acid:sodium symporter YP_001669134.1 3256073 R 76869 CDS YP_001669135.1 167033904 5870691 3257184..3258326 1 NC_010322.1 PFAM: beta-lactamase; KEGG: pen:PSEEN3018 beta-lactamase class C; beta-lactamase 3258326 ampC 5870691 ampC Pseudomonas putida GB-1 beta-lactamase YP_001669135.1 3257184 D 76869 CDS YP_001669136.1 167033905 5870692 3258628..3258960 1 NC_010322.1 KEGG: pen:PSEEN3020 hypothetical protein; hypothetical protein 3258960 5870692 PputGB1_2906 Pseudomonas putida GB-1 hypothetical protein YP_001669136.1 3258628 D 76869 CDS YP_001669137.1 167033906 5870693 complement(3259007..3259318) 1 NC_010322.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 3259318 5870693 PputGB1_2907 Pseudomonas putida GB-1 hypothetical protein YP_001669137.1 3259007 R 76869 CDS YP_001669138.1 167033907 5870694 complement(3259459..3259647) 1 NC_010322.1 KEGG: pen:PSEEN3023 hypothetical protein; hypothetical protein 3259647 5870694 PputGB1_2908 Pseudomonas putida GB-1 hypothetical protein YP_001669138.1 3259459 R 76869 CDS YP_001669139.1 167033908 5870695 complement(3259786..3260106) 1 NC_010322.1 PFAM: protein of unknown function DUF74; KEGG: pen:PSEEN3024 hypothetical protein; hypothetical protein 3260106 5870695 PputGB1_2909 Pseudomonas putida GB-1 hypothetical protein YP_001669139.1 3259786 R 76869 CDS YP_001669140.1 167033909 5870696 complement(3260177..3261061) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3025 hypothetical protein; hypothetical protein 3261061 5870696 PputGB1_2910 Pseudomonas putida GB-1 hypothetical protein YP_001669140.1 3260177 R 76869 CDS YP_001669141.1 167033910 5870697 complement(3261302..3262345) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pfl:PFL_2704 extracellular solute-binding protein, PotD/PotF family; extracellular solute-binding protein 3262345 5870697 PputGB1_2911 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669141.1 3261302 R 76869 CDS YP_001669142.1 167033911 5870698 3262523..3264475 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pfl:PFL_2703 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 3264475 5870698 PputGB1_2912 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001669142.1 3262523 D 76869 CDS YP_001669143.1 167033912 5870699 3264515..3265114 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pau:PA14_65950 putative transcriptional regulator; XRE family transcriptional regulator 3265114 5870699 PputGB1_2913 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669143.1 3264515 D 76869 CDS YP_001669144.1 167033913 5870700 3265195..3266397 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:Pfl_2451 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3266397 5870700 PputGB1_2914 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001669144.1 3265195 D 76869 CDS YP_001669145.1 167033914 5870701 complement(3266460..3267071) 1 NC_010322.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 3267071 5870701 PputGB1_2915 Pseudomonas putida GB-1 azoreductase YP_001669145.1 3266460 R 76869 CDS YP_001669146.1 167033915 5870702 3267205..3268107 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2930 transcriptional regulator, LysR family; LysR family transcriptional regulator 3268107 5870702 PputGB1_2916 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669146.1 3267205 D 76869 CDS YP_001669147.1 167033916 5870703 3268100..3268459 1 NC_010322.1 PFAM: protein of unknown function DUF419; KEGG: pen:PSEEN2931 hypothetical protein; hypothetical protein 3268459 5870703 PputGB1_2917 Pseudomonas putida GB-1 hypothetical protein YP_001669147.1 3268100 D 76869 CDS YP_001669148.1 167033917 5870704 complement(3268498..3268911) 1 NC_010322.1 PFAM: protein of unknown function DUF1294; KEGG: pen:PSEEN2932 hypothetical protein; hypothetical protein 3268911 5870704 PputGB1_2918 Pseudomonas putida GB-1 hypothetical protein YP_001669148.1 3268498 R 76869 CDS YP_001669149.1 167033918 5870705 complement(3268904..3269734) 1 NC_010322.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3269734 5870705 PputGB1_2919 Pseudomonas putida GB-1 undecaprenyl pyrophosphate phosphatase YP_001669149.1 3268904 R 76869 CDS YP_001669150.1 167033919 5870706 3270034..3271668 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: pen:PSEEN2935 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3271668 5870706 PputGB1_2920 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001669150.1 3270034 D 76869 CDS YP_001669151.1 167033920 5870707 3271863..3272429 1 NC_010322.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pen:PSEEN2937 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3272429 5870707 PputGB1_2921 Pseudomonas putida GB-1 nicotinamide mononucleotide transporter PnuC YP_001669151.1 3271863 D 76869 CDS YP_001669152.1 167033921 5870708 3272426..3272995 1 NC_010322.1 KEGG: pen:PSEEN2938 hypothetical protein; hypothetical protein 3272995 5870708 PputGB1_2922 Pseudomonas putida GB-1 hypothetical protein YP_001669152.1 3272426 D 76869 CDS YP_001669153.1 167033922 5870709 3273293..3273733 1 NC_010322.1 KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 3273733 5870709 PputGB1_2923 Pseudomonas putida GB-1 hypothetical protein YP_001669153.1 3273293 D 76869 CDS YP_001669154.1 167033923 5870710 3273735..3274313 1 NC_010322.1 KEGG: pen:PSEEN2940 hypothetical protein; hypothetical protein 3274313 5870710 PputGB1_2924 Pseudomonas putida GB-1 hypothetical protein YP_001669154.1 3273735 D 76869 CDS YP_001669155.1 167033924 5870711 3274363..3275814 1 NC_010322.1 KEGG: pen:PSEEN2941 hypothetical protein; hypothetical protein 3275814 5870711 PputGB1_2925 Pseudomonas putida GB-1 hypothetical protein YP_001669155.1 3274363 D 76869 CDS YP_001669156.1 167033925 5870712 3275877..3276557 1 NC_010322.1 PFAM: peptidase C39 bacteriocin processing; KEGG: pen:PSEEN2942 hypothetical protein; peptidase C39 bacteriocin processing 3276557 5870712 PputGB1_2926 Pseudomonas putida GB-1 peptidase C39 bacteriocin processing YP_001669156.1 3275877 D 76869 CDS YP_001669157.1 167033926 5870713 3276603..3277355 1 NC_010322.1 KEGG: pen:PSEEN2943 hypothetical protein; hypothetical protein 3277355 5870713 PputGB1_2927 Pseudomonas putida GB-1 hypothetical protein YP_001669157.1 3276603 D 76869 CDS YP_001669158.1 167033927 5870714 3277402..3278682 1 NC_010322.1 KEGG: pen:PSEEN2944 hypothetical protein; hypothetical protein 3278682 5870714 PputGB1_2928 Pseudomonas putida GB-1 hypothetical protein YP_001669158.1 3277402 D 76869 CDS YP_001669159.1 167033928 5870715 3278819..3281020 1 NC_010322.1 PFAM: sulfatase; KEGG: pen:PSEEN2945 sulfatase; sulfatase 3281020 5870715 PputGB1_2929 Pseudomonas putida GB-1 sulfatase YP_001669159.1 3278819 D 76869 CDS YP_001669160.1 167033929 5870716 3281115..3281843 1 NC_010322.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pen:PSEEN3016 hypothetical protein; hypothetical protein 3281843 5870716 PputGB1_2930 Pseudomonas putida GB-1 hypothetical protein YP_001669160.1 3281115 D 76869 CDS YP_001669161.1 167033930 5870717 complement(3281862..3282485) 1 NC_010322.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: pen:PSEEN2100 urease accessory protein UreG; urease accessory protein UreG 3282485 5870717 PputGB1_2931 Pseudomonas putida GB-1 urease accessory protein UreG YP_001669161.1 3281862 R 76869 CDS YP_001669162.1 167033931 5870718 complement(3282497..3283171) 1 NC_010322.1 PFAM: Urease accessory protein UreF; KEGG: pen:PSEEN2099 urease accessory protein UreF; urease accessory protein UreF 3283171 5870718 PputGB1_2932 Pseudomonas putida GB-1 urease accessory protein UreF YP_001669162.1 3282497 R 76869 CDS YP_001669163.1 167033932 5870719 complement(3283171..3283716) 1 NC_010322.1 PFAM: HupE/UreJ protein; KEGG: pen:PSEEN2098 urease accessory protein UreJ; HupE/UreJ protein 3283716 5870719 PputGB1_2933 Pseudomonas putida GB-1 HupE/UreJ protein YP_001669163.1 3283171 R 76869 CDS YP_001669164.1 167033933 5870720 complement(3283735..3284232) 1 NC_010322.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 3284232 ureE 5870720 ureE Pseudomonas putida GB-1 urease accessory protein UreE YP_001669164.1 3283735 R 76869 CDS YP_001669165.1 167033934 5870721 complement(3284243..3285946) 1 NC_010322.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3285946 ureC 5870721 ureC Pseudomonas putida GB-1 urease subunit alpha YP_001669165.1 3284243 R 76869 CDS YP_001669166.1 167033935 5870722 complement(3285943..3286260) 1 NC_010322.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 3286260 ureB 5870722 ureB Pseudomonas putida GB-1 urease subunit beta YP_001669166.1 3285943 R 76869 CDS YP_001669167.1 167033936 5870723 complement(3286280..3286582) 1 NC_010322.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 3286582 ureA 5870723 ureA Pseudomonas putida GB-1 urease subunit gamma YP_001669167.1 3286280 R 76869 CDS YP_001669168.1 167033937 5870724 complement(3286592..3287425) 1 NC_010322.1 PFAM: Urease accessory protein UreD; KEGG: pen:PSEEN2093 urease accessory protein UreD; urease accessory protein UreD 3287425 5870724 PputGB1_2938 Pseudomonas putida GB-1 urease accessory protein UreD YP_001669168.1 3286592 R 76869 CDS YP_001669169.1 167033938 5870725 complement(3287699..3288613) 1 NC_010322.1 PFAM: integrase family protein; KEGG: pen:PSEEN2998 site-specific recombinase, phage integrase family; integrase family protein 3288613 5870725 PputGB1_2939 Pseudomonas putida GB-1 integrase family protein YP_001669169.1 3287699 R 76869 CDS YP_001669170.1 167033939 5870726 3288828..3290009 1 NC_010322.1 PFAM: NnrS family protein; KEGG: pen:PSEEN3000 NnrS protein; NnrS family protein 3290009 5870726 PputGB1_2940 Pseudomonas putida GB-1 NnrS family protein YP_001669170.1 3288828 D 76869 CDS YP_001669171.1 167033940 5870728 complement(3291207..3293468) 1 NC_010322.1 PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: pen:PSEEN2644 hypothetical protein; DEAD/DEAH box helicase 3293468 5870728 PputGB1_2943 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001669171.1 3291207 R 76869 CDS YP_001669172.1 167033941 5870729 complement(3293465..3295114) 1 NC_010322.1 PFAM: VRR-NUC domain protein; KEGG: pen:PSEEN2643 hypothetical protein; VRR-NUC domain-containing protein 3295114 5870729 PputGB1_2944 Pseudomonas putida GB-1 VRR-NUC domain-containing protein YP_001669172.1 3293465 R 76869 CDS YP_001669173.1 167033942 5870730 complement(3295343..3296653) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: ecw:EcE24377A_4501 phthalate permease family protein; major facilitator superfamily transporter 3296653 5870730 PputGB1_2945 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669173.1 3295343 R 76869 CDS YP_001669174.1 167033943 5870731 complement(3296744..3297961) 1 NC_010322.1 KEGG: bja:blr3199 hypothetical protein; hypothetical protein 3297961 5870731 PputGB1_2946 Pseudomonas putida GB-1 hypothetical protein YP_001669174.1 3296744 R 76869 CDS YP_001669175.1 167033944 5870732 complement(3297982..3299040) 1 NC_010322.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: csa:Csal_1752 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase 3299040 5870732 PputGB1_2947 Pseudomonas putida GB-1 malate/L-lactate dehydrogenase YP_001669175.1 3297982 R 76869 CDS YP_001669176.1 167033945 5870733 complement(3299076..3300617) 1 NC_010322.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_B0321 altronate dehydratase; galactarate dehydratase 3300617 5870733 PputGB1_2948 Pseudomonas putida GB-1 galactarate dehydratase YP_001669176.1 3299076 R 76869 CDS YP_001669177.1 167033946 5870734 complement(3300803..3301756) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_0863 transcriptional regulator, LysR family; LysR family transcriptional regulator 3301756 5870734 PputGB1_2949 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669177.1 3300803 R 76869 CDS YP_001669178.1 167033947 5870735 complement(3301784..3302731) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3514 transcriptional regulator, LysR family; LysR family transcriptional regulator 3302731 5870735 PputGB1_2950 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669178.1 3301784 R 76869 CDS YP_001669179.1 167033948 5870736 3302833..3304146 1 NC_010322.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_3515 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3304146 5870736 PputGB1_2951 Pseudomonas putida GB-1 mandelate racemase/muconate lactonizing protein YP_001669179.1 3302833 D 76869 CDS YP_001669180.1 167033949 5870737 3304213..3305514 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4257 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3305514 5870737 PputGB1_2952 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669180.1 3304213 D 76869 CDS YP_001669181.1 167033950 5870738 complement(3305626..3306978) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; GntR family transcriptional regulator 3306978 5870738 PputGB1_2953 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001669181.1 3305626 R 76869 CDS YP_001669182.1 167033951 5870739 complement(3306978..3308363) 1 NC_010322.1 KEGG: pen:PSEEN2632 hypothetical protein; hypothetical protein 3308363 5870739 PputGB1_2954 Pseudomonas putida GB-1 hypothetical protein YP_001669182.1 3306978 R 76869 CDS YP_001669183.1 167033952 5870740 complement(3308884..3309906) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN2630 quinone oxidoreductase; alcohol dehydrogenase 3309906 5870740 PputGB1_2955 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669183.1 3308884 R 76869 CDS YP_001669184.1 167033953 5870741 3310113..3311027 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2629 transcriptional regulator, LysR family; LysR family transcriptional regulator 3311027 5870741 PputGB1_2956 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669184.1 3310113 D 76869 CDS YP_001669185.1 167033954 5870742 3311138..3312448 1 NC_010322.1 PFAM: integrase family protein; KEGG: mpt:Mpe_A1087 prophage CP4-like integrase; integrase family protein 3312448 5870742 PputGB1_2957 Pseudomonas putida GB-1 integrase family protein YP_001669185.1 3311138 D 76869 CDS YP_001669186.1 167033955 5870743 3312850..3313308 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mmw:Mmwyl1_1781 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3313308 5870743 PputGB1_2958 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669186.1 3312850 D 76869 CDS YP_001669187.1 167033956 5870744 complement(3313441..3313647) 1 NC_010322.1 hypothetical protein 3313647 5870744 PputGB1_2959 Pseudomonas putida GB-1 hypothetical protein YP_001669187.1 3313441 R 76869 CDS YP_001669188.1 167033957 5870745 complement(3313647..3313889) 1 NC_010322.1 hypothetical protein 3313889 5870745 PputGB1_2960 Pseudomonas putida GB-1 hypothetical protein YP_001669188.1 3313647 R 76869 CDS YP_001669189.1 167033958 5870746 3314582..3315019 1 NC_010322.1 KEGG: pen:PSEEN3029 chromate transporter; hypothetical protein 3315019 5870746 PputGB1_2961 Pseudomonas putida GB-1 hypothetical protein YP_001669189.1 3314582 D 76869 CDS YP_001669190.1 167033959 5870747 3315024..3317567 1 NC_010322.1 KEGG: pen:PSEEN1307 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3317567 5870747 PputGB1_2962 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001669190.1 3315024 D 76869 CDS YP_001669191.1 167033960 5870748 3317697..3318047 1 NC_010322.1 KEGG: cgr:CAGL0J01771g unnamed protein product; hypothetical protein 3318047 5870748 PputGB1_2963 Pseudomonas putida GB-1 hypothetical protein YP_001669191.1 3317697 D 76869 CDS YP_001669192.1 167033961 5870749 3318138..3318518 1 NC_010322.1 KEGG: pfo:Pfl_4134 hypothetical protein; hypothetical protein 3318518 5870749 PputGB1_2964 Pseudomonas putida GB-1 hypothetical protein YP_001669192.1 3318138 D 76869 CDS YP_001669193.1 167033962 5870750 complement(3318561..3319085) 1 NC_010322.1 KEGG: mxa:MXAN_2374 hypothetical protein; hypothetical protein 3319085 5870750 PputGB1_2965 Pseudomonas putida GB-1 hypothetical protein YP_001669193.1 3318561 R 76869 CDS YP_001669194.1 167033963 5870751 3319232..3321019 1 NC_010322.1 catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 3321019 5870751 PputGB1_2966 Pseudomonas putida GB-1 thiamine pyrophosphate protein YP_001669194.1 3319232 D 76869 CDS YP_001669195.1 167033964 5870752 complement(3321141..3321866) 1 NC_010322.1 PFAM: protein of unknown function DUF72; KEGG: psb:Psyr_2383 protein of unknown function DUF72; hypothetical protein 3321866 5870752 PputGB1_2967 Pseudomonas putida GB-1 hypothetical protein YP_001669195.1 3321141 R 76869 CDS YP_001669196.1 167033965 5870753 3323054..3323278 1 NC_010322.1 hypothetical protein 3323278 5870753 PputGB1_2968 Pseudomonas putida GB-1 hypothetical protein YP_001669196.1 3323054 D 76869 CDS YP_001669197.1 167033966 5870754 complement(3323322..3323510) 1 NC_010322.1 hypothetical protein 3323510 5870754 PputGB1_2969 Pseudomonas putida GB-1 hypothetical protein YP_001669197.1 3323322 R 76869 CDS YP_001669198.1 167033967 5870755 3324075..3324281 1 NC_010322.1 PFAM: regulatory protein LysR; helix-turn-helix Fis-type; KEGG: azc:AZC_0246 transcriptional regulator; LysR family transcriptional regulator 3324281 5870755 PputGB1_2970 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669198.1 3324075 D 76869 CDS YP_001669199.1 167033968 5870756 complement(3324278..3325159) 1 NC_010322.1 PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 3325159 5870756 PputGB1_2971 Pseudomonas putida GB-1 integrase catalytic subunit YP_001669199.1 3324278 R 76869 CDS YP_001669200.1 167033969 5870757 complement(3325150..3325428) 1 NC_010322.1 PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 3325428 5870757 PputGB1_2972 Pseudomonas putida GB-1 transposase IS3/IS911 family protein YP_001669200.1 3325150 R 76869 CDS YP_001669201.1 167033970 5870758 3325595..3325978 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_1960 transcriptional regulator, AraC family; AraC family transcriptional regulator 3325978 5870758 PputGB1_2973 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669201.1 3325595 D 76869 CDS YP_001669202.1 167033971 5870759 complement(3326046..3326318) 1 NC_010322.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pmy:Pmen_2589 hypothetical protein; peptidase 3326318 5870759 PputGB1_2974 Pseudomonas putida GB-1 peptidase YP_001669202.1 3326046 R 76869 CDS YP_001669203.1 167033972 5870760 complement(3326734..3326961) 1 NC_010322.1 hypothetical protein 3326961 5870760 PputGB1_2975 Pseudomonas putida GB-1 hypothetical protein YP_001669203.1 3326734 R 76869 CDS YP_001669204.1 167033973 5870761 complement(3327195..3327515) 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2430 NUDIX hydrolase; NUDIX hydrolase 3327515 5870761 PputGB1_2976 Pseudomonas putida GB-1 NUDIX hydrolase YP_001669204.1 3327195 R 76869 CDS YP_001669205.1 167033974 5870762 3327671..3328123 1 NC_010322.1 KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein 3328123 5870762 PputGB1_2977 Pseudomonas putida GB-1 hypothetical protein YP_001669205.1 3327671 D 76869 CDS YP_001669206.1 167033975 5870763 3328356..3329741 1 NC_010322.1 PFAM: methyltransferase small; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small 3329741 5870763 PputGB1_2978 Pseudomonas putida GB-1 methyltransferase small YP_001669206.1 3328356 D 76869 CDS YP_001669207.1 167033976 5870764 complement(3329835..3331043) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6467 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3331043 5870764 PputGB1_2979 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669207.1 3329835 R 76869 CDS YP_001669208.1 167033977 5870765 complement(3331093..3332121) 1 NC_010322.1 PFAM: dienelactone hydrolase; KEGG: rso:RSc0206 hypothetical signal peptide protein; dienelactone hydrolase 3332121 5870765 PputGB1_2980 Pseudomonas putida GB-1 dienelactone hydrolase YP_001669208.1 3331093 R 76869 CDS YP_001669209.1 167033978 5870766 3332327..3333292 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 3333292 5870766 PputGB1_2981 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669209.1 3332327 D 76869 CDS YP_001669210.1 167033979 5870767 complement(3333344..3333571) 1 NC_010322.1 hypothetical protein 3333571 5870767 PputGB1_2982 Pseudomonas putida GB-1 hypothetical protein YP_001669210.1 3333344 R 76869 CDS YP_001669211.1 167033980 5870768 complement(3333830..3334120) 1 NC_010322.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 3334120 5870768 PputGB1_2983 Pseudomonas putida GB-1 hypothetical protein YP_001669211.1 3333830 R 76869 CDS YP_001669212.1 167033981 5870769 3335255..3336457 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1875 glutathione-dependent formaldehyde dehydrogenase; alcohol dehydrogenase 3336457 5870769 PputGB1_2984 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669212.1 3335255 D 76869 CDS YP_001669213.1 167033982 5870770 3336471..3336704 1 NC_010322.1 KEGG: pmy:Pmen_2271 hypothetical protein; hypothetical protein 3336704 5870770 PputGB1_2985 Pseudomonas putida GB-1 hypothetical protein YP_001669213.1 3336471 D 76869 CDS YP_001669214.1 167033983 5870771 3336738..3338063 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_2360 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3338063 5870771 PputGB1_2986 Pseudomonas putida GB-1 short chain dehydrogenase YP_001669214.1 3336738 D 76869 CDS YP_001669215.1 167033984 5870772 3338143..3338685 1 NC_010322.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase 3338685 5870772 PputGB1_2987 Pseudomonas putida GB-1 PfpI family intracellular peptidase YP_001669215.1 3338143 D 76869 CDS YP_001669216.1 167033985 5870773 complement(3338758..3339900) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4750 sensor histidine kinase; histidine kinase 3339900 5870773 PputGB1_2988 Pseudomonas putida GB-1 histidine kinase YP_001669216.1 3338758 R 76869 CDS YP_001669217.1 167033986 5870774 3340086..3340448 1 NC_010322.1 PFAM: response regulator receiver; KEGG: rpc:RPC_1228 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3340448 5870774 PputGB1_2989 Pseudomonas putida GB-1 response regulator receiver protein YP_001669217.1 3340086 D 76869 CDS YP_001669218.1 167033987 5870775 complement(3340520..3340786) 1 NC_010322.1 KEGG: pfo:Pfl_2790 hypothetical protein; hypothetical protein 3340786 5870775 PputGB1_2990 Pseudomonas putida GB-1 hypothetical protein YP_001669218.1 3340520 R 76869 CDS YP_001669219.1 167033988 5870776 3340996..3341412 1 NC_010322.1 PFAM: response regulator receiver; KEGG: mex:Mext_3363 response regulator receiver; response regulator receiver protein 3341412 5870776 PputGB1_2991 Pseudomonas putida GB-1 response regulator receiver protein YP_001669219.1 3340996 D 76869 CDS YP_001669220.1 167033989 5870777 3341579..3342388 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_3182 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3342388 5870777 PputGB1_2992 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669220.1 3341579 D 76869 CDS YP_001669221.1 167033990 5870778 3342385..3343566 1 NC_010322.1 KEGG: psp:PSPPH_1479 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3343566 5870778 PputGB1_2993 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001669221.1 3342385 D 76869 CDS YP_001669222.1 167033991 5870779 3343688..3344134 1 NC_010322.1 PFAM: protein of unknown function DUF1452; KEGG: pen:PSEEN3078 hypothetical protein; hypothetical protein 3344134 5870779 PputGB1_2994 Pseudomonas putida GB-1 hypothetical protein YP_001669222.1 3343688 D 76869 CDS YP_001669223.1 167033992 5870780 complement(3344108..3344533) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pfl:PFL_4716 response regulator; response regulator receiver protein 3344533 5870780 PputGB1_2995 Pseudomonas putida GB-1 response regulator receiver protein YP_001669223.1 3344108 R 76869 CDS YP_001669224.1 167033993 5870781 complement(3344616..3345050) 1 NC_010322.1 KEGG: psb:Psyr_2382 conservedhypothetical protein; hypothetical protein 3345050 5870781 PputGB1_2996 Pseudomonas putida GB-1 hypothetical protein YP_001669224.1 3344616 R 76869 CDS YP_001669225.1 167033994 5870782 complement(3345047..3345355) 1 NC_010322.1 KEGG: psa:PST_0215 hypothetical protein; hypothetical protein 3345355 5870782 PputGB1_2997 Pseudomonas putida GB-1 hypothetical protein YP_001669225.1 3345047 R 76869 CDS YP_001669226.1 167033995 5870783 complement(3345492..3345797) 1 NC_010322.1 KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein 3345797 5870783 PputGB1_2998 Pseudomonas putida GB-1 hypothetical protein YP_001669226.1 3345492 R 76869 CDS YP_001669227.1 167033996 5870784 complement(3345881..3346936) 1 NC_010322.1 PFAM: peptidase M42 family protein; KEGG: pfl:PFL_4725 glutamyl aminopeptidase, M42 family; peptidase M42 family protein 3346936 5870784 PputGB1_2999 Pseudomonas putida GB-1 peptidase M42 family protein YP_001669227.1 3345881 R 76869 CDS YP_001669228.1 167033997 5870785 complement(3346969..3347493) 1 NC_010322.1 KEGG: pfo:Pfl_2692 hypothetical protein; hypothetical protein 3347493 5870785 PputGB1_3000 Pseudomonas putida GB-1 hypothetical protein YP_001669228.1 3346969 R 76869 CDS YP_001669229.1 167033998 5870786 3347690..3348547 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2411 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3348547 5870786 PputGB1_3001 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001669229.1 3347690 D 76869 CDS YP_001669230.1 167033999 5870787 complement(3348600..3348761) 1 NC_010322.1 hypothetical protein 3348761 5870787 PputGB1_3002 Pseudomonas putida GB-1 hypothetical protein YP_001669230.1 3348600 R 76869 CDS YP_001669231.1 167034000 5870788 3348915..3349418 1 NC_010322.1 PFAM: CinA domain protein; KEGG: pfo:Pfl_2789 CinA-like; CinA domain-containing protein 3349418 5870788 PputGB1_3003 Pseudomonas putida GB-1 CinA domain-containing protein YP_001669231.1 3348915 D 76869 CDS YP_001669232.1 167034001 5870789 3349430..3349936 1 NC_010322.1 KEGG: psb:Psyr_0770 hypothetical protein; hypothetical protein 3349936 5870789 PputGB1_3004 Pseudomonas putida GB-1 hypothetical protein YP_001669232.1 3349430 D 76869 CDS YP_001669233.1 167034002 5870790 3349946..3350389 1 NC_010322.1 KEGG: pfl:PFL_4721 hypothetical protein; hypothetical protein 3350389 5870790 PputGB1_3005 Pseudomonas putida GB-1 hypothetical protein YP_001669233.1 3349946 D 76869 CDS YP_001669234.1 167034003 5870791 3350621..3352375 1 NC_010322.1 PFAM: glycoside hydrolase 15-related; KEGG: xcb:XC_3171 hypothetical protein; glycoside hydrolase 15-related 3352375 5870791 PputGB1_3006 Pseudomonas putida GB-1 glycoside hydrolase 15-related YP_001669234.1 3350621 D 76869 CDS YP_001669235.1 167034004 5870792 3352467..3352931 1 NC_010322.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pap:PSPA7_3133 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3352931 5870792 PputGB1_3007 Pseudomonas putida GB-1 hemerythrin HHE cation binding domain-containing protein YP_001669235.1 3352467 D 76869 CDS YP_001669236.1 167034005 5870793 3353010..3353258 1 NC_010322.1 KEGG: pen:PSEEN2766 hypothetical protein; hypothetical protein 3353258 5870793 PputGB1_3008 Pseudomonas putida GB-1 hypothetical protein YP_001669236.1 3353010 D 76869 CDS YP_001669237.1 167034006 5870794 complement(3353351..3354490) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_2676 glutathione-independent formaldehyde dehydrogenase; alcohol dehydrogenase 3354490 5870794 PputGB1_3009 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669237.1 3353351 R 76869 CDS YP_001669238.1 167034007 5870795 complement(3354671..3355468) 1 NC_010322.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl_1868 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth 3355468 5870795 PputGB1_3010 Pseudomonas putida GB-1 exodeoxyribonuclease III Xth YP_001669238.1 3354671 R 76869 CDS YP_001669239.1 167034008 5870796 complement(3355465..3355707) 1 NC_010322.1 KEGG: pfo:Pfl_2029 hypothetical protein; hypothetical protein 3355707 5870796 PputGB1_3011 Pseudomonas putida GB-1 hypothetical protein YP_001669239.1 3355465 R 76869 CDS YP_001669240.1 167034009 5870797 3355874..3356413 1 NC_010322.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase 3356413 5870797 PputGB1_3012 Pseudomonas putida GB-1 PfpI family intracellular peptidase YP_001669240.1 3355874 D 76869 CDS YP_001669241.1 167034010 5870798 complement(3356484..3356648) 1 NC_010322.1 KEGG: pfo:Pfl_3702 hypothetical protein; hypothetical protein 3356648 5870798 PputGB1_3013 Pseudomonas putida GB-1 hypothetical protein YP_001669241.1 3356484 R 76869 CDS YP_001669242.1 167034011 5870799 complement(3356922..3357152) 1 NC_010322.1 KEGG: pen:PSEEN2769 metallothionein; metallothionein 3357152 5870799 PputGB1_3014 Pseudomonas putida GB-1 metallothionein YP_001669242.1 3356922 R 76869 CDS YP_001669243.1 167034012 5870800 complement(3357339..3358460) 1 NC_010322.1 ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase 3358460 5870800 PputGB1_3015 Pseudomonas putida GB-1 carboxylate-amine ligase YP_001669243.1 3357339 R 76869 CDS YP_001669244.1 167034013 5870801 complement(3358453..3359406) 1 NC_010322.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small 3359406 5870801 PputGB1_3016 Pseudomonas putida GB-1 methyltransferase small YP_001669244.1 3358453 R 76869 CDS YP_001669245.1 167034014 5870802 complement(3359406..3360731) 1 NC_010322.1 KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein 3360731 5870802 PputGB1_3017 Pseudomonas putida GB-1 hypothetical protein YP_001669245.1 3359406 R 76869 CDS YP_001669246.1 167034015 5870803 3361185..3365300 1 NC_010322.1 KEGG: psa:PST_3560 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase with CheB and CheR activity 3365300 5870803 PputGB1_3018 Pseudomonas putida GB-1 signal transduction histidine kinase with CheB and CheR activity YP_001669246.1 3361185 D 76869 CDS YP_001669247.1 167034016 5870804 3365882..3367045 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bur:Bcep18194_B0529 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 3367045 5870804 PputGB1_3019 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001669247.1 3365882 D 76869 CDS YP_001669248.1 167034017 5870805 3367068..3368729 1 NC_010322.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B0530 choline dehydrogenase; choline dehydrogenase 3368729 5870805 PputGB1_3020 Pseudomonas putida GB-1 choline dehydrogenase YP_001669248.1 3367068 D 76869 CDS YP_001669249.1 167034018 5870806 3368805..3369890 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B0536 transcriptional regulator, AraC family; AraC family transcriptional regulator 3369890 5870806 PputGB1_3021 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669249.1 3368805 D 76869 CDS YP_001669250.1 167034019 5870807 complement(3369962..3370909) 1 NC_010322.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bov:BOV_1524 putative glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein; choline ABC transporter periplasmic binding protein 3370909 5870807 PputGB1_3022 Pseudomonas putida GB-1 choline ABC transporter periplasmic binding protein YP_001669250.1 3369962 R 76869 CDS YP_001669251.1 167034020 5870808 complement(3370965..3371714) 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: bur:Bcep18194_B0534 hypothetical protein; hypothetical protein 3371714 5870808 PputGB1_3023 Pseudomonas putida GB-1 hypothetical protein YP_001669251.1 3370965 R 76869 CDS YP_001669252.1 167034021 5870809 3371918..3373387 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_B5835 aldehyde dehydrogenase; aldehyde dehydrogenase 3373387 5870809 PputGB1_3024 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669252.1 3371918 D 76869 CDS YP_001669253.1 167034022 5870810 complement(3373237..3373632) 1 NC_010322.1 KEGG: pfl:PFL_2353 hypothetical protein; hypothetical protein 3373632 5870810 PputGB1_3025 Pseudomonas putida GB-1 hypothetical protein YP_001669253.1 3373237 R 76869 CDS YP_001669254.1 167034023 5870811 3374043..3374636 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0625 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3374636 5870811 PputGB1_3026 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669254.1 3374043 D 76869 CDS YP_001669255.1 167034024 5870812 3374633..3374992 1 NC_010322.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pmy:Pmen_3163 protein of unknown function DUF861, cupin_3; hypothetical protein 3374992 5870812 PputGB1_3027 Pseudomonas putida GB-1 hypothetical protein YP_001669255.1 3374633 D 76869 CDS YP_001669256.1 167034025 5870813 3375258..3375665 1 NC_010322.1 KEGG: pfl:PFL_4824 hypothetical protein; hypothetical protein 3375665 5870813 PputGB1_3028 Pseudomonas putida GB-1 hypothetical protein YP_001669256.1 3375258 D 76869 CDS YP_001669257.1 167034026 5870814 3375970..3377436 1 NC_010322.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bbr:BB2449 hypothetical protein; hypothetical protein 3377436 5870814 PputGB1_3029 Pseudomonas putida GB-1 hypothetical protein YP_001669257.1 3375970 D 76869 CDS YP_001669258.1 167034027 5870815 3377479..3378966 1 NC_010322.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bbr:BB2448 hypothetical protein; hypothetical protein 3378966 5870815 PputGB1_3030 Pseudomonas putida GB-1 hypothetical protein YP_001669258.1 3377479 D 76869 CDS YP_001669259.1 167034028 5870816 complement(3379304..3380203) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pfl:PFL_2353 hypothetical protein; hypothetical protein 3380203 5870816 PputGB1_3031 Pseudomonas putida GB-1 hypothetical protein YP_001669259.1 3379304 R 76869 CDS YP_001669260.1 167034029 5870817 complement(3380324..3381388) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dac:Daci_4497 male sterility domain; hypothetical protein 3381388 5870817 PputGB1_3032 Pseudomonas putida GB-1 hypothetical protein YP_001669260.1 3380324 R 76869 CDS YP_001669261.1 167034030 5870818 3381462..3381863 1 NC_010322.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pfl:PFL_2355 transcriptional regulator, MerR family; MerR family transcriptional regulator 3381863 5870818 PputGB1_3033 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001669261.1 3381462 D 76869 CDS YP_001669262.1 167034031 5870819 complement(3382017..3382637) 1 NC_010322.1 PFAM: integrase family protein; KEGG: psa:PST_3407 site-specific recombinase, phage integrase family; integrase family protein 3382637 5870819 PputGB1_3034 Pseudomonas putida GB-1 integrase family protein YP_001669262.1 3382017 R 76869 CDS YP_001669263.1 167034032 5870820 3382808..3383602 1 NC_010322.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: dac:Daci_2795 3''-kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 3383602 5870820 PputGB1_3035 Pseudomonas putida GB-1 aminoglycoside/hydroxyurea antibiotic resistance kinase YP_001669263.1 3382808 D 76869 CDS YP_001669264.1 167034033 5870821 3383714..3384271 1 NC_010322.1 KEGG: psp:PSPPH_0157 hypothetical protein; hypothetical protein 3384271 5870821 PputGB1_3036 Pseudomonas putida GB-1 hypothetical protein YP_001669264.1 3383714 D 76869 CDS YP_001669265.1 167034034 5870822 3384567..3386057 1 NC_010322.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: mms:mma_0788 hypothetical protein; hypothetical protein 3386057 5870822 PputGB1_3037 Pseudomonas putida GB-1 hypothetical protein YP_001669265.1 3384567 D 76869 CDS YP_001669266.1 167034035 5870823 3386121..3387416 1 NC_010322.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: shn:Shewana3_2989 protein of unknown function DUF1254; hypothetical protein 3387416 5870823 PputGB1_3038 Pseudomonas putida GB-1 hypothetical protein YP_001669266.1 3386121 D 76869 CDS YP_001669267.1 167034036 5870824 3387818..3388291 1 NC_010322.1 PFAM: OsmC family protein; KEGG: aci:ACIAD0918 hypothetical protein; OsmC family protein 3388291 5870824 PputGB1_3039 Pseudomonas putida GB-1 OsmC family protein YP_001669267.1 3387818 D 76869 CDS YP_001669268.1 167034037 5870825 3388390..3388740 1 NC_010322.1 KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 3388740 5870825 PputGB1_3040 Pseudomonas putida GB-1 hypothetical protein YP_001669268.1 3388390 D 76869 CDS YP_001669269.1 167034038 5870826 3388830..3390083 1 NC_010322.1 PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 3390083 5870826 PputGB1_3041 Pseudomonas putida GB-1 outer membrane efflux protein YP_001669269.1 3388830 D 76869 CDS YP_001669270.1 167034039 5870827 3390080..3391543 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 3391543 5870827 PputGB1_3042 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001669270.1 3390080 D 76869 CDS YP_001669271.1 167034040 5870828 3391540..3394686 1 NC_010322.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 3394686 5870828 PputGB1_3043 Pseudomonas putida GB-1 CzcA family heavy metal efflux protein YP_001669271.1 3391540 D 76869 CDS YP_001669272.1 167034041 5870829 complement(3394857..3395834) 1 NC_010322.1 KEGG: pmy:Pmen_3461 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 3395834 5870829 PputGB1_3044 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001669272.1 3394857 R 76869 CDS YP_001669273.1 167034042 5870830 3396145..3397827 1 NC_010322.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: oan:Oant_3482 YidE/YbjL duplication; YidE/YbjL duplication 3397827 5870830 PputGB1_3045 Pseudomonas putida GB-1 YidE/YbjL duplication YP_001669273.1 3396145 D 76869 CDS YP_001669274.1 167034043 5870831 3398040..3399332 1 NC_010322.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rru:Rru_A1313 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3399332 5870831 PputGB1_3046 Pseudomonas putida GB-1 aromatic hydrocarbon degradation membrane protein YP_001669274.1 3398040 D 76869 CDS YP_001669275.1 167034044 5870832 3399383..3400051 1 NC_010322.1 KEGG: pfl:PFL_2838 lipoprotein, putative; putative lipoprotein 3400051 5870832 PputGB1_3047 Pseudomonas putida GB-1 putative lipoprotein YP_001669275.1 3399383 D 76869 CDS YP_001669276.1 167034045 5870833 3400110..3401138 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mtc:MT3167 transcriptional regulator, AraC family; AraC family transcriptional regulator 3401138 5870833 PputGB1_3048 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669276.1 3400110 D 76869 CDS YP_001669277.1 167034046 5870834 complement(3401146..3402774) 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3289 ion mechanosensitive channel; mechanosensitive ion channel protein MscS 3402774 5870834 PputGB1_3049 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001669277.1 3401146 R 76869 CDS YP_001669278.1 167034047 5870835 complement(3402818..3405346) 1 NC_010322.1 PFAM: Spermine synthase; KEGG: pfl:PFL_2841 spermine/spermidine synthase family protein; spermine synthase 3405346 5870835 PputGB1_3050 Pseudomonas putida GB-1 spermine synthase YP_001669278.1 3402818 R 76869 CDS YP_001669279.1 167034048 5870836 complement(3405428..3406996) 1 NC_010322.1 PFAM: sulfatase; KEGG: pfl:PFL_2842 sulfatase family protein; sulfatase 3406996 5870836 PputGB1_3051 Pseudomonas putida GB-1 sulfatase YP_001669279.1 3405428 R 76869 CDS YP_001669280.1 167034049 5870837 complement(3407081..3408091) 1 NC_010322.1 KEGG: pfl:PFL_2843 nonspecific acid phosphatase; nonspecific acid phosphatase 3408091 5870837 PputGB1_3052 Pseudomonas putida GB-1 nonspecific acid phosphatase YP_001669280.1 3407081 R 76869 CDS YP_001669281.1 167034050 5870838 complement(3408136..3409446) 1 NC_010322.1 KEGG: pfl:PFL_2844 hypothetical protein; hypothetical protein 3409446 5870838 PputGB1_3053 Pseudomonas putida GB-1 hypothetical protein YP_001669281.1 3408136 R 76869 CDS YP_001669282.1 167034051 5870839 complement(3409443..3411044) 1 NC_010322.1 PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pfl:PFL_2845 TPR domain protein, putative; hypothetical protein 3411044 5870839 PputGB1_3054 Pseudomonas putida GB-1 hypothetical protein YP_001669282.1 3409443 R 76869 CDS YP_001669283.1 167034052 5870840 complement(3411041..3412015) 1 NC_010322.1 PFAM: von Willebrand factor type A; KEGG: pfl:PFL_2846 von Willebrand factor type A domain protein; von Willebrand factor type A 3412015 5870840 PputGB1_3055 Pseudomonas putida GB-1 von Willebrand factor type A YP_001669283.1 3411041 R 76869 CDS YP_001669284.1 167034053 5870841 complement(3412002..3412499) 1 NC_010322.1 KEGG: pfl:PFL_2847 alpha-2 type XI collagen; alpha-2 type XI collagen 3412499 5870841 PputGB1_3056 Pseudomonas putida GB-1 alpha-2 type XI collagen YP_001669284.1 3412002 R 76869 CDS YP_001669285.1 167034054 5870842 complement(3412496..3413446) 1 NC_010322.1 PFAM: protein of unknown function DUF58; KEGG: pfl:PFL_2848 hypothetical protein; hypothetical protein 3413446 5870842 PputGB1_3057 Pseudomonas putida GB-1 hypothetical protein YP_001669285.1 3412496 R 76869 CDS YP_001669286.1 167034055 5870843 complement(3413458..3414432) 1 NC_010322.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pfl:PFL_2849 MoxR domain protein; ATPase 3414432 5870843 PputGB1_3058 Pseudomonas putida GB-1 ATPase YP_001669286.1 3413458 R 76869 CDS YP_001669287.1 167034056 5870844 complement(3414526..3416841) 1 NC_010322.1 PFAM: TPR repeat-containing protein; PBS lyase HEAT domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll2660 hypothetical protein; hypothetical protein 3416841 5870844 PputGB1_3059 Pseudomonas putida GB-1 hypothetical protein YP_001669287.1 3414526 R 76869 CDS YP_001669288.1 167034057 5870845 complement(3416820..3417032) 1 NC_010322.1 KEGG: bbr:BB2448 hypothetical protein; hypothetical protein 3417032 5870845 PputGB1_3060 Pseudomonas putida GB-1 hypothetical protein YP_001669288.1 3416820 R 76869 CDS YP_001669289.1 167034058 5870846 complement(3417033..3417902) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6; hypothetical protein 3417902 5870846 PputGB1_3061 Pseudomonas putida GB-1 hypothetical protein YP_001669289.1 3417033 R 76869 CDS YP_001669290.1 167034059 5870847 3418024..3419406 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_1890 transcriptional regulator, GntR family with aminotransferase domain; transcriptional regulator 3419406 5870847 PputGB1_3062 Pseudomonas putida GB-1 transcriptional regulator YP_001669290.1 3418024 D 76869 CDS YP_001669291.1 167034060 5870848 complement(3419432..3420073) 1 NC_010322.1 PFAM: protein of unknown function DUF1109; KEGG: pen:PSEEN3271 hypothetical protein; hypothetical protein 3420073 5870848 PputGB1_3063 Pseudomonas putida GB-1 hypothetical protein YP_001669291.1 3419432 R 76869 CDS YP_001669292.1 167034061 5870849 complement(3420060..3420599) 1 NC_010322.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3420599 5870849 PputGB1_3064 Pseudomonas putida GB-1 RNA polymerase sigma factor YP_001669292.1 3420060 R 76869 CDS YP_001669293.1 167034062 5870850 3420834..3421121 1 NC_010322.1 KEGG: pen:PSEEN3274 hypothetical protein; hypothetical protein 3421121 5870850 PputGB1_3065 Pseudomonas putida GB-1 hypothetical protein YP_001669293.1 3420834 D 76869 CDS YP_001669294.1 167034063 5870851 3421138..3421971 1 NC_010322.1 PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3275 hypothetical protein; hypothetical protein 3421971 5870851 PputGB1_3066 Pseudomonas putida GB-1 hypothetical protein YP_001669294.1 3421138 D 76869 CDS YP_001669295.1 167034064 5870852 3421968..3422723 1 NC_010322.1 KEGG: pen:PSEEN3276 hypothetical protein; hypothetical protein 3422723 5870852 PputGB1_3067 Pseudomonas putida GB-1 hypothetical protein YP_001669295.1 3421968 D 76869 CDS YP_001669296.1 167034065 5870853 3422734..3423201 1 NC_010322.1 PFAM: DoxX family protein; KEGG: pen:PSEEN3277 hypothetical protein; DoxX family protein 3423201 5870853 PputGB1_3068 Pseudomonas putida GB-1 DoxX family protein YP_001669296.1 3422734 D 76869 CDS YP_001669297.1 167034066 5870854 complement(3423216..3424166) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2717 transcriptional regulator, AraC family; AraC family transcriptional regulator 3424166 5870854 PputGB1_3069 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669297.1 3423216 R 76869 CDS YP_001669298.1 167034067 5870855 3424275..3425072 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_2716 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3425072 5870855 PputGB1_3070 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001669298.1 3424275 D 76869 CDS YP_001669299.1 167034068 5870856 3425223..3426230 1 NC_010322.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5645 zinc-binding alcohol dehydrogenase family protein; zinc-binding alcohol dehydrogenase family protein 3426230 5870856 PputGB1_3071 Pseudomonas putida GB-1 zinc-binding alcohol dehydrogenase family protein YP_001669299.1 3425223 D 76869 CDS YP_001669300.1 167034069 5870857 3426413..3427165 1 NC_010322.1 KEGG: rme:Rmet_5409 hypothetical protein; hypothetical protein 3427165 5870857 PputGB1_3072 Pseudomonas putida GB-1 hypothetical protein YP_001669300.1 3426413 D 76869 CDS YP_001669301.1 167034070 5870858 3427162..3428508 1 NC_010322.1 KEGG: rme:Rmet_5410 hypothetical protein; hypothetical protein 3428508 5870858 PputGB1_3073 Pseudomonas putida GB-1 hypothetical protein YP_001669301.1 3427162 D 76869 CDS YP_001669302.1 167034071 5870859 3428508..3430598 1 NC_010322.1 PFAM: peptidase M50; KEGG: rme:Rmet_5411 peptidase M50; peptidase M50 3430598 5870859 PputGB1_3074 Pseudomonas putida GB-1 peptidase M50 YP_001669302.1 3428508 D 76869 CDS YP_001669303.1 167034072 5870860 3430693..3441219 1 NC_010322.1 TIGRFAM: conserved repeat domain protein; outer membrane adhesin like proteiin; KEGG: rme:Rmet_5407 hypothetical protein; outer membrane adhesin like protein 3441219 5870860 PputGB1_3075 Pseudomonas putida GB-1 outer membrane adhesin like protein YP_001669303.1 3430693 D 76869 CDS YP_001669304.1 167034073 5870861 3441257..3442765 1 NC_010322.1 PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5408 outer membrane efflux protein; outer membrane efflux protein 3442765 5870861 PputGB1_3076 Pseudomonas putida GB-1 outer membrane efflux protein YP_001669304.1 3441257 D 76869 CDS YP_001669305.1 167034074 5870862 3442886..3443233 1 NC_010322.1 PFAM: regulatory protein ArsR; KEGG: pfl:PFL_2186 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator 3443233 5870862 PputGB1_3077 Pseudomonas putida GB-1 ArsR family transcriptional regulator YP_001669305.1 3442886 D 76869 CDS YP_001669306.1 167034075 5870863 3443255..3444538 1 NC_010322.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pen:PSEEN3307 arsenite efflux pump; arsenical pump membrane protein 3444538 5870863 PputGB1_3078 Pseudomonas putida GB-1 arsenical pump membrane protein YP_001669306.1 3443255 D 76869 CDS YP_001669307.1 167034076 5870864 3444567..3445037 1 NC_010322.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN3308 arsenate reductase; protein tyrosine phosphatase 3445037 5870864 PputGB1_3079 Pseudomonas putida GB-1 protein tyrosine phosphatase YP_001669307.1 3444567 D 76869 CDS YP_001669308.1 167034077 5870865 3445051..3445752 1 NC_010322.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_2183 ArsH protein; arsenical resistance protein ArsH 3445752 5870865 PputGB1_3080 Pseudomonas putida GB-1 arsenical resistance protein ArsH YP_001669308.1 3445051 D 76869 CDS YP_001669309.1 167034078 5870866 complement(3445807..3446097) 1 NC_010322.1 KEGG: pen:PSEEN2771 hypothetical protein; hypothetical protein 3446097 5870866 PputGB1_3081 Pseudomonas putida GB-1 hypothetical protein YP_001669309.1 3445807 R 76869 CDS YP_001669310.1 167034079 5870867 complement(3446266..3446523) 1 NC_010322.1 hypothetical protein 3446523 5870867 PputGB1_3082 Pseudomonas putida GB-1 hypothetical protein YP_001669310.1 3446266 R 76869 CDS YP_001669311.1 167034080 5870868 complement(3446718..3447902) 1 NC_010322.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pfl:PFL_3535 peptidase, M20/M25/M40 family; amidohydrolase 3447902 5870868 PputGB1_3083 Pseudomonas putida GB-1 amidohydrolase YP_001669311.1 3446718 R 76869 CDS YP_001669312.1 167034081 5870869 complement(3447904..3449205) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3534 proline/betaine transporter; major facilitator superfamily transporter 3449205 5870869 PputGB1_3084 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669312.1 3447904 R 76869 CDS YP_001669313.1 167034082 5870870 3449579..3450709 1 NC_010322.1 KEGG: bam:Bamb_5897 outer membrane protein (porin)-like protein; hypothetical protein 3450709 5870870 PputGB1_3085 Pseudomonas putida GB-1 hypothetical protein YP_001669313.1 3449579 D 76869 CDS YP_001669314.1 167034083 5870871 complement(3450686..3451624) 1 NC_010322.1 PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5417 transcriptional regulator, LysR family; MarR family transcriptional regulator 3451624 5870871 PputGB1_3086 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001669314.1 3450686 R 76869 CDS YP_001669315.1 167034084 5870872 complement(3451711..3452211) 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_I1124 AhpC/TSA family protein; redoxin domain-containing protein 3452211 5870872 PputGB1_3087 Pseudomonas putida GB-1 redoxin domain-containing protein YP_001669315.1 3451711 R 76869 CDS YP_001669316.1 167034085 5870873 complement(3452315..3452455) 1 NC_010322.1 hypothetical protein 3452455 5870873 PputGB1_3088 Pseudomonas putida GB-1 hypothetical protein YP_001669316.1 3452315 R 76869 CDS YP_001669317.1 167034086 5870874 3452955..3453938 1 NC_010322.1 PFAM: Domain of unknown function DUF1852; KEGG: pfl:PFL_3510 hypothetical protein; hypothetical protein 3453938 5870874 PputGB1_3089 Pseudomonas putida GB-1 hypothetical protein YP_001669317.1 3452955 D 76869 CDS YP_001669318.1 167034087 5870875 3453966..3455000 1 NC_010322.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3455000 5870875 PputGB1_3090 Pseudomonas putida GB-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001669318.1 3453966 D 76869 CDS YP_001669319.1 167034088 5870876 3455026..3455535 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pfl:PFL_3512 flavin reductase domain protein; flavin reductase domain-containing protein 3455535 5870876 PputGB1_3091 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001669319.1 3455026 D 76869 CDS YP_001669320.1 167034089 5870877 3455634..3456563 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_2852 transcriptional regulator MetR; LysR family transcriptional regulator 3456563 5870877 PputGB1_3092 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669320.1 3455634 D 76869 CDS YP_001669321.1 167034090 5870878 complement(3456609..3457583) 1 NC_010322.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3457583 5870878 PputGB1_3093 Pseudomonas putida GB-1 lipoyl synthase YP_001669321.1 3456609 R 76869 CDS YP_001669322.1 167034091 5870879 complement(3457618..3458871) 1 NC_010322.1 PFAM: glycine hydroxymethyltransferase; KEGG: psp:PSPPH_4750 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 3458871 5870879 PputGB1_3094 Pseudomonas putida GB-1 glycine hydroxymethyltransferase YP_001669322.1 3457618 R 76869 CDS YP_001669323.1 167034092 5870880 complement(3458904..3461774) 1 NC_010322.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3461774 5870880 PputGB1_3095 Pseudomonas putida GB-1 glycine dehydrogenase YP_001669323.1 3458904 R 76869 CDS YP_001669324.1 167034093 5870881 complement(3461790..3462167) 1 NC_010322.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3462167 5870881 PputGB1_3096 Pseudomonas putida GB-1 glycine cleavage system protein H YP_001669324.1 3461790 R 76869 CDS YP_001669325.1 167034094 5870882 complement(3462428..3463960) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pfl:PFL_4639 sigma-54 dependent transcriptional regulator TyrR, putative; putative PAS/PAC sensor protein 3463960 5870882 PputGB1_3097 Pseudomonas putida GB-1 putative PAS/PAC sensor protein YP_001669325.1 3462428 R 76869 CDS YP_001669326.1 167034095 5870883 complement(3464055..3465479) 1 NC_010322.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 3465479 5870883 PputGB1_3098 Pseudomonas putida GB-1 D-alanine/D-serine/glycine permease YP_001669326.1 3464055 R 76869 CDS YP_001669327.1 167034096 5870884 complement(3465833..3467521) 1 NC_010322.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 3467521 5870884 PputGB1_3099 Pseudomonas putida GB-1 choline dehydrogenase YP_001669327.1 3465833 R 76869 CDS YP_001669328.1 167034097 5870885 complement(3467526..3468995) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro05709 hypothetical protein; cytosine/purines uracil thiamine allantoin permease 3468995 5870885 PputGB1_3100 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001669328.1 3467526 R 76869 CDS YP_001669329.1 167034098 5870886 complement(3468992..3469171) 1 NC_010322.1 hypothetical protein 3469171 5870886 PputGB1_3101 Pseudomonas putida GB-1 hypothetical protein YP_001669329.1 3468992 R 76869 CDS YP_001669330.1 167034099 5870887 complement(3469268..3470776) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: bch:Bcen2424_5056 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase 3470776 5870887 PputGB1_3102 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669330.1 3469268 R 76869 CDS YP_001669331.1 167034100 5870888 complement(3470792..3471763) 1 NC_010322.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sil:SPO0678 agmatinase, putative; agmatinase 3471763 5870888 PputGB1_3103 Pseudomonas putida GB-1 agmatinase YP_001669331.1 3470792 R 76869 CDS YP_001669332.1 167034101 5870889 3472032..3472958 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_46060 transcriptional regulator; LysR family transcriptional regulator 3472958 5870889 PputGB1_3104 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669332.1 3472032 D 76869 CDS YP_001669333.1 167034102 5870890 complement(3473066..3473629) 1 NC_010322.1 KEGG: gfo:GFO_2590 hypothetical protein; hypothetical protein 3473629 5870890 PputGB1_3105 Pseudomonas putida GB-1 hypothetical protein YP_001669333.1 3473066 R 76869 CDS YP_001669334.1 167034103 5870891 3474181..3475590 1 NC_010322.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pfl:PFL_2518 domain of unknown function (DUF404) family; hypothetical protein 3475590 5870891 PputGB1_3106 Pseudomonas putida GB-1 hypothetical protein YP_001669334.1 3474181 D 76869 CDS YP_001669335.1 167034104 5870892 3475594..3476544 1 NC_010322.1 PFAM: protein of unknown function DUF403; KEGG: pfl:PFL_2519 hypothetical protein; hypothetical protein 3476544 5870892 PputGB1_3107 Pseudomonas putida GB-1 hypothetical protein YP_001669335.1 3475594 D 76869 CDS YP_001669336.1 167034105 5870893 3476541..3477320 1 NC_010322.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pfl:PFL_2520 transglutaminase-like superfamily domain protein; transglutaminase domain-containing protein 3477320 5870893 PputGB1_3108 Pseudomonas putida GB-1 transglutaminase domain-containing protein YP_001669336.1 3476541 D 76869 CDS YP_001669337.1 167034106 5870894 3477394..3478116 1 NC_010322.1 KEGG: pae:PA1733 putative proteasome-type protease; putative proteasome-type protease 3478116 5870894 PputGB1_3109 Pseudomonas putida GB-1 putative proteasome-type protease YP_001669337.1 3477394 D 76869 CDS YP_001669338.1 167034107 5870895 3478193..3479329 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4999 hypothetical protein; major facilitator superfamily transporter 3479329 5870895 PputGB1_3110 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669338.1 3478193 D 76869 CDS YP_001669339.1 167034108 5870896 3479469..3480812 1 NC_010322.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: asa:ASA_2939 DsdX permease; gluconate transporter 3480812 5870896 PputGB1_3111 Pseudomonas putida GB-1 gluconate transporter YP_001669339.1 3479469 D 76869 CDS YP_001669340.1 167034109 5870897 3480847..3482184 1 NC_010322.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3482184 5870897 PputGB1_3112 Pseudomonas putida GB-1 D-serine dehydratase YP_001669340.1 3480847 D 76869 CDS YP_001669341.1 167034110 5870898 3482220..3483167 1 NC_010322.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3483167 5870898 PputGB1_3113 Pseudomonas putida GB-1 DNA-binding transcriptional regulator DsdC YP_001669341.1 3482220 D 76869 CDS YP_001669342.1 167034111 5870899 3483353..3485449 1 NC_010322.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psa:PST_3455 ATPase of the AAA+ class; ATPase central domain-containing protein 3485449 5870899 PputGB1_3114 Pseudomonas putida GB-1 ATPase central domain-containing protein YP_001669342.1 3483353 D 76869 CDS YP_001669343.1 167034112 5870900 3485523..3486554 1 NC_010322.1 KEGG: psa:PST_3457 transcriptional factor MdcH; transcriptional factor MdcH 3486554 5870900 PputGB1_3115 Pseudomonas putida GB-1 transcriptional factor MdcH YP_001669343.1 3485523 D 76869 CDS YP_001669344.1 167034113 5870901 3486706..3487356 1 NC_010322.1 KEGG: she:Shewmr4_1721 hypothetical protein; hypothetical protein 3487356 5870901 PputGB1_3116 Pseudomonas putida GB-1 hypothetical protein YP_001669344.1 3486706 D 76869 CDS YP_001669345.1 167034114 5870902 3487537..3490161 1 NC_010322.1 KEGG: afw:Anae109_4010 hypothetical protein; hypothetical protein 3490161 5870902 PputGB1_3117 Pseudomonas putida GB-1 hypothetical protein YP_001669345.1 3487537 D 76869 CDS YP_001669346.1 167034115 5870903 3490164..3493349 1 NC_010322.1 PFAM: UvrD/REP helicase; KEGG: afw:Anae109_4011 UvrD/REP helicase; UvrD/REP helicase 3493349 5870903 PputGB1_3118 Pseudomonas putida GB-1 UvrD/REP helicase YP_001669346.1 3490164 D 76869 CDS YP_001669347.1 167034116 5870904 3493429..3493728 1 NC_010322.1 hypothetical protein 3493728 5870904 PputGB1_3119 Pseudomonas putida GB-1 hypothetical protein YP_001669347.1 3493429 D 76869 CDS YP_001669348.1 167034117 5870905 complement(3493764..3495428) 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_2226 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase 3495428 5870905 PputGB1_3120 Pseudomonas putida GB-1 PAS/PAC sensor hybrid histidine kinase YP_001669348.1 3493764 R 76869 CDS YP_001669349.1 167034118 5870906 complement(3495412..3496575) 1 NC_010322.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pfl:PFL_2225 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 3496575 5870906 PputGB1_3121 Pseudomonas putida GB-1 iron-containing alcohol dehydrogenase YP_001669349.1 3495412 R 76869 CDS YP_001669350.1 167034119 5870907 complement(3496665..3496937) 1 NC_010322.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 3496937 5870907 PputGB1_3122 Pseudomonas putida GB-1 pyrroloquinoline quinone biosynthesis protein PqqD YP_001669350.1 3496665 R 76869 CDS YP_001669351.1 167034120 5870908 complement(3497260..3498780) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pfl:PFL_2222 aldehyde dehydrogenase; aldehyde dehydrogenase 3498780 5870908 PputGB1_3123 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669351.1 3497260 R 76869 CDS YP_001669352.1 167034121 5870909 complement(3498907..3500694) 1 NC_010322.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pfl:PFL_2221 quinoprotein ethanol dehydrogenase; methanol/ethanol family PQQ-dependent dehydrogenase 3500694 5870909 PputGB1_3124 Pseudomonas putida GB-1 methanol/ethanol family PQQ-dependent dehydrogenase YP_001669352.1 3498907 R 76869 CDS YP_001669353.1 167034122 5870910 complement(3501097..3502038) 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase, putative; beta-lactamase domain-containing protein 3502038 5870910 PputGB1_3125 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001669353.1 3501097 R 76869 CDS YP_001669354.1 167034123 5870911 complement(3502077..3502838) 1 NC_010322.1 KEGG: pfl:PFL_2219 hypothetical protein; hypothetical protein 3502838 5870911 PputGB1_3126 Pseudomonas putida GB-1 hypothetical protein YP_001669354.1 3502077 R 76869 CDS YP_001669355.1 167034124 5870912 complement(3502847..3503722) 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pfl:PFL_2218 periplasmic binding protein, putative; extracellular solute-binding protein 3503722 5870912 PputGB1_3127 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669355.1 3502847 R 76869 CDS YP_001669356.1 167034125 5870913 complement(3503728..3504189) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pfl:PFL_2217 cytochrome c-550; cytochrome c class I 3504189 5870913 PputGB1_3128 Pseudomonas putida GB-1 cytochrome c class I YP_001669356.1 3503728 R 76869 CDS YP_001669357.1 167034126 5870914 3504444..3506339 1 NC_010322.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pfl:PFL_2216 quinoprotein ethanol dehydrogenase; methanol/ethanol family PQQ-dependent dehydrogenase 3506339 5870914 PputGB1_3129 Pseudomonas putida GB-1 methanol/ethanol family PQQ-dependent dehydrogenase YP_001669357.1 3504444 D 76869 CDS YP_001669358.1 167034127 5870915 3506407..3507066 1 NC_010322.1 PFAM: pentapeptide repeat protein; KEGG: pfl:PFL_2215 pentapeptide repeat family protein; pentapeptide repeat-containing protein 3507066 5870915 PputGB1_3130 Pseudomonas putida GB-1 pentapeptide repeat-containing protein YP_001669358.1 3506407 D 76869 CDS YP_001669359.1 167034128 5870916 complement(3507356..3507994) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_2212 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 3507994 5870916 PputGB1_3131 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001669359.1 3507356 R 76869 CDS YP_001669360.1 167034129 5870917 complement(3507994..3509268) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pfl:PFL_2211 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3509268 5870917 PputGB1_3132 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001669360.1 3507994 R 76869 CDS YP_001669361.1 167034130 5870918 3509419..3510597 1 NC_010322.1 KEGG: pfl:PFL_2209 hypothetical protein; hypothetical protein 3510597 5870918 PputGB1_3133 Pseudomonas putida GB-1 hypothetical protein YP_001669361.1 3509419 D 76869 CDS YP_001669362.1 167034131 5870919 3510628..3511617 1 NC_010322.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pfl:PFL_2208 YVTN beta-propeller repeat family protein; hypothetical protein 3511617 5870919 PputGB1_3134 Pseudomonas putida GB-1 hypothetical protein YP_001669362.1 3510628 D 76869 CDS YP_001669363.1 167034132 5870920 3511614..3512354 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2207 ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 3512354 5870920 PputGB1_3135 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669363.1 3511614 D 76869 CDS YP_001669364.1 167034133 5870921 3512351..3513142 1 NC_010322.1 PFAM: ABC-2 type transporter; KEGG: pfl:PFL_2206 ABC efflux transporter, permease protein; ABC transporter 3513142 5870921 PputGB1_3136 Pseudomonas putida GB-1 ABC transporter YP_001669364.1 3512351 D 76869 CDS YP_001669365.1 167034134 5870922 3513280..3513828 1 NC_010322.1 KEGG: pfl:PFL_2205 hypothetical protein; hypothetical protein 3513828 5870922 PputGB1_3137 Pseudomonas putida GB-1 hypothetical protein YP_001669365.1 3513280 D 76869 CDS YP_001669366.1 167034135 5870923 3513887..3514552 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_2204 DNA-binding response regulator AgmR; two component LuxR family transcriptional regulator 3514552 5870923 PputGB1_3138 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001669366.1 3513887 D 76869 CDS YP_001669367.1 167034136 5870924 complement(3514537..3516444) 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pfl:PFL_2203 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase 3516444 5870924 PputGB1_3139 Pseudomonas putida GB-1 PAS/PAC sensor hybrid histidine kinase YP_001669367.1 3514537 R 76869 CDS YP_001669368.1 167034137 5870925 complement(3516413..3517576) 1 NC_010322.1 PFAM: domain of unknown function DUF1745; KEGG: pfl:PFL_2202 hypothetical protein; hypothetical protein 3517576 5870925 PputGB1_3140 Pseudomonas putida GB-1 hypothetical protein YP_001669368.1 3516413 R 76869 CDS YP_001669369.1 167034138 5870926 complement(3517723..3518910) 1 NC_010322.1 KEGG: pfl:PFL_2201 hypothetical protein; hypothetical protein 3518910 5870926 PputGB1_3141 Pseudomonas putida GB-1 hypothetical protein YP_001669369.1 3517723 R 76869 CDS YP_001669370.1 167034139 5870927 complement(3519152..3519751) 1 NC_010322.1 KEGG: hch:HCH_04391 hypothetical protein; hypothetical protein 3519751 5870927 PputGB1_3142 Pseudomonas putida GB-1 hypothetical protein YP_001669370.1 3519152 R 76869 CDS YP_001669371.1 167034140 5870928 complement(3519751..3520449) 1 NC_010322.1 hypothetical protein 3520449 5870928 PputGB1_3143 Pseudomonas putida GB-1 hypothetical protein YP_001669371.1 3519751 R 76869 CDS YP_001669372.1 167034141 5870929 complement(3520544..3521332) 1 NC_010322.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 3521332 5870929 PputGB1_3144 Pseudomonas putida GB-1 phosphate ABC transporter ATP-binding protein YP_001669372.1 3520544 R 76869 CDS YP_001669373.1 167034142 5870930 complement(3521383..3522276) 1 NC_010322.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2479 phosphate transport system permease protein 2; phosphate ABC transporter permease 3522276 5870930 PputGB1_3145 Pseudomonas putida GB-1 phosphate ABC transporter permease YP_001669373.1 3521383 R 76869 CDS YP_001669374.1 167034143 5870931 complement(3522273..3523241) 1 NC_010322.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2478 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 3523241 5870931 PputGB1_3146 Pseudomonas putida GB-1 phosphate ABC transporter permease YP_001669374.1 3522273 R 76869 CDS YP_001669375.1 167034144 5870932 complement(3523312..3524343) 1 NC_010322.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ana:all4575 phosphate transport system substrate-binding protein; phosphate ABC transporter substrate-binding protein 3524343 5870932 PputGB1_3147 Pseudomonas putida GB-1 phosphate ABC transporter substrate-binding protein YP_001669375.1 3523312 R 76869 CDS YP_001669376.1 167034145 5870933 3524525..3525442 1 NC_010322.1 PFAM: protein of unknown function DUF344; KEGG: pap:PSPA7_2825 hypothetical protein; hypothetical protein 3525442 5870933 PputGB1_3148 Pseudomonas putida GB-1 hypothetical protein YP_001669376.1 3524525 D 76869 CDS YP_001669377.1 167034146 5870934 complement(3525516..3525749) 1 NC_010322.1 hypothetical protein 3525749 5870934 PputGB1_3149 Pseudomonas putida GB-1 hypothetical protein YP_001669377.1 3525516 R 76869 CDS YP_001669378.1 167034147 5870935 complement(3525834..3526271) 1 NC_010322.1 PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: gga:418178 microsomal glutathione S-transferase 1; eicosanoid and glutathione metabolism membrane protein 3526271 5870935 PputGB1_3150 Pseudomonas putida GB-1 eicosanoid and glutathione metabolism membrane protein YP_001669378.1 3525834 R 76869 CDS YP_001669379.1 167034148 5870936 complement(3526268..3526582) 1 NC_010322.1 KEGG: pfl:PFL_2443 hypothetical protein; hypothetical protein 3526582 5870936 PputGB1_3151 Pseudomonas putida GB-1 hypothetical protein YP_001669379.1 3526268 R 76869 CDS YP_001669380.1 167034149 5870937 3526688..3527503 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pfl:PFL_2446 DNA-binding protein; XRE family transcriptional regulator 3527503 5870937 PputGB1_3152 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669380.1 3526688 D 76869 CDS YP_001669381.1 167034150 5870938 complement(3527493..3528278) 1 NC_010322.1 PFAM: Hydratase/decarboxylase; KEGG: bja:blr0622 putative hydratase; hydratase/decarboxylase 3528278 5870938 PputGB1_3153 Pseudomonas putida GB-1 hydratase/decarboxylase YP_001669381.1 3527493 R 76869 CDS YP_001669382.1 167034151 5870939 complement(3528396..3529739) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: ecv:APECO1_2505 hypothetical protein; major facilitator superfamily transporter 3529739 5870939 PputGB1_3154 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669382.1 3528396 R 76869 CDS YP_001669383.1 167034152 5870940 complement(3529784..3530926) 1 NC_010322.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: bbr:BB1480 NAD-dependent 4-hydroxybutyrate dehydrogenase; iron-containing alcohol dehydrogenase 3530926 5870940 PputGB1_3155 Pseudomonas putida GB-1 iron-containing alcohol dehydrogenase YP_001669383.1 3529784 R 76869 CDS YP_001669384.1 167034153 5870941 3531069..3532010 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1479 putative regulatory protein; LysR family transcriptional regulator 3532010 5870941 PputGB1_3156 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669384.1 3531069 D 76869 CDS YP_001669385.1 167034154 5870942 3532128..3533351 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pfl:PFL_4167 monooxygenase, DszC family; type 2 acyl-CoA dehydrogenase 3533351 5870942 PputGB1_3157 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001669385.1 3532128 D 76869 CDS YP_001669386.1 167034155 5870943 3533362..3534027 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4166 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3534027 5870943 PputGB1_3158 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669386.1 3533362 D 76869 CDS YP_001669387.1 167034156 5870944 3534054..3534824 1 NC_010322.1 PFAM: NLPA lipoprotein; KEGG: pfl:PFL_4165 lipoprotein, NlpA family; NLPA lipoprotein 3534824 5870944 PputGB1_3159 Pseudomonas putida GB-1 NLPA lipoprotein YP_001669387.1 3534054 D 76869 CDS YP_001669388.1 167034157 5870945 3534866..3535879 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_34270 putative ATP-binding component of ABC transporter; ABC transporter-like protein 3535879 5870945 PputGB1_3160 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669388.1 3534866 D 76869 CDS YP_001669389.1 167034158 5870946 complement(3535880..3538570) 1 NC_010322.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Rhodanese domain protein; KEGG: pst:PSPTO_2632 rhodanese domain protein/cystathionine beta-lyase; cystathionine beta-lyase 3538570 5870946 PputGB1_3161 Pseudomonas putida GB-1 cystathionine beta-lyase YP_001669389.1 3535880 R 76869 CDS YP_001669390.1 167034159 5870947 complement(3538619..3539209) 1 NC_010322.1 KEGG: pst:PSPTO_2631 hypothetical protein; hypothetical protein 3539209 5870947 PputGB1_3162 Pseudomonas putida GB-1 hypothetical protein YP_001669390.1 3538619 R 76869 CDS YP_001669391.1 167034160 5870948 complement(3539239..3540057) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2630 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3540057 5870948 PputGB1_3163 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669391.1 3539239 R 76869 CDS YP_001669392.1 167034161 5870949 complement(3540047..3540727) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2629 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3540727 5870949 PputGB1_3164 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001669392.1 3540047 R 76869 CDS YP_001669393.1 167034162 5870950 complement(3540717..3541451) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2628 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3541451 5870950 PputGB1_3165 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001669393.1 3540717 R 76869 CDS YP_001669394.1 167034163 5870951 complement(3541451..3542290) 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pst:PSPTO_2627 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 3542290 5870951 PputGB1_3166 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669394.1 3541451 R 76869 CDS YP_001669395.1 167034164 5870952 3542570..3543421 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_2626 transcriptional regulator, LysR family; LysR family transcriptional regulator 3543421 5870952 PputGB1_3167 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669395.1 3542570 D 76869 CDS YP_001669396.1 167034165 5870953 complement(3543440..3543904) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_I0319 AsnC family regulatory protein; AsnC family transcriptional regulator 3543904 5870953 PputGB1_3168 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001669396.1 3543440 R 76869 CDS YP_001669397.1 167034166 5870954 3544024..3544743 1 NC_010322.1 PFAM: AzlC family protein; KEGG: bte:BTH_I0320 brancheD-chain amino acid transport protein AzlC; AzlC family protein 3544743 5870954 PputGB1_3169 Pseudomonas putida GB-1 AzlC family protein YP_001669397.1 3544024 D 76869 CDS YP_001669398.1 167034167 5870955 3544740..3545042 1 NC_010322.1 PFAM: branched-chain amino acid transport; KEGG: bpd:BURPS668_0363 AzlD family protein; branched-chain amino acid transport 3545042 5870955 PputGB1_3170 Pseudomonas putida GB-1 branched-chain amino acid transport YP_001669398.1 3544740 D 76869 CDS YP_001669399.1 167034168 5870956 3545202..3546077 1 NC_010322.1 PFAM: UspA domain protein; KEGG: eba:ebA222 universal stress protein; UspA domain-containing protein 3546077 5870956 PputGB1_3171 Pseudomonas putida GB-1 UspA domain-containing protein YP_001669399.1 3545202 D 76869 CDS YP_001669400.1 167034169 5870957 complement(3546163..3546534) 1 NC_010322.1 hypothetical protein 3546534 5870957 PputGB1_3172 Pseudomonas putida GB-1 hypothetical protein YP_001669400.1 3546163 R 76869 CDS YP_001669401.1 167034170 5870958 complement(3546531..3546770) 1 NC_010322.1 KEGG: kpn:KPN_04766 hypothetical protein; hypothetical protein 3546770 5870958 PputGB1_3173 Pseudomonas putida GB-1 hypothetical protein YP_001669401.1 3546531 R 76869 CDS YP_001669402.1 167034171 5870959 complement(3546763..3547674) 1 NC_010322.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: ter:Tery_3032 cupin 4; cupin 4 family protein 3547674 5870959 PputGB1_3174 Pseudomonas putida GB-1 cupin 4 family protein YP_001669402.1 3546763 R 76869 CDS YP_001669403.1 167034172 5870960 complement(3547684..3549339) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0453 probable composite transport ATP-binding permase protein; ABC transporter-like protein 3549339 5870960 PputGB1_3175 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669403.1 3547684 R 76869 CDS YP_001669404.1 167034173 5870961 complement(3549391..3550098) 1 NC_010322.1 KEGG: lpc:LPC_2246 hypothetical protein; hypothetical protein 3550098 5870961 PputGB1_3176 Pseudomonas putida GB-1 hypothetical protein YP_001669404.1 3549391 R 76869 CDS YP_001669405.1 167034174 5870962 complement(3550330..3550923) 1 NC_010322.1 KEGG: pst:PSPTO_2852 hypothetical protein; hypothetical protein 3550923 5870962 PputGB1_3177 Pseudomonas putida GB-1 hypothetical protein YP_001669405.1 3550330 R 76869 CDS YP_001669406.1 167034175 5870963 complement(3551207..3551605) 1 NC_010322.1 KEGG: pst:PSPTO_2843 hypothetical protein; hypothetical protein 3551605 5870963 PputGB1_3178 Pseudomonas putida GB-1 hypothetical protein YP_001669406.1 3551207 R 76869 CDS YP_001669407.1 167034176 5870964 3551737..3552423 1 NC_010322.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pfo:Pfl_3562 transcriptional regulator, TetR family; TetR family transcriptional regulator 3552423 5870964 PputGB1_3179 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669407.1 3551737 D 76869 CDS YP_001669408.1 167034177 5870965 complement(3552725..3553201) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: zmo:ZMO0023 transcriptional regulator; AsnC family transcriptional regulator 3553201 5870965 PputGB1_3180 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001669408.1 3552725 R 76869 CDS YP_001669409.1 167034178 5870966 3553309..3554154 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: sal:Sala_1861 protein of unknown function DUF6, transmembrane; hypothetical protein 3554154 5870966 PputGB1_3181 Pseudomonas putida GB-1 hypothetical protein YP_001669409.1 3553309 D 76869 CDS YP_001669410.1 167034179 5870967 3554296..3555537 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2622 transporter, MFS family; major facilitator superfamily transporter 3555537 5870967 PputGB1_3182 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669410.1 3554296 D 76869 CDS YP_001669411.1 167034180 5870968 complement(3555553..3558267) 1 NC_010322.1 KEGG: pen:PSEEN5381 P-type ATPase, Mg2+ ATPase transporter; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase 3558267 5870968 PputGB1_3183 Pseudomonas putida GB-1 magnesium-translocating P-type ATPase YP_001669411.1 3555553 R 76869 CDS YP_001669412.1 167034181 5870969 complement(3559012..3560637) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: psa:PST_1890 probable chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3560637 5870969 PputGB1_3184 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001669412.1 3559012 R 76869 CDS YP_001669413.1 167034182 5870970 complement(3560778..3561668) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_2230 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold family protein 3561668 5870970 PputGB1_3185 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669413.1 3560778 R 76869 CDS YP_001669414.1 167034183 5870971 3561896..3563140 1 NC_010322.1 KEGG: psp:PSPPH_1225 hypothetical protein; hypothetical protein 3563140 5870971 PputGB1_3186 Pseudomonas putida GB-1 hypothetical protein YP_001669414.1 3561896 D 76869 CDS YP_001669415.1 167034184 5870972 complement(3563106..3564569) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A4302 transcriptional regulator, GntR family; transcriptional regulator 3564569 5870972 PputGB1_3187 Pseudomonas putida GB-1 transcriptional regulator YP_001669415.1 3563106 R 76869 CDS YP_001669416.1 167034185 5870973 3564651..3566417 1 NC_010322.1 PFAM: peptidase M24; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vei:Veis_3512 hypothetical protein; ferredoxin 3566417 5870973 PputGB1_3188 Pseudomonas putida GB-1 ferredoxin YP_001669416.1 3564651 D 76869 CDS YP_001669417.1 167034186 5870974 3566616..3568310 1 NC_010322.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: noc:Noc_0564 hypothetical protein; hypothetical protein 3568310 5870974 PputGB1_3189 Pseudomonas putida GB-1 hypothetical protein YP_001669417.1 3566616 D 76869 CDS YP_001669418.1 167034187 5870975 3568342..3568878 1 NC_010322.1 hypothetical protein 3568878 5870975 PputGB1_3190 Pseudomonas putida GB-1 hypothetical protein YP_001669418.1 3568342 D 76869 CDS YP_001669419.1 167034188 5870976 complement(3568955..3569524) 1 NC_010322.1 PFAM: dihydrodipicolinate synthetase; KEGG: spe:Spro_2222 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 3569524 5870976 PputGB1_3191 Pseudomonas putida GB-1 dihydrodipicolinate synthetase YP_001669419.1 3568955 R 76869 CDS YP_001669420.1 167034189 5870977 complement(3569581..3571494) 1 NC_010322.1 KEGG: mxa:MXAN_4340 hypothetical protein; hypothetical protein 3571494 5870977 PputGB1_3192 Pseudomonas putida GB-1 hypothetical protein YP_001669420.1 3569581 R 76869 CDS YP_001669421.1 167034190 5870978 complement(3571651..3572520) 1 NC_010322.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: pfl:PFL_3321 dihydrodipicolinate synthase; dihydrodipicolinate synthase 3572520 5870978 PputGB1_3193 Pseudomonas putida GB-1 dihydrodipicolinate synthase YP_001669421.1 3571651 R 76869 CDS YP_001669422.1 167034191 5870979 complement(3572830..3576390) 1 NC_010322.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3576390 5870979 PputGB1_3194 Pseudomonas putida GB-1 cellulose synthase subunit BcsC YP_001669422.1 3572830 R 76869 CDS YP_001669423.1 167034192 5870980 complement(3576378..3577493) 1 NC_010322.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3577493 5870980 PputGB1_3195 Pseudomonas putida GB-1 endo-1,4-D-glucanase YP_001669423.1 3576378 R 76869 CDS YP_001669424.1 167034193 5870981 complement(3577493..3579778) 1 NC_010322.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3579778 5870981 PputGB1_3196 Pseudomonas putida GB-1 cellulose synthase regulator protein YP_001669424.1 3577493 R 76869 CDS YP_001669425.1 167034194 5870982 complement(3579778..3582387) 1 NC_010322.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3582387 bcsA 5870982 bcsA Pseudomonas putida GB-1 cellulose synthase catalytic subunit YP_001669425.1 3579778 R 76869 CDS YP_001669426.1 167034195 5870983 complement(3582384..3583091) 1 NC_010322.1 KEGG: psa:PST_0282 cellulose synthase, putative; cellulose synthase 3583091 5870983 PputGB1_3198 Pseudomonas putida GB-1 cellulose synthase YP_001669426.1 3582384 R 76869 CDS YP_001669427.1 167034196 5870984 complement(3583088..3583306) 1 NC_010322.1 hypothetical protein 3583306 5870984 PputGB1_3199 Pseudomonas putida GB-1 hypothetical protein YP_001669427.1 3583088 R 76869 CDS YP_001669428.1 167034197 5870985 complement(3583303..3584916) 1 NC_010322.1 KEGG: psa:PST_0283 hypothetical protein; hypothetical protein 3584916 5870985 PputGB1_3200 Pseudomonas putida GB-1 hypothetical protein YP_001669428.1 3583303 R 76869 CDS YP_001669429.1 167034198 5870986 complement(3584909..3585094) 1 NC_010322.1 hypothetical protein 3585094 5870986 PputGB1_3201 Pseudomonas putida GB-1 hypothetical protein YP_001669429.1 3584909 R 76869 CDS YP_001669430.1 167034199 5870987 complement(3585091..3586581) 1 NC_010322.1 KEGG: psa:PST_0284 putative protease; putative protease 3586581 5870987 PputGB1_3202 Pseudomonas putida GB-1 putative protease YP_001669430.1 3585091 R 76869 CDS YP_001669431.1 167034200 5870988 3586918..3588771 1 NC_010322.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2245 ABC transporter, transmembrane region; ABC transporter-like protein 3588771 5870988 PputGB1_3203 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669431.1 3586918 D 76869 CDS YP_001669432.1 167034201 5870989 complement(3588840..3589667) 1 NC_010322.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: psp:PSPPH_2832 transcriptional regulator, IclR family; IclR family transcriptional regulator 3589667 5870989 PputGB1_3204 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001669432.1 3588840 R 76869 CDS YP_001669433.1 167034202 5870990 3589917..3590936 1 NC_010322.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pst:PSPTO_2524 ABC transporter, ATP-binding protein; ABC transporter-like protein 3590936 5870990 PputGB1_3205 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669433.1 3589917 D 76869 CDS YP_001669434.1 167034203 5870991 3590933..3591802 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2523 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3591802 5870991 PputGB1_3206 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669434.1 3590933 D 76869 CDS YP_001669435.1 167034204 5870992 3591807..3592601 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2522 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3592601 5870992 PputGB1_3207 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669435.1 3591807 D 76869 CDS YP_001669436.1 167034205 5870993 3592616..3592906 1 NC_010322.1 KEGG: psp:PSPPH_2836 Dye-L-proDH alpha; hypothetical protein 3592906 5870993 PputGB1_3208 Pseudomonas putida GB-1 hypothetical protein YP_001669436.1 3592616 D 76869 CDS YP_001669437.1 167034206 5870994 3592903..3594261 1 NC_010322.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: psb:Psyr_2331 FAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region; BFD/(2Fe-2S)-binding domain-containing protein 3594261 5870994 PputGB1_3209 Pseudomonas putida GB-1 BFD/(2Fe-2S)-binding domain-containing protein YP_001669437.1 3592903 D 76869 CDS YP_001669438.1 167034207 5870995 3594258..3595394 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pst:PSPTO_2519 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 3595394 5870995 PputGB1_3210 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001669438.1 3594258 D 76869 CDS YP_001669439.1 167034208 5870996 3595391..3596434 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: psp:PSPPH_2839 bacterial extracellular solute-binding domain protein; extracellular solute-binding protein 3596434 5870996 PputGB1_3211 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669439.1 3595391 D 76869 CDS YP_001669440.1 167034209 5870997 3596629..3597873 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 3597873 5870997 PputGB1_3212 Pseudomonas putida GB-1 outer membrane porin YP_001669440.1 3596629 D 76869 CDS YP_001669441.1 167034210 5870998 complement(3597930..3598670) 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: bpt:Bpet3845 Put. aldolase, class II; hypothetical protein 3598670 5870998 PputGB1_3213 Pseudomonas putida GB-1 hypothetical protein YP_001669441.1 3597930 R 76869 CDS YP_001669442.1 167034211 5870999 complement(3598684..3600006) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator superfamily transporter 3600006 5870999 PputGB1_3214 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669442.1 3598684 R 76869 CDS YP_001669443.1 167034212 5871000 3600287..3600961 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: oan:Oant_4590 transcriptional regulator, GntR family; GntR family transcriptional regulator 3600961 5871000 PputGB1_3215 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001669443.1 3600287 D 76869 CDS YP_001669444.1 167034213 5871001 complement(3601013..3601783) 1 NC_010322.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpn:KPN_00388 bacterial regulatory proteins, IclR; IclR family transcriptional regulator 3601783 5871001 PputGB1_3216 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001669444.1 3601013 R 76869 CDS YP_001669445.1 167034214 5871002 3601939..3602748 1 NC_010322.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bxe:Bxe_C0879 shikimate 5-dehydrogenase; shikimate dehydrogenase 3602748 5871002 PputGB1_3217 Pseudomonas putida GB-1 shikimate dehydrogenase YP_001669445.1 3601939 D 76869 CDS YP_001669446.1 167034215 5871003 3602753..3604486 1 NC_010322.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00386 putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3604486 5871003 PputGB1_3218 Pseudomonas putida GB-1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001669446.1 3602753 D 76869 CDS YP_001669447.1 167034216 5871004 3604471..3604791 1 NC_010322.1 PFAM: NIPSNAP family containing protein; KEGG: kpn:KPN_00385 NIPSNAP; NIPSNAP family protein 3604791 5871004 PputGB1_3219 Pseudomonas putida GB-1 NIPSNAP family protein YP_001669447.1 3604471 D 76869 CDS YP_001669448.1 167034217 5871005 3604833..3606515 1 NC_010322.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00384 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3606515 5871005 PputGB1_3220 Pseudomonas putida GB-1 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001669448.1 3604833 D 76869 CDS YP_001669449.1 167034218 5871006 complement(3606556..3610140) 1 NC_010322.1 TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein; type VI secretion protein IcmF 3610140 5871006 PputGB1_3221 Pseudomonas putida GB-1 type VI secretion protein IcmF YP_001669449.1 3606556 R 76869 CDS YP_001669450.1 167034219 5871007 complement(3610137..3611600) 1 NC_010322.1 TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: aeh:Mlg_0056 ImpA domain protein; type VI secretion-associated protein 3611600 5871007 PputGB1_3222 Pseudomonas putida GB-1 type VI secretion-associated protein YP_001669450.1 3610137 R 76869 CDS YP_001669451.1 167034220 5871008 complement(3611588..3612325) 1 NC_010322.1 KEGG: maq:Maqu_3722 hypothetical protein; hypothetical protein 3612325 5871008 PputGB1_3223 Pseudomonas putida GB-1 hypothetical protein YP_001669451.1 3611588 R 76869 CDS YP_001669452.1 167034221 5871009 3612561..3613064 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: plu:plu0372 hypothetical protein; type VI secretion protein 3613064 5871009 PputGB1_3224 Pseudomonas putida GB-1 type VI secretion protein YP_001669452.1 3612561 D 76869 CDS YP_001669453.1 167034222 5871010 3613082..3614572 1 NC_010322.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: maq:Maqu_3732 protein of unknown function DUF877; EvpB family type VI secretion protein 3614572 5871010 PputGB1_3225 Pseudomonas putida GB-1 EvpB family type VI secretion protein YP_001669453.1 3613082 D 76869 CDS YP_001669454.1 167034223 5871011 3614569..3614979 1 NC_010322.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: maq:Maqu_3731 protein of unknown function DUF1316; type VI secretion system lysozyme-like protein 3614979 5871011 PputGB1_3226 Pseudomonas putida GB-1 type VI secretion system lysozyme-like protein YP_001669454.1 3614569 D 76869 CDS YP_001669455.1 167034224 5871012 3614983..3616749 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: vco:VC0395_0028 hypothetical protein; type VI secretion protein 3616749 5871012 PputGB1_3227 Pseudomonas putida GB-1 type VI secretion protein YP_001669455.1 3614983 D 76869 CDS YP_001669456.1 167034225 5871013 3616713..3617729 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: maq:Maqu_3729 protein of unknown function DUF1305; type VI secretion protein 3617729 5871013 PputGB1_3228 Pseudomonas putida GB-1 type VI secretion protein YP_001669456.1 3616713 D 76869 CDS YP_001669457.1 167034226 5871014 3617726..3618295 1 NC_010322.1 PFAM: Forkhead-associated protein; KEGG: vco:VC0395_0026 hypothetical protein; FHA domain-containing protein 3618295 5871014 PputGB1_3229 Pseudomonas putida GB-1 FHA domain-containing protein YP_001669457.1 3617726 D 76869 CDS YP_001669458.1 167034227 5871015 3618292..3619089 1 NC_010322.1 KEGG: aeh:Mlg_0051 hypothetical protein; hypothetical protein 3619089 5871015 PputGB1_3230 Pseudomonas putida GB-1 hypothetical protein YP_001669458.1 3618292 D 76869 CDS YP_001669459.1 167034228 5871016 3619145..3620482 1 NC_010322.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein; type VI secretion protein 3620482 5871016 PputGB1_3231 Pseudomonas putida GB-1 type VI secretion protein YP_001669459.1 3619145 D 76869 CDS YP_001669460.1 167034229 5871017 3620484..3621353 1 NC_010322.1 KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein 3621353 5871017 PputGB1_3232 Pseudomonas putida GB-1 hypothetical protein YP_001669460.1 3620484 D 76869 CDS YP_001669461.1 167034230 5871018 3621473..3621988 1 NC_010322.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: maq:Maqu_0180 protein of unknown function DUF796; Hcp1 family type VI secretion system effector 3621988 5871018 PputGB1_3233 Pseudomonas putida GB-1 Hcp1 family type VI secretion system effector YP_001669461.1 3621473 D 76869 CDS YP_001669462.1 167034231 5871019 3622062..3624230 1 NC_010322.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pau:PA14_44900 hypothetical protein; ImpA family type VI secretion-associated protein 3624230 5871019 PputGB1_3234 Pseudomonas putida GB-1 ImpA family type VI secretion-associated protein YP_001669462.1 3622062 D 76869 CDS YP_001669463.1 167034232 5871020 3624227..3625159 1 NC_010322.1 hypothetical protein 3625159 5871020 PputGB1_3235 Pseudomonas putida GB-1 hypothetical protein YP_001669463.1 3624227 D 76869 CDS YP_001669464.1 167034233 5871021 3625152..3628142 1 NC_010322.1 hypothetical protein 3628142 5871021 PputGB1_3236 Pseudomonas putida GB-1 hypothetical protein YP_001669464.1 3625152 D 76869 CDS YP_001669465.1 167034234 5871022 3628145..3629035 1 NC_010322.1 hypothetical protein 3629035 5871022 PputGB1_3237 Pseudomonas putida GB-1 hypothetical protein YP_001669465.1 3628145 D 76869 CDS YP_001669466.1 167034235 5871023 3629032..3629289 1 NC_010322.1 PFAM: PAAR repeat-containing protein; KEGG: bxe:Bxe_A3019 hypothetical protein; PAAR repeat-containing protein 3629289 5871023 PputGB1_3238 Pseudomonas putida GB-1 PAAR repeat-containing protein YP_001669466.1 3629032 D 76869 CDS YP_001669467.1 167034236 5871024 3629597..3630922 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: psp:PSPPH_2104 transporter, putative; major facilitator superfamily transporter 3630922 5871024 PputGB1_3239 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669467.1 3629597 D 76869 CDS YP_001669468.1 167034237 5871025 complement(3631133..3631948) 1 NC_010322.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase domain-containing protein 3631948 5871025 PputGB1_3240 Pseudomonas putida GB-1 xylose isomerase domain-containing protein YP_001669468.1 3631133 R 76869 CDS YP_001669469.1 167034238 5871026 complement(3631979..3633031) 1 NC_010322.1 PFAM: oxidoreductase domain protein; CoA-binding domain protein; Oxidoreductase domain; KEGG: pfl:PFL_5392 oxidoreductase, putative; oxidoreductase domain-containing protein 3633031 5871026 PputGB1_3241 Pseudomonas putida GB-1 oxidoreductase domain-containing protein YP_001669469.1 3631979 R 76869 CDS YP_001669470.1 167034239 5871027 complement(3633171..3633947) 1 NC_010322.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pfl:PFL_5393 transcriptional regulator, IclR family; IclR family transcriptional regulator 3633947 5871027 PputGB1_3242 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001669470.1 3633171 R 76869 CDS YP_001669471.1 167034240 5871028 3634142..3635854 1 NC_010322.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 3635854 5871028 PputGB1_3243 Pseudomonas putida GB-1 putative FAD-binding dehydrogenase YP_001669471.1 3634142 D 76869 CDS YP_001669472.1 167034241 5871029 3636019..3637488 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: bpt:Bpet1388 benzaldehyde dehydrogenase II; aldehyde dehydrogenase 3637488 5871029 PputGB1_3244 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669472.1 3636019 D 76869 CDS YP_001669473.1 167034242 5871030 3637507..3638631 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bch:Bcen2424_6517 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3638631 5871030 PputGB1_3245 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669473.1 3637507 D 76869 CDS YP_001669474.1 167034243 5871031 3638692..3639582 1 NC_010322.1 KEGG: xau:Xaut_1344 conserved hypothetical protein; putative signal peptide; putative signal peptide 3639582 5871031 PputGB1_3246 Pseudomonas putida GB-1 putative signal peptide YP_001669474.1 3638692 D 76869 CDS YP_001669475.1 167034244 5871032 3639666..3641456 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_2976 possible transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 3641456 5871032 PputGB1_3247 Pseudomonas putida GB-1 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001669475.1 3639666 D 76869 CDS YP_001669476.1 167034245 5871033 complement(3641460..3644345) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: maq:Maqu_2105 putative metal dependent phosphohydrolase; metal dependent phosphohydrolase 3644345 5871033 PputGB1_3248 Pseudomonas putida GB-1 metal dependent phosphohydrolase YP_001669476.1 3641460 R 76869 CDS YP_001669477.1 167034246 5871034 complement(3644549..3646042) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2886 aldehyde dehydrogenase; aldehyde dehydrogenase 3646042 5871034 PputGB1_3249 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669477.1 3644549 R 76869 CDS YP_001669478.1 167034247 5871035 complement(3646149..3647531) 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN2885 aminotransferase, class III; putative aminotransferase 3647531 5871035 PputGB1_3250 Pseudomonas putida GB-1 putative aminotransferase YP_001669478.1 3646149 R 76869 CDS YP_001669479.1 167034248 5871036 complement(3647574..3648416) 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2887 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3648416 5871036 PputGB1_3251 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001669479.1 3647574 R 76869 CDS YP_001669480.1 167034249 5871037 3648698..3650092 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_0446 putrescine importer; amino acid permease-associated protein 3650092 5871037 PputGB1_3252 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001669480.1 3648698 D 76869 CDS YP_001669481.1 167034250 5871038 3650211..3651791 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pmy:Pmen_0227 aldehyde dehydrogenase; aldehyde dehydrogenase 3651791 5871038 PputGB1_3253 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669481.1 3650211 D 76869 CDS YP_001669482.1 167034251 5871039 complement(3651823..3652689) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2407 transcriptional regulator, MarR family; LysR family transcriptional regulator 3652689 5871039 PputGB1_3254 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669482.1 3651823 R 76869 CDS YP_001669483.1 167034252 5871040 3652802..3653671 1 NC_010322.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_2408 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 3653671 5871040 PputGB1_3255 Pseudomonas putida GB-1 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001669483.1 3652802 D 76869 CDS YP_001669484.1 167034253 5871041 3653668..3654468 1 NC_010322.1 KEGG: dac:Daci_2409 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase 3654468 5871041 PputGB1_3256 Pseudomonas putida GB-1 phosphonate ABC transporter ATPase YP_001669484.1 3653668 D 76869 CDS YP_001669485.1 167034254 5871042 3654465..3655283 1 NC_010322.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_3991 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter inner membrane subunit 3655283 5871042 PputGB1_3257 Pseudomonas putida GB-1 phosphonate ABC transporter inner membrane subunit YP_001669485.1 3654465 D 76869 CDS YP_001669486.1 167034255 5871043 3655369..3656574 1 NC_010322.1 TIGRFAM: phosphonate metabolism-associated iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; KEGG: vei:Veis_2143 iron-containing alcohol dehydrogenase; phosphonate metabolism-associated iron-containing alcohol dehydrogenase 3656574 5871043 PputGB1_3258 Pseudomonas putida GB-1 phosphonate metabolism-associated iron-containing alcohol dehydrogenase YP_001669486.1 3655369 D 76869 CDS YP_001669487.1 167034256 5871044 3656663..3657958 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_2142 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3657958 5871044 PputGB1_3259 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669487.1 3656663 D 76869 CDS YP_001669488.1 167034257 5871045 3658001..3658867 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_2144 transcriptional regulator, LysR family; LysR family transcriptional regulator 3658867 5871045 PputGB1_3260 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669488.1 3658001 D 76869 CDS YP_001669489.1 167034258 5871046 3658949..3659776 1 NC_010322.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3659776 5871046 PputGB1_3261 Pseudomonas putida GB-1 phosphonoacetaldehyde hydrolase YP_001669489.1 3658949 D 76869 CDS YP_001669490.1 167034259 5871047 3659982..3661355 1 NC_010322.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3661355 5871047 PputGB1_3262 Pseudomonas putida GB-1 hydroxydechloroatrazine ethylaminohydrolase YP_001669490.1 3659982 D 76869 CDS YP_001669491.1 167034260 5871048 3661478..3662983 1 NC_010322.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pmy:Pmen_0163 uracil-xanthine permease; xanthine permease 3662983 5871048 PputGB1_3263 Pseudomonas putida GB-1 xanthine permease YP_001669491.1 3661478 D 76869 CDS YP_001669492.1 167034261 5871049 complement(3663046..3663777) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_4325 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3663777 5871049 PputGB1_3264 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001669492.1 3663046 R 76869 CDS YP_001669493.1 167034262 5871050 3663900..3664673 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1302 transcriptional regulator, LysR family; LysR family transcriptional regulator 3664673 5871050 PputGB1_3265 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669493.1 3663900 D 76869 CDS YP_001669494.1 167034263 5871051 complement(3664691..3665182) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB1082 putative acetyltransferase; N-acetyltransferase GCN5 3665182 5871051 PputGB1_3266 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669494.1 3664691 R 76869 CDS YP_001669495.1 167034264 5871052 3665445..3666515 1 NC_010322.1 KEGG: kpn:KPN_02108 taurine transport protein (ABC superfamily, peri_bind); taurine ABC transporter substrate-binding protein 3666515 5871052 PputGB1_3267 Pseudomonas putida GB-1 taurine ABC transporter substrate-binding protein YP_001669495.1 3665445 D 76869 CDS YP_001669496.1 167034265 5871053 3666496..3667491 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_02107 ABC-type transport system, permease component; binding-protein-dependent transport system inner membrane protein 3667491 5871053 PputGB1_3268 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669496.1 3666496 D 76869 CDS YP_001669497.1 167034266 5871054 3667485..3668276 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2221 ABC transporter-related protein; ABC transporter-like protein 3668276 5871054 PputGB1_3269 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669497.1 3667485 D 76869 CDS YP_001669498.1 167034267 5871055 3668351..3668944 1 NC_010322.1 PFAM: Haem oxygenase; KEGG: mmw:Mmwyl1_0316 haem oxygenase; heme oxygenase 3668944 5871055 PputGB1_3270 Pseudomonas putida GB-1 heme oxygenase YP_001669498.1 3668351 D 76869 CDS YP_001669499.1 167034268 5871056 complement(3668976..3669983) 1 NC_010322.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bbr:BB1239 cytochrome oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3669983 5871056 PputGB1_3271 Pseudomonas putida GB-1 cytochrome d ubiquinol oxidase subunit II YP_001669499.1 3668976 R 76869 CDS YP_001669500.1 167034269 5871057 complement(3669998..3671419) 1 NC_010322.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I 3671419 5871057 PputGB1_3272 Pseudomonas putida GB-1 cytochrome bd ubiquinol oxidase subunit I YP_001669500.1 3669998 R 76869 CDS YP_001669501.1 167034270 5871058 complement(3671422..3671898) 1 NC_010322.1 KEGG: bam:Bamb_2523 uncharacterised conserved protein UCP030820; hypothetical protein 3671898 5871058 PputGB1_3273 Pseudomonas putida GB-1 hypothetical protein YP_001669501.1 3671422 R 76869 CDS YP_001669502.1 167034271 5871059 complement(3671888..3673897) 1 NC_010322.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: gdi:GDI3239 putative sulfite reductase; sulfite reductase (ferredoxin) 3673897 5871059 PputGB1_3274 Pseudomonas putida GB-1 sulfite reductase (ferredoxin) YP_001669502.1 3671888 R 76869 CDS YP_001669503.1 167034272 5871060 3674066..3675472 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rme:Rmet_4954 transcriptional regulator, GntR family; transcriptional regulator 3675472 5871060 PputGB1_3275 Pseudomonas putida GB-1 transcriptional regulator YP_001669503.1 3674066 D 76869 CDS YP_001669504.1 167034273 5871061 3675634..3676008 1 NC_010322.1 KEGG: pen:PSEEN3302 hypothetical protein; hypothetical protein 3676008 5871061 PputGB1_3276 Pseudomonas putida GB-1 hypothetical protein YP_001669504.1 3675634 D 76869 CDS YP_001669505.1 167034274 5871062 complement(3676072..3676227) 1 NC_010322.1 KEGG: psb:Psyr_1178 hypothetical protein; hypothetical protein 3676227 5871062 PputGB1_3277 Pseudomonas putida GB-1 hypothetical protein YP_001669505.1 3676072 R 76869 CDS YP_001669506.1 167034275 5871063 complement(3676224..3677429) 1 NC_010322.1 PFAM: aminotransferase class I and II; KEGG: pfo:Pfl_1713 aminotransferase, class I and II; GntR family transcriptional regulator 3677429 5871063 PputGB1_3278 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001669506.1 3676224 R 76869 CDS YP_001669507.1 167034276 5871064 3677512..3677958 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pfo:Pfl_1712 transcriptional regulator, MarR family; MarR family transcriptional regulator 3677958 5871064 PputGB1_3279 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001669507.1 3677512 D 76869 CDS YP_001669508.1 167034277 5871065 complement(3678013..3680421) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 3680421 5871065 PputGB1_3280 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669508.1 3678013 R 76869 CDS YP_001669509.1 167034278 5871066 complement(3680525..3681448) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 3681448 5871066 PputGB1_3281 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669509.1 3680525 R 76869 CDS YP_001669510.1 167034279 5871067 complement(3681445..3681960) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3681960 5871067 PputGB1_3282 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669510.1 3681445 R 76869 CDS YP_001669511.1 167034280 5871068 3682153..3683931 1 NC_010322.1 PFAM: sulfatase; KEGG: pen:PSEEN4076 transmembrane sulphatase; hypothetical protein 3683931 5871068 PputGB1_3283 Pseudomonas putida GB-1 hypothetical protein YP_001669511.1 3682153 D 76869 CDS YP_001669512.1 167034281 5871069 3684100..3684768 1 NC_010322.1 PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: bbr:BB2384 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 3684768 5871069 PputGB1_3284 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669512.1 3684100 D 76869 CDS YP_001669513.1 167034282 5871070 3684779..3686284 1 NC_010322.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2480 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 3686284 5871070 PputGB1_3285 Pseudomonas putida GB-1 EmrB/QacA family drug resistance transporter YP_001669513.1 3684779 D 76869 CDS YP_001669514.1 167034283 5871071 complement(3686167..3687459) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1818 putative transporter; major facilitator superfamily transporter 3687459 5871071 PputGB1_3286 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669514.1 3686167 R 76869 CDS YP_001669515.1 167034284 5871072 complement(3687590..3688126) 1 NC_010322.1 PFAM: protein of unknown function DUF330; KEGG: pfo:Pfl_2832 protein of unknown function DUF330; hypothetical protein 3688126 5871072 PputGB1_3287 Pseudomonas putida GB-1 hypothetical protein YP_001669515.1 3687590 R 76869 CDS YP_001669516.1 167034285 5871073 complement(3688138..3689778) 1 NC_010322.1 PFAM: Mammalian cell entry related domain protein; KEGG: pfo:Pfl_2831 hypothetical protein; hypothetical protein 3689778 5871073 PputGB1_3288 Pseudomonas putida GB-1 hypothetical protein YP_001669516.1 3688138 R 76869 CDS YP_001669517.1 167034286 5871074 complement(3689762..3690406) 1 NC_010322.1 PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2440 paraquat-inducible protein A; paraquat-inducible protein A 3690406 5871074 PputGB1_3289 Pseudomonas putida GB-1 paraquat-inducible protein A YP_001669517.1 3689762 R 76869 CDS YP_001669518.1 167034287 5871075 complement(3690403..3690999) 1 NC_010322.1 PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2441 paraquat-inducible protein A; paraquat-inducible protein A 3690999 5871075 PputGB1_3290 Pseudomonas putida GB-1 paraquat-inducible protein A YP_001669518.1 3690403 R 76869 CDS YP_001669519.1 167034288 5871076 complement(3691132..3692478) 1 NC_010322.1 KEGG: sbm:Shew185_1554 hypothetical protein; hypothetical protein 3692478 5871076 PputGB1_3291 Pseudomonas putida GB-1 hypothetical protein YP_001669519.1 3691132 R 76869 CDS YP_001669520.1 167034289 5871077 3692907..3693380 1 NC_010322.1 KEGG: pfo:Pfl_2136 hypothetical protein; hypothetical protein 3693380 5871077 PputGB1_3292 Pseudomonas putida GB-1 hypothetical protein YP_001669520.1 3692907 D 76869 CDS YP_001669521.1 167034290 5871078 complement(3693429..3694370) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2103 transcriptional regulator, LysR family; LysR family transcriptional regulator 3694370 5871078 PputGB1_3293 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669521.1 3693429 R 76869 CDS YP_001669522.1 167034291 5871079 3694831..3695217 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3695217 5871079 PputGB1_3294 Pseudomonas putida GB-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001669522.1 3694831 D 76869 CDS YP_001669523.1 167034292 5871080 3695254..3695823 1 NC_010322.1 KEGG: pen:PSEEN3006 hypothetical protein; hypothetical protein 3695823 5871080 PputGB1_3295 Pseudomonas putida GB-1 hypothetical protein YP_001669523.1 3695254 D 76869 CDS YP_001669524.1 167034293 5871081 complement(3695887..3697566) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3007 metabolite MFS transporter, MHS family; major facilitator superfamily transporter 3697566 5871081 PputGB1_3296 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669524.1 3695887 R 76869 CDS YP_001669525.1 167034294 5871082 3697761..3698447 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_55240 hypothetical protein; AraC family transcriptional regulator 3698447 5871082 PputGB1_3297 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669525.1 3697761 D 76869 CDS YP_001669526.1 167034295 5871083 complement(3698430..3699311) 1 NC_010322.1 PFAM: fatty acid hydroxylase; KEGG: pau:PA14_55230 hypothetical protein; fatty acid hydroxylase 3699311 5871083 PputGB1_3298 Pseudomonas putida GB-1 fatty acid hydroxylase YP_001669526.1 3698430 R 76869 CDS YP_001669527.1 167034296 5871084 complement(3699430..3700209) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3008 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 3700209 5871084 PputGB1_3299 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669527.1 3699430 R 76869 CDS YP_001669528.1 167034297 5871085 complement(3700206..3700625) 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2571 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3700625 5871085 PputGB1_3300 Pseudomonas putida GB-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001669528.1 3700206 R 76869 CDS YP_001669529.1 167034298 5871086 complement(3700701..3701627) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2459 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3701627 5871086 PputGB1_3301 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669529.1 3700701 R 76869 CDS YP_001669530.1 167034299 5871087 3701819..3706288 1 NC_010322.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3009 hypothetical protein; hypothetical protein 3706288 5871087 PputGB1_3302 Pseudomonas putida GB-1 hypothetical protein YP_001669530.1 3701819 D 76869 CDS YP_001669531.1 167034300 5871088 complement(3706293..3708737) 1 NC_010322.1 PFAM: UvrD/REP helicase; KEGG: pen:PSEEN3010 helicase; UvrD/REP family; UvrD/REP helicase 3708737 5871088 PputGB1_3303 Pseudomonas putida GB-1 UvrD/REP helicase YP_001669531.1 3706293 R 76869 CDS YP_001669532.1 167034301 5871089 3708924..3709622 1 NC_010322.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN3011 hypothetical protein; pirin domain-containing protein 3709622 5871089 PputGB1_3304 Pseudomonas putida GB-1 pirin domain-containing protein YP_001669532.1 3708924 D 76869 CDS YP_001669533.1 167034302 5871090 complement(3709775..3710674) 1 NC_010322.1 KEGG: bur:Bcep18194_B3157 MetA-pathway phenol degradation-like protein; MetA-pathway phenol degradation-like protein 3710674 5871090 PputGB1_3305 Pseudomonas putida GB-1 MetA-pathway phenol degradation-like protein YP_001669533.1 3709775 R 76869 CDS YP_001669534.1 167034303 5871091 complement(3710751..3711812) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: azo:azo2439 probable phenol hydroxylase, subunit P5; oxidoreductase FAD-binding subunit 3711812 5871091 PputGB1_3306 Pseudomonas putida GB-1 oxidoreductase FAD-binding subunit YP_001669534.1 3710751 R 76869 CDS YP_001669535.1 167034304 5871092 complement(3711824..3712183) 1 NC_010322.1 PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1783 phenol hydroxylase conserved region; phenol hydroxylase region 3712183 5871092 PputGB1_3307 Pseudomonas putida GB-1 phenol hydroxylase region YP_001669535.1 3711824 R 76869 CDS YP_001669536.1 167034305 5871093 complement(3712249..3713763) 1 NC_010322.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: azo:azo2441 probable phenol hydroxylase, subunit P3; methane/phenol/toluene hydroxylase 3713763 5871093 PputGB1_3308 Pseudomonas putida GB-1 methane/phenol/toluene hydroxylase YP_001669536.1 3712249 R 76869 CDS YP_001669537.1 167034306 5871094 complement(3713796..3714065) 1 NC_010322.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: rme:Rmet_1785 monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM 3714065 5871094 PputGB1_3309 Pseudomonas putida GB-1 monooxygenase component MmoB/DmpM YP_001669537.1 3713796 R 76869 CDS YP_001669538.1 167034307 5871095 complement(3714062..3715057) 1 NC_010322.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: mpt:Mpe_A3308 phenol hydrolase beta subunit; phenol 2-monooxygenase 3715057 5871095 PputGB1_3310 Pseudomonas putida GB-1 phenol 2-monooxygenase YP_001669538.1 3714062 R 76869 CDS YP_001669539.1 167034308 5871096 complement(3715113..3715370) 1 NC_010322.1 PFAM: Phenol hydroxylase subunit; KEGG: mpt:Mpe_A3309 phenol hydrolase assembly protein; phenol hydroxylase subunit 3715370 5871096 PputGB1_3311 Pseudomonas putida GB-1 phenol hydroxylase subunit YP_001669539.1 3715113 R 76869 CDS YP_001669540.1 167034309 5871097 3715746..3717434 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3204 transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 3717434 5871097 PputGB1_3312 Pseudomonas putida GB-1 putative sigma-54 specific transcriptional regulator YP_001669540.1 3715746 D 76869 CDS YP_001669541.1 167034310 5871098 3717602..3718507 1 NC_010322.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 3718507 5871098 PputGB1_3313 Pseudomonas putida GB-1 catechol 1,2-dioxygenase YP_001669541.1 3717602 D 76869 CDS YP_001669542.1 167034311 5871099 3718757..3721528 1 NC_010322.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3301 non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein 3721528 5871099 PputGB1_3314 Pseudomonas putida GB-1 amino acid adenylation domain-containing protein YP_001669542.1 3718757 D 76869 CDS YP_001669543.1 167034312 5871100 3721626..3722156 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_1213 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3722156 5871100 PputGB1_3315 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669543.1 3721626 D 76869 CDS YP_001669544.1 167034313 5871101 3722153..3723106 1 NC_010322.1 PFAM: FecR protein; KEGG: psa:PST_4175 probable transmembrane sensor; anti-FecI sigma factor FecR 3723106 5871101 PputGB1_3316 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669544.1 3722153 D 76869 CDS YP_001669545.1 167034314 5871102 3723191..3725641 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 3725641 5871102 PputGB1_3317 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669545.1 3723191 D 76869 CDS YP_001669546.1 167034315 5871103 complement(3725677..3726717) 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pae:PA1186 hypothetical protein; luciferase family protein 3726717 5871103 PputGB1_3318 Pseudomonas putida GB-1 luciferase family protein YP_001669546.1 3725677 R 76869 CDS YP_001669547.1 167034316 5871104 3726847..3727737 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_4195 probable transcriptional regulator; LysR family transcriptional regulator 3727737 5871104 PputGB1_3319 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669547.1 3726847 D 76869 CDS YP_001669548.1 167034317 5871105 complement(3727760..3729610) 1 NC_010322.1 KEGG: bxe:Bxe_A4359 hypothetical protein; hypothetical protein 3729610 5871105 PputGB1_3320 Pseudomonas putida GB-1 hypothetical protein YP_001669548.1 3727760 R 76869 CDS YP_001669549.1 167034318 5871106 complement(3729690..3730175) 1 NC_010322.1 KEGG: pen:PSEEN3260 hypothetical protein; hypothetical protein 3730175 5871106 PputGB1_3321 Pseudomonas putida GB-1 hypothetical protein YP_001669549.1 3729690 R 76869 CDS YP_001669550.1 167034319 5871107 complement(3730234..3732720) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: atu:Atu5311 TonB-dependent receptor; TonB-dependent siderophore receptor 3732720 5871107 PputGB1_3322 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669550.1 3730234 R 76869 CDS YP_001669551.1 167034320 5871108 complement(3732835..3733782) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 3733782 5871108 PputGB1_3323 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669551.1 3732835 R 76869 CDS YP_001669552.1 167034321 5871109 complement(3733786..3734295) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3734295 5871109 PputGB1_3324 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669552.1 3733786 R 76869 CDS YP_001669553.1 167034322 5871110 3734467..3734985 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_1233 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3734985 5871110 PputGB1_3325 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669553.1 3734467 D 76869 CDS YP_001669554.1 167034323 5871111 3734982..3735953 1 NC_010322.1 PFAM: FecR protein; KEGG: mms:mma_1214 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 3735953 5871111 PputGB1_3326 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669554.1 3734982 D 76869 CDS YP_001669555.1 167034324 5871112 3736052..3738451 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA; TonB-dependent siderophore receptor 3738451 5871112 PputGB1_3327 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669555.1 3736052 D 76869 CDS YP_001669556.1 167034325 5871113 complement(3738524..3739582) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN3417 sigma-54 dependent transcriptional regulator; response regulator receiver protein 3739582 5871113 PputGB1_3328 Pseudomonas putida GB-1 response regulator receiver protein YP_001669556.1 3738524 R 76869 CDS YP_001669557.1 167034326 5871114 3739877..3740950 1 NC_010322.1 KEGG: pen:PSEEN3419 ABC transporter, periplasmic sulfonate-binding protein; ABC transporter periplasmic sulfonate-binding protein 3740950 5871114 PputGB1_3329 Pseudomonas putida GB-1 ABC transporter periplasmic sulfonate-binding protein YP_001669557.1 3739877 D 76869 CDS YP_001669558.1 167034327 5871115 3740962..3742185 1 NC_010322.1 PFAM: secretory lipase; KEGG: pen:PSEEN3420 hypothetical protein; secretory lipase 3742185 5871115 PputGB1_3330 Pseudomonas putida GB-1 secretory lipase YP_001669558.1 3740962 D 76869 CDS YP_001669559.1 167034328 5871116 3742198..3743397 1 NC_010322.1 KEGG: pfl:PFL_2922 monooxygenase, SsuD family; alkanesulfonate monooxygenase 3743397 5871116 PputGB1_3331 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001669559.1 3742198 D 76869 CDS YP_001669560.1 167034329 5871117 3743402..3744955 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_2921 peptide ABC transporter, periplasmic peptide-binding protein, putative; extracellular solute-binding protein 3744955 5871117 PputGB1_3332 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669560.1 3743402 D 76869 CDS YP_001669561.1 167034330 5871118 3745183..3747759 1 NC_010322.1 PFAM: TonB-dependent receptor plug; KEGG: pfl:PFL_2919 TonB-dependent receptor, putative; TonB-dependent receptor plug 3747759 5871118 PputGB1_3333 Pseudomonas putida GB-1 TonB-dependent receptor plug YP_001669561.1 3745183 D 76869 CDS YP_001669562.1 167034331 5871119 3747787..3748875 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pfl:PFL_2918 monooxygenase, SsuD family; alkanesulfonate monooxygenase 3748875 5871119 PputGB1_3334 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001669562.1 3747787 D 76869 CDS YP_001669563.1 167034332 5871120 complement(3749008..3750792) 1 NC_010322.1 KEGG: pfl:PFL_3161 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 3750792 5871120 PputGB1_3335 Pseudomonas putida GB-1 oligopeptide/dipeptide ABC transporter ATPase YP_001669563.1 3749008 R 76869 CDS YP_001669564.1 167034333 5871121 complement(3750789..3751616) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3162 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3751616 5871121 PputGB1_3336 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669564.1 3750789 R 76869 CDS YP_001669565.1 167034334 5871122 complement(3751609..3752685) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3163 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3752685 5871122 PputGB1_3337 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669565.1 3751609 R 76869 CDS YP_001669566.1 167034335 5871123 complement(3752678..3754252) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_3164 peptide ABC transporter, periplasmic peptide-binding protein, putative; extracellular solute-binding protein 3754252 5871123 PputGB1_3338 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669566.1 3752678 R 76869 CDS YP_001669567.1 167034336 5871124 complement(3754263..3755450) 1 NC_010322.1 KEGG: pfl:PFL_3165 monooxygenase, SsuD family; alkanesulfonate monooxygenase 3755450 5871124 PputGB1_3339 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001669567.1 3754263 R 76869 CDS YP_001669568.1 167034337 5871125 complement(3755524..3756255) 1 NC_010322.1 PFAM: class II aldolase/adducin family protein; KEGG: pen:PSEEN3423 hypothetical protein; class II aldolase/adducin family protein 3756255 5871125 PputGB1_3340 Pseudomonas putida GB-1 class II aldolase/adducin family protein YP_001669568.1 3755524 R 76869 CDS YP_001669569.1 167034338 5871126 complement(3756274..3757335) 1 NC_010322.1 KEGG: pen:PSEEN3424 hypothetical protein; hypothetical protein 3757335 5871126 PputGB1_3341 Pseudomonas putida GB-1 hypothetical protein YP_001669569.1 3756274 R 76869 CDS YP_001669570.1 167034339 5871127 3757626..3758858 1 NC_010322.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3425 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 3758858 5871127 PputGB1_3342 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001669570.1 3757626 D 76869 CDS YP_001669571.1 167034340 5871128 3758951..3760726 1 NC_010322.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3426 ABC transporter; ATP-binding and memebrane protein; ABC transporter-like protein 3760726 5871128 PputGB1_3343 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669571.1 3758951 D 76869 CDS YP_001669572.1 167034341 5871129 3760719..3762566 1 NC_010322.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3427 ABC transporter, ATP-binding and membrane protein; ABC transporter-like protein 3762566 5871129 PputGB1_3344 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669572.1 3760719 D 76869 CDS YP_001669573.1 167034342 5871130 3762867..3764015 1 NC_010322.1 PFAM: luciferase family protein; KEGG: pen:PSEEN3428 FMNH2-dependent alkanesulfonate monooxygenase; alkanesulfonate monooxygenase 3764015 5871130 PputGB1_3345 Pseudomonas putida GB-1 alkanesulfonate monooxygenase YP_001669573.1 3762867 D 76869 CDS YP_001669574.1 167034343 5871131 3764035..3765099 1 NC_010322.1 KEGG: pen:PSEEN3429 hypothetical protein; hypothetical protein 3765099 5871131 PputGB1_3346 Pseudomonas putida GB-1 hypothetical protein YP_001669574.1 3764035 D 76869 CDS YP_001669575.1 167034344 5871132 3765096..3766154 1 NC_010322.1 KEGG: pen:PSEEN3430 hypothetical protein; hypothetical protein 3766154 5871132 PputGB1_3347 Pseudomonas putida GB-1 hypothetical protein YP_001669575.1 3765096 D 76869 CDS YP_001669576.1 167034345 5871133 3766359..3768602 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3436 TonB-dependent siderophore receptor; TonB-dependent receptor 3768602 5871133 PputGB1_3348 Pseudomonas putida GB-1 TonB-dependent receptor YP_001669576.1 3766359 D 76869 CDS YP_001669577.1 167034346 5871134 3768720..3771167 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3437 TonB-dependent siderophore receptor; TonB-dependent receptor 3771167 5871134 PputGB1_3349 Pseudomonas putida GB-1 TonB-dependent receptor YP_001669577.1 3768720 D 76869 CDS YP_001669578.1 167034347 5871135 3771365..3772117 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3438 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3772117 5871135 PputGB1_3350 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669578.1 3771365 D 76869 CDS YP_001669579.1 167034348 5871136 3772128..3772883 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3439 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3772883 5871136 PputGB1_3351 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669579.1 3772128 D 76869 CDS YP_001669580.1 167034349 5871137 3772895..3773680 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3440 ABC transporter, ATP-binding protein; ABC transporter-like protein 3773680 5871137 PputGB1_3352 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669580.1 3772895 D 76869 CDS YP_001669581.1 167034350 5871138 complement(3773739..3784565) 1 NC_010322.1 PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; KEGG: mes:Meso_0791 animal haem peroxidase; heme peroxidase 3784565 5871138 PputGB1_3353 Pseudomonas putida GB-1 heme peroxidase YP_001669581.1 3773739 R 76869 CDS YP_001669582.1 167034351 5871139 3785111..3786847 1 NC_010322.1 KEGG: nmu:Nmul_A1280 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 3786847 5871139 PputGB1_3354 Pseudomonas putida GB-1 type I secretion system ATPase YP_001669582.1 3785111 D 76869 CDS YP_001669583.1 167034352 5871140 3786854..3788194 1 NC_010322.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: nmu:Nmul_A1281 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 3788194 5871140 PputGB1_3355 Pseudomonas putida GB-1 HlyD family type I secretion membrane fusion protein YP_001669583.1 3786854 D 76869 CDS YP_001669584.1 167034353 5871141 3788196..3789524 1 NC_010322.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_5374 ABC transporter, permease protein; TolC family type I secretion outer membrane protein 3789524 5871141 PputGB1_3356 Pseudomonas putida GB-1 TolC family type I secretion outer membrane protein YP_001669584.1 3788196 D 76869 CDS YP_001669585.1 167034354 5871142 3789598..3790461 1 NC_010322.1 KEGG: pen:PSEEN3270 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3790461 5871142 PputGB1_3357 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase YP_001669585.1 3789598 D 76869 CDS YP_001669586.1 167034355 5871143 complement(3790495..3792921) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reu:Reut_B3686 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3792921 5871143 PputGB1_3358 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669586.1 3790495 R 76869 CDS YP_001669587.1 167034356 5871144 complement(3793030..3794013) 1 NC_010322.1 PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor; anti-FecI sigma factor FecR 3794013 5871144 PputGB1_3359 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001669587.1 3793030 R 76869 CDS YP_001669588.1 167034357 5871145 complement(3794014..3794526) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3271 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3794526 5871145 PputGB1_3360 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001669588.1 3794014 R 76869 CDS YP_001669589.1 167034358 5871146 3794617..3795285 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2169 hypothetical protein; type 12 methyltransferase 3795285 5871146 PputGB1_3361 Pseudomonas putida GB-1 type 12 methyltransferase YP_001669589.1 3794617 D 76869 CDS YP_001669590.1 167034359 5871147 complement(3795422..3797329) 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pen:PSEEN2014 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 3797329 5871147 PputGB1_3362 Pseudomonas putida GB-1 4-hydroxyphenylpyruvate dioxygenase YP_001669590.1 3795422 R 76869 CDS YP_001669591.1 167034360 5871148 3797618..3798991 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN2013 major facilitator family transporter; major facilitator superfamily transporter 3798991 5871148 PputGB1_3363 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669591.1 3797618 D 76869 CDS YP_001669592.1 167034361 5871149 complement(3799027..3800439) 1 NC_010322.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: pen:PSEEN2370 tyrosine decarboxylase; aromatic-L-amino-acid decarboxylase 3800439 5871149 PputGB1_3364 Pseudomonas putida GB-1 aromatic-L-amino-acid decarboxylase YP_001669592.1 3799027 R 76869 CDS YP_001669593.1 167034362 5871150 complement(3800522..3801466) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2369 transcriptional regulator, LysR family; LysR family transcriptional regulator 3801466 5871150 PputGB1_3365 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669593.1 3800522 R 76869 CDS YP_001669594.1 167034363 5871151 complement(3801604..3802317) 1 NC_010322.1 PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN2368 hypothetical protein; hypothetical protein 3802317 5871151 PputGB1_3366 Pseudomonas putida GB-1 hypothetical protein YP_001669594.1 3801604 R 76869 CDS YP_001669595.1 167034364 5871152 complement(3802415..3803806) 1 NC_010322.1 TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2401 hypothetical protein; aminophosphonate oxidoreductase 3803806 5871152 PputGB1_3367 Pseudomonas putida GB-1 aminophosphonate oxidoreductase YP_001669595.1 3802415 R 76869 CDS YP_001669596.1 167034365 5871153 complement(3803821..3805137) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2400 sugar MFS transporter; major facilitator superfamily transporter 3805137 5871153 PputGB1_3368 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669596.1 3803821 R 76869 CDS YP_001669597.1 167034366 5871154 3805381..3806277 1 NC_010322.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2399 transcriptional regulator, LysR family; LysR family transcriptional regulator 3806277 5871154 PputGB1_3369 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669597.1 3805381 D 76869 CDS YP_001669598.1 167034367 5871155 3806301..3806672 1 NC_010322.1 KEGG: pen:PSEEN2397 hypothetical protein; hypothetical protein 3806672 5871155 PputGB1_3370 Pseudomonas putida GB-1 hypothetical protein YP_001669598.1 3806301 D 76869 CDS YP_001669599.1 167034368 5871156 complement(3806662..3807438) 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2396 trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 3807438 5871156 PputGB1_3371 Pseudomonas putida GB-1 trans-aconitate 2-methyltransferase YP_001669599.1 3806662 R 76869 CDS YP_001669600.1 167034369 5871157 complement(3807575..3808966) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pfl:PFL_6228 proline-specific permease ProY; amino acid permease-associated protein 3808966 5871157 PputGB1_3372 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001669600.1 3807575 R 76869 CDS YP_001669601.1 167034370 5871158 complement(3809047..3809871) 1 NC_010322.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pfl:PFL_6227 phytanoyl-CoA dioxygenase, PhyH family; phytanoyl-CoA dioxygenase 3809871 5871158 PputGB1_3373 Pseudomonas putida GB-1 phytanoyl-CoA dioxygenase YP_001669601.1 3809047 R 76869 CDS YP_001669602.1 167034371 5871159 3810007..3810933 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A0473 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3810933 5871159 PputGB1_3374 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669602.1 3810007 D 76869 CDS YP_001669603.1 167034372 5871161 complement(3811556..3812011) 1 NC_010322.1 KEGG: bur:Bcep18194_C7498 hypothetical protein; hypothetical protein 3812011 5871161 PputGB1_3376 Pseudomonas putida GB-1 hypothetical protein YP_001669603.1 3811556 R 76869 CDS YP_001669604.1 167034373 5871162 3812441..3813271 1 NC_010322.1 hypothetical protein 3813271 5871162 PputGB1_3377 Pseudomonas putida GB-1 hypothetical protein YP_001669604.1 3812441 D 76869 CDS YP_001669605.1 167034374 5871163 complement(3813383..3813991) 1 NC_010322.1 hypothetical protein 3813991 5871163 PputGB1_3378 Pseudomonas putida GB-1 hypothetical protein YP_001669605.1 3813383 R 76869 CDS YP_001669606.1 167034375 5871164 3814170..3814709 1 NC_010322.1 hypothetical protein 3814709 5871164 PputGB1_3379 Pseudomonas putida GB-1 hypothetical protein YP_001669606.1 3814170 D 76869 CDS YP_001669607.1 167034376 5871165 3814908..3815195 1 NC_010322.1 KEGG: lpc:LPC_1833 hypothetical protein; hypothetical protein 3815195 5871165 PputGB1_3380 Pseudomonas putida GB-1 hypothetical protein YP_001669607.1 3814908 D 76869 CDS YP_001669608.1 167034377 5871166 complement(3815494..3815697) 1 NC_010322.1 hypothetical protein 3815697 5871166 PputGB1_3381 Pseudomonas putida GB-1 hypothetical protein YP_001669608.1 3815494 R 76869 CDS YP_001669609.1 167034378 5871167 complement(3815697..3815990) 1 NC_010322.1 KEGG: psp:PSPPH_4947 hypothetical protein; hypothetical protein 3815990 5871167 PputGB1_3382 Pseudomonas putida GB-1 hypothetical protein YP_001669609.1 3815697 R 76869 CDS YP_001669610.1 167034379 5871168 3816419..3817360 1 NC_010322.1 KEGG: pmy:Pmen_2248 hypothetical protein; hypothetical protein 3817360 5871168 PputGB1_3383 Pseudomonas putida GB-1 hypothetical protein YP_001669610.1 3816419 D 76869 CDS YP_001669611.1 167034380 5871169 3817353..3818723 1 NC_010322.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pen:PSEEN3029 chromate transporter; chromate transporter 3818723 5871169 PputGB1_3384 Pseudomonas putida GB-1 chromate transporter YP_001669611.1 3817353 D 76869 CDS YP_001669612.1 167034381 5871170 3819053..3819697 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0073 probable transporter transmembrane protein; lysine exporter protein LysE/YggA 3819697 5871170 PputGB1_3385 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001669612.1 3819053 D 76869 CDS YP_001669613.1 167034382 5871171 complement(3819879..3820103) 1 NC_010322.1 hypothetical protein 3820103 5871171 PputGB1_3386 Pseudomonas putida GB-1 hypothetical protein YP_001669613.1 3819879 R 76869 CDS YP_001669614.1 167034383 5871172 complement(3820146..3820679) 1 NC_010322.1 KEGG: psb:Psyr_2766 hypothetical protein; hypothetical protein 3820679 5871172 PputGB1_3387 Pseudomonas putida GB-1 hypothetical protein YP_001669614.1 3820146 R 76869 CDS YP_001669615.1 167034384 5871173 complement(3820676..3821107) 1 NC_010322.1 PFAM: glycoside hydrolase family 24; KEGG: cvi:CV_0727 probable phage-related lysozyme; lysozyme 3821107 5871173 PputGB1_3388 Pseudomonas putida GB-1 lysozyme YP_001669615.1 3820676 R 76869 CDS YP_001669616.1 167034385 5871174 complement(3821510..3821737) 1 NC_010322.1 hypothetical protein 3821737 5871174 PputGB1_3389 Pseudomonas putida GB-1 hypothetical protein YP_001669616.1 3821510 R 76869 CDS YP_001669617.1 167034386 5871175 complement(3821811..3822776) 1 NC_010322.1 KEGG: acb:A1S_2022 putative tail fiber; hypothetical protein 3822776 5871175 PputGB1_3390 Pseudomonas putida GB-1 hypothetical protein YP_001669617.1 3821811 R 76869 CDS YP_001669618.1 167034387 5871176 complement(3822786..3823841) 1 NC_010322.1 hypothetical protein 3823841 5871176 PputGB1_3391 Pseudomonas putida GB-1 hypothetical protein YP_001669618.1 3822786 R 76869 CDS YP_001669619.1 167034388 5871177 complement(3823841..3831043) 1 NC_010322.1 PFAM: Fibronectin type III domain protein; Protein of unknown function DUF1983; KEGG: pst:PSPTO_4041 host specificity protein J, internal deletion; hypothetical protein 3831043 5871177 PputGB1_3392 Pseudomonas putida GB-1 hypothetical protein YP_001669619.1 3823841 R 76869 CDS YP_001669620.1 167034389 5871178 complement(3831043..3831441) 1 NC_010322.1 KEGG: pst:PSPTO_4042 hypothetical protein; hypothetical protein 3831441 5871178 PputGB1_3393 Pseudomonas putida GB-1 hypothetical protein YP_001669620.1 3831043 R 76869 CDS YP_001669621.1 167034390 5871179 complement(3831444..3832046) 1 NC_010322.1 KEGG: pst:PSPTO_4043 hypothetical protein; hypothetical protein 3832046 5871179 PputGB1_3394 Pseudomonas putida GB-1 hypothetical protein YP_001669621.1 3831444 R 76869 CDS YP_001669622.1 167034391 5871180 complement(3832046..3832630) 1 NC_010322.1 KEGG: pst:PSPTO_4044 hypothetical protein; hypothetical protein 3832630 5871180 PputGB1_3395 Pseudomonas putida GB-1 hypothetical protein YP_001669622.1 3832046 R 76869 CDS YP_001669623.1 167034392 5871181 complement(3832647..3835373) 1 NC_010322.1 TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: pst:PSPTO_4046 tail tape meausure protein; lambda family phage tail tape measure protein 3835373 5871181 PputGB1_3396 Pseudomonas putida GB-1 lambda family phage tail tape measure protein YP_001669623.1 3832647 R 76869 CDS YP_001669624.1 167034393 5871182 complement(3835430..3835744) 1 NC_010322.1 KEGG: eba:ebA1855 hypothetical protein; hypothetical protein 3835744 5871182 PputGB1_3397 Pseudomonas putida GB-1 hypothetical protein YP_001669624.1 3835430 R 76869 CDS YP_001669625.1 167034394 5871183 complement(3836111..3836569) 1 NC_010322.1 hypothetical protein 3836569 5871183 PputGB1_3398 Pseudomonas putida GB-1 hypothetical protein YP_001669625.1 3836111 R 76869 CDS YP_001669626.1 167034395 5871184 complement(3836562..3837137) 1 NC_010322.1 KEGG: nha:Nham_3777 hypothetical protein; hypothetical protein 3837137 5871184 PputGB1_3399 Pseudomonas putida GB-1 hypothetical protein YP_001669626.1 3836562 R 76869 CDS YP_001669627.1 167034396 5871185 complement(3837134..3837988) 1 NC_010322.1 PFAM: BRO domain protein; KEGG: plu:plu2952 hypothetical protein; prophage antirepressor 3837988 5871185 PputGB1_3400 Pseudomonas putida GB-1 prophage antirepressor YP_001669627.1 3837134 R 76869 CDS YP_001669628.1 167034397 5871186 complement(3838063..3838221) 1 NC_010322.1 PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein 3838221 5871186 PputGB1_3401 Pseudomonas putida GB-1 Arc domain-containing protein YP_001669628.1 3838063 R 76869 CDS YP_001669629.1 167034398 5871187 3838336..3838743 1 NC_010322.1 PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein 3838743 5871187 PputGB1_3402 Pseudomonas putida GB-1 Arc domain-containing protein YP_001669629.1 3838336 D 76869 CDS YP_001669630.1 167034399 5871188 3838925..3839500 1 NC_010322.1 KEGG: nme:NMB1330 hypothetical protein; hypothetical protein 3839500 5871188 PputGB1_3403 Pseudomonas putida GB-1 hypothetical protein YP_001669630.1 3838925 D 76869 CDS YP_001669631.1 167034400 5871189 complement(3839642..3840247) 1 NC_010322.1 KEGG: rba:RB4084 hypothetical protein; hypothetical protein 3840247 5871189 PputGB1_3404 Pseudomonas putida GB-1 hypothetical protein YP_001669631.1 3839642 R 76869 CDS YP_001669632.1 167034401 5871190 3840443..3840736 1 NC_010322.1 KEGG: xac:XAC2177 hypothetical protein; hypothetical protein 3840736 5871190 PputGB1_3405 Pseudomonas putida GB-1 hypothetical protein YP_001669632.1 3840443 D 76869 CDS YP_001669633.1 167034402 5871191 complement(3840938..3841234) 1 NC_010322.1 PFAM: Protein of unknown function DUF1799 phage-related; KEGG: psb:Psyr_2781 hypothetical protein; hypothetical protein 3841234 5871191 PputGB1_3406 Pseudomonas putida GB-1 hypothetical protein YP_001669633.1 3840938 R 76869 CDS YP_001669634.1 167034403 5871192 complement(3841252..3841635) 1 NC_010322.1 PFAM: Domain of unknown function DUF1789; KEGG: psb:Psyr_2782 hypothetical protein; hypothetical protein 3841635 5871192 PputGB1_3407 Pseudomonas putida GB-1 hypothetical protein YP_001669634.1 3841252 R 76869 CDS YP_001669635.1 167034404 5871193 complement(3841645..3842304) 1 NC_010322.1 PFAM: tail protein 3; KEGG: psb:Psyr_2783 hypothetical protein; tail protein 3 3842304 5871193 PputGB1_3408 Pseudomonas putida GB-1 tail protein 3 YP_001669635.1 3841645 R 76869 CDS YP_001669636.1 167034405 5871194 complement(3842371..3842961) 1 NC_010322.1 hypothetical protein 3842961 5871194 PputGB1_3409 Pseudomonas putida GB-1 hypothetical protein YP_001669636.1 3842371 R 76869 CDS YP_001669637.1 167034406 5871195 complement(3843022..3843444) 1 NC_010322.1 KEGG: psb:Psyr_2784 hypothetical protein; hypothetical protein 3843444 5871195 PputGB1_3410 Pseudomonas putida GB-1 hypothetical protein YP_001669637.1 3843022 R 76869 CDS YP_001669638.1 167034407 5871196 complement(3843441..3844115) 1 NC_010322.1 KEGG: pfl:PFL_3757 hypothetical protein; hypothetical protein 3844115 5871196 PputGB1_3411 Pseudomonas putida GB-1 hypothetical protein YP_001669638.1 3843441 R 76869 CDS YP_001669639.1 167034408 5871197 complement(3844117..3844509) 1 NC_010322.1 KEGG: pst:PSPTO_2079 hypothetical protein; hypothetical protein 3844509 5871197 PputGB1_3412 Pseudomonas putida GB-1 hypothetical protein YP_001669639.1 3844117 R 76869 CDS YP_001669640.1 167034409 5871198 complement(3844512..3844904) 1 NC_010322.1 KEGG: cko:CKO_01862 hypothetical protein; hypothetical protein 3844904 5871198 PputGB1_3413 Pseudomonas putida GB-1 hypothetical protein YP_001669640.1 3844512 R 76869 CDS YP_001669641.1 167034410 5871199 complement(3844945..3845529) 1 NC_010322.1 KEGG: pfl:PFL_3760 hypothetical protein; hypothetical protein 3845529 5871199 PputGB1_3414 Pseudomonas putida GB-1 hypothetical protein YP_001669641.1 3844945 R 76869 CDS YP_001669642.1 167034411 5871200 complement(3845578..3846522) 1 NC_010322.1 KEGG: pfl:PFL_3761 hypothetical protein; hypothetical protein 3846522 5871200 PputGB1_3415 Pseudomonas putida GB-1 hypothetical protein YP_001669642.1 3845578 R 76869 CDS YP_001669643.1 167034412 5871201 complement(3846533..3847252) 1 NC_010322.1 KEGG: pfl:PFL_3762 hypothetical protein; hypothetical protein 3847252 5871201 PputGB1_3416 Pseudomonas putida GB-1 hypothetical protein YP_001669643.1 3846533 R 76869 CDS YP_001669644.1 167034413 5871202 complement(3847681..3848724) 1 NC_010322.1 TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; KEGG: psb:Psyr_2792 phage putative head morphogenesis protein, SPP1 gp7; SPP1 family phage head morphogenesis protein 3848724 5871202 PputGB1_3417 Pseudomonas putida GB-1 SPP1 family phage head morphogenesis protein YP_001669644.1 3847681 R 76869 CDS YP_001669645.1 167034414 5871203 complement(3848714..3850138) 1 NC_010322.1 KEGG: pfl:PFL_3765 hypothetical protein; hypothetical protein 3850138 5871203 PputGB1_3418 Pseudomonas putida GB-1 hypothetical protein YP_001669645.1 3848714 R 76869 CDS YP_001669646.1 167034415 5871204 complement(3850147..3851448) 1 NC_010322.1 PFAM: protein of unknown function DUF264; KEGG: pfl:PFL_3766 hypothetical protein; hypothetical protein 3851448 5871204 PputGB1_3419 Pseudomonas putida GB-1 hypothetical protein YP_001669646.1 3850147 R 76869 CDS YP_001669647.1 167034416 5871205 complement(3851435..3851896) 1 NC_010322.1 KEGG: psb:Psyr_2795 hypothetical protein; hypothetical protein 3851896 5871205 PputGB1_3420 Pseudomonas putida GB-1 hypothetical protein YP_001669647.1 3851435 R 76869 CDS YP_001669648.1 167034417 5871206 complement(3851928..3852536) 1 NC_010322.1 KEGG: pfl:PFL_3768 hypothetical protein; hypothetical protein 3852536 5871206 PputGB1_3421 Pseudomonas putida GB-1 hypothetical protein YP_001669648.1 3851928 R 76869 CDS YP_001669649.1 167034418 5871207 3852611..3852940 1 NC_010322.1 hypothetical protein 3852940 5871207 PputGB1_3422 Pseudomonas putida GB-1 hypothetical protein YP_001669649.1 3852611 D 76869 CDS YP_001669650.1 167034419 5871208 complement(3852958..3853389) 1 NC_010322.1 PFAM: 20S proteasome A and B subunits; KEGG: psb:Psyr_2798 hypothetical protein; 20S proteasome subunits A and B 3853389 5871208 PputGB1_3423 Pseudomonas putida GB-1 20S proteasome subunits A and B YP_001669650.1 3852958 R 76869 CDS YP_001669651.1 167034420 5871209 complement(3853386..3853550) 1 NC_010322.1 hypothetical protein 3853550 5871209 PputGB1_3424 Pseudomonas putida GB-1 hypothetical protein YP_001669651.1 3853386 R 76869 CDS YP_001669652.1 167034421 5871210 complement(3853601..3853864) 1 NC_010322.1 KEGG: pap:PSPA7_2402 hypothetical protein; hypothetical protein 3853864 5871210 PputGB1_3425 Pseudomonas putida GB-1 hypothetical protein YP_001669652.1 3853601 R 76869 CDS YP_001669653.1 167034422 5871211 complement(3853866..3854189) 1 NC_010322.1 KEGG: pap:PSPA7_2401 peptidase M48, Ste24p; peptidase M48, Ste24p 3854189 5871211 PputGB1_3426 Pseudomonas putida GB-1 peptidase M48, Ste24p YP_001669653.1 3853866 R 76869 CDS YP_001669654.1 167034423 5871213 complement(3854709..3855254) 1 NC_010322.1 KEGG: pfl:PFL_3772 hypothetical protein; hypothetical protein 3855254 5871213 PputGB1_3427 Pseudomonas putida GB-1 hypothetical protein YP_001669654.1 3854709 R 76869 CDS YP_001669655.1 167034424 5871214 complement(3855251..3855397) 1 NC_010322.1 hypothetical protein 3855397 5871214 PputGB1_3428 Pseudomonas putida GB-1 hypothetical protein YP_001669655.1 3855251 R 76869 CDS YP_001669656.1 167034425 5871215 complement(3855394..3855999) 1 NC_010322.1 PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein; lambda NinG family protein 3855999 5871215 PputGB1_3429 Pseudomonas putida GB-1 lambda NinG family protein YP_001669656.1 3855394 R 76869 CDS YP_001669657.1 167034426 5871216 complement(3855996..3856199) 1 NC_010322.1 hypothetical protein 3856199 5871216 PputGB1_3430 Pseudomonas putida GB-1 hypothetical protein YP_001669657.1 3855996 R 76869 CDS YP_001669658.1 167034427 5871217 complement(3856196..3856357) 1 NC_010322.1 hypothetical protein 3856357 5871217 PputGB1_3431 Pseudomonas putida GB-1 hypothetical protein YP_001669658.1 3856196 R 76869 CDS YP_001669659.1 167034428 5871218 complement(3856354..3856824) 1 NC_010322.1 hypothetical protein 3856824 5871218 PputGB1_3432 Pseudomonas putida GB-1 hypothetical protein YP_001669659.1 3856354 R 76869 CDS YP_001669660.1 167034429 5871219 complement(3856817..3857071) 1 NC_010322.1 hypothetical protein 3857071 5871219 PputGB1_3433 Pseudomonas putida GB-1 hypothetical protein YP_001669660.1 3856817 R 76869 CDS YP_001669661.1 167034430 5871220 complement(3857068..3857337) 1 NC_010322.1 hypothetical protein 3857337 5871220 PputGB1_3434 Pseudomonas putida GB-1 hypothetical protein YP_001669661.1 3857068 R 76869 CDS YP_001669662.1 167034431 5871221 complement(3857337..3857627) 1 NC_010322.1 hypothetical protein 3857627 5871221 PputGB1_3435 Pseudomonas putida GB-1 hypothetical protein YP_001669662.1 3857337 R 76869 CDS YP_001669663.1 167034432 5871222 complement(3857627..3857818) 1 NC_010322.1 hypothetical protein 3857818 5871222 PputGB1_3436 Pseudomonas putida GB-1 hypothetical protein YP_001669663.1 3857627 R 76869 CDS YP_001669664.1 167034433 5871223 complement(3857815..3858186) 1 NC_010322.1 KEGG: abo:ABO_0763 hypothetical protein; hypothetical protein 3858186 5871223 PputGB1_3437 Pseudomonas putida GB-1 hypothetical protein YP_001669664.1 3857815 R 76869 CDS YP_001669665.1 167034434 5871224 complement(3858186..3858992) 1 NC_010322.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB ATP binding domain-containing protein 3858992 5871224 PputGB1_3438 Pseudomonas putida GB-1 IstB ATP binding domain-containing protein YP_001669665.1 3858186 R 76869 CDS YP_001669666.1 167034435 5871225 complement(3858982..3859731) 1 NC_010322.1 KEGG: plu:plu3473 hypothetical protein; putative transcriptional regulator 3859731 5871225 PputGB1_3439 Pseudomonas putida GB-1 putative transcriptional regulator YP_001669666.1 3858982 R 76869 CDS YP_001669667.1 167034436 5871226 complement(3859901..3860758) 1 NC_010322.1 PFAM: BRO domain protein; KEGG: pfl:PFL_3777 hypothetical protein; prophage antirepressor 3860758 5871226 PputGB1_3440 Pseudomonas putida GB-1 prophage antirepressor YP_001669667.1 3859901 R 76869 CDS YP_001669668.1 167034437 5871227 complement(3861092..3861283) 1 NC_010322.1 hypothetical protein 3861283 5871227 PputGB1_3441 Pseudomonas putida GB-1 hypothetical protein YP_001669668.1 3861092 R 76869 CDS YP_001669669.1 167034438 5871228 complement(3861311..3861535) 1 NC_010322.1 KEGG: bbr:BB3521 phage regulatory protein; hypothetical protein 3861535 5871228 PputGB1_3442 Pseudomonas putida GB-1 hypothetical protein YP_001669669.1 3861311 R 76869 CDS YP_001669670.1 167034439 5871229 3861635..3862321 1 NC_010322.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B; XRE family transcriptional regulator 3862321 5871229 PputGB1_3443 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669670.1 3861635 D 76869 CDS YP_001669671.1 167034440 5871230 3862331..3862561 1 NC_010322.1 KEGG: psb:Psyr_2813 hypothetical protein; hypothetical protein 3862561 5871230 PputGB1_3444 Pseudomonas putida GB-1 hypothetical protein YP_001669671.1 3862331 D 76869 CDS YP_001669672.1 167034441 5871231 3863030..3863827 1 NC_010322.1 hypothetical protein 3863827 5871231 PputGB1_3445 Pseudomonas putida GB-1 hypothetical protein YP_001669672.1 3863030 D 76869 CDS YP_001669673.1 167034442 5871232 complement(3864293..3864649) 1 NC_010322.1 hypothetical protein 3864649 5871232 PputGB1_3446 Pseudomonas putida GB-1 hypothetical protein YP_001669673.1 3864293 R 76869 CDS YP_001669674.1 167034443 5871233 3864724..3864933 1 NC_010322.1 hypothetical protein 3864933 5871233 PputGB1_3447 Pseudomonas putida GB-1 hypothetical protein YP_001669674.1 3864724 D 76869 CDS YP_001669675.1 167034444 5871234 3865065..3865550 1 NC_010322.1 hypothetical protein 3865550 5871234 PputGB1_3448 Pseudomonas putida GB-1 hypothetical protein YP_001669675.1 3865065 D 76869 CDS YP_001669676.1 167034445 5871235 3865574..3865993 1 NC_010322.1 KEGG: psb:Psyr_2818 hypothetical protein; hypothetical protein 3865993 5871235 PputGB1_3449 Pseudomonas putida GB-1 hypothetical protein YP_001669676.1 3865574 D 76869 CDS YP_001669677.1 167034446 5871236 3865990..3866193 1 NC_010322.1 hypothetical protein 3866193 5871236 PputGB1_3450 Pseudomonas putida GB-1 hypothetical protein YP_001669677.1 3865990 D 76869 CDS YP_001669678.1 167034447 5871237 3866190..3866405 1 NC_010322.1 hypothetical protein 3866405 5871237 PputGB1_3451 Pseudomonas putida GB-1 hypothetical protein YP_001669678.1 3866190 D 76869 CDS YP_001669679.1 167034448 5871238 3866402..3866857 1 NC_010322.1 hypothetical protein 3866857 5871238 PputGB1_3452 Pseudomonas putida GB-1 hypothetical protein YP_001669679.1 3866402 D 76869 CDS YP_001669680.1 167034449 5871239 3866854..3866970 1 NC_010322.1 hypothetical protein 3866970 5871239 PputGB1_3453 Pseudomonas putida GB-1 hypothetical protein YP_001669680.1 3866854 D 76869 CDS YP_001669681.1 167034450 5871240 3867145..3868269 1 NC_010322.1 KEGG: xau:Xaut_3682 hypothetical protein; hypothetical protein 3868269 5871240 PputGB1_3454 Pseudomonas putida GB-1 hypothetical protein YP_001669681.1 3867145 D 76869 CDS YP_001669682.1 167034451 5871241 3868277..3869035 1 NC_010322.1 PFAM: ERF family protein; KEGG: xau:Xaut_3683 ERF family protein; ERF family protein 3869035 5871241 PputGB1_3455 Pseudomonas putida GB-1 ERF family protein YP_001669682.1 3868277 D 76869 CDS YP_001669683.1 167034452 5871242 3869039..3869656 1 NC_010322.1 PFAM: Exonuclease, phage-type; KEGG: xau:Xaut_3679 hypothetical protein; exonuclease, phage-type 3869656 5871242 PputGB1_3456 Pseudomonas putida GB-1 exonuclease, phage-type YP_001669683.1 3869039 D 76869 CDS YP_001669684.1 167034453 5871243 3869664..3870176 1 NC_010322.1 KEGG: psb:Psyr_2836 hypothetical protein; hypothetical protein 3870176 5871243 PputGB1_3457 Pseudomonas putida GB-1 hypothetical protein YP_001669684.1 3869664 D 76869 CDS YP_001669685.1 167034454 5871244 3870426..3870788 1 NC_010322.1 KEGG: psp:PSPPH_2146 hypothetical protein; hypothetical protein 3870788 5871244 PputGB1_3458 Pseudomonas putida GB-1 hypothetical protein YP_001669685.1 3870426 D 76869 CDS YP_001669686.1 167034455 5871245 complement(3870846..3871148) 1 NC_010322.1 hypothetical protein 3871148 5871245 PputGB1_3459 Pseudomonas putida GB-1 hypothetical protein YP_001669686.1 3870846 R 76869 CDS YP_001669687.1 167034456 5871246 3871230..3872318 1 NC_010322.1 hypothetical protein 3872318 5871246 PputGB1_3460 Pseudomonas putida GB-1 hypothetical protein YP_001669687.1 3871230 D 76869 CDS YP_001669688.1 167034457 5871247 3872932..3874791 1 NC_010322.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_2828 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 3874791 5871247 PputGB1_3461 Pseudomonas putida GB-1 C-5 cytosine-specific DNA methylase YP_001669688.1 3872932 D 76869 CDS YP_001669689.1 167034458 5871248 3875133..3875585 1 NC_010322.1 hypothetical protein 3875585 5871248 PputGB1_3462 Pseudomonas putida GB-1 hypothetical protein YP_001669689.1 3875133 D 76869 CDS YP_001669690.1 167034459 5871249 3875582..3875878 1 NC_010322.1 hypothetical protein 3875878 5871249 PputGB1_3463 Pseudomonas putida GB-1 hypothetical protein YP_001669690.1 3875582 D 76869 CDS YP_001669691.1 167034460 5871250 complement(3875919..3876218) 1 NC_010322.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 3876218 5871250 PputGB1_3464 Pseudomonas putida GB-1 hypothetical protein YP_001669691.1 3875919 R 76869 CDS YP_001669692.1 167034461 5871251 3876400..3876894 1 NC_010322.1 KEGG: stt:t1391 hypothetical protein; hypothetical protein 3876894 5871251 PputGB1_3465 Pseudomonas putida GB-1 hypothetical protein YP_001669692.1 3876400 D 76869 CDS YP_001669693.1 167034462 5871252 3876891..3877142 1 NC_010322.1 hypothetical protein 3877142 5871252 PputGB1_3466 Pseudomonas putida GB-1 hypothetical protein YP_001669693.1 3876891 D 76869 CDS YP_001669694.1 167034463 5871253 3877139..3877684 1 NC_010322.1 hypothetical protein 3877684 5871253 PputGB1_3467 Pseudomonas putida GB-1 hypothetical protein YP_001669694.1 3877139 D 76869 CDS YP_001669695.1 167034464 5871254 3877672..3878004 1 NC_010322.1 hypothetical protein 3878004 5871254 PputGB1_3468 Pseudomonas putida GB-1 hypothetical protein YP_001669695.1 3877672 D 76869 CDS YP_001669696.1 167034465 5871255 3878048..3878239 1 NC_010322.1 hypothetical protein 3878239 5871255 PputGB1_3469 Pseudomonas putida GB-1 hypothetical protein YP_001669696.1 3878048 D 76869 CDS YP_001669697.1 167034466 5871256 3878290..3878706 1 NC_010322.1 hypothetical protein 3878706 5871256 PputGB1_3470 Pseudomonas putida GB-1 hypothetical protein YP_001669697.1 3878290 D 76869 CDS YP_001669698.1 167034467 5871257 3878744..3879478 1 NC_010322.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; phosphoprotein phosphatase 3879478 5871257 PputGB1_3471 Pseudomonas putida GB-1 phosphoprotein phosphatase YP_001669698.1 3878744 D 76869 CDS YP_001669699.1 167034468 5871258 3879494..3879670 1 NC_010322.1 KEGG: sec:SC082 hypothetical protein; hypothetical protein 3879670 5871258 PputGB1_3472 Pseudomonas putida GB-1 hypothetical protein YP_001669699.1 3879494 D 76869 CDS YP_001669700.1 167034469 5871259 3879960..3881138 1 NC_010322.1 PFAM: integrase family protein; KEGG: lpp:lpp2312 hypothetical protein; integrase family protein 3881138 5871259 PputGB1_3473 Pseudomonas putida GB-1 integrase family protein YP_001669700.1 3879960 D 76869 CDS YP_001669701.1 167034470 5871261 complement(3881386..3881742) 1 NC_010322.1 PFAM: regulatory protein MerR; KEGG: pen:PSEEN1970 transcriptional regulator, MerR family; MerR family transcriptional regulator 3881742 5871261 PputGB1_3474 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001669701.1 3881386 R 76869 CDS YP_001669702.1 167034471 5871262 complement(3881723..3882025) 1 NC_010322.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 3882025 ihfA 5871262 ihfA Pseudomonas putida GB-1 integration host factor subunit alpha YP_001669702.1 3881723 R 76869 CDS YP_001669703.1 167034472 5871263 complement(3882030..3884411) 1 NC_010322.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 3884411 pheT 5871263 pheT Pseudomonas putida GB-1 phenylalanyl-tRNA synthetase subunit beta YP_001669703.1 3882030 R 76869 CDS YP_001669704.1 167034473 5871264 complement(3884445..3885461) 1 NC_010322.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 3885461 pheS 5871264 pheS Pseudomonas putida GB-1 phenylalanyl-tRNA synthetase subunit alpha YP_001669704.1 3884445 R 76869 CDS YP_001669705.1 167034474 5871265 complement(3885571..3885927) 1 NC_010322.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3885927 rplT 5871265 rplT Pseudomonas putida GB-1 50S ribosomal protein L20 YP_001669705.1 3885571 R 76869 CDS YP_001669706.1 167034475 5871266 complement(3885955..3886149) 1 NC_010322.1 PFAM: ribosomal protein L35; KEGG: pen:PSEEN1965 50S ribosomal subunit protein A; 50S ribosomal protein L35 3886149 rpmI 5871266 rpmI Pseudomonas putida GB-1 50S ribosomal protein L35 YP_001669706.1 3885955 R 76869 CDS YP_001669707.1 167034476 5871267 complement(3886210..3886761) 1 NC_010322.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 3886761 infC 5871267 infC Pseudomonas putida GB-1 translation initiation factor IF-3 YP_001669707.1 3886210 R 76869 CDS YP_001669708.1 167034477 5871268 complement(3886761..3888683) 1 NC_010322.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3888683 thrS 5871268 thrS Pseudomonas putida GB-1 threonyl-tRNA synthetase YP_001669708.1 3886761 R 76869 CDS YP_001669709.1 167034478 5871269 3889021..3889326 1 NC_010322.1 KEGG: pen:PSEEN1962 hypothetical protein; hypothetical protein 3889326 5871269 PputGB1_3482 Pseudomonas putida GB-1 hypothetical protein YP_001669709.1 3889021 D 76869 CDS YP_001669710.1 167034479 5871270 3889490..3889702 1 NC_010322.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pfl:PFL_2109 cold shock protein CapA, fragment-related protein; cold-shock DNA-binding domain-containing protein 3889702 5871270 PputGB1_3483 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001669710.1 3889490 D 76869 CDS YP_001669711.1 167034480 5871271 complement(3889827..3890147) 1 NC_010322.1 KEGG: pen:PSEEN1960 hypothetical protein; hypothetical protein 3890147 5871271 PputGB1_3484 Pseudomonas putida GB-1 hypothetical protein YP_001669711.1 3889827 R 76869 CDS YP_001669712.1 167034481 5871272 3890382..3890633 1 NC_010322.1 KEGG: pen:PSEEN1959 hypothetical protein; hypothetical protein 3890633 5871272 PputGB1_3485 Pseudomonas putida GB-1 hypothetical protein YP_001669712.1 3890382 D 76869 CDS YP_001669713.1 167034482 5871273 complement(3890605..3891606) 1 NC_010322.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pen:PSEEN1958 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 3891606 5871273 PputGB1_3486 Pseudomonas putida GB-1 inosine/uridine-preferring nucleoside hydrolase YP_001669713.1 3890605 R 76869 CDS YP_001669714.1 167034483 5871274 complement(3891663..3892061) 1 NC_010322.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 3892061 5871274 PputGB1_3487 Pseudomonas putida GB-1 D-ribose pyranase YP_001669714.1 3891663 R 76869 CDS YP_001669715.1 167034484 5871275 complement(3892058..3892966) 1 NC_010322.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: pen:PSEEN1956 ribokinase RbsK; ribokinase 3892966 5871275 PputGB1_3488 Pseudomonas putida GB-1 ribokinase YP_001669715.1 3892058 R 76869 CDS YP_001669716.1 167034485 5871276 complement(3892982..3894004) 1 NC_010322.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1955 ribose operon repressor RbsR; LacI family transcriptional regulator 3894004 5871276 PputGB1_3489 Pseudomonas putida GB-1 LacI family transcriptional regulator YP_001669716.1 3892982 R 76869 CDS YP_001669717.1 167034486 5871277 complement(3894009..3895004) 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN1954 ribose ABC transporter, permease protein RbsC; monosaccharide-transporting ATPase 3895004 5871277 PputGB1_3490 Pseudomonas putida GB-1 monosaccharide-transporting ATPase YP_001669717.1 3894009 R 76869 CDS YP_001669718.1 167034487 5871278 complement(3895001..3896554) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1953 ribose ABC transporter, ATP-binding protein RbsA; ABC transporter-like protein 3896554 5871278 PputGB1_3491 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669718.1 3895001 R 76869 CDS YP_001669719.1 167034488 5871279 complement(3896574..3897533) 1 NC_010322.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1952 ribose ABC transporter, periplasmic ribose-binding protein RbsB; monosaccharide-transporting ATPase 3897533 5871279 PputGB1_3492 Pseudomonas putida GB-1 monosaccharide-transporting ATPase YP_001669719.1 3896574 R 76869 CDS YP_001669720.1 167034489 5871280 3897842..3898930 1 NC_010322.1 KEGG: pen:PSEEN1951 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; type II L-asparaginase 3898930 5871280 PputGB1_3493 Pseudomonas putida GB-1 type II L-asparaginase YP_001669720.1 3897842 D 76869 CDS YP_001669721.1 167034490 5871281 complement(3899112..3899534) 1 NC_010322.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: pen:PSEEN3090 homoprotocatechuate degradative operon repressor; MarR family transcriptional regulator 3899534 5871281 PputGB1_3494 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001669721.1 3899112 R 76869 CDS YP_001669722.1 167034491 5871282 complement(3899690..3900640) 1 NC_010322.1 TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3091 4-hydroxyphenylacetate catabolism regulatory protein HpaA; AraC family transcriptional regulator 3900640 5871282 PputGB1_3495 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001669722.1 3899690 R 76869 CDS YP_001669723.1 167034492 5871283 3900767..3901426 1 NC_010322.1 KEGG: pen:PSEEN3092 4-hydroxyphenylacetate degradation; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HhdD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1 3901426 5871283 PputGB1_3496 Pseudomonas putida GB-1 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1 YP_001669723.1 3900767 D 76869 CDS YP_001669724.1 167034493 5871284 3901437..3902201 1 NC_010322.1 KEGG: pen:PSEEN3093 4-hydroxyphenylacetate degradation bifunctional; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase (5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase) (OPET decarboxylase); TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 3902201 5871284 PputGB1_3497 Pseudomonas putida GB-1 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 YP_001669724.1 3901437 D 76869 CDS YP_001669725.1 167034494 5871285 3902198..3903667 1 NC_010322.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN3094 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (CHMS dehydrogenase); 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3903667 5871285 PputGB1_3498 Pseudomonas putida GB-1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase YP_001669725.1 3902198 D 76869 CDS YP_001669726.1 167034495 5871286 3903745..3904668 1 NC_010322.1 KEGG: pen:PSEEN3095 3,4-dihydroxyphenylacetate 2,3-dioxygenase (homoprotocatechuate 2,3-dioxygenase) (HPC dioxygenase); TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 3904668 5871286 PputGB1_3499 Pseudomonas putida GB-1 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_001669726.1 3903745 D 76869 CDS YP_001669727.1 167034496 5871287 3904732..3905136 1 NC_010322.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pen:PSEEN3096 5-carboxymethyl-2-hydroxymuconate delta-isomerase (5-carboxymethyl-2-hydroxymuconic acid isomerase) (CHM isomerase) (CHMI); 5-carboxymethyl-2-hydroxymuconate isomerase 3905136 5871287 PputGB1_3500 Pseudomonas putida GB-1 5-carboxymethyl-2-hydroxymuconate isomerase YP_001669727.1 3904732 D 76869 CDS YP_001669728.1 167034497 5871288 3905190..3906497 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_0966 probable MFS transporter; major facilitator superfamily transporter 3906497 5871288 PputGB1_3501 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669728.1 3905190 D 76869 CDS YP_001669729.1 167034498 5871289 3906515..3907318 1 NC_010322.1 KEGG: pen:PSEEN3097 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (OHED hydratase); TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3907318 5871289 PputGB1_3502 Pseudomonas putida GB-1 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_001669729.1 3906515 D 76869 CDS YP_001669730.1 167034499 5871290 3907329..3908132 1 NC_010322.1 KEGG: pen:PSEEN3098 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, with PEP/pyruvate domain; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 3908132 5871290 PputGB1_3503 Pseudomonas putida GB-1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_001669730.1 3907329 D 76869 CDS YP_001669731.1 167034500 5871291 complement(3908182..3909111) 1 NC_010322.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3104 P-hydroxyphenylacetate hydroxylase C1:reductase component; flavin reductase domain-containing protein 3909111 5871291 PputGB1_3504 Pseudomonas putida GB-1 flavin reductase domain-containing protein YP_001669731.1 3908182 R 76869 CDS YP_001669732.1 167034501 5871292 complement(3909190..3910359) 1 NC_010322.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3105 P-hydroxyphenylacetate hydroxylase C2:oxygenase component; type 2 acyl-CoA dehydrogenase 3910359 5871292 PputGB1_3505 Pseudomonas putida GB-1 type 2 acyl-CoA dehydrogenase YP_001669732.1 3909190 R 76869 CDS YP_001669733.1 167034502 5871293 3910562..3911161 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN3089 transcriptional regulator, TetR family; TetR family transcriptional regulator 3911161 5871293 PputGB1_3506 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669733.1 3910562 D 76869 CDS YP_001669734.1 167034503 5871294 complement(3911173..3911595) 1 NC_010322.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: pen:PSEEN3090 homoprotocatechuate degradative operon repressor; MarR family transcriptional regulator 3911595 5871294 PputGB1_3507 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001669734.1 3911173 R 76869 CDS YP_001669735.1 167034504 5871295 3911841..3913139 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3099 oxidoreductase; aromatic-ring hydroxylase; FAD dependent oxidoreductase 3913139 5871295 PputGB1_3508 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001669735.1 3911841 D 76869 CDS YP_001669736.1 167034505 5871296 3913170..3913535 1 NC_010322.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN3100 hypothetical protein; hypothetical protein 3913535 5871296 PputGB1_3509 Pseudomonas putida GB-1 hypothetical protein YP_001669736.1 3913170 D 76869 CDS YP_001669737.1 167034506 5871297 complement(3913517..3914461) 1 NC_010322.1 activator of genes involved in phenylacetic acid catabolism; DNA-binding transcriptional activator FeaR 3914461 5871297 PputGB1_3510 Pseudomonas putida GB-1 DNA-binding transcriptional activator FeaR YP_001669737.1 3913517 R 76869 CDS YP_001669738.1 167034507 5871298 complement(3914575..3915147) 1 NC_010322.1 KEGG: pen:PSEEN3102 hypothetical protein; hypothetical protein 3915147 5871298 PputGB1_3511 Pseudomonas putida GB-1 hypothetical protein YP_001669738.1 3914575 R 76869 CDS YP_001669739.1 167034508 5871299 complement(3915128..3916624) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3103 amino acid permease; amino acid permease-associated protein 3916624 5871299 PputGB1_3512 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001669739.1 3915128 R 76869 CDS YP_001669740.1 167034509 5871300 3917001..3918488 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN3107 aldehyde dehydrogenase; aldehyde dehydrogenase 3918488 5871300 PputGB1_3513 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001669740.1 3917001 D 76869 CDS YP_001669741.1 167034510 5871301 3918667..3919977 1 NC_010322.1 KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 3919977 5871301 PputGB1_3514 Pseudomonas putida GB-1 hypothetical protein YP_001669741.1 3918667 D 76869 CDS YP_001669742.1 167034511 5871302 3920194..3921411 1 NC_010322.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3088 bicyclomycin/multidrug transport protein (MFS superfamily); Bcr/CflA subfamily drug resistance transporter 3921411 5871302 PputGB1_3515 Pseudomonas putida GB-1 Bcr/CflA subfamily drug resistance transporter YP_001669742.1 3920194 D 76869 CDS YP_001669743.1 167034512 5871303 3921537..3922676 1 NC_010322.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3922676 5871303 PputGB1_3516 Pseudomonas putida GB-1 ornithine cyclodeaminase YP_001669743.1 3921537 D 76869 CDS YP_001669744.1 167034513 5871304 3922709..3923131 1 NC_010322.1 PFAM: Endoribonuclease L-PSP; KEGG: mmw:Mmwyl1_3167 endoribonuclease L-PSP; endoribonuclease L-PSP 3923131 5871304 PputGB1_3517 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001669744.1 3922709 D 76869 CDS YP_001669745.1 167034514 5871305 3923185..3924480 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: mmw:Mmwyl1_0459 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3924480 5871305 PputGB1_3518 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001669745.1 3923185 D 76869 CDS YP_001669746.1 167034515 5871306 complement(3924631..3926676) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_34990 putative TonB-dependent receptor; TonB-dependent siderophore receptor 3926676 5871306 PputGB1_3519 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001669746.1 3924631 R 76869 CDS YP_001669747.1 167034516 5871307 3926893..3927135 1 NC_010322.1 PFAM: protein of unknown function DUF1654; KEGG: pen:PSEEN1950 hypothetical protein; hypothetical protein 3927135 5871307 PputGB1_3520 Pseudomonas putida GB-1 hypothetical protein YP_001669747.1 3926893 D 76869 CDS YP_001669748.1 167034517 5871308 3927142..3927834 1 NC_010322.1 PFAM: Endonuclease I; KEGG: pen:PSEEN1949 DNA-specific endonuclease I; deoxyribonuclease I 3927834 5871308 PputGB1_3521 Pseudomonas putida GB-1 deoxyribonuclease I YP_001669748.1 3927142 D 76869 CDS YP_001669749.1 167034518 5871309 complement(3927838..3928263) 1 NC_010322.1 KEGG: pen:PSEEN1948 hypothetical protein; hypothetical protein 3928263 5871309 PputGB1_3522 Pseudomonas putida GB-1 hypothetical protein YP_001669749.1 3927838 R 76869 CDS YP_001669750.1 167034519 5871310 complement(3928361..3928930) 1 NC_010322.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN2166 hypothetical protein; sporulation domain-containing protein 3928930 5871310 PputGB1_3523 Pseudomonas putida GB-1 sporulation domain-containing protein YP_001669750.1 3928361 R 76869 CDS YP_001669751.1 167034520 5871313 3929584..3930867 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2164 FAD-dependant oxidoreductase; FAD dependent oxidoreductase 3930867 5871313 PputGB1_3524 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001669751.1 3929584 D 76869 CDS YP_001669752.1 167034521 5871314 complement(3930985..3931719) 1 NC_010322.1 KEGG: pen:PSEEN2163 hypothetical protein; hypothetical protein 3931719 5871314 PputGB1_3525 Pseudomonas putida GB-1 hypothetical protein YP_001669752.1 3930985 R 76869 CDS YP_001669753.1 167034522 5871315 3931886..3932065 1 NC_010322.1 KEGG: pen:PSEEN2162 hypothetical protein; hypothetical protein 3932065 5871315 PputGB1_3526 Pseudomonas putida GB-1 hypothetical protein YP_001669753.1 3931886 D 76869 CDS YP_001669754.1 167034523 5871316 complement(3932135..3932887) 1 NC_010322.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN2161 hypothetical protein; integral membrane protein TerC 3932887 5871316 PputGB1_3527 Pseudomonas putida GB-1 integral membrane protein TerC YP_001669754.1 3932135 R 76869 CDS YP_001669755.1 167034524 5871317 complement(3932916..3933155) 1 NC_010322.1 KEGG: pen:PSEEN2160 lipoprotein; lipoprotein 3933155 5871317 PputGB1_3528 Pseudomonas putida GB-1 lipoprotein YP_001669755.1 3932916 R 76869 CDS YP_001669756.1 167034525 5871318 3933286..3934179 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2159 transcriptional activator, LysR family; LysR family transcriptional regulator 3934179 5871318 PputGB1_3529 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669756.1 3933286 D 76869 CDS YP_001669757.1 167034526 5871319 3934251..3935462 1 NC_010322.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3935462 5871319 PputGB1_3530 Pseudomonas putida GB-1 serine/threonine transporter SstT YP_001669757.1 3934251 D 76869 CDS YP_001669758.1 167034527 5871320 3935551..3936198 1 NC_010322.1 PFAM: protein of unknown function DUF480; KEGG: pen:PSEEN2299 hypothetical protein; hypothetical protein 3936198 5871320 PputGB1_3531 Pseudomonas putida GB-1 hypothetical protein YP_001669758.1 3935551 D 76869 CDS YP_001669759.1 167034528 5871321 complement(3936203..3936424) 1 NC_010322.1 KEGG: pen:PSEEN2298 hypothetical protein; hypothetical protein 3936424 5871321 PputGB1_3532 Pseudomonas putida GB-1 hypothetical protein YP_001669759.1 3936203 R 76869 CDS YP_001669760.1 167034529 5871322 complement(3936559..3938121) 1 NC_010322.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2297 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F 3938121 5871322 PputGB1_3533 Pseudomonas putida GB-1 alkyl hydroperoxide reductase subunit F YP_001669760.1 3936559 R 76869 CDS YP_001669761.1 167034530 5871323 complement(3938246..3938809) 1 NC_010322.1 TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2296 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); peroxiredoxin 3938809 5871323 PputGB1_3534 Pseudomonas putida GB-1 peroxiredoxin YP_001669761.1 3938246 R 76869 CDS YP_001669762.1 167034531 5871324 complement(3939041..3940396) 1 NC_010322.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3940396 5871324 PputGB1_3535 Pseudomonas putida GB-1 glutathione reductase YP_001669762.1 3939041 R 76869 CDS YP_001669763.1 167034532 5871325 complement(3940496..3941335) 1 NC_010322.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN2294 glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 3941335 5871325 PputGB1_3536 Pseudomonas putida GB-1 UTP-glucose-1-phosphate uridylyltransferase YP_001669763.1 3940496 R 76869 CDS YP_001669764.1 167034533 5871326 complement(3941564..3942478) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2293 cytochrome c; cytochrome c class I 3942478 5871326 PputGB1_3537 Pseudomonas putida GB-1 cytochrome c class I YP_001669764.1 3941564 R 76869 CDS YP_001669765.1 167034534 5871327 complement(3942475..3943125) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2292 cytochrome c; cytochrome c class I 3943125 5871327 PputGB1_3538 Pseudomonas putida GB-1 cytochrome c class I YP_001669765.1 3942475 R 76869 CDS YP_001669766.1 167034535 5871328 complement(3943203..3943562) 1 NC_010322.1 KEGG: pen:PSEEN2290 hypothetical protein; hypothetical protein 3943562 5871328 PputGB1_3539 Pseudomonas putida GB-1 hypothetical protein YP_001669766.1 3943203 R 76869 CDS YP_001669767.1 167034536 5871329 3943722..3944024 1 NC_010322.1 PFAM: Domain of unknown function DUF1883; KEGG: pen:PSEEN2289 hypothetical protein; hypothetical protein 3944024 5871329 PputGB1_3540 Pseudomonas putida GB-1 hypothetical protein YP_001669767.1 3943722 D 76869 CDS YP_001669768.1 167034537 5871330 3944032..3944202 1 NC_010322.1 KEGG: pen:PSEEN2288 hypothetical protein; hypothetical protein 3944202 5871330 PputGB1_3541 Pseudomonas putida GB-1 hypothetical protein YP_001669768.1 3944032 D 76869 CDS YP_001669769.1 167034538 5871331 3944254..3945339 1 NC_010322.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN2287 oxidoreductase, 2-nitropropane dioxygenase family; 2-nitropropane dioxygenase 3945339 5871331 PputGB1_3542 Pseudomonas putida GB-1 2-nitropropane dioxygenase YP_001669769.1 3944254 D 76869 CDS YP_001669770.1 167034539 5871332 3945422..3946180 1 NC_010322.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2286 molybdate ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3946180 5871332 PputGB1_3543 Pseudomonas putida GB-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001669770.1 3945422 D 76869 CDS YP_001669771.1 167034540 5871333 3946180..3946860 1 NC_010322.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2285 molybdate ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 3946860 5871333 PputGB1_3544 Pseudomonas putida GB-1 molybdate ABC transporter inner membrane subunit YP_001669771.1 3946180 D 76869 CDS YP_001669772.1 167034541 5871334 3946862..3947953 1 NC_010322.1 KEGG: pen:PSEEN2284 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3947953 5871334 PputGB1_3545 Pseudomonas putida GB-1 molybdate ABC transporter ATPase YP_001669772.1 3946862 D 76869 CDS YP_001669773.1 167034542 5871335 3948011..3949033 1 NC_010322.1 KEGG: pen:PSEEN2283 DNA topoisomerase IB; DNA topoisomerase 3949033 5871335 PputGB1_3546 Pseudomonas putida GB-1 DNA topoisomerase YP_001669773.1 3948011 D 76869 CDS YP_001669774.1 167034543 5871336 3949287..3949484 1 NC_010322.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3949484 5871336 PputGB1_3547 Pseudomonas putida GB-1 carbon storage regulator YP_001669774.1 3949287 D 76869 CDS YP_001669775.1 167034544 5871337 complement(3949530..3949883) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN2281 response regulator; response regulator receiver protein 3949883 5871337 PputGB1_3548 Pseudomonas putida GB-1 response regulator receiver protein YP_001669775.1 3949530 R 76869 CDS YP_001669776.1 167034545 5871338 complement(3949895..3951340) 1 NC_010322.1 KEGG: pen:PSEEN2280 signal transduction protein; PFAM: KaiA binding; SMART: AAA ATPase; non-specific serine/threonine protein kinase 3951340 5871338 PputGB1_3549 Pseudomonas putida GB-1 non-specific serine/threonine protein kinase YP_001669776.1 3949895 R 76869 CDS YP_001669777.1 167034546 5871339 complement(3951346..3952506) 1 NC_010322.1 KEGG: pen:PSEEN2279 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 3952506 5871339 PputGB1_3550 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001669777.1 3951346 R 76869 CDS YP_001669778.1 167034547 5871340 complement(3952590..3952865) 1 NC_010322.1 KEGG: pen:PSEEN2278 hypothetical protein; hypothetical protein 3952865 5871340 PputGB1_3551 Pseudomonas putida GB-1 hypothetical protein YP_001669778.1 3952590 R 76869 CDS YP_001669779.1 167034548 5871342 3953255..3953668 1 NC_010322.1 PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein; DoxX family protein 3953668 5871342 PputGB1_3552 Pseudomonas putida GB-1 DoxX family protein YP_001669779.1 3953255 D 76869 CDS YP_001669780.1 167034549 5871343 complement(3953670..3953867) 1 NC_010322.1 KEGG: pen:PSEEN2274 hypothetical protein; hypothetical protein 3953867 5871343 PputGB1_3553 Pseudomonas putida GB-1 hypothetical protein YP_001669780.1 3953670 R 76869 CDS YP_001669781.1 167034550 5871344 3954309..3955319 1 NC_010322.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 3955319 5871344 PputGB1_3554 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001669781.1 3954309 D 76869 CDS YP_001669782.1 167034551 5871345 3955411..3955617 1 NC_010322.1 KEGG: psb:Psyr_3356 hypothetical protein; hypothetical protein 3955617 5871345 PputGB1_3555 Pseudomonas putida GB-1 hypothetical protein YP_001669782.1 3955411 D 76869 CDS YP_001669783.1 167034552 5871347 complement(3956599..3957618) 1 NC_010322.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 3957618 5871347 PputGB1_3556 Pseudomonas putida GB-1 putative periplasmic protease YP_001669783.1 3956599 R 76869 CDS YP_001669784.1 167034553 5871348 3957816..3958526 1 NC_010322.1 PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2270 phosphoglycerate mutase family protein; phosphoglycerate mutase 3958526 5871348 PputGB1_3557 Pseudomonas putida GB-1 phosphoglycerate mutase YP_001669784.1 3957816 D 76869 CDS YP_001669785.1 167034554 5871349 3958583..3958900 1 NC_010322.1 PFAM: Sterol-binding domain protein; KEGG: pfo:Pfl_3116 sterol-binding; sterol-binding domain-containing protein 3958900 5871349 PputGB1_3558 Pseudomonas putida GB-1 sterol-binding domain-containing protein YP_001669785.1 3958583 D 76869 CDS YP_001669786.1 167034555 5871350 3959086..3960153 1 NC_010322.1 PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN2268 aminoglycoside aminotranferase; aminoglycoside phosphotransferase 3960153 5871350 PputGB1_3559 Pseudomonas putida GB-1 aminoglycoside phosphotransferase YP_001669786.1 3959086 D 76869 CDS YP_001669787.1 167034556 5871351 3960189..3960956 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2267 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3960956 5871351 PputGB1_3560 Pseudomonas putida GB-1 short chain dehydrogenase YP_001669787.1 3960189 D 76869 CDS YP_001669788.1 167034557 5871352 complement(3960957..3961778) 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2266 hypothetical protein; type 12 methyltransferase 3961778 5871352 PputGB1_3561 Pseudomonas putida GB-1 type 12 methyltransferase YP_001669788.1 3960957 R 76869 CDS YP_001669789.1 167034558 5871353 complement(3961890..3962240) 1 NC_010322.1 KEGG: pen:PSEEN2264 hypothetical protein; hypothetical protein 3962240 5871353 PputGB1_3562 Pseudomonas putida GB-1 hypothetical protein YP_001669789.1 3961890 R 76869 CDS YP_001669790.1 167034559 5871354 complement(3962313..3963473) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase 3963473 5871354 PputGB1_3563 Pseudomonas putida GB-1 diguanylate cyclase YP_001669790.1 3962313 R 76869 CDS YP_001669791.1 167034560 5871355 3963963..3964355 1 NC_010322.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN2262 hypothetical protein; 17 kDa surface antigen 3964355 5871355 PputGB1_3564 Pseudomonas putida GB-1 17 kDa surface antigen YP_001669791.1 3963963 D 76869 CDS YP_001669792.1 167034561 5871356 3964482..3966311 1 NC_010322.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2261 transporter, sodium:sulfate symporter family; citrate transporter 3966311 5871356 PputGB1_3565 Pseudomonas putida GB-1 citrate transporter YP_001669792.1 3964482 D 76869 CDS YP_001669793.1 167034562 5871357 3966491..3967873 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN2260 diguanylate cyclase (GGDEF) domain; diguanylate cyclase 3967873 5871357 PputGB1_3566 Pseudomonas putida GB-1 diguanylate cyclase YP_001669793.1 3966491 D 76869 CDS YP_001669794.1 167034563 5871358 complement(3967875..3968636) 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein; hypothetical protein 3968636 5871358 PputGB1_3567 Pseudomonas putida GB-1 hypothetical protein YP_001669794.1 3967875 R 76869 CDS YP_001669795.1 167034564 5871359 3968735..3969640 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2258 transcriptional regulator, LysR family; LysR family transcriptional regulator 3969640 5871359 PputGB1_3568 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669795.1 3968735 D 76869 CDS YP_001669796.1 167034565 5871360 complement(3969771..3969965) 1 NC_010322.1 KEGG: pen:PSEEN2257 hypothetical protein; hypothetical protein 3969965 5871360 PputGB1_3569 Pseudomonas putida GB-1 hypothetical protein YP_001669796.1 3969771 R 76869 CDS YP_001669798.1 167034567 5871362 complement(3970334..3970690) 1 NC_010322.1 PFAM: Variant SH3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN2253 hypothetical protein; SH3 domain-containing protein 3970690 5871362 PputGB1_3571 Pseudomonas putida GB-1 SH3 domain-containing protein YP_001669798.1 3970334 R 76869 CDS YP_001669799.1 167034568 5871363 3970896..3971936 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3971936 5871363 PputGB1_3572 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669799.1 3970896 D 76869 CDS YP_001669800.1 167034569 5871364 3972229..3972414 1 NC_010322.1 hypothetical protein 3972414 5871364 PputGB1_3573 Pseudomonas putida GB-1 hypothetical protein YP_001669800.1 3972229 D 76869 CDS YP_001669801.1 167034570 5871365 complement(3972498..3973790) 1 NC_010322.1 PFAM: outer membrane porin; KEGG: psa:PST_1676 benzoate-specific porin; outer membrane porin 3973790 5871365 PputGB1_3574 Pseudomonas putida GB-1 outer membrane porin YP_001669801.1 3972498 R 76869 CDS YP_001669802.1 167034571 5871366 complement(3973930..3975243) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2307 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3975243 5871366 PputGB1_3575 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669802.1 3973930 R 76869 CDS YP_001669803.1 167034572 5871367 complement(3975452..3976093) 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: spe:Spro_2308 N-carbamoylsarcosine amidase; isochorismatase hydrolase 3976093 5871367 PputGB1_3576 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001669803.1 3975452 R 76869 CDS YP_001669804.1 167034573 5871368 complement(3976108..3976860) 1 NC_010322.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_2309 Asp/Glu racemase; Asp/Glu/hydantoin racemase 3976860 5871368 PputGB1_3577 Pseudomonas putida GB-1 Asp/Glu/hydantoin racemase YP_001669804.1 3976108 R 76869 CDS YP_001669805.1 167034574 5871369 complement(3976874..3977680) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: spe:Spro_2310 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3977680 5871369 PputGB1_3578 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669805.1 3976874 R 76869 CDS YP_001669806.1 167034575 5871370 complement(3977677..3978825) 1 NC_010322.1 PFAM: monooxygenase FAD-binding; KEGG: spe:Spro_2311 monooxygenase FAD-binding; monooxygenase FAD-binding 3978825 5871370 PputGB1_3579 Pseudomonas putida GB-1 monooxygenase FAD-binding YP_001669806.1 3977677 R 76869 CDS YP_001669807.1 167034576 5871371 3979146..3980198 1 NC_010322.1 KEGG: spe:Spro_2312 hypothetical protein; hypothetical protein 3980198 5871371 PputGB1_3580 Pseudomonas putida GB-1 hypothetical protein YP_001669807.1 3979146 D 76869 CDS YP_001669808.1 167034577 5871372 3980268..3980744 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: azc:AZC_2473 transcriptional regulator; MarR family transcriptional regulator 3980744 5871372 PputGB1_3581 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001669808.1 3980268 D 76869 CDS YP_001669809.1 167034578 5871373 3980945..3981418 1 NC_010322.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pap:PSPA7_3672 probable oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3981418 5871373 PputGB1_3582 Pseudomonas putida GB-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001669809.1 3980945 D 76869 CDS YP_001669810.1 167034579 5871374 3981415..3984978 1 NC_010322.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cytochrome c class I; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: spe:Spro_2315 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3984978 5871374 PputGB1_3583 Pseudomonas putida GB-1 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001669810.1 3981415 D 76869 CDS YP_001669811.1 167034580 5871375 complement(3984982..3985620) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: bxe:Bxe_B0653 transcriptional regulator, TetR family; TetR family transcriptional regulator 3985620 5871375 PputGB1_3584 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669811.1 3984982 R 76869 CDS YP_001669812.1 167034581 5871376 3985726..3986688 1 NC_010322.1 PFAM: protein of unknown function DUF182; KEGG: pap:PSPA7_5263 hypothetical protein; hypothetical protein 3986688 5871376 PputGB1_3585 Pseudomonas putida GB-1 hypothetical protein YP_001669812.1 3985726 D 76869 CDS YP_001669813.1 167034582 5871377 complement(3986715..3987998) 1 NC_010322.1 TIGRFAM: salicylate 1-monooxygenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aci:ACIAD1424 salicylate 1-monooxygenase; salicylate 1-monooxygenase 3987998 5871377 PputGB1_3586 Pseudomonas putida GB-1 salicylate 1-monooxygenase YP_001669813.1 3986715 R 76869 CDS YP_001669814.1 167034583 5871378 complement(3988110..3989447) 1 NC_010322.1 PFAM: General substrate transporter; protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: eba:ebA5311 benzoate MFS transporter; major facilitator superfamily transporter 3989447 5871378 PputGB1_3587 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669814.1 3988110 R 76869 CDS YP_001669815.1 167034584 5871379 3989682..3990587 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2518 LysR-family transcriptional regulator; LysR family transcriptional regulator 3990587 5871379 PputGB1_3588 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669815.1 3989682 D 76869 CDS YP_001669816.1 167034585 5871380 complement(3990644..3991798) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA3773 hypothetical protein; major facilitator superfamily transporter 3991798 5871380 PputGB1_3589 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001669816.1 3990644 R 76869 CDS YP_001669817.1 167034586 5871381 3992080..3993297 1 NC_010322.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3993297 5871381 PputGB1_3590 Pseudomonas putida GB-1 cytosine deaminase YP_001669817.1 3992080 D 76869 CDS YP_001669818.1 167034587 5871382 complement(3993370..3994248) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3994248 5871382 PputGB1_3591 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669818.1 3993370 R 76869 CDS YP_001669819.1 167034588 5871383 complement(3994360..3994809) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rde:RD1_3192 acetyltransferase, putative; N-acetyltransferase GCN5 3994809 5871383 PputGB1_3592 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669819.1 3994360 R 76869 CDS YP_001669820.1 167034589 5871384 3995038..3995733 1 NC_010322.1 KEGG: bxe:Bxe_B0643 3-oxoadipate CoA-transferase subunit A (PcaI); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3995733 5871384 PputGB1_3593 Pseudomonas putida GB-1 3-oxoacid CoA-transferase subunit A YP_001669820.1 3995038 D 76869 CDS YP_001669821.1 167034590 5871385 3995742..3996383 1 NC_010322.1 KEGG: bmu:Bmul_5287 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3996383 5871385 PputGB1_3594 Pseudomonas putida GB-1 3-oxoacid CoA-transferase subunit B YP_001669821.1 3995742 D 76869 CDS YP_001669822.1 167034591 5871386 complement(3996627..3996800) 1 NC_010322.1 hypothetical protein 3996800 5871386 PputGB1_3595 Pseudomonas putida GB-1 hypothetical protein YP_001669822.1 3996627 R 76869 CDS YP_001669823.1 167034592 5871388 3997186..3997857 1 NC_010322.1 PFAM: protein of unknown function UPF0005; KEGG: pen:PSEEN2225 hypothetical protein; hypothetical protein 3997857 5871388 PputGB1_3596 Pseudomonas putida GB-1 hypothetical protein YP_001669823.1 3997186 D 76869 CDS YP_001669824.1 167034593 5871389 3998037..3999416 1 NC_010322.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN2224 transporter, xanthine/uracil permease family; xanthine permease 3999416 5871389 PputGB1_3597 Pseudomonas putida GB-1 xanthine permease YP_001669824.1 3998037 D 76869 CDS YP_001669825.1 167034594 5871390 3999593..3999985 1 NC_010322.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3999985 5871390 PputGB1_3598 Pseudomonas putida GB-1 sulfur transfer complex subunit TusD YP_001669825.1 3999593 D 76869 CDS YP_001669826.1 167034595 5871391 3999987..4000346 1 NC_010322.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 4000346 5871391 PputGB1_3599 Pseudomonas putida GB-1 sulfur relay protein TusC YP_001669826.1 3999987 D 76869 CDS YP_001669827.1 167034596 5871392 4000346..4000642 1 NC_010322.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: pen:PSEEN2221 hypothetical protein; sulfur relay protein TusB/DsrH 4000642 5871392 PputGB1_3600 Pseudomonas putida GB-1 sulfur relay protein TusB/DsrH YP_001669827.1 4000346 D 76869 CDS YP_001669828.1 167034597 5871393 4000639..4000974 1 NC_010322.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pen:PSEEN2220 sulfite reductase, gamma subunit DsrC-like; TusE/DsrC/DsvC family sulfur relay protein 4000974 5871393 PputGB1_3601 Pseudomonas putida GB-1 TusE/DsrC/DsvC family sulfur relay protein YP_001669828.1 4000639 D 76869 CDS YP_001669829.1 167034598 5871394 4000971..4001972 1 NC_010322.1 PFAM: glycosyl transferase family 3; KEGG: pen:PSEEN2219 phosphoribosyltransferase; hypothetical protein 4001972 5871394 PputGB1_3602 Pseudomonas putida GB-1 hypothetical protein YP_001669829.1 4000971 D 76869 CDS YP_001669830.1 167034599 5871395 4002069..4003028 1 NC_010322.1 KEGG: pen:PSEEN2218 hypothetical protein; hypothetical protein 4003028 5871395 PputGB1_3603 Pseudomonas putida GB-1 hypothetical protein YP_001669830.1 4002069 D 76869 CDS YP_001669831.1 167034600 5871396 complement(4003062..4004453) 1 NC_010322.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2217 siroheme synthase; uroporphyrin-III C-methyltransferase 4004453 5871396 PputGB1_3604 Pseudomonas putida GB-1 uroporphyrin-III C-methyltransferase YP_001669831.1 4003062 R 76869 CDS YP_001669832.1 167034601 5871397 complement(4004454..4005734) 1 NC_010322.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 4005734 5871397 PputGB1_3605 Pseudomonas putida GB-1 seryl-tRNA synthetase YP_001669832.1 4004454 R 76869 CDS YP_001669833.1 167034602 5871398 complement(4005765..4006139) 1 NC_010322.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 4006139 5871398 PputGB1_3606 Pseudomonas putida GB-1 camphor resistance protein CrcB YP_001669833.1 4005765 R 76869 CDS YP_001669834.1 167034603 5871399 complement(4006136..4007461) 1 NC_010322.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2214 DNA-dependant ATPase; recombination factor protein RarA 4007461 5871399 PputGB1_3607 Pseudomonas putida GB-1 recombination factor protein RarA YP_001669834.1 4006136 R 76869 CDS YP_001669835.1 167034604 5871400 complement(4007474..4008097) 1 NC_010322.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 4008097 lolA 5871400 lolA Pseudomonas putida GB-1 outer-membrane lipoprotein carrier protein YP_001669835.1 4007474 R 76869 CDS YP_001669836.1 167034605 5871401 complement(4008160..4010583) 1 NC_010322.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pen:PSEEN2212 cell division protein FtsK; cell division protein FtsK 4010583 5871401 PputGB1_3609 Pseudomonas putida GB-1 cell division protein FtsK YP_001669836.1 4008160 R 76869 CDS YP_001669837.1 167034606 5871402 4011022..4011702 1 NC_010322.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 4011702 aat 5871402 aat Pseudomonas putida GB-1 leucyl/phenylalanyl-tRNA--protein transferase YP_001669837.1 4011022 D 76869 CDS YP_001669838.1 167034607 5871403 4011759..4012466 1 NC_010322.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 4012466 5871403 PputGB1_3611 Pseudomonas putida GB-1 arginyl-tRNA-protein transferase YP_001669838.1 4011759 D 76869 CDS YP_001669839.1 167034608 5871404 4012569..4012787 1 NC_010322.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4012787 infA 5871404 infA Pseudomonas putida GB-1 translation initiation factor IF-1 YP_001669839.1 4012569 D 76869 CDS YP_001669840.1 167034609 5871405 complement(4012873..4015143) 1 NC_010322.1 KEGG: pen:PSEEN2207 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 4015143 5871405 PputGB1_3613 Pseudomonas putida GB-1 ATP-dependent Clp protease ATP-binding protein ClpA YP_001669840.1 4012873 R 76869 CDS YP_001669841.1 167034610 5871406 complement(4015174..4015536) 1 NC_010322.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 4015536 clpS 5871406 clpS Pseudomonas putida GB-1 ATP-dependent Clp protease adaptor protein ClpS YP_001669841.1 4015174 R 76869 CDS YP_001669842.1 167034611 5871407 4015767..4016021 1 NC_010322.1 KEGG: pen:PSEEN2205 cold-shock protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 4016021 5871407 PputGB1_3615 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001669842.1 4015767 D 76869 CDS YP_001669843.1 167034612 5871408 complement(4016093..4017349) 1 NC_010322.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pen:PSEEN2204 isocitrate dehydrogenase; isocitrate dehydrogenase 4017349 5871408 PputGB1_3616 Pseudomonas putida GB-1 isocitrate dehydrogenase YP_001669843.1 4016093 R 76869 CDS YP_001669844.1 167034613 5871409 4017764..4019989 1 NC_010322.1 KEGG: pen:PSEEN2202 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 4019989 5871409 PputGB1_3617 Pseudomonas putida GB-1 isocitrate dehydrogenase YP_001669844.1 4017764 D 76869 CDS YP_001669845.1 167034614 5871410 4020211..4020651 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2201 hydrolase, NUDIX family; NUDIX hydrolase 4020651 5871410 PputGB1_3618 Pseudomonas putida GB-1 NUDIX hydrolase YP_001669845.1 4020211 D 76869 CDS YP_001669846.1 167034615 5871411 4020711..4021835 1 NC_010322.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4021835 mnmA 5871411 mnmA Pseudomonas putida GB-1 tRNA-specific 2-thiouridylase MnmA YP_001669846.1 4020711 D 76869 CDS YP_001669847.1 167034616 5871412 4021832..4022458 1 NC_010322.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 4022458 5871412 PputGB1_3620 Pseudomonas putida GB-1 hypothetical protein YP_001669847.1 4021832 D 76869 CDS YP_001669848.1 167034617 5871413 4022600..4024018 1 NC_010322.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4024018 5871413 PputGB1_3621 Pseudomonas putida GB-1 adenylosuccinate lyase YP_001669848.1 4022600 D 76869 CDS YP_001669849.1 167034618 5871414 4024100..4025266 1 NC_010322.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: pen:PSEEN2197 hypothetical protein; cupin 4 family protein 4025266 5871414 PputGB1_3622 Pseudomonas putida GB-1 cupin 4 family protein YP_001669849.1 4024100 D 76869 CDS YP_001669850.1 167034619 5871415 4025259..4025687 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2196 acetyl transferase, GNAT family; N-acetyltransferase GCN5 4025687 5871415 PputGB1_3623 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669850.1 4025259 D 76869 CDS YP_001669851.1 167034620 5871416 4025856..4027814 1 NC_010322.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 4027814 5871416 PputGB1_3624 Pseudomonas putida GB-1 DNA topoisomerase III YP_001669851.1 4025856 D 76869 CDS YP_001669852.1 167034621 5871417 4027892..4029181 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2188 oxidoreductase with FAD/NAD(P)-binding domain; FAD dependent oxidoreductase 4029181 5871417 PputGB1_3625 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001669852.1 4027892 D 76869 CDS YP_001669853.1 167034622 5871418 4029263..4030093 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl_2172 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4030093 5871418 PputGB1_3626 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669853.1 4029263 D 76869 CDS YP_001669854.1 167034623 5871419 4030234..4031013 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2185 hypothetical protein; hypothetical protein 4031013 5871419 PputGB1_3627 Pseudomonas putida GB-1 hypothetical protein YP_001669854.1 4030234 D 76869 CDS YP_001669855.1 167034624 5871420 complement(4030981..4031811) 1 NC_010322.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4031811 nudC 5871420 nudC Pseudomonas putida GB-1 NADH pyrophosphatase YP_001669855.1 4030981 R 76869 CDS YP_001669856.1 167034625 5871421 complement(4031849..4032661) 1 NC_010322.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4032661 5871421 PputGB1_3629 Pseudomonas putida GB-1 enoyl-CoA hydratase YP_001669856.1 4031849 R 76869 CDS YP_001669857.1 167034626 5871422 4032812..4034314 1 NC_010322.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 4034314 nhaB 5871422 nhaB Pseudomonas putida GB-1 sodium/proton antiporter YP_001669857.1 4032812 D 76869 CDS YP_001669858.1 167034627 5871423 4034445..4035062 1 NC_010322.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: pen:PSEEN2180 hypothetical protein; deaminase-reductase domain-containing protein 4035062 5871423 PputGB1_3631 Pseudomonas putida GB-1 deaminase-reductase domain-containing protein YP_001669858.1 4034445 D 76869 CDS YP_001669859.1 167034628 5871424 4035141..4035686 1 NC_010322.1 PFAM: Lipocalin family protein; KEGG: pmy:Pmen_0511 lipocalin family protein; lipocalin family protein 4035686 5871424 PputGB1_3632 Pseudomonas putida GB-1 lipocalin family protein YP_001669859.1 4035141 D 76869 CDS YP_001669860.1 167034629 5871425 4035756..4036217 1 NC_010322.1 KEGG: psb:Psyr_2640 NUDIX hydrolase; NUDIX hydrolase 4036217 5871425 PputGB1_3633 Pseudomonas putida GB-1 NUDIX hydrolase YP_001669860.1 4035756 D 76869 CDS YP_001669861.1 167034630 5871426 4036235..4037194 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN2683 ribonuclease Z; ribonuclease Z 4037194 5871426 PputGB1_3634 Pseudomonas putida GB-1 ribonuclease Z YP_001669861.1 4036235 D 76869 CDS YP_001669862.1 167034631 5871427 4037201..4037770 1 NC_010322.1 KEGG: pen:PSEEN3303 hypothetical protein; hypothetical protein 4037770 5871427 PputGB1_3635 Pseudomonas putida GB-1 hypothetical protein YP_001669862.1 4037201 D 76869 CDS YP_001669863.1 167034632 5871428 complement(4037789..4039072) 1 NC_010322.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 4039072 5871428 PputGB1_3636 Pseudomonas putida GB-1 allantoate amidohydrolase YP_001669863.1 4037789 R 76869 CDS YP_001669864.1 167034633 5871429 complement(4039084..4040601) 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3254 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease 4040601 5871429 PputGB1_3637 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001669864.1 4039084 R 76869 CDS YP_001669865.1 167034634 5871430 4040945..4042384 1 NC_010322.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 4042384 5871430 PputGB1_3638 Pseudomonas putida GB-1 phenylhydantoinase YP_001669865.1 4040945 D 76869 CDS YP_001669866.1 167034635 5871431 4042468..4043835 1 NC_010322.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 4043835 5871431 PputGB1_3639 Pseudomonas putida GB-1 putative oxidoreductase YP_001669866.1 4042468 D 76869 CDS YP_001669867.1 167034636 5871432 4043836..4045110 1 NC_010322.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4045110 5871432 PputGB1_3640 Pseudomonas putida GB-1 dihydropyrimidine dehydrogenase YP_001669867.1 4043836 D 76869 CDS YP_001669868.1 167034637 5871433 complement(4045286..4045906) 1 NC_010322.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN3246 transcriptional regulator, TetR family; TetR family transcriptional regulator 4045906 5871433 PputGB1_3641 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001669868.1 4045286 R 76869 CDS YP_001669869.1 167034638 5871434 complement(4045906..4046262) 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_4319 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4046262 5871434 PputGB1_3642 Pseudomonas putida GB-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001669869.1 4045906 R 76869 CDS YP_001669870.1 167034639 5871435 complement(4046322..4046609) 1 NC_010322.1 TIGRFAM: addiction module antidote protein, HigA family; KEGG: pen:PSEEN1946 proteic killer active protein; XRE family plasmid maintenance system antidote protein 4046609 5871435 PputGB1_3643 Pseudomonas putida GB-1 XRE family plasmid maintenance system antidote protein YP_001669870.1 4046322 R 76869 CDS YP_001669871.1 167034640 5871436 complement(4046625..4046951) 1 NC_010322.1 PFAM: plasmid maintenance system killer; KEGG: pen:PSEEN1945 proteic killer suppression protein; plasmid maintenance system killer protein 4046951 5871436 PputGB1_3644 Pseudomonas putida GB-1 plasmid maintenance system killer protein YP_001669871.1 4046625 R 76869 CDS YP_001669872.1 167034641 5871437 complement(4047020..4048816) 1 NC_010322.1 PFAM: glycoside hydrolase 15-related; KEGG: pen:PSEEN1941 glycosyl hydrolase, family 15; glycoside hydrolase 15-related 4048816 5871437 PputGB1_3645 Pseudomonas putida GB-1 glycoside hydrolase 15-related YP_001669872.1 4047020 R 76869 CDS YP_001669873.1 167034642 5871438 complement(4048961..4050466) 1 NC_010322.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4050466 5871438 PputGB1_3646 Pseudomonas putida GB-1 glucose-6-phosphate 1-dehydrogenase YP_001669873.1 4048961 R 76869 CDS YP_001669874.1 167034643 5871439 complement(4050463..4051446) 1 NC_010322.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 4051446 5871439 PputGB1_3647 Pseudomonas putida GB-1 6-phosphogluconate dehydrogenase YP_001669874.1 4050463 R 76869 CDS YP_001669875.1 167034644 5871440 4051651..4051818 1 NC_010322.1 KEGG: pen:PSEEN1938 hypothetical protein; hypothetical protein 4051818 5871440 PputGB1_3648 Pseudomonas putida GB-1 hypothetical protein YP_001669875.1 4051651 D 76869 CDS YP_001669876.1 167034645 5871441 4052354..4053913 1 NC_010322.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 4053913 glgA 5871441 glgA Pseudomonas putida GB-1 glycogen synthase YP_001669876.1 4052354 D 76869 CDS YP_001669877.1 167034646 5871442 4053928..4055670 1 NC_010322.1 KEGG: pen:PSEEN2053 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 4055670 5871442 PputGB1_3650 Pseudomonas putida GB-1 malto-oligosyltrehalose trehalohydrolase YP_001669877.1 4053928 D 76869 CDS YP_001669878.1 167034647 5871443 4055667..4057736 1 NC_010322.1 KEGG: pen:PSEEN2052 4-alpha-glucanotransferase MalQ; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 4057736 5871443 PputGB1_3651 Pseudomonas putida GB-1 4-alpha-glucanotransferase YP_001669878.1 4055667 D 76869 CDS YP_001669879.1 167034648 5871444 4057733..4060507 1 NC_010322.1 KEGG: pen:PSEEN2051 maltooligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; maltooligosyl trehalose synthase 4060507 5871444 PputGB1_3652 Pseudomonas putida GB-1 maltooligosyl trehalose synthase YP_001669879.1 4057733 D 76869 CDS YP_001669880.1 167034649 5871445 4060522..4060788 1 NC_010322.1 KEGG: pen:PSEEN2050 hypothetical protein; hypothetical protein 4060788 5871445 PputGB1_3653 Pseudomonas putida GB-1 hypothetical protein YP_001669880.1 4060522 D 76869 CDS YP_001669881.1 167034650 5871446 4060940..4063093 1 NC_010322.1 KEGG: pen:PSEEN2049 glycosyl hydrolase GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 4063093 5871446 PputGB1_3654 Pseudomonas putida GB-1 glycogen debranching protein GlgX YP_001669881.1 4060940 D 76869 CDS YP_001669882.1 167034651 5871447 4063166..4063960 1 NC_010322.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfl:PFL_2876 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 4063960 5871447 PputGB1_3655 Pseudomonas putida GB-1 endonuclease/exonuclease/phosphatase YP_001669882.1 4063166 D 76869 CDS YP_001669883.1 167034652 5871448 4064279..4065355 1 NC_010322.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN2047 outer membrane, autotransporter barrel domain protein; outer membrane autotransporter 4065355 5871448 PputGB1_3656 Pseudomonas putida GB-1 outer membrane autotransporter YP_001669883.1 4064279 D 76869 CDS YP_001669884.1 167034653 5871449 complement(4065479..4067689) 1 NC_010322.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 4067689 5871449 PputGB1_3657 Pseudomonas putida GB-1 glycogen branching protein YP_001669884.1 4065479 R 76869 CDS YP_001669885.1 167034654 5871450 complement(4067686..4071006) 1 NC_010322.1 KEGG: pen:PSEEN2045 trehalose synthase/glycosidase fusion protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 4071006 5871450 PputGB1_3658 Pseudomonas putida GB-1 trehalose synthase YP_001669885.1 4067686 R 76869 CDS YP_001669886.1 167034655 5871451 complement(4071057..4073075) 1 NC_010322.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pen:PSEEN2044 glycosidase, alpha-amylase family protein; alpha amylase 4073075 5871451 PputGB1_3659 Pseudomonas putida GB-1 alpha amylase YP_001669886.1 4071057 R 76869 CDS YP_001669887.1 167034656 5871452 4073215..4073376 1 NC_010322.1 KEGG: pen:PSEEN2043 hypothetical protein; hypothetical protein 4073376 5871452 PputGB1_3660 Pseudomonas putida GB-1 hypothetical protein YP_001669887.1 4073215 D 76869 CDS YP_001669888.1 167034657 5871453 complement(4073516..4075198) 1 NC_010322.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 4075198 5871453 PputGB1_3661 Pseudomonas putida GB-1 AMP-binding domain-containing protein YP_001669888.1 4073516 R 76869 CDS YP_001669889.1 167034658 5871454 4075418..4076581 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3386 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4076581 5871454 PputGB1_3662 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001669889.1 4075418 D 76869 CDS YP_001669890.1 167034659 5871455 4076602..4078209 1 NC_010322.1 PFAM: carboxyl transferase; KEGG: pen:PSEEN3387 3-methylcrotonyl-CoA carboxylase, beta subunit; propionyl-CoA carboxylase 4078209 5871455 PputGB1_3663 Pseudomonas putida GB-1 propionyl-CoA carboxylase YP_001669890.1 4076602 D 76869 CDS YP_001669891.1 167034660 5871456 4078213..4079028 1 NC_010322.1 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 4079028 5871456 PputGB1_3664 Pseudomonas putida GB-1 gamma-carboxygeranoyl-CoA hydratase YP_001669891.1 4078213 D 76869 CDS YP_001669892.1 167034661 5871457 4079025..4080977 1 NC_010322.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pen:PSEEN3389 methylcrotonoyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase L chain ATP-binding 4080977 5871457 PputGB1_3665 Pseudomonas putida GB-1 carbamoyl-phosphate synthase L chain ATP-binding YP_001669892.1 4079025 D 76869 CDS YP_001669893.1 167034662 5871458 complement(4081010..4081663) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN3390 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 4081663 5871458 PputGB1_3666 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669893.1 4081010 R 76869 CDS YP_001669894.1 167034663 5871459 4081794..4082108 1 NC_010322.1 KEGG: pen:PSEEN3391 hypothetical protein; hypothetical protein 4082108 5871459 PputGB1_3667 Pseudomonas putida GB-1 hypothetical protein YP_001669894.1 4081794 D 76869 CDS YP_001669895.1 167034664 5871460 4082541..4083056 1 NC_010322.1 PFAM: Sigma-70 region 4 type 2; KEGG: pen:PSEEN3392 hypothetical protein; sigma-70 region 4 type 2 4083056 5871460 PputGB1_3668 Pseudomonas putida GB-1 sigma-70 region 4 type 2 YP_001669895.1 4082541 D 76869 CDS YP_001669896.1 167034665 5871461 4083218..4084471 1 NC_010322.1 PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rpa:RPA3398 possible arsenite permease; arsenical pump membrane protein 4084471 5871461 PputGB1_3669 Pseudomonas putida GB-1 arsenical pump membrane protein YP_001669896.1 4083218 D 76869 CDS YP_001669897.1 167034666 5871463 complement(4084773..4085333) 1 NC_010322.1 KEGG: pen:PSEEN3448 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4085333 5871463 PputGB1_3670 Pseudomonas putida GB-1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001669897.1 4084773 R 76869 CDS YP_001669898.1 167034667 5871464 complement(4085367..4087124) 1 NC_010322.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 4087124 uvrC 5871464 uvrC Pseudomonas putida GB-1 excinuclease ABC subunit C YP_001669898.1 4085367 R 76869 CDS YP_001669899.1 167034668 5871465 complement(4087285..4087830) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3450 response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family); two component LuxR family transcriptional regulator 4087830 5871465 PputGB1_3672 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001669899.1 4087285 R 76869 CDS YP_001669900.1 167034669 5871466 complement(4087894..4088283) 1 NC_010322.1 SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN3451 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 4088283 5871466 PputGB1_3673 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001669900.1 4087894 R 76869 CDS YP_001669901.1 167034670 5871467 complement(4088402..4088833) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4088833 5871467 PputGB1_3674 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001669901.1 4088402 R 76869 CDS YP_001669902.1 167034671 5871468 complement(4088844..4089230) 1 NC_010322.1 PFAM: protein of unknown function DUF488; KEGG: pen:PSEEN3465 hypothetical protein; hypothetical protein 4089230 5871468 PputGB1_3675 Pseudomonas putida GB-1 hypothetical protein YP_001669902.1 4088844 R 76869 CDS YP_001669903.1 167034672 5871469 4089358..4090974 1 NC_010322.1 PFAM: phosphate transporter; KEGG: pen:PSEEN3466 low-affinity inorganic phosphate transporter; phosphate transporter 4090974 5871469 PputGB1_3676 Pseudomonas putida GB-1 phosphate transporter YP_001669903.1 4089358 D 76869 CDS YP_001669904.1 167034673 5871470 complement(4090987..4091682) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN3467 glutathione S-transferase; glutathione S-transferase domain-containing protein 4091682 5871470 PputGB1_3677 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001669904.1 4090987 R 76869 CDS YP_001669905.1 167034674 5871471 complement(4091770..4092267) 1 NC_010322.1 KEGG: pen:PSEEN3472 hypothetical protein; hypothetical protein 4092267 5871471 PputGB1_3678 Pseudomonas putida GB-1 hypothetical protein YP_001669905.1 4091770 R 76869 CDS YP_001669906.1 167034675 5871472 complement(4092325..4093707) 1 NC_010322.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN3473 gamma-aminobutyrate permease; amino acid permease-associated protein 4093707 5871472 PputGB1_3679 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001669906.1 4092325 R 76869 CDS YP_001669907.1 167034676 5871473 4093963..4094859 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3474 transcriptional regulator, LysR family; LysR family transcriptional regulator 4094859 5871473 PputGB1_3680 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669907.1 4093963 D 76869 CDS YP_001669908.1 167034677 5871474 4094981..4096231 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN3475 4-aminobutyrate aminotransferase, PLP-dependent; class III aminotransferase 4096231 5871474 PputGB1_3681 Pseudomonas putida GB-1 class III aminotransferase YP_001669908.1 4094981 D 76869 CDS YP_001669909.1 167034678 5871475 complement(4096235..4096537) 1 NC_010322.1 KEGG: pen:PSEEN3476 hypothetical protein; hypothetical protein 4096537 5871475 PputGB1_3682 Pseudomonas putida GB-1 hypothetical protein YP_001669909.1 4096235 R 76869 CDS YP_001669910.1 167034679 5871476 4096697..4097122 1 NC_010322.1 KEGG: pen:PSEEN3477 hypothetical protein; hypothetical protein 4097122 5871476 PputGB1_3683 Pseudomonas putida GB-1 hypothetical protein YP_001669910.1 4096697 D 76869 CDS YP_001669911.1 167034680 5871477 4097196..4099316 1 NC_010322.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4099316 5871477 PputGB1_3684 Pseudomonas putida GB-1 elongation factor G YP_001669911.1 4097196 D 76869 CDS YP_001669912.1 167034681 5871478 complement(4099389..4100831) 1 NC_010322.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN3479 probable sulfate transproter, MFS family; sulfate transporter 4100831 5871478 PputGB1_3685 Pseudomonas putida GB-1 sulfate transporter YP_001669912.1 4099389 R 76869 CDS YP_001669913.1 167034682 5871479 4101054..4101824 1 NC_010322.1 PFAM: NolW domain protein; KEGG: pen:PSEEN3480 type II secretion system protein D; signal peptide; NolW domain-containing protein 4101824 5871479 PputGB1_3686 Pseudomonas putida GB-1 NolW domain-containing protein YP_001669913.1 4101054 D 76869 CDS YP_001669914.1 167034683 5871480 4102282..4103607 1 NC_010322.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pen:PSEEN3481 isocitrate lyase; isocitrate lyase 4103607 5871480 PputGB1_3687 Pseudomonas putida GB-1 isocitrate lyase YP_001669914.1 4102282 D 76869 CDS YP_001669915.1 167034684 5871481 complement(4103845..4104108) 1 NC_010322.1 KEGG: pen:PSEEN3574 hypothetical protein; hypothetical protein 4104108 5871481 PputGB1_3688 Pseudomonas putida GB-1 hypothetical protein YP_001669915.1 4103845 R 76869 CDS YP_001669916.1 167034685 5871482 complement(4104264..4104506) 1 NC_010322.1 KEGG: pen:PSEEN5265 hypothetical protein; hypothetical protein 4104506 5871482 PputGB1_3689 Pseudomonas putida GB-1 hypothetical protein YP_001669916.1 4104264 R 76869 CDS YP_001669917.1 167034686 5871483 4105030..4105692 1 NC_010322.1 PFAM: YhhN family protein; KEGG: pen:PSEEN3482 hypothetical protein; hypothetical protein 4105692 5871483 PputGB1_3690 Pseudomonas putida GB-1 hypothetical protein YP_001669917.1 4105030 D 76869 CDS YP_001669918.1 167034687 5871484 4106074..4106487 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 4106487 5871484 PputGB1_3691 Pseudomonas putida GB-1 NADH dehydrogenase subunit A YP_001669918.1 4106074 D 76869 CDS YP_001669919.1 167034688 5871485 4106498..4107175 1 NC_010322.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 4107175 5871485 PputGB1_3692 Pseudomonas putida GB-1 NADH dehydrogenase subunit B YP_001669919.1 4106498 D 76869 CDS YP_001669920.1 167034689 5871486 4107255..4109036 1 NC_010322.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 4109036 5871486 PputGB1_3693 Pseudomonas putida GB-1 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001669920.1 4107255 D 76869 CDS YP_001669921.1 167034690 5871487 4109039..4109536 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 4109536 5871487 PputGB1_3694 Pseudomonas putida GB-1 NADH dehydrogenase subunit E YP_001669921.1 4109039 D 76869 CDS YP_001669922.1 167034691 5871488 4109533..4110897 1 NC_010322.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F 4110897 5871488 PputGB1_3695 Pseudomonas putida GB-1 NADH dehydrogenase subunit I F YP_001669922.1 4109533 D 76869 CDS YP_001669923.1 167034692 5871489 4111031..4113745 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 4113745 5871489 PputGB1_3696 Pseudomonas putida GB-1 NADH dehydrogenase subunit G YP_001669923.1 4111031 D 76869 CDS YP_001669924.1 167034693 5871490 4113742..4114749 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 4114749 5871490 PputGB1_3697 Pseudomonas putida GB-1 NADH dehydrogenase subunit H YP_001669924.1 4113742 D 76869 CDS YP_001669925.1 167034694 5871491 4114761..4115309 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 4115309 5871491 PputGB1_3698 Pseudomonas putida GB-1 NADH dehydrogenase subunit I YP_001669925.1 4114761 D 76869 CDS YP_001669926.1 167034695 5871492 4115320..4115820 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 4115820 5871492 PputGB1_3699 Pseudomonas putida GB-1 NADH dehydrogenase subunit J YP_001669926.1 4115320 D 76869 CDS YP_001669927.1 167034696 5871493 4115824..4116132 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 4116132 5871493 PputGB1_3700 Pseudomonas putida GB-1 NADH dehydrogenase subunit K YP_001669927.1 4115824 D 76869 CDS YP_001669928.1 167034697 5871494 4116129..4117982 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 4117982 5871494 PputGB1_3701 Pseudomonas putida GB-1 NADH dehydrogenase subunit L YP_001669928.1 4116129 D 76869 CDS YP_001669929.1 167034698 5871495 4118023..4119555 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 4119555 5871495 PputGB1_3702 Pseudomonas putida GB-1 NADH dehydrogenase subunit M YP_001669929.1 4118023 D 76869 CDS YP_001669930.1 167034699 5871496 4119563..4121032 1 NC_010322.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 4121032 5871496 PputGB1_3703 Pseudomonas putida GB-1 NADH dehydrogenase subunit N YP_001669930.1 4119563 D 76869 CDS YP_001669931.1 167034700 5871497 complement(4121122..4121385) 1 NC_010322.1 PFAM: transcriptional activator Ogr/delta; KEGG: csa:Csal_1361 hypothetical protein; transcriptional activator Ogr/delta 4121385 5871497 PputGB1_3704 Pseudomonas putida GB-1 transcriptional activator Ogr/delta YP_001669931.1 4121122 R 76869 CDS YP_001669932.1 167034701 5871498 4121565..4121945 1 NC_010322.1 PFAM: CI repressor; KEGG: vvy:VV2150 hypothetical protein; CI repressor 4121945 5871498 PputGB1_3705 Pseudomonas putida GB-1 CI repressor YP_001669932.1 4121565 D 76869 CDS YP_001669933.1 167034702 5871499 complement(4121942..4122304) 1 NC_010322.1 hypothetical protein 4122304 5871499 PputGB1_3706 Pseudomonas putida GB-1 hypothetical protein YP_001669933.1 4121942 R 76869 CDS YP_001669934.1 167034703 5871500 complement(4122297..4122644) 1 NC_010322.1 hypothetical protein 4122644 5871500 PputGB1_3707 Pseudomonas putida GB-1 hypothetical protein YP_001669934.1 4122297 R 76869 CDS YP_001669935.1 167034704 5871501 complement(4122654..4122902) 1 NC_010322.1 PFAM: regulatory protein LuxR; KEGG: pap:PSPA7_3898 transcriptional regulator LasR; LuxR family transcriptional regulator 4122902 5871501 PputGB1_3708 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001669935.1 4122654 R 76869 CDS YP_001669936.1 167034705 5871503 complement(4125278..4125838) 1 NC_010322.1 PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN3555 oxidoreductase, flavoprotein; NADPH-dependent FMN reductase 4125838 5871503 PputGB1_3710 Pseudomonas putida GB-1 NADPH-dependent FMN reductase YP_001669936.1 4125278 R 76869 CDS YP_001669937.1 167034706 5871504 4125995..4126213 1 NC_010322.1 KEGG: pen:PSEEN3556 hypothetical protein; hypothetical protein 4126213 5871504 PputGB1_3711 Pseudomonas putida GB-1 hypothetical protein YP_001669937.1 4125995 D 76869 CDS YP_001669938.1 167034707 5871505 complement(4126197..4128470) 1 NC_010322.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase; lysine decarboxylase 4128470 5871505 PputGB1_3712 Pseudomonas putida GB-1 lysine decarboxylase YP_001669938.1 4126197 R 76869 CDS YP_001669939.1 167034708 5871506 complement(4128539..4129297) 1 NC_010322.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 4129297 5871506 PputGB1_3713 Pseudomonas putida GB-1 DNA polymerase III subunit epsilon YP_001669939.1 4128539 R 76869 CDS YP_001669940.1 167034709 5871507 complement(4129349..4129795) 1 NC_010322.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 4129795 rnhA 5871507 rnhA Pseudomonas putida GB-1 ribonuclease H YP_001669940.1 4129349 R 76869 CDS YP_001669941.1 167034710 5871508 complement(4129811..4130584) 1 NC_010322.1 KEGG: pen:PSEEN3560 hypothetical protein; hypothetical protein 4130584 5871508 PputGB1_3715 Pseudomonas putida GB-1 hypothetical protein YP_001669941.1 4129811 R 76869 CDS YP_001669942.1 167034711 5871509 4130670..4131449 1 NC_010322.1 KEGG: pen:PSEEN3561 hydroxyacylglutathione hydrolase GloB; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 4131449 5871509 PputGB1_3716 Pseudomonas putida GB-1 hydroxyacylglutathione hydrolase YP_001669942.1 4130670 D 76869 CDS YP_001669943.1 167034712 5871510 4131550..4132980 1 NC_010322.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: pen:PSEEN3562 membrane-bound lytic murein transglycosylase D MltD; MltD domain-containing protein 4132980 5871510 PputGB1_3717 Pseudomonas putida GB-1 MltD domain-containing protein YP_001669943.1 4131550 D 76869 CDS YP_001669944.1 167034713 5871511 4133305..4135077 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3564 ABC transporter, periplamic binding protein; extracellular solute-binding protein 4135077 5871511 PputGB1_3718 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669944.1 4133305 D 76869 CDS YP_001669945.1 167034714 5871512 4135074..4136909 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3565 ABC transporter, periplamic binding protein; extracellular solute-binding protein 4136909 5871512 PputGB1_3719 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001669945.1 4135074 D 76869 CDS YP_001669946.1 167034715 5871513 4136911..4137984 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3566 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4137984 5871513 PputGB1_3720 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669946.1 4136911 D 76869 CDS YP_001669947.1 167034716 5871514 4137986..4139005 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3567 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4139005 5871514 PputGB1_3721 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001669947.1 4137986 D 76869 CDS YP_001669948.1 167034717 5871515 4139007..4140614 1 NC_010322.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3568 ABC transporter, ATP-binding protein; ABC transporter-like protein 4140614 5871515 PputGB1_3722 Pseudomonas putida GB-1 ABC transporter-like protein YP_001669948.1 4139007 D 76869 CDS YP_001669949.1 167034718 5871516 4140681..4141187 1 NC_010322.1 KEGG: pap:PSPA7_3407 hypothetical protein; hypothetical protein 4141187 5871516 PputGB1_3723 Pseudomonas putida GB-1 hypothetical protein YP_001669949.1 4140681 D 76869 CDS YP_001669950.1 167034719 5871517 4141252..4141818 1 NC_010322.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bam:Bamb_4377 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 4141818 5871517 PputGB1_3724 Pseudomonas putida GB-1 metal dependent phosphohydrolase YP_001669950.1 4141252 D 76869 CDS YP_001669951.1 167034720 5871518 4141960..4144890 1 NC_010322.1 PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: pen:PSEEN0260 aminotransferase, class III; hypothetical protein 4144890 5871518 PputGB1_3725 Pseudomonas putida GB-1 hypothetical protein YP_001669951.1 4141960 D 76869 CDS YP_001669952.1 167034721 5871519 complement(4144894..4146129) 1 NC_010322.1 PFAM: amine oxidase; KEGG: kra:Krad_1593 amine oxidase; amine oxidase 4146129 5871519 PputGB1_3726 Pseudomonas putida GB-1 amine oxidase YP_001669952.1 4144894 R 76869 CDS YP_001669953.1 167034722 5871520 4146207..4147112 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mfa:Mfla_0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 4147112 5871520 PputGB1_3727 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001669953.1 4146207 D 76869 CDS YP_001669954.1 167034723 5871521 4147168..4149033 1 NC_010322.1 KEGG: pae:PA3713 hypothetical protein; hypothetical protein 4149033 5871521 PputGB1_3728 Pseudomonas putida GB-1 hypothetical protein YP_001669954.1 4147168 D 76869 CDS YP_001669955.1 167034724 5871522 complement(4149156..4149851) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3605 transcriptional regulator of kdp operon; two component transcriptional regulator 4149851 5871522 PputGB1_3729 Pseudomonas putida GB-1 two component transcriptional regulator YP_001669955.1 4149156 R 76869 CDS YP_001669956.1 167034725 5871523 complement(4149848..4152502) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: pen:PSEEN3606 two-component sensor KdpD sensory kinase; osmosensitive K+ channel signal transduction histidine kinase 4152502 5871523 PputGB1_3730 Pseudomonas putida GB-1 osmosensitive K+ channel signal transduction histidine kinase YP_001669956.1 4149848 R 76869 CDS YP_001669957.1 167034726 5871524 complement(4152563..4153114) 1 NC_010322.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 4153114 5871524 PputGB1_3731 Pseudomonas putida GB-1 potassium-transporting ATPase subunit C YP_001669957.1 4152563 R 76869 CDS YP_001669958.1 167034727 5871525 complement(4153125..4155179) 1 NC_010322.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 4155179 5871525 PputGB1_3732 Pseudomonas putida GB-1 potassium-transporting ATPase subunit B YP_001669958.1 4153125 R 76869 CDS YP_001669959.1 167034728 5871526 complement(4155189..4156883) 1 NC_010322.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 4156883 5871526 PputGB1_3733 Pseudomonas putida GB-1 potassium-transporting ATPase subunit A YP_001669959.1 4155189 R 76869 CDS YP_001669960.1 167034729 5871527 complement(4157159..4158211) 1 NC_010322.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3611 hypothetical protein; hypothetical protein 4158211 5871527 PputGB1_3734 Pseudomonas putida GB-1 hypothetical protein YP_001669960.1 4157159 R 76869 CDS YP_001669961.1 167034730 5871528 complement(4158224..4159018) 1 NC_010322.1 KEGG: pen:PSEEN3612 hypothetical protein; hypothetical protein 4159018 5871528 PputGB1_3735 Pseudomonas putida GB-1 hypothetical protein YP_001669961.1 4158224 R 76869 CDS YP_001669962.1 167034731 5871529 complement(4159128..4159982) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3613 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4159982 5871529 PputGB1_3736 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001669962.1 4159128 R 76869 CDS YP_001669963.1 167034732 5871530 complement(4159979..4160767) 1 NC_010322.1 KEGG: pen:PSEEN3614 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 4160767 5871530 PputGB1_3737 Pseudomonas putida GB-1 alpha/beta fold family hydrolase YP_001669963.1 4159979 R 76869 CDS YP_001669964.1 167034733 5871531 complement(4160860..4161246) 1 NC_010322.1 KEGG: pen:PSEEN3615 hypothetical protein; hypothetical protein 4161246 5871531 PputGB1_3738 Pseudomonas putida GB-1 hypothetical protein YP_001669964.1 4160860 R 76869 CDS YP_001669965.1 167034734 5871532 complement(4161364..4161822) 1 NC_010322.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN3616 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 4161822 5871532 PputGB1_3739 Pseudomonas putida GB-1 phosphohistidine phosphatase, SixA YP_001669965.1 4161364 R 76869 CDS YP_001669966.1 167034735 5871533 complement(4161819..4162166) 1 NC_010322.1 KEGG: pen:PSEEN3617 hypothetical protein; hypothetical protein 4162166 5871533 PputGB1_3740 Pseudomonas putida GB-1 hypothetical protein YP_001669966.1 4161819 R 76869 CDS YP_001669967.1 167034736 5871534 complement(4162203..4163228) 1 NC_010322.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4163228 gpsA 5871534 gpsA Pseudomonas putida GB-1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001669967.1 4162203 R 76869 CDS YP_001669968.1 167034737 5871535 4163344..4165491 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3619 TonB-dependent receptor; TonB-dependent receptor plug 4165491 5871535 PputGB1_3742 Pseudomonas putida GB-1 TonB-dependent receptor plug YP_001669968.1 4163344 D 76869 CDS YP_001669969.1 167034738 5871536 4165491..4166381 1 NC_010322.1 KEGG: pen:PSEEN3620 hypothetical protein; hypothetical protein 4166381 5871536 PputGB1_3743 Pseudomonas putida GB-1 hypothetical protein YP_001669969.1 4165491 D 76869 CDS YP_001669970.1 167034739 5871537 4166378..4168309 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3621 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 4168309 5871537 PputGB1_3744 Pseudomonas putida GB-1 integral membrane sensor hybrid histidine kinase YP_001669970.1 4166378 D 76869 CDS YP_001669971.1 167034740 5871538 4168517..4169032 1 NC_010322.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 4169032 5871538 PputGB1_3745 Pseudomonas putida GB-1 3-hydroxydecanoyl-ACP dehydratase YP_001669971.1 4168517 D 76869 CDS YP_001669972.1 167034741 5871539 4169044..4170264 1 NC_010322.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4170264 5871539 PputGB1_3746 Pseudomonas putida GB-1 3-oxoacyl-ACP synthase YP_001669972.1 4169044 D 76869 CDS YP_001669973.1 167034742 5871540 complement(4170332..4171336) 1 NC_010322.1 PFAM: amidohydrolase 2; KEGG: pen:PSEEN3625 amidohydrolase; amidohydrolase 2 4171336 5871540 PputGB1_3747 Pseudomonas putida GB-1 amidohydrolase 2 YP_001669973.1 4170332 R 76869 CDS YP_001669974.1 167034743 5871541 4171454..4172317 1 NC_010322.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN3626 hypothetical protein; pirin domain-containing protein 4172317 5871541 PputGB1_3748 Pseudomonas putida GB-1 pirin domain-containing protein YP_001669974.1 4171454 D 76869 CDS YP_001669975.1 167034744 5871542 complement(4172350..4173075) 1 NC_010322.1 PFAM: dienelactone hydrolase; KEGG: pen:PSEEN3627 dienelactone hydrolase; dienelactone hydrolase 4173075 5871542 PputGB1_3749 Pseudomonas putida GB-1 dienelactone hydrolase YP_001669975.1 4172350 R 76869 CDS YP_001669976.1 167034745 5871543 complement(4173137..4175041) 1 NC_010322.1 molecular chaperone; heat shock protein 90 4175041 5871543 PputGB1_3750 Pseudomonas putida GB-1 heat shock protein 90 YP_001669976.1 4173137 R 76869 CDS YP_001669977.1 167034746 5871544 complement(4175112..4175594) 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3629 hypothetical protein; thioesterase superfamily protein 4175594 5871544 PputGB1_3751 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001669977.1 4175112 R 76869 CDS YP_001669978.1 167034747 5871545 complement(4175591..4176067) 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3630 hypothetical protein; thioesterase superfamily protein 4176067 5871545 PputGB1_3752 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001669978.1 4175591 R 76869 CDS YP_001669979.1 167034748 5871546 4176222..4176524 1 NC_010322.1 KEGG: pen:PSEEN3631 lipoprotein; lipoprotein 4176524 5871546 PputGB1_3753 Pseudomonas putida GB-1 lipoprotein YP_001669979.1 4176222 D 76869 CDS YP_001669980.1 167034749 5871547 complement(4176592..4177341) 1 NC_010322.1 PFAM: protein of unknown function DUF599; KEGG: pen:PSEEN3632 hypothetical protein; hypothetical protein 4177341 5871547 PputGB1_3754 Pseudomonas putida GB-1 hypothetical protein YP_001669980.1 4176592 R 76869 CDS YP_001669981.1 167034750 5871548 complement(4177558..4178871) 1 NC_010322.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: pen:PSEEN3633 branched chain amino acid transporter; branched-chain amino acid transport system II carrier protein 4178871 5871548 PputGB1_3755 Pseudomonas putida GB-1 branched-chain amino acid transport system II carrier protein YP_001669981.1 4177558 R 76869 CDS YP_001669982.1 167034751 5871549 complement(4179244..4180128) 1 NC_010322.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4180128 5871549 PputGB1_3756 Pseudomonas putida GB-1 succinyl-CoA synthetase subunit alpha YP_001669982.1 4179244 R 76869 CDS YP_001669983.1 167034752 5871550 complement(4180128..4181294) 1 NC_010322.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 4181294 sucC 5871550 sucC Pseudomonas putida GB-1 succinyl-CoA synthetase subunit beta YP_001669983.1 4180128 R 76869 CDS YP_001669984.1 167034753 5871551 complement(4181467..4182903) 1 NC_010322.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4182903 5871551 PputGB1_3758 Pseudomonas putida GB-1 dihydrolipoamide dehydrogenase YP_001669984.1 4181467 R 76869 CDS YP_001669985.1 167034754 5871552 complement(4182997..4184217) 1 NC_010322.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 4184217 5871552 PputGB1_3759 Pseudomonas putida GB-1 dihydrolipoamide succinyltransferase YP_001669985.1 4182997 R 76869 CDS YP_001669986.1 167034755 5871553 complement(4184260..4187091) 1 NC_010322.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 4187091 sucA 5871553 sucA Pseudomonas putida GB-1 2-oxoglutarate dehydrogenase E1 component YP_001669986.1 4184260 R 76869 CDS YP_001669987.1 167034756 5871554 complement(4187338..4188042) 1 NC_010322.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 4188042 sdhB 5871554 sdhB Pseudomonas putida GB-1 succinate dehydrogenase iron-sulfur subunit YP_001669987.1 4187338 R 76869 CDS YP_001669988.1 167034757 5871555 complement(4188054..4189826) 1 NC_010322.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 4189826 sdhA 5871555 sdhA Pseudomonas putida GB-1 succinate dehydrogenase flavoprotein subunit YP_001669988.1 4188054 R 76869 CDS YP_001669989.1 167034758 5871556 complement(4189830..4190198) 1 NC_010322.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pen:PSEEN3643 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein 4190198 5871556 PputGB1_3763 Pseudomonas putida GB-1 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001669989.1 4189830 R 76869 CDS YP_001669990.1 167034759 5871557 complement(4190192..4190578) 1 NC_010322.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: pen:PSEEN3644 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 4190578 5871557 PputGB1_3764 Pseudomonas putida GB-1 succinate dehydrogenase, cytochrome b556 subunit YP_001669990.1 4190192 R 76869 CDS YP_001669991.1 167034760 5871558 4190931..4192220 1 NC_010322.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 4192220 gltA 5871558 gltA Pseudomonas putida GB-1 type II citrate synthase YP_001669991.1 4190931 D 76869 CDS YP_001669992.1 167034761 5871559 complement(4192296..4192904) 1 NC_010322.1 PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN3647 hypothetical protein; lipid-binding START domain-containing protein 4192904 5871559 PputGB1_3766 Pseudomonas putida GB-1 lipid-binding START domain-containing protein YP_001669992.1 4192296 R 76869 CDS YP_001669993.1 167034762 5871560 complement(4192935..4193189) 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN3648 hypothetical protein; hypothetical protein 4193189 5871560 PputGB1_3767 Pseudomonas putida GB-1 hypothetical protein YP_001669993.1 4192935 R 76869 CDS YP_001669994.1 167034763 5871561 complement(4193318..4193800) 1 NC_010322.1 KEGG: pen:PSEEN3649 hypothetical protein; hypothetical protein 4193800 5871561 PputGB1_3768 Pseudomonas putida GB-1 hypothetical protein YP_001669994.1 4193318 R 76869 CDS YP_001669995.1 167034764 5871562 complement(4193865..4195307) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3650 transcriptional regulator, GntR family; transcriptional regulator 4195307 5871562 PputGB1_3769 Pseudomonas putida GB-1 transcriptional regulator YP_001669995.1 4193865 R 76869 CDS YP_001669996.1 167034765 5871563 complement(4195481..4196293) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3654 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein 4196293 5871563 PputGB1_3770 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001669996.1 4195481 R 76869 CDS YP_001669997.1 167034766 5871564 complement(4196290..4196643) 1 NC_010322.1 KEGG: pen:PSEEN3655 lipoprotein; lipoprotein 4196643 5871564 PputGB1_3771 Pseudomonas putida GB-1 lipoprotein YP_001669997.1 4196290 R 76869 CDS YP_001669998.1 167034767 5871565 complement(4196653..4197474) 1 NC_010322.1 KEGG: pen:PSEEN3656 hypothetical protein; hypothetical protein 4197474 5871565 PputGB1_3772 Pseudomonas putida GB-1 hypothetical protein YP_001669998.1 4196653 R 76869 CDS YP_001669999.1 167034768 5871566 complement(4197551..4198480) 1 NC_010322.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN3657 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 4198480 5871566 PputGB1_3773 Pseudomonas putida GB-1 electron transfer flavoprotein subunit alpha YP_001669999.1 4197551 R 76869 CDS YP_001670000.1 167034769 5871567 complement(4198481..4199230) 1 NC_010322.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN3658 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 4199230 5871567 PputGB1_3774 Pseudomonas putida GB-1 electron transfer flavoprotein alpha/beta-subunit YP_001670000.1 4198481 R 76869 CDS YP_001670001.1 167034770 5871568 4199781..4201445 1 NC_010322.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pen:PSEEN3660 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 4201445 5871568 PputGB1_3775 Pseudomonas putida GB-1 electron-transferring-flavoprotein dehydrogenase YP_001670001.1 4199781 D 76869 CDS YP_001670002.1 167034771 5871569 complement(4201516..4201917) 1 NC_010322.1 SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_4193 transcriptional regulator, XRE family; XRE family transcriptional regulator 4201917 5871569 PputGB1_3776 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001670002.1 4201516 R 76869 CDS YP_001670003.1 167034772 5871570 complement(4201920..4202216) 1 NC_010322.1 KEGG: bur:Bcep18194_B1537 hypothetical protein; hypothetical protein 4202216 5871570 PputGB1_3777 Pseudomonas putida GB-1 hypothetical protein YP_001670003.1 4201920 R 76869 CDS YP_001670004.1 167034773 5871571 complement(4202311..4203636) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3661 permease, MFS superfamily; major facilitator superfamily transporter 4203636 5871571 PputGB1_3778 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670004.1 4202311 R 76869 CDS YP_001670005.1 167034774 5871572 complement(4203709..4204188) 1 NC_010322.1 KEGG: pen:PSEEN3662 hypothetical protein; hypothetical protein 4204188 5871572 PputGB1_3779 Pseudomonas putida GB-1 hypothetical protein YP_001670005.1 4203709 R 76869 CDS YP_001670006.1 167034775 5871573 complement(4204358..4204834) 1 NC_010322.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor 4204834 5871573 PputGB1_3780 Pseudomonas putida GB-1 RNA polymerase sigma factor YP_001670006.1 4204358 R 76869 CDS YP_001670007.1 167034776 5871574 4205021..4206244 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3664 RND efflux membrane fusion protein; RND family efflux transporter MFP subunit 4206244 5871574 PputGB1_3781 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001670007.1 4205021 D 76869 CDS YP_001670008.1 167034777 5871575 4206245..4208209 1 NC_010322.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pen:PSEEN3665 efflux ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 4208209 5871575 PputGB1_3782 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670008.1 4206245 D 76869 CDS YP_001670009.1 167034778 5871576 4208213..4209628 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3666 multidrug efflux outer membrane protein, RND family; RND efflux system outer membrane lipoprotein 4209628 5871576 PputGB1_3783 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001670009.1 4208213 D 76869 CDS YP_001670010.1 167034779 5871577 complement(4209712..4211334) 1 NC_010322.1 KEGG: pfo:Pfl_1854 twin-arginine translocation pathway signal; hypothetical protein 4211334 5871577 PputGB1_3784 Pseudomonas putida GB-1 hypothetical protein YP_001670010.1 4209712 R 76869 CDS YP_001670011.1 167034780 5871578 4211522..4212868 1 NC_010322.1 PFAM: peptidase M19 renal dipeptidase; KEGG: psb:Psyr_1966 peptidase M19, renal dipeptidase; peptidase M19 4212868 5871578 PputGB1_3785 Pseudomonas putida GB-1 peptidase M19 YP_001670011.1 4211522 D 76869 CDS YP_001670012.1 167034781 5871579 4212886..4214178 1 NC_010322.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN3221 aminotransferase, class V; class V aminotransferase 4214178 5871579 PputGB1_3786 Pseudomonas putida GB-1 class V aminotransferase YP_001670012.1 4212886 D 76869 CDS YP_001670013.1 167034782 5871580 complement(4214218..4215186) 1 NC_010322.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN3228 lipase; alpha/beta hydrolase domain-containing protein 4215186 5871580 PputGB1_3787 Pseudomonas putida GB-1 alpha/beta hydrolase domain-containing protein YP_001670013.1 4214218 R 76869 CDS YP_001670014.1 167034783 5871581 4215328..4216449 1 NC_010322.1 SMART: transcription factor jumonji jmjC domain protein; KEGG: pfo:Pfl_1843 transcription factor jumonji, JmjC; transcription factor jumonji domain-containing protein 4216449 5871581 PputGB1_3788 Pseudomonas putida GB-1 transcription factor jumonji domain-containing protein YP_001670014.1 4215328 D 76869 CDS YP_001670015.1 167034784 5871582 4216523..4217491 1 NC_010322.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3668 siderophore interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 4217491 5871582 PputGB1_3789 Pseudomonas putida GB-1 FAD-binding 9 siderophore-interacting domain-containing protein YP_001670015.1 4216523 D 76869 CDS YP_001670016.1 167034785 5871583 complement(4217532..4218923) 1 NC_010322.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 4218923 5871583 PputGB1_3790 Pseudomonas putida GB-1 diaminobutyrate--2-oxoglutarate aminotransferase YP_001670016.1 4217532 R 76869 CDS YP_001670017.1 167034786 5871584 complement(4219138..4220460) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3670 sensor histidine kinase ArmS; integral membrane sensor signal transduction histidine kinase 4220460 5871584 PputGB1_3791 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670017.1 4219138 R 76869 CDS YP_001670018.1 167034787 5871585 complement(4220457..4221140) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3671 DNA-binding response regulator; two component transcriptional regulator 4221140 5871585 PputGB1_3792 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670018.1 4220457 R 76869 CDS YP_001670019.1 167034788 5871586 4221376..4222722 1 NC_010322.1 KEGG: psb:Psyr_0686 hypothetical protein; hypothetical protein 4222722 5871586 PputGB1_3793 Pseudomonas putida GB-1 hypothetical protein YP_001670019.1 4221376 D 76869 CDS YP_001670020.1 167034789 5871587 4222732..4223355 1 NC_010322.1 PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 4223355 5871587 PputGB1_3794 Pseudomonas putida GB-1 GAD-like domain-containing protein YP_001670020.1 4222732 D 76869 CDS YP_001670021.1 167034790 5871588 4223379..4224002 1 NC_010322.1 PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 4224002 5871588 PputGB1_3795 Pseudomonas putida GB-1 GAD-like domain-containing protein YP_001670021.1 4223379 D 76869 CDS YP_001670022.1 167034791 5871589 complement(4224018..4224575) 1 NC_010322.1 KEGG: pen:PSEEN2871 hypothetical protein; hypothetical protein 4224575 5871589 PputGB1_3796 Pseudomonas putida GB-1 hypothetical protein YP_001670022.1 4224018 R 76869 CDS YP_001670023.1 167034792 5871590 complement(4224581..4225552) 1 NC_010322.1 PFAM: protein of unknown function DUF182; KEGG: pau:PA14_61120 putative xanthine dehydrogenase accessory factor X; hypothetical protein 4225552 5871590 PputGB1_3797 Pseudomonas putida GB-1 hypothetical protein YP_001670023.1 4224581 R 76869 CDS YP_001670024.1 167034793 5871591 complement(4225556..4226767) 1 NC_010322.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2873 cytochrome c; gluconate 2-dehydrogenase 4226767 5871591 PputGB1_3798 Pseudomonas putida GB-1 gluconate 2-dehydrogenase YP_001670024.1 4225556 R 76869 CDS YP_001670025.1 167034794 5871592 complement(4226770..4227306) 1 NC_010322.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2874 oxidase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4227306 5871592 PputGB1_3799 Pseudomonas putida GB-1 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001670025.1 4226770 R 76869 CDS YP_001670026.1 167034795 5871593 complement(4227299..4230130) 1 NC_010322.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: pen:PSEEN2875 oxidase, large subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 4230130 5871593 PputGB1_3800 Pseudomonas putida GB-1 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001670026.1 4227299 R 76869 CDS YP_001670027.1 167034796 5871594 4230411..4232126 1 NC_010322.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: pen:PSEEN1818 thiol:disulfide interchange protein DsbD; protein-disulfide reductase 4232126 5871594 PputGB1_3801 Pseudomonas putida GB-1 protein-disulfide reductase YP_001670027.1 4230411 D 76869 CDS YP_001670028.1 167034797 5871595 4232126..4232962 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1817 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 4232962 5871595 PputGB1_3802 Pseudomonas putida GB-1 redoxin domain-containing protein YP_001670028.1 4232126 D 76869 CDS YP_001670029.1 167034798 5871596 4232964..4233722 1 NC_010322.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 4233722 dsbG 5871596 dsbG Pseudomonas putida GB-1 disulfide isomerase/thiol-disulfide oxidase YP_001670029.1 4232964 D 76869 CDS YP_001670030.1 167034799 5871597 complement(4233913..4234056) 1 NC_010322.1 KEGG: pen:PSEEN1815 pyoverdine synthetase A; hypothetical protein 4234056 5871597 PputGB1_3804 Pseudomonas putida GB-1 hypothetical protein YP_001670030.1 4233913 R 76869 CDS YP_001670031.1 167034800 5871598 4234652..4234930 1 NC_010322.1 PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 4234930 5871598 PputGB1_3805 Pseudomonas putida GB-1 transposase IS3/IS911 family protein YP_001670031.1 4234652 D 76869 CDS YP_001670032.1 167034801 5871599 4234921..4235802 1 NC_010322.1 PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 4235802 5871599 PputGB1_3806 Pseudomonas putida GB-1 integrase catalytic subunit YP_001670032.1 4234921 D 76869 CDS YP_001670033.1 167034802 5871600 4235972..4236715 1 NC_010322.1 hypothetical protein 4236715 5871600 PputGB1_3807 Pseudomonas putida GB-1 hypothetical protein YP_001670033.1 4235972 D 76869 CDS YP_001670034.1 167034803 5871601 4236715..4237416 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0457 ABC transporter related; ABC transporter-like protein 4237416 5871601 PputGB1_3808 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670034.1 4236715 D 76869 CDS YP_001670035.1 167034804 5871602 complement(4237459..4250412) 1 NC_010322.1 catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase 4250412 5871602 PputGB1_3809 Pseudomonas putida GB-1 peptide synthase YP_001670035.1 4237459 R 76869 CDS YP_001670036.1 167034805 5871603 4250718..4251248 1 NC_010322.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 4251248 5871603 PputGB1_3810 Pseudomonas putida GB-1 extracytoplasmic-function sigma-70 factor YP_001670036.1 4250718 D 76869 CDS YP_001670037.1 167034806 5871604 complement(4251302..4252315) 1 NC_010322.1 KEGG: pen:PSEEN1813 siderophore biosynthesis protein; siderophore biosynthesis protein 4252315 5871604 PputGB1_3811 Pseudomonas putida GB-1 siderophore biosynthesis protein YP_001670037.1 4251302 R 76869 CDS YP_001670038.1 167034807 5871605 complement(4252379..4253179) 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1812 periplasmic binding protein; extracellular solute-binding protein 4253179 5871605 PputGB1_3812 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001670038.1 4252379 R 76869 CDS YP_001670039.1 167034808 5871606 4253351..4253902 1 NC_010322.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN1811 exonuclease; exonuclease RNase T and DNA polymerase III 4253902 5871606 PputGB1_3813 Pseudomonas putida GB-1 exonuclease RNase T and DNA polymerase III YP_001670039.1 4253351 D 76869 CDS YP_001670040.1 167034809 5871607 4253976..4254260 1 NC_010322.1 PFAM: protein of unknown function DUF1255; KEGG: pen:PSEEN1810 hypothetical protein; hypothetical protein 4254260 5871607 PputGB1_3814 Pseudomonas putida GB-1 hypothetical protein YP_001670040.1 4253976 D 76869 CDS YP_001670041.1 167034810 5871608 complement(4254403..4255098) 1 NC_010322.1 KEGG: pen:PSEEN1809 hypothetical protein; hypothetical protein 4255098 5871608 PputGB1_3815 Pseudomonas putida GB-1 hypothetical protein YP_001670041.1 4254403 R 76869 CDS YP_001670042.1 167034811 5871609 4255149..4256573 1 NC_010322.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4256573 5871609 PputGB1_3816 Pseudomonas putida GB-1 cbb3-type cytochrome c oxidase subunit I YP_001670042.1 4255149 D 76869 CDS YP_001670043.1 167034812 5871610 4256587..4257195 1 NC_010322.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4257195 5871610 PputGB1_3817 Pseudomonas putida GB-1 cbb3-type cytochrome c oxidase subunit II YP_001670043.1 4256587 D 76869 CDS YP_001670044.1 167034813 5871611 4257201..4257395 1 NC_010322.1 KEGG: pen:PSEEN1805 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 4257395 5871611 PputGB1_3818 Pseudomonas putida GB-1 cytochrome c oxidase, cbb3-type, CcoQ subunit YP_001670044.1 4257201 D 76869 CDS YP_001670045.1 167034814 5871612 4257392..4258333 1 NC_010322.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1804 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 4258333 5871612 PputGB1_3819 Pseudomonas putida GB-1 cytochrome c oxidase, cbb3-type subunit III YP_001670045.1 4257392 D 76869 CDS YP_001670046.1 167034815 5871613 4258695..4260137 1 NC_010322.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4260137 5871613 PputGB1_3820 Pseudomonas putida GB-1 cbb3-type cytochrome c oxidase subunit I YP_001670046.1 4258695 D 76869 CDS YP_001670047.1 167034816 5871614 4260137..4260745 1 NC_010322.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4260745 5871614 PputGB1_3821 Pseudomonas putida GB-1 cbb3-type cytochrome c oxidase subunit II YP_001670047.1 4260137 D 76869 CDS YP_001670048.1 167034817 5871615 4260751..4260948 1 NC_010322.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: pen:PSEEN1800 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 4260948 5871615 PputGB1_3822 Pseudomonas putida GB-1 cbb3-type cytochrome oxidase subunit YP_001670048.1 4260751 D 76869 CDS YP_001670049.1 167034818 5871616 4260945..4261922 1 NC_010322.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1799 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 4261922 5871616 PputGB1_3823 Pseudomonas putida GB-1 cytochrome c oxidase, cbb3-type subunit III YP_001670049.1 4260945 D 76869 CDS YP_001670050.1 167034819 5871617 4262177..4263595 1 NC_010322.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN1798 oxidase with iron-sulfur cluster; cytochrome c oxidase accessory protein CcoG 4263595 5871617 PputGB1_3824 Pseudomonas putida GB-1 cytochrome c oxidase accessory protein CcoG YP_001670050.1 4262177 D 76869 CDS YP_001670051.1 167034820 5871618 4263611..4264138 1 NC_010322.1 KEGG: pen:PSEEN1797 hypothetical protein; hypothetical protein 4264138 5871618 PputGB1_3825 Pseudomonas putida GB-1 hypothetical protein YP_001670051.1 4263611 D 76869 CDS YP_001670052.1 167034821 5871619 4264309..4266783 1 NC_010322.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN1796 copper-transporting P-type ATPase CcoI; heavy metal translocating P-type ATPase 4266783 5871619 PputGB1_3826 Pseudomonas putida GB-1 heavy metal translocating P-type ATPase YP_001670052.1 4264309 D 76869 CDS YP_001670053.1 167034822 5871620 4266762..4266977 1 NC_010322.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pen:PSEEN1795 cytochrome oxidase maturation protein, cbb3-type CcoS; cbb3-type cytochrome oxidase maturation protein 4266977 5871620 PputGB1_3827 Pseudomonas putida GB-1 cbb3-type cytochrome oxidase maturation protein YP_001670053.1 4266762 D 76869 CDS YP_001670054.1 167034823 5871621 4266970..4267653 1 NC_010322.1 KEGG: pen:PSEEN1794 hypothetical protein; hypothetical protein 4267653 5871621 PputGB1_3828 Pseudomonas putida GB-1 hypothetical protein YP_001670054.1 4266970 D 76869 CDS YP_001670055.1 167034824 5871622 4267759..4269141 1 NC_010322.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4269141 5871622 PputGB1_3829 Pseudomonas putida GB-1 coproporphyrinogen III oxidase YP_001670055.1 4267759 D 76869 CDS YP_001670056.1 167034825 5871623 4269328..4270062 1 NC_010322.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pen:PSEEN1792 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 4270062 5871623 PputGB1_3830 Pseudomonas putida GB-1 Crp/FNR family transcriptional regulator YP_001670056.1 4269328 D 76869 CDS YP_001670057.1 167034826 5871624 4270118..4270666 1 NC_010322.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4270666 5871624 PputGB1_3831 Pseudomonas putida GB-1 adenine phosphoribosyltransferase YP_001670057.1 4270118 D 76869 CDS YP_001670058.1 167034827 5871625 complement(4270794..4271396) 1 NC_010322.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 4271396 recR 5871625 recR Pseudomonas putida GB-1 recombination protein RecR YP_001670058.1 4270794 R 76869 CDS YP_001670059.1 167034828 5871626 complement(4271541..4271876) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1789 hypothetical protein; hypothetical protein 4271876 5871626 PputGB1_3833 Pseudomonas putida GB-1 hypothetical protein YP_001670059.1 4271541 R 76869 CDS YP_001670060.1 167034829 5871627 complement(4271940..4274003) 1 NC_010322.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 4274003 5871627 PputGB1_3834 Pseudomonas putida GB-1 DNA polymerase III subunits gamma and tau YP_001670060.1 4271940 R 76869 CDS YP_001670061.1 167034830 5871628 4274128..4274892 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1787 hypothetical protein; extracellular solute-binding protein 4274892 5871628 PputGB1_3835 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001670061.1 4274128 D 76869 CDS YP_001670062.1 167034831 5871629 complement(4274990..4275478) 1 NC_010322.1 KEGG: pen:PSEEN1786 hypothetical protein; hypothetical protein 4275478 5871629 PputGB1_3836 Pseudomonas putida GB-1 hypothetical protein YP_001670062.1 4274990 R 76869 CDS YP_001670063.1 167034832 5871630 4275561..4275980 1 NC_010322.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN1785 transcriptional regulator; MerR family transcriptional regulator 4275980 5871630 PputGB1_3837 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001670063.1 4275561 D 76869 CDS YP_001670064.1 167034833 5871632 complement(4276283..4278613) 1 NC_010322.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 4278613 ligA 5871632 ligA Pseudomonas putida GB-1 NAD-dependent DNA ligase LigA YP_001670064.1 4276283 R 76869 CDS YP_001670065.1 167034834 5871633 complement(4278713..4279603) 1 NC_010322.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 4279603 zipA 5871633 zipA Pseudomonas putida GB-1 cell division protein ZipA YP_001670065.1 4278713 R 76869 CDS YP_001670066.1 167034835 5871634 complement(4279809..4283297) 1 NC_010322.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pen:PSEEN1767 chromosome segregation SMC protein; chromosome segregation protein SMC 4283297 5871634 PputGB1_3840 Pseudomonas putida GB-1 chromosome segregation protein SMC YP_001670066.1 4279809 R 76869 CDS YP_001670067.1 167034836 5871635 complement(4283301..4283960) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; KEGG: pen:PSEEN1766 transcriptional regulator (GntR-family); GntR family transcriptional regulator 4283960 5871635 PputGB1_3841 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670067.1 4283301 R 76869 CDS YP_001670068.1 167034837 5871636 4284229..4285683 1 NC_010322.1 TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pen:PSEEN1765 xanthine dehydrogenase, small subunit XhdA; xanthine dehydrogenase small subunit 4285683 5871636 PputGB1_3842 Pseudomonas putida GB-1 xanthine dehydrogenase small subunit YP_001670068.1 4284229 D 76869 CDS YP_001670069.1 167034838 5871637 4285676..4288075 1 NC_010322.1 KEGG: pen:PSEEN1764 xanthine dehydrogenase, large subunit XhdB; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; xanthine dehydrogenase molybdopterin binding subunit 4288075 5871637 PputGB1_3843 Pseudomonas putida GB-1 xanthine dehydrogenase molybdopterin binding subunit YP_001670069.1 4285676 D 76869 CDS YP_001670070.1 167034839 5871638 4288239..4289084 1 NC_010322.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN1763 xanthine dehydrogenase accessory factor XdhC; xanthine dehydrogenase accessory protein XdhC 4289084 5871638 PputGB1_3844 Pseudomonas putida GB-1 xanthine dehydrogenase accessory protein XdhC YP_001670070.1 4288239 D 76869 CDS YP_001670071.1 167034840 5871639 4289095..4290399 1 NC_010322.1 Catalyzes the deamination of guanine; guanine deaminase 4290399 5871639 PputGB1_3845 Pseudomonas putida GB-1 guanine deaminase YP_001670071.1 4289095 D 76869 CDS YP_001670072.1 167034841 5871640 complement(4290396..4291094) 1 NC_010322.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 4291094 5871640 PputGB1_3846 Pseudomonas putida GB-1 aquaporin Z YP_001670072.1 4290396 R 76869 CDS YP_001670073.1 167034842 5871641 complement(4291246..4292001) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1760 transcriptional regulator, GntR family; GntR family transcriptional regulator 4292001 5871641 PputGB1_3847 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670073.1 4291246 R 76869 CDS YP_001670074.1 167034843 5871642 4292286..4293635 1 NC_010322.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN1759 transporter; xanthine/uracil/vitamin C permease 4293635 5871642 PputGB1_3848 Pseudomonas putida GB-1 xanthine/uracil/vitamin C permease YP_001670074.1 4292286 D 76869 CDS YP_001670075.1 167034844 5871643 complement(4294086..4294439) 1 NC_010322.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: pen:PSEEN1686 transthyretin; hydroxyisourate hydrolase 4294439 5871643 PputGB1_3849 Pseudomonas putida GB-1 hydroxyisourate hydrolase YP_001670075.1 4294086 R 76869 CDS YP_001670076.1 167034845 5871644 4294839..4295765 1 NC_010322.1 KEGG: pen:PSEEN1685 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 4295765 5871644 PputGB1_3850 Pseudomonas putida GB-1 urate catabolism protein YP_001670076.1 4294839 D 76869 CDS YP_001670077.1 167034846 5871645 4295765..4296280 1 NC_010322.1 KEGG: pen:PSEEN1684 hypothetical protein; hypothetical protein 4296280 5871645 PputGB1_3851 Pseudomonas putida GB-1 hypothetical protein YP_001670077.1 4295765 D 76869 CDS YP_001670078.1 167034847 5871646 4296330..4296833 1 NC_010322.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4296833 5871646 PputGB1_3852 Pseudomonas putida GB-1 ureidoglycolate hydrolase YP_001670078.1 4296330 D 76869 CDS YP_001670079.1 167034848 5871647 4296878..4298206 1 NC_010322.1 PFAM: protein of unknown function DUF989; KEGG: pen:PSEEN1682 hypothetical protein; hypothetical protein 4298206 5871647 PputGB1_3853 Pseudomonas putida GB-1 hypothetical protein YP_001670079.1 4296878 D 76869 CDS YP_001670080.1 167034849 5871648 4298365..4299720 1 NC_010322.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1681 xanthine/uracil permease; xanthine permease 4299720 5871648 PputGB1_3854 Pseudomonas putida GB-1 xanthine permease YP_001670080.1 4298365 D 76869 CDS YP_001670081.1 167034850 5871649 4299792..4300646 1 NC_010322.1 KEGG: pen:PSEEN1680 hypothetical protein; hypothetical protein 4300646 5871649 PputGB1_3855 Pseudomonas putida GB-1 hypothetical protein YP_001670081.1 4299792 D 76869 CDS YP_001670082.1 167034851 5871650 4301002..4301784 1 NC_010322.1 KEGG: pen:PSEEN1679 hypothetical protein; hypothetical protein 4301784 5871650 PputGB1_3856 Pseudomonas putida GB-1 hypothetical protein YP_001670082.1 4301002 D 76869 CDS YP_001670083.1 167034852 5871651 complement(4301852..4302166) 1 NC_010322.1 KEGG: pen:PSEEN1678 hypothetical protein; hypothetical protein 4302166 5871651 PputGB1_3857 Pseudomonas putida GB-1 hypothetical protein YP_001670083.1 4301852 R 76869 CDS YP_001670084.1 167034853 5871652 4302319..4304262 1 NC_010322.1 PFAM: sulfatase; KEGG: pen:PSEEN1677 sulfatase; sulfatase 4304262 5871652 PputGB1_3858 Pseudomonas putida GB-1 sulfatase YP_001670084.1 4302319 D 76869 CDS YP_001670085.1 167034854 5871653 complement(4304316..4305230) 1 NC_010322.1 PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein 4305230 5871653 PputGB1_3859 Pseudomonas putida GB-1 hypothetical protein YP_001670085.1 4304316 R 76869 CDS YP_001670086.1 167034855 5871654 4305363..4305974 1 NC_010322.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN1675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4305974 5871654 PputGB1_3860 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001670086.1 4305363 D 76869 CDS YP_001670087.1 167034856 5871655 complement(4306105..4306545) 1 NC_010322.1 PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN1674 hypothetical protein; hypothetical protein 4306545 5871655 PputGB1_3861 Pseudomonas putida GB-1 hypothetical protein YP_001670087.1 4306105 R 76869 CDS YP_001670088.1 167034857 5871656 4306803..4308578 1 NC_010322.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4308578 5871656 PputGB1_3862 Pseudomonas putida GB-1 glyoxylate carboligase YP_001670088.1 4306803 D 76869 CDS YP_001670089.1 167034858 5871657 4308633..4309415 1 NC_010322.1 KEGG: pen:PSEEN1671 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 4309415 5871657 PputGB1_3863 Pseudomonas putida GB-1 hydroxypyruvate isomerase YP_001670089.1 4308633 D 76869 CDS YP_001670090.1 167034859 5871658 4309469..4310362 1 NC_010322.1 KEGG: pen:PSEEN1670 tartronic semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 4310362 5871658 PputGB1_3864 Pseudomonas putida GB-1 2-hydroxy-3-oxopropionate reductase YP_001670090.1 4309469 D 76869 CDS YP_001670091.1 167034860 5871659 4310622..4311896 1 NC_010322.1 PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase 4311896 5871659 PputGB1_3865 Pseudomonas putida GB-1 hydroxypyruvate reductase YP_001670091.1 4310622 D 76869 CDS YP_001670092.1 167034861 5871660 4311893..4313308 1 NC_010322.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4313308 5871660 PputGB1_3866 Pseudomonas putida GB-1 pyruvate kinase YP_001670092.1 4311893 D 76869 CDS YP_001670093.1 167034862 5871661 4313492..4314370 1 NC_010322.1 PFAM: Urea transporter; KEGG: pen:PSEEN1667 transporter; Urea transporter 4314370 5871661 PputGB1_3867 Pseudomonas putida GB-1 Urea transporter YP_001670093.1 4313492 D 76869 CDS YP_001670094.1 167034863 5871662 complement(4314746..4315114) 1 NC_010322.1 KEGG: psp:PSPPH_1154 YD repeat protein; hypothetical protein 4315114 5871662 PputGB1_3868 Pseudomonas putida GB-1 hypothetical protein YP_001670094.1 4314746 R 76869 CDS YP_001670095.1 167034864 5871663 4315269..4316090 1 NC_010322.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pen:PSEEN1666 cation transporter, VIC family; Ion transport protein 4316090 5871663 PputGB1_3869 Pseudomonas putida GB-1 Ion transport protein YP_001670095.1 4315269 D 76869 CDS YP_001670096.1 167034865 5871664 4316207..4317205 1 NC_010322.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1665 periplasmic thiosulfate-binding protein; sulfate ABC transporter substrate-binding protein 4317205 5871664 PputGB1_3870 Pseudomonas putida GB-1 sulfate ABC transporter substrate-binding protein YP_001670096.1 4316207 D 76869 CDS YP_001670097.1 167034866 5871665 4317351..4319375 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pfo:Pfl_5033 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4319375 5871665 PputGB1_3871 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001670097.1 4317351 D 76869 CDS YP_001670098.1 167034867 5871666 complement(4319434..4320360) 1 NC_010322.1 KEGG: pen:PSEEN1664 hypothetical protein; hypothetical protein 4320360 5871666 PputGB1_3872 Pseudomonas putida GB-1 hypothetical protein YP_001670098.1 4319434 R 76869 CDS YP_001670099.1 167034868 5871667 complement(4320396..4321292) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1663 hypothetical protein; hypothetical protein 4321292 5871667 PputGB1_3873 Pseudomonas putida GB-1 hypothetical protein YP_001670099.1 4320396 R 76869 CDS YP_001670100.1 167034869 5871668 4321426..4321863 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1662 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4321863 5871668 PputGB1_3874 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001670100.1 4321426 D 76869 CDS YP_001670101.1 167034870 5871669 4322361..4323893 1 NC_010322.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN1660 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4323893 5871669 PputGB1_3875 Pseudomonas putida GB-1 cytosine/purines uracil thiamine allantoin permease YP_001670101.1 4322361 D 76869 CDS YP_001670102.1 167034871 5871670 4323910..4324638 1 NC_010322.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: pen:PSEEN1659 hydantoin racemase; Asp/Glu/hydantoin racemase 4324638 5871670 PputGB1_3876 Pseudomonas putida GB-1 Asp/Glu/hydantoin racemase YP_001670102.1 4323910 D 76869 CDS YP_001670103.1 167034872 5871671 complement(4324694..4325890) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1658 D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase 4325890 5871671 PputGB1_3877 Pseudomonas putida GB-1 D-amino-acid dehydrogenase YP_001670103.1 4324694 R 76869 CDS YP_001670104.1 167034873 5871672 complement(4325935..4326597) 1 NC_010322.1 KEGG: pen:PSEEN1657 hypothetical protein; hypothetical protein 4326597 5871672 PputGB1_3878 Pseudomonas putida GB-1 hypothetical protein YP_001670104.1 4325935 R 76869 CDS YP_001670105.1 167034874 5871673 complement(4326830..4327168) 1 NC_010322.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1656 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 4327168 5871673 PputGB1_3879 Pseudomonas putida GB-1 FKBP-type peptidylprolyl isomerase YP_001670105.1 4326830 R 76869 CDS YP_001670106.1 167034875 5871674 complement(4327207..4328148) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1705 putative 10 TMS drug/metabolite exporter, DME family, DMT super family; hypothetical protein 4328148 5871674 PputGB1_3880 Pseudomonas putida GB-1 hypothetical protein YP_001670106.1 4327207 R 76869 CDS YP_001670107.1 167034876 5871675 4328304..4329197 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5201 transcriptional regulator, LysR family; LysR family transcriptional regulator 4329197 5871675 PputGB1_3881 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670107.1 4328304 D 76869 CDS YP_001670108.1 167034877 5871676 complement(4329199..4329606) 1 NC_010322.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN1655 hypothetical protein; glutathione-dependent formaldehyde-activating protein 4329606 5871676 PputGB1_3882 Pseudomonas putida GB-1 glutathione-dependent formaldehyde-activating protein YP_001670108.1 4329199 R 76869 CDS YP_001670109.1 167034878 5871677 complement(4329683..4330471) 1 NC_010322.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pen:PSEEN3771 phenazine biosynthesis protein, PhzC/F family; PhzF family phenazine biosynthesis protein 4330471 5871677 PputGB1_3883 Pseudomonas putida GB-1 PhzF family phenazine biosynthesis protein YP_001670109.1 4329683 R 76869 CDS YP_001670110.1 167034879 5871678 complement(4330522..4331460) 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN3772 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4331460 5871678 PputGB1_3884 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001670110.1 4330522 R 76869 CDS YP_001670111.1 167034880 5871679 4331780..4332679 1 NC_010322.1 KEGG: pfo:Pfl_2415 hypothetical protein; hypothetical protein 4332679 5871679 PputGB1_3885 Pseudomonas putida GB-1 hypothetical protein YP_001670111.1 4331780 D 76869 CDS YP_001670112.1 167034881 5871680 4332841..4333770 1 NC_010322.1 KEGG: pfo:Pfl_2415 hypothetical protein; hypothetical protein 4333770 5871680 PputGB1_3886 Pseudomonas putida GB-1 hypothetical protein YP_001670112.1 4332841 D 76869 CDS YP_001670113.1 167034882 5871681 complement(4333856..4334272) 1 NC_010322.1 KEGG: pen:PSEEN3773 hypothetical protein; hypothetical protein 4334272 5871681 PputGB1_3887 Pseudomonas putida GB-1 hypothetical protein YP_001670113.1 4333856 R 76869 CDS YP_001670114.1 167034883 5871682 complement(4334285..4335481) 1 NC_010322.1 KEGG: pen:PSEEN3774 cytochrome c-type biogenesis protein CycH; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; cytochrome c-type biogenesis protein CcmI 4335481 5871682 PputGB1_3888 Pseudomonas putida GB-1 cytochrome c-type biogenesis protein CcmI YP_001670114.1 4334285 R 76869 CDS YP_001670115.1 167034884 5871683 complement(4335474..4335950) 1 NC_010322.1 PFAM: cytochrome C biogenesis protein; KEGG: pen:PSEEN3775 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein 4335950 5871683 PputGB1_3889 Pseudomonas putida GB-1 cytochrome C biogenesis protein YP_001670115.1 4335474 R 76869 CDS YP_001670116.1 167034885 5871684 complement(4335947..4336483) 1 NC_010322.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN3776 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 4336483 5871684 PputGB1_3890 Pseudomonas putida GB-1 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001670116.1 4335947 R 76869 CDS YP_001670117.1 167034886 5871685 complement(4336480..4338468) 1 NC_010322.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3777 periplasmic cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 4338468 5871685 PputGB1_3891 Pseudomonas putida GB-1 cytochrome c-type biogenesis protein CcmF YP_001670117.1 4336480 R 76869 CDS YP_001670118.1 167034887 5871686 complement(4338465..4338920) 1 NC_010322.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4338920 5871686 PputGB1_3892 Pseudomonas putida GB-1 cytochrome c-type biogenesis protein CcmE YP_001670118.1 4338465 R 76869 CDS YP_001670119.1 167034888 5871687 complement(4338917..4339093) 1 NC_010322.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: pen:PSEEN3779 cytochrome c-type biogenesis protein CcmD; heme exporter protein CcmD 4339093 5871687 PputGB1_3893 Pseudomonas putida GB-1 heme exporter protein CcmD YP_001670119.1 4338917 R 76869 CDS YP_001670120.1 167034889 5871688 complement(4339090..4339857) 1 NC_010322.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3780 cytochrome c-type biogenesis protein CcmC; heme ABC export system, permease protein; heme exporter protein CcmC 4339857 5871688 PputGB1_3894 Pseudomonas putida GB-1 heme exporter protein CcmC YP_001670120.1 4339090 R 76869 CDS YP_001670121.1 167034890 5871689 complement(4339904..4340572) 1 NC_010322.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pen:PSEEN3781 heme ABC export system, permease protein CcmB; heme exporter protein CcmB 4340572 5871689 PputGB1_3895 Pseudomonas putida GB-1 heme exporter protein CcmB YP_001670121.1 4339904 R 76869 CDS YP_001670122.1 167034891 5871690 complement(4340569..4341201) 1 NC_010322.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4341201 5871690 PputGB1_3896 Pseudomonas putida GB-1 cytochrome c biogenesis protein CcmA YP_001670122.1 4340569 R 76869 CDS YP_001670123.1 167034892 5871691 4341370..4342926 1 NC_010322.1 KEGG: pen:PSEEN3783 hypothetical protein; hypothetical protein 4342926 5871691 PputGB1_3897 Pseudomonas putida GB-1 hypothetical protein YP_001670123.1 4341370 D 76869 CDS YP_001670124.1 167034893 5871692 4342923..4343261 1 NC_010322.1 KEGG: pen:PSEEN3784 hypothetical protein; hypothetical protein 4343261 5871692 PputGB1_3898 Pseudomonas putida GB-1 hypothetical protein YP_001670124.1 4342923 D 76869 CDS YP_001670125.1 167034894 5871693 4343343..4346096 1 NC_010322.1 KEGG: pen:PSEEN3785 hypothetical protein; hypothetical protein 4346096 5871693 PputGB1_3899 Pseudomonas putida GB-1 hypothetical protein YP_001670125.1 4343343 D 76869 CDS YP_001670126.1 167034895 5871694 complement(4346152..4346547) 1 NC_010322.1 KEGG: pen:PSEEN3786 hypothetical protein; hypothetical protein 4346547 5871694 PputGB1_3900 Pseudomonas putida GB-1 hypothetical protein YP_001670126.1 4346152 R 76869 CDS YP_001670127.1 167034896 5871695 complement(4346549..4347028) 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN3787 purine-binding chemotaxis protein CheW; CheW protein 4347028 5871695 PputGB1_3901 Pseudomonas putida GB-1 CheW protein YP_001670127.1 4346549 R 76869 CDS YP_001670128.1 167034897 5871696 complement(4347070..4347960) 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN3788 hypothetical protein; CheW protein 4347960 5871696 PputGB1_3902 Pseudomonas putida GB-1 CheW protein YP_001670128.1 4347070 R 76869 CDS YP_001670129.1 167034898 5871697 complement(4347960..4348748) 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3789 ATPase, ParA family protein; cobyrinic acid ac-diamide synthase 4348748 5871697 PputGB1_3903 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001670129.1 4347960 R 76869 CDS YP_001670130.1 167034899 5871698 complement(4348849..4349706) 1 NC_010322.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 4349706 5871698 PputGB1_3904 Pseudomonas putida GB-1 flagellar motor protein MotD YP_001670130.1 4348849 R 76869 CDS YP_001670131.1 167034900 5871699 complement(4349709..4350449) 1 NC_010322.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 4350449 motC 5871699 motC Pseudomonas putida GB-1 flagellar motor protein YP_001670131.1 4349709 R 76869 CDS YP_001670132.1 167034901 5871700 complement(4350449..4351579) 1 NC_010322.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4351579 5871700 PputGB1_3906 Pseudomonas putida GB-1 chemotaxis-specific methylesterase YP_001670132.1 4350449 R 76869 CDS YP_001670133.1 167034902 5871701 complement(4351626..4353857) 1 NC_010322.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: pen:PSEEN3793 chemotaxis histidine kinase CheA; CheA signal transduction histidine kinase 4353857 5871701 PputGB1_3907 Pseudomonas putida GB-1 CheA signal transduction histidine kinase YP_001670133.1 4351626 R 76869 CDS YP_001670134.1 167034903 5871702 complement(4353870..4354658) 1 NC_010322.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: pen:PSEEN3794 chemotactic response, CheY protein phophatase; chemotaxis phosphatase, CheZ 4354658 5871702 PputGB1_3908 Pseudomonas putida GB-1 chemotaxis phosphatase, CheZ YP_001670134.1 4353870 R 76869 CDS YP_001670135.1 167034904 5871703 complement(4354679..4355065) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3795 chemotaxis protein CheY; response regulator receiver protein 4355065 5871703 PputGB1_3909 Pseudomonas putida GB-1 response regulator receiver protein YP_001670135.1 4354679 R 76869 CDS YP_001670136.1 167034905 5871704 complement(4355161..4355901) 1 NC_010322.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 4355901 fliA 5871704 fliA Pseudomonas putida GB-1 flagellar biosynthesis sigma factor YP_001670136.1 4355161 R 76869 CDS YP_001670137.1 167034906 5871705 complement(4355898..4356731) 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3797 flagellar number regulator FleN; cobyrinic acid ac-diamide synthase 4356731 5871705 PputGB1_3911 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001670137.1 4355898 R 76869 CDS YP_001670138.1 167034907 5871706 complement(4356825..4358132) 1 NC_010322.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 4358132 flhF 5871706 flhF Pseudomonas putida GB-1 flagellar biosynthesis regulator FlhF YP_001670138.1 4356825 R 76869 CDS YP_001670139.1 167034908 5871707 complement(4358144..4360273) 1 NC_010322.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 4360273 flhA 5871707 flhA Pseudomonas putida GB-1 flagellar biosynthesis protein FlhA YP_001670139.1 4358144 R 76869 CDS YP_001670140.1 167034909 5871708 complement(4360415..4361557) 1 NC_010322.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 4361557 flhB 5871708 flhB Pseudomonas putida GB-1 flagellar biosynthesis protein FlhB YP_001670140.1 4360415 R 76869 CDS YP_001670141.1 167034910 5871709 complement(4361560..4362336) 1 NC_010322.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 4362336 fliR 5871709 fliR Pseudomonas putida GB-1 flagellar biosynthesis protein FliR YP_001670141.1 4361560 R 76869 CDS YP_001670142.1 167034911 5871710 complement(4362344..4362613) 1 NC_010322.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 4362613 fliQ 5871710 fliQ Pseudomonas putida GB-1 flagellar biosynthesis protein FliQ YP_001670142.1 4362344 R 76869 CDS YP_001670143.1 167034912 5871711 complement(4362635..4363390) 1 NC_010322.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4363390 fliP 5871711 fliP Pseudomonas putida GB-1 flagellar biosynthesis protein FliP YP_001670143.1 4362635 R 76869 CDS YP_001670144.1 167034913 5871712 complement(4363390..4363824) 1 NC_010322.1 PFAM: flagellar biosynthesis protein FliO; KEGG: pen:PSEEN3804 flagellar assembly protein FliO; flagellar biosynthesis protein FliO 4363824 5871712 PputGB1_3918 Pseudomonas putida GB-1 flagellar biosynthesis protein FliO YP_001670144.1 4363390 R 76869 CDS YP_001670145.1 167034914 5871713 complement(4363837..4364301) 1 NC_010322.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 4364301 fliN 5871713 fliN Pseudomonas putida GB-1 flagellar motor switch protein YP_001670145.1 4363837 R 76869 CDS YP_001670146.1 167034915 5871714 complement(4364349..4365317) 1 NC_010322.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 4365317 fliM 5871714 fliM Pseudomonas putida GB-1 flagellar motor switch protein FliM YP_001670146.1 4364349 R 76869 CDS YP_001670147.1 167034916 5871715 complement(4365327..4365824) 1 NC_010322.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 4365824 fliL 5871715 fliL Pseudomonas putida GB-1 flagellar basal body-associated protein FliL YP_001670147.1 4365327 R 76869 CDS YP_001670148.1 167034917 5871716 complement(4365976..4367241) 1 NC_010322.1 PFAM: flagellar hook-length control protein; KEGG: pen:PSEEN3808 flagellar hook-length control protein FliK; flagellar hook-length control protein 4367241 5871716 PputGB1_3922 Pseudomonas putida GB-1 flagellar hook-length control protein YP_001670148.1 4365976 R 76869 CDS YP_001670149.1 167034918 5871717 complement(4367314..4367661) 1 NC_010322.1 PFAM: Hpt domain protein; KEGG: pen:PSEEN3809 hypothetical protein; Hpt protein 4367661 5871717 PputGB1_3923 Pseudomonas putida GB-1 Hpt protein YP_001670149.1 4367314 R 76869 CDS YP_001670150.1 167034919 5871718 complement(4367710..4369401) 1 NC_010322.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3810 sensor histidine kinase/response regulator (hybrid); response regulator receiver protein 4369401 5871718 PputGB1_3924 Pseudomonas putida GB-1 response regulator receiver protein YP_001670150.1 4367710 R 76869 CDS YP_001670151.1 167034920 5871719 complement(4369410..4369715) 1 NC_010322.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3811 anti-sigma F factor antagonist; anti-sigma-factor antagonist 4369715 5871719 PputGB1_3925 Pseudomonas putida GB-1 anti-sigma-factor antagonist YP_001670151.1 4369410 R 76869 CDS YP_001670152.1 167034921 5871720 complement(4369830..4370282) 1 NC_010322.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 4370282 fliJ 5871720 fliJ Pseudomonas putida GB-1 flagellar biosynthesis chaperone YP_001670152.1 4369830 R 76869 CDS YP_001670153.1 167034922 5871721 complement(4370289..4371644) 1 NC_010322.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 4371644 fliI 5871721 fliI Pseudomonas putida GB-1 flagellum-specific ATP synthase YP_001670153.1 4370289 R 76869 CDS YP_001670154.1 167034923 5871722 complement(4371634..4372416) 1 NC_010322.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 4372416 fliH 5871722 fliH Pseudomonas putida GB-1 flagellar assembly protein H YP_001670154.1 4371634 R 76869 CDS YP_001670155.1 167034924 5871723 complement(4372453..4373472) 1 NC_010322.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 4373472 fliG 5871723 fliG Pseudomonas putida GB-1 flagellar motor switch protein G YP_001670155.1 4372453 R 76869 CDS YP_001670156.1 167034925 5871724 complement(4373465..4375243) 1 NC_010322.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 4375243 fliF 5871724 fliF Pseudomonas putida GB-1 flagellar MS-ring protein YP_001670156.1 4373465 R 76869 CDS YP_001670157.1 167034926 5871725 complement(4375259..4375591) 1 NC_010322.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 4375591 fliE 5871725 fliE Pseudomonas putida GB-1 flagellar hook-basal body protein FliE YP_001670157.1 4375259 R 76869 CDS YP_001670158.1 167034927 5871726 complement(4375679..4377034) 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN3818 response regulator FleR; Fis family two component sigma-54 specific transcriptional regulator 4377034 5871726 PputGB1_3932 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001670158.1 4375679 R 76869 CDS YP_001670159.1 167034928 5871727 complement(4377034..4378251) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pen:PSEEN3819 sensory box histidine kinase FleS; PAS/PAC sensor signal transduction histidine kinase 4378251 5871727 PputGB1_3933 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001670159.1 4377034 R 76869 CDS YP_001670160.1 167034929 5871728 complement(4378461..4379936) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3820 transcriptional regulator FleQ; sigma-54 dependent trancsriptional regulator 4379936 5871728 PputGB1_3934 Pseudomonas putida GB-1 sigma-54 dependent trancsriptional regulator YP_001670160.1 4378461 R 76869 CDS YP_001670161.1 167034930 5871729 complement(4380105..4380434) 1 NC_010322.1 KEGG: psp:PSPPH_3388 motility-related protein FliT; hypothetical protein 4380434 5871729 PputGB1_3935 Pseudomonas putida GB-1 hypothetical protein YP_001670161.1 4380105 R 76869 CDS YP_001670162.1 167034931 5871730 complement(4380415..4380816) 1 NC_010322.1 flagellin specific chaperone; flagellar protein FliS 4380816 fliS 5871730 fliS Pseudomonas putida GB-1 flagellar protein FliS YP_001670162.1 4380415 R 76869 CDS YP_001670163.1 167034932 5871731 complement(4380944..4382335) 1 NC_010322.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: psa:PST_1406 flagellar cap protein FliD; flagellar hook-associated 2 domain-containing protein 4382335 5871731 PputGB1_3937 Pseudomonas putida GB-1 flagellar hook-associated 2 domain-containing protein YP_001670163.1 4380944 R 76869 CDS YP_001670164.1 167034933 5871732 complement(4382416..4382772) 1 NC_010322.1 PFAM: flagellar protein FlaG protein; KEGG: pfl:PFL_1630 flagellin FlaG; flagellar protein FlaG protein 4382772 5871732 PputGB1_3938 Pseudomonas putida GB-1 flagellar protein FlaG protein YP_001670164.1 4382416 R 76869 CDS YP_001670165.1 167034934 5871733 complement(4382849..4384300) 1 NC_010322.1 PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: psa:PST_1404 flagellin type B; flagellin domain-containing protein 4384300 5871733 PputGB1_3939 Pseudomonas putida GB-1 flagellin domain-containing protein YP_001670165.1 4382849 R 76869 CDS YP_001670166.1 167034935 5871734 complement(4384689..4385618) 1 NC_010322.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: pfo:Pfl_1524 3-oxoacyl-(acyl-carrier-protein) synthase III, putative; beta-ketoacyl-acyl-carrier-protein synthase I 4385618 5871734 PputGB1_3940 Pseudomonas putida GB-1 beta-ketoacyl-acyl-carrier-protein synthase I YP_001670166.1 4384689 R 76869 CDS YP_001670167.1 167034936 5871735 complement(4385906..4387468) 1 NC_010322.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 4387468 flgL 5871735 flgL Pseudomonas putida GB-1 flagellar hook-associated protein FlgL YP_001670167.1 4385906 R 76869 CDS YP_001670168.1 167034937 5871736 complement(4387482..4389524) 1 NC_010322.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 4389524 flgK 5871736 flgK Pseudomonas putida GB-1 flagellar hook-associated protein FlgK YP_001670168.1 4387482 R 76869 CDS YP_001670169.1 167034938 5871737 complement(4389537..4390691) 1 NC_010322.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 4390691 flgJ 5871737 flgJ Pseudomonas putida GB-1 flagellar rod assembly protein/muramidase FlgJ YP_001670169.1 4389537 R 76869 CDS YP_001670170.1 167034939 5871738 complement(4390703..4391818) 1 NC_010322.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4391818 flgI 5871738 flgI Pseudomonas putida GB-1 flagellar basal body P-ring protein YP_001670170.1 4390703 R 76869 CDS YP_001670171.1 167034940 5871739 complement(4391825..4392520) 1 NC_010322.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4392520 flgH 5871739 flgH Pseudomonas putida GB-1 flagellar basal body L-ring protein YP_001670171.1 4391825 R 76869 CDS YP_001670172.1 167034941 5871740 complement(4392557..4393342) 1 NC_010322.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 4393342 flgG 5871740 flgG Pseudomonas putida GB-1 flagellar basal body rod protein FlgG YP_001670172.1 4392557 R 76869 CDS YP_001670173.1 167034942 5871741 complement(4393390..4394130) 1 NC_010322.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 4394130 flgF 5871741 flgF Pseudomonas putida GB-1 flagellar basal body rod protein FlgF YP_001670173.1 4393390 R 76869 CDS YP_001670174.1 167034943 5871742 complement(4394291..4394461) 1 NC_010322.1 KEGG: pmy:Pmen_1706 hypothetical protein; hypothetical protein 4394461 5871742 PputGB1_3948 Pseudomonas putida GB-1 hypothetical protein YP_001670174.1 4394291 R 76869 CDS YP_001670175.1 167034944 5871743 complement(4394632..4395954) 1 NC_010322.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 4395954 flgE 5871743 flgE Pseudomonas putida GB-1 flagellar hook protein FlgE YP_001670175.1 4394632 R 76869 CDS YP_001670176.1 167034945 5871744 complement(4395983..4396684) 1 NC_010322.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 4396684 flgD 5871744 flgD Pseudomonas putida GB-1 flagellar basal body rod modification protein YP_001670176.1 4395983 R 76869 CDS YP_001670177.1 167034946 5871745 complement(4396697..4397140) 1 NC_010322.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 4397140 flgC 5871745 flgC Pseudomonas putida GB-1 flagellar basal body rod protein FlgC YP_001670177.1 4396697 R 76869 CDS YP_001670178.1 167034947 5871746 complement(4397143..4397553) 1 NC_010322.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 4397553 flgB 5871746 flgB Pseudomonas putida GB-1 flagellar basal body rod protein FlgB YP_001670178.1 4397143 R 76869 CDS YP_001670179.1 167034948 5871747 complement(4397826..4398653) 1 NC_010322.1 PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3844 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 4398653 5871747 PputGB1_3953 Pseudomonas putida GB-1 chemotaxis protein CheR YP_001670179.1 4397826 R 76869 CDS YP_001670180.1 167034949 5871748 complement(4398703..4399632) 1 NC_010322.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3845 chemotaxis protein CheV; response regulator receiver modulated CheW protein 4399632 5871748 PputGB1_3954 Pseudomonas putida GB-1 response regulator receiver modulated CheW protein YP_001670180.1 4398703 R 76869 CDS YP_001670181.1 167034950 5871749 4399710..4400462 1 NC_010322.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4400462 flgA 5871749 flgA Pseudomonas putida GB-1 flagellar basal body P-ring biosynthesis protein FlgA YP_001670181.1 4399710 D 76869 CDS YP_001670182.1 167034951 5871750 4400627..4400941 1 NC_010322.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pen:PSEEN3847 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 4400941 5871750 PputGB1_3956 Pseudomonas putida GB-1 anti-sigma-28 factor FlgM YP_001670182.1 4400627 D 76869 CDS YP_001670183.1 167034952 5871751 4400991..4401458 1 NC_010322.1 PFAM: FlgN family protein; KEGG: pen:PSEEN3848 flagella synthesis protein FlgN; FlgN family protein 4401458 5871751 PputGB1_3957 Pseudomonas putida GB-1 FlgN family protein YP_001670183.1 4400991 D 76869 CDS YP_001670184.1 167034953 5871752 4401538..4402281 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3849 hypothetical protein; type IV pilus assembly PilZ 4402281 5871752 PputGB1_3958 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001670184.1 4401538 D 76869 CDS YP_001670185.1 167034954 5871753 complement(4402387..4403730) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3850 major facilitator family transporter; major facilitator superfamily transporter 4403730 5871753 PputGB1_3959 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670185.1 4402387 R 76869 CDS YP_001670186.1 167034955 5871754 complement(4403859..4405181) 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3851 glutamine synthetase; glutamate--putrescine ligase 4405181 5871754 PputGB1_3960 Pseudomonas putida GB-1 glutamate--putrescine ligase YP_001670186.1 4403859 R 76869 CDS YP_001670187.1 167034956 5871755 complement(4405272..4405757) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3852 transcriptional regulator BkdR; AsnC family transcriptional regulator 4405757 5871755 PputGB1_3961 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001670187.1 4405272 R 76869 CDS YP_001670188.1 167034957 5871756 4405956..4407188 1 NC_010322.1 PFAM: dehydrogenase E1 component; KEGG: pen:PSEEN3853 2-oxoisovalerate dehydrogenase, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 4407188 5871756 PputGB1_3962 Pseudomonas putida GB-1 3-methyl-2-oxobutanoate dehydrogenase YP_001670188.1 4405956 D 76869 CDS YP_001670189.1 167034958 5871757 4407190..4408248 1 NC_010322.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pen:PSEEN3854 2-oxoisovalerate dehydrogenase, beta subunit; transketolase central region 4408248 5871757 PputGB1_3963 Pseudomonas putida GB-1 transketolase central region YP_001670189.1 4407190 D 76869 CDS YP_001670190.1 167034959 5871758 4408249..4409520 1 NC_010322.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pen:PSEEN3855 2-oxoisovalerate dehydrogenase, lipoamide acyltransferase component; branched-chain alpha-keto acid dehydrogenase subunit E2 4409520 5871758 PputGB1_3964 Pseudomonas putida GB-1 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001670190.1 4408249 D 76869 CDS YP_001670191.1 167034960 5871759 4409523..4410902 1 NC_010322.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4410902 5871759 PputGB1_3965 Pseudomonas putida GB-1 dihydrolipoamide dehydrogenase YP_001670191.1 4409523 D 76869 CDS YP_001670192.1 167034961 5871760 complement(4410981..4411979) 1 NC_010322.1 KEGG: asa:ASA_4012 GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 4411979 5871760 PputGB1_3966 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase YP_001670192.1 4410981 R 76869 CDS YP_001670193.1 167034962 5871761 4412196..4412711 1 NC_010322.1 KEGG: pen:PSEEN3857 hypothetical protein; hypothetical protein 4412711 5871761 PputGB1_3967 Pseudomonas putida GB-1 hypothetical protein YP_001670193.1 4412196 D 76869 CDS YP_001670194.1 167034963 5871762 4412835..4413455 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pae:PA1269 probable transcriptional regulator; GntR family transcriptional regulator 4413455 5871762 PputGB1_3968 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670194.1 4412835 D 76869 CDS YP_001670195.1 167034964 5871763 4413620..4414993 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6108 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4414993 5871763 PputGB1_3969 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670195.1 4413620 D 76869 CDS YP_001670196.1 167034965 5871764 4415030..4415974 1 NC_010322.1 PFAM: dihydrodipicolinate synthetase; KEGG: pen:PSEEN4051 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 4415974 5871764 PputGB1_3970 Pseudomonas putida GB-1 dihydrodipicolinate synthetase YP_001670196.1 4415030 D 76869 CDS YP_001670197.1 167034966 5871765 4416324..4417058 1 NC_010322.1 PFAM: AzlC family protein; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC; AzlC family protein 4417058 5871765 PputGB1_3971 Pseudomonas putida GB-1 AzlC family protein YP_001670197.1 4416324 D 76869 CDS YP_001670198.1 167034967 5871766 4417055..4417381 1 NC_010322.1 PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport; branched-chain amino acid transport 4417381 5871766 PputGB1_3972 Pseudomonas putida GB-1 branched-chain amino acid transport YP_001670198.1 4417055 D 76869 CDS YP_001670199.1 167034968 5871767 4417563..4418930 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: bch:Bcen2424_4907 amino acid permease-associated region; amino acid permease-associated protein 4418930 5871767 PputGB1_3973 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670199.1 4417563 D 76869 CDS YP_001670200.1 167034969 5871769 complement(4419213..4419806) 1 NC_010322.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: pen:PSEEN3864 ATP-binding protein PhnN; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 4419806 5871769 PputGB1_3974 Pseudomonas putida GB-1 phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_001670200.1 4419213 R 76869 CDS YP_001670201.1 167034970 5871770 4420153..4420479 1 NC_010322.1 PFAM: Arc domain protein DNA binding domain protein; KEGG: pen:PSEEN3868 alginate biosynthesis transcriptional activator; Arc domain-containing protein 4420479 5871770 PputGB1_3975 Pseudomonas putida GB-1 Arc domain-containing protein YP_001670201.1 4420153 D 76869 CDS YP_001670202.1 167034971 5871771 complement(4420586..4422028) 1 NC_010322.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pen:PSEEN3870 magnesium transporter; magnesium transporter 4422028 5871771 PputGB1_3976 Pseudomonas putida GB-1 magnesium transporter YP_001670202.1 4420586 R 76869 CDS YP_001670203.1 167034972 5871777 complement(4423220..4423408) 1 NC_010322.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 4423408 5871777 PputGB1_3977 Pseudomonas putida GB-1 carbon storage regulator YP_001670203.1 4423220 R 76869 CDS YP_001670204.1 167034973 5871778 complement(4423576..4424811) 1 NC_010322.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 4424811 5871778 PputGB1_3978 Pseudomonas putida GB-1 aspartate kinase YP_001670204.1 4423576 R 76869 CDS YP_001670205.1 167034974 5871779 complement(4424896..4427589) 1 NC_010322.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 4427589 alaS 5871779 alaS Pseudomonas putida GB-1 alanyl-tRNA synthetase YP_001670205.1 4424896 R 76869 CDS YP_001670206.1 167034975 5871780 complement(4427837..4428844) 1 NC_010322.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 4428844 5871780 PputGB1_3980 Pseudomonas putida GB-1 succinylglutamate desuccinylase YP_001670206.1 4427837 R 76869 CDS YP_001670207.1 167034976 5871781 complement(4428855..4429145) 1 NC_010322.1 KEGG: pen:PSEEN3877 hypothetical protein; hypothetical protein 4429145 5871781 PputGB1_3981 Pseudomonas putida GB-1 hypothetical protein YP_001670207.1 4428855 R 76869 CDS YP_001670208.1 167034977 5871782 complement(4429160..4430509) 1 NC_010322.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 4430509 5871782 PputGB1_3982 Pseudomonas putida GB-1 succinylarginine dihydrolase YP_001670208.1 4429160 R 76869 CDS YP_001670209.1 167034978 5871783 complement(4430533..4431996) 1 NC_010322.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 4431996 astD 5871783 astD Pseudomonas putida GB-1 succinylglutamic semialdehyde dehydrogenase YP_001670209.1 4430533 R 76869 CDS YP_001670210.1 167034979 5871784 complement(4431997..4433025) 1 NC_010322.1 KEGG: pen:PSEEN3880 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 4433025 5871784 PputGB1_3984 Pseudomonas putida GB-1 arginine N-succinyltransferase YP_001670210.1 4431997 R 76869 CDS YP_001670211.1 167034980 5871785 complement(4433104..4434123) 1 NC_010322.1 KEGG: pen:PSEEN3881 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit; arginine/ornithine succinyltransferase subunit alpha 4434123 5871785 PputGB1_3985 Pseudomonas putida GB-1 arginine/ornithine succinyltransferase subunit alpha YP_001670211.1 4433104 R 76869 CDS YP_001670212.1 167034981 5871786 complement(4434259..4435479) 1 NC_010322.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 4435479 argD 5871786 argD Pseudomonas putida GB-1 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001670212.1 4434259 R 76869 CDS YP_001670213.1 167034982 5871787 complement(4435787..4436767) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3883 transcriptional regulator ArgR, AraC family; AraC family transcriptional regulator 4436767 5871787 PputGB1_3987 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670213.1 4435787 R 76869 CDS YP_001670214.1 167034983 5871788 complement(4436866..4437630) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3884 arginine/ornithine transport ATP-binding protein AotP; ABC transporter-like protein 4437630 5871788 PputGB1_3988 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670214.1 4436866 R 76869 CDS YP_001670215.1 167034984 5871789 complement(4437653..4438351) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3885 arginine/ornithine transport membrane protein AotM; polar amino acid ABC transporter inner membrane subunit 4438351 5871789 PputGB1_3989 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670215.1 4437653 R 76869 CDS YP_001670216.1 167034985 5871790 complement(4438348..4439037) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3886 arginine/ornithine transport protein AotQ (membrane); polar amino acid ABC transporter inner membrane subunit 4439037 5871790 PputGB1_3990 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670216.1 4438348 R 76869 CDS YP_001670217.1 167034986 5871791 complement(4439126..4439911) 1 NC_010322.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3887 arginine/ornithine periplasmic-binding protein AotJ; cationic amino acid ABC transporter periplasmic binding protein 4439911 5871791 PputGB1_3991 Pseudomonas putida GB-1 cationic amino acid ABC transporter periplasmic binding protein YP_001670217.1 4439126 R 76869 CDS YP_001670218.1 167034987 5871792 complement(4440426..4442387) 1 NC_010322.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4442387 5871792 PputGB1_3992 Pseudomonas putida GB-1 acetyl-CoA synthetase YP_001670218.1 4440426 R 76869 CDS YP_001670219.1 167034988 5871793 4442786..4443040 1 NC_010322.1 KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein 4443040 5871793 PputGB1_3993 Pseudomonas putida GB-1 hypothetical protein YP_001670219.1 4442786 D 76869 CDS YP_001670220.1 167034989 5871794 complement(4443194..4444753) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN3891 phenylalanine hydroxylase gene cluster transcription activator; transcriptional regulator TyrR 4444753 5871794 PputGB1_3994 Pseudomonas putida GB-1 transcriptional regulator TyrR YP_001670220.1 4443194 R 76869 CDS YP_001670221.1 167034990 5871795 4445010..4445798 1 NC_010322.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 4445798 phhA 5871795 phhA Pseudomonas putida GB-1 phenylalanine 4-monooxygenase YP_001670221.1 4445010 D 76869 CDS YP_001670222.1 167034991 5871796 4445838..4446194 1 NC_010322.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 4446194 phhB 5871796 phhB Pseudomonas putida GB-1 pterin-4-alpha-carbinolamine dehydratase YP_001670222.1 4445838 D 76869 CDS YP_001670223.1 167034992 5871797 4446374..4447207 1 NC_010322.1 KEGG: pen:PSEEN3441 protein-tyrosine phosphatase; autotransporter; protein tyrosine/serine phosphatase 4447207 5871797 PputGB1_3997 Pseudomonas putida GB-1 protein tyrosine/serine phosphatase YP_001670223.1 4446374 D 76869 CDS YP_001670224.1 167034993 5871798 4447604..4448791 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3896 transport protein (MFS family); major facilitator superfamily transporter 4448791 5871798 PputGB1_3998 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670224.1 4447604 D 76869 CDS YP_001670225.1 167034994 5871799 complement(4448829..4451849) 1 NC_010322.1 PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3897 oxidase, FAD-binding; FAD linked oxidase domain-containing protein 4451849 5871799 PputGB1_3999 Pseudomonas putida GB-1 FAD linked oxidase domain-containing protein YP_001670225.1 4448829 R 76869 CDS YP_001670226.1 167034995 5871800 4452002..4452886 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3898 transcriptional regulator, LysR family; LysR family transcriptional regulator 4452886 5871800 PputGB1_4000 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670226.1 4452002 D 76869 CDS YP_001670227.1 167034996 5871801 complement(4452955..4454358) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3899 aromatic amino acid transporter (APC family); amino acid permease-associated protein 4454358 5871801 PputGB1_4001 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670227.1 4452955 R 76869 CDS YP_001670228.1 167034997 5871802 complement(4455020..4456087) 1 NC_010322.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN3900 ribosomal large subunit pseudouridine synthase B; RNA-binding S4 domain-containing protein 4456087 5871802 PputGB1_4002 Pseudomonas putida GB-1 RNA-binding S4 domain-containing protein YP_001670228.1 4455020 R 76869 CDS YP_001670229.1 167034998 5871803 complement(4456361..4457131) 1 NC_010322.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pen:PSEEN3901 hypothetical protein; segregation and condensation protein B 4457131 5871803 PputGB1_4003 Pseudomonas putida GB-1 segregation and condensation protein B YP_001670229.1 4456361 R 76869 CDS YP_001670230.1 167034999 5871804 complement(4457118..4457963) 1 NC_010322.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pen:PSEEN3902 hypothetical protein; chromosome segregation and condensation protein ScpA 4457963 5871804 PputGB1_4004 Pseudomonas putida GB-1 chromosome segregation and condensation protein ScpA YP_001670230.1 4457118 R 76869 CDS YP_001670231.1 167035000 5871805 complement(4457969..4458634) 1 NC_010322.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN3903 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 4458634 5871805 PputGB1_4005 Pseudomonas putida GB-1 Sua5/YciO/YrdC/YwlC family protein YP_001670231.1 4457969 R 76869 CDS YP_001670232.1 167035001 5871806 complement(4458612..4459472) 1 NC_010322.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pen:PSEEN3904 phosphoesterase (PHP family); phosphotransferase domain-containing protein 4459472 5871806 PputGB1_4006 Pseudomonas putida GB-1 phosphotransferase domain-containing protein YP_001670232.1 4458612 R 76869 CDS YP_001670233.1 167035002 5871807 4459540..4460133 1 NC_010322.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 4460133 5871807 PputGB1_4007 Pseudomonas putida GB-1 intracellular septation protein A YP_001670233.1 4459540 D 76869 CDS YP_001670234.1 167035003 5871808 4460135..4460434 1 NC_010322.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 4460434 5871808 PputGB1_4008 Pseudomonas putida GB-1 YciI-like protein YP_001670234.1 4460135 D 76869 CDS YP_001670235.1 167035004 5871809 4460577..4461254 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3908 two-component response regulator; two component transcriptional regulator 4461254 5871809 PputGB1_4009 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670235.1 4460577 D 76869 CDS YP_001670236.1 167035005 5871810 4461356..4461772 1 NC_010322.1 PFAM: protein of unknown function Spy-related; KEGG: pen:PSEEN3909 hypothetical protein; hypothetical protein 4461772 5871810 PputGB1_4010 Pseudomonas putida GB-1 hypothetical protein YP_001670236.1 4461356 D 76869 CDS YP_001670237.1 167035006 5871811 4461831..4463171 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3910 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4463171 5871811 PputGB1_4011 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670237.1 4461831 D 76869 CDS YP_001670238.1 167035007 5871812 complement(4463257..4463814) 1 NC_010322.1 PFAM: nitroreductase; KEGG: pen:PSEEN3911 nitroreductase; nitroreductase 4463814 5871812 PputGB1_4012 Pseudomonas putida GB-1 nitroreductase YP_001670238.1 4463257 R 76869 CDS YP_001670239.1 167035008 5871813 4463917..4465371 1 NC_010322.1 PFAM: cation transporter; KEGG: pen:PSEEN3912 potassium uptake protein, TrkH family; cation transporter 4465371 5871813 PputGB1_4013 Pseudomonas putida GB-1 cation transporter YP_001670239.1 4463917 D 76869 CDS YP_001670240.1 167035009 5871814 complement(4465328..4466389) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3913 transcriptional regulator, AraC family; AraC family transcriptional regulator 4466389 5871814 PputGB1_4014 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670240.1 4465328 R 76869 CDS YP_001670241.1 167035010 5871815 4466543..4466854 1 NC_010322.1 KEGG: pen:PSEEN3914 hypothetical protein; hypothetical protein 4466854 5871815 PputGB1_4015 Pseudomonas putida GB-1 hypothetical protein YP_001670241.1 4466543 D 76869 CDS YP_001670242.1 167035011 5871816 complement(4466908..4467720) 1 NC_010322.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN3916 metallo-dependent phosphoesterase; metallophosphoesterase 4467720 5871816 PputGB1_4016 Pseudomonas putida GB-1 metallophosphoesterase YP_001670242.1 4466908 R 76869 CDS YP_001670243.1 167035012 5871817 4467848..4468615 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3917 transcriptional regulator, AraC family; AraC family transcriptional regulator 4468615 5871817 PputGB1_4017 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670243.1 4467848 D 76869 CDS YP_001670244.1 167035013 5871818 4468716..4469606 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3918 hypothetical protein; hypothetical protein 4469606 5871818 PputGB1_4018 Pseudomonas putida GB-1 hypothetical protein YP_001670244.1 4468716 D 76869 CDS YP_001670245.1 167035014 5871819 complement(4469607..4469888) 1 NC_010322.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: pen:PSEEN3919 hypothetical protein; hypothetical protein 4469888 5871819 PputGB1_4019 Pseudomonas putida GB-1 hypothetical protein YP_001670245.1 4469607 R 76869 CDS YP_001670246.1 167035015 5871820 4469956..4472142 1 NC_010322.1 PFAM: Patatin; surface antigen variable number repeat protein; KEGG: pen:PSEEN3920 hypothetical protein; patatin 4472142 5871820 PputGB1_4020 Pseudomonas putida GB-1 patatin YP_001670246.1 4469956 D 76869 CDS YP_001670247.1 167035016 5871821 complement(4472176..4472613) 1 NC_010322.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN3921 transcriptional regulator, MarR family; MarR family transcriptional regulator 4472613 5871821 PputGB1_4021 Pseudomonas putida GB-1 MarR family transcriptional regulator YP_001670247.1 4472176 R 76869 CDS YP_001670248.1 167035017 5871822 complement(4472764..4474911) 1 NC_010322.1 KEGG: pen:PSEEN3922 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 4474911 5871822 PputGB1_4022 Pseudomonas putida GB-1 ATP-dependent DNA helicase RecQ YP_001670248.1 4472764 R 76869 CDS YP_001670249.1 167035018 5871823 4475158..4475745 1 NC_010322.1 TIGRFAM: yecA family protein; KEGG: pen:PSEEN3923 hypothetical protein; yecA family protein 4475745 5871823 PputGB1_4023 Pseudomonas putida GB-1 yecA family protein YP_001670249.1 4475158 D 76869 CDS YP_001670250.1 167035019 5871824 4475753..4476118 1 NC_010322.1 PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN3924 hypothetical protein; hypothetical protein 4476118 5871824 PputGB1_4024 Pseudomonas putida GB-1 hypothetical protein YP_001670250.1 4475753 D 76869 CDS YP_001670251.1 167035020 5871825 4476430..4477788 1 NC_010322.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3927 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 4477788 5871825 PputGB1_4025 Pseudomonas putida GB-1 TolC family type I secretion outer membrane protein YP_001670251.1 4476430 D 76869 CDS YP_001670252.1 167035021 5871826 complement(4477831..4478430) 1 NC_010322.1 PFAM: DTW domain containing protein; KEGG: pen:PSEEN3930 hypothetical protein; DTW domain-containing protein 4478430 5871826 PputGB1_4026 Pseudomonas putida GB-1 DTW domain-containing protein YP_001670252.1 4477831 R 76869 CDS YP_001670253.1 167035022 5871827 complement(4478495..4480060) 1 NC_010322.1 KEGG: pen:PSEEN3931 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 4480060 5871827 PputGB1_4027 Pseudomonas putida GB-1 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001670253.1 4478495 R 76869 CDS YP_001670254.1 167035023 5871828 complement(4480198..4481091) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3932 transcriptional regulator, LysR family; LysR family transcriptional regulator 4481091 5871828 PputGB1_4028 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670254.1 4480198 R 76869 CDS YP_001670255.1 167035024 5871829 4481305..4482267 1 NC_010322.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pen:PSEEN3933 agmatinase; agmatinase 4482267 5871829 PputGB1_4029 Pseudomonas putida GB-1 agmatinase YP_001670255.1 4481305 D 76869 CDS YP_001670256.1 167035025 5871830 4482544..4483923 1 NC_010322.1 PFAM: Na+/solute symporter; KEGG: pen:PSEEN3934 sodium-solute symporter; Na+/solute symporter 4483923 5871830 PputGB1_4030 Pseudomonas putida GB-1 Na+/solute symporter YP_001670256.1 4482544 D 76869 CDS YP_001670257.1 167035026 5871831 complement(4484010..4484138) 1 NC_010322.1 KEGG: pen:PSEEN3935 hypothetical protein; hypothetical protein 4484138 5871831 PputGB1_4031 Pseudomonas putida GB-1 hypothetical protein YP_001670257.1 4484010 R 76869 CDS YP_001670258.1 167035027 5871832 complement(4484263..4485156) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3936 transcriptional regulator, LysR family; LysR family transcriptional regulator 4485156 5871832 PputGB1_4032 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670258.1 4484263 R 76869 CDS YP_001670259.1 167035028 5871833 4485263..4486423 1 NC_010322.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3937 hypothetical protein; hypothetical protein 4486423 5871833 PputGB1_4033 Pseudomonas putida GB-1 hypothetical protein YP_001670259.1 4485263 D 76869 CDS YP_001670260.1 167035029 5871834 complement(4486392..4487318) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3940 hypothetical protein; hypothetical protein 4487318 5871834 PputGB1_4034 Pseudomonas putida GB-1 hypothetical protein YP_001670260.1 4486392 R 76869 CDS YP_001670261.1 167035030 5871835 complement(4487424..4487819) 1 NC_010322.1 KEGG: pfl:PFL_1560 hypothetical protein; hypothetical protein 4487819 5871835 PputGB1_4035 Pseudomonas putida GB-1 hypothetical protein YP_001670261.1 4487424 R 76869 CDS YP_001670262.1 167035031 5871836 4487996..4488298 1 NC_010322.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pen:PSEEN3938 hypothetical protein; addiction module killer protein 4488298 5871836 PputGB1_4036 Pseudomonas putida GB-1 addiction module killer protein YP_001670262.1 4487996 D 76869 CDS YP_001670263.1 167035032 5871837 4488291..4488584 1 NC_010322.1 TIGRFAM: addiction module antidote protein; KEGG: pen:PSEEN3939 hypothetical protein; putative transcriptional regulator 4488584 5871837 PputGB1_4037 Pseudomonas putida GB-1 putative transcriptional regulator YP_001670263.1 4488291 D 76869 CDS YP_001670264.1 167035033 5871838 4488674..4488946 1 NC_010322.1 KEGG: pen:PSEEN3948 hypothetical protein; hypothetical protein 4488946 5871838 PputGB1_4038 Pseudomonas putida GB-1 hypothetical protein YP_001670264.1 4488674 D 76869 CDS YP_001670265.1 167035034 5871839 complement(4489072..4490433) 1 NC_010322.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN3951 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 4490433 5871839 PputGB1_4039 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001670265.1 4489072 R 76869 CDS YP_001670266.1 167035035 5871840 4490537..4491838 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3952 transporter with mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4491838 5871840 PputGB1_4040 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001670266.1 4490537 D 76869 CDS YP_001670267.1 167035036 5871841 complement(4491855..4492268) 1 NC_010322.1 PFAM: Class I peptide chain release factor; KEGG: pen:PSEEN2056 protein chain release factor B; peptidyl-tRNA hydrolase domain-containing protein 4492268 5871841 PputGB1_4041 Pseudomonas putida GB-1 peptidyl-tRNA hydrolase domain-containing protein YP_001670267.1 4491855 R 76869 CDS YP_001670268.1 167035037 5871842 complement(4492334..4493269) 1 NC_010322.1 PFAM: Auxin Efflux Carrier; KEGG: pmy:Pmen_0140 auxin efflux carrier; auxin efflux carrier 4493269 5871842 PputGB1_4042 Pseudomonas putida GB-1 auxin efflux carrier YP_001670268.1 4492334 R 76869 CDS YP_001670269.1 167035038 5871843 complement(4493271..4494146) 1 NC_010322.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3958 transport protein; carboxylate/amino acid/amine transporter 4494146 5871843 PputGB1_4043 Pseudomonas putida GB-1 carboxylate/amino acid/amine transporter YP_001670269.1 4493271 R 76869 CDS YP_001670270.1 167035039 5871844 complement(4494331..4494930) 1 NC_010322.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN3959 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase (quinone) 4494930 5871844 PputGB1_4044 Pseudomonas putida GB-1 NAD(P)H dehydrogenase (quinone) YP_001670270.1 4494331 R 76869 CDS YP_001670271.1 167035040 5871845 complement(4495031..4495354) 1 NC_010322.1 KEGG: pen:PSEEN3960 hypothetical protein; hypothetical protein 4495354 5871845 PputGB1_4045 Pseudomonas putida GB-1 hypothetical protein YP_001670271.1 4495031 R 76869 CDS YP_001670272.1 167035041 5871846 4495403..4496326 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3961 transcriptional regulator, LysR family; LysR family transcriptional regulator 4496326 5871846 PputGB1_4046 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670272.1 4495403 D 76869 CDS YP_001670273.1 167035042 5871847 4496340..4497152 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3962 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4497152 5871847 PputGB1_4047 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670273.1 4496340 D 76869 CDS YP_001670274.1 167035043 5871848 4497146..4497703 1 NC_010322.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN3963 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 4497703 5871848 PputGB1_4048 Pseudomonas putida GB-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001670274.1 4497146 D 76869 CDS YP_001670275.1 167035044 5871849 4497767..4499599 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3964 ABC transporter, ATP-binding protein/permease protein; ABC transporter-like protein 4499599 5871849 PputGB1_4049 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670275.1 4497767 D 76869 CDS YP_001670276.1 167035045 5871850 complement(4499633..4500760) 1 NC_010322.1 PFAM: protein of unknown function DUF482; KEGG: pen:PSEEN3965 hypothetical protein; hypothetical protein 4500760 5871850 PputGB1_4050 Pseudomonas putida GB-1 hypothetical protein YP_001670276.1 4499633 R 76869 CDS YP_001670277.1 167035046 5871851 4501023..4502267 1 NC_010322.1 KEGG: pen:PSEEN3966 hypothetical protein; hypothetical protein 4502267 5871851 PputGB1_4051 Pseudomonas putida GB-1 hypothetical protein YP_001670277.1 4501023 D 76869 CDS YP_001670278.1 167035047 5871852 complement(4502384..4503505) 1 NC_010322.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 4503505 5871852 PputGB1_4052 Pseudomonas putida GB-1 3-oxoacyl-ACP synthase YP_001670278.1 4502384 R 76869 CDS YP_001670279.1 167035048 5871853 complement(4503742..4507647) 1 NC_010322.1 KEGG: pen:PSEEN3969 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 4507647 5871853 PputGB1_4053 Pseudomonas putida GB-1 ATP-dependent helicase HrpA YP_001670279.1 4503742 R 76869 CDS YP_001670280.1 167035049 5871854 4508142..4509506 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3971 glutamine synthetase; glutamine synthetase 4509506 5871854 PputGB1_4054 Pseudomonas putida GB-1 glutamine synthetase YP_001670280.1 4508142 D 76869 CDS YP_001670281.1 167035050 5871855 4509531..4510838 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3972 oxidoreductase; FAD dependent oxidoreductase 4510838 5871855 PputGB1_4055 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001670281.1 4509531 D 76869 CDS YP_001670282.1 167035051 5871856 complement(4510918..4512615) 1 NC_010322.1 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 4512615 5871856 PputGB1_4056 Pseudomonas putida GB-1 long-chain-fatty-acid--CoA ligase YP_001670282.1 4510918 R 76869 CDS YP_001670283.1 167035052 5871857 complement(4512948..4514636) 1 NC_010322.1 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 4514636 5871857 PputGB1_4057 Pseudomonas putida GB-1 long-chain-fatty-acid--CoA ligase YP_001670283.1 4512948 R 76869 CDS YP_001670284.1 167035053 5871858 4514855..4515799 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3976 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4515799 5871858 PputGB1_4058 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670284.1 4514855 D 76869 CDS YP_001670285.1 167035054 5871859 4515834..4516304 1 NC_010322.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN3977 enoyl-CoA hydratase, R-specific; dehydratase 4516304 5871859 PputGB1_4059 Pseudomonas putida GB-1 dehydratase YP_001670285.1 4515834 D 76869 CDS YP_001670286.1 167035055 5871860 complement(4516369..4517607) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN3978 RNA polymerase sigma-70 factor, ECF subfamily; RNA polymerase ECF-subfamily sigma factor 4517607 5871860 PputGB1_4060 Pseudomonas putida GB-1 RNA polymerase ECF-subfamily sigma factor YP_001670286.1 4516369 R 76869 CDS YP_001670287.1 167035056 5871861 complement(4517607..4518092) 1 NC_010322.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pen:PSEEN3979 hypothetical protein; activator of Hsp90 ATPase 1 family protein 4518092 5871861 PputGB1_4061 Pseudomonas putida GB-1 activator of Hsp90 ATPase 1 family protein YP_001670287.1 4517607 R 76869 CDS YP_001670288.1 167035057 5871862 complement(4518114..4518458) 1 NC_010322.1 PFAM: DGPFAETKE family protein; KEGG: pen:PSEEN3980 hypothetical protein; DGPFAETKE family protein 4518458 5871862 PputGB1_4062 Pseudomonas putida GB-1 DGPFAETKE family protein YP_001670288.1 4518114 R 76869 CDS YP_001670289.1 167035058 5871863 complement(4518503..4518928) 1 NC_010322.1 KEGG: pen:PSEEN3981 hypothetical protein; hypothetical protein 4518928 5871863 PputGB1_4063 Pseudomonas putida GB-1 hypothetical protein YP_001670289.1 4518503 R 76869 CDS YP_001670290.1 167035059 5871864 complement(4519112..4519390) 1 NC_010322.1 KEGG: pen:PSEEN4001 hypothetical protein; hypothetical protein 4519390 5871864 PputGB1_4064 Pseudomonas putida GB-1 hypothetical protein YP_001670290.1 4519112 R 76869 CDS YP_001670291.1 167035060 5871865 4519724..4520092 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4002 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4520092 5871865 PputGB1_4065 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001670291.1 4519724 D 76869 CDS YP_001670292.1 167035061 5871866 complement(4520047..4520583) 1 NC_010322.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4520583 5871866 PputGB1_4066 Pseudomonas putida GB-1 peptide deformylase YP_001670292.1 4520047 R 76869 CDS YP_001670293.1 167035062 5871867 complement(4520580..4521539) 1 NC_010322.1 PFAM: ribonuclease BN; KEGG: pen:PSEEN4004 ribonuclease BN; ribonuclease BN 4521539 5871867 PputGB1_4067 Pseudomonas putida GB-1 ribonuclease BN YP_001670293.1 4520580 R 76869 CDS YP_001670294.1 167035063 5871868 complement(4521696..4521875) 1 NC_010322.1 PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; CsbD family protein 4521875 5871868 PputGB1_4068 Pseudomonas putida GB-1 CsbD family protein YP_001670294.1 4521696 R 76869 CDS YP_001670295.1 167035064 5871869 4522118..4523590 1 NC_010322.1 SMART: Parallel beta-helix repeat; KEGG: aci:ACIAD1714 3-dehydroshikimate dehydratase (DHS dehydratase) (DHSase); parallel beta-helix repeat-containing protein 4523590 5871869 PputGB1_4069 Pseudomonas putida GB-1 parallel beta-helix repeat-containing protein YP_001670295.1 4522118 D 76869 CDS YP_001670296.1 167035065 5871870 4523719..4524099 1 NC_010322.1 KEGG: pen:PSEEN4006 hypothetical protein; hypothetical protein 4524099 5871870 PputGB1_4070 Pseudomonas putida GB-1 hypothetical protein YP_001670296.1 4523719 D 76869 CDS YP_001670297.1 167035066 5871871 complement(4524100..4524936) 1 NC_010322.1 SMART: RNA binding S1 domain protein; KEGG: pen:PSEEN4007 hypothetical protein; RNA-binding S1 domain-containing protein 4524936 5871871 PputGB1_4071 Pseudomonas putida GB-1 RNA-binding S1 domain-containing protein YP_001670297.1 4524100 R 76869 CDS YP_001670298.1 167035067 5871872 complement(4525043..4527496) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 4527496 5871872 PputGB1_4072 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001670298.1 4525043 R 76869 CDS YP_001670299.1 167035068 5871873 complement(4527615..4528556) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4528556 5871873 PputGB1_4073 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001670299.1 4527615 R 76869 CDS YP_001670300.1 167035069 5871874 complement(4528553..4529071) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ecw:EcE24377A_4870 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 factor 4529071 5871874 PputGB1_4074 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001670300.1 4528553 R 76869 CDS YP_001670301.1 167035070 5871875 4529219..4530088 1 NC_010322.1 KEGG: pen:PSEEN4008 lipoprotein; lipoprotein 4530088 5871875 PputGB1_4075 Pseudomonas putida GB-1 lipoprotein YP_001670301.1 4529219 D 76869 CDS YP_001670302.1 167035071 5871876 4530215..4530571 1 NC_010322.1 KEGG: yen:YE3851 hypothetical protein; hypothetical protein 4530571 5871876 PputGB1_4076 Pseudomonas putida GB-1 hypothetical protein YP_001670302.1 4530215 D 76869 CDS YP_001670303.1 167035072 5871877 complement(4530611..4532320) 1 NC_010322.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4532320 aceK 5871877 aceK Pseudomonas putida GB-1 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_001670303.1 4530611 R 76869 CDS YP_001670304.1 167035073 5871878 4532410..4533363 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4010 hypothetical protein; hypothetical protein 4533363 5871878 PputGB1_4078 Pseudomonas putida GB-1 hypothetical protein YP_001670304.1 4532410 D 76869 CDS YP_001670305.1 167035074 5871879 4533377..4533835 1 NC_010322.1 KEGG: pfl:PFL_0005 hypothetical protein; hypothetical protein 4533835 5871879 PputGB1_4079 Pseudomonas putida GB-1 hypothetical protein YP_001670305.1 4533377 D 76869 CDS YP_001670306.1 167035075 5871880 complement(4533839..4534720) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4011 hypothetical protein; hypothetical protein 4534720 5871880 PputGB1_4080 Pseudomonas putida GB-1 hypothetical protein YP_001670306.1 4533839 R 76869 CDS YP_001670307.1 167035076 5871881 4535163..4536023 1 NC_010322.1 PFAM: protein of unknown function DUF323; KEGG: pfl:PFL_4089 lipoprotein, putative; hypothetical protein 4536023 5871881 PputGB1_4081 Pseudomonas putida GB-1 hypothetical protein YP_001670307.1 4535163 D 76869 CDS YP_001670308.1 167035077 5871882 4536151..4538610 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_33680 ferripyoverdine receptor; TonB-dependent siderophore receptor 4538610 5871882 PputGB1_4082 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001670308.1 4536151 D 76869 CDS YP_001670309.1 167035078 5871883 complement(4538849..4550677) 1 NC_010322.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: pap:PSPA7_2859 linear gramicidin synthetase subunit D; amino acid adenylation domain-containing protein 4550677 5871883 PputGB1_4083 Pseudomonas putida GB-1 amino acid adenylation domain-containing protein YP_001670309.1 4538849 R 76869 CDS YP_001670310.1 167035079 5871884 complement(4550690..4554034) 1 NC_010322.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfl:PFL_4094 non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein 4554034 5871884 PputGB1_4084 Pseudomonas putida GB-1 amino acid adenylation domain-containing protein YP_001670310.1 4550690 R 76869 CDS YP_001670311.1 167035080 5871885 complement(4554036..4561856) 1 NC_010322.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: psp:PSPPH_1926 pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component; amino acid adenylation domain-containing protein 4561856 5871885 PputGB1_4085 Pseudomonas putida GB-1 amino acid adenylation domain-containing protein YP_001670311.1 4554036 R 76869 CDS YP_001670312.1 167035081 5871886 complement(4561858..4568325) 1 NC_010322.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfl:PFL_4095 peptide synthase; amino acid adenylation domain-containing protein 4568325 5871886 PputGB1_4086 Pseudomonas putida GB-1 amino acid adenylation domain-containing protein YP_001670312.1 4561858 R 76869 CDS YP_001670313.1 167035082 5871887 complement(4568510..4569493) 1 NC_010322.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: psb:Psyr_1956 pyoverdine biosynthesis regulatory gene, putative; taurine catabolism dioxygenase TauD/TfdA 4569493 5871887 PputGB1_4087 Pseudomonas putida GB-1 taurine catabolism dioxygenase TauD/TfdA YP_001670313.1 4568510 R 76869 CDS YP_001670314.1 167035083 5871888 4569675..4570124 1 NC_010322.1 TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pae:PA4922 azurin precursor; azurin 4570124 5871888 PputGB1_4088 Pseudomonas putida GB-1 azurin YP_001670314.1 4569675 D 76869 CDS YP_001670315.1 167035084 5871889 4570161..4571813 1 NC_010322.1 KEGG: pen:PSEEN3224 pyoverdine ABC export system, permease/ATP-binding protein; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 4571813 5871889 PputGB1_4089 Pseudomonas putida GB-1 cyclic peptide transporter YP_001670315.1 4570161 D 76869 CDS YP_001670316.1 167035085 5871890 4571956..4573116 1 NC_010322.1 KEGG: pna:Pnap_4284 hypothetical protein; hypothetical protein 4573116 5871890 PputGB1_4090 Pseudomonas putida GB-1 hypothetical protein YP_001670316.1 4571956 D 76869 CDS YP_001670317.1 167035086 5871891 complement(4573170..4574105) 1 NC_010322.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN4012 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 4574105 5871891 PputGB1_4091 Pseudomonas putida GB-1 aspartyl/asparaginyl beta-hydroxylase YP_001670317.1 4573170 R 76869 CDS YP_001670318.1 167035087 5871892 complement(4574279..4575253) 1 NC_010322.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN4013 cysteine synthase A; cysteine synthase A 4575253 5871892 PputGB1_4092 Pseudomonas putida GB-1 cysteine synthase A YP_001670318.1 4574279 R 76869 CDS YP_001670319.1 167035088 5871893 4575388..4576461 1 NC_010322.1 KEGG: pfl:PFL_1518 hypothetical protein; hypothetical protein 4576461 5871893 PputGB1_4093 Pseudomonas putida GB-1 hypothetical protein YP_001670319.1 4575388 D 76869 CDS YP_001670320.1 167035089 5871894 4576691..4577536 1 NC_010322.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4014 ATPase, AAA family; ATPase 4577536 5871894 PputGB1_4094 Pseudomonas putida GB-1 ATPase YP_001670320.1 4576691 D 76869 CDS YP_001670321.1 167035090 5871895 4577550..4578728 1 NC_010322.1 KEGG: pen:PSEEN4015 hypothetical protein; hypothetical protein 4578728 5871895 PputGB1_4095 Pseudomonas putida GB-1 hypothetical protein YP_001670321.1 4577550 D 76869 CDS YP_001670322.1 167035091 5871896 complement(4578780..4579697) 1 NC_010322.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: pen:PSEEN4016 allophanate hydrolase subunit 2; urea amidolyase-like protein 4579697 5871896 PputGB1_4096 Pseudomonas putida GB-1 urea amidolyase-like protein YP_001670322.1 4578780 R 76869 CDS YP_001670323.1 167035092 5871897 complement(4579694..4580380) 1 NC_010322.1 PFAM: Allophanate hydrolase subunit 1; KEGG: pen:PSEEN4017 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 4580380 5871897 PputGB1_4097 Pseudomonas putida GB-1 allophanate hydrolase subunit 1 YP_001670323.1 4579694 R 76869 CDS YP_001670324.1 167035093 5871898 complement(4580377..4581156) 1 NC_010322.1 PFAM: LamB/YcsF family protein; KEGG: pen:PSEEN4018 hypothetical protein; LamB/YcsF family protein 4581156 5871898 PputGB1_4098 Pseudomonas putida GB-1 LamB/YcsF family protein YP_001670324.1 4580377 R 76869 CDS YP_001670325.1 167035094 5871899 complement(4581166..4582452) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4019 transporter, MFS family; major facilitator superfamily transporter 4582452 5871899 PputGB1_4099 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670325.1 4581166 R 76869 CDS YP_001670326.1 167035095 5871900 4582583..4583494 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 4583494 5871900 PputGB1_4100 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670326.1 4582583 D 76869 CDS YP_001670327.1 167035096 5871901 4583704..4584225 1 NC_010322.1 hypothetical protein 4584225 5871901 PputGB1_4101 Pseudomonas putida GB-1 hypothetical protein YP_001670327.1 4583704 D 76869 CDS YP_001670328.1 167035097 5871902 complement(4584401..4584922) 1 NC_010322.1 KEGG: pen:PSEEN4022 hypothetical protein; hypothetical protein 4584922 5871902 PputGB1_4102 Pseudomonas putida GB-1 hypothetical protein YP_001670328.1 4584401 R 76869 CDS YP_001670329.1 167035098 5871903 complement(4584932..4585705) 1 NC_010322.1 PFAM: glutamine amidotransferase class-II; KEGG: pen:PSEEN4023 glutamine amidotransferase, class II; glutamine amidotransferase 4585705 5871903 PputGB1_4103 Pseudomonas putida GB-1 glutamine amidotransferase YP_001670329.1 4584932 R 76869 CDS YP_001670330.1 167035099 5871904 complement(4585720..4586217) 1 NC_010322.1 KEGG: pen:PSEEN4024 hypothetical protein; hypothetical protein 4586217 5871904 PputGB1_4104 Pseudomonas putida GB-1 hypothetical protein YP_001670330.1 4585720 R 76869 CDS YP_001670331.1 167035100 5871905 4586310..4588352 1 NC_010322.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: pen:PSEEN4025 peptidase, S9 family; oligopeptidase B 4588352 5871905 PputGB1_4105 Pseudomonas putida GB-1 oligopeptidase B YP_001670331.1 4586310 D 76869 CDS YP_001670332.1 167035101 5871906 complement(4588494..4588772) 1 NC_010322.1 KEGG: pen:PSEEN4027 hypothetical protein; hypothetical protein 4588772 5871906 PputGB1_4106 Pseudomonas putida GB-1 hypothetical protein YP_001670332.1 4588494 R 76869 CDS YP_001670333.1 167035102 5871907 4588905..4589276 1 NC_010322.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pfl:PFL_1503 hypothetical protein; hypothetical protein 4589276 5871907 PputGB1_4107 Pseudomonas putida GB-1 hypothetical protein YP_001670333.1 4588905 D 76869 CDS YP_001670334.1 167035103 5871908 4589348..4589818 1 NC_010322.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pfo:Pfl_1395 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 4589818 5871908 PputGB1_4108 Pseudomonas putida GB-1 tRNA/rRNA methyltransferase SpoU YP_001670334.1 4589348 D 76869 CDS YP_001670335.1 167035104 5871909 complement(4589894..4591384) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: rso:RSc2110 probable aldehyde dehydrogenase oxidoreductase protein; aldehyde dehydrogenase 4591384 5871909 PputGB1_4109 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001670335.1 4589894 R 76869 CDS YP_001670336.1 167035105 5871910 complement(4591398..4592291) 1 NC_010322.1 PFAM: dihydrodipicolinate synthetase; KEGG: pau:PA14_09730 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase 4592291 5871910 PputGB1_4110 Pseudomonas putida GB-1 dihydrodipicolinate synthetase YP_001670336.1 4591398 R 76869 CDS YP_001670337.1 167035106 5871911 complement(4592365..4593693) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pau:PA14_09740 putative MFS transporter; major facilitator superfamily transporter 4593693 5871911 PputGB1_4111 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670337.1 4592365 R 76869 CDS YP_001670338.1 167035107 5871912 complement(4593877..4595196) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pau:PA14_09750 putative oxidoreductase; FAD dependent oxidoreductase 4595196 5871912 PputGB1_4112 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001670338.1 4593877 R 76869 CDS YP_001670339.1 167035108 5871913 complement(4595259..4595975) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pau:PA14_09760 putative transcriptional regulator, GntR family; GntR family transcriptional regulator 4595975 5871913 PputGB1_4113 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670339.1 4595259 R 76869 CDS YP_001670340.1 167035109 5871914 complement(4596270..4597661) 1 NC_010322.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; GABA permease 4597661 5871914 PputGB1_4114 Pseudomonas putida GB-1 GABA permease YP_001670340.1 4596270 R 76869 CDS YP_001670341.1 167035110 5871915 4597897..4598235 1 NC_010322.1 KEGG: pfo:Pfl_1394 hypothetical protein; hypothetical protein 4598235 5871915 PputGB1_4115 Pseudomonas putida GB-1 hypothetical protein YP_001670341.1 4597897 D 76869 CDS YP_001670342.1 167035111 5871916 complement(4598306..4599514) 1 NC_010322.1 KEGG: pen:PSEEN4030 hypothetical protein; hypothetical protein 4599514 5871916 PputGB1_4116 Pseudomonas putida GB-1 hypothetical protein YP_001670342.1 4598306 R 76869 CDS YP_001670343.1 167035112 5871917 complement(4599556..4600008) 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN4031 hypothetical protein; hypothetical protein 4600008 5871917 PputGB1_4117 Pseudomonas putida GB-1 hypothetical protein YP_001670343.1 4599556 R 76869 CDS YP_001670344.1 167035113 5871918 4600150..4600743 1 NC_010322.1 PFAM: nitroreductase; KEGG: pen:PSEEN4032 nitroreductase; nitroreductase 4600743 5871918 PputGB1_4118 Pseudomonas putida GB-1 nitroreductase YP_001670344.1 4600150 D 76869 CDS YP_001670345.1 167035114 5871919 complement(4600802..4601734) 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4033 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4601734 5871919 PputGB1_4119 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001670345.1 4600802 R 76869 CDS YP_001670346.1 167035115 5871920 complement(4601737..4602030) 1 NC_010322.1 PFAM: protein of unknown function DUF709; KEGG: pen:PSEEN4034 hypothetical protein; hypothetical protein 4602030 5871920 PputGB1_4120 Pseudomonas putida GB-1 hypothetical protein YP_001670346.1 4601737 R 76869 CDS YP_001670347.1 167035116 5871921 complement(4602027..4603160) 1 NC_010322.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pen:PSEEN4035 ribonuclease D, processes tRNA; ribonuclease D 4603160 5871921 PputGB1_4121 Pseudomonas putida GB-1 ribonuclease D YP_001670347.1 4602027 R 76869 CDS YP_001670348.1 167035117 5871922 complement(4603300..4604937) 1 NC_010322.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pen:PSEEN4036 transmembrane sulfatase; sulfatase 4604937 5871922 PputGB1_4122 Pseudomonas putida GB-1 sulfatase YP_001670348.1 4603300 R 76869 CDS YP_001670349.1 167035118 5871923 4605191..4605427 1 NC_010322.1 KEGG: pen:PSEEN4038 hypothetical protein; hypothetical protein 4605427 5871923 PputGB1_4123 Pseudomonas putida GB-1 hypothetical protein YP_001670349.1 4605191 D 76869 CDS YP_001670350.1 167035119 5871924 complement(4605551..4606732) 1 NC_010322.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN4039 cystathionine gamma-synthase; cystathionine gamma-lyase 4606732 5871924 PputGB1_4124 Pseudomonas putida GB-1 cystathionine gamma-lyase YP_001670350.1 4605551 R 76869 CDS YP_001670351.1 167035120 5871925 4606825..4607286 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4041 transcriptional regulator, AsnC familiy; AsnC family transcriptional regulator 4607286 5871925 PputGB1_4125 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001670351.1 4606825 D 76869 CDS YP_001670352.1 167035121 5871926 complement(4607343..4609673) 1 NC_010322.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN4042 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 4609673 5871926 PputGB1_4126 Pseudomonas putida GB-1 oxidoreductase alpha (molybdopterin) subunit YP_001670352.1 4607343 R 76869 CDS YP_001670353.1 167035122 5871927 4609898..4610902 1 NC_010322.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4610902 moaA 5871927 moaA Pseudomonas putida GB-1 molybdenum cofactor biosynthesis protein A YP_001670353.1 4609898 D 76869 CDS YP_001670354.1 167035123 5871928 4610923..4611822 1 NC_010322.1 PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN4044 hypothetical protein; hypothetical protein 4611822 5871928 PputGB1_4128 Pseudomonas putida GB-1 hypothetical protein YP_001670354.1 4610923 D 76869 CDS YP_001670355.1 167035124 5871929 complement(4611835..4612374) 1 NC_010322.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN4045 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 4612374 5871929 PputGB1_4129 Pseudomonas putida GB-1 molybdenum cofactor biosynthesis protein B YP_001670355.1 4611835 R 76869 CDS YP_001670356.1 167035125 5871930 4612516..4613403 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4046 transcriptional regulator, LysR family; LysR family transcriptional regulator 4613403 5871930 PputGB1_4130 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670356.1 4612516 D 76869 CDS YP_001670357.1 167035126 5871931 complement(4613391..4614173) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pen:PSEEN4047 transcriptional regulator, AraC family; AraC family transcriptional regulator 4614173 5871931 PputGB1_4131 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670357.1 4613391 R 76869 CDS YP_001670358.1 167035127 5871932 4614434..4616047 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4049 amino acid transporter; amino acid permease-associated protein 4616047 5871932 PputGB1_4132 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670358.1 4614434 D 76869 CDS YP_001670359.1 167035128 5871933 4616071..4616997 1 NC_010322.1 PFAM: proline racemase; KEGG: pen:PSEEN4050 proline racemase; proline racemase 4616997 5871933 PputGB1_4133 Pseudomonas putida GB-1 proline racemase YP_001670359.1 4616071 D 76869 CDS YP_001670360.1 167035129 5871934 4617041..4617988 1 NC_010322.1 PFAM: dihydrodipicolinate synthetase; KEGG: pen:PSEEN4051 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 4617988 5871934 PputGB1_4134 Pseudomonas putida GB-1 dihydrodipicolinate synthetase YP_001670360.1 4617041 D 76869 CDS YP_001670361.1 167035130 5871935 4618083..4619660 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN4052 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase 4619660 5871935 PputGB1_4135 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001670361.1 4618083 D 76869 CDS YP_001670362.1 167035131 5871936 4619663..4620910 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4053 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase 4620910 5871936 PputGB1_4136 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001670362.1 4619663 D 76869 CDS YP_001670363.1 167035132 5871937 complement(4620944..4622035) 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN4054 xenobiotic reductase A; NADH:flavin oxidoreductase 4622035 5871937 PputGB1_4137 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001670363.1 4620944 R 76869 CDS YP_001670364.1 167035133 5871938 4622085..4622420 1 NC_010322.1 PFAM: regulatory protein ArsR; KEGG: pen:PSEEN4055 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 4622420 5871938 PputGB1_4138 Pseudomonas putida GB-1 ArsR family transcriptional regulator YP_001670364.1 4622085 D 76869 CDS YP_001670365.1 167035134 5871939 complement(4622425..4623048) 1 NC_010322.1 PFAM: regulatory protein ArsR; LexA DNA-binding domain protein; Helix-turn-helix type 11 domain protein; KEGG: xau:Xaut_2681 putative transcriptional regulator; putative transcriptional regulator 4623048 5871939 PputGB1_4139 Pseudomonas putida GB-1 putative transcriptional regulator YP_001670365.1 4622425 R 76869 CDS YP_001670366.1 167035135 5871940 complement(4623048..4623692) 1 NC_010322.1 KEGG: gme:Gmet_3376 hypothetical protein; hypothetical protein 4623692 5871940 PputGB1_4140 Pseudomonas putida GB-1 hypothetical protein YP_001670366.1 4623048 R 76869 CDS YP_001670367.1 167035136 5871941 complement(4623867..4625504) 1 NC_010322.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 4625504 5871941 PputGB1_4141 Pseudomonas putida GB-1 malate:quinone oxidoreductase YP_001670367.1 4623867 R 76869 CDS YP_001670368.1 167035137 5871942 complement(4625832..4626023) 1 NC_010322.1 KEGG: pen:PSEEN4057 hypothetical protein; hypothetical protein 4626023 5871942 PputGB1_4142 Pseudomonas putida GB-1 hypothetical protein YP_001670368.1 4625832 R 76869 CDS YP_001670369.1 167035138 5871943 4626212..4626829 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3330 transporter, LysE family; lysine exporter protein LysE/YggA 4626829 5871943 PputGB1_4143 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001670369.1 4626212 D 76869 CDS YP_001670370.1 167035139 5871944 complement(4626932..4628140) 1 NC_010322.1 hypothetical protein 4628140 5871944 PputGB1_4144 Pseudomonas putida GB-1 hypothetical protein YP_001670370.1 4626932 R 76869 CDS YP_001670371.1 167035140 5871945 complement(4628151..4630064) 1 NC_010322.1 KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein 4630064 5871945 PputGB1_4145 Pseudomonas putida GB-1 hypothetical protein YP_001670371.1 4628151 R 76869 CDS YP_001670372.1 167035141 5871946 complement(4630073..4630933) 1 NC_010322.1 PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: psp:PSPPH_0908 lipoprotein, putative; SH3 type 3 domain-containing protein 4630933 5871946 PputGB1_4146 Pseudomonas putida GB-1 SH3 type 3 domain-containing protein YP_001670372.1 4630073 R 76869 CDS YP_001670373.1 167035142 5871947 4631637..4632980 1 NC_010322.1 PFAM: integrase family protein; KEGG: maq:Maqu_0395 phage integrase family protein; integrase family protein 4632980 5871947 PputGB1_4147 Pseudomonas putida GB-1 integrase family protein YP_001670373.1 4631637 D 76869 CDS YP_001670374.1 167035143 5871948 4633131..4633298 1 NC_010322.1 PFAM: Prophage CP4-57 regulatory; KEGG: eli:ELI_04380 predicted transcriptional regulator; phage transcriptional regulator AlpA 4633298 5871948 PputGB1_4148 Pseudomonas putida GB-1 phage transcriptional regulator AlpA YP_001670374.1 4633131 D 76869 CDS YP_001670375.1 167035144 5871949 complement(4634649..4635275) 1 NC_010322.1 KEGG: pna:Pnap_4284 hypothetical protein; hypothetical protein 4635275 5871949 PputGB1_4149 Pseudomonas putida GB-1 hypothetical protein YP_001670375.1 4634649 R 76869 CDS YP_001670376.1 167035145 5871950 4635673..4636308 1 NC_010322.1 KEGG: rba:RB4971 hypothetical protein; hypothetical protein 4636308 5871950 PputGB1_4150 Pseudomonas putida GB-1 hypothetical protein YP_001670376.1 4635673 D 76869 CDS YP_001670377.1 167035146 5871951 complement(4637043..4638140) 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4638140 5871951 PputGB1_4151 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001670377.1 4637043 R 76869 CDS YP_001670378.1 167035147 5871952 complement(4638368..4639081) 1 NC_010322.1 hypothetical protein 4639081 5871952 PputGB1_4152 Pseudomonas putida GB-1 hypothetical protein YP_001670378.1 4638368 R 76869 CDS YP_001670379.1 167035148 5871953 4639471..4641195 1 NC_010322.1 PFAM: SMC domain protein; KEGG: ljo:LJ1055 predicted ATP-dependent endonuclease of the OLD family; SMC domain-containing protein 4641195 5871953 PputGB1_4153 Pseudomonas putida GB-1 SMC domain-containing protein YP_001670379.1 4639471 D 76869 CDS YP_001670380.1 167035149 5871954 4641198..4642835 1 NC_010322.1 PFAM: UvrD/REP helicase; KEGG: ljo:LJ1056 hypothetical protein; UvrD/REP helicase 4642835 5871954 PputGB1_4154 Pseudomonas putida GB-1 UvrD/REP helicase YP_001670380.1 4641198 D 76869 CDS YP_001670381.1 167035150 5871955 4642968..4643690 1 NC_010322.1 hypothetical protein 4643690 5871955 PputGB1_4155 Pseudomonas putida GB-1 hypothetical protein YP_001670381.1 4642968 D 76869 CDS YP_001670382.1 167035151 5871956 complement(4643852..4645759) 1 NC_010322.1 hypothetical protein 4645759 5871956 PputGB1_4156 Pseudomonas putida GB-1 hypothetical protein YP_001670382.1 4643852 R 76869 CDS YP_001670383.1 167035152 5871957 complement(4646396..4648240) 1 NC_010322.1 KEGG: gur:Gura_2918 hypothetical protein; hypothetical protein 4648240 5871957 PputGB1_4157 Pseudomonas putida GB-1 hypothetical protein YP_001670383.1 4646396 R 76869 CDS YP_001670384.1 167035153 5871958 complement(4648598..4648924) 1 NC_010322.1 KEGG: xcv:XCV2286 cytosine-specific DNA methyltransferase; hypothetical protein 4648924 5871958 PputGB1_4158 Pseudomonas putida GB-1 hypothetical protein YP_001670384.1 4648598 R 76869 CDS YP_001670385.1 167035154 5871960 4650658..4651335 1 NC_010322.1 hypothetical protein 4651335 5871960 PputGB1_4161 Pseudomonas putida GB-1 hypothetical protein YP_001670385.1 4650658 D 76869 CDS YP_001670386.1 167035155 5871961 4651437..4651676 1 NC_010322.1 KEGG: swi:Swit_0194 hypothetical protein; hypothetical protein 4651676 5871961 PputGB1_4162 Pseudomonas putida GB-1 hypothetical protein YP_001670386.1 4651437 D 76869 CDS YP_001670387.1 167035156 5871962 4652907..4653275 1 NC_010322.1 hypothetical protein 4653275 5871962 PputGB1_4163 Pseudomonas putida GB-1 hypothetical protein YP_001670387.1 4652907 D 76869 CDS YP_001670388.1 167035157 5871963 4653523..4654899 1 NC_010322.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: rme:Rmet_2839 hypothetical protein; relaxase/mobilization nuclease family protein 4654899 5871963 PputGB1_4164 Pseudomonas putida GB-1 relaxase/mobilization nuclease family protein YP_001670388.1 4653523 D 76869 CDS YP_001670389.1 167035158 5871964 complement(4655213..4655494) 1 NC_010322.1 KEGG: psb:Psyr_4647 hypothetical protein; hypothetical protein 4655494 5871964 PputGB1_4165 Pseudomonas putida GB-1 hypothetical protein YP_001670389.1 4655213 R 76869 CDS YP_001670390.1 167035159 5871965 complement(4655791..4659951) 1 NC_010322.1 KEGG: ses:SARI_03320 hypothetical protein; hypothetical protein 4659951 5871965 PputGB1_4166 Pseudomonas putida GB-1 hypothetical protein YP_001670390.1 4655791 R 76869 CDS YP_001670391.1 167035160 5871966 complement(4661257..4661616) 1 NC_010322.1 KEGG: pfo:Pfl_3014 hypothetical protein; hypothetical protein 4661616 5871966 PputGB1_4167 Pseudomonas putida GB-1 hypothetical protein YP_001670391.1 4661257 R 76869 CDS YP_001670392.1 167035161 5871967 4662495..4663325 1 NC_010322.1 KEGG: xau:Xaut_4002 hypothetical protein; hypothetical protein 4663325 5871967 PputGB1_4168 Pseudomonas putida GB-1 hypothetical protein YP_001670392.1 4662495 D 76869 CDS YP_001670393.1 167035162 5871968 complement(4663402..4663833) 1 NC_010322.1 KEGG: pst:PSPTO_4696 ISPsy13, transposase OrfB; hypothetical protein 4663833 5871968 PputGB1_4169 Pseudomonas putida GB-1 hypothetical protein YP_001670393.1 4663402 R 76869 CDS YP_001670394.1 167035163 5871969 4664438..4664818 1 NC_010322.1 KEGG: ajs:Ajs_0813 hypothetical protein; hypothetical protein 4664818 5871969 PputGB1_4170 Pseudomonas putida GB-1 hypothetical protein YP_001670394.1 4664438 D 76869 CDS YP_001670395.1 167035164 5871970 complement(4665350..4665814) 1 NC_010322.1 hypothetical protein 4665814 5871970 PputGB1_4171 Pseudomonas putida GB-1 hypothetical protein YP_001670395.1 4665350 R 76869 CDS YP_001670396.1 167035165 5871971 4666726..4667013 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: bpt:Bpet4560 predicted transcriptional regulator; XRE family transcriptional regulator 4667013 5871971 PputGB1_4172 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001670396.1 4666726 D 76869 CDS YP_001670397.1 167035166 5871972 4667623..4668270 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: asa:ASA_P5G021 putative partition protein; cobyrinic acid ac-diamide synthase 4668270 5871972 PputGB1_4173 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001670397.1 4667623 D 76869 CDS YP_001670398.1 167035167 5871973 4670584..4670829 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pmy:Pmen_1180 putative transcriptional regulator, XRE family; XRE family transcriptional regulator 4670829 5871973 PputGB1_4174 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001670398.1 4670584 D 76869 CDS YP_001670399.1 167035168 5871974 complement(4671144..4671584) 1 NC_010322.1 hypothetical protein 4671584 5871974 PputGB1_4175 Pseudomonas putida GB-1 hypothetical protein YP_001670399.1 4671144 R 76869 CDS YP_001670400.1 167035169 5871975 4671846..4672559 1 NC_010322.1 hypothetical protein 4672559 5871975 PputGB1_4176 Pseudomonas putida GB-1 hypothetical protein YP_001670400.1 4671846 D 76869 CDS YP_001670401.1 167035170 5871976 complement(4672662..4673396) 1 NC_010322.1 hypothetical protein 4673396 5871976 PputGB1_4177 Pseudomonas putida GB-1 hypothetical protein YP_001670401.1 4672662 R 76869 CDS YP_001670402.1 167035171 5871978 complement(4675604..4676314) 1 NC_010322.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 4676314 5871978 PputGB1_4178 Pseudomonas putida GB-1 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001670402.1 4675604 R 76869 CDS YP_001670403.1 167035172 5871979 complement(4676345..4677103) 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4062 beta-lactamase-like; beta-lactamase domain-containing protein 4677103 5871979 PputGB1_4179 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001670403.1 4676345 R 76869 CDS YP_001670404.1 167035173 5871980 complement(4677104..4678225) 1 NC_010322.1 KEGG: pen:PSEEN4063 lipoprotein; lipoprotein 4678225 5871980 PputGB1_4180 Pseudomonas putida GB-1 lipoprotein YP_001670404.1 4677104 R 76869 CDS YP_001670405.1 167035174 5871981 complement(4678241..4679128) 1 NC_010322.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 4679128 5871981 PputGB1_4181 Pseudomonas putida GB-1 dihydrodipicolinate synthase YP_001670405.1 4678241 R 76869 CDS YP_001670406.1 167035175 5871982 4679388..4679948 1 NC_010322.1 KEGG: pen:PSEEN4066 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 4679948 5871982 PputGB1_4182 Pseudomonas putida GB-1 glycine cleavage system transcriptional repressor YP_001670406.1 4679388 D 76869 CDS YP_001670407.1 167035176 5871983 4679960..4680433 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN4067 hypothetical protein; alkyl hydroperoxide reductase 4680433 5871983 PputGB1_4183 Pseudomonas putida GB-1 alkyl hydroperoxide reductase YP_001670407.1 4679960 D 76869 CDS YP_001670408.1 167035177 5871984 complement(4680469..4681539) 1 NC_010322.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN4068 permease (PerM family); hypothetical protein 4681539 5871984 PputGB1_4184 Pseudomonas putida GB-1 hypothetical protein YP_001670408.1 4680469 R 76869 CDS YP_001670409.1 167035178 5871985 complement(4681560..4681799) 1 NC_010322.1 PFAM: SirA family protein; KEGG: pen:PSEEN4069 hypothetical protein; SirA family protein 4681799 5871985 PputGB1_4185 Pseudomonas putida GB-1 SirA family protein YP_001670409.1 4681560 R 76869 CDS YP_001670410.1 167035179 5871986 4681921..4683357 1 NC_010322.1 PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN4070 peptidase M48 family; peptidase M48 Ste24p 4683357 5871986 PputGB1_4186 Pseudomonas putida GB-1 peptidase M48 Ste24p YP_001670410.1 4681921 D 76869 CDS YP_001670411.1 167035180 5871987 complement(4683389..4684447) 1 NC_010322.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 4684447 5871987 PputGB1_4187 Pseudomonas putida GB-1 quinolinate synthetase YP_001670411.1 4683389 R 76869 CDS YP_001670412.1 167035181 5871988 complement(4684683..4686191) 1 NC_010322.1 PFAM: protein of unknown function DUF945; KEGG: pen:PSEEN4072 hypothetical protein; hypothetical protein 4686191 5871988 PputGB1_4188 Pseudomonas putida GB-1 hypothetical protein YP_001670412.1 4684683 R 76869 CDS YP_001670413.1 167035182 5871989 4686636..4687988 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4074 amino acid transport protein (APC family); amino acid permease-associated protein 4687988 5871989 PputGB1_4189 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670413.1 4686636 D 76869 CDS YP_001670414.1 167035183 5871990 4688055..4690121 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4075 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4690121 5871990 PputGB1_4190 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001670414.1 4688055 D 76869 CDS YP_001670415.1 167035184 5871991 4690204..4691163 1 NC_010322.1 PFAM: cation efflux protein; KEGG: rpa:RPA2440 cation efflux protein; cation efflux protein 4691163 5871991 PputGB1_4191 Pseudomonas putida GB-1 cation efflux protein YP_001670415.1 4690204 D 76869 CDS YP_001670416.1 167035185 5871993 complement(4691363..4692049) 1 NC_010322.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pen:PSEEN4083 hypothetical protein; exsB protein 4692049 5871993 PputGB1_4192 Pseudomonas putida GB-1 exsB protein YP_001670416.1 4691363 R 76869 CDS YP_001670417.1 167035186 5871994 complement(4692067..4692714) 1 NC_010322.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN4084 radical activating enzyme; radical SAM domain-containing protein 4692714 5871994 PputGB1_4193 Pseudomonas putida GB-1 radical SAM domain-containing protein YP_001670417.1 4692067 R 76869 CDS YP_001670418.1 167035187 5871995 complement(4692882..4693688) 1 NC_010322.1 TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN4085 hypothetical protein; tol-pal system protein YbgF 4693688 5871995 PputGB1_4194 Pseudomonas putida GB-1 tol-pal system protein YbgF YP_001670418.1 4692882 R 76869 CDS YP_001670419.1 167035188 5871996 complement(4693695..4694195) 1 NC_010322.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN4086 peptidoglycan-associated lipoprotein precursor; peptidoglycan-associated lipoprotein 4694195 5871996 PputGB1_4195 Pseudomonas putida GB-1 peptidoglycan-associated lipoprotein YP_001670419.1 4693695 R 76869 CDS YP_001670420.1 167035189 5871997 complement(4694250..4695521) 1 NC_010322.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 4695521 tolB 5871997 tolB Pseudomonas putida GB-1 translocation protein TolB YP_001670420.1 4694250 R 76869 CDS YP_001670421.1 167035190 5871998 complement(4695548..4696666) 1 NC_010322.1 TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: pen:PSEEN4088 biopolymer transport protein TolA; protein TolA 4696666 5871998 PputGB1_4197 Pseudomonas putida GB-1 protein TolA YP_001670421.1 4695548 R 76869 CDS YP_001670422.1 167035191 5871999 complement(4696666..4697118) 1 NC_010322.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN4089 biopolymer transport protein TolR; protein TolR 4697118 5871999 PputGB1_4198 Pseudomonas putida GB-1 protein TolR YP_001670422.1 4696666 R 76869 CDS YP_001670423.1 167035192 5872000 complement(4697133..4697828) 1 NC_010322.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN4090 biopolymer transport protein TolQ; protein TolQ 4697828 5872000 PputGB1_4199 Pseudomonas putida GB-1 protein TolQ YP_001670423.1 4697133 R 76869 CDS YP_001670424.1 167035193 5872001 complement(4697831..4698283) 1 NC_010322.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4091 thioesterase; tol-pal system-associated acyl-CoA thioesterase 4698283 5872001 PputGB1_4200 Pseudomonas putida GB-1 tol-pal system-associated acyl-CoA thioesterase YP_001670424.1 4697831 R 76869 CDS YP_001670425.1 167035194 5872002 complement(4698409..4699455) 1 NC_010322.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4699455 ruvB 5872002 ruvB Pseudomonas putida GB-1 Holliday junction DNA helicase RuvB YP_001670425.1 4698409 R 76869 CDS YP_001670426.1 167035195 5872003 complement(4699452..4700069) 1 NC_010322.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4700069 ruvA 5872003 ruvA Pseudomonas putida GB-1 Holliday junction DNA helicase RuvA YP_001670426.1 4699452 R 76869 CDS YP_001670427.1 167035196 5872004 complement(4700179..4700703) 1 NC_010322.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 4700703 ruvC 5872004 ruvC Pseudomonas putida GB-1 Holliday junction resolvase YP_001670427.1 4700179 R 76869 CDS YP_001670428.1 167035197 5872005 complement(4700830..4701576) 1 NC_010322.1 PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN4095 hypothetical protein; hypothetical protein 4701576 5872005 PputGB1_4204 Pseudomonas putida GB-1 hypothetical protein YP_001670428.1 4700830 R 76869 CDS YP_001670429.1 167035198 5872006 complement(4701691..4703466) 1 NC_010322.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 4703466 aspS 5872006 aspS Pseudomonas putida GB-1 aspartyl-tRNA synthetase YP_001670429.1 4701691 R 76869 CDS YP_001670430.1 167035199 5872007 complement(4703560..4703781) 1 NC_010322.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pen:PSEEN4097 hypothetical protein; FmdB family regulatory protein 4703781 5872007 PputGB1_4206 Pseudomonas putida GB-1 FmdB family regulatory protein YP_001670430.1 4703560 R 76869 CDS YP_001670431.1 167035200 5872008 complement(4703874..4704203) 1 NC_010322.1 KEGG: pen:PSEEN4098 hypothetical protein; hypothetical protein 4704203 5872008 PputGB1_4207 Pseudomonas putida GB-1 hypothetical protein YP_001670431.1 4703874 R 76869 CDS YP_001670432.1 167035201 5872009 complement(4704341..4704814) 1 NC_010322.1 PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN4099 DNA-binding stress protein, Dps family; ferritin Dps family protein 4704814 5872009 PputGB1_4208 Pseudomonas putida GB-1 ferritin Dps family protein YP_001670432.1 4704341 R 76869 CDS YP_001670433.1 167035202 5872010 4705095..4705688 1 NC_010322.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4100 cold shock protein; cold-shock DNA-binding domain-containing protein 4705688 5872010 PputGB1_4209 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001670433.1 4705095 D 76869 CDS YP_001670434.1 167035203 5872011 complement(4705750..4705956) 1 NC_010322.1 PFAM: SlyX family protein; KEGG: pen:PSEEN4101 hypothetical protein; hypothetical protein 4705956 5872011 PputGB1_4210 Pseudomonas putida GB-1 hypothetical protein YP_001670434.1 4705750 R 76869 CDS YP_001670435.1 167035204 5872012 complement(4705958..4706377) 1 NC_010322.1 PFAM: histidine triad (HIT) protein; KEGG: pfo:Pfl_4417 histidine triad (HIT) protein; histidine triad (HIT) protein 4706377 5872012 PputGB1_4211 Pseudomonas putida GB-1 histidine triad (HIT) protein YP_001670435.1 4705958 R 76869 CDS YP_001670436.1 167035205 5872013 4707069..4708352 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 4708352 5872013 PputGB1_4212 Pseudomonas putida GB-1 outer membrane porin YP_001670436.1 4707069 D 76869 CDS YP_001670437.1 167035206 5872014 4708513..4710228 1 NC_010322.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4710228 5872014 PputGB1_4213 Pseudomonas putida GB-1 prolyl-tRNA synthetase YP_001670437.1 4708513 D 76869 CDS YP_001670438.1 167035207 5872015 4710249..4711202 1 NC_010322.1 KEGG: pen:PSEEN4106 lipoprotein; lipoprotein 4711202 5872015 PputGB1_4214 Pseudomonas putida GB-1 lipoprotein YP_001670438.1 4710249 D 76869 CDS YP_001670439.1 167035208 5872016 complement(4711229..4712293) 1 NC_010322.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 4712293 5872016 PputGB1_4215 Pseudomonas putida GB-1 DNA polymerase IV YP_001670439.1 4711229 R 76869 CDS YP_001670440.1 167035209 5872020 4713268..4715910 1 NC_010322.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: pen:PSEEN4110 hypothetical protein; hypothetical protein 4715910 5872020 PputGB1_4216 Pseudomonas putida GB-1 hypothetical protein YP_001670440.1 4713268 D 76869 CDS YP_001670441.1 167035210 5872021 4715910..4717202 1 NC_010322.1 PFAM: virulence factor family protein; KEGG: pen:PSEEN4111 hypothetical protein; virulence factor family protein 4717202 5872021 PputGB1_4217 Pseudomonas putida GB-1 virulence factor family protein YP_001670441.1 4715910 D 76869 CDS YP_001670442.1 167035211 5872022 complement(4717237..4719147) 1 NC_010322.1 PFAM: K potassium transporter; KEGG: pen:PSEEN4112 Kup system potassium uptake protein; K potassium transporter 4719147 5872022 PputGB1_4218 Pseudomonas putida GB-1 K potassium transporter YP_001670442.1 4717237 R 76869 CDS YP_001670443.1 167035212 5872023 4719383..4720714 1 NC_010322.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4720714 rimO 5872023 rimO Pseudomonas putida GB-1 30S ribosomal protein S12 methylthiotransferase YP_001670443.1 4719383 D 76869 CDS YP_001670444.1 167035213 5872024 complement(4720786..4721535) 1 NC_010322.1 KEGG: eba:ebA177 hypothetical protein; hypothetical protein 4721535 5872024 PputGB1_4220 Pseudomonas putida GB-1 hypothetical protein YP_001670444.1 4720786 R 76869 CDS YP_001670445.1 167035214 5872025 complement(4721590..4723305) 1 NC_010322.1 KEGG: eba:ebA176 hypothetical protein; hypothetical protein 4723305 5872025 PputGB1_4221 Pseudomonas putida GB-1 hypothetical protein YP_001670445.1 4721590 R 76869 CDS YP_001670446.1 167035215 5872026 complement(4723302..4724147) 1 NC_010322.1 KEGG: eba:ebA175 hypothetical protein; hypothetical protein 4724147 5872026 PputGB1_4222 Pseudomonas putida GB-1 hypothetical protein YP_001670446.1 4723302 R 76869 CDS YP_001670447.1 167035216 5872027 complement(4724232..4724858) 1 NC_010322.1 KEGG: pfo:Pfl_1971 hypothetical protein; hypothetical protein 4724858 5872027 PputGB1_4223 Pseudomonas putida GB-1 hypothetical protein YP_001670447.1 4724232 R 76869 CDS YP_001670448.1 167035217 5872028 4725057..4725512 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4114 acyltransferase, GNAT family; N-acetyltransferase GCN5 4725512 5872028 PputGB1_4224 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001670448.1 4725057 D 76869 CDS YP_001670449.1 167035218 5872029 4725632..4726342 1 NC_010322.1 PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN4116 hypothetical protein; RNA-binding S4 domain-containing protein 4726342 5872029 PputGB1_4225 Pseudomonas putida GB-1 RNA-binding S4 domain-containing protein YP_001670449.1 4725632 D 76869 CDS YP_001670450.1 167035219 5872030 4726392..4726853 1 NC_010322.1 PFAM: protein of unknown function DUF1456; KEGG: pen:PSEEN4117 hypothetical protein; hypothetical protein 4726853 5872030 PputGB1_4226 Pseudomonas putida GB-1 hypothetical protein YP_001670450.1 4726392 D 76869 CDS YP_001670451.1 167035220 5872031 4726860..4727552 1 NC_010322.1 PFAM: protein of unknown function UPF0066; KEGG: pen:PSEEN4118 hypothetical protein; hypothetical protein 4727552 5872031 PputGB1_4227 Pseudomonas putida GB-1 hypothetical protein YP_001670451.1 4726860 D 76869 CDS YP_001670452.1 167035221 5872032 complement(4727616..4728938) 1 NC_010322.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 4728938 5872032 PputGB1_4228 Pseudomonas putida GB-1 C4-dicarboxylate transporter DctA YP_001670452.1 4727616 R 76869 CDS YP_001670453.1 167035222 5872033 complement(4729256..4730602) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1346 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase 4730602 5872033 PputGB1_4229 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670453.1 4729256 R 76869 CDS YP_001670454.1 167035223 5872034 complement(4730599..4731324) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1345 transcriptional regulatory protein PhoP; two component transcriptional regulator 4731324 5872034 PputGB1_4230 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670454.1 4730599 R 76869 CDS YP_001670455.1 167035224 5872035 complement(4731407..4732012) 1 NC_010322.1 KEGG: pen:PSEEN1343 outer membrane protein H1; outer membrane protein H1 4732012 5872035 PputGB1_4231 Pseudomonas putida GB-1 outer membrane protein H1 YP_001670455.1 4731407 R 76869 CDS YP_001670456.1 167035225 5872036 4732143..4732934 1 NC_010322.1 PFAM: dienelactone hydrolase; KEGG: pen:PSEEN1342 hydrolase; probable dienelactone hydrolase; dienelactone hydrolase 4732934 5872036 PputGB1_4232 Pseudomonas putida GB-1 dienelactone hydrolase YP_001670456.1 4732143 D 76869 CDS YP_001670457.1 167035226 5872037 4733008..4733709 1 NC_010322.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: pen:PSEEN1341 phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase 4733709 5872037 PputGB1_4233 Pseudomonas putida GB-1 4'-phosphopantetheinyl transferase YP_001670457.1 4733008 D 76869 CDS YP_001670458.1 167035227 5872038 complement(4733713..4735320) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1340 sensory histidine kinase; integral membrane sensor signal transduction histidine kinase 4735320 5872038 PputGB1_4234 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670458.1 4733713 R 76869 CDS YP_001670459.1 167035228 5872039 complement(4735317..4736015) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1339 DNA-binding response regulator; two component transcriptional regulator 4736015 5872039 PputGB1_4235 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670459.1 4735317 R 76869 CDS YP_001670460.1 167035229 5872040 4736798..4739677 1 NC_010322.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 4739677 5872040 PputGB1_4236 Pseudomonas putida GB-1 ribonucleotide-diphosphate reductase subunit alpha YP_001670460.1 4736798 D 76869 CDS YP_001670461.1 167035230 5872041 4739816..4740001 1 NC_010322.1 hypothetical protein 4740001 5872041 PputGB1_4237 Pseudomonas putida GB-1 hypothetical protein YP_001670461.1 4739816 D 76869 CDS YP_001670462.1 167035231 5872042 4740448..4741698 1 NC_010322.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 4741698 5872042 PputGB1_4238 Pseudomonas putida GB-1 ribonucleotide-diphosphate reductase subunit beta YP_001670462.1 4740448 D 76869 CDS YP_001670463.1 167035232 5872043 4742245..4743483 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin 4743483 5872043 PputGB1_4239 Pseudomonas putida GB-1 outer membrane porin YP_001670463.1 4742245 D 76869 CDS YP_001670464.1 167035233 5872044 4743735..4744541 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pst:PSPTO_1053 hypothetical protein; NAD-dependent epimerase/dehydratase 4744541 5872044 PputGB1_4240 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001670464.1 4743735 D 76869 CDS YP_001670465.1 167035234 5872045 4744568..4745449 1 NC_010322.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pmy:Pmen_3300 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 4745449 5872045 PputGB1_4241 Pseudomonas putida GB-1 SMP-30/gluconolaconase/LRE domain-containing protein YP_001670465.1 4744568 D 76869 CDS YP_001670466.1 167035235 5872046 4745514..4746485 1 NC_010322.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfo:Pfl_3454 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 4746485 5872046 PputGB1_4242 Pseudomonas putida GB-1 TRAP dicarboxylate transporter subunit DctP YP_001670466.1 4745514 D 76869 CDS YP_001670467.1 167035236 5872047 4746552..4747079 1 NC_010322.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfo:Pfl_3455 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4747079 5872047 PputGB1_4243 Pseudomonas putida GB-1 tripartite ATP-independent periplasmic transporter DctQ YP_001670467.1 4746552 D 76869 CDS YP_001670468.1 167035237 5872048 4747080..4748360 1 NC_010322.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: psp:PSPPH_0933 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 4748360 5872048 PputGB1_4244 Pseudomonas putida GB-1 TRAP dicarboxylate transporter subunit DctM YP_001670468.1 4747080 D 76869 CDS YP_001670469.1 167035238 5872049 4748418..4749341 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: psp:PSPPH_0932 hypothetical protein; hypothetical protein 4749341 5872049 PputGB1_4245 Pseudomonas putida GB-1 hypothetical protein YP_001670469.1 4748418 D 76869 CDS YP_001670470.1 167035239 5872050 4749367..4750236 1 NC_010322.1 PFAM: Aldose 1-epimerase; KEGG: pst:PSPTO_1047 hypothetical protein; aldose 1-epimerase 4750236 5872050 PputGB1_4246 Pseudomonas putida GB-1 aldose 1-epimerase YP_001670470.1 4749367 D 76869 CDS YP_001670471.1 167035240 5872051 complement(4750286..4751575) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_5219 MFS transporter, phthalate permease family; major facilitator superfamily transporter 4751575 5872051 PputGB1_4247 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670471.1 4750286 R 76869 CDS YP_001670472.1 167035241 5872052 complement(4751739..4752635) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1324 transcriptional regulator, LysR family; LysR family transcriptional regulator 4752635 5872052 PputGB1_4248 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670472.1 4751739 R 76869 CDS YP_001670473.1 167035242 5872053 complement(4752708..4754744) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN1322 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit 4754744 5872053 PputGB1_4249 Pseudomonas putida GB-1 oxidoreductase FAD-binding subunit YP_001670473.1 4752708 R 76869 CDS YP_001670474.1 167035243 5872054 complement(4754772..4755401) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase; glutathione S-transferase domain-containing protein 4755401 5872054 PputGB1_4250 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001670474.1 4754772 R 76869 CDS YP_001670475.1 167035244 5872055 complement(4755538..4756089) 1 NC_010322.1 TIGRFAM: yecA family protein; KEGG: pen:PSEEN1320 hypothetical protein; yecA family protein 4756089 5872055 PputGB1_4251 Pseudomonas putida GB-1 yecA family protein YP_001670475.1 4755538 R 76869 CDS YP_001670476.1 167035245 5872056 complement(4756182..4757171) 1 NC_010322.1 PFAM: Asparaginase/glutaminase; KEGG: bov:BOV_1888 asparaginase family protein; asparaginase/glutaminase 4757171 5872056 PputGB1_4252 Pseudomonas putida GB-1 asparaginase/glutaminase YP_001670476.1 4756182 R 76869 CDS YP_001670477.1 167035246 5872057 complement(4757168..4757491) 1 NC_010322.1 KEGG: aau:AAur_3986 putative integral membrane protein; hypothetical protein 4757491 5872057 PputGB1_4253 Pseudomonas putida GB-1 hypothetical protein YP_001670477.1 4757168 R 76869 CDS YP_001670478.1 167035247 5872058 complement(4757840..4758736) 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2988 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4758736 5872058 PputGB1_4254 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001670478.1 4757840 R 76869 CDS YP_001670479.1 167035248 5872059 complement(4759145..4759369) 1 NC_010322.1 hypothetical protein 4759369 5872059 PputGB1_4255 Pseudomonas putida GB-1 hypothetical protein YP_001670479.1 4759145 R 76869 CDS YP_001670480.1 167035249 5872060 complement(4759941..4760414) 1 NC_010322.1 KEGG: bxe:Bxe_C1245 tryptophan 2-monooxygenase; hypothetical protein 4760414 5872060 PputGB1_4256 Pseudomonas putida GB-1 hypothetical protein YP_001670480.1 4759941 R 76869 CDS YP_001670481.1 167035250 5872061 complement(4760542..4762185) 1 NC_010322.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 4762185 5872061 PputGB1_4257 Pseudomonas putida GB-1 acetolactate synthase YP_001670481.1 4760542 R 76869 CDS YP_001670482.1 167035251 5872065 4767866..4768762 1 NC_010322.1 KEGG: pen:PSEEN1310 transporter, formate/nitrite family; formate/nitrate transporter 4768762 5872065 PputGB1_4258 Pseudomonas putida GB-1 formate/nitrate transporter YP_001670482.1 4767866 D 76869 CDS YP_001670483.1 167035252 5872066 complement(4768766..4769857) 1 NC_010322.1 KEGG: pen:PSEEN1309 zinc-dependent hydrolase; zinc-dependent hydrolase 4769857 5872066 PputGB1_4259 Pseudomonas putida GB-1 zinc-dependent hydrolase YP_001670483.1 4768766 R 76869 CDS YP_001670484.1 167035253 5872067 4769978..4771060 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: pen:PSEEN1308 hypothetical protein; diguanylate cyclase 4771060 5872067 PputGB1_4260 Pseudomonas putida GB-1 diguanylate cyclase YP_001670484.1 4769978 D 76869 CDS YP_001670485.1 167035254 5872068 4771112..4773697 1 NC_010322.1 KEGG: pen:PSEEN1307 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4773697 5872068 PputGB1_4261 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001670485.1 4771112 D 76869 CDS YP_001670486.1 167035255 5872069 complement(4773717..4774046) 1 NC_010322.1 KEGG: pen:PSEEN1306 hypothetical protein; hypothetical protein 4774046 5872069 PputGB1_4262 Pseudomonas putida GB-1 hypothetical protein YP_001670486.1 4773717 R 76869 CDS YP_001670487.1 167035256 5872070 complement(4774166..4775083) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1304 transcriptional regulator, LysR family; LysR family transcriptional regulator 4775083 5872070 PputGB1_4263 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670487.1 4774166 R 76869 CDS YP_001670488.1 167035257 5872071 4775194..4775952 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1303 oxidoreductase, short-chain alcohol dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4775952 5872071 PputGB1_4264 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001670488.1 4775194 D 76869 CDS YP_001670489.1 167035258 5872072 complement(4775995..4776861) 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1300 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 4776861 5872072 PputGB1_4265 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001670489.1 4775995 R 76869 CDS YP_001670490.1 167035259 5872073 complement(4776874..4777080) 1 NC_010322.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN1299 hypothetical protein; hypothetical protein 4777080 5872073 PputGB1_4266 Pseudomonas putida GB-1 hypothetical protein YP_001670490.1 4776874 R 76869 CDS YP_001670491.1 167035260 5872074 complement(4777067..4779055) 1 NC_010322.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN1298 hypothetical protein; fusaric acid resistance protein region 4779055 5872074 PputGB1_4267 Pseudomonas putida GB-1 fusaric acid resistance protein region YP_001670491.1 4777067 R 76869 CDS YP_001670492.1 167035261 5872075 complement(4779258..4779374) 1 NC_010322.1 KEGG: pen:PSEEN1297 hypothetical protein; hypothetical protein 4779374 5872075 PputGB1_4268 Pseudomonas putida GB-1 hypothetical protein YP_001670492.1 4779258 R 76869 CDS YP_001670493.1 167035262 5872076 complement(4779511..4779672) 1 NC_010322.1 KEGG: pen:PSEEN1296 hypothetical protein; hypothetical protein 4779672 5872076 PputGB1_4269 Pseudomonas putida GB-1 hypothetical protein YP_001670493.1 4779511 R 76869 CDS YP_001670494.1 167035263 5872077 complement(4779739..4780068) 1 NC_010322.1 KEGG: pen:PSEEN1295 hypothetical protein; hypothetical protein 4780068 5872077 PputGB1_4270 Pseudomonas putida GB-1 hypothetical protein YP_001670494.1 4779739 R 76869 CDS YP_001670495.1 167035264 5872078 complement(4780132..4780827) 1 NC_010322.1 KEGG: pen:PSEEN1294 hypothetical protein; hypothetical protein 4780827 5872078 PputGB1_4271 Pseudomonas putida GB-1 hypothetical protein YP_001670495.1 4780132 R 76869 CDS YP_001670496.1 167035265 5872079 4780990..4783836 1 NC_010322.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4783836 5872079 PputGB1_4272 Pseudomonas putida GB-1 ATP-dependent helicase HepA YP_001670496.1 4780990 D 76869 CDS YP_001670497.1 167035266 5872080 4784120..4786384 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN1292 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 4786384 5872080 PputGB1_4273 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001670497.1 4784120 D 76869 CDS YP_001670498.1 167035267 5872081 complement(4786284..4787171) 1 NC_010322.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pen:PSEEN1291 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 4787171 5872081 PputGB1_4274 Pseudomonas putida GB-1 3-hydroxyisobutyrate dehydrogenase YP_001670498.1 4786284 R 76869 CDS YP_001670499.1 167035268 5872082 complement(4787337..4787648) 1 NC_010322.1 KEGG: pen:PSEEN1288 hypothetical protein; hypothetical protein 4787648 5872082 PputGB1_4275 Pseudomonas putida GB-1 hypothetical protein YP_001670499.1 4787337 R 76869 CDS YP_001670500.1 167035269 5872083 4788008..4789123 1 NC_010322.1 PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN1286 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 4789123 5872083 PputGB1_4276 Pseudomonas putida GB-1 extracellular ligand-binding receptor YP_001670500.1 4788008 D 76869 CDS YP_001670501.1 167035270 5872084 4789310..4790233 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN1285 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4790233 5872084 PputGB1_4277 Pseudomonas putida GB-1 inner-membrane translocator YP_001670501.1 4789310 D 76869 CDS YP_001670502.1 167035271 5872085 4790230..4791486 1 NC_010322.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 4791486 livM 5872085 livM Pseudomonas putida GB-1 leucine/isoleucine/valine transporter permease subunit YP_001670502.1 4790230 D 76869 CDS YP_001670503.1 167035272 5872086 4791483..4792250 1 NC_010322.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 4792250 livG 5872086 livG Pseudomonas putida GB-1 leucine/isoleucine/valine transporter ATP-binding subunit YP_001670503.1 4791483 D 76869 CDS YP_001670504.1 167035273 5872087 4792251..4792952 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1282 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 4792952 5872087 PputGB1_4280 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670504.1 4792251 D 76869 CDS YP_001670505.1 167035274 5872088 4793059..4793733 1 NC_010322.1 KEGG: pen:PSEEN1281 lipoprotein; lipoprotein 4793733 5872088 PputGB1_4281 Pseudomonas putida GB-1 lipoprotein YP_001670505.1 4793059 D 76869 CDS YP_001670506.1 167035275 5872089 4793837..4795444 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN1280 FAD-dependent dehydrogenases; FAD dependent oxidoreductase 4795444 5872089 PputGB1_4282 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001670506.1 4793837 D 76869 CDS YP_001670507.1 167035276 5872090 4795741..4796916 1 NC_010322.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 4796916 nhaA 5872090 nhaA Pseudomonas putida GB-1 pH-dependent sodium/proton antiporter YP_001670507.1 4795741 D 76869 CDS YP_001670508.1 167035277 5872091 complement(4796986..4797450) 1 NC_010322.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1279 lipoprotein; 17 kDa surface antigen 4797450 5872091 PputGB1_4284 Pseudomonas putida GB-1 17 kDa surface antigen YP_001670508.1 4796986 R 76869 CDS YP_001670509.1 167035278 5872092 4797598..4797831 1 NC_010322.1 KEGG: pen:PSEEN1278 hypothetical protein; hypothetical protein 4797831 5872092 PputGB1_4285 Pseudomonas putida GB-1 hypothetical protein YP_001670509.1 4797598 D 76869 CDS YP_001670510.1 167035279 5872093 complement(4797946..4798593) 1 NC_010322.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 4798593 5872093 PputGB1_4286 Pseudomonas putida GB-1 pyridoxamine 5'-phosphate oxidase YP_001670510.1 4797946 R 76869 CDS YP_001670511.1 167035280 5872094 complement(4798612..4799589) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1276 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 4799589 5872094 PputGB1_4287 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001670511.1 4798612 R 76869 CDS YP_001670512.1 167035281 5872095 complement(4799689..4800834) 1 NC_010322.1 PFAM: beta-lactamase; KEGG: pen:PSEEN1275 beta-lactamase; beta-lactamase 4800834 5872095 PputGB1_4288 Pseudomonas putida GB-1 beta-lactamase YP_001670512.1 4799689 R 76869 CDS YP_001670513.1 167035282 5872096 complement(4800944..4803178) 1 NC_010322.1 KEGG: pen:PSEEN1274 hydrolase; beta-agarase 4803178 5872096 PputGB1_4289 Pseudomonas putida GB-1 beta-agarase YP_001670513.1 4800944 R 76869 CDS YP_001670514.1 167035283 5872097 complement(4803258..4805402) 1 NC_010322.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 4805402 dinG 5872097 dinG Pseudomonas putida GB-1 ATP-dependent DNA helicase DinG YP_001670514.1 4803258 R 76869 CDS YP_001670515.1 167035284 5872098 4805501..4805965 1 NC_010322.1 KEGG: pen:PSEEN1272 hypothetical protein; hypothetical protein 4805965 5872098 PputGB1_4291 Pseudomonas putida GB-1 hypothetical protein YP_001670515.1 4805501 D 76869 CDS YP_001670516.1 167035285 5872099 complement(4806037..4806795) 1 NC_010322.1 KEGG: pen:PSEEN1234 hypothetical protein; hypothetical protein 4806795 5872099 PputGB1_4292 Pseudomonas putida GB-1 hypothetical protein YP_001670516.1 4806037 R 76869 CDS YP_001670517.1 167035286 5872100 complement(4806788..4807063) 1 NC_010322.1 PFAM: protein of unknown function DUF1145; KEGG: pen:PSEEN1233 hypothetical protein; hypothetical protein 4807063 5872100 PputGB1_4293 Pseudomonas putida GB-1 hypothetical protein YP_001670517.1 4806788 R 76869 CDS YP_001670518.1 167035287 5872101 complement(4807162..4807881) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1232 outer memebrane protein, OmpA family; OmpA/MotB domain-containing protein 4807881 5872101 PputGB1_4294 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001670518.1 4807162 R 76869 CDS YP_001670519.1 167035288 5872102 complement(4807971..4808663) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1231 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 4808663 5872102 PputGB1_4295 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001670519.1 4807971 R 76869 CDS YP_001670520.1 167035289 5872103 4808823..4809317 1 NC_010322.1 KEGG: pen:PSEEN1230 hypothetical protein; hypothetical protein 4809317 5872103 PputGB1_4296 Pseudomonas putida GB-1 hypothetical protein YP_001670520.1 4808823 D 76869 CDS YP_001670521.1 167035290 5872104 4809320..4809796 1 NC_010322.1 PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1229 hypothetical protein; hypothetical protein 4809796 5872104 PputGB1_4297 Pseudomonas putida GB-1 hypothetical protein YP_001670521.1 4809320 D 76869 CDS YP_001670522.1 167035291 5872105 4809799..4810275 1 NC_010322.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN1228 hypothetical protein; water stress/hypersensitive response domain-containing protein 4810275 5872105 PputGB1_4298 Pseudomonas putida GB-1 water stress/hypersensitive response domain-containing protein YP_001670522.1 4809799 D 76869 CDS YP_001670523.1 167035292 5872106 4810283..4810480 1 NC_010322.1 PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1227 hypothetical protein; SecC motif-containing protein 4810480 5872106 PputGB1_4299 Pseudomonas putida GB-1 SecC motif-containing protein YP_001670523.1 4810283 D 76869 CDS YP_001670524.1 167035293 5872107 complement(4810511..4811413) 1 NC_010322.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: psb:Psyr_4321 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta 4811413 5872107 PputGB1_4300 Pseudomonas putida GB-1 pyridoxal-5'-phosphate-dependent protein subunit beta YP_001670524.1 4810511 R 76869 CDS YP_001670525.1 167035294 5872108 complement(4811410..4812621) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4774 hypothetical protein; major facilitator superfamily transporter 4812621 5872108 PputGB1_4301 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670525.1 4811410 R 76869 CDS YP_001670526.1 167035295 5872109 complement(4812618..4813406) 1 NC_010322.1 KEGG: psb:Psyr_4323 synthetase, putative; synthetase 4813406 5872109 PputGB1_4302 Pseudomonas putida GB-1 synthetase YP_001670526.1 4812618 R 76869 CDS YP_001670527.1 167035296 5872110 complement(4813403..4814107) 1 NC_010322.1 KEGG: psb:Psyr_4324 serine O-acetyltransferase; Serine O-acetyltransferase 4814107 5872110 PputGB1_4303 Pseudomonas putida GB-1 Serine O-acetyltransferase YP_001670527.1 4813403 R 76869 CDS YP_001670528.1 167035297 5872111 4814289..4815629 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: psb:Psyr_4325 regulatory protein, GntR:aminotransferase, class I and II; transcriptional regulator 4815629 5872111 PputGB1_4304 Pseudomonas putida GB-1 transcriptional regulator YP_001670528.1 4814289 D 76869 CDS YP_001670529.1 167035298 5872112 4815733..4818174 1 NC_010322.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN1226 penicillin amidase; penicillin amidase 4818174 5872112 PputGB1_4305 Pseudomonas putida GB-1 penicillin amidase YP_001670529.1 4815733 D 76869 CDS YP_001670530.1 167035299 5872113 4818310..4819326 1 NC_010322.1 KEGG: pmy:Pmen_2196 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; RNA procession exonuclease-like protein 4819326 5872113 PputGB1_4306 Pseudomonas putida GB-1 RNA procession exonuclease-like protein YP_001670530.1 4818310 D 76869 CDS YP_001670531.1 167035300 5872114 4819323..4820981 1 NC_010322.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 4820981 5872114 PputGB1_4307 Pseudomonas putida GB-1 ATP-dependent DNA ligase YP_001670531.1 4819323 D 76869 CDS YP_001670532.1 167035301 5872115 4821098..4822213 1 NC_010322.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pen:PSEEN1225 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 4822213 5872115 PputGB1_4308 Pseudomonas putida GB-1 succinylglutamate desuccinylase/aspartoacylase YP_001670532.1 4821098 D 76869 CDS YP_001670533.1 167035302 5872116 4822280..4824730 1 NC_010322.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pmy:Pmen_2194 DEAD/H associated domain protein; DEAD/DEAH box helicase 4824730 5872116 PputGB1_4309 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001670533.1 4822280 D 76869 CDS YP_001670534.1 167035303 5872117 4824727..4825377 1 NC_010322.1 KEGG: pmy:Pmen_2193 ICC-like phosphoesterase-like protein; ICC-like putative phosphoesterase 4825377 5872117 PputGB1_4310 Pseudomonas putida GB-1 ICC-like putative phosphoesterase YP_001670534.1 4824727 D 76869 CDS YP_001670535.1 167035304 5872118 complement(4825384..4825611) 1 NC_010322.1 KEGG: pen:PSEEN1224 hypothetical protein; hypothetical protein 4825611 5872118 PputGB1_4311 Pseudomonas putida GB-1 hypothetical protein YP_001670535.1 4825384 R 76869 CDS YP_001670536.1 167035305 5872119 complement(4825706..4826272) 1 NC_010322.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 4826272 dcd 5872119 dcd Pseudomonas putida GB-1 deoxycytidine triphosphate deaminase YP_001670536.1 4825706 R 76869 CDS YP_001670537.1 167035306 5872120 4826600..4826809 1 NC_010322.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1222 cold shock protein CapB; cold-shock DNA-binding domain-containing protein 4826809 5872120 PputGB1_4313 Pseudomonas putida GB-1 cold-shock DNA-binding domain-containing protein YP_001670537.1 4826600 D 76869 CDS YP_001670538.1 167035307 5872121 complement(4826940..4828034) 1 NC_010322.1 PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN1221 ATPase, Mrp family; hypothetical protein 4828034 5872121 PputGB1_4314 Pseudomonas putida GB-1 hypothetical protein YP_001670538.1 4826940 R 76869 CDS YP_001670539.1 167035308 5872122 4828193..4830232 1 NC_010322.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 4830232 metG 5872122 metG Pseudomonas putida GB-1 methionyl-tRNA synthetase YP_001670539.1 4828193 D 76869 CDS YP_001670540.1 167035309 5872123 4830321..4830869 1 NC_010322.1 KEGG: pen:PSEEN1219 electron transport complex protein RnfA; electron transport complex protein RnfA 4830869 5872123 PputGB1_4316 Pseudomonas putida GB-1 electron transport complex protein RnfA YP_001670540.1 4830321 D 76869 CDS YP_001670541.1 167035310 5872124 4830866..4831840 1 NC_010322.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pen:PSEEN1217 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D 4831840 5872124 PputGB1_4317 Pseudomonas putida GB-1 RnfABCDGE type electron transport complex subunit D YP_001670541.1 4830866 D 76869 CDS YP_001670542.1 167035311 5872125 4831837..4832439 1 NC_010322.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pen:PSEEN1216 electron transport complex protein RnfG; RnfABCDGE type electron transport complex subunit G 4832439 5872125 PputGB1_4318 Pseudomonas putida GB-1 RnfABCDGE type electron transport complex subunit G YP_001670542.1 4831837 D 76869 CDS YP_001670543.1 167035312 5872126 4832432..4832956 1 NC_010322.1 KEGG: pen:PSEEN1215 hypothetical protein; hypothetical protein 4832956 5872126 PputGB1_4319 Pseudomonas putida GB-1 hypothetical protein YP_001670543.1 4832432 D 76869 CDS YP_001670544.1 167035313 5872127 4832961..4833599 1 NC_010322.1 KEGG: pen:PSEEN1214 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 4833599 5872127 PputGB1_4320 Pseudomonas putida GB-1 endonuclease III YP_001670544.1 4832961 D 76869 CDS YP_001670545.1 167035314 5872128 4833704..4833880 1 NC_010322.1 KEGG: pen:PSEEN1213 hypothetical protein; hypothetical protein 4833880 5872128 PputGB1_4321 Pseudomonas putida GB-1 hypothetical protein YP_001670545.1 4833704 D 76869 CDS YP_001670546.1 167035315 5872129 complement(4833932..4834555) 1 NC_010322.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN1212 response regulator, LuxR family; two component LuxR family transcriptional regulator 4834555 5872129 PputGB1_4322 Pseudomonas putida GB-1 two component LuxR family transcriptional regulator YP_001670546.1 4833932 R 76869 CDS YP_001670547.1 167035316 5872130 4834922..4835413 1 NC_010322.1 KEGG: pen:PSEEN1211 hypothetical protein; hypothetical protein 4835413 5872130 PputGB1_4323 Pseudomonas putida GB-1 hypothetical protein YP_001670547.1 4834922 D 76869 CDS YP_001670548.1 167035317 5872131 complement(4835476..4836693) 1 NC_010322.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 4836693 5872131 PputGB1_4324 Pseudomonas putida GB-1 argininosuccinate synthase YP_001670548.1 4835476 R 76869 CDS YP_001670549.1 167035318 5872132 complement(4836850..4837776) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1209 outer membrane protein, OmpA/MotB family; OmpA/MotB domain-containing protein 4837776 5872132 PputGB1_4325 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001670549.1 4836850 R 76869 CDS YP_001670550.1 167035319 5872133 4837907..4838953 1 NC_010322.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 4838953 5872133 PputGB1_4326 Pseudomonas putida GB-1 dihydroorotase YP_001670550.1 4837907 D 76869 CDS YP_001670551.1 167035320 5872134 4838950..4839624 1 NC_010322.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 4839624 5872134 PputGB1_4327 Pseudomonas putida GB-1 ribonuclease T YP_001670551.1 4838950 D 76869 CDS YP_001670552.1 167035321 5872135 complement(4839794..4840396) 1 NC_010322.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1206 peroxiredoxin (alkyl hydroperoxide reductase C); alkyl hydroperoxide reductase 4840396 5872135 PputGB1_4328 Pseudomonas putida GB-1 alkyl hydroperoxide reductase YP_001670552.1 4839794 R 76869 CDS YP_001670553.1 167035322 5872136 4840620..4840838 1 NC_010322.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1205 bacterioferritin-associated ferredoxin Bfd; BFD/(2Fe-2S)-binding domain-containing protein 4840838 5872136 PputGB1_4329 Pseudomonas putida GB-1 BFD/(2Fe-2S)-binding domain-containing protein YP_001670553.1 4840620 D 76869 CDS YP_001670554.1 167035323 5872137 4841040..4841513 1 NC_010322.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN1204 bacterioferritin; bacterioferritin 4841513 5872137 PputGB1_4330 Pseudomonas putida GB-1 bacterioferritin YP_001670554.1 4841040 D 76869 CDS YP_001670555.1 167035324 5872138 complement(4841571..4841906) 1 NC_010322.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pen:PSEEN1203 hypothetical protein; glutaredoxin-like protein 4841906 5872138 PputGB1_4331 Pseudomonas putida GB-1 glutaredoxin-like protein YP_001670555.1 4841571 R 76869 CDS YP_001670556.1 167035325 5872139 complement(4841998..4844106) 1 NC_010322.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1202 oxidoreductase molybdopterin-binding; molydopterin dinucleotide-binding region 4844106 5872139 PputGB1_4332 Pseudomonas putida GB-1 molydopterin dinucleotide-binding region YP_001670556.1 4841998 R 76869 CDS YP_001670557.1 167035326 5872140 4844483..4845403 1 NC_010322.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 4845403 5872140 PputGB1_4333 Pseudomonas putida GB-1 ornithine carbamoyltransferase YP_001670557.1 4844483 D 76869 CDS YP_001670558.1 167035327 5872141 4845400..4846509 1 NC_010322.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1200 ABC transporter, ATP-binding protein; ABC transporter-like protein 4846509 5872141 PputGB1_4334 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670558.1 4845400 D 76869 CDS YP_001670559.1 167035328 5872142 complement(4846546..4847016) 1 NC_010322.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN1199 hypothetical protein; ybaK/ebsC protein 4847016 5872142 PputGB1_4335 Pseudomonas putida GB-1 ybaK/ebsC protein YP_001670559.1 4846546 R 76869 CDS YP_001670560.1 167035329 5872143 4847319..4848170 1 NC_010322.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pen:PSEEN1198 glycerol uptake facilitator protein; MIP family channel protein 4848170 5872143 PputGB1_4336 Pseudomonas putida GB-1 MIP family channel protein YP_001670560.1 4847319 D 76869 CDS YP_001670561.1 167035330 5872144 4848221..4849720 1 NC_010322.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4849720 glpK 5872144 glpK Pseudomonas putida GB-1 glycerol kinase YP_001670561.1 4848221 D 76869 CDS YP_001670562.1 167035331 5872145 4849822..4850577 1 NC_010322.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN1196 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator 4850577 5872145 PputGB1_4338 Pseudomonas putida GB-1 DeoR family transcriptional regulator YP_001670562.1 4849822 D 76869 CDS YP_001670563.1 167035332 5872146 4850751..4852277 1 NC_010322.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 4852277 glpD 5872146 glpD Pseudomonas putida GB-1 glycerol-3-phosphate dehydrogenase YP_001670563.1 4850751 D 76869 CDS YP_001670564.1 167035333 5872147 complement(4852335..4856714) 1 NC_010322.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 4856714 5872147 PputGB1_4340 Pseudomonas putida GB-1 hypothetical protein YP_001670564.1 4852335 R 76869 CDS YP_001670565.1 167035334 5872148 4857053..4857970 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1193 glutamate/aspartate ABC transporter, periplasmic binding protein; extracellular solute-binding protein 4857970 5872148 PputGB1_4341 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001670565.1 4857053 D 76869 CDS YP_001670566.1 167035335 5872149 4858116..4858862 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1192 glutamate/aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 4858862 5872149 PputGB1_4342 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670566.1 4858116 D 76869 CDS YP_001670567.1 167035336 5872150 4858863..4859534 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1191 glutamate-aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 4859534 5872150 PputGB1_4343 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670567.1 4858863 D 76869 CDS YP_001670568.1 167035337 5872151 4859531..4860265 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1190 glutamate-aspartate ABC transporter, ATP-binding protein; ABC transporter-like protein 4860265 5872151 PputGB1_4344 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670568.1 4859531 D 76869 CDS YP_001670569.1 167035338 5872152 4860335..4862239 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1189 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4862239 5872152 PputGB1_4345 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670569.1 4860335 D 76869 CDS YP_001670570.1 167035339 5872153 4862236..4863564 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN1188 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 4863564 5872153 PputGB1_4346 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001670570.1 4862236 D 76869 CDS YP_001670571.1 167035340 5872154 4863590..4863925 1 NC_010322.1 PFAM: GlpM family protein; KEGG: pen:PSEEN1187 membrane protein required for efficient alginate biosynthesis; GlpM family protein 4863925 5872154 PputGB1_4347 Pseudomonas putida GB-1 GlpM family protein YP_001670571.1 4863590 D 76869 CDS YP_001670572.1 167035341 5872155 complement(4863946..4864941) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1185 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4864941 5872155 PputGB1_4348 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670572.1 4863946 R 76869 CDS YP_001670573.1 167035342 5872156 4865138..4866055 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1184 transcriptional regulator MetR; LysR family transcriptional regulator 4866055 5872156 PputGB1_4349 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670573.1 4865138 D 76869 CDS YP_001670574.1 167035343 5872157 complement(4866039..4866452) 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 4866452 5872157 PputGB1_4350 Pseudomonas putida GB-1 NUDIX hydrolase YP_001670574.1 4866039 R 76869 CDS YP_001670575.1 167035344 5872158 4866616..4870905 1 NC_010322.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1182 ATP-dependent DNA helicase Lhr; DEAD/DEAH box helicase 4870905 5872158 PputGB1_4351 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001670575.1 4866616 D 76869 CDS YP_001670576.1 167035345 5872159 4871037..4872656 1 NC_010322.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN1180 ferredoxin-dependent glutamate synthase; glutamate synthase 4872656 5872159 PputGB1_4352 Pseudomonas putida GB-1 glutamate synthase YP_001670576.1 4871037 D 76869 CDS YP_001670577.1 167035346 5872160 complement(4872697..4874115) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1179 amino acid permease; amino acid permease-associated protein 4874115 5872160 PputGB1_4353 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670577.1 4872697 R 76869 CDS YP_001670578.1 167035347 5872161 4874536..4877685 1 NC_010322.1 KEGG: pen:PSEEN1178 membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase 4877685 5872161 PputGB1_4354 Pseudomonas putida GB-1 membrane carboxypeptidase YP_001670578.1 4874536 D 76869 CDS YP_001670579.1 167035348 5872162 4877775..4878320 1 NC_010322.1 PFAM: transcriptional regulator PadR family protein; KEGG: pen:PSEEN1177 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 4878320 5872162 PputGB1_4355 Pseudomonas putida GB-1 PadR-like family transcriptional regulator YP_001670579.1 4877775 D 76869 CDS YP_001670580.1 167035349 5872163 4878313..4879074 1 NC_010322.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN1176 iron-chelator utilization protein; FAD-binding 9 siderophore-interacting domain-containing protein 4879074 5872163 PputGB1_4356 Pseudomonas putida GB-1 FAD-binding 9 siderophore-interacting domain-containing protein YP_001670580.1 4878313 D 76869 CDS YP_001670581.1 167035350 5872164 complement(4879132..4879767) 1 NC_010322.1 KEGG: pen:PSEEN1175 hypothetical protein; hypothetical protein 4879767 5872164 PputGB1_4357 Pseudomonas putida GB-1 hypothetical protein YP_001670581.1 4879132 R 76869 CDS YP_001670582.1 167035351 5872165 complement(4879769..4879990) 1 NC_010322.1 KEGG: pen:PSEEN1174 hypothetical protein; hypothetical protein 4879990 5872165 PputGB1_4358 Pseudomonas putida GB-1 hypothetical protein YP_001670582.1 4879769 R 76869 CDS YP_001670583.1 167035352 5872166 4880155..4882203 1 NC_010322.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1173 TonB-dependent receptor; TonB-dependent receptor 4882203 5872166 PputGB1_4359 Pseudomonas putida GB-1 TonB-dependent receptor YP_001670583.1 4880155 D 76869 CDS YP_001670584.1 167035353 5872167 4882422..4883756 1 NC_010322.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN1171 porin B precursor (outer membrane protein D1) (glucose porin); carbohydrate-selective porin OprB 4883756 5872167 PputGB1_4360 Pseudomonas putida GB-1 carbohydrate-selective porin OprB YP_001670584.1 4882422 D 76869 CDS YP_001670585.1 167035354 5872168 4883786..4886197 1 NC_010322.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1170 glucose dehydrogenase Gcd; PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 4886197 5872168 PputGB1_4361 Pseudomonas putida GB-1 PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein YP_001670585.1 4883786 D 76869 CDS YP_001670586.1 167035355 5872169 4886408..4888825 1 NC_010322.1 KEGG: pen:PSEEN4367 DNA-binding ATP-dependent protease La-2; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 4888825 5872169 PputGB1_4362 Pseudomonas putida GB-1 ATP-dependent protease La YP_001670586.1 4886408 D 76869 CDS YP_001670587.1 167035356 5872170 4888934..4889326 1 NC_010322.1 KEGG: pfl:PFL_4924 lipoprotein, putative; putative lipoprotein 4889326 5872170 PputGB1_4363 Pseudomonas putida GB-1 putative lipoprotein YP_001670587.1 4888934 D 76869 CDS YP_001670588.1 167035357 5872171 complement(4889333..4890268) 1 NC_010322.1 KEGG: psb:Psyr_3990 hypothetical protein; hypothetical protein 4890268 5872171 PputGB1_4364 Pseudomonas putida GB-1 hypothetical protein YP_001670588.1 4889333 R 76869 CDS YP_001670589.1 167035358 5872172 complement(4890270..4891460) 1 NC_010322.1 KEGG: plu:plu3075 hypothetical protein; hypothetical protein 4891460 5872172 PputGB1_4365 Pseudomonas putida GB-1 hypothetical protein YP_001670589.1 4890270 R 76869 CDS YP_001670590.1 167035359 5872173 4891600..4892406 1 NC_010322.1 TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4372 methyltransferase; methyltransferase 4892406 5872173 PputGB1_4366 Pseudomonas putida GB-1 methyltransferase YP_001670590.1 4891600 D 76869 CDS YP_001670591.1 167035360 5872174 4892403..4893359 1 NC_010322.1 TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; KEGG: pen:PSEEN4373 methyltransferase; methyltransferase 4893359 5872174 PputGB1_4367 Pseudomonas putida GB-1 methyltransferase YP_001670591.1 4892403 D 76869 CDS YP_001670592.1 167035361 5872175 complement(4893429..4893632) 1 NC_010322.1 KEGG: pen:PSEEN4374 hypothetical protein; hypothetical protein 4893632 5872175 PputGB1_4368 Pseudomonas putida GB-1 hypothetical protein YP_001670592.1 4893429 R 76869 CDS YP_001670593.1 167035362 5872176 4893872..4894546 1 NC_010322.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4285 heavy-metal DNA-binding response regulator CzrR; two component heavy metal response transcriptional regulator 4894546 5872176 PputGB1_4369 Pseudomonas putida GB-1 two component heavy metal response transcriptional regulator YP_001670593.1 4893872 D 76869 CDS YP_001670594.1 167035363 5872177 4894543..4895925 1 NC_010322.1 KEGG: pen:PSEEN4286 heavy metal sensor histidine kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 4895925 5872177 PputGB1_4370 Pseudomonas putida GB-1 heavy metal sensor signal transduction histidine kinase YP_001670594.1 4894543 D 76869 CDS YP_001670595.1 167035364 5872178 complement(4895972..4896712) 1 NC_010322.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 4896712 5872178 PputGB1_4371 Pseudomonas putida GB-1 pyridoxine 5'-phosphate synthase YP_001670595.1 4895972 R 76869 CDS YP_001670596.1 167035365 5872179 complement(4896756..4897439) 1 NC_010322.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 4897439 recO 5872179 recO Pseudomonas putida GB-1 DNA repair protein RecO YP_001670596.1 4896756 R 76869 CDS YP_001670597.1 167035366 5872180 complement(4897564..4898466) 1 NC_010322.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 4898466 era 5872180 era Pseudomonas putida GB-1 GTP-binding protein Era YP_001670597.1 4897564 R 76869 CDS YP_001670598.1 167035367 5872181 complement(4898459..4899148) 1 NC_010322.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 4899148 rnc 5872181 rnc Pseudomonas putida GB-1 ribonuclease III YP_001670598.1 4898459 R 76869 CDS YP_001670599.1 167035368 5872182 complement(4899312..4900166) 1 NC_010322.1 KEGG: pen:PSEEN4291 leader peptidase (signal peptidase I) , serine protease; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 4900166 5872182 PputGB1_4375 Pseudomonas putida GB-1 signal peptidase I YP_001670599.1 4899312 R 76869 CDS YP_001670600.1 167035369 5872183 complement(4900172..4901962) 1 NC_010322.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 4901962 5872183 PputGB1_4376 Pseudomonas putida GB-1 GTP-binding protein LepA YP_001670600.1 4900172 R 76869 CDS YP_001670601.1 167035370 5872184 complement(4902153..4903586) 1 NC_010322.1 KEGG: pen:PSEEN4293 serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 4903586 5872184 PputGB1_4377 Pseudomonas putida GB-1 protease Do YP_001670601.1 4902153 R 76869 CDS YP_001670602.1 167035371 5872185 complement(4903763..4904728) 1 NC_010322.1 PFAM: MucB/RseB family protein; KEGG: pen:PSEEN4294 sigma factor AlgU regulatory protein MucB; sigma E regulatory protein MucB/RseB 4904728 5872185 PputGB1_4378 Pseudomonas putida GB-1 sigma E regulatory protein MucB/RseB YP_001670602.1 4903763 R 76869 CDS YP_001670603.1 167035372 5872186 complement(4904741..4905331) 1 NC_010322.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: pen:PSEEN4295 sigma factor AlgU negative regulatory protein MucA; anti sigma-E protein, RseA 4905331 5872186 PputGB1_4379 Pseudomonas putida GB-1 anti sigma-E protein, RseA YP_001670603.1 4904741 R 76869 CDS YP_001670604.1 167035373 5872187 complement(4905363..4905944) 1 NC_010322.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 4905944 algU 5872187 algU Pseudomonas putida GB-1 RNA polymerase sigma factor AlgU YP_001670604.1 4905363 R 76869 CDS YP_001670605.1 167035374 5872188 4906380..4907987 1 NC_010322.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 4907987 5872188 PputGB1_4381 Pseudomonas putida GB-1 L-aspartate oxidase YP_001670605.1 4906380 D 76869 CDS YP_001670606.1 167035375 5872189 complement(4908602..4908841) 1 NC_010322.1 hypothetical protein 4908841 5872189 PputGB1_4382 Pseudomonas putida GB-1 hypothetical protein YP_001670606.1 4908602 R 76869 CDS YP_001670607.1 167035376 5872190 complement(4909799..4910392) 1 NC_010322.1 hypothetical protein 4910392 5872190 PputGB1_4383 Pseudomonas putida GB-1 hypothetical protein YP_001670607.1 4909799 R 76869 CDS YP_001670608.1 167035377 5872191 complement(4910443..4911882) 1 NC_010322.1 PFAM: integrase family protein; KEGG: eca:ECA2306 probable phage integrase; integrase family protein 4911882 5872191 PputGB1_4384 Pseudomonas putida GB-1 integrase family protein YP_001670608.1 4910443 R 76869 CDS YP_001670609.1 167035378 5872192 4911968..4912105 1 NC_010322.1 KEGG: pen:PSEEN4297 L-aspartate oxidase (quinolinate synthetase B); L-aspartate oxidase 4912105 5872192 PputGB1_4385 Pseudomonas putida GB-1 L-aspartate oxidase YP_001670609.1 4911968 D 76869 CDS YP_001670610.1 167035379 5872193 complement(4912188..4912652) 1 NC_010322.1 KEGG: pen:PSEEN4298 hypothetical protein; hypothetical protein 4912652 5872193 PputGB1_4386 Pseudomonas putida GB-1 hypothetical protein YP_001670610.1 4912188 R 76869 CDS YP_001670611.1 167035380 5872194 complement(4912636..4912890) 1 NC_010322.1 PFAM: protein of unknown function DUF339; KEGG: pen:PSEEN4299 hypothetical protein; hypothetical protein 4912890 5872194 PputGB1_4387 Pseudomonas putida GB-1 hypothetical protein YP_001670611.1 4912636 R 76869 CDS YP_001670612.1 167035381 5872195 4913024..4913965 1 NC_010322.1 TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pen:PSEEN4300 hypothetical protein; folate-binding protein YgfZ 4913965 5872195 PputGB1_4388 Pseudomonas putida GB-1 folate-binding protein YgfZ YP_001670612.1 4913024 D 76869 CDS YP_001670613.1 167035382 5872196 4914015..4914827 1 NC_010322.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4301 hypothetical protein; putative signal transduction protein 4914827 5872196 PputGB1_4389 Pseudomonas putida GB-1 putative signal transduction protein YP_001670613.1 4914015 D 76869 CDS YP_001670614.1 167035383 5872197 complement(4914853..4916232) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pen:PSEEN4302 sensor histidine kinase TctE; integral membrane sensor signal transduction histidine kinase 4916232 5872197 PputGB1_4390 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670614.1 4914853 R 76869 CDS YP_001670615.1 167035384 5872198 complement(4916225..4916896) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4303 DNA-binding response regulator TctD; two component transcriptional regulator 4916896 5872198 PputGB1_4391 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670615.1 4916225 R 76869 CDS YP_001670616.1 167035385 5872199 4917097..4918386 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4304 porin, OprD family; outer membrane porin 4918386 5872199 PputGB1_4392 Pseudomonas putida GB-1 outer membrane porin YP_001670616.1 4917097 D 76869 CDS YP_001670617.1 167035386 5872200 4918433..4919413 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4305 tricarboxylate transport protein TctC; hypothetical protein 4919413 5872200 PputGB1_4393 Pseudomonas putida GB-1 hypothetical protein YP_001670617.1 4918433 D 76869 CDS YP_001670618.1 167035387 5872201 4919598..4920056 1 NC_010322.1 KEGG: pen:PSEEN4306 tricarboxylate transport protein TctB; tricarboxylate transport protein TctB 4920056 5872201 PputGB1_4394 Pseudomonas putida GB-1 tricarboxylate transport protein TctB YP_001670618.1 4919598 D 76869 CDS YP_001670619.1 167035388 5872202 4920060..4921574 1 NC_010322.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: pen:PSEEN4307 tricarboxylate transport protein TctA; hypothetical protein 4921574 5872202 PputGB1_4395 Pseudomonas putida GB-1 hypothetical protein YP_001670619.1 4920060 D 76869 CDS YP_001670620.1 167035389 5872203 4921567..4922598 1 NC_010322.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: pen:PSEEN4308 ammonia monooxygenase; membrane protein AbrB 4922598 5872203 PputGB1_4396 Pseudomonas putida GB-1 membrane protein AbrB YP_001670620.1 4921567 D 76869 CDS YP_001670621.1 167035390 5872204 complement(4922657..4923349) 1 NC_010322.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 4923349 5872204 PputGB1_4397 Pseudomonas putida GB-1 uracil-DNA glycosylase YP_001670621.1 4922657 R 76869 CDS YP_001670622.1 167035391 5872205 4923476..4924582 1 NC_010322.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN4313 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4924582 5872205 PputGB1_4398 Pseudomonas putida GB-1 enoyl-CoA hydratase/isomerase YP_001670622.1 4923476 D 76869 CDS YP_001670623.1 167035392 5872206 complement(4924628..4925077) 1 NC_010322.1 KEGG: pen:PSEEN4314 lipoprotein; lipoprotein 4925077 5872206 PputGB1_4399 Pseudomonas putida GB-1 lipoprotein YP_001670623.1 4924628 R 76869 CDS YP_001670624.1 167035393 5872207 4925290..4926771 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN4315 diguanylate cyclase (GGDEF domain); diguanylate cyclase 4926771 5872207 PputGB1_4400 Pseudomonas putida GB-1 diguanylate cyclase YP_001670624.1 4925290 D 76869 CDS YP_001670625.1 167035394 5872208 4926764..4926976 1 NC_010322.1 KEGG: pen:PSEEN4316 hypothetical protein; hypothetical protein 4926976 5872208 PputGB1_4401 Pseudomonas putida GB-1 hypothetical protein YP_001670625.1 4926764 D 76869 CDS YP_001670626.1 167035395 5872209 4926985..4927677 1 NC_010322.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN4317 16S rRNA pseudouridylate 516 synthase; pseudouridine synthase 4927677 5872209 PputGB1_4402 Pseudomonas putida GB-1 pseudouridine synthase YP_001670626.1 4926985 D 76869 CDS YP_001670627.1 167035396 5872210 4928126..4929013 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4319 (R)-3-hydroxydecanoyl-ACP:CoA transacylase (3-hydroxyacyl-CoA-acyl carrier protein transferase); alpha/beta hydrolase fold family protein 4929013 5872210 PputGB1_4403 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670627.1 4928126 D 76869 CDS YP_001670628.1 167035397 5872212 4929411..4931117 1 NC_010322.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4320 sulfate transporter; sulfate transporter 4931117 5872212 PputGB1_4404 Pseudomonas putida GB-1 sulfate transporter YP_001670628.1 4929411 D 76869 CDS YP_001670629.1 167035398 5872213 4931156..4932211 1 NC_010322.1 KEGG: pen:PSEEN4330 hypothetical protein; hypothetical protein 4932211 5872213 PputGB1_4405 Pseudomonas putida GB-1 hypothetical protein YP_001670629.1 4931156 D 76869 CDS YP_001670630.1 167035399 5872214 complement(4932245..4933459) 1 NC_010322.1 KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 4933459 5872214 PputGB1_4406 Pseudomonas putida GB-1 hypothetical protein YP_001670630.1 4932245 R 76869 CDS YP_001670631.1 167035400 5872215 complement(4933522..4934139) 1 NC_010322.1 PFAM: protein of unknown function DUF477; KEGG: pen:PSEEN4338 hypothetical protein; hypothetical protein 4934139 5872215 PputGB1_4407 Pseudomonas putida GB-1 hypothetical protein YP_001670631.1 4933522 R 76869 CDS YP_001670632.1 167035401 5872216 4934326..4936617 1 NC_010322.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pen:PSEEN4339 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase family protein 4936617 5872216 PputGB1_4408 Pseudomonas putida GB-1 glycoside hydrolase family protein YP_001670632.1 4934326 D 76869 CDS YP_001670633.1 167035402 5872217 4936703..4938460 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4340 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4938460 5872217 PputGB1_4409 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670633.1 4936703 D 76869 CDS YP_001670634.1 167035403 5872218 4938454..4939788 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN4341 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 4939788 5872218 PputGB1_4410 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001670634.1 4938454 D 76869 CDS YP_001670635.1 167035404 5872219 4940031..4941350 1 NC_010322.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4342 dicarboxylate transport protein (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 4941350 5872219 PputGB1_4411 Pseudomonas putida GB-1 major facilitator superfamily metabolite/H(+) symporter YP_001670635.1 4940031 D 76869 CDS YP_001670636.1 167035405 5872220 complement(4941551..4942303) 1 NC_010322.1 PFAM: protein of unknown function DUF347; KEGG: pen:PSEEN4344 hypothetical protein; hypothetical protein 4942303 5872220 PputGB1_4412 Pseudomonas putida GB-1 hypothetical protein YP_001670636.1 4941551 R 76869 CDS YP_001670637.1 167035406 5872221 4942645..4942932 1 NC_010322.1 KEGG: pen:PSEEN4345 hypothetical protein; hypothetical protein 4942932 5872221 PputGB1_4413 Pseudomonas putida GB-1 hypothetical protein YP_001670637.1 4942645 D 76869 CDS YP_001670638.1 167035407 5872222 4943051..4943656 1 NC_010322.1 KEGG: pen:PSEEN4346 hypothetical protein; hypothetical protein 4943656 5872222 PputGB1_4414 Pseudomonas putida GB-1 hypothetical protein YP_001670638.1 4943051 D 76869 CDS YP_001670639.1 167035408 5872223 complement(4943657..4943923) 1 NC_010322.1 KEGG: pen:PSEEN4347 hypothetical protein; hypothetical protein 4943923 5872223 PputGB1_4415 Pseudomonas putida GB-1 hypothetical protein YP_001670639.1 4943657 R 76869 CDS YP_001670640.1 167035409 5872224 complement(4943940..4944233) 1 NC_010322.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4348 hypothetical protein; antibiotic biosynthesis monooxygenase 4944233 5872224 PputGB1_4416 Pseudomonas putida GB-1 antibiotic biosynthesis monooxygenase YP_001670640.1 4943940 R 76869 CDS YP_001670641.1 167035410 5872225 4944436..4945356 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pen:PSEEN4349 transcriptional regulator, AraC family; AraC family transcriptional regulator 4945356 5872225 PputGB1_4417 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670641.1 4944436 D 76869 CDS YP_001670642.1 167035411 5872226 complement(4945429..4947066) 1 NC_010322.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pen:PSEEN4350 acetolactate synthase, large subunit; hypothetical protein 4947066 5872226 PputGB1_4418 Pseudomonas putida GB-1 hypothetical protein YP_001670642.1 4945429 R 76869 CDS YP_001670643.1 167035412 5872227 4947181..4948056 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4351 transcriptional regulator, LysR family; LysR family transcriptional regulator 4948056 5872227 PputGB1_4419 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670643.1 4947181 D 76869 CDS YP_001670644.1 167035413 5872228 complement(4948155..4948769) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; KEGG: pen:PSEEN4352 hypothetical protein; NAD-dependent epimerase/dehydratase 4948769 5872228 PputGB1_4420 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001670644.1 4948155 R 76869 CDS YP_001670645.1 167035414 5872229 complement(4948797..4949672) 1 NC_010322.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4353 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 4949672 5872229 PputGB1_4421 Pseudomonas putida GB-1 beta-lactamase domain-containing protein YP_001670645.1 4948797 R 76869 CDS YP_001670646.1 167035415 5872230 4949775..4950683 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4354 transcriptional regulator, LysR family; LysR family transcriptional regulator 4950683 5872230 PputGB1_4422 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670646.1 4949775 D 76869 CDS YP_001670647.1 167035416 5872231 4950756..4950896 1 NC_010322.1 KEGG: pen:PSEEN4355 hypothetical protein; hypothetical protein 4950896 5872231 PputGB1_4423 Pseudomonas putida GB-1 hypothetical protein YP_001670647.1 4950756 D 76869 CDS YP_001670648.1 167035417 5872232 complement(4950916..4951785) 1 NC_010322.1 KEGG: pen:PSEEN4356 carboxyphosphonoenolpyruvate phosphonomutase; carboxyphosphonoenolpyruvate phosphonomutase 4951785 5872232 PputGB1_4424 Pseudomonas putida GB-1 carboxyphosphonoenolpyruvate phosphonomutase YP_001670648.1 4950916 R 76869 CDS YP_001670649.1 167035418 5872233 4952168..4953619 1 NC_010322.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4357 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 4953619 5872233 PputGB1_4425 Pseudomonas putida GB-1 EmrB/QacA family drug resistance transporter YP_001670649.1 4952168 D 76869 CDS YP_001670650.1 167035419 5872234 complement(4953705..4954337) 1 NC_010322.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: pen:PSEEN4359 transcriptional regulator TtgR for multidrug efflux pump (TetR/AcrR family); TetR family transcriptional regulator 4954337 5872234 PputGB1_4426 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001670650.1 4953705 R 76869 CDS YP_001670651.1 167035420 5872235 4954595..4955749 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4360 multidrug/solvent efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 4955749 5872235 PputGB1_4427 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001670651.1 4954595 D 76869 CDS YP_001670652.1 167035421 5872236 4955753..4958905 1 NC_010322.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4361 multidrug/solvent RND transporter TtgB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4958905 5872236 PputGB1_4428 Pseudomonas putida GB-1 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001670652.1 4955753 D 76869 CDS YP_001670653.1 167035422 5872237 4958902..4960356 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4362 multidrug/solvent efflux outer membrane protein TtgC, RND family; RND efflux system outer membrane lipoprotein 4960356 5872237 PputGB1_4429 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001670653.1 4958902 D 76869 CDS YP_001670654.1 167035423 5872238 4960609..4961865 1 NC_010322.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin 4961865 5872238 PputGB1_4430 Pseudomonas putida GB-1 outer membrane porin YP_001670654.1 4960609 D 76869 CDS YP_001670655.1 167035424 5872239 4962014..4962937 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4364 transcriptional regulator, LysR family; LysR family transcriptional regulator 4962937 5872239 PputGB1_4431 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670655.1 4962014 D 76869 CDS YP_001670656.1 167035425 5872240 4963050..4963562 1 NC_010322.1 PFAM: protein of unknown function DUF962; KEGG: pen:PSEEN4366 hypothetical protein; hypothetical protein 4963562 5872240 PputGB1_4432 Pseudomonas putida GB-1 hypothetical protein YP_001670656.1 4963050 D 76869 CDS YP_001670657.1 167035426 5872241 complement(4963580..4963972) 1 NC_010322.1 KEGG: pen:PSEEN1169 gamma-carboxymuconolactone decarboxylase (CMD); TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 4963972 5872241 PputGB1_4433 Pseudomonas putida GB-1 4-carboxymuconolactone decarboxylase YP_001670657.1 4963580 R 76869 CDS YP_001670658.1 167035427 5872242 complement(4963983..4964774) 1 NC_010322.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase 4964774 5872242 PputGB1_4434 Pseudomonas putida GB-1 3-oxoadipate enol-lactonase YP_001670658.1 4963983 R 76869 CDS YP_001670659.1 167035428 5872243 complement(4964786..4966138) 1 NC_010322.1 Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 4966138 5872243 PputGB1_4435 Pseudomonas putida GB-1 3-carboxy-cis,cis-muconate cycloisomerase YP_001670659.1 4964786 R 76869 CDS YP_001670660.1 167035429 5872244 complement(4966148..4967437) 1 NC_010322.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1166 dicarboxylic acid transport protein; alpha-ketoglutarate permease (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 4967437 5872244 PputGB1_4436 Pseudomonas putida GB-1 major facilitator superfamily metabolite/H(+) symporter YP_001670660.1 4966148 R 76869 CDS YP_001670661.1 167035430 5872245 complement(4967627..4968829) 1 NC_010322.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 4968829 5872245 PputGB1_4437 Pseudomonas putida GB-1 beta-ketoadipyl CoA thiolase YP_001670661.1 4967627 R 76869 CDS YP_001670662.1 167035431 5872246 complement(4969102..4970448) 1 NC_010322.1 TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1162 4-hydroxybenzoate transporter (MFS superfamily); benzoate transport 4970448 5872246 PputGB1_4438 Pseudomonas putida GB-1 benzoate transport YP_001670662.1 4969102 R 76869 CDS YP_001670663.1 167035432 5872247 complement(4970770..4971645) 1 NC_010322.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN1160 regulatory protein for pca operon (activator); IclR family transcriptional regulator 4971645 5872247 PputGB1_4439 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001670663.1 4970770 R 76869 CDS YP_001670664.1 167035433 5872248 4972121..4972321 1 NC_010322.1 KEGG: pen:PSEEN1158 hypothetical protein; hypothetical protein 4972321 5872248 PputGB1_4440 Pseudomonas putida GB-1 hypothetical protein YP_001670664.1 4972121 D 76869 CDS YP_001670665.1 167035434 5872249 4972615..4974108 1 NC_010322.1 PFAM: phosphate transporter; KEGG: pen:PSEEN1157 low-affinity inorganic phosphate transporter; phosphate transporter 4974108 5872249 PputGB1_4441 Pseudomonas putida GB-1 phosphate transporter YP_001670665.1 4972615 D 76869 CDS YP_001670666.1 167035435 5872250 complement(4974204..4975679) 1 NC_010322.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: pen:PSEEN1155 hypothetical protein; hypothetical protein 4975679 5872250 PputGB1_4442 Pseudomonas putida GB-1 hypothetical protein YP_001670666.1 4974204 R 76869 CDS YP_001670667.1 167035436 5872251 4975848..4977722 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1154 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 4977722 5872251 PputGB1_4443 Pseudomonas putida GB-1 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001670667.1 4975848 D 76869 CDS YP_001670668.1 167035437 5872252 4977943..4979064 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pfo:Pfl_4432 glycosyl transferase, group 1; glycosyl transferase group 1 protein 4979064 5872252 PputGB1_4444 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001670668.1 4977943 D 76869 CDS YP_001670669.1 167035438 5872253 4979057..4979821 1 NC_010322.1 KEGG: pfo:Pfl_4433 hypothetical protein; hypothetical protein 4979821 5872253 PputGB1_4445 Pseudomonas putida GB-1 hypothetical protein YP_001670669.1 4979057 D 76869 CDS YP_001670670.1 167035439 5872254 4979818..4980810 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4434 hypothetical protein; hypothetical protein 4980810 5872254 PputGB1_4446 Pseudomonas putida GB-1 hypothetical protein YP_001670670.1 4979818 D 76869 CDS YP_001670671.1 167035440 5872255 complement(4981016..4981867) 1 NC_010322.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4981867 purU 5872255 purU Pseudomonas putida GB-1 formyltetrahydrofolate deformylase YP_001670671.1 4981016 R 76869 CDS YP_001670672.1 167035441 5872256 4982139..4982516 1 NC_010322.1 KEGG: pen:PSEEN1151 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit 4982516 5872256 PputGB1_4448 Pseudomonas putida GB-1 transcriptional regulator MvaT, P16 subunit YP_001670672.1 4982139 D 76869 CDS YP_001670673.1 167035442 5872257 complement(4982589..4984022) 1 NC_010322.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 4984022 sbcB 5872257 sbcB Pseudomonas putida GB-1 exonuclease I YP_001670673.1 4982589 R 76869 CDS YP_001670674.1 167035443 5872258 complement(4984080..4984439) 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN1149 hypothetical protein; type IV pilus assembly PilZ 4984439 5872258 PputGB1_4450 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001670674.1 4984080 R 76869 CDS YP_001670675.1 167035444 5872259 complement(4984563..4984949) 1 NC_010322.1 KEGG: pen:PSEEN1148 hypothetical protein; hypothetical protein 4984949 5872259 PputGB1_4451 Pseudomonas putida GB-1 hypothetical protein YP_001670675.1 4984563 R 76869 CDS YP_001670676.1 167035445 5872260 4985129..4986583 1 NC_010322.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4986583 5872260 PputGB1_4452 Pseudomonas putida GB-1 pyruvate kinase YP_001670676.1 4985129 D 76869 CDS YP_001670677.1 167035446 5872261 complement(4986625..4987545) 1 NC_010322.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN1146 ferredoxin reductase; hypothetical protein 4987545 5872261 PputGB1_4453 Pseudomonas putida GB-1 hypothetical protein YP_001670677.1 4986625 R 76869 CDS YP_001670678.1 167035447 5872262 4987795..4989318 1 NC_010322.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pen:PSEEN1145 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 4989318 5872262 PputGB1_4454 Pseudomonas putida GB-1 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001670678.1 4987795 D 76869 CDS YP_001670679.1 167035448 5872263 complement(4989422..4990294) 1 NC_010322.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3270 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4990294 5872263 PputGB1_4455 Pseudomonas putida GB-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001670679.1 4989422 R 76869 CDS YP_001670680.1 167035449 5872264 complement(4990291..4990881) 1 NC_010322.1 KEGG: pen:PSEEN1144 hypothetical protein; hypothetical protein 4990881 5872264 PputGB1_4456 Pseudomonas putida GB-1 hypothetical protein YP_001670680.1 4990291 R 76869 CDS YP_001670681.1 167035450 5872265 4990997..4991395 1 NC_010322.1 PFAM: protein of unknown function DUF1486; KEGG: pmy:Pmen_3272 protein of unknown function DUF1486; hypothetical protein 4991395 5872265 PputGB1_4457 Pseudomonas putida GB-1 hypothetical protein YP_001670681.1 4990997 D 76869 CDS YP_001670682.1 167035451 5872266 complement(4991465..4992043) 1 NC_010322.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN1143 protease C56; PfpI family intracellular peptidase 4992043 5872266 PputGB1_4458 Pseudomonas putida GB-1 PfpI family intracellular peptidase YP_001670682.1 4991465 R 76869 CDS YP_001670683.1 167035452 5872267 complement(4992095..4993252) 1 NC_010322.1 KEGG: pen:PSEEN1142 phospholipase; phospholipase 4993252 5872267 PputGB1_4459 Pseudomonas putida GB-1 phospholipase YP_001670683.1 4992095 R 76869 CDS YP_001670684.1 167035453 5872268 complement(4993254..4993835) 1 NC_010322.1 PFAM: YceI family protein; KEGG: pen:PSEEN1141 hypothetical protein; hypothetical protein 4993835 5872268 PputGB1_4460 Pseudomonas putida GB-1 hypothetical protein YP_001670684.1 4993254 R 76869 CDS YP_001670685.1 167035454 5872269 complement(4993880..4994176) 1 NC_010322.1 KEGG: pen:PSEEN1140 hypothetical protein; hypothetical protein 4994176 5872269 PputGB1_4461 Pseudomonas putida GB-1 hypothetical protein YP_001670685.1 4993880 R 76869 CDS YP_001670686.1 167035455 5872270 complement(4994173..4995261) 1 NC_010322.1 PFAM: beta-lactamase; KEGG: pen:PSEEN1139 beta-lactamase; beta-lactamase 4995261 5872270 PputGB1_4462 Pseudomonas putida GB-1 beta-lactamase YP_001670686.1 4994173 R 76869 CDS YP_001670687.1 167035456 5872271 complement(4995332..4996219) 1 NC_010322.1 KEGG: pen:PSEEN1138 hypothetical protein; hypothetical protein 4996219 5872271 PputGB1_4463 Pseudomonas putida GB-1 hypothetical protein YP_001670687.1 4995332 R 76869 CDS YP_001670688.1 167035457 5872272 4996379..4997134 1 NC_010322.1 KEGG: pen:PSEEN1137 hypothetical protein; hypothetical protein 4997134 5872272 PputGB1_4464 Pseudomonas putida GB-1 hypothetical protein YP_001670688.1 4996379 D 76869 CDS YP_001670689.1 167035458 5872273 4997134..4997922 1 NC_010322.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN1136 acyltransferase; phospholipid/glycerol acyltransferase 4997922 5872273 PputGB1_4465 Pseudomonas putida GB-1 phospholipid/glycerol acyltransferase YP_001670689.1 4997134 D 76869 CDS YP_001670690.1 167035459 5872274 complement(4997984..4998568) 1 NC_010322.1 PFAM: protein of unknown function DUF479; KEGG: pen:PSEEN1129 hypothetical protein; hypothetical protein 4998568 5872274 PputGB1_4466 Pseudomonas putida GB-1 hypothetical protein YP_001670690.1 4997984 R 76869 CDS YP_001670691.1 167035460 5872275 4998718..4999020 1 NC_010322.1 PFAM: regulatory protein ArsR; KEGG: pen:PSEEN1128 transcriptional regulator (ArsR family); ArsR family transcriptional regulator 4999020 5872275 PputGB1_4467 Pseudomonas putida GB-1 ArsR family transcriptional regulator YP_001670691.1 4998718 D 76869 CDS YP_001670692.1 167035461 5872276 4999038..5000087 1 NC_010322.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1127 xenobiotic reductase B; NADH:flavin oxidoreductase 5000087 5872276 PputGB1_4468 Pseudomonas putida GB-1 NADH:flavin oxidoreductase YP_001670692.1 4999038 D 76869 CDS YP_001670693.1 167035462 5872277 complement(5000155..5001024) 1 NC_010322.1 KEGG: pen:PSEEN1126 hypothetical protein; hypothetical protein 5001024 5872277 PputGB1_4469 Pseudomonas putida GB-1 hypothetical protein YP_001670693.1 5000155 R 76869 CDS YP_001670694.1 167035463 5872278 complement(5001112..5002107) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pen:PSEEN1125 nucleoside-diphosphate-sugar epimerases; NAD-dependent epimerase/dehydratase 5002107 5872278 PputGB1_4470 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001670694.1 5001112 R 76869 CDS YP_001670695.1 167035464 5872279 complement(5002157..5003047) 1 NC_010322.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 5003047 5872279 PputGB1_4471 Pseudomonas putida GB-1 chromosome replication initiation inhibitor protein YP_001670695.1 5002157 R 76869 CDS YP_001670696.1 167035465 5872280 5003148..5003747 1 NC_010322.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN1123 transporter, LysE family; lysine exporter protein LysE/YggA 5003747 5872280 PputGB1_4472 Pseudomonas putida GB-1 lysine exporter protein LysE/YggA YP_001670696.1 5003148 D 76869 CDS YP_001670697.1 167035466 5872281 5003986..5004582 1 NC_010322.1 PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1121 superoxide dismutase; superoxide dismutase 5004582 5872281 PputGB1_4473 Pseudomonas putida GB-1 superoxide dismutase YP_001670697.1 5003986 D 76869 CDS YP_001670698.1 167035467 5872282 5004854..5006905 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN1120 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain); diguanylate cyclase/phosphodiesterase 5006905 5872282 PputGB1_4474 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001670698.1 5004854 D 76869 CDS YP_001670699.1 167035468 5872283 5007064..5008401 1 NC_010322.1 KEGG: pen:PSEEN1119 hypothetical protein; hypothetical protein 5008401 5872283 PputGB1_4475 Pseudomonas putida GB-1 hypothetical protein YP_001670699.1 5007064 D 76869 CDS YP_001670700.1 167035469 5872284 5008610..5010037 1 NC_010322.1 PFAM: protein of unknown function DUF1111; KEGG: pen:PSEEN1117 hypothetical protein; hypothetical protein 5010037 5872284 PputGB1_4476 Pseudomonas putida GB-1 hypothetical protein YP_001670700.1 5008610 D 76869 CDS YP_001670701.1 167035470 5872285 5010058..5011122 1 NC_010322.1 KEGG: pen:PSEEN1116 lipoprotein; lipoprotein 5011122 5872285 PputGB1_4477 Pseudomonas putida GB-1 lipoprotein YP_001670701.1 5010058 D 76869 CDS YP_001670702.1 167035471 5872286 5011125..5012222 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1115 hypothetical protein; hypothetical protein 5012222 5872286 PputGB1_4478 Pseudomonas putida GB-1 hypothetical protein YP_001670702.1 5011125 D 76869 CDS YP_001670703.1 167035472 5872288 5013615..5016659 1 NC_010322.1 MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 5016659 5872288 PputGB1_4481 Pseudomonas putida GB-1 multidrug efflux protein YP_001670703.1 5013615 D 76869 CDS YP_001670704.1 167035473 5872289 complement(5016781..5017014) 1 NC_010322.1 KEGG: pen:PSEEN4454 hypothetical protein; hypothetical protein 5017014 5872289 PputGB1_4482 Pseudomonas putida GB-1 hypothetical protein YP_001670704.1 5016781 R 76869 CDS YP_001670705.1 167035474 5872290 complement(5017014..5017712) 1 NC_010322.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN4455 lipopolysaccharide kinase InaA; lipopolysaccharide kinase 5017712 5872290 PputGB1_4483 Pseudomonas putida GB-1 lipopolysaccharide kinase YP_001670705.1 5017014 R 76869 CDS YP_001670706.1 167035475 5872291 complement(5017719..5018399) 1 NC_010322.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4456 hypothetical protein; type 11 methyltransferase 5018399 5872291 PputGB1_4484 Pseudomonas putida GB-1 type 11 methyltransferase YP_001670706.1 5017719 R 76869 CDS YP_001670707.1 167035476 5872292 complement(5018507..5019817) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4457 sensor histidine kinase ColS; integral membrane sensor signal transduction histidine kinase 5019817 5872292 PputGB1_4485 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001670707.1 5018507 R 76869 CDS YP_001670708.1 167035477 5872293 complement(5019807..5020490) 1 NC_010322.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4458 response regulator ColR; two component transcriptional regulator 5020490 5872293 PputGB1_4486 Pseudomonas putida GB-1 two component transcriptional regulator YP_001670708.1 5019807 R 76869 CDS YP_001670709.1 167035478 5872294 5020674..5021402 1 NC_010322.1 KEGG: pen:PSEEN4459 hypothetical protein; hypothetical protein 5021402 5872294 PputGB1_4487 Pseudomonas putida GB-1 hypothetical protein YP_001670709.1 5020674 D 76869 CDS YP_001670710.1 167035479 5872295 complement(5021555..5023198) 1 NC_010322.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 5023198 groEL 5872295 groEL Pseudomonas putida GB-1 chaperonin GroEL YP_001670710.1 5021555 R 76869 CDS YP_001670711.1 167035480 5872296 complement(5023247..5023540) 1 NC_010322.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 5023540 groES 5872296 groES Pseudomonas putida GB-1 co-chaperonin GroES YP_001670711.1 5023247 R 76869 CDS YP_001670712.1 167035481 5872297 complement(5023783..5024244) 1 NC_010322.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 5024244 fxsA 5872297 fxsA Pseudomonas putida GB-1 FxsA protein YP_001670712.1 5023783 R 76869 CDS YP_001670713.1 167035482 5872298 complement(5024310..5025140) 1 NC_010322.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN4463 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 5025140 5872298 PputGB1_4491 Pseudomonas putida GB-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001670713.1 5024310 R 76869 CDS YP_001670714.1 167035483 5872299 complement(5025194..5026204) 1 NC_010322.1 KEGG: pen:PSEEN4464 hypothetical protein; hypothetical protein 5026204 5872299 PputGB1_4492 Pseudomonas putida GB-1 hypothetical protein YP_001670714.1 5025194 R 76869 CDS YP_001670715.1 167035484 5872300 5026357..5026710 1 NC_010322.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN4465 methylated DNA-protein cysteine methyltransferase; methylated-DNA-(protein)-cysteine S-methyltransferase 5026710 5872300 PputGB1_4493 Pseudomonas putida GB-1 methylated-DNA-(protein)-cysteine S-methyltransferase YP_001670715.1 5026357 D 76869 CDS YP_001670716.1 167035485 5872301 5026754..5028301 1 NC_010322.1 TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4466 muropeptide permease AmpG; AmpG-related permease 5028301 5872301 PputGB1_4494 Pseudomonas putida GB-1 AmpG-related permease YP_001670716.1 5026754 D 76869 CDS YP_001670717.1 167035486 5872302 complement(5028369..5029613) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4467 multidrug efflux MFS transporter; major facilitator superfamily transporter 5029613 5872302 PputGB1_4495 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670717.1 5028369 R 76869 CDS YP_001670718.1 167035487 5872303 complement(5029726..5030568) 1 NC_010322.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN4468 ion small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 5030568 5872303 PputGB1_4496 Pseudomonas putida GB-1 mechanosensitive ion channel protein MscS YP_001670718.1 5029726 R 76869 CDS YP_001670719.1 167035488 5872304 complement(5030683..5031168) 1 NC_010322.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 5031168 5872304 PputGB1_4497 Pseudomonas putida GB-1 putative nucleotide-binding protein YP_001670719.1 5030683 R 76869 CDS YP_001670720.1 167035489 5872305 5031269..5032186 1 NC_010322.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 5032186 5872305 PputGB1_4498 Pseudomonas putida GB-1 2-dehydropantoate 2-reductase YP_001670720.1 5031269 D 76869 CDS YP_001670721.1 167035490 5872306 5032224..5034248 1 NC_010322.1 KEGG: pen:PSEEN4472 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 5034248 5872306 PputGB1_4499 Pseudomonas putida GB-1 multi-sensor signal transduction histidine kinase YP_001670721.1 5032224 D 76869 CDS YP_001670722.1 167035491 5872307 5034250..5034816 1 NC_010322.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pen:PSEEN4473 Cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP--cobalamin adenosyltransferase 5034816 5872307 PputGB1_4500 Pseudomonas putida GB-1 ATP--cobalamin adenosyltransferase YP_001670722.1 5034250 D 76869 CDS YP_001670723.1 167035492 5872308 complement(5034947..5035891) 1 NC_010322.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pen:PSEEN4474 hydrolase MutT/NUDIX family/thiamine monophosphate synthase; hypothetical protein 5035891 5872308 PputGB1_4501 Pseudomonas putida GB-1 hypothetical protein YP_001670723.1 5034947 R 76869 CDS YP_001670724.1 167035493 5872309 complement(5035888..5036520) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4475 glutathione S-transferase; glutathione S-transferase domain-containing protein 5036520 5872309 PputGB1_4502 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001670724.1 5035888 R 76869 CDS YP_001670725.1 167035494 5872310 complement(5036651..5037868) 1 NC_010322.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 5037868 argJ 5872310 argJ Pseudomonas putida GB-1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001670725.1 5036651 R 76869 CDS YP_001670726.1 167035495 5872311 complement(5038063..5040798) 1 NC_010322.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 5040798 secA 5872311 secA Pseudomonas putida GB-1 preprotein translocase subunit SecA YP_001670726.1 5038063 R 76869 CDS YP_001670727.1 167035496 5872312 5041100..5041555 1 NC_010322.1 KEGG: pen:PSEEN4478 hypothetical protein; hypothetical protein 5041555 5872312 PputGB1_4505 Pseudomonas putida GB-1 hypothetical protein YP_001670727.1 5041100 D 76869 CDS YP_001670728.1 167035497 5872313 complement(5041609..5042520) 1 NC_010322.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 5042520 lpxC 5872313 lpxC Pseudomonas putida GB-1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001670728.1 5041609 R 76869 CDS YP_001670729.1 167035498 5872314 complement(5042633..5043829) 1 NC_010322.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 5043829 5872314 PputGB1_4507 Pseudomonas putida GB-1 cell division protein FtsZ YP_001670729.1 5042633 R 76869 CDS YP_001670730.1 167035499 5872315 complement(5043885..5045147) 1 NC_010322.1 PFAM: cell division protein FtsA; KEGG: pen:PSEEN4481 cell division protein FtsA; cell division protein FtsA 5045147 5872315 PputGB1_4508 Pseudomonas putida GB-1 cell division protein FtsA YP_001670730.1 5043885 R 76869 CDS YP_001670731.1 167035500 5872316 complement(5045162..5046031) 1 NC_010322.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pen:PSEEN4482 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 5046031 5872316 PputGB1_4509 Pseudomonas putida GB-1 polypeptide-transport-associated domain-containing protein YP_001670731.1 5045162 R 76869 CDS YP_001670732.1 167035501 5872317 complement(5046037..5046993) 1 NC_010322.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 5046993 ddl 5872317 ddl Pseudomonas putida GB-1 D-alanine--D-alanine ligase YP_001670732.1 5046037 R 76869 CDS YP_001670733.1 167035502 5872318 complement(5046990..5048438) 1 NC_010322.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 5048438 murC 5872318 murC Pseudomonas putida GB-1 UDP-N-acetylmuramate--L-alanine ligase YP_001670733.1 5046990 R 76869 CDS YP_001670734.1 167035503 5872319 complement(5048431..5049510) 1 NC_010322.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 5049510 murG 5872319 murG Pseudomonas putida GB-1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001670734.1 5048431 R 76869 CDS YP_001670735.1 167035504 5872320 complement(5049500..5050714) 1 NC_010322.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pen:PSEEN4486 cell division protein, stabililzes FtsZ ring; cell division protein FtsW 5050714 5872320 PputGB1_4513 Pseudomonas putida GB-1 cell division protein FtsW YP_001670735.1 5049500 R 76869 CDS YP_001670736.1 167035505 5872321 complement(5050711..5052063) 1 NC_010322.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 5052063 murD 5872321 murD Pseudomonas putida GB-1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001670736.1 5050711 R 76869 CDS YP_001670737.1 167035506 5872322 complement(5052064..5053146) 1 NC_010322.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 5053146 mraY 5872322 mraY Pseudomonas putida GB-1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001670737.1 5052064 R 76869 CDS YP_001670738.1 167035507 5872323 complement(5053146..5054513) 1 NC_010322.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN4489 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme); UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 5054513 5872323 PputGB1_4516 Pseudomonas putida GB-1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001670738.1 5053146 R 76869 CDS YP_001670739.1 167035508 5872324 complement(5054506..5055996) 1 NC_010322.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 5055996 murE 5872324 murE Pseudomonas putida GB-1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001670739.1 5054506 R 76869 CDS YP_001670740.1 167035509 5872325 complement(5055993..5057744) 1 NC_010322.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pen:PSEEN4491 penicillin-binding protein; peptidoglycan glycosyltransferase 5057744 5872325 PputGB1_4518 Pseudomonas putida GB-1 peptidoglycan glycosyltransferase YP_001670740.1 5055993 R 76869 CDS YP_001670741.1 167035510 5872326 complement(5057741..5058034) 1 NC_010322.1 PFAM: cell division protein FtsL; KEGG: pen:PSEEN4492 cell division protein FtsL; cell division protein FtsL 5058034 5872326 PputGB1_4519 Pseudomonas putida GB-1 cell division protein FtsL YP_001670741.1 5057741 R 76869 CDS YP_001670742.1 167035511 5872327 complement(5058031..5058978) 1 NC_010322.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pen:PSEEN4493 S-adenosylmethionine methyltransferase MraW; S-adenosyl-methyltransferase MraW 5058978 mraW 5872327 mraW Pseudomonas putida GB-1 S-adenosyl-methyltransferase MraW YP_001670742.1 5058031 R 76869 CDS YP_001670743.1 167035512 5872328 complement(5058975..5059430) 1 NC_010322.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 5059430 5872328 PputGB1_4521 Pseudomonas putida GB-1 cell division protein MraZ YP_001670743.1 5058975 R 76869 CDS YP_001670744.1 167035513 5872330 complement(5060180..5061055) 1 NC_010322.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN4495 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 5061055 5872330 PputGB1_4522 Pseudomonas putida GB-1 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001670744.1 5060180 R 76869 CDS YP_001670745.1 167035514 5872331 5061242..5063059 1 NC_010322.1 PFAM: LppC family lipoprotein; KEGG: pen:PSEEN4496 lipoprotein LppC; LppC family lipoprotein 5063059 5872331 PputGB1_4523 Pseudomonas putida GB-1 LppC family lipoprotein YP_001670745.1 5061242 D 76869 CDS YP_001670746.1 167035515 5872332 5063059..5063430 1 NC_010322.1 PFAM: protein of unknown function UPF0102; KEGG: pen:PSEEN4497 hypothetical protein; hypothetical protein 5063430 5872332 PputGB1_4524 Pseudomonas putida GB-1 hypothetical protein YP_001670746.1 5063059 D 76869 CDS YP_001670747.1 167035516 5872333 5063517..5064110 1 NC_010322.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 5064110 5872333 PputGB1_4525 Pseudomonas putida GB-1 phosphoheptose isomerase YP_001670747.1 5063517 D 76869 CDS YP_001670748.1 167035517 5872334 5064107..5064685 1 NC_010322.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN4499 lipoprotein; transport-associated 5064685 5872334 PputGB1_4526 Pseudomonas putida GB-1 transport-associated YP_001670748.1 5064107 D 76869 CDS YP_001670749.1 167035518 5872335 5064807..5065025 1 NC_010322.1 PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN4500 hypothetical protein; hypothetical protein 5065025 5872335 PputGB1_4527 Pseudomonas putida GB-1 hypothetical protein YP_001670749.1 5064807 D 76869 CDS YP_001670750.1 167035519 5872336 complement(5065076..5065507) 1 NC_010322.1 PFAM: Stringent starvation protein B; KEGG: pen:PSEEN4501 stringent starvation protein B; ClpXP protease specificity-enhancing factor 5065507 5872336 PputGB1_4528 Pseudomonas putida GB-1 ClpXP protease specificity-enhancing factor YP_001670750.1 5065076 R 76869 CDS YP_001670751.1 167035520 5872337 complement(5065518..5066141) 1 NC_010322.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4502 stringent starvation protein A; glutathione S-transferase domain-containing protein 5066141 5872337 PputGB1_4529 Pseudomonas putida GB-1 glutathione S-transferase domain-containing protein YP_001670751.1 5065518 R 76869 CDS YP_001670752.1 167035521 5872338 complement(5066259..5067038) 1 NC_010322.1 KEGG: pen:PSEEN4503 ubiquinol--cytochrome c reductase, cytochrome c1; ubiquinol--cytochrome c reductase, cytochrome c1 5067038 5872338 PputGB1_4530 Pseudomonas putida GB-1 ubiquinol--cytochrome c reductase, cytochrome c1 YP_001670752.1 5066259 R 76869 CDS YP_001670753.1 167035522 5872339 complement(5067038..5068252) 1 NC_010322.1 PFAM: Cytochrome b/b6 domain; KEGG: pen:PSEEN4504 ubiquinol--cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 5068252 5872339 PputGB1_4531 Pseudomonas putida GB-1 cytochrome b/b6 domain-containing protein YP_001670753.1 5067038 R 76869 CDS YP_001670754.1 167035523 5872340 complement(5068249..5068842) 1 NC_010322.1 KEGG: pen:PSEEN4505 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 5068842 5872340 PputGB1_4532 Pseudomonas putida GB-1 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001670754.1 5068249 R 76869 CDS YP_001670755.1 167035524 5872341 complement(5069105..5069497) 1 NC_010322.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 5069497 rpsI 5872341 rpsI Pseudomonas putida GB-1 30S ribosomal protein S9 YP_001670755.1 5069105 R 76869 CDS YP_001670756.1 167035525 5872342 complement(5069512..5069940) 1 NC_010322.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 5069940 rplM 5872342 rplM Pseudomonas putida GB-1 50S ribosomal protein L13 YP_001670756.1 5069512 R 76869 CDS YP_001670757.1 167035526 5872343 5070199..5071239 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN4508 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 5071239 5872343 PputGB1_4535 Pseudomonas putida GB-1 aldo/keto reductase YP_001670757.1 5070199 D 76869 CDS YP_001670758.1 167035527 5872344 5071335..5072339 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4509 transcriptional regulator, AraC family; AraC family transcriptional regulator 5072339 5872344 PputGB1_4536 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670758.1 5071335 D 76869 CDS YP_001670759.1 167035528 5872345 complement(5072371..5073465) 1 NC_010322.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN4510 ATPase; AFG1 family ATPase 5073465 5872345 PputGB1_4537 Pseudomonas putida GB-1 AFG1 family ATPase YP_001670759.1 5072371 R 76869 CDS YP_001670760.1 167035529 5872346 complement(5073550..5074899) 1 NC_010322.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 5074899 5872346 PputGB1_4538 Pseudomonas putida GB-1 tryptophanyl-tRNA synthetase YP_001670760.1 5073550 R 76869 CDS YP_001670761.1 167035530 5872347 complement(5074925..5075560) 1 NC_010322.1 KEGG: pen:PSEEN4512 hypothetical protein; hypothetical protein 5075560 5872347 PputGB1_4539 Pseudomonas putida GB-1 hypothetical protein YP_001670761.1 5074925 R 76869 CDS YP_001670762.1 167035531 5872348 5075696..5076133 1 NC_010322.1 PFAM: protein of unknown function DUF1043; KEGG: pen:PSEEN4513 hypothetical protein; hypothetical protein 5076133 5872348 PputGB1_4540 Pseudomonas putida GB-1 hypothetical protein YP_001670762.1 5075696 D 76869 CDS YP_001670763.1 167035532 5872349 complement(5076193..5077389) 1 NC_010322.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 5077389 5872349 PputGB1_4541 Pseudomonas putida GB-1 methionine gamma-lyase YP_001670763.1 5076193 R 76869 CDS YP_001670764.1 167035533 5872350 5077517..5077996 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4516 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5077996 5872350 PputGB1_4542 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001670764.1 5077517 D 76869 CDS YP_001670765.1 167035534 5872351 5078111..5078431 1 NC_010322.1 KEGG: pfo:Pfl_4761 S-type pyocin; S-type pyocin 5078431 5872351 PputGB1_4543 Pseudomonas putida GB-1 S-type pyocin YP_001670765.1 5078111 D 76869 CDS YP_001670766.1 167035535 5872352 5078428..5078685 1 NC_010322.1 PFAM: Colicin immunity protein/pyocin immunity protein; KEGG: cko:CKO_02443 hypothetical protein; colicin immunity protein/pyocin immunity protein 5078685 5872352 PputGB1_4544 Pseudomonas putida GB-1 colicin immunity protein/pyocin immunity protein YP_001670766.1 5078428 D 76869 CDS YP_001670767.1 167035536 5872353 complement(5078779..5080680) 1 NC_010322.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 5080680 5872353 PputGB1_4545 Pseudomonas putida GB-1 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_001670767.1 5078779 R 76869 CDS YP_001670768.1 167035537 5872354 complement(5080697..5081614) 1 NC_010322.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 5081614 5872354 PputGB1_4546 Pseudomonas putida GB-1 sulfate adenylyltransferase subunit 2 YP_001670768.1 5080697 R 76869 CDS YP_001670769.1 167035538 5872355 complement(5081813..5082571) 1 NC_010322.1 PFAM: protein of unknown function DUF34; KEGG: pen:PSEEN4520 hypothetical protein; hypothetical protein 5082571 5872355 PputGB1_4547 Pseudomonas putida GB-1 hypothetical protein YP_001670769.1 5081813 R 76869 CDS YP_001670770.1 167035539 5872356 5082740..5083900 1 NC_010322.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pen:PSEEN4521 HtrA-like serine protease AlgW; 2-alkenal reductase 5083900 5872356 PputGB1_4548 Pseudomonas putida GB-1 2-alkenal reductase YP_001670770.1 5082740 D 76869 CDS YP_001670771.1 167035540 5872357 complement(5083931..5084695) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4522 general amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5084695 5872357 PputGB1_4549 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670771.1 5083931 R 76869 CDS YP_001670772.1 167035541 5872358 complement(5084706..5085803) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4523 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5085803 5872358 PputGB1_4550 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670772.1 5084706 R 76869 CDS YP_001670773.1 167035542 5872359 complement(5085814..5086992) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4524 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5086992 5872359 PputGB1_4551 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001670773.1 5085814 R 76869 CDS YP_001670774.1 167035543 5872360 complement(5087060..5088088) 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN4525 general amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 5088088 5872360 PputGB1_4552 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001670774.1 5087060 R 76869 CDS YP_001670775.1 167035544 5872361 5088421..5089077 1 NC_010322.1 PFAM: phospholipase/Carboxylesterase; KEGG: pen:PSEEN4526 carboxylesterase; carboxylesterase 5089077 5872361 PputGB1_4553 Pseudomonas putida GB-1 carboxylesterase YP_001670775.1 5088421 D 76869 CDS YP_001670776.1 167035545 5872362 5089179..5090648 1 NC_010322.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 5090648 5872362 PputGB1_4554 Pseudomonas putida GB-1 ATP-dependent RNA helicase RhlB YP_001670776.1 5089179 D 76869 CDS YP_001670777.1 167035546 5872363 complement(5090812..5091258) 1 NC_010322.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pen:PSEEN4528 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis protein MoaE 5091258 5872363 PputGB1_4555 Pseudomonas putida GB-1 molybdopterin biosynthesis protein MoaE YP_001670777.1 5090812 R 76869 CDS YP_001670778.1 167035547 5872364 complement(5091261..5091506) 1 NC_010322.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: pen:PSEEN4529 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 5091506 5872364 PputGB1_4556 Pseudomonas putida GB-1 molybdopterin converting factor subunit 1 YP_001670778.1 5091261 R 76869 CDS YP_001670779.1 167035548 5872365 complement(5091506..5091976) 1 NC_010322.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 5091976 moaC 5872365 moaC Pseudomonas putida GB-1 molybdenum cofactor biosynthesis protein MoaC YP_001670779.1 5091506 R 76869 CDS YP_001670780.1 167035549 5872366 complement(5092083..5093477) 1 NC_010322.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pen:PSEEN4531 PhoH family protein; PhoH family protein 5093477 5872366 PputGB1_4558 Pseudomonas putida GB-1 PhoH family protein YP_001670780.1 5092083 R 76869 CDS YP_001670781.1 167035550 5872367 complement(5093759..5094886) 1 NC_010322.1 PFAM: polysaccharide deacetylase; KEGG: pen:PSEEN4533 polysaccharide deacetylase family protein; polysaccharide deacetylase 5094886 5872367 PputGB1_4559 Pseudomonas putida GB-1 polysaccharide deacetylase YP_001670781.1 5093759 R 76869 CDS YP_001670782.1 167035551 5872368 5095024..5095803 1 NC_010322.1 PFAM: protein of unknown function DUF328; KEGG: pen:PSEEN4534 hypothetical protein; hypothetical protein 5095803 5872368 PputGB1_4560 Pseudomonas putida GB-1 hypothetical protein YP_001670782.1 5095024 D 76869 CDS YP_001670783.1 167035552 5872369 5096608..5097924 1 NC_010322.1 KEGG: pen:PSEEN4535 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; GDP-mannose 6-dehydrogenase 5097924 5872369 PputGB1_4561 Pseudomonas putida GB-1 GDP-mannose 6-dehydrogenase YP_001670783.1 5096608 D 76869 CDS YP_001670784.1 167035553 5872370 5097991..5099481 1 NC_010322.1 KEGG: pen:PSEEN4536 glycosyl transferase Alg8; glycosyl transferase Alg8 5099481 5872370 PputGB1_4562 Pseudomonas putida GB-1 glycosyl transferase Alg8 YP_001670784.1 5097991 D 76869 CDS YP_001670785.1 167035554 5872371 5099519..5100685 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN4537 alginate biosynthesis protein Alg44; type IV pilus assembly PilZ 5100685 5872371 PputGB1_4563 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001670785.1 5099519 D 76869 CDS YP_001670786.1 167035555 5872372 5100698..5102248 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4538 alginate biosynthesis precursor AlgK; Sel1 domain-containing protein 5102248 5872372 PputGB1_4564 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001670786.1 5100698 D 76869 CDS YP_001670787.1 167035556 5872373 5102245..5103723 1 NC_010322.1 KEGG: pen:PSEEN4539 outer membrane protein AlgE; outer membrane protein AlgE 5103723 5872373 PputGB1_4565 Pseudomonas putida GB-1 outer membrane protein AlgE YP_001670787.1 5102245 D 76869 CDS YP_001670788.1 167035557 5872374 5103746..5105305 1 NC_010322.1 SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pen:PSEEN4540 alginate-C5-mannuronan-epimerase AlgG; carbohydrate-binding and sugar hydrolysis protein 5105305 5872374 PputGB1_4566 Pseudomonas putida GB-1 carbohydrate-binding and sugar hydrolysis protein YP_001670788.1 5103746 D 76869 CDS YP_001670789.1 167035558 5872375 5105319..5106758 1 NC_010322.1 KEGG: pen:PSEEN4541 alginate biosynthesis protein AlgX; alginate biosynthesis protein AlgX 5106758 5872375 PputGB1_4567 Pseudomonas putida GB-1 alginate biosynthesis protein AlgX YP_001670789.1 5105319 D 76869 CDS YP_001670790.1 167035559 5872376 5106767..5107870 1 NC_010322.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 5107870 algL 5872376 algL Pseudomonas putida GB-1 poly(beta-D-mannuronate) lyase YP_001670790.1 5106767 D 76869 CDS YP_001670791.1 167035560 5872377 5108000..5109457 1 NC_010322.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pen:PSEEN4543 alginate O-acetylation protein AlgI; membrane bound O-acyl transferase MBOAT family protein 5109457 5872377 PputGB1_4569 Pseudomonas putida GB-1 membrane bound O-acyl transferase MBOAT family protein YP_001670791.1 5108000 D 76869 CDS YP_001670792.1 167035561 5872378 5109468..5110625 1 NC_010322.1 KEGG: pen:PSEEN4544 alginate O-acetylation protein AlgJ precursor; alginate O-acetylation protein AlgJ 5110625 5872378 PputGB1_4570 Pseudomonas putida GB-1 alginate O-acetylation protein AlgJ YP_001670792.1 5109468 D 76869 CDS YP_001670793.1 167035562 5872379 5110646..5111293 1 NC_010322.1 KEGG: pen:PSEEN4545 alginate O-acetyltransferase AlgF; alginate O-acetyltransferase AlgF 5111293 5872379 PputGB1_4571 Pseudomonas putida GB-1 alginate O-acetyltransferase AlgF YP_001670793.1 5110646 D 76869 CDS YP_001670794.1 167035563 5872380 5111325..5112782 1 NC_010322.1 KEGG: pen:PSEEN4546 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5112782 5872380 PputGB1_4572 Pseudomonas putida GB-1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001670794.1 5111325 D 76869 CDS YP_001670795.1 167035564 5872381 5112907..5113371 1 NC_010322.1 KEGG: pen:PSEEN4547 hypothetical protein; hypothetical protein 5113371 5872381 PputGB1_4573 Pseudomonas putida GB-1 hypothetical protein YP_001670795.1 5112907 D 76869 CDS YP_001670796.1 167035565 5872382 5113387..5114199 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4551 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 5114199 5872382 PputGB1_4574 Pseudomonas putida GB-1 short chain dehydrogenase YP_001670796.1 5113387 D 76869 CDS YP_001670797.1 167035566 5872383 complement(5114322..5115773) 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4552 multidrug efflux MFS outer membrane protein; RND efflux system outer membrane lipoprotein 5115773 5872383 PputGB1_4575 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001670797.1 5114322 R 76869 CDS YP_001670798.1 167035567 5872384 complement(5115770..5116831) 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4553 multidrug efflux MFS membrane fusion protein; secretion protein HlyD family protein 5116831 5872384 PputGB1_4576 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001670798.1 5115770 R 76869 CDS YP_001670799.1 167035568 5872385 complement(5116860..5118401) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4554 multidrug efflux MFS transporter; major facilitator superfamily transporter 5118401 5872385 PputGB1_4577 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670799.1 5116860 R 76869 CDS YP_001670800.1 167035569 5872386 complement(5118518..5119423) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4555 transcriptional regulator, LysR family; LysR family transcriptional regulator 5119423 5872386 PputGB1_4578 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670800.1 5118518 R 76869 CDS YP_001670801.1 167035570 5872387 5119633..5120082 1 NC_010322.1 PFAM: UspA domain protein; KEGG: pen:PSEEN4556 universal stress protein family; UspA domain-containing protein 5120082 5872387 PputGB1_4579 Pseudomonas putida GB-1 UspA domain-containing protein YP_001670801.1 5119633 D 76869 CDS YP_001670802.1 167035571 5872388 complement(5120212..5121072) 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4557 HlyD family secretion protein; secretion protein HlyD family protein 5121072 5872388 PputGB1_4580 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001670802.1 5120212 R 76869 CDS YP_001670803.1 167035572 5872389 complement(5121083..5121283) 1 NC_010322.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN4558 hypothetical protein; hypothetical protein 5121283 5872389 PputGB1_4581 Pseudomonas putida GB-1 hypothetical protein YP_001670803.1 5121083 R 76869 CDS YP_001670804.1 167035573 5872390 complement(5121273..5123450) 1 NC_010322.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN4559 fusaric acid resistance protein; fusaric acid resistance protein region 5123450 5872390 PputGB1_4582 Pseudomonas putida GB-1 fusaric acid resistance protein region YP_001670804.1 5121273 R 76869 CDS YP_001670805.1 167035574 5872391 complement(5123447..5124976) 1 NC_010322.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4560 fusaric acid resistance protein; RND efflux system outer membrane lipoprotein 5124976 5872391 PputGB1_4583 Pseudomonas putida GB-1 RND efflux system outer membrane lipoprotein YP_001670805.1 5123447 R 76869 CDS YP_001670806.1 167035575 5872392 5125168..5126115 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4561 transcriptional regulator, LysR family; LysR family transcriptional regulator 5126115 5872392 PputGB1_4584 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670806.1 5125168 D 76869 CDS YP_001670807.1 167035576 5872393 5126194..5127168 1 NC_010322.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4562 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 5127168 5872393 PputGB1_4585 Pseudomonas putida GB-1 D-isomer specific 2-hydroxyacid dehydrogenase YP_001670807.1 5126194 D 76869 CDS YP_001670808.1 167035577 5872394 complement(5127281..5128183) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4563 hypothetical protein; hypothetical protein 5128183 5872394 PputGB1_4586 Pseudomonas putida GB-1 hypothetical protein YP_001670808.1 5127281 R 76869 CDS YP_001670809.1 167035578 5872395 5128369..5129244 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4564 transcriptional regulator, AraC family; AraC family transcriptional regulator 5129244 5872395 PputGB1_4587 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001670809.1 5128369 D 76869 CDS YP_001670810.1 167035579 5872396 complement(5129317..5131707) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4565 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5131707 5872396 PputGB1_4588 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001670810.1 5129317 R 76869 CDS YP_001670811.1 167035580 5872397 complement(5131837..5132817) 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN4566 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5132817 5872397 PputGB1_4589 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001670811.1 5131837 R 76869 CDS YP_001670812.1 167035581 5872398 complement(5132814..5133389) 1 NC_010322.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4567 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 5133389 5872398 PputGB1_4590 Pseudomonas putida GB-1 ECF subfamily RNA polymerase sigma-24 factor YP_001670812.1 5132814 R 76869 CDS YP_001670813.1 167035582 5872399 complement(5133394..5133720) 1 NC_010322.1 KEGG: pen:PSEEN4568 hypothetical protein; hypothetical protein 5133720 5872399 PputGB1_4591 Pseudomonas putida GB-1 hypothetical protein YP_001670813.1 5133394 R 76869 CDS YP_001670814.1 167035583 5872400 complement(5133720..5135297) 1 NC_010322.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4569 hypothetical protein; PepSY-associated TM helix domain-containing protein 5135297 5872400 PputGB1_4592 Pseudomonas putida GB-1 PepSY-associated TM helix domain-containing protein YP_001670814.1 5133720 R 76869 CDS YP_001670815.1 167035584 5872401 complement(5135294..5135599) 1 NC_010322.1 KEGG: pen:PSEEN4570 hypothetical protein; hypothetical protein 5135599 5872401 PputGB1_4593 Pseudomonas putida GB-1 hypothetical protein YP_001670815.1 5135294 R 76869 CDS YP_001670816.1 167035585 5872402 5135757..5136251 1 NC_010322.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this protein may be involved in ferric dicitrate uptake; RNA polymerase sigma factor 5136251 5872402 PputGB1_4594 Pseudomonas putida GB-1 RNA polymerase sigma factor YP_001670816.1 5135757 D 76869 CDS YP_001670817.1 167035586 5872403 5136248..5137174 1 NC_010322.1 PFAM: FecR protein; KEGG: pen:PSEEN4572 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5137174 5872403 PputGB1_4595 Pseudomonas putida GB-1 anti-FecI sigma factor FecR YP_001670817.1 5136248 D 76869 CDS YP_001670818.1 167035587 5872404 5137264..5139588 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4573 Fe(III) dicitrate transport protein FecA; TonB-dependent siderophore receptor 5139588 5872404 PputGB1_4596 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001670818.1 5137264 D 76869 CDS YP_001670819.1 167035588 5872405 5139766..5140113 1 NC_010322.1 KEGG: pen:PSEEN4601 hypothetical protein; hypothetical protein 5140113 5872405 PputGB1_4597 Pseudomonas putida GB-1 hypothetical protein YP_001670819.1 5139766 D 76869 CDS YP_001670820.1 167035589 5872406 5140235..5140525 1 NC_010322.1 KEGG: pen:PSEEN4602 hypothetical protein; hypothetical protein 5140525 5872406 PputGB1_4598 Pseudomonas putida GB-1 hypothetical protein YP_001670820.1 5140235 D 76869 CDS YP_001670821.1 167035590 5872407 complement(5140529..5140999) 1 NC_010322.1 PFAM: phosphate-starvation-inducible E; KEGG: pen:PSEEN4603 hypothetical protein; phosphate-starvation-inducible E 5140999 5872407 PputGB1_4599 Pseudomonas putida GB-1 phosphate-starvation-inducible E YP_001670821.1 5140529 R 76869 CDS YP_001670822.1 167035591 5872408 5141231..5141494 1 NC_010322.1 PFAM: YebG family protein; KEGG: pen:PSEEN4605 hypothetical protein; hypothetical protein 5141494 5872408 PputGB1_4600 Pseudomonas putida GB-1 hypothetical protein YP_001670822.1 5141231 D 76869 CDS YP_001670823.1 167035592 5872409 complement(5141556..5142575) 1 NC_010322.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: pen:PSEEN4606 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 5142575 5872409 PputGB1_4601 Pseudomonas putida GB-1 Glu/Leu/Phe/Val dehydrogenase YP_001670823.1 5141556 R 76869 CDS YP_001670824.1 167035593 5872410 5142700..5143506 1 NC_010322.1 KEGG: pen:PSEEN4608 hypothetical protein; hypothetical protein 5143506 5872410 PputGB1_4602 Pseudomonas putida GB-1 hypothetical protein YP_001670824.1 5142700 D 76869 CDS YP_001670825.1 167035594 5872411 complement(5143500..5144132) 1 NC_010322.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4610 maleylacetoacetate isomerase; maleylacetoacetate isomerase 5144132 5872411 PputGB1_4603 Pseudomonas putida GB-1 maleylacetoacetate isomerase YP_001670825.1 5143500 R 76869 CDS YP_001670826.1 167035595 5872412 complement(5144145..5145437) 1 NC_010322.1 KEGG: pen:PSEEN4611 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 5145437 5872412 PputGB1_4604 Pseudomonas putida GB-1 fumarylacetoacetase YP_001670826.1 5144145 R 76869 CDS YP_001670827.1 167035596 5872413 complement(5145441..5146742) 1 NC_010322.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 5146742 5872413 PputGB1_4605 Pseudomonas putida GB-1 homogentisate 1,2-dioxygenase YP_001670827.1 5145441 R 76869 CDS YP_001670828.1 167035597 5872414 5146911..5147699 1 NC_010322.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN4613 transcriptional regulator, IclR family; IclR family transcriptional regulator 5147699 5872414 PputGB1_4606 Pseudomonas putida GB-1 IclR family transcriptional regulator YP_001670828.1 5146911 D 76869 CDS YP_001670829.1 167035598 5872415 complement(5147927..5148841) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4615 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5148841 5872415 PputGB1_4607 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001670829.1 5147927 R 76869 CDS YP_001670830.1 167035599 5872416 complement(5148956..5149861) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4616 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 5149861 5872416 PputGB1_4608 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670830.1 5148956 R 76869 CDS YP_001670831.1 167035600 5872417 complement(5150038..5150724) 1 NC_010322.1 PFAM: LrgB family protein; KEGG: pen:PSEEN4617 effector of murein hydrolase LgrB; LrgB family protein 5150724 5872417 PputGB1_4609 Pseudomonas putida GB-1 LrgB family protein YP_001670831.1 5150038 R 76869 CDS YP_001670832.1 167035601 5872418 complement(5150714..5151100) 1 NC_010322.1 PFAM: LrgA family protein; KEGG: pen:PSEEN4618 murein hydrolase transporter LgrA; LrgA family protein 5151100 5872418 PputGB1_4610 Pseudomonas putida GB-1 LrgA family protein YP_001670832.1 5150714 R 76869 CDS YP_001670833.1 167035602 5872419 5151197..5152078 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4619 transcriptional regulator, LysR family; LysR family transcriptional regulator 5152078 5872419 PputGB1_4611 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670833.1 5151197 D 76869 CDS YP_001670834.1 167035603 5872420 complement(5152113..5152568) 1 NC_010322.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 5152568 5872420 PputGB1_4612 Pseudomonas putida GB-1 flavodoxin YP_001670834.1 5152113 R 76869 CDS YP_001670835.1 167035604 5872421 5152695..5153123 1 NC_010322.1 KEGG: pfl:PFL_0954 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 5153123 5872421 PputGB1_4613 Pseudomonas putida GB-1 putative PAS/PAC sensor protein YP_001670835.1 5152695 D 76869 CDS YP_001670836.1 167035605 5872422 5153183..5153800 1 NC_010322.1 KEGG: pen:PSEEN4621 hypothetical protein; hypothetical protein 5153800 5872422 PputGB1_4614 Pseudomonas putida GB-1 hypothetical protein YP_001670836.1 5153183 D 76869 CDS YP_001670837.1 167035606 5872423 complement(5153785..5154720) 1 NC_010322.1 PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator 5154720 5872423 PputGB1_4615 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001670837.1 5153785 R 76869 CDS YP_001670838.1 167035607 5872424 5154939..5155499 1 NC_010322.1 KEGG: pen:PSEEN4622 hypothetical protein; hypothetical protein 5155499 5872424 PputGB1_4616 Pseudomonas putida GB-1 hypothetical protein YP_001670838.1 5154939 D 76869 CDS YP_001670839.1 167035608 5872425 5155533..5156270 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4623 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 5156270 5872425 PputGB1_4617 Pseudomonas putida GB-1 short chain dehydrogenase YP_001670839.1 5155533 D 76869 CDS YP_001670840.1 167035609 5872426 5156280..5156576 1 NC_010322.1 PFAM: protein of unknown function DUF1244; KEGG: pen:PSEEN4624 hypothetical protein; hypothetical protein 5156576 5872426 PputGB1_4618 Pseudomonas putida GB-1 hypothetical protein YP_001670840.1 5156280 D 76869 CDS YP_001670841.1 167035610 5872427 5156569..5156910 1 NC_010322.1 PFAM: HopJ type III effector protein; KEGG: pen:PSEEN4625 type III effector HopPmaJ; HopJ type III effector protein 5156910 5872427 PputGB1_4619 Pseudomonas putida GB-1 HopJ type III effector protein YP_001670841.1 5156569 D 76869 CDS YP_001670842.1 167035611 5872428 complement(5157010..5157912) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4626 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 5157912 5872428 PputGB1_4620 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001670842.1 5157010 R 76869 CDS YP_001670843.1 167035612 5872429 complement(5158018..5159229) 1 NC_010322.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 5159229 5872429 PputGB1_4621 Pseudomonas putida GB-1 trans-2-enoyl-CoA reductase YP_001670843.1 5158018 R 76869 CDS YP_001670844.1 167035613 5872430 complement(5159377..5160231) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4628 transcriptional regulator, LysR family; LysR family transcriptional regulator 5160231 5872430 PputGB1_4622 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670844.1 5159377 R 76869 CDS YP_001670845.1 167035614 5872431 5160367..5161407 1 NC_010322.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN4629 peptidylarginine deiminase, PPADH family; agmatine deiminase 5161407 5872431 PputGB1_4623 Pseudomonas putida GB-1 agmatine deiminase YP_001670845.1 5160367 D 76869 CDS YP_001670846.1 167035615 5872432 5161404..5162300 1 NC_010322.1 TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN4630 carbon-nitrogen hydrolase; N-carbamoylputrescine amidase 5162300 5872432 PputGB1_4624 Pseudomonas putida GB-1 N-carbamoylputrescine amidase YP_001670846.1 5161404 D 76869 CDS YP_001670847.1 167035616 5872433 5162303..5163388 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4631 periplasmic polyamine-binding protein; extracellular solute-binding protein 5163388 5872433 PputGB1_4625 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001670847.1 5162303 D 76869 CDS YP_001670848.1 167035617 5872434 5163392..5164501 1 NC_010322.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN4632 peptidylarginine deiminase, PPADH family; agmatine deiminase 5164501 5872434 PputGB1_4626 Pseudomonas putida GB-1 agmatine deiminase YP_001670848.1 5163392 D 76869 CDS YP_001670849.1 167035618 5872435 complement(5164523..5165041) 1 NC_010322.1 PFAM: cytochrome B561; KEGG: pen:PSEEN4633 cytochrome b561 family protein; cytochrome B561 5165041 5872435 PputGB1_4627 Pseudomonas putida GB-1 cytochrome B561 YP_001670849.1 5164523 R 76869 CDS YP_001670850.1 167035619 5872436 complement(5165053..5165319) 1 NC_010322.1 KEGG: pen:PSEEN4634 hypothetical protein; hypothetical protein 5165319 5872436 PputGB1_4628 Pseudomonas putida GB-1 hypothetical protein YP_001670850.1 5165053 R 76869 CDS YP_001670851.1 167035620 5872437 5165495..5166673 1 NC_010322.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5166673 5872437 PputGB1_4629 Pseudomonas putida GB-1 acetyl-CoA acetyltransferase YP_001670851.1 5165495 D 76869 CDS YP_001670852.1 167035621 5872438 complement(5166758..5167477) 1 NC_010322.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4636 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5167477 5872438 PputGB1_4630 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001670852.1 5166758 R 76869 CDS YP_001670853.1 167035622 5872439 complement(5167545..5168345) 1 NC_010322.1 PFAM: Cobalamin-independent synthase MetE domain protein; KEGG: pen:PSEEN4639 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 5168345 5872439 PputGB1_4631 Pseudomonas putida GB-1 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001670853.1 5167545 R 76869 CDS YP_001670854.1 167035623 5872440 5168554..5170041 1 NC_010322.1 PFAM: methylenetetrahydrofolate reductase; KEGG: pen:PSEEN4641 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 5170041 5872440 PputGB1_4632 Pseudomonas putida GB-1 methylenetetrahydrofolate reductase YP_001670854.1 5168554 D 76869 CDS YP_001670855.1 167035624 5872441 complement(5170001..5170978) 1 NC_010322.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN0805 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 5170978 5872441 PputGB1_4633 Pseudomonas putida GB-1 cobalamin synthesis protein P47K YP_001670855.1 5170001 R 76869 CDS YP_001670856.1 167035625 5872442 complement(5171057..5171254) 1 NC_010322.1 PFAM: protein of unknown function DUF466; KEGG: pen:PSEEN0804 hypothetical protein; hypothetical protein 5171254 5872442 PputGB1_4634 Pseudomonas putida GB-1 hypothetical protein YP_001670856.1 5171057 R 76869 CDS YP_001670857.1 167035626 5872443 complement(5171272..5173338) 1 NC_010322.1 PFAM: carbon starvation protein CstA; KEGG: pen:PSEEN0803 carbon starvation protein CstA; carbon starvation protein CstA 5173338 5872443 PputGB1_4635 Pseudomonas putida GB-1 carbon starvation protein CstA YP_001670857.1 5171272 R 76869 CDS YP_001670858.1 167035627 5872444 5173516..5173881 1 NC_010322.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN0802 hypothetical protein; type IV pilus assembly PilZ 5173881 5872444 PputGB1_4636 Pseudomonas putida GB-1 type IV pilus assembly PilZ YP_001670858.1 5173516 D 76869 CDS YP_001670859.1 167035628 5872445 5174145..5175662 1 NC_010322.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0801 xanthine/uracil permease; xanthine permease 5175662 5872445 PputGB1_4637 Pseudomonas putida GB-1 xanthine permease YP_001670859.1 5174145 D 76869 CDS YP_001670860.1 167035629 5872446 complement(5175770..5177140) 1 NC_010322.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 5177140 5872446 PputGB1_4638 Pseudomonas putida GB-1 DNA repair protein RadA YP_001670860.1 5175770 R 76869 CDS YP_001670861.1 167035630 5872447 5177317..5177736 1 NC_010322.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5177736 mscL 5872447 mscL Pseudomonas putida GB-1 large-conductance mechanosensitive channel YP_001670861.1 5177317 D 76869 CDS YP_001670862.1 167035631 5872448 complement(5177770..5178606) 1 NC_010322.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: pen:PSEEN4772 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 5178606 5872448 PputGB1_4640 Pseudomonas putida GB-1 oxidoreductase FAD/NAD(P)-binding subunit YP_001670862.1 5177770 R 76869 CDS YP_001670863.1 167035632 5872449 5178757..5179464 1 NC_010322.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: pen:PSEEN4773 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 5179464 5872449 PputGB1_4641 Pseudomonas putida GB-1 LuxR family transcriptional regulator YP_001670863.1 5178757 D 76869 CDS YP_001670864.1 167035633 5872450 5179561..5180685 1 NC_010322.1 PFAM: methyltransferase small; KEGG: pen:PSEEN4774 nucleotide methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 5180685 5872450 PputGB1_4642 Pseudomonas putida GB-1 rRNA (guanine-N(2)-)-methyltransferase YP_001670864.1 5179561 D 76869 CDS YP_001670865.1 167035634 5872451 complement(5180803..5180958) 1 NC_010322.1 KEGG: pen:PSEEN4775 hypothetical protein; hypothetical protein 5180958 5872451 PputGB1_4643 Pseudomonas putida GB-1 hypothetical protein YP_001670865.1 5180803 R 76869 CDS YP_001670866.1 167035635 5872452 complement(5180968..5181975) 1 NC_010322.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: pen:PSEEN4776 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II 5181975 5872452 PputGB1_4644 Pseudomonas putida GB-1 cytochrome d ubiquinol oxidase subunit II YP_001670866.1 5180968 R 76869 CDS YP_001670867.1 167035636 5872453 complement(5181979..5183415) 1 NC_010322.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I 5183415 5872453 PputGB1_4645 Pseudomonas putida GB-1 cytochrome bd ubiquinol oxidase subunit I YP_001670867.1 5181979 R 76869 CDS YP_001670868.1 167035637 5872454 5183760..5184989 1 NC_010322.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4778 transporter, MFS family; major facilitator superfamily transporter 5184989 5872454 PputGB1_4646 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670868.1 5183760 D 76869 CDS YP_001670869.1 167035638 5872455 complement(5185015..5185494) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pst:PSPTO_3654 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5185494 5872455 PputGB1_4647 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001670869.1 5185015 R 76869 CDS YP_001670870.1 167035639 5872456 5185694..5186989 1 NC_010322.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4779 transporter; xanthine/uracil/vitamin C permease 5186989 5872456 PputGB1_4648 Pseudomonas putida GB-1 xanthine/uracil/vitamin C permease YP_001670870.1 5185694 D 76869 CDS YP_001670871.1 167035640 5872457 5186986..5188071 1 NC_010322.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5188071 5872457 PputGB1_4649 Pseudomonas putida GB-1 tRNA (uracil-5-)-methyltransferase YP_001670871.1 5186986 D 76869 CDS YP_001670872.1 167035641 5872458 complement(5188115..5188720) 1 NC_010322.1 KEGG: pen:PSEEN4783 protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD); TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 5188720 5872458 PputGB1_4650 Pseudomonas putida GB-1 protocatechuate 3,4-dioxygenase subunit alpha YP_001670872.1 5188115 R 76869 CDS YP_001670873.1 167035642 5872459 complement(5188731..5189450) 1 NC_010322.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pen:PSEEN4784 protocatechuate 3,4-dioxygenase beta chain (3,4-PCD); protocatechuate 3,4-dioxygenase subunit beta 5189450 5872459 PputGB1_4651 Pseudomonas putida GB-1 protocatechuate 3,4-dioxygenase subunit beta YP_001670873.1 5188731 R 76869 CDS YP_001670874.1 167035643 5872460 5189651..5190544 1 NC_010322.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: pen:PSEEN4786 zinc-dependent peptidase (neutral); hypothetical protein 5190544 5872460 PputGB1_4652 Pseudomonas putida GB-1 hypothetical protein YP_001670874.1 5189651 D 76869 CDS YP_001670875.1 167035644 5872461 5190718..5192637 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0717 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5192637 5872461 PputGB1_4653 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001670875.1 5190718 D 76869 CDS YP_001670876.1 167035645 5872462 complement(5192768..5194435) 1 NC_010322.1 KEGG: pen:PSEEN0716 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 5194435 5872462 PputGB1_4654 Pseudomonas putida GB-1 gamma-glutamyltransferase YP_001670876.1 5192768 R 76869 CDS YP_001670877.1 167035646 5872463 complement(5194553..5195494) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 5195494 5872463 PputGB1_4655 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670877.1 5194553 R 76869 CDS YP_001670878.1 167035647 5872464 complement(5195537..5196127) 1 NC_010322.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN0714 probable nitroreductase or quinone reductase; NAD(P)H dehydrogenase (quinone) 5196127 5872464 PputGB1_4656 Pseudomonas putida GB-1 NAD(P)H dehydrogenase (quinone) YP_001670878.1 5195537 R 76869 CDS YP_001670879.1 167035648 5872465 5196290..5196604 1 NC_010322.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN0713 hypothetical protein; antibiotic biosynthesis monooxygenase 5196604 5872465 PputGB1_4657 Pseudomonas putida GB-1 antibiotic biosynthesis monooxygenase YP_001670879.1 5196290 D 76869 CDS YP_001670880.1 167035649 5872466 complement(5196594..5197358) 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pfl:PFL_0767 hypothetical protein; hypothetical protein 5197358 5872466 PputGB1_4658 Pseudomonas putida GB-1 hypothetical protein YP_001670880.1 5196594 R 76869 CDS YP_001670881.1 167035650 5872467 5197437..5198318 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 5198318 5872467 PputGB1_4659 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670881.1 5197437 D 76869 CDS YP_001670882.1 167035651 5872468 5198606..5198950 1 NC_010322.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN0704 hypothetical protein; hypothetical protein 5198950 5872468 PputGB1_4660 Pseudomonas putida GB-1 hypothetical protein YP_001670882.1 5198606 D 76869 CDS YP_001670883.1 167035652 5872469 5199246..5199734 1 NC_010322.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 5199734 5872469 PputGB1_4661 Pseudomonas putida GB-1 Hcp1 family type VI secretion system effector YP_001670883.1 5199246 D 76869 CDS YP_001670884.1 167035653 5872470 5199745..5200722 1 NC_010322.1 KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein 5200722 5872470 PputGB1_4662 Pseudomonas putida GB-1 hypothetical protein YP_001670884.1 5199745 D 76869 CDS YP_001670885.1 167035654 5872471 5200779..5201078 1 NC_010322.1 hypothetical protein 5201078 5872471 PputGB1_4663 Pseudomonas putida GB-1 hypothetical protein YP_001670885.1 5200779 D 76869 CDS YP_001670886.1 167035655 5872472 complement(5201216..5202103) 1 NC_010322.1 KEGG: pen:PSEEN0700 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 5202103 5872472 PputGB1_4664 Pseudomonas putida GB-1 3-hydroxyisobutyrate dehydrogenase YP_001670886.1 5201216 R 76869 CDS YP_001670887.1 167035656 5872473 complement(5202113..5203639) 1 NC_010322.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0699 methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein; methylmalonate-semialdehyde dehydrogenase 5203639 5872473 PputGB1_4665 Pseudomonas putida GB-1 methylmalonate-semialdehyde dehydrogenase YP_001670887.1 5202113 R 76869 CDS YP_001670888.1 167035657 5872474 5203772..5204722 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0698 transcriptional regulator, LysR family; LysR family transcriptional regulator 5204722 5872474 PputGB1_4666 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670888.1 5203772 D 76869 CDS YP_001670889.1 167035658 5872475 complement(5204754..5205245) 1 NC_010322.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0697 outer membrane lipoprotein (OmpA domain); OmpA/MotB domain-containing protein 5205245 5872475 PputGB1_4667 Pseudomonas putida GB-1 OmpA/MotB domain-containing protein YP_001670889.1 5204754 R 76869 CDS YP_001670890.1 167035659 5872476 complement(5205250..5206521) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0696 hypothetical protein; diguanylate cyclase 5206521 5872476 PputGB1_4668 Pseudomonas putida GB-1 diguanylate cyclase YP_001670890.1 5205250 R 76869 CDS YP_001670891.1 167035660 5872477 complement(5206518..5207084) 1 NC_010322.1 KEGG: pen:PSEEN0695 hypothetical protein; hypothetical protein 5207084 5872477 PputGB1_4669 Pseudomonas putida GB-1 hypothetical protein YP_001670891.1 5206518 R 76869 CDS YP_001670892.1 167035661 5872478 complement(5207165..5209240) 1 NC_010322.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pen:PSEEN0693 exonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 5209240 5872478 PputGB1_4670 Pseudomonas putida GB-1 exodeoxyribonuclease V subunit alpha YP_001670892.1 5207165 R 76869 CDS YP_001670893.1 167035662 5872479 complement(5209237..5212911) 1 NC_010322.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN0692 exonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 5212911 5872479 PputGB1_4671 Pseudomonas putida GB-1 exodeoxyribonuclease V subunit beta YP_001670893.1 5209237 R 76869 CDS YP_001670894.1 167035663 5872480 complement(5212908..5216387) 1 NC_010322.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: pen:PSEEN0691 exonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 5216387 5872480 PputGB1_4672 Pseudomonas putida GB-1 exodeoxyribonuclease V subunit gamma YP_001670894.1 5212908 R 76869 CDS YP_001670895.1 167035664 5872484 complement(5221996..5222607) 1 NC_010322.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 5222607 5872484 PputGB1_4673 Pseudomonas putida GB-1 putative sulfite oxidase subunit YedZ YP_001670895.1 5221996 R 76869 CDS YP_001670896.1 167035665 5872485 complement(5222607..5223620) 1 NC_010322.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 5223620 5872485 PputGB1_4674 Pseudomonas putida GB-1 putative sulfite oxidase subunit YedY YP_001670896.1 5222607 R 76869 CDS YP_001670897.1 167035666 5872486 complement(5223700..5224551) 1 NC_010322.1 KEGG: pen:PSEEN4708 phosphatidylserine synthase PssA; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 5224551 5872486 PputGB1_4675 Pseudomonas putida GB-1 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001670897.1 5223700 R 76869 CDS YP_001670898.1 167035667 5872487 complement(5224702..5225718) 1 NC_010322.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 5225718 5872487 PputGB1_4676 Pseudomonas putida GB-1 ketol-acid reductoisomerase YP_001670898.1 5224702 R 76869 CDS YP_001670899.1 167035668 5872488 complement(5225774..5226265) 1 NC_010322.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 5226265 ilvH 5872488 ilvH Pseudomonas putida GB-1 acetolactate synthase 3 regulatory subunit YP_001670899.1 5225774 R 76869 CDS YP_001670900.1 167035669 5872489 complement(5226267..5227991) 1 NC_010322.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 5227991 5872489 PputGB1_4678 Pseudomonas putida GB-1 acetolactate synthase 3 catalytic subunit YP_001670900.1 5226267 R 76869 CDS YP_001670901.1 167035670 5872490 complement(5228402..5228734) 1 NC_010322.1 PFAM: protein of unknown function DUF446; KEGG: pen:PSEEN4713 hypothetical protein; hypothetical protein 5228734 5872490 PputGB1_4679 Pseudomonas putida GB-1 hypothetical protein YP_001670901.1 5228402 R 76869 CDS YP_001670902.1 167035671 5872491 complement(5228734..5229537) 1 NC_010322.1 KEGG: pen:PSEEN4714 hypothetical protein; hypothetical protein 5229537 5872491 PputGB1_4680 Pseudomonas putida GB-1 hypothetical protein YP_001670902.1 5228734 R 76869 CDS YP_001670903.1 167035672 5872492 complement(5229553..5231874) 1 NC_010322.1 KEGG: pen:PSEEN4715 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 5231874 5872492 PputGB1_4681 Pseudomonas putida GB-1 penicillin-binding protein 1B YP_001670903.1 5229553 R 76869 CDS YP_001670904.1 167035673 5872493 5231990..5233552 1 NC_010322.1 KEGG: pen:PSEEN4716 hypothetical protein; hypothetical protein 5233552 5872493 PputGB1_4682 Pseudomonas putida GB-1 hypothetical protein YP_001670904.1 5231990 D 76869 CDS YP_001670905.1 167035674 5872494 5233729..5234007 1 NC_010322.1 PFAM: TfoX domain protein; KEGG: pen:PSEEN4718 hypothetical protein; TfoX domain-containing protein 5234007 5872494 PputGB1_4683 Pseudomonas putida GB-1 TfoX domain-containing protein YP_001670905.1 5233729 D 76869 CDS YP_001670906.1 167035675 5872495 complement(5234189..5235073) 1 NC_010322.1 PFAM: protein of unknown function DUF399; KEGG: pen:PSEEN4719 hypothetical protein; hypothetical protein 5235073 5872495 PputGB1_4684 Pseudomonas putida GB-1 hypothetical protein YP_001670906.1 5234189 R 76869 CDS YP_001670907.1 167035676 5872496 complement(5235086..5235853) 1 NC_010322.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 5235853 hmuV 5872496 hmuV Pseudomonas putida GB-1 hemin importer ATP-binding subunit YP_001670907.1 5235086 R 76869 CDS YP_001670908.1 167035677 5872497 complement(5235853..5236890) 1 NC_010322.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: pen:PSEEN4721 ABC transporter, permease component; transport system permease 5236890 5872497 PputGB1_4686 Pseudomonas putida GB-1 transport system permease YP_001670908.1 5235853 R 76869 CDS YP_001670909.1 167035678 5872498 complement(5236887..5237771) 1 NC_010322.1 PFAM: periplasmic binding protein; KEGG: pen:PSEEN4722 ABC transporter, periplasmic binding protein; periplasmic binding protein 5237771 5872498 PputGB1_4687 Pseudomonas putida GB-1 periplasmic binding protein YP_001670909.1 5236887 R 76869 CDS YP_001670910.1 167035679 5872499 5237920..5238237 1 NC_010322.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN4723 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 5238237 5872499 PputGB1_4688 Pseudomonas putida GB-1 Rieske (2Fe-2S) domain-containing protein YP_001670910.1 5237920 D 76869 CDS YP_001670911.1 167035680 5872500 complement(5238227..5238940) 1 NC_010322.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 5238940 5872500 PputGB1_4689 Pseudomonas putida GB-1 sugar fermentation stimulation protein A YP_001670911.1 5238227 R 76869 CDS YP_001670912.1 167035681 5872501 complement(5238940..5240112) 1 NC_010322.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN4725 aminotransferase, class I; hypothetical protein 5240112 5872501 PputGB1_4690 Pseudomonas putida GB-1 hypothetical protein YP_001670912.1 5238940 R 76869 CDS YP_001670913.1 167035682 5872502 5240323..5240766 1 NC_010322.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN4726 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 5240766 5872502 PputGB1_4691 Pseudomonas putida GB-1 TraR/DksA family transcriptional regulator YP_001670913.1 5240323 D 76869 CDS YP_001670914.1 167035683 5872503 5240830..5241717 1 NC_010322.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5241717 5872503 PputGB1_4692 Pseudomonas putida GB-1 glutamyl-Q tRNA(Asp) synthetase YP_001670914.1 5240830 D 76869 CDS YP_001670915.1 167035684 5872504 5241881..5242057 1 NC_010322.1 KEGG: pen:PSEEN4728 hypothetical protein; hypothetical protein 5242057 5872504 PputGB1_4693 Pseudomonas putida GB-1 hypothetical protein YP_001670915.1 5241881 D 76869 CDS YP_001670916.1 167035685 5872505 5242041..5245016 1 NC_010322.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN4729 sensory box histidine kinase CrbA; multi-sensor signal transduction histidine kinase 5245016 5872505 PputGB1_4694 Pseudomonas putida GB-1 multi-sensor signal transduction histidine kinase YP_001670916.1 5242041 D 76869 CDS YP_001670917.1 167035686 5872506 5245021..5246463 1 NC_010322.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4730 response regulator CbrB; Fis family two component sigma-54 specific transcriptional regulator 5246463 5872506 PputGB1_4695 Pseudomonas putida GB-1 Fis family two component sigma-54 specific transcriptional regulator YP_001670917.1 5245021 D 76869 CDS YP_001670918.1 167035687 5872507 5247261..5248649 1 NC_010322.1 KEGG: pen:PSEEN4733 poly(A) polymerase I (PAP); TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 5248649 5872507 PputGB1_4696 Pseudomonas putida GB-1 poly(A) polymerase YP_001670918.1 5247261 D 76869 CDS YP_001670919.1 167035688 5872508 5248646..5249125 1 NC_010322.1 KEGG: pen:PSEEN4734 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5249125 5872508 PputGB1_4697 Pseudomonas putida GB-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001670919.1 5248646 D 76869 CDS YP_001670920.1 167035689 5872509 5249388..5250188 1 NC_010322.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5250188 panB 5872509 panB Pseudomonas putida GB-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001670920.1 5249388 D 76869 CDS YP_001670921.1 167035690 5872510 5250185..5251048 1 NC_010322.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5251048 panC 5872510 panC Pseudomonas putida GB-1 pantoate--beta-alanine ligase YP_001670921.1 5250185 D 76869 CDS YP_001670922.1 167035691 5872511 5251226..5252890 1 NC_010322.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5252890 pgi 5872511 pgi Pseudomonas putida GB-1 glucose-6-phosphate isomerase YP_001670922.1 5251226 D 76869 CDS YP_001670923.1 167035692 5872512 5253026..5254960 1 NC_010322.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5254960 5872512 PputGB1_4701 Pseudomonas putida GB-1 acetyl-CoA synthetase YP_001670923.1 5253026 D 76869 CDS YP_001670924.1 167035693 5872513 5255003..5255872 1 NC_010322.1 KEGG: pen:PSEEN4739 hypothetical protein; hypothetical protein 5255872 5872513 PputGB1_4702 Pseudomonas putida GB-1 hypothetical protein YP_001670924.1 5255003 D 76869 CDS YP_001670925.1 167035694 5872514 5255951..5258887 1 NC_010322.1 PFAM: protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein; hypothetical protein 5258887 5872514 PputGB1_4703 Pseudomonas putida GB-1 hypothetical protein YP_001670925.1 5255951 D 76869 CDS YP_001670926.1 167035695 5872515 complement(5258999..5259418) 1 NC_010322.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN4741 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 5259418 5872515 PputGB1_4704 Pseudomonas putida GB-1 glyoxalase/bleomycin resistance protein/dioxygenase YP_001670926.1 5258999 R 76869 CDS YP_001670927.1 167035696 5872516 5259488..5259781 1 NC_010322.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4742 hypothetical protein; antibiotic biosynthesis monooxygenase 5259781 5872516 PputGB1_4705 Pseudomonas putida GB-1 antibiotic biosynthesis monooxygenase YP_001670927.1 5259488 D 76869 CDS YP_001670928.1 167035697 5872517 complement(5259859..5260209) 1 NC_010322.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN0800 hypothetical protein; transport-associated 5260209 5872517 PputGB1_4706 Pseudomonas putida GB-1 transport-associated YP_001670928.1 5259859 R 76869 CDS YP_001670929.1 167035698 5872518 complement(5260474..5262579) 1 NC_010322.1 KEGG: pen:PSEEN0799 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 5262579 5872518 PputGB1_4707 Pseudomonas putida GB-1 polynucleotide phosphorylase/polyadenylase YP_001670929.1 5260474 R 76869 CDS YP_001670930.1 167035699 5872519 complement(5262595..5262750) 1 NC_010322.1 hypothetical protein 5262750 5872519 PputGB1_4708 Pseudomonas putida GB-1 hypothetical protein YP_001670930.1 5262595 R 76869 CDS YP_001670931.1 167035700 5872520 complement(5262830..5263099) 1 NC_010322.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 5263099 rpsO 5872520 rpsO Pseudomonas putida GB-1 30S ribosomal protein S15 YP_001670931.1 5262830 R 76869 CDS YP_001670932.1 167035701 5872521 complement(5263247..5264164) 1 NC_010322.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 5264164 truB 5872521 truB Pseudomonas putida GB-1 tRNA pseudouridine synthase B YP_001670932.1 5263247 R 76869 CDS YP_001670933.1 167035702 5872522 complement(5264168..5264566) 1 NC_010322.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 5264566 rbfA 5872522 rbfA Pseudomonas putida GB-1 ribosome-binding factor A YP_001670933.1 5264168 R 76869 CDS YP_001670934.1 167035703 5872523 complement(5264683..5267211) 1 NC_010322.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 5267211 infB 5872523 infB Pseudomonas putida GB-1 translation initiation factor IF-2 YP_001670934.1 5264683 R 76869 CDS YP_001670935.1 167035704 5872524 complement(5267239..5268720) 1 NC_010322.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 5268720 nusA 5872524 nusA Pseudomonas putida GB-1 transcription elongation factor NusA YP_001670935.1 5267239 R 76869 CDS YP_001670936.1 167035705 5872525 complement(5268780..5269238) 1 NC_010322.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 5269238 5872525 PputGB1_4714 Pseudomonas putida GB-1 hypothetical protein YP_001670936.1 5268780 R 76869 CDS YP_001670937.1 167035706 5872528 complement(5269653..5270051) 1 NC_010322.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pen:PSEEN0792 preprotein translocase SecG subunit; preprotein translocase subunit SecG 5270051 secG 5872528 secG Pseudomonas putida GB-1 preprotein translocase subunit SecG YP_001670937.1 5269653 R 76869 CDS YP_001670938.1 167035707 5872529 complement(5270056..5270811) 1 NC_010322.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 5270811 tpiA 5872529 tpiA Pseudomonas putida GB-1 triosephosphate isomerase YP_001670938.1 5270056 R 76869 CDS YP_001670939.1 167035708 5872530 complement(5270877..5272217) 1 NC_010322.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 5272217 glmM 5872530 glmM Pseudomonas putida GB-1 phosphoglucosamine mutase YP_001670939.1 5270877 R 76869 CDS YP_001670940.1 167035709 5872531 complement(5272234..5273085) 1 NC_010322.1 KEGG: pen:PSEEN0788 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 5273085 5872531 PputGB1_4718 Pseudomonas putida GB-1 dihydropteroate synthase YP_001670940.1 5272234 R 76869 CDS YP_001670941.1 167035710 5872532 complement(5273094..5274998) 1 NC_010322.1 KEGG: pen:PSEEN0787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 5274998 5872532 PputGB1_4719 Pseudomonas putida GB-1 ATP-dependent metalloprotease FtsH YP_001670941.1 5273094 R 76869 CDS YP_001670942.1 167035711 5872533 complement(5275202..5275828) 1 NC_010322.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pen:PSEEN0786 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent; ribosomal RNA methyltransferase RrmJ/FtsJ 5275828 5872533 PputGB1_4720 Pseudomonas putida GB-1 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001670942.1 5275202 R 76869 CDS YP_001670943.1 167035712 5872534 5275931..5276239 1 NC_010322.1 PFAM: protein of unknown function UPF0044; KEGG: pen:PSEEN0785 hypothetical protein; hypothetical protein 5276239 5872534 PputGB1_4721 Pseudomonas putida GB-1 hypothetical protein YP_001670943.1 5275931 D 76869 CDS YP_001670944.1 167035713 5872535 complement(5276252..5276701) 1 NC_010322.1 KEGG: pen:PSEEN0784 hypothetical protein; hypothetical protein 5276701 5872535 PputGB1_4722 Pseudomonas putida GB-1 hypothetical protein YP_001670944.1 5276252 R 76869 CDS YP_001670945.1 167035714 5872536 complement(5276679..5277161) 1 NC_010322.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 5277161 greA 5872536 greA Pseudomonas putida GB-1 transcription elongation factor GreA YP_001670945.1 5276679 R 76869 CDS YP_001670946.1 167035715 5872537 complement(5277158..5280379) 1 NC_010322.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 5280379 carB 5872537 carB Pseudomonas putida GB-1 carbamoyl phosphate synthase large subunit YP_001670946.1 5277158 R 76869 CDS YP_001670947.1 167035716 5872538 complement(5280485..5281621) 1 NC_010322.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 5281621 5872538 PputGB1_4725 Pseudomonas putida GB-1 carbamoyl phosphate synthase small subunit YP_001670947.1 5280485 R 76869 CDS YP_001670948.1 167035717 5872539 complement(5281886..5282689) 1 NC_010322.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 5282689 5872539 PputGB1_4726 Pseudomonas putida GB-1 dihydrodipicolinate reductase YP_001670948.1 5281886 R 76869 CDS YP_001670949.1 167035718 5872540 complement(5282703..5283827) 1 NC_010322.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 5283827 5872540 PputGB1_4727 Pseudomonas putida GB-1 chaperone protein DnaJ YP_001670949.1 5282703 R 76869 CDS YP_001670950.1 167035719 5872541 complement(5284021..5285946) 1 NC_010322.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 5285946 dnaK 5872541 dnaK Pseudomonas putida GB-1 molecular chaperone DnaK YP_001670950.1 5284021 R 76869 CDS YP_001670951.1 167035720 5872542 complement(5286048..5286602) 1 NC_010322.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 5286602 5872542 PputGB1_4729 Pseudomonas putida GB-1 heat shock protein GrpE YP_001670951.1 5286048 R 76869 CDS YP_001670952.1 167035721 5872543 5286793..5288466 1 NC_010322.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pen:PSEEN0776 DNA repair protein RecN; DNA repair protein RecN 5288466 5872543 PputGB1_4730 Pseudomonas putida GB-1 DNA repair protein RecN YP_001670952.1 5286793 D 76869 CDS YP_001670953.1 167035722 5872544 complement(5288584..5288988) 1 NC_010322.1 PFAM: ferric-uptake regulator; KEGG: pen:PSEEN0775 transcriptional repressor for ferric uptake; ferric uptake regulator family protein 5288988 5872544 PputGB1_4731 Pseudomonas putida GB-1 ferric uptake regulator family protein YP_001670953.1 5288584 R 76869 CDS YP_001670954.1 167035723 5872545 5289086..5289622 1 NC_010322.1 PFAM: SmpA/OmlA domain protein; KEGG: pen:PSEEN0773 outer membrane lipoprotein OmlA; SmpA/OmlA domain-containing protein 5289622 5872545 PputGB1_4732 Pseudomonas putida GB-1 SmpA/OmlA domain-containing protein YP_001670954.1 5289086 D 76869 CDS YP_001670955.1 167035724 5872546 complement(5289683..5290117) 1 NC_010322.1 PFAM: cyclase/dehydrase; KEGG: pen:PSEEN0771 hypothetical protein; cyclase/dehydrase 5290117 5872546 PputGB1_4733 Pseudomonas putida GB-1 cyclase/dehydrase YP_001670955.1 5289683 R 76869 CDS YP_001670956.1 167035725 5872547 5290281..5290763 1 NC_010322.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5290763 smpB 5872547 smpB Pseudomonas putida GB-1 SsrA-binding protein YP_001670956.1 5290281 D 76869 CDS YP_001670957.1 167035726 5872548 complement(5290896..5291663) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0769 transcriptional regulator, GntR family; GntR family transcriptional regulator 5291663 5872548 PputGB1_4735 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670957.1 5290896 R 76869 CDS YP_001670958.1 167035727 5872549 5291918..5293588 1 NC_010322.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pen:PSEEN0768 L-lactate permease; L-lactate transport 5293588 5872549 PputGB1_4736 Pseudomonas putida GB-1 L-lactate transport YP_001670958.1 5291918 D 76869 CDS YP_001670959.1 167035728 5872550 5293652..5294797 1 NC_010322.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5294797 lldD 5872550 lldD Pseudomonas putida GB-1 L-lactate dehydrogenase YP_001670959.1 5293652 D 76869 CDS YP_001670960.1 167035729 5872551 5294873..5297683 1 NC_010322.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN0766 D-lactate deshydrogenase; D-lactate dehydrogenase 5297683 5872551 PputGB1_4738 Pseudomonas putida GB-1 D-lactate dehydrogenase YP_001670960.1 5294873 D 76869 CDS YP_001670961.1 167035730 5872552 5298003..5298293 1 NC_010322.1 KEGG: pen:PSEEN0762 hypothetical protein; hypothetical protein 5298293 5872552 PputGB1_4739 Pseudomonas putida GB-1 hypothetical protein YP_001670961.1 5298003 D 76869 CDS YP_001670962.1 167035731 5872554 5298977..5300233 1 NC_010322.1 PFAM: integrase family protein; KEGG: pmy:Pmen_1188 phage integrase family protein; integrase family protein 5300233 5872554 PputGB1_4740 Pseudomonas putida GB-1 integrase family protein YP_001670962.1 5298977 D 76869 CDS YP_001670963.1 167035732 5872555 5300575..5300904 1 NC_010322.1 KEGG: har:HEAR1848 conserved hypothetical protein in putative prophage region; hypothetical protein 5300904 5872555 PputGB1_4741 Pseudomonas putida GB-1 hypothetical protein YP_001670963.1 5300575 D 76869 CDS YP_001670964.1 167035733 5872556 5300976..5301944 1 NC_010322.1 KEGG: pmy:Pmen_1184 hypothetical protein; hypothetical protein 5301944 5872556 PputGB1_4742 Pseudomonas putida GB-1 hypothetical protein YP_001670964.1 5300976 D 76869 CDS YP_001670965.1 167035734 5872557 5302021..5303025 1 NC_010322.1 KEGG: pmy:Pmen_1183 phage-related protein predicted endonuclease-like protein; phage-like protein endonuclease-like protein 5303025 5872557 PputGB1_4743 Pseudomonas putida GB-1 phage-like protein endonuclease-like protein YP_001670965.1 5302021 D 76869 CDS YP_001670966.1 167035735 5872558 5303103..5304017 1 NC_010322.1 KEGG: pmy:Pmen_1182 hypothetical protein; hypothetical protein 5304017 5872558 PputGB1_4744 Pseudomonas putida GB-1 hypothetical protein YP_001670966.1 5303103 D 76869 CDS YP_001670967.1 167035736 5872559 5304068..5304556 1 NC_010322.1 PFAM: DNA repair protein RadC; KEGG: pmy:Pmen_1181 DNA repair protein RadC; DNA repair protein RadC 5304556 5872559 PputGB1_4745 Pseudomonas putida GB-1 DNA repair protein RadC YP_001670967.1 5304068 D 76869 CDS YP_001670968.1 167035737 5872560 complement(5304732..5306126) 1 NC_010322.1 PFAM: Restriction endonuclease EcoRII; KEGG: bfr:BF3682 type II restriction endonuclease; restriction endonuclease EcoRII 5306126 5872560 PputGB1_4746 Pseudomonas putida GB-1 restriction endonuclease EcoRII YP_001670968.1 5304732 R 76869 CDS YP_001670969.1 167035738 5872561 complement(5306428..5306904) 1 NC_010322.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: hha:Hhal_0413 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr 5306904 5872561 PputGB1_4747 Pseudomonas putida GB-1 DNA mismatch endonuclease Vsr YP_001670969.1 5306428 R 76869 CDS YP_001670970.1 167035739 5872562 complement(5306912..5308255) 1 NC_010322.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: plu:plu0338 DNA-cytosine methyltransferase; DNA cytosine methylase 5308255 5872562 PputGB1_4748 Pseudomonas putida GB-1 DNA cytosine methylase YP_001670970.1 5306912 R 76869 CDS YP_001670971.1 167035740 5872563 complement(5308311..5308766) 1 NC_010322.1 KEGG: psa:PST_3400 transposase-like protein TnpA3; transposase-like protein TnpA3 5308766 5872563 PputGB1_4749 Pseudomonas putida GB-1 transposase-like protein TnpA3 YP_001670971.1 5308311 R 76869 CDS YP_001670972.1 167035741 5872564 complement(5308900..5309745) 1 NC_010322.1 PFAM: HNH endonuclease; KEGG: kpn:KPN_04695 hypothetical protein; HNH endonuclease 5309745 5872564 PputGB1_4750 Pseudomonas putida GB-1 HNH endonuclease YP_001670972.1 5308900 R 76869 CDS YP_001670973.1 167035742 5872565 complement(5309753..5311366) 1 NC_010322.1 KEGG: stp:Strop_0567 hypothetical protein; hypothetical protein 5311366 5872565 PputGB1_4751 Pseudomonas putida GB-1 hypothetical protein YP_001670973.1 5309753 R 76869 CDS YP_001670974.1 167035743 5872566 complement(5311381..5311794) 1 NC_010322.1 KEGG: bfr:BF3682 type II restriction endonuclease; hypothetical protein 5311794 5872566 PputGB1_4752 Pseudomonas putida GB-1 hypothetical protein YP_001670974.1 5311381 R 76869 CDS YP_001670975.1 167035744 5872567 complement(5311797..5313698) 1 NC_010322.1 KEGG: rci:LRC70 putative DNA/RNA helicase (SNF2 family); PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 5313698 5872567 PputGB1_4753 Pseudomonas putida GB-1 non-specific serine/threonine protein kinase YP_001670975.1 5311797 R 76869 CDS YP_001670976.1 167035745 5872568 complement(5313959..5314558) 1 NC_010322.1 KEGG: slo:Shew_1252 transposase; transposase 5314558 5872568 PputGB1_4754 Pseudomonas putida GB-1 transposase YP_001670976.1 5313959 R 76869 CDS YP_001670977.1 167035746 5872569 complement(5315107..5315289) 1 NC_010322.1 PFAM: Prophage CP4-57 regulatory; KEGG: spc:Sputcn32_3522 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 5315289 5872569 PputGB1_4755 Pseudomonas putida GB-1 phage transcriptional regulator AlpA YP_001670977.1 5315107 R 76869 CDS YP_001670978.1 167035747 5872570 5315869..5316630 1 NC_010322.1 KEGG: pmy:Pmen_1158 hypothetical protein; hypothetical protein 5316630 5872570 PputGB1_4756 Pseudomonas putida GB-1 hypothetical protein YP_001670978.1 5315869 D 76869 CDS YP_001670979.1 167035748 5872571 5317896..5321141 1 NC_010322.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: hpy:HP0733 hypothetical protein; hypothetical protein 5321141 5872571 PputGB1_4757 Pseudomonas putida GB-1 hypothetical protein YP_001670979.1 5317896 D 76869 CDS YP_001670980.1 167035749 5872572 5321141..5322844 1 NC_010322.1 KEGG: hpa:HPAG1_0715 labile enterotoxin output A; labile enterotoxin output A 5322844 5872572 PputGB1_4758 Pseudomonas putida GB-1 labile enterotoxin output A YP_001670980.1 5321141 D 76869 CDS YP_001670981.1 167035750 5872573 complement(5322904..5323161) 1 NC_010322.1 hypothetical protein 5323161 5872573 PputGB1_4759 Pseudomonas putida GB-1 hypothetical protein YP_001670981.1 5322904 R 76869 CDS YP_001670982.1 167035751 5872574 5323281..5324156 1 NC_010322.1 KEGG: psa:PST_0849 predicted transcriptional regulator; transcriptional regulator 5324156 5872574 PputGB1_4760 Pseudomonas putida GB-1 transcriptional regulator YP_001670982.1 5323281 D 76869 CDS YP_001670983.1 167035752 5872575 complement(5324255..5326648) 1 NC_010322.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_3640 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5326648 5872575 PputGB1_4761 Pseudomonas putida GB-1 TonB-dependent siderophore receptor YP_001670983.1 5324255 R 76869 CDS YP_001670984.1 167035753 5872576 complement(5326768..5328312) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0751 transport protein, MFS superfamily; major facilitator superfamily transporter 5328312 5872576 PputGB1_4762 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670984.1 5326768 R 76869 CDS YP_001670985.1 167035754 5872577 5328439..5329308 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0750 transcriptional regulator, LysR family; LysR family transcriptional regulator 5329308 5872577 PputGB1_4763 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001670985.1 5328439 D 76869 CDS YP_001670986.1 167035755 5872578 complement(5329316..5329798) 1 NC_010322.1 PFAM: protein of unknown function DUF1016; KEGG: psb:Psyr_0608 protein of unknown function DUF1016; hypothetical protein 5329798 5872578 PputGB1_4764 Pseudomonas putida GB-1 hypothetical protein YP_001670986.1 5329316 R 76869 CDS YP_001670987.1 167035756 5872579 complement(5330038..5331429) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; amino acid permease-associated protein 5331429 5872579 PputGB1_4765 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001670987.1 5330038 R 76869 CDS YP_001670988.1 167035757 5872580 complement(5331817..5333172) 1 NC_010322.1 KEGG: pen:PSEEN0731 D-glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 5333172 5872580 PputGB1_4766 Pseudomonas putida GB-1 glucarate dehydratase YP_001670988.1 5331817 R 76869 CDS YP_001670989.1 167035758 5872581 complement(5333192..5334544) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0730 transport protein, MFS superfamily; major facilitator superfamily transporter 5334544 5872581 PputGB1_4767 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001670989.1 5333192 R 76869 CDS YP_001670990.1 167035759 5872582 5334805..5335506 1 NC_010322.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0729 transcriptional regulator, GntR family; GntR family transcriptional regulator 5335506 5872582 PputGB1_4768 Pseudomonas putida GB-1 GntR family transcriptional regulator YP_001670990.1 5334805 D 76869 CDS YP_001670991.1 167035760 5872583 complement(5335673..5336434) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stt:t2116 ABC transporter ATP-binding protein; ABC transporter-like protein 5336434 5872583 PputGB1_4769 Pseudomonas putida GB-1 ABC transporter-like protein YP_001670991.1 5335673 R 76869 CDS YP_001670992.1 167035761 5872584 complement(5336431..5337492) 1 NC_010322.1 PFAM: transport system permease protein; KEGG: pfl:PFL_3501 heme/hemin ABC transporter, permease protein; transport system permease 5337492 5872584 PputGB1_4770 Pseudomonas putida GB-1 transport system permease YP_001670992.1 5336431 R 76869 CDS YP_001670993.1 167035762 5872585 complement(5337489..5338601) 1 NC_010322.1 PFAM: periplasmic binding protein; KEGG: bur:Bcep18194_C7105 ABC Fe3+-hydroxamate transporter, periplasmic ligand binding protein; periplasmic binding protein 5338601 5872585 PputGB1_4771 Pseudomonas putida GB-1 periplasmic binding protein YP_001670993.1 5337489 R 76869 CDS YP_001670994.1 167035763 5872586 complement(5338732..5339742) 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0727 oxidoreductase, zinc-binding alcohol dehydrogenase; alcohol dehydrogenase 5339742 5872586 PputGB1_4772 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001670994.1 5338732 R 76869 CDS YP_001670995.1 167035764 5872587 complement(5339845..5340438) 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 5340438 5872587 PputGB1_4773 Pseudomonas putida GB-1 HAD family hydrolase YP_001670995.1 5339845 R 76869 CDS YP_001670996.1 167035765 5872588 complement(5340435..5341304) 1 NC_010322.1 KEGG: pen:PSEEN0725 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 5341304 5872588 PputGB1_4774 Pseudomonas putida GB-1 acyl-CoA thioesterase II YP_001670996.1 5340435 R 76869 CDS YP_001670997.1 167035766 5872589 complement(5341452..5342021) 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0723 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5342021 5872589 PputGB1_4775 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001670997.1 5341452 R 76869 CDS YP_001670998.1 167035767 5872590 5342201..5342887 1 NC_010322.1 PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN0722 hypothetical protein; putative phosphohistidine phosphatase, SixA 5342887 5872590 PputGB1_4776 Pseudomonas putida GB-1 putative phosphohistidine phosphatase, SixA YP_001670998.1 5342201 D 76869 CDS YP_001670999.1 167035768 5872591 5342926..5343840 1 NC_010322.1 PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN0720 hydrolase; histone deacetylase family protein; histone deacetylase superfamily protein 5343840 5872591 PputGB1_4777 Pseudomonas putida GB-1 histone deacetylase superfamily protein YP_001670999.1 5342926 D 76869 CDS YP_001671000.1 167035769 5872592 5343989..5345230 1 NC_010322.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: pen:PSEEN0719 hypothetical protein; hypothetical protein 5345230 5872592 PputGB1_4778 Pseudomonas putida GB-1 hypothetical protein YP_001671000.1 5343989 D 76869 CDS YP_001671001.1 167035770 5872593 complement(5345339..5346670) 1 NC_010322.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN0718 ATP-dependent RNA helicase, DEAD box family (RhlE); DEAD/DEAH box helicase 5346670 5872593 PputGB1_4779 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001671001.1 5345339 R 76869 CDS YP_001671002.1 167035771 5872594 complement(5346726..5347640) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4787 transporter; hypothetical protein 5347640 5872594 PputGB1_4780 Pseudomonas putida GB-1 hypothetical protein YP_001671002.1 5346726 R 76869 CDS YP_001671003.1 167035772 5872595 complement(5347774..5348379) 1 NC_010322.1 KEGG: pfo:Pfl_4924 exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 5348379 5872595 PputGB1_4781 Pseudomonas putida GB-1 DNA polymerase III subunit epsilon YP_001671003.1 5347774 R 76869 CDS YP_001671004.1 167035773 5872596 complement(5348388..5348867) 1 NC_010322.1 PFAM: protein of unknown function DUF88; KEGG: pen:PSEEN4789 hypothetical protein; hypothetical protein 5348867 5872596 PputGB1_4782 Pseudomonas putida GB-1 hypothetical protein YP_001671004.1 5348388 R 76869 CDS YP_001671005.1 167035774 5872597 complement(5349048..5349806) 1 NC_010322.1 KEGG: pen:PSEEN4790 hypothetical protein; putative periplasmic ligand-binding sensor protein 5349806 5872597 PputGB1_4783 Pseudomonas putida GB-1 putative periplasmic ligand-binding sensor protein YP_001671005.1 5349048 R 76869 CDS YP_001671006.1 167035775 5872598 5349973..5350629 1 NC_010322.1 PFAM: protein of unknown function UPF0259; KEGG: pen:PSEEN4791 hypothetical protein; hypothetical protein 5350629 5872598 PputGB1_4784 Pseudomonas putida GB-1 hypothetical protein YP_001671006.1 5349973 D 76869 CDS YP_001671007.1 167035776 5872599 5350717..5351208 1 NC_010322.1 hypothetical protein 5351208 5872599 PputGB1_4785 Pseudomonas putida GB-1 hypothetical protein YP_001671007.1 5350717 D 76869 CDS YP_001671008.1 167035777 5872600 complement(5351227..5353320) 1 NC_010322.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; KEGG: pen:PSEEN4792 helicase, ATP-dependent; ATP-dependent helicase HrpB 5353320 5872600 PputGB1_4786 Pseudomonas putida GB-1 ATP-dependent helicase HrpB YP_001671008.1 5351227 R 76869 CDS YP_001671009.1 167035778 5872601 5353455..5355815 1 NC_010322.1 KEGG: mmw:Mmwyl1_4223 hypothetical protein; hypothetical protein 5355815 5872601 PputGB1_4787 Pseudomonas putida GB-1 hypothetical protein YP_001671009.1 5353455 D 76869 CDS YP_001671010.1 167035779 5872602 5355799..5357901 1 NC_010322.1 PFAM: integrase family protein; KEGG: pst:PSPTO_4746 site-specific recombinase, phage integrase family domain protein; integrase family protein 5357901 5872602 PputGB1_4788 Pseudomonas putida GB-1 integrase family protein YP_001671010.1 5355799 D 76869 CDS YP_001671011.1 167035780 5872603 5357898..5358524 1 NC_010322.1 KEGG: pst:PSPTO_4747 hypothetical protein; hypothetical protein 5358524 5872603 PputGB1_4789 Pseudomonas putida GB-1 hypothetical protein YP_001671011.1 5357898 D 76869 CDS YP_001671012.1 167035781 5872604 5358502..5359968 1 NC_010322.1 PFAM: integrase family protein; KEGG: pst:PSPTO_4748 site-specific recombinase, phage integrase family; integrase family protein 5359968 5872604 PputGB1_4790 Pseudomonas putida GB-1 integrase family protein YP_001671012.1 5358502 D 76869 CDS YP_001671013.1 167035782 5872605 complement(5360527..5360682) 1 NC_010322.1 KEGG: pst:PSPTO_5591 ISPsy5, transposase; ISPsy5, transposase 5360682 5872605 PputGB1_4791 Pseudomonas putida GB-1 ISPsy5, transposase YP_001671013.1 5360527 R 76869 CDS YP_001671014.1 167035783 5872606 complement(5360715..5362235) 1 NC_010322.1 PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 5362235 5872606 PputGB1_4792 Pseudomonas putida GB-1 transposase IS66 YP_001671014.1 5360715 R 76869 CDS YP_001671015.1 167035784 5872607 complement(5362263..5362622) 1 NC_010322.1 PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein 5362622 5872607 PputGB1_4793 Pseudomonas putida GB-1 IS66 Orf2 family protein YP_001671015.1 5362263 R 76869 CDS YP_001671016.1 167035785 5872608 complement(5363121..5363489) 1 NC_010322.1 KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 5363489 5872608 PputGB1_4794 Pseudomonas putida GB-1 hypothetical protein YP_001671016.1 5363121 R 76869 CDS YP_001671017.1 167035786 5872609 complement(5363618..5364736) 1 NC_010322.1 PFAM: RES domain protein; KEGG: neu:NE0745 hypothetical protein; RES domain-containing protein 5364736 5872609 PputGB1_4795 Pseudomonas putida GB-1 RES domain-containing protein YP_001671017.1 5363618 R 76869 CDS YP_001671018.1 167035787 5872610 complement(5364895..5365803) 1 NC_010322.1 hypothetical protein 5365803 5872610 PputGB1_4796 Pseudomonas putida GB-1 hypothetical protein YP_001671018.1 5364895 R 76869 CDS YP_001671019.1 167035788 5872611 complement(5365947..5366450) 1 NC_010322.1 KEGG: psp:PSPPH_0671 prophage PSPPH01, ImpB/MucB/SamB family protein; hypothetical protein 5366450 5872611 PputGB1_4797 Pseudomonas putida GB-1 hypothetical protein YP_001671019.1 5365947 R 76869 CDS YP_001671020.1 167035789 5872612 complement(5366496..5366714) 1 NC_010322.1 KEGG: xcb:XC_2789 hypothetical protein; hypothetical protein 5366714 5872612 PputGB1_4798 Pseudomonas putida GB-1 hypothetical protein YP_001671020.1 5366496 R 76869 CDS YP_001671021.1 167035790 5872613 complement(5366732..5368558) 1 NC_010322.1 PFAM: protein of unknown function DUF262; KEGG: sse:Ssed_2266 DUF262; hypothetical protein 5368558 5872613 PputGB1_4799 Pseudomonas putida GB-1 hypothetical protein YP_001671021.1 5366732 R 76869 CDS YP_001671022.1 167035791 5872614 complement(5369036..5369392) 1 NC_010322.1 KEGG: maq:Maqu_3373 hypothetical protein; hypothetical protein 5369392 5872614 PputGB1_4800 Pseudomonas putida GB-1 hypothetical protein YP_001671022.1 5369036 R 76869 CDS YP_001671023.1 167035792 5872615 complement(5369466..5370287) 1 NC_010322.1 PFAM: protein of unknown function UPF0174; KEGG: pau:PA14_03370 hypothetical protein; hypothetical protein 5370287 5872615 PputGB1_4801 Pseudomonas putida GB-1 hypothetical protein YP_001671023.1 5369466 R 76869 CDS YP_001671024.1 167035793 5872616 complement(5370284..5370901) 1 NC_010322.1 SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 5370901 5872616 PputGB1_4802 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001671024.1 5370284 R 76869 CDS YP_001671025.1 167035794 5872617 5371945..5372334 1 NC_010322.1 hypothetical protein 5372334 5872617 PputGB1_4803 Pseudomonas putida GB-1 hypothetical protein YP_001671025.1 5371945 D 76869 CDS YP_001671026.1 167035795 5872618 complement(5372372..5372731) 1 NC_010322.1 hypothetical protein 5372731 5872618 PputGB1_4804 Pseudomonas putida GB-1 hypothetical protein YP_001671026.1 5372372 R 76869 CDS YP_001671027.1 167035796 5872619 complement(5372789..5373517) 1 NC_010322.1 PFAM: metallophosphoesterase; KEGG: pst:PSPTO_0031 Ser/Thr protein phosphatase family protein; metallophosphoesterase 5373517 5872619 PputGB1_4805 Pseudomonas putida GB-1 metallophosphoesterase YP_001671027.1 5372789 R 76869 CDS YP_001671028.1 167035797 5872620 complement(5373597..5374160) 1 NC_010322.1 hypothetical protein 5374160 5872620 PputGB1_4806 Pseudomonas putida GB-1 hypothetical protein YP_001671028.1 5373597 R 76869 CDS YP_001671029.1 167035798 5872621 5374940..5375404 1 NC_010322.1 PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4760 DNA-binding protein; Fis family transcriptional regulator 5375404 5872621 PputGB1_4807 Pseudomonas putida GB-1 Fis family transcriptional regulator YP_001671029.1 5374940 D 76869 CDS YP_001671030.1 167035799 5872622 complement(5375561..5378095) 1 NC_010322.1 KEGG: psa:PST_0583 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 5378095 5872622 PputGB1_4808 Pseudomonas putida GB-1 ATP-dependent helicase HrpB YP_001671030.1 5375561 R 76869 CDS YP_001671031.1 167035800 5872623 complement(5378194..5378616) 1 NC_010322.1 hypothetical protein 5378616 5872623 PputGB1_4809 Pseudomonas putida GB-1 hypothetical protein YP_001671031.1 5378194 R 76869 CDS YP_001671032.1 167035801 5872624 complement(5378668..5378934) 1 NC_010322.1 hypothetical protein 5378934 5872624 PputGB1_4810 Pseudomonas putida GB-1 hypothetical protein YP_001671032.1 5378668 R 76869 CDS YP_001671033.1 167035802 5872625 complement(5379057..5379263) 1 NC_010322.1 KEGG: hne:HNE_0069 hypothetical protein; hypothetical protein 5379263 5872625 PputGB1_4811 Pseudomonas putida GB-1 hypothetical protein YP_001671033.1 5379057 R 76869 CDS YP_001671034.1 167035803 5872626 complement(5379266..5379520) 1 NC_010322.1 KEGG: psp:PSPPH_0607 hypothetical protein; hypothetical protein 5379520 5872626 PputGB1_4812 Pseudomonas putida GB-1 hypothetical protein YP_001671034.1 5379266 R 76869 CDS YP_001671035.1 167035804 5872627 complement(5380099..5381367) 1 NC_010322.1 KEGG: xcb:XC_2441 hypothetical protein; hypothetical protein 5381367 5872627 PputGB1_4813 Pseudomonas putida GB-1 hypothetical protein YP_001671035.1 5380099 R 76869 CDS YP_001671036.1 167035805 5872628 complement(5381364..5382308) 1 NC_010322.1 KEGG: xcb:XC_2442 hypothetical protein; hypothetical protein 5382308 5872628 PputGB1_4814 Pseudomonas putida GB-1 hypothetical protein YP_001671036.1 5381364 R 76869 CDS YP_001671037.1 167035806 5872629 complement(5382289..5384160) 1 NC_010322.1 PFAM: KAP P-loop domain protein; KEGG: xcb:XC_2443 hypothetical protein; KAP P-loop domain-containing protein 5384160 5872629 PputGB1_4815 Pseudomonas putida GB-1 KAP P-loop domain-containing protein YP_001671037.1 5382289 R 76869 CDS YP_001671038.1 167035807 5872630 complement(5384330..5385697) 1 NC_010322.1 hypothetical protein 5385697 5872630 PputGB1_4816 Pseudomonas putida GB-1 hypothetical protein YP_001671038.1 5384330 R 76869 CDS YP_001671039.1 167035808 5872631 complement(5386033..5386470) 1 NC_010322.1 PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein 5386470 5872631 PputGB1_4817 Pseudomonas putida GB-1 transposase IS4 family protein YP_001671039.1 5386033 R 76869 CDS YP_001671040.1 167035809 5872632 complement(5386518..5386886) 1 NC_010322.1 KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA 5386886 5872632 PputGB1_4818 Pseudomonas putida GB-1 ISPs1, transposase OrfA YP_001671040.1 5386518 R 76869 CDS YP_001671041.1 167035810 5872633 complement(5386967..5387236) 1 NC_010322.1 hypothetical protein 5387236 5872633 PputGB1_4819 Pseudomonas putida GB-1 hypothetical protein YP_001671041.1 5386967 R 76869 CDS YP_001671042.1 167035811 5872634 complement(5387471..5389177) 1 NC_010322.1 KEGG: pen:PSEEN1852 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5389177 5872634 PputGB1_4820 Pseudomonas putida GB-1 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001671042.1 5387471 R 76869 CDS YP_001671043.1 167035812 5872636 complement(5390944..5391924) 1 NC_010322.1 PFAM: transposase IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase; transposase IS4 family protein 5391924 5872636 PputGB1_4823 Pseudomonas putida GB-1 transposase IS4 family protein YP_001671043.1 5390944 R 76869 CDS YP_001671044.1 167035813 5872637 5392187..5392555 1 NC_010322.1 KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA 5392555 5872637 PputGB1_4824 Pseudomonas putida GB-1 ISPs1, transposase OrfA YP_001671044.1 5392187 D 76869 CDS YP_001671045.1 167035814 5872638 5392603..5393040 1 NC_010322.1 PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein 5393040 5872638 PputGB1_4825 Pseudomonas putida GB-1 transposase IS4 family protein YP_001671045.1 5392603 D 76869 CDS YP_001671046.1 167035815 5872639 complement(5393037..5393699) 1 NC_010322.1 SMART: DEAD-like helicase; KEGG: pst:PSPTO_4773 ATP-dependent helicase, N-terminal domain protein; DEAD/DEAH box helicase 5393699 5872639 PputGB1_4826 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001671046.1 5393037 R 76869 CDS YP_001671047.1 167035816 5872640 5393816..5394235 1 NC_010322.1 KEGG: pen:PSEEN4793 hypothetical protein; hypothetical protein 5394235 5872640 PputGB1_4827 Pseudomonas putida GB-1 hypothetical protein YP_001671047.1 5393816 D 76869 CDS YP_001671048.1 167035817 5872641 5394258..5395130 1 NC_010322.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pen:PSEEN4794 cation efflux protein; cation diffusion facilitator family transporter 5395130 5872641 PputGB1_4828 Pseudomonas putida GB-1 cation diffusion facilitator family transporter YP_001671048.1 5394258 D 76869 CDS YP_001671049.1 167035818 5872642 complement(5395165..5396001) 1 NC_010322.1 KEGG: pen:PSEEN4795 hypothetical protein; hypothetical protein 5396001 5872642 PputGB1_4829 Pseudomonas putida GB-1 hypothetical protein YP_001671049.1 5395165 R 76869 CDS YP_001671050.1 167035819 5872643 5396393..5396869 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: pen:PSEEN4796 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5396869 5872643 PputGB1_4830 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001671050.1 5396393 D 76869 CDS YP_001671051.1 167035820 5872644 5396924..5397127 1 NC_010322.1 KEGG: pen:PSEEN4797 hypothetical protein; hypothetical protein 5397127 5872644 PputGB1_4831 Pseudomonas putida GB-1 hypothetical protein YP_001671051.1 5396924 D 76869 CDS YP_001671052.1 167035821 5872645 complement(5397163..5397801) 1 NC_010322.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN4798 pseudouridylate synthase; pseudouridine synthase 5397801 5872645 PputGB1_4832 Pseudomonas putida GB-1 pseudouridine synthase YP_001671052.1 5397163 R 76869 CDS YP_001671053.1 167035822 5872646 complement(5397808..5399271) 1 NC_010322.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 5399271 5872646 PputGB1_4833 Pseudomonas putida GB-1 AMP nucleosidase YP_001671053.1 5397808 R 76869 CDS YP_001671054.1 167035823 5872647 complement(5399377..5401029) 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN4800 acyl-CoA dehydrogenase (AidB); acyl-CoA dehydrogenase domain-containing protein 5401029 5872647 PputGB1_4834 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001671054.1 5399377 R 76869 CDS YP_001671055.1 167035824 5872648 complement(5401156..5403144) 1 NC_010322.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4801 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 5403144 5872648 PputGB1_4835 Pseudomonas putida GB-1 integral membrane sensor signal transduction histidine kinase YP_001671055.1 5401156 R 76869 CDS YP_001671056.1 167035825 5872649 5403410..5404207 1 NC_010322.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5404207 5872649 PputGB1_4836 Pseudomonas putida GB-1 phosphomethylpyrimidine kinase YP_001671056.1 5403410 D 76869 CDS YP_001671057.1 167035826 5872650 5404221..5404844 1 NC_010322.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5404844 thiE 5872650 thiE Pseudomonas putida GB-1 thiamine-phosphate pyrophosphorylase YP_001671057.1 5404221 D 76869 CDS YP_001671058.1 167035827 5872651 5404861..5406144 1 NC_010322.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5406144 5872651 PputGB1_4838 Pseudomonas putida GB-1 glutamate-1-semialdehyde aminotransferase YP_001671058.1 5404861 D 76869 CDS YP_001671059.1 167035828 5872652 5406432..5406977 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4805 hypothetical protein; Sel1 domain-containing protein 5406977 5872652 PputGB1_4839 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001671059.1 5406432 D 76869 CDS YP_001671060.1 167035829 5872653 complement(5406981..5407349) 1 NC_010322.1 PFAM: Domain of unknown function DUF1820; KEGG: pmy:Pmen_3777 hypothetical protein; hypothetical protein 5407349 5872653 PputGB1_4840 Pseudomonas putida GB-1 hypothetical protein YP_001671060.1 5406981 R 76869 CDS YP_001671061.1 167035830 5872654 5407496..5408494 1 NC_010322.1 PFAM: PhoH family protein; KEGG: pen:PSEEN4807 phosphate starvation-inducible protein (PhoH-like); PhoH family protein 5408494 5872654 PputGB1_4841 Pseudomonas putida GB-1 PhoH family protein YP_001671061.1 5407496 D 76869 CDS YP_001671062.1 167035831 5872655 5408487..5408960 1 NC_010322.1 PFAM: protein of unknown function UPF0054; KEGG: pen:PSEEN4808 hypothetical protein; putative metalloprotease 5408960 5872655 PputGB1_4842 Pseudomonas putida GB-1 putative metalloprotease YP_001671062.1 5408487 D 76869 CDS YP_001671063.1 167035832 5872656 5408986..5409825 1 NC_010322.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: pen:PSEEN4809 magnesium and cobalt efflux protein CorC; hypothetical protein 5409825 5872656 PputGB1_4843 Pseudomonas putida GB-1 hypothetical protein YP_001671063.1 5408986 D 76869 CDS YP_001671064.1 167035833 5872657 5409834..5411351 1 NC_010322.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5411351 lnt 5872657 lnt Pseudomonas putida GB-1 apolipoprotein N-acyltransferase YP_001671064.1 5409834 D 76869 CDS YP_001671065.1 167035834 5872658 complement(5411478..5412239) 1 NC_010322.1 PFAM: protein of unknown function DUF218; KEGG: pen:PSEEN4811 hypothetical protein; hypothetical protein 5412239 5872658 PputGB1_4845 Pseudomonas putida GB-1 hypothetical protein YP_001671065.1 5411478 R 76869 CDS YP_001671066.1 167035835 5872659 complement(5412373..5412687) 1 NC_010322.1 KEGG: pen:PSEEN4812 hypothetical protein; hypothetical protein 5412687 5872659 PputGB1_4846 Pseudomonas putida GB-1 hypothetical protein YP_001671066.1 5412373 R 76869 CDS YP_001671067.1 167035836 5872660 5412916..5415522 1 NC_010322.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5415522 leuS 5872660 leuS Pseudomonas putida GB-1 leucyl-tRNA synthetase YP_001671067.1 5412916 D 76869 CDS YP_001671068.1 167035837 5872661 5415584..5416189 1 NC_010322.1 PFAM: Rare lipoprotein B; KEGG: pen:PSEEN4814 lipoprotein, rare lipoprotein B family; rare lipoprotein B 5416189 5872661 PputGB1_4848 Pseudomonas putida GB-1 rare lipoprotein B YP_001671068.1 5415584 D 76869 CDS YP_001671069.1 167035838 5872662 5416211..5417266 1 NC_010322.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5417266 holA 5872662 holA Pseudomonas putida GB-1 DNA polymerase III subunit delta YP_001671069.1 5416211 D 76869 CDS YP_001671070.1 167035839 5872663 5417375..5417539 1 NC_010322.1 PFAM: protein of unknown function DUF331; KEGG: pen:PSEEN4816 hypothetical protein; hypothetical protein 5417539 5872663 PputGB1_4850 Pseudomonas putida GB-1 hypothetical protein YP_001671070.1 5417375 D 76869 CDS YP_001671071.1 167035840 5872664 5417600..5418916 1 NC_010322.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pen:PSEEN4817 membrane-bound lytic murein transglycosylase; lytic murein transglycosylase 5418916 5872664 PputGB1_4851 Pseudomonas putida GB-1 lytic murein transglycosylase YP_001671071.1 5417600 D 76869 CDS YP_001671072.1 167035841 5872665 complement(5419007..5419945) 1 NC_010322.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pen:PSEEN4818 muramoyltetrapeptide carboxypeptidase; peptidase U61 LD-carboxypeptidase A 5419945 5872665 PputGB1_4852 Pseudomonas putida GB-1 peptidase U61 LD-carboxypeptidase A YP_001671072.1 5419007 R 76869 CDS YP_001671073.1 167035842 5872666 complement(5420033..5421049) 1 NC_010322.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 5421049 5872666 PputGB1_4853 Pseudomonas putida GB-1 lipoyl synthase YP_001671073.1 5420033 R 76869 CDS YP_001671074.1 167035843 5872667 complement(5421052..5421699) 1 NC_010322.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 5421699 lipB 5872667 lipB Pseudomonas putida GB-1 lipoate-protein ligase B YP_001671074.1 5421052 R 76869 CDS YP_001671075.1 167035844 5872668 complement(5421699..5421974) 1 NC_010322.1 PFAM: protein of unknown function DUF493; KEGG: pen:PSEEN4821 hypothetical protein; hypothetical protein 5421974 5872668 PputGB1_4855 Pseudomonas putida GB-1 hypothetical protein YP_001671075.1 5421699 R 76869 CDS YP_001671076.1 167035845 5872669 complement(5422048..5423208) 1 NC_010322.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pen:PSEEN4822 D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor); serine-type D-Ala-D-Ala carboxypeptidase 5423208 5872669 PputGB1_4856 Pseudomonas putida GB-1 serine-type D-Ala-D-Ala carboxypeptidase YP_001671076.1 5422048 R 76869 CDS YP_001671077.1 167035846 5872670 complement(5423431..5424432) 1 NC_010322.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pen:PSEEN4823 lipoprotein, rare lipoprotein A family; rare lipoprotein A 5424432 5872670 PputGB1_4857 Pseudomonas putida GB-1 rare lipoprotein A YP_001671077.1 5423431 R 76869 CDS YP_001671078.1 167035847 5872671 complement(5424432..5425442) 1 NC_010322.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pen:PSEEN4824 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B 5425442 5872671 PputGB1_4858 Pseudomonas putida GB-1 lytic murein transglycosylase B YP_001671078.1 5424432 R 76869 CDS YP_001671079.1 167035848 5872672 complement(5425460..5426602) 1 NC_010322.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pen:PSEEN4825 rod shape-determining protein; rod shape-determining protein RodA 5426602 5872672 PputGB1_4859 Pseudomonas putida GB-1 rod shape-determining protein RodA YP_001671079.1 5425460 R 76869 CDS YP_001671080.1 167035849 5872673 complement(5426602..5428491) 1 NC_010322.1 KEGG: pen:PSEEN4826 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 5428491 5872673 PputGB1_4860 Pseudomonas putida GB-1 penicillin-binding protein 2 YP_001671080.1 5426602 R 76869 CDS YP_001671081.1 167035850 5872674 complement(5428508..5428975) 1 NC_010322.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 5428975 5872674 PputGB1_4861 Pseudomonas putida GB-1 rRNA large subunit methyltransferase YP_001671081.1 5428508 R 76869 CDS YP_001671082.1 167035851 5872675 complement(5428986..5429405) 1 NC_010322.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pen:PSEEN4828 hypothetical protein; iojap family protein 5429405 5872675 PputGB1_4862 Pseudomonas putida GB-1 iojap family protein YP_001671082.1 5428986 R 76869 CDS YP_001671083.1 167035852 5872676 complement(5429449..5430108) 1 NC_010322.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 5430108 nadD 5872676 nadD Pseudomonas putida GB-1 nicotinic acid mononucleotide adenylyltransferase YP_001671083.1 5429449 R 76869 CDS YP_001671084.1 167035853 5872677 complement(5430110..5431381) 1 NC_010322.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 5431381 proA 5872677 proA Pseudomonas putida GB-1 gamma-glutamyl phosphate reductase YP_001671084.1 5430110 R 76869 CDS YP_001671085.1 167035854 5872678 5431676..5432344 1 NC_010322.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5432344 5872678 PputGB1_4865 Pseudomonas putida GB-1 3-methyladenine DNA glycosylase YP_001671085.1 5431676 D 76869 CDS YP_001671086.1 167035855 5872679 5432347..5433663 1 NC_010322.1 PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: pen:PSEEN4833 phosphatase, PAP2 family; phosphoesterase PA-phosphatase-like protein 5433663 5872679 PputGB1_4866 Pseudomonas putida GB-1 phosphoesterase PA-phosphatase-like protein YP_001671086.1 5432347 D 76869 CDS YP_001671087.1 167035856 5872680 complement(5433729..5434319) 1 NC_010322.1 PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN4834 ATP-dependent protease La domain protein; peptidase S16 lon domain-containing protein 5434319 5872680 PputGB1_4867 Pseudomonas putida GB-1 peptidase S16 lon domain-containing protein YP_001671087.1 5433729 R 76869 CDS YP_001671088.1 167035857 5872681 complement(5434329..5435045) 1 NC_010322.1 PFAM: LrgB family protein; KEGG: pen:PSEEN4835 hypothetical protein; LrgB family protein 5435045 5872681 PputGB1_4868 Pseudomonas putida GB-1 LrgB family protein YP_001671088.1 5434329 R 76869 CDS YP_001671089.1 167035858 5872682 complement(5435042..5435404) 1 NC_010322.1 PFAM: LrgA family protein; KEGG: pen:PSEEN4836 hypothetical protein; LrgA family protein 5435404 5872682 PputGB1_4869 Pseudomonas putida GB-1 LrgA family protein YP_001671089.1 5435042 R 76869 CDS YP_001671090.1 167035859 5872683 5435548..5436003 1 NC_010322.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN4838 MaoC-like dehydratase; dehydratase 5436003 5872683 PputGB1_4870 Pseudomonas putida GB-1 dehydratase YP_001671090.1 5435548 D 76869 CDS YP_001671091.1 167035860 5872684 5436205..5437083 1 NC_010322.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5437083 prmA 5872684 prmA Pseudomonas putida GB-1 50S ribosomal protein L11 methyltransferase YP_001671091.1 5436205 D 76869 CDS YP_001671092.1 167035861 5872685 5437126..5438493 1 NC_010322.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: pen:PSEEN4860 hypothetical protein; Zinc finger-domain-containing protein 5438493 5872685 PputGB1_4872 Pseudomonas putida GB-1 Zinc finger-domain-containing protein YP_001671092.1 5437126 D 76869 CDS YP_001671093.1 167035862 5872686 5438669..5439682 1 NC_010322.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN4861 dihydrouridine synthase TIM-barrel protein nifR3; NifR3 family TIM-barrel protein 5439682 5872686 PputGB1_4873 Pseudomonas putida GB-1 NifR3 family TIM-barrel protein YP_001671093.1 5438669 D 76869 CDS YP_001671094.1 167035863 5872687 5439679..5439999 1 NC_010322.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5439999 fis 5872687 fis Pseudomonas putida GB-1 DNA-binding protein Fis YP_001671094.1 5439679 D 76869 CDS YP_001671095.1 167035864 5872688 5440081..5441688 1 NC_010322.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5441688 purH 5872688 purH Pseudomonas putida GB-1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001671095.1 5440081 D 76869 CDS YP_001671096.1 167035865 5872689 5441858..5443153 1 NC_010322.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5443153 5872689 PputGB1_4876 Pseudomonas putida GB-1 phosphoribosylamine--glycine ligase YP_001671096.1 5441858 D 76869 CDS YP_001671097.1 167035866 5872690 5443289..5446060 1 NC_010322.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4865 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 5446060 5872690 PputGB1_4877 Pseudomonas putida GB-1 integral membrane sensor hybrid histidine kinase YP_001671097.1 5443289 D 76869 CDS YP_001671098.1 167035867 5872691 5446150..5446746 1 NC_010322.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pen:PSEEN4866 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein 5446746 5872691 PputGB1_4878 Pseudomonas putida GB-1 multiple antibiotic resistance (MarC)-like protein YP_001671098.1 5446150 D 76869 CDS YP_001671099.1 167035868 5872692 complement(5446743..5447366) 1 NC_010322.1 hypothetical protein 5447366 5872692 PputGB1_4879 Pseudomonas putida GB-1 hypothetical protein YP_001671099.1 5446743 R 76869 CDS YP_001671100.1 167035869 5872693 complement(5447359..5448051) 1 NC_010322.1 hypothetical protein 5448051 5872693 PputGB1_4880 Pseudomonas putida GB-1 hypothetical protein YP_001671100.1 5447359 R 76869 CDS YP_001671101.1 167035870 5872694 complement(5448111..5448791) 1 NC_010322.1 KEGG: pen:PSEEN4867 hypothetical protein; hypothetical protein 5448791 5872694 PputGB1_4881 Pseudomonas putida GB-1 hypothetical protein YP_001671101.1 5448111 R 76869 CDS YP_001671102.1 167035871 5872695 complement(5448885..5450567) 1 NC_010322.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pen:PSEEN4868 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase 5450567 5872695 PputGB1_4882 Pseudomonas putida GB-1 precorrin-3B C(17)-methyltransferase YP_001671102.1 5448885 R 76869 CDS YP_001671103.1 167035872 5872696 complement(5450570..5451301) 1 NC_010322.1 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase 5451301 5872696 PputGB1_4883 Pseudomonas putida GB-1 precorrin-2 C(20)-methyltransferase YP_001671103.1 5450570 R 76869 CDS YP_001671104.1 167035873 5872697 complement(5451301..5451927) 1 NC_010322.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 5451927 cobH 5872697 cobH Pseudomonas putida GB-1 precorrin-8X methylmutase YP_001671104.1 5451301 R 76869 CDS YP_001671105.1 167035874 5872698 complement(5451920..5453251) 1 NC_010322.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN4871 precorrin-3B synthase; precorrin-3B synthase 5453251 5872698 PputGB1_4885 Pseudomonas putida GB-1 precorrin-3B synthase YP_001671105.1 5451920 R 76869 CDS YP_001671106.1 167035875 5872699 5453397..5454608 1 NC_010322.1 KEGG: pen:PSEEN4872 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5454608 5872699 PputGB1_4886 Pseudomonas putida GB-1 precorrin-6y C5,15-methyltransferase subunit CbiE YP_001671106.1 5453397 D 76869 CDS YP_001671107.1 167035876 5872700 5454601..5455695 1 NC_010322.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5455695 cbiD 5872700 cbiD Pseudomonas putida GB-1 cobalt-precorrin-6A synthase YP_001671107.1 5454601 D 76869 CDS YP_001671108.1 167035877 5872701 5455692..5456411 1 NC_010322.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5456411 5872701 PputGB1_4888 Pseudomonas putida GB-1 cobalt-precorrin-6x reductase YP_001671108.1 5455692 D 76869 CDS YP_001671109.1 167035878 5872702 5456535..5456972 1 NC_010322.1 PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN4877 hypothetical protein; hypothetical protein 5456972 5872702 PputGB1_4889 Pseudomonas putida GB-1 hypothetical protein YP_001671109.1 5456535 D 76869 CDS YP_001671110.1 167035879 5872703 5457000..5457854 1 NC_010322.1 PFAM: band 7 protein; KEGG: pen:PSEEN4878 hypothetical protein; hypothetical protein 5457854 5872703 PputGB1_4890 Pseudomonas putida GB-1 hypothetical protein YP_001671110.1 5457000 D 76869 CDS YP_001671111.1 167035880 5872704 5458072..5458461 1 NC_010322.1 KEGG: pen:PSEEN4879 hypothetical protein; hypothetical protein 5458461 5872704 PputGB1_4891 Pseudomonas putida GB-1 hypothetical protein YP_001671111.1 5458072 D 76869 CDS YP_001671112.1 167035881 5872705 5458509..5458994 1 NC_010322.1 PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN4881 hypothetical protein; hypothetical protein 5458994 5872705 PputGB1_4892 Pseudomonas putida GB-1 hypothetical protein YP_001671112.1 5458509 D 76869 CDS YP_001671113.1 167035882 5872706 5459017..5459448 1 NC_010322.1 KEGG: pen:PSEEN4882 hypothetical protein; hypothetical protein 5459448 5872706 PputGB1_4893 Pseudomonas putida GB-1 hypothetical protein YP_001671113.1 5459017 D 76869 CDS YP_001671114.1 167035883 5872707 5459515..5461581 1 NC_010322.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN4883 outer membrane copper receptor OprC; TonB-dependent copper receptor 5461581 5872707 PputGB1_4894 Pseudomonas putida GB-1 TonB-dependent copper receptor YP_001671114.1 5459515 D 76869 CDS YP_001671115.1 167035884 5872708 5461640..5463007 1 NC_010322.1 PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4884 hypothetical protein; peptidase 5463007 5872708 PputGB1_4895 Pseudomonas putida GB-1 peptidase YP_001671115.1 5461640 D 76869 CDS YP_001671116.1 167035885 5872709 5463230..5464651 1 NC_010322.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5464651 5872709 PputGB1_4896 Pseudomonas putida GB-1 D-alanine/D-serine/glycine permease YP_001671116.1 5463230 D 76869 CDS YP_001671117.1 167035886 5872710 complement(5464699..5466042) 1 NC_010322.1 KEGG: pap:PSPA7_4058 probable carbohydrate binding domain; hypothetical protein 5466042 5872710 PputGB1_4897 Pseudomonas putida GB-1 hypothetical protein YP_001671117.1 5464699 R 76869 CDS YP_001671118.1 167035887 5872711 5466447..5467712 1 NC_010322.1 TIGRFAM: urea ABC transporter, urea binding protein; KEGG: pen:PSEEN4888 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea binding protein 5467712 5872711 PputGB1_4898 Pseudomonas putida GB-1 urea ABC transporter urea binding protein YP_001671118.1 5466447 D 76869 CDS YP_001671119.1 167035888 5872712 5467832..5469319 1 NC_010322.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4889 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtB 5469319 5872712 PputGB1_4899 Pseudomonas putida GB-1 urea ABC transporter permease UrtB YP_001671119.1 5467832 D 76869 CDS YP_001671120.1 167035889 5872713 5469319..5470398 1 NC_010322.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4890 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtC 5470398 5872713 PputGB1_4900 Pseudomonas putida GB-1 urea ABC transporter permease UrtC YP_001671120.1 5469319 D 76869 CDS YP_001671121.1 167035890 5872714 5470395..5471252 1 NC_010322.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pen:PSEEN4891 branched-chain amino acid transport ABC transporter, ATP-binding component; urea ABC transporter ATP-binding protein UrtD 5471252 5872714 PputGB1_4901 Pseudomonas putida GB-1 urea ABC transporter ATP-binding protein UrtD YP_001671121.1 5470395 D 76869 CDS YP_001671122.1 167035891 5872715 5471270..5471968 1 NC_010322.1 KEGG: pen:PSEEN4892 branched-chain amino acid ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 5471968 5872715 PputGB1_4902 Pseudomonas putida GB-1 urea ABC transporter ATP-binding protein UrtE YP_001671122.1 5471270 D 76869 CDS YP_001671123.1 167035892 5872716 5472000..5472515 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4893 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5472515 5872716 PputGB1_4903 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001671123.1 5472000 D 76869 CDS YP_001671124.1 167035893 5872717 complement(5472584..5472889) 1 NC_010322.1 KEGG: pen:PSEEN4895 hypothetical protein; hypothetical protein 5472889 5872717 PputGB1_4904 Pseudomonas putida GB-1 hypothetical protein YP_001671124.1 5472584 R 76869 CDS YP_001671125.1 167035894 5872718 complement(5472892..5473848) 1 NC_010322.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein; chaperone DnaJ domain-containing protein 5473848 5872718 PputGB1_4905 Pseudomonas putida GB-1 chaperone DnaJ domain-containing protein YP_001671125.1 5472892 R 76869 CDS YP_001671126.1 167035895 5872719 5474013..5475284 1 NC_010322.1 KEGG: pen:PSEEN4897 heat-shock protein, HSP70 family; HSP70 family protein 5475284 5872719 PputGB1_4906 Pseudomonas putida GB-1 HSP70 family protein YP_001671126.1 5474013 D 76869 CDS YP_001671127.1 167035896 5872720 complement(5475321..5476328) 1 NC_010322.1 KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein 5476328 5872720 PputGB1_4907 Pseudomonas putida GB-1 hypothetical protein YP_001671127.1 5475321 R 76869 CDS YP_001671128.1 167035897 5872721 complement(5476399..5476686) 1 NC_010322.1 PFAM: PsiF repeat protein; KEGG: pen:PSEEN4899 protein induced by phosphate starvation; PsiF repeat-containing protein 5476686 5872721 PputGB1_4908 Pseudomonas putida GB-1 PsiF repeat-containing protein YP_001671128.1 5476399 R 76869 CDS YP_001671129.1 167035898 5872722 complement(5476750..5477538) 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN4900 transcriptional regulator, AraC family; AraC family transcriptional regulator 5477538 5872722 PputGB1_4909 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001671129.1 5476750 R 76869 CDS YP_001671130.1 167035899 5872723 5477701..5478573 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein; hypothetical protein 5478573 5872723 PputGB1_4910 Pseudomonas putida GB-1 hypothetical protein YP_001671130.1 5477701 D 76869 CDS YP_001671131.1 167035900 5872724 complement(5478570..5479460) 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4903 triacylglycerol lipase; alpha/beta hydrolase fold family protein 5479460 5872724 PputGB1_4911 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001671131.1 5478570 R 76869 CDS YP_001671132.1 167035901 5872725 5479583..5479924 1 NC_010322.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5479924 5872725 PputGB1_4912 Pseudomonas putida GB-1 DNA-binding transcriptional activator OsmE YP_001671132.1 5479583 D 76869 CDS YP_001671133.1 167035902 5872726 5479961..5480491 1 NC_010322.1 PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: pen:PSEEN4905 bacterioferritin; ferritin Dps family protein 5480491 5872726 PputGB1_4913 Pseudomonas putida GB-1 ferritin Dps family protein YP_001671133.1 5479961 D 76869 CDS YP_001671134.1 167035903 5872727 complement(5480603..5482669) 1 NC_010322.1 PFAM: AsmA family protein; KEGG: pen:PSEEN4906 hypothetical protein; AsmA family protein 5482669 5872727 PputGB1_4914 Pseudomonas putida GB-1 AsmA family protein YP_001671134.1 5480603 R 76869 CDS YP_001671135.1 167035904 5872728 5483011..5483508 1 NC_010322.1 KEGG: pen:PSEEN4907 hypothetical protein; hypothetical protein 5483508 5872728 PputGB1_4915 Pseudomonas putida GB-1 hypothetical protein YP_001671135.1 5483011 D 76869 CDS YP_001671136.1 167035905 5872729 5483631..5484266 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN4908 transcriptional regulator, TetR family; TetR family transcriptional regulator 5484266 5872729 PputGB1_4916 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001671136.1 5483631 D 76869 CDS YP_001671137.1 167035906 5872730 5484277..5485407 1 NC_010322.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4909 mannose-6-phosphate isomerase; N-acylglucosamine 2-epimerase 5485407 5872730 PputGB1_4917 Pseudomonas putida GB-1 N-acylglucosamine 2-epimerase YP_001671137.1 5484277 D 76869 CDS YP_001671138.1 167035907 5872731 complement(5485535..5486302) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5486302 5872731 PputGB1_4918 Pseudomonas putida GB-1 short-chain dehydrogenase/reductase SDR YP_001671138.1 5485535 R 76869 CDS YP_001671139.1 167035908 5872732 complement(5486897..5487613) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4913 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5487613 5872732 PputGB1_4919 Pseudomonas putida GB-1 ABC transporter-like protein YP_001671139.1 5486897 R 76869 CDS YP_001671140.1 167035909 5872733 complement(5487610..5488485) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4914 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5488485 5872733 PputGB1_4920 Pseudomonas putida GB-1 ABC transporter-like protein YP_001671140.1 5487610 R 76869 CDS YP_001671141.1 167035910 5872734 complement(5488482..5489783) 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN4915 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 5489783 5872734 PputGB1_4921 Pseudomonas putida GB-1 inner-membrane translocator YP_001671141.1 5488482 R 76869 CDS YP_001671142.1 167035911 5872735 complement(5489789..5490703) 1 NC_010322.1 PFAM: inner-membrane translocator; KEGG: pfo:Pfl_0553 inner-membrane translocator; inner-membrane translocator 5490703 5872735 PputGB1_4922 Pseudomonas putida GB-1 inner-membrane translocator YP_001671142.1 5489789 R 76869 CDS YP_001671143.1 167035912 5872736 complement(5490858..5491994) 1 NC_010322.1 PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN4917 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 5491994 5872736 PputGB1_4923 Pseudomonas putida GB-1 extracellular ligand-binding receptor YP_001671143.1 5490858 R 76869 CDS YP_001671144.1 167035913 5872737 5492443..5493648 1 NC_010322.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5493648 5872737 PputGB1_4924 Pseudomonas putida GB-1 nicotinate phosphoribosyltransferase YP_001671144.1 5492443 D 76869 CDS YP_001671145.1 167035914 5872738 5493652..5494479 1 NC_010322.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5494479 nadE 5872738 nadE Pseudomonas putida GB-1 NAD synthetase YP_001671145.1 5493652 D 76869 CDS YP_001671146.1 167035915 5872739 complement(5494594..5495046) 1 NC_010322.1 TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN4921 azurin; azurin 5495046 5872739 PputGB1_4926 Pseudomonas putida GB-1 azurin YP_001671146.1 5494594 R 76869 CDS YP_001671147.1 167035916 5872740 5495393..5495980 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4924 hypothetical protein; hypothetical protein 5495980 5872740 PputGB1_4927 Pseudomonas putida GB-1 hypothetical protein YP_001671147.1 5495393 D 76869 CDS YP_001671148.1 167035917 5872741 complement(5496024..5498234) 1 NC_010322.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN4925 Fe-S oxidase, SAM-binding; hypothetical protein 5498234 5872741 PputGB1_4928 Pseudomonas putida GB-1 hypothetical protein YP_001671148.1 5496024 R 76869 CDS YP_001671149.1 167035918 5872742 5498801..5499739 1 NC_010322.1 KEGG: psp:PSPPH_0325 hypothetical protein; hypothetical protein 5499739 5872742 PputGB1_4929 Pseudomonas putida GB-1 hypothetical protein YP_001671149.1 5498801 D 76869 CDS YP_001671150.1 167035919 5872743 complement(5499782..5501179) 1 NC_010322.1 unwinds double stranded DNA; replicative DNA helicase 5501179 5872743 PputGB1_4930 Pseudomonas putida GB-1 replicative DNA helicase YP_001671150.1 5499782 R 76869 CDS YP_001671151.1 167035920 5872744 complement(5501293..5501739) 1 NC_010322.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 5501739 rplI 5872744 rplI Pseudomonas putida GB-1 50S ribosomal protein L9 YP_001671151.1 5501293 R 76869 CDS YP_001671152.1 167035921 5872745 complement(5501760..5502623) 1 NC_010322.1 KEGG: pen:PSEEN4928 hypothetical protein; hypothetical protein 5502623 5872745 PputGB1_4932 Pseudomonas putida GB-1 hypothetical protein YP_001671152.1 5501760 R 76869 CDS YP_001671153.1 167035922 5872746 complement(5502657..5502887) 1 NC_010322.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 5502887 rpsR 5872746 rpsR Pseudomonas putida GB-1 30S ribosomal protein S18 YP_001671153.1 5502657 R 76869 CDS YP_001671154.1 167035923 5872747 complement(5502916..5503341) 1 NC_010322.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 5503341 rpsF 5872747 rpsF Pseudomonas putida GB-1 30S ribosomal protein S6 YP_001671154.1 5502916 R 76869 CDS YP_001671155.1 167035924 5872748 complement(5503627..5504373) 1 NC_010322.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pen:PSEEN4932 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 5504373 5872748 PputGB1_4935 Pseudomonas putida GB-1 RNA methyltransferase YP_001671155.1 5503627 R 76869 CDS YP_001671156.1 167035925 5872749 complement(5504370..5506943) 1 NC_010322.1 KEGG: pen:PSEEN4933 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 5506943 5872749 PputGB1_4936 Pseudomonas putida GB-1 ribonuclease R YP_001671156.1 5504370 R 76869 CDS YP_001671157.1 167035926 5872752 5507677..5508690 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4935 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5508690 5872752 PputGB1_4937 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671157.1 5507677 D 76869 CDS YP_001671158.1 167035927 5872753 5508690..5510255 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4936 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5510255 5872753 PputGB1_4938 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001671158.1 5508690 D 76869 CDS YP_001671159.1 167035928 5872754 complement(5510306..5510776) 1 NC_010322.1 KEGG: kla:KLLA0F24948g unnamed protein product; hypothetical protein 5510776 5872754 PputGB1_4939 Pseudomonas putida GB-1 hypothetical protein YP_001671159.1 5510306 R 76869 CDS YP_001671160.1 167035929 5872755 complement(5510866..5512800) 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4937 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5512800 5872755 PputGB1_4940 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001671160.1 5510866 R 76869 CDS YP_001671161.1 167035930 5872756 complement(5512987..5514279) 1 NC_010322.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 5514279 5872756 PputGB1_4941 Pseudomonas putida GB-1 adenylosuccinate synthetase YP_001671161.1 5512987 R 76869 CDS YP_001671162.1 167035931 5872757 complement(5514336..5515523) 1 NC_010322.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 5515523 hisZ 5872757 hisZ Pseudomonas putida GB-1 ATP phosphoribosyltransferase regulatory subunit YP_001671162.1 5514336 R 76869 CDS YP_001671163.1 167035932 5872758 complement(5515825..5516694) 1 NC_010322.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pen:PSEEN4940 HflC protein; HflC protein 5516694 5872758 PputGB1_4943 Pseudomonas putida GB-1 HflC protein YP_001671163.1 5515825 R 76869 CDS YP_001671164.1 167035933 5872759 complement(5516694..5517875) 1 NC_010322.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pen:PSEEN4941 HflK protein; HflK protein 5517875 5872759 PputGB1_4944 Pseudomonas putida GB-1 HflK protein YP_001671164.1 5516694 R 76869 CDS YP_001671165.1 167035934 5872760 complement(5517972..5519273) 1 NC_010322.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN4942 hypothetical protein; GTP-binding proten HflX 5519273 5872760 PputGB1_4945 Pseudomonas putida GB-1 GTP-binding proten HflX YP_001671165.1 5517972 R 76869 CDS YP_001671166.1 167035935 5872761 complement(5519286..5519546) 1 NC_010322.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 5519546 hfq 5872761 hfq Pseudomonas putida GB-1 RNA-binding protein Hfq YP_001671166.1 5519286 R 76869 CDS YP_001671167.1 167035936 5872762 complement(5519641..5520612) 1 NC_010322.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 5520612 miaA 5872762 miaA Pseudomonas putida GB-1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001671167.1 5519641 R 76869 CDS YP_001671168.1 167035937 5872763 complement(5520614..5522512) 1 NC_010322.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 5522512 mutL 5872763 mutL Pseudomonas putida GB-1 DNA mismatch repair protein YP_001671168.1 5520614 R 76869 CDS YP_001671169.1 167035938 5872764 complement(5522512..5523942) 1 NC_010322.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: pen:PSEEN4946 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 5523942 5872764 PputGB1_4949 Pseudomonas putida GB-1 N-acetylmuramoyl-L-alanine amidase YP_001671169.1 5522512 R 76869 CDS YP_001671170.1 167035939 5872765 complement(5523954..5524427) 1 NC_010322.1 PFAM: protein of unknown function UPF0079; KEGG: pen:PSEEN4947 hypothetical protein; hypothetical protein 5524427 5872765 PputGB1_4950 Pseudomonas putida GB-1 hypothetical protein YP_001671170.1 5523954 R 76869 CDS YP_001671171.1 167035940 5872766 complement(5524415..5525338) 1 NC_010322.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: pen:PSEEN4948 hypothetical protein; carbohydrate kinase 5525338 5872766 PputGB1_4951 Pseudomonas putida GB-1 carbohydrate kinase YP_001671171.1 5524415 R 76869 CDS YP_001671172.1 167035941 5872767 5525341..5526405 1 NC_010322.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pen:PSEEN4949 iron-sulfur cluster-binding protein; iron-sulfur cluster binding protein 5526405 5872767 PputGB1_4952 Pseudomonas putida GB-1 iron-sulfur cluster binding protein YP_001671172.1 5525341 D 76869 CDS YP_001671173.1 167035942 5872768 complement(5526431..5527042) 1 NC_010322.1 PFAM: protein of unknown function UPF0126; KEGG: pen:PSEEN4953 hypothetical protein; hypothetical protein 5527042 5872768 PputGB1_4953 Pseudomonas putida GB-1 hypothetical protein YP_001671173.1 5526431 R 76869 CDS YP_001671174.1 167035943 5872769 complement(5527134..5527676) 1 NC_010322.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 5527676 5872769 PputGB1_4954 Pseudomonas putida GB-1 oligoribonuclease YP_001671174.1 5527134 R 76869 CDS YP_001671175.1 167035944 5872770 5527829..5528860 1 NC_010322.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5528860 5872770 PputGB1_4955 Pseudomonas putida GB-1 ribosome-associated GTPase YP_001671175.1 5527829 D 76869 CDS YP_001671176.1 167035945 5872771 5528995..5529474 1 NC_010322.1 KEGG: pen:PSEEN4956 hypothetical protein; hypothetical protein 5529474 5872771 PputGB1_4956 Pseudomonas putida GB-1 hypothetical protein YP_001671176.1 5528995 D 76869 CDS YP_001671177.1 167035946 5872772 complement(5529564..5530616) 1 NC_010322.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 5530616 motB 5872772 motB Pseudomonas putida GB-1 flagellar motor protein MotB YP_001671177.1 5529564 R 76869 CDS YP_001671178.1 167035947 5872773 complement(5530620..5531471) 1 NC_010322.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 5531471 5872773 PputGB1_4958 Pseudomonas putida GB-1 flagellar motor protein MotA YP_001671178.1 5530620 R 76869 CDS YP_001671179.1 167035948 5872774 5531602..5533137 1 NC_010322.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4959 hypothetical protein; metal-dependent hydrolase HDOD 5533137 5872774 PputGB1_4959 Pseudomonas putida GB-1 metal-dependent hydrolase HDOD YP_001671179.1 5531602 D 76869 CDS YP_001671180.1 167035949 5872775 5533182..5533991 1 NC_010322.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN4960 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 5533991 5872775 PputGB1_4960 Pseudomonas putida GB-1 rhodanese domain-containing protein YP_001671180.1 5533182 D 76869 CDS YP_001671181.1 167035950 5872776 5534001..5534864 1 NC_010322.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5534864 psd 5872776 psd Pseudomonas putida GB-1 phosphatidylserine decarboxylase YP_001671181.1 5534001 D 76869 CDS YP_001671182.1 167035951 5872777 complement(5534973..5536187) 1 NC_010322.1 KEGG: pen:PSEEN4962 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 5536187 5872777 PputGB1_4962 Pseudomonas putida GB-1 phosphoserine phosphatase SerB YP_001671182.1 5534973 R 76869 CDS YP_001671183.1 167035952 5872778 5536364..5537782 1 NC_010322.1 KEGG: pen:PSEEN4963 hypothetical protein; hypothetical protein 5537782 5872778 PputGB1_4963 Pseudomonas putida GB-1 hypothetical protein YP_001671183.1 5536364 D 76869 CDS YP_001671184.1 167035953 5872779 complement(5537861..5538505) 1 NC_010322.1 PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN4964 hypothetical protein; hypothetical protein 5538505 5872779 PputGB1_4964 Pseudomonas putida GB-1 hypothetical protein YP_001671184.1 5537861 R 76869 CDS YP_001671185.1 167035954 5872780 complement(5538744..5541002) 1 NC_010322.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 5541002 5872780 PputGB1_4965 Pseudomonas putida GB-1 DNA topoisomerase IV subunit A YP_001671185.1 5538744 R 76869 CDS YP_001671186.1 167035955 5872781 complement(5541013..5541531) 1 NC_010322.1 KEGG: pen:PSEEN4967 hypothetical protein; hypothetical protein 5541531 5872781 PputGB1_4966 Pseudomonas putida GB-1 hypothetical protein YP_001671186.1 5541013 R 76869 CDS YP_001671187.1 167035956 5872782 complement(5541528..5542514) 1 NC_010322.1 KEGG: pen:PSEEN4968 hypothetical protein; hypothetical protein 5542514 5872782 PputGB1_4967 Pseudomonas putida GB-1 hypothetical protein YP_001671187.1 5541528 R 76869 CDS YP_001671188.1 167035957 5872783 complement(5542511..5544415) 1 NC_010322.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 5544415 5872783 PputGB1_4968 Pseudomonas putida GB-1 DNA topoisomerase IV subunit B YP_001671188.1 5542511 R 76869 CDS YP_001671189.1 167035958 5872784 complement(5544450..5545058) 1 NC_010322.1 PFAM: protein of unknown function UPF0227; KEGG: pen:PSEEN4970 hypothetical protein; hypothetical protein 5545058 5872784 PputGB1_4969 Pseudomonas putida GB-1 hypothetical protein YP_001671189.1 5544450 R 76869 CDS YP_001671190.1 167035959 5872785 complement(5545169..5545969) 1 NC_010322.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: pen:PSEEN4971 metallo-phosphoesterase; calcineurin phosphoesterase domain-containing protein 5545969 5872785 PputGB1_4970 Pseudomonas putida GB-1 calcineurin phosphoesterase domain-containing protein YP_001671190.1 5545169 R 76869 CDS YP_001671191.1 167035960 5872786 complement(5546055..5546501) 1 NC_010322.1 PFAM: protein of unknown function DUF1249; KEGG: pen:PSEEN4972 hypothetical protein; hypothetical protein 5546501 5872786 PputGB1_4971 Pseudomonas putida GB-1 hypothetical protein YP_001671191.1 5546055 R 76869 CDS YP_001671192.1 167035961 5872787 complement(5546498..5547115) 1 NC_010322.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4973 hydrolase, MutT/NUDIX family; NUDIX hydrolase 5547115 5872787 PputGB1_4972 Pseudomonas putida GB-1 NUDIX hydrolase YP_001671192.1 5546498 R 76869 CDS YP_001671193.1 167035962 5872788 5547301..5548047 1 NC_010322.1 KEGG: pen:PSEEN4975 lipoprotein; lipoprotein 5548047 5872788 PputGB1_4973 Pseudomonas putida GB-1 lipoprotein YP_001671193.1 5547301 D 76869 CDS YP_001671194.1 167035963 5872789 complement(5548016..5549299) 1 NC_010322.1 TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN4976 transporter, NCS1 nucleoside transporter family; hydroxymethylpyrimidine transporter CytX 5549299 5872789 PputGB1_4974 Pseudomonas putida GB-1 hydroxymethylpyrimidine transporter CytX YP_001671194.1 5548016 R 76869 CDS YP_001671195.1 167035964 5872790 complement(5549465..5551345) 1 NC_010322.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 5551345 5872790 PputGB1_4975 Pseudomonas putida GB-1 thiamine biosynthesis protein ThiC YP_001671195.1 5549465 R 76869 CDS YP_001671196.1 167035965 5872791 5551768..5553204 1 NC_010322.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4979 type I efflux secretion system outer membrane protein, TolC; TolC family type I secretion outer membrane protein 5553204 5872791 PputGB1_4976 Pseudomonas putida GB-1 TolC family type I secretion outer membrane protein YP_001671196.1 5551768 D 76869 CDS YP_001671197.1 167035966 5872792 complement(5553295..5554566) 1 NC_010322.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 5554566 5872792 PputGB1_4977 Pseudomonas putida GB-1 3-deoxy-D-manno-octulosonic-acid transferase YP_001671197.1 5553295 R 76869 CDS YP_001671198.1 167035967 5872793 complement(5554578..5555471) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4981 transcriptional regulator, LysR family; LysR family transcriptional regulator 5555471 5872793 PputGB1_4978 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671198.1 5554578 R 76869 CDS YP_001671199.1 167035968 5872794 5555556..5555888 1 NC_010322.1 PFAM: small multidrug resistance protein; KEGG: pen:PSEEN4982 multidrug efflux SMR transporter; small multidrug resistance protein 5555888 5872794 PputGB1_4979 Pseudomonas putida GB-1 small multidrug resistance protein YP_001671199.1 5555556 D 76869 CDS YP_001671200.1 167035969 5872795 5555967..5557142 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4983 oxidase, FAD-binding; FAD dependent oxidoreductase 5557142 5872795 PputGB1_4980 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001671200.1 5555967 D 76869 CDS YP_001671201.1 167035970 5872796 5557139..5557951 1 NC_010322.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN4984 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 5557951 5872796 PputGB1_4981 Pseudomonas putida GB-1 aldo/keto reductase YP_001671201.1 5557139 D 76869 CDS YP_001671202.1 167035971 5872797 5558004..5558972 1 NC_010322.1 KEGG: pen:PSEEN4985 hypothetical protein; hypothetical protein 5558972 5872797 PputGB1_4982 Pseudomonas putida GB-1 hypothetical protein YP_001671202.1 5558004 D 76869 CDS YP_001671203.1 167035972 5872798 complement(5559003..5560424) 1 NC_010322.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 5560424 5872798 PputGB1_4983 Pseudomonas putida GB-1 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001671203.1 5559003 R 76869 CDS YP_001671204.1 167035973 5872799 complement(5560555..5562363) 1 NC_010322.1 KEGG: pen:PSEEN4987 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 5562363 5872799 PputGB1_4984 Pseudomonas putida GB-1 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_001671204.1 5560555 R 76869 CDS YP_001671205.1 167035974 5872800 complement(5562379..5563554) 1 NC_010322.1 PFAM: O-antigen polymerase; KEGG: pen:PSEEN4988 lipopolysaccharide core biosynthesis protein; O-antigen polymerase 5563554 5872800 PputGB1_4985 Pseudomonas putida GB-1 O-antigen polymerase YP_001671205.1 5562379 R 76869 CDS YP_001671206.1 167035975 5872801 5563655..5564260 1 NC_010322.1 KEGG: pen:PSEEN4989 toluene tolerance protein Ttg8; toluene tolerance protein Ttg8 5564260 5872801 PputGB1_4986 Pseudomonas putida GB-1 toluene tolerance protein Ttg8 YP_001671206.1 5563655 D 76869 CDS YP_001671207.1 167035976 5872802 complement(5564264..5565355) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4990 glycosyl transferase; glycosyl transferase group 1 protein 5565355 5872802 PputGB1_4987 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001671207.1 5564264 R 76869 CDS YP_001671208.1 167035977 5872803 complement(5565393..5566166) 1 NC_010322.1 KEGG: pen:PSEEN4991 hypothetical protein; hypothetical protein 5566166 5872803 PputGB1_4988 Pseudomonas putida GB-1 hypothetical protein YP_001671208.1 5565393 R 76869 CDS YP_001671209.1 167035978 5872804 complement(5566232..5567188) 1 NC_010322.1 KEGG: pen:PSEEN4992 hypothetical protein; hypothetical protein 5567188 5872804 PputGB1_4989 Pseudomonas putida GB-1 hypothetical protein YP_001671209.1 5566232 R 76869 CDS YP_001671210.1 167035979 5872805 complement(5567237..5568640) 1 NC_010322.1 PFAM: LmbE family protein; KEGG: pen:PSEEN4993 hypothetical protein; LmbE family protein 5568640 5872805 PputGB1_4990 Pseudomonas putida GB-1 LmbE family protein YP_001671210.1 5567237 R 76869 CDS YP_001671211.1 167035980 5872806 complement(5568637..5569533) 1 NC_010322.1 PFAM: Mig-14 family protein; KEGG: pen:PSEEN4994 hypothetical protein; Mig-14 family protein 5569533 5872806 PputGB1_4991 Pseudomonas putida GB-1 Mig-14 family protein YP_001671211.1 5568637 R 76869 CDS YP_001671212.1 167035981 5872807 complement(5569533..5570663) 1 NC_010322.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4995 glycosyl transferase; glycosyl transferase group 1 protein 5570663 5872807 PputGB1_4992 Pseudomonas putida GB-1 glycosyl transferase group 1 protein YP_001671212.1 5569533 R 76869 CDS YP_001671213.1 167035982 5872808 complement(5570647..5572404) 1 NC_010322.1 PFAM: Carbamoyltransferase; KEGG: pen:PSEEN4996 carbamoyltransferase, NodU family; carbamoyltransferase 5572404 5872808 PputGB1_4993 Pseudomonas putida GB-1 carbamoyltransferase YP_001671213.1 5570647 R 76869 CDS YP_001671214.1 167035983 5872809 complement(5572512..5573348) 1 NC_010322.1 PFAM: protein of unknown function DUF519; KEGG: pen:PSEEN4997 hypothetical protein; hypothetical protein 5573348 5872809 PputGB1_4994 Pseudomonas putida GB-1 hypothetical protein YP_001671214.1 5572512 R 76869 CDS YP_001671215.1 167035984 5872810 complement(5573455..5574933) 1 NC_010322.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pen:PSEEN4998 major sodium:proline symporter (SSS family); sodium/proline symporter 5574933 5872810 PputGB1_4995 Pseudomonas putida GB-1 sodium/proline symporter YP_001671215.1 5573455 R 76869 CDS YP_001671216.1 167035985 5872811 5575291..5579244 1 NC_010322.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5579244 putA 5872811 putA Pseudomonas putida GB-1 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001671216.1 5575291 D 76869 CDS YP_001671217.1 167035986 5872812 5579747..5581549 1 NC_010322.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5581549 5872812 PputGB1_4997 Pseudomonas putida GB-1 acyl-CoA dehydrogenase domain-containing protein YP_001671217.1 5579747 D 76869 CDS YP_001671218.1 167035987 5872813 5581581..5583023 1 NC_010322.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN5005 peptidase, TldD/PmbA family; peptidase U62 modulator of DNA gyrase 5583023 5872813 PputGB1_4998 Pseudomonas putida GB-1 peptidase U62 modulator of DNA gyrase YP_001671218.1 5581581 D 76869 CDS YP_001671219.1 167035988 5872814 5583023..5584342 1 NC_010322.1 KEGG: pen:PSEEN5006 hypothetical protein; hypothetical protein 5584342 5872814 PputGB1_4999 Pseudomonas putida GB-1 hypothetical protein YP_001671219.1 5583023 D 76869 CDS YP_001671220.1 167035989 5872815 5584470..5585897 1 NC_010322.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5007 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 5585897 5872815 PputGB1_5000 Pseudomonas putida GB-1 EmrB/QacA family drug resistance transporter YP_001671220.1 5584470 D 76869 CDS YP_001671221.1 167035990 5872816 5585962..5587347 1 NC_010322.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5587347 5872816 PputGB1_5001 Pseudomonas putida GB-1 ATP-dependent RNA helicase DbpA YP_001671221.1 5585962 D 76869 CDS YP_001671222.1 167035991 5872817 5587476..5588657 1 NC_010322.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5009 hypothetical protein; hypothetical protein 5588657 5872817 PputGB1_5002 Pseudomonas putida GB-1 hypothetical protein YP_001671222.1 5587476 D 76869 CDS YP_001671223.1 167035992 5872818 5588741..5590924 1 NC_010322.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pen:PSEEN5010 hypothetical protein; YccS/YhfK family integral membrane protein 5590924 5872818 PputGB1_5003 Pseudomonas putida GB-1 YccS/YhfK family integral membrane protein YP_001671223.1 5588741 D 76869 CDS YP_001671224.1 167035993 5872819 complement(5590958..5591695) 1 NC_010322.1 KEGG: pen:PSEEN5011 amino acid ABC transporter, periplasmic amino acid-binding protein; amino acid ABC transporter periplasmic amino acid-binding protein 5591695 5872819 PputGB1_5004 Pseudomonas putida GB-1 amino acid ABC transporter periplasmic amino acid-binding protein YP_001671224.1 5590958 R 76869 CDS YP_001671225.1 167035994 5872820 5591849..5592301 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_5776 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5592301 5872820 PputGB1_5005 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001671225.1 5591849 D 76869 CDS YP_001671226.1 167035995 5872821 complement(5592373..5592669) 1 NC_010322.1 KEGG: pen:PSEEN5015 hypothetical protein; hypothetical protein 5592669 5872821 PputGB1_5006 Pseudomonas putida GB-1 hypothetical protein YP_001671226.1 5592373 R 76869 CDS YP_001671227.1 167035996 5872822 complement(5592682..5593221) 1 NC_010322.1 PFAM: protein of unknown function DUF45; KEGG: pen:PSEEN5016 hypothetical protein; hypothetical protein 5593221 5872822 PputGB1_5007 Pseudomonas putida GB-1 hypothetical protein YP_001671227.1 5592682 R 76869 CDS YP_001671228.1 167035997 5872823 complement(5593222..5595348) 1 NC_010322.1 KEGG: pen:PSEEN5017 sensory box protein/response regulator (hybrid); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5595348 5872823 PputGB1_5008 Pseudomonas putida GB-1 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001671228.1 5593222 R 76869 CDS YP_001671229.1 167035998 5872824 complement(5595561..5596625) 1 NC_010322.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 5596625 5872824 PputGB1_5009 Pseudomonas putida GB-1 fructose-1,6-bisphosphate aldolase YP_001671229.1 5595561 R 76869 CDS YP_001671230.1 167035999 5872825 complement(5596726..5597055) 1 NC_010322.1 KEGG: pen:PSEEN5020 lipoprotein; lipoprotein 5597055 5872825 PputGB1_5010 Pseudomonas putida GB-1 lipoprotein YP_001671230.1 5596726 R 76869 CDS YP_001671231.1 167036000 5872826 complement(5597119..5597337) 1 NC_010322.1 KEGG: pen:PSEEN5021 hypothetical protein; hypothetical protein 5597337 5872826 PputGB1_5011 Pseudomonas putida GB-1 hypothetical protein YP_001671231.1 5597119 R 76869 CDS YP_001671232.1 167036001 5872827 complement(5597370..5598533) 1 NC_010322.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 5598533 pgk 5872827 pgk Pseudomonas putida GB-1 phosphoglycerate kinase YP_001671232.1 5597370 R 76869 CDS YP_001671233.1 167036002 5872828 complement(5598546..5599607) 1 NC_010322.1 KEGG: pen:PSEEN5023 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 5599607 5872828 PputGB1_5013 Pseudomonas putida GB-1 D-erythrose-4-phosphate dehydrogenase YP_001671233.1 5598546 R 76869 CDS YP_001671234.1 167036003 5872829 complement(5599798..5601795) 1 NC_010322.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 5601795 5872829 PputGB1_5014 Pseudomonas putida GB-1 transketolase YP_001671234.1 5599798 R 76869 CDS YP_001671235.1 167036004 5872830 5602025..5603017 1 NC_010322.1 PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5025 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 5603017 5872830 PputGB1_5015 Pseudomonas putida GB-1 ArsR family transcriptional regulator YP_001671235.1 5602025 D 76869 CDS YP_001671236.1 167036005 5872831 5603036..5604226 1 NC_010322.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5604226 5872831 PputGB1_5016 Pseudomonas putida GB-1 S-adenosylmethionine synthetase YP_001671236.1 5603036 D 76869 CDS YP_001671237.1 167036006 5872832 5604372..5606072 1 NC_010322.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5606072 ligB 5872832 ligB Pseudomonas putida GB-1 NAD-dependent DNA ligase LigB YP_001671237.1 5604372 D 76869 CDS YP_001671238.1 167036007 5872833 5606204..5606596 1 NC_010322.1 PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein 5606596 5872833 PputGB1_5018 Pseudomonas putida GB-1 hypothetical protein YP_001671238.1 5606204 D 76869 CDS YP_001671239.1 167036008 5872834 complement(5606667..5607125) 1 NC_010322.1 KEGG: pen:PSEEN5029 cytochrome c'; cytochrome c' 5607125 5872834 PputGB1_5019 Pseudomonas putida GB-1 cytochrome c' YP_001671239.1 5606667 R 76869 CDS YP_001671240.1 167036009 5872835 5607245..5608396 1 NC_010322.1 PFAM: MltA domain protein; 3D domain protein; KEGG: pen:PSEEN5030 outer membrane-bound lytic murein transglycolase A; MltA domain-containing protein 5608396 5872835 PputGB1_5020 Pseudomonas putida GB-1 MltA domain-containing protein YP_001671240.1 5607245 D 76869 CDS YP_001671241.1 167036010 5872836 complement(5608447..5608833) 1 NC_010322.1 KEGG: pen:PSEEN5031 hypothetical protein; hypothetical protein 5608833 5872836 PputGB1_5021 Pseudomonas putida GB-1 hypothetical protein YP_001671241.1 5608447 R 76869 CDS YP_001671242.1 167036011 5872837 complement(5608861..5609694) 1 NC_010322.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5032 hypothetical protein; hypothetical protein 5609694 5872837 PputGB1_5022 Pseudomonas putida GB-1 hypothetical protein YP_001671242.1 5608861 R 76869 CDS YP_001671243.1 167036012 5872838 5609875..5611110 1 NC_010322.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5033 Na+/H+ antiporter; sodium/hydrogen exchanger 5611110 5872838 PputGB1_5023 Pseudomonas putida GB-1 sodium/hydrogen exchanger YP_001671243.1 5609875 D 76869 CDS YP_001671244.1 167036013 5872839 complement(5611143..5611544) 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5034 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 5611544 5872839 PputGB1_5024 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001671244.1 5611143 R 76869 CDS YP_001671245.1 167036014 5872840 5611841..5613250 1 NC_010322.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 5613250 5872840 PputGB1_5025 Pseudomonas putida GB-1 S-adenosyl-L-homocysteine hydrolase YP_001671245.1 5611841 D 76869 CDS YP_001671246.1 167036015 5872841 5613373..5614218 1 NC_010322.1 KEGG: pen:PSEEN5038 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 5614218 5872841 PputGB1_5026 Pseudomonas putida GB-1 5,10-methylenetetrahydrofolate reductase YP_001671246.1 5613373 D 76869 CDS YP_001671247.1 167036016 5872842 5614312..5615388 1 NC_010322.1 KEGG: pap:PSPA7_0529 hypothetical protein; hypothetical protein 5615388 5872842 PputGB1_5027 Pseudomonas putida GB-1 hypothetical protein YP_001671247.1 5614312 D 76869 CDS YP_001671248.1 167036017 5872843 5615440..5616228 1 NC_010322.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein; extracellular solute-binding protein 5616228 5872843 PputGB1_5028 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671248.1 5615440 D 76869 CDS YP_001671249.1 167036018 5872844 5616446..5618326 1 NC_010322.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN5042 ATP-dependent RNA helicase RhlE, DEAD box family; DEAD/DEAH box helicase 5618326 5872844 PputGB1_5029 Pseudomonas putida GB-1 DEAD/DEAH box helicase YP_001671249.1 5616446 D 76869 CDS YP_001671250.1 167036019 5872845 complement(5618412..5618990) 1 NC_010322.1 PFAM: YceI family protein; KEGG: pen:PSEEN5043 hypothetical protein; hypothetical protein 5618990 5872845 PputGB1_5030 Pseudomonas putida GB-1 hypothetical protein YP_001671250.1 5618412 R 76869 CDS YP_001671251.1 167036020 5872846 complement(5619023..5619574) 1 NC_010322.1 PFAM: cytochrome B561; KEGG: pen:PSEEN5044 cytochrome, b561 family; cytochrome B561 5619574 5872846 PputGB1_5031 Pseudomonas putida GB-1 cytochrome B561 YP_001671251.1 5619023 R 76869 CDS YP_001671252.1 167036021 5872847 complement(5619776..5621626) 1 NC_010322.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN5045 flavin-containing monamine oxidase family protein; amine oxidase 5621626 5872847 PputGB1_5032 Pseudomonas putida GB-1 amine oxidase YP_001671252.1 5619776 R 76869 CDS YP_001671253.1 167036022 5872848 5621837..5622328 1 NC_010322.1 KEGG: pen:PSEEN5046 hypothetical protein; hypothetical protein 5622328 5872848 PputGB1_5033 Pseudomonas putida GB-1 hypothetical protein YP_001671253.1 5621837 D 76869 CDS YP_001671254.1 167036023 5872849 5622408..5623814 1 NC_010322.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5623814 5872849 PputGB1_5034 Pseudomonas putida GB-1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001671254.1 5622408 D 76869 CDS YP_001671255.1 167036024 5872850 5623989..5624708 1 NC_010322.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5624708 5872850 PputGB1_5035 Pseudomonas putida GB-1 16S ribosomal RNA methyltransferase RsmE YP_001671255.1 5623989 D 76869 CDS YP_001671256.1 167036025 5872851 complement(5624709..5625326) 1 NC_010322.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pen:PSEEN5049 hemolysin III; hemolysin III family channel protein 5625326 5872851 PputGB1_5036 Pseudomonas putida GB-1 hemolysin III family channel protein YP_001671256.1 5624709 R 76869 CDS YP_001671257.1 167036026 5872852 complement(5625388..5625861) 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN5050 chemotaxis protein; CheW domain-containing protein 5625861 5872852 PputGB1_5037 Pseudomonas putida GB-1 CheW domain-containing protein YP_001671257.1 5625388 R 76869 CDS YP_001671258.1 167036027 5872853 complement(5625854..5630797) 1 NC_010322.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN5051 sensor histidine kinase/response regulator ChpA; CheA signal transduction histidine kinase 5630797 5872853 PputGB1_5038 Pseudomonas putida GB-1 CheA signal transduction histidine kinase YP_001671258.1 5625854 R 76869 CDS YP_001671259.1 167036028 5872854 complement(5630820..5632880) 1 NC_010322.1 PFAM: chemotaxis sensory transducer; KEGG: pen:PSEEN5052 type IV pili methyl-accepting chemotaxis transducer PilJ; methyl-accepting chemotaxis sensory transducer 5632880 5872854 PputGB1_5039 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001671259.1 5630820 R 76869 CDS YP_001671260.1 167036029 5872855 complement(5632892..5633446) 1 NC_010322.1 PFAM: CheW domain protein; KEGG: pen:PSEEN5053 type IV pili signal transduction protein PilI; CheW protein 5633446 5872855 PputGB1_5040 Pseudomonas putida GB-1 CheW protein YP_001671260.1 5632892 R 76869 CDS YP_001671261.1 167036030 5872856 complement(5633443..5633808) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5054 type IV pili response regulator PilH; response regulator receiver protein 5633808 5872856 PputGB1_5041 Pseudomonas putida GB-1 response regulator receiver protein YP_001671261.1 5633443 R 76869 CDS YP_001671262.1 167036031 5872857 complement(5633856..5634257) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5055 type IV pili response regulator PilG; response regulator receiver protein 5634257 5872857 PputGB1_5042 Pseudomonas putida GB-1 response regulator receiver protein YP_001671262.1 5633856 R 76869 CDS YP_001671263.1 167036032 5872858 5634412..5635365 1 NC_010322.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5635365 5872858 PputGB1_5043 Pseudomonas putida GB-1 glutathione synthetase YP_001671263.1 5634412 D 76869 CDS YP_001671264.1 167036033 5872859 5635457..5636362 1 NC_010322.1 TIGRFAM: TonB family protein; KEGG: pen:PSEEN5057 hypothetical protein; TonB family protein 5636362 5872859 PputGB1_5044 Pseudomonas putida GB-1 TonB family protein YP_001671264.1 5635457 D 76869 CDS YP_001671265.1 167036034 5872860 5636529..5637098 1 NC_010322.1 PFAM: protein of unknown function DUF179; KEGG: pen:PSEEN5058 hypothetical protein; hypothetical protein 5637098 5872860 PputGB1_5045 Pseudomonas putida GB-1 hypothetical protein YP_001671265.1 5636529 D 76869 CDS YP_001671266.1 167036035 5872861 5637098..5637523 1 NC_010322.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5637523 5872861 PputGB1_5046 Pseudomonas putida GB-1 Holliday junction resolvase-like protein YP_001671266.1 5637098 D 76869 CDS YP_001671267.1 167036036 5872862 5637573..5638091 1 NC_010322.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5638091 5872862 PputGB1_5047 Pseudomonas putida GB-1 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001671267.1 5637573 D 76869 CDS YP_001671268.1 167036037 5872863 5638104..5639108 1 NC_010322.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 5639108 pyrB 5872863 pyrB Pseudomonas putida GB-1 aspartate carbamoyltransferase catalytic subunit YP_001671268.1 5638104 D 76869 CDS YP_001671269.1 167036038 5872864 5639105..5640376 1 NC_010322.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5640376 pyrC 5872864 pyrC Pseudomonas putida GB-1 dihydroorotase YP_001671269.1 5639105 D 76869 CDS YP_001671270.2 228925262 5872865 5640634..5641164 1 NC_010322.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5641164 5872865 PputGB1_5050 Pseudomonas putida GB-1 ATP-dependent protease peptidase subunit YP_001671270.2 5640634 D 76869 CDS YP_001671271.1 167036040 5872866 5641241..5642584 1 NC_010322.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5642584 hslU 5872866 hslU Pseudomonas putida GB-1 ATP-dependent protease ATP-binding subunit HslU YP_001671271.1 5641241 D 76869 CDS YP_001671272.1 167036041 5872867 5642673..5643050 1 NC_010322.1 PFAM: protein of unknown function DUF971; KEGG: pen:PSEEN5065 hypothetical protein; hypothetical protein 5643050 5872867 PputGB1_5052 Pseudomonas putida GB-1 hypothetical protein YP_001671272.1 5642673 D 76869 CDS YP_001671273.1 167036042 5872868 5643319..5644998 1 NC_010322.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5066 poly(3-hydroxyalkanoate) polymerase 1; class II poly(R)-hydroxyalkanoic acid synthase 5644998 5872868 PputGB1_5053 Pseudomonas putida GB-1 class II poly(R)-hydroxyalkanoic acid synthase YP_001671273.1 5643319 D 76869 CDS YP_001671274.1 167036043 5872869 5645062..5645913 1 NC_010322.1 TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5067 poly(3-hydroxyalkanoate) depolymerase; poly(3-hydroxyalkanoate) depolymerase 5645913 5872869 PputGB1_5054 Pseudomonas putida GB-1 poly(3-hydroxyalkanoate) depolymerase YP_001671274.1 5645062 D 76869 CDS YP_001671275.1 167036044 5872870 5645966..5647648 1 NC_010322.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5068 poly(3-hydroxyalkanoate) polymerase 2; class II poly(R)-hydroxyalkanoic acid synthase 5647648 5872870 PputGB1_5055 Pseudomonas putida GB-1 class II poly(R)-hydroxyalkanoic acid synthase YP_001671275.1 5645966 D 76869 CDS YP_001671276.1 167036045 5872871 5647662..5648276 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN5069 transcriptional regulator, TetR family; TetR family transcriptional regulator 5648276 5872871 PputGB1_5056 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001671276.1 5647662 D 76869 CDS YP_001671277.1 167036046 5872872 complement(5648398..5649174) 1 NC_010322.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5070 polyhydroxyalkanoate synthesis protein PhaF; poly(hydroxyalkanoate) granule-associated protein 5649174 5872872 PputGB1_5057 Pseudomonas putida GB-1 poly(hydroxyalkanoate) granule-associated protein YP_001671277.1 5648398 R 76869 CDS YP_001671278.1 167036047 5872873 complement(5649185..5649604) 1 NC_010322.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5071 polyhydroxyalkanoate granule-associated protein GA1; poly(hydroxyalkanoate) granule-associated protein 5649604 5872873 PputGB1_5058 Pseudomonas putida GB-1 poly(hydroxyalkanoate) granule-associated protein YP_001671278.1 5649185 R 76869 CDS YP_001671279.1 167036048 5872874 5649782..5654479 1 NC_010322.1 KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein 5654479 5872874 PputGB1_5059 Pseudomonas putida GB-1 hypothetical protein YP_001671279.1 5649782 D 76869 CDS YP_001671280.1 167036049 5872875 complement(5654492..5654767) 1 NC_010322.1 TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: pen:PSEEN5072 hypothetical protein; polyhydroxyalkanoic acid system protein 5654767 5872875 PputGB1_5060 Pseudomonas putida GB-1 polyhydroxyalkanoic acid system protein YP_001671280.1 5654492 R 76869 CDS YP_001671281.1 167036050 5872876 5654892..5655662 1 NC_010322.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5655662 ubiE 5872876 ubiE Pseudomonas putida GB-1 ubiquinone/menaquinone biosynthesis methyltransferase YP_001671281.1 5654892 D 76869 CDS YP_001671282.1 167036051 5872877 5655662..5656285 1 NC_010322.1 PFAM: Sterol-binding domain protein; KEGG: pen:PSEEN5074 hypothetical protein; sterol-binding domain-containing protein 5656285 5872877 PputGB1_5062 Pseudomonas putida GB-1 sterol-binding domain-containing protein YP_001671282.1 5655662 D 76869 CDS YP_001671283.1 167036052 5872878 5656282..5657904 1 NC_010322.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: pen:PSEEN5075 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; 2-polyprenylphenol 6-hydroxylase 5657904 5872878 PputGB1_5063 Pseudomonas putida GB-1 2-polyprenylphenol 6-hydroxylase YP_001671283.1 5656282 D 76869 CDS YP_001671284.1 167036053 5872879 5657977..5658369 1 NC_010322.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5658369 hisI 5872879 hisI Pseudomonas putida GB-1 phosphoribosyl-AMP cyclohydrolase YP_001671284.1 5657977 D 76869 CDS YP_001671285.1 167036054 5872880 5658371..5658706 1 NC_010322.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5658706 hisE 5872880 hisE Pseudomonas putida GB-1 phosphoribosyl-ATP pyrophosphatase YP_001671285.1 5658371 D 76869 CDS YP_001671286.1 167036055 5872881 5658732..5659004 1 NC_010322.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 5659004 tatA 5872881 tatA Pseudomonas putida GB-1 twin arginine translocase protein A YP_001671286.1 5658732 D 76869 CDS YP_001671287.1 167036056 5872882 5659008..5659385 1 NC_010322.1 Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5659385 tatB 5872882 tatB Pseudomonas putida GB-1 sec-independent translocase YP_001671287.1 5659008 D 76869 CDS YP_001671288.1 167036057 5872883 5659382..5660170 1 NC_010322.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pen:PSEEN5080 twin aqrginine translocase protein subunit C; Sec-independent protein translocase subunit TatC 5660170 5872883 PputGB1_5068 Pseudomonas putida GB-1 Sec-independent protein translocase subunit TatC YP_001671288.1 5659382 D 76869 CDS YP_001671289.1 167036058 5872884 5660167..5660874 1 NC_010322.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5660874 5872884 PputGB1_5069 Pseudomonas putida GB-1 16S ribosomal RNA methyltransferase RsmE YP_001671289.1 5660167 D 76869 CDS YP_001671290.1 167036059 5872885 5660976..5662892 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5082 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5662892 5872885 PputGB1_5070 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001671290.1 5660976 D 76869 CDS YP_001671291.1 167036060 5872886 5663055..5664998 1 NC_010322.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5084 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5664998 5872886 PputGB1_5071 Pseudomonas putida GB-1 methyl-accepting chemotaxis sensory transducer YP_001671291.1 5663055 D 76869 CDS YP_001671292.1 167036061 5872887 complement(5665033..5665767) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5085 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5665767 5872887 PputGB1_5072 Pseudomonas putida GB-1 ABC transporter-like protein YP_001671292.1 5665033 R 76869 CDS YP_001671293.1 167036062 5872888 complement(5665760..5666722) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5086 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5666722 5872888 PputGB1_5073 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001671293.1 5665760 R 76869 CDS YP_001671294.1 167036063 5872889 complement(5666802..5667602) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN5087 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5667602 5872889 PputGB1_5074 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671294.1 5666802 R 76869 CDS YP_001671295.1 167036064 5872890 complement(5667852..5670425) 1 NC_010322.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 5670425 5872890 PputGB1_5075 Pseudomonas putida GB-1 glucosyltransferase MdoH YP_001671295.1 5667852 R 76869 CDS YP_001671296.1 167036065 5872891 complement(5670418..5672097) 1 NC_010322.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 5672097 mdoG 5872891 mdoG Pseudomonas putida GB-1 glucan biosynthesis protein G YP_001671296.1 5670418 R 76869 CDS YP_001671297.1 167036066 5872892 complement(5672421..5672858) 1 NC_010322.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 5672858 5872892 PputGB1_5077 Pseudomonas putida GB-1 D-tyrosyl-tRNA(Tyr) deacylase YP_001671297.1 5672421 R 76869 CDS YP_001671298.1 167036067 5872893 complement(5672855..5673826) 1 NC_010322.1 KEGG: pen:PSEEN5092 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 5673826 5872893 PputGB1_5078 Pseudomonas putida GB-1 proline iminopeptidase YP_001671298.1 5672855 R 76869 CDS YP_001671299.1 167036068 5872894 complement(5673904..5674707) 1 NC_010322.1 PFAM: N-formylglutamate amidohydrolase; KEGG: pen:PSEEN5093 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 5674707 5872894 PputGB1_5079 Pseudomonas putida GB-1 N-formylglutamate amidohydrolase YP_001671299.1 5673904 R 76869 CDS YP_001671300.1 167036069 5872895 complement(5674718..5675923) 1 NC_010322.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 5675923 5872895 PputGB1_5080 Pseudomonas putida GB-1 imidazolonepropionase YP_001671300.1 5674718 R 76869 CDS YP_001671301.1 167036070 5872896 complement(5675939..5677342) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5095 amino acid transporter; amino acid permease-associated protein 5677342 5872896 PputGB1_5081 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001671301.1 5675939 R 76869 CDS YP_001671302.1 167036071 5872897 complement(5677501..5679033) 1 NC_010322.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 5679033 5872897 PputGB1_5082 Pseudomonas putida GB-1 histidine ammonia-lyase YP_001671302.1 5677501 R 76869 CDS YP_001671303.1 167036072 5872898 complement(5679141..5680814) 1 NC_010322.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 5680814 5872898 PputGB1_5083 Pseudomonas putida GB-1 urocanate hydratase YP_001671303.1 5679141 R 76869 CDS YP_001671304.1 167036073 5872899 complement(5681210..5681782) 1 NC_010322.1 PFAM: protein of unknown function DUF886; KEGG: pen:PSEEN5098 hypothetical protein; hypothetical protein 5681782 5872899 PputGB1_5084 Pseudomonas putida GB-1 hypothetical protein YP_001671304.1 5681210 R 76869 CDS YP_001671305.1 167036074 5872900 complement(5681779..5682525) 1 NC_010322.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN5099 histidine utilization repressor; histidine utilization repressor 5682525 5872900 PputGB1_5085 Pseudomonas putida GB-1 histidine utilization repressor YP_001671305.1 5681779 R 76869 CDS YP_001671306.1 167036075 5872901 5682635..5683999 1 NC_010322.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5683999 5872901 PputGB1_5086 Pseudomonas putida GB-1 N-formimino-L-glutamate deiminase YP_001671306.1 5682635 D 76869 CDS YP_001671307.1 167036076 5872902 complement(5684031..5684603) 1 NC_010322.1 PFAM: Lipocalin family protein; KEGG: pen:PSEEN5102 outer membrane lipoprotein Blc; lipocalin family protein 5684603 5872902 PputGB1_5087 Pseudomonas putida GB-1 lipocalin family protein YP_001671307.1 5684031 R 76869 CDS YP_001671308.1 167036077 5872903 complement(5684600..5684854) 1 NC_010322.1 KEGG: pen:PSEEN5103 lipoprotein; hypothetical protein 5684854 5872903 PputGB1_5088 Pseudomonas putida GB-1 hypothetical protein YP_001671308.1 5684600 R 76869 CDS YP_001671309.1 167036078 5872904 complement(5685077..5685673) 1 NC_010322.1 PFAM: protein of unknown function DUF924; KEGG: pen:PSEEN5105 hypothetical protein; hypothetical protein 5685673 5872904 PputGB1_5089 Pseudomonas putida GB-1 hypothetical protein YP_001671309.1 5685077 R 76869 CDS YP_001671310.1 167036079 5872905 complement(5685677..5686687) 1 NC_010322.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 5686687 5872905 PputGB1_5090 Pseudomonas putida GB-1 fructose-1,6-bisphosphatase YP_001671310.1 5685677 R 76869 CDS YP_001671311.1 167036080 5872906 complement(5686944..5689394) 1 NC_010322.1 KEGG: pen:PSEEN5107 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 5689394 5872906 PputGB1_5091 Pseudomonas putida GB-1 glycogen/starch/alpha-glucan phosphorylase YP_001671311.1 5686944 R 76869 CDS YP_001671312.1 167036081 5872907 5689579..5689983 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5108 hypothetical protein; hypothetical protein 5689983 5872907 PputGB1_5092 Pseudomonas putida GB-1 hypothetical protein YP_001671312.1 5689579 D 76869 CDS YP_001671313.1 167036082 5872908 complement(5690175..5690714) 1 NC_010322.1 hypothetical protein 5690714 5872908 PputGB1_5093 Pseudomonas putida GB-1 hypothetical protein YP_001671313.1 5690175 R 76869 CDS YP_001671314.1 167036083 5872909 complement(5690768..5691598) 1 NC_010322.1 hypothetical protein 5691598 5872909 PputGB1_5094 Pseudomonas putida GB-1 hypothetical protein YP_001671314.1 5690768 R 76869 CDS YP_001671315.1 167036084 5872910 complement(5691605..5692189) 1 NC_010322.1 KEGG: bte:BTH_II1428 hypothetical protein; hypothetical protein 5692189 5872910 PputGB1_5095 Pseudomonas putida GB-1 hypothetical protein YP_001671315.1 5691605 R 76869 CDS YP_001671316.1 167036085 5872911 complement(5692390..5694210) 1 NC_010322.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pen:PSEEN0392 regulatory protein TypA; GTP-binding protein TypA 5694210 5872911 PputGB1_5096 Pseudomonas putida GB-1 GTP-binding protein TypA YP_001671316.1 5692390 R 76869 CDS YP_001671317.1 167036086 5872912 complement(5694339..5695793) 1 NC_010322.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 5695793 5872912 PputGB1_5097 Pseudomonas putida GB-1 thiamine biosynthesis protein ThiI YP_001671317.1 5694339 R 76869 CDS YP_001671318.1 167036087 5872913 5696221..5697627 1 NC_010322.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: pfl:PFL_0386 glutamine synthetase, type I; glutamine synthetase, type I 5697627 5872913 PputGB1_5098 Pseudomonas putida GB-1 glutamine synthetase, type I YP_001671318.1 5696221 D 76869 CDS YP_001671319.1 167036088 5872914 5697779..5698315 1 NC_010322.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: pen:PSEEN0389 chorismate mutase; chorismate mutase 5698315 5872914 PputGB1_5099 Pseudomonas putida GB-1 chorismate mutase YP_001671319.1 5697779 D 76869 CDS YP_001671320.1 167036089 5872915 5698582..5699667 1 NC_010322.1 KEGG: pen:PSEEN0387 sensory box histidine kinase NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 5699667 5872915 PputGB1_5100 Pseudomonas putida GB-1 signal transduction histidine kinase, nitrogen specific, NtrB YP_001671320.1 5698582 D 76869 CDS YP_001671321.1 167036090 5872916 5699664..5701100 1 NC_010322.1 KEGG: pen:PSEEN0386 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 5701100 5872916 PputGB1_5101 Pseudomonas putida GB-1 nitrogen metabolism transcriptional regulator NtrC YP_001671321.1 5699664 D 76869 CDS YP_001671322.1 167036091 5872917 complement(5701560..5701946) 1 NC_010322.1 KEGG: pen:PSEEN0385 hypothetical protein; hypothetical protein 5701946 5872917 PputGB1_5102 Pseudomonas putida GB-1 hypothetical protein YP_001671322.1 5701560 R 76869 CDS YP_001671323.1 167036092 5872918 5701996..5702457 1 NC_010322.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN0384 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 5702457 5872918 PputGB1_5103 Pseudomonas putida GB-1 RNA methyltransferase YP_001671323.1 5701996 D 76869 CDS YP_001671324.1 167036093 5872919 complement(5702516..5703001) 1 NC_010322.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 5703001 5872919 PputGB1_5104 Pseudomonas putida GB-1 preprotein translocase subunit SecB YP_001671324.1 5702516 R 76869 CDS YP_001671325.1 167036094 5872920 complement(5703041..5703295) 1 NC_010322.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pen:PSEEN0382 glutaredoxin; glutaredoxin 3 5703295 5872920 PputGB1_5105 Pseudomonas putida GB-1 glutaredoxin 3 YP_001671325.1 5703041 R 76869 CDS YP_001671326.1 167036095 5872921 complement(5703297..5703710) 1 NC_010322.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0381 hypothetical protein; rhodanese domain-containing protein 5703710 5872921 PputGB1_5106 Pseudomonas putida GB-1 rhodanese domain-containing protein YP_001671326.1 5703297 R 76869 CDS YP_001671327.1 167036096 5872922 5703917..5705452 1 NC_010322.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5705452 5872922 PputGB1_5107 Pseudomonas putida GB-1 phosphoglyceromutase YP_001671327.1 5703917 D 76869 CDS YP_001671328.1 167036097 5872923 5705595..5706911 1 NC_010322.1 PFAM: peptidase M23B; KEGG: pen:PSEEN0379 metalloendopeptidase, M23/M37 family; peptidase M23B 5706911 5872923 PputGB1_5108 Pseudomonas putida GB-1 peptidase M23B YP_001671328.1 5705595 D 76869 CDS YP_001671329.1 167036098 5872924 5706990..5708306 1 NC_010322.1 KEGG: pen:PSEEN0378 carboxy-terminal processing protease precursor; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 5708306 5872924 PputGB1_5109 Pseudomonas putida GB-1 carboxyl-terminal protease YP_001671329.1 5706990 D 76869 CDS YP_001671330.1 167036099 5872925 5708303..5709082 1 NC_010322.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pen:PSEEN0377 hypothetical protein; hypothetical protein 5709082 5872925 PputGB1_5110 Pseudomonas putida GB-1 hypothetical protein YP_001671330.1 5708303 D 76869 CDS YP_001671331.1 167036100 5872926 complement(5709130..5713809) 1 NC_010322.1 KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein 5713809 5872926 PputGB1_5111 Pseudomonas putida GB-1 hypothetical protein YP_001671331.1 5709130 R 76869 CDS YP_001671332.1 167036101 5872927 complement(5713978..5715981) 1 NC_010322.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0375 choline transporter BetT; choline/carnitine/betaine transporter 5715981 5872927 PputGB1_5112 Pseudomonas putida GB-1 choline/carnitine/betaine transporter YP_001671332.1 5713978 R 76869 CDS YP_001671333.1 167036102 5872928 5716458..5717114 1 NC_010322.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 5717114 5872928 PputGB1_5113 Pseudomonas putida GB-1 transcriptional regulator BetI YP_001671333.1 5716458 D 76869 CDS YP_001671334.1 167036103 5872929 5717154..5718626 1 NC_010322.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5718626 5872929 PputGB1_5114 Pseudomonas putida GB-1 betaine aldehyde dehydrogenase YP_001671334.1 5717154 D 76869 CDS YP_001671335.1 167036104 5872930 5718704..5720401 1 NC_010322.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5720401 5872930 PputGB1_5115 Pseudomonas putida GB-1 choline dehydrogenase YP_001671335.1 5718704 D 76869 CDS YP_001671336.1 167036105 5872931 5720668..5722410 1 NC_010322.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5722410 5872931 PputGB1_5116 Pseudomonas putida GB-1 potassium/proton antiporter YP_001671336.1 5720668 D 76869 CDS YP_001671337.1 167036106 5872932 5722446..5725754 1 NC_010322.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5725754 5872932 PputGB1_5117 Pseudomonas putida GB-1 potassium efflux protein KefA YP_001671337.1 5722446 D 76869 CDS YP_001671338.1 167036107 5872933 5725800..5727260 1 NC_010322.1 PFAM: protein of unknown function UPF0061; KEGG: pen:PSEEN0369 hypothetical protein; hypothetical protein 5727260 5872933 PputGB1_5118 Pseudomonas putida GB-1 hypothetical protein YP_001671338.1 5725800 D 76869 CDS YP_001671339.1 167036108 5872934 5727338..5727772 1 NC_010322.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0368 thioredoxin; thioredoxin 5727772 5872934 PputGB1_5119 Pseudomonas putida GB-1 thioredoxin YP_001671339.1 5727338 D 76869 CDS YP_001671340.1 167036109 5872935 complement(5727769..5728542) 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase 5728542 5872935 PputGB1_5120 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001671340.1 5727769 R 76869 CDS YP_001671341.1 167036110 5872936 complement(5728619..5729518) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0342 transcriptional regulator, LysR family; LysR family transcriptional regulator 5729518 5872936 PputGB1_5121 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671341.1 5728619 R 76869 CDS YP_001671342.1 167036111 5872937 5729627..5730871 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0341 transporter, MFS superfamily; major facilitator superfamily transporter 5730871 5872937 PputGB1_5122 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001671342.1 5729627 D 76869 CDS YP_001671343.1 167036112 5872938 complement(5730906..5731253) 1 NC_010322.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0340 hypothetical protein; hypothetical protein 5731253 5872938 PputGB1_5123 Pseudomonas putida GB-1 hypothetical protein YP_001671343.1 5730906 R 76869 CDS YP_001671344.1 167036113 5872939 complement(5731370..5732434) 1 NC_010322.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 5732434 hemE 5872939 hemE Pseudomonas putida GB-1 uroporphyrinogen decarboxylase YP_001671344.1 5731370 R 76869 CDS YP_001671345.1 167036114 5872940 complement(5732563..5733981) 1 NC_010322.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 5733981 gltD 5872940 gltD Pseudomonas putida GB-1 glutamate synthase subunit beta YP_001671345.1 5732563 R 76869 CDS YP_001671346.1 167036115 5872941 complement(5734088..5738533) 1 NC_010322.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 5738533 gltB 5872941 gltB Pseudomonas putida GB-1 glutamate synthase subunit alpha YP_001671346.1 5734088 R 76869 CDS YP_001671347.1 167036116 5872942 complement(5738907..5740511) 1 NC_010322.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN0336 hypothetical protein; sporulation domain-containing protein 5740511 5872942 PputGB1_5127 Pseudomonas putida GB-1 sporulation domain-containing protein YP_001671347.1 5738907 R 76869 CDS YP_001671348.1 167036117 5872943 complement(5740527..5741657) 1 NC_010322.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 5741657 aroB 5872943 aroB Pseudomonas putida GB-1 3-dehydroquinate synthase YP_001671348.1 5740527 R 76869 CDS YP_001671349.1 167036118 5872944 complement(5741720..5742211) 1 NC_010322.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 5742211 aroK 5872944 aroK Pseudomonas putida GB-1 shikimate kinase YP_001671349.1 5741720 R 76869 CDS YP_001671350.1 167036119 5872945 complement(5742243..5743505) 1 NC_010322.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: pen:PSEEN0333 type IV pili biogenesis protein PilQ; type IV pilus secretin PilQ 5743505 5872945 PputGB1_5130 Pseudomonas putida GB-1 type IV pilus secretin PilQ YP_001671350.1 5742243 R 76869 CDS YP_001671351.1 167036120 5872946 complement(5743435..5744445) 1 NC_010322.1 KEGG: pen:PSEEN0332 type IV pili biogenesis protein PilP; type IV pili biogenesis protein PilP 5744445 5872946 PputGB1_5131 Pseudomonas putida GB-1 type IV pili biogenesis protein PilP YP_001671351.1 5743435 R 76869 CDS YP_001671352.1 167036121 5872947 complement(5744442..5744978) 1 NC_010322.1 PFAM: Fimbrial assembly family protein; KEGG: pen:PSEEN0331 type IV pili biogenesis protein PilN; fimbrial assembly family protein 5744978 5872947 PputGB1_5132 Pseudomonas putida GB-1 fimbrial assembly family protein YP_001671352.1 5744442 R 76869 CDS YP_001671353.1 167036122 5872948 complement(5744975..5745856) 1 NC_010322.1 KEGG: pen:PSEEN0330 type IV pili biogenesis protein PilM; type IV pili biogenesis protein PilM 5745856 5872948 PputGB1_5133 Pseudomonas putida GB-1 type IV pili biogenesis protein PilM YP_001671353.1 5744975 R 76869 CDS YP_001671354.1 167036123 5872949 5746035..5748488 1 NC_010322.1 KEGG: pen:PSEEN0328 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 5748488 5872949 PputGB1_5134 Pseudomonas putida GB-1 1A family penicillin-binding protein YP_001671354.1 5746035 D 76869 CDS YP_001671355.1 167036124 5872950 complement(5748672..5749949) 1 NC_010322.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase 5749949 5872950 PputGB1_5135 Pseudomonas putida GB-1 malate dehydrogenase YP_001671355.1 5748672 R 76869 CDS YP_001671356.1 167036125 5872951 complement(5750118..5750939) 1 NC_010322.1 PFAM: nuclease (SNase domain protein); KEGG: pen:PSEEN0326 nuclease, staphylococcal nuclease homologue; nuclease 5750939 5872951 PputGB1_5136 Pseudomonas putida GB-1 nuclease YP_001671356.1 5750118 R 76869 CDS YP_001671357.1 167036126 5872952 complement(5750942..5751157) 1 NC_010322.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 5751157 rpmE 5872952 rpmE Pseudomonas putida GB-1 50S ribosomal protein L31 YP_001671357.1 5750942 R 76869 CDS YP_001671358.1 167036127 5872953 5751325..5753544 1 NC_010322.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5753544 5872953 PputGB1_5138 Pseudomonas putida GB-1 primosome assembly protein PriA YP_001671358.1 5751325 D 76869 CDS YP_001671359.1 167036128 5872954 5753665..5755401 1 NC_010322.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5755401 argS 5872954 argS Pseudomonas putida GB-1 arginyl-tRNA synthetase YP_001671359.1 5753665 D 76869 CDS YP_001671360.1 167036129 5872955 5755403..5756101 1 NC_010322.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN0322 hypothetical protein; sporulation domain-containing protein 5756101 5872955 PputGB1_5140 Pseudomonas putida GB-1 sporulation domain-containing protein YP_001671360.1 5755403 D 76869 CDS YP_001671361.1 167036130 5872956 complement(5756139..5756558) 1 NC_010322.1 PFAM: TM2 domain containing protein?; KEGG: pen:PSEEN0321 hypothetical protein; TM2 domain-containing protein 5756558 5872956 PputGB1_5141 Pseudomonas putida GB-1 TM2 domain-containing protein YP_001671361.1 5756139 R 76869 CDS YP_001671362.1 167036131 5872957 5756725..5757351 1 NC_010322.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN0320 hypothetical protein; NLP/P60 protein 5757351 5872957 PputGB1_5142 Pseudomonas putida GB-1 NLP/P60 protein YP_001671362.1 5756725 D 76869 CDS YP_001671363.1 167036132 5872958 complement(5757463..5758461) 1 NC_010322.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pen:PSEEN0319 type IV pili twitching motility protein PilT; twitching motility protein 5758461 5872958 PputGB1_5143 Pseudomonas putida GB-1 twitching motility protein YP_001671363.1 5757463 R 76869 CDS YP_001671364.1 167036133 5872959 5758527..5759213 1 NC_010322.1 PFAM: alanine racemase domain protein; KEGG: pen:PSEEN0318 hypothetical protein; alanine racemase domain-containing protein 5759213 5872959 PputGB1_5144 Pseudomonas putida GB-1 alanine racemase domain-containing protein YP_001671364.1 5758527 D 76869 CDS YP_001671365.1 167036134 5872960 5759252..5760070 1 NC_010322.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5760070 5872960 PputGB1_5145 Pseudomonas putida GB-1 pyrroline-5-carboxylate reductase YP_001671365.1 5759252 D 76869 CDS YP_001671366.1 167036135 5872961 5760081..5760671 1 NC_010322.1 PFAM: protein of unknown function YGGT; KEGG: pen:PSEEN0316 hypothetical protein; hypothetical protein 5760671 5872961 PputGB1_5146 Pseudomonas putida GB-1 hypothetical protein YP_001671366.1 5760081 D 76869 CDS YP_001671367.1 167036136 5872962 5760760..5761899 1 NC_010322.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5761899 metX 5872962 metX Pseudomonas putida GB-1 homoserine O-acetyltransferase YP_001671367.1 5760760 D 76869 CDS YP_001671368.1 167036137 5872963 5761907..5762527 1 NC_010322.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0314 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW 5762527 5872963 PputGB1_5148 Pseudomonas putida GB-1 methionine biosynthesis protein MetW YP_001671368.1 5761907 D 76869 CDS YP_001671369.1 167036138 5872964 5762550..5762984 1 NC_010322.1 KEGG: pen:PSEEN0313 hypothetical protein; hypothetical protein 5762984 5872964 PputGB1_5149 Pseudomonas putida GB-1 hypothetical protein YP_001671369.1 5762550 D 76869 CDS YP_001671370.1 167036139 5872965 5762981..5763577 1 NC_010322.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 5763577 5872965 PputGB1_5150 Pseudomonas putida GB-1 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001671370.1 5762981 D 76869 CDS YP_001671371.1 167036140 5872966 5763574..5764749 1 NC_010322.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5764749 5872966 PputGB1_5151 Pseudomonas putida GB-1 coproporphyrinogen III oxidase YP_001671371.1 5763574 D 76869 CDS YP_001671372.1 167036141 5872967 5764759..5765085 1 NC_010322.1 KEGG: pen:PSEEN0310 hypothetical protein; hypothetical protein 5765085 5872967 PputGB1_5152 Pseudomonas putida GB-1 hypothetical protein YP_001671372.1 5764759 D 76869 CDS YP_001671373.1 167036142 5872968 complement(5765737..5766459) 1 NC_010322.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 5766459 trmB 5872968 trmB Pseudomonas putida GB-1 tRNA (guanine-N(7)-)-methyltransferase YP_001671373.1 5765737 R 76869 CDS YP_001671374.1 167036143 5872969 complement(5766469..5767281) 1 NC_010322.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 5767281 thiG 5872969 thiG Pseudomonas putida GB-1 thiazole synthase YP_001671374.1 5766469 R 76869 CDS YP_001671375.1 167036144 5872970 complement(5767336..5767536) 1 NC_010322.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 5767536 5872970 PputGB1_5155 Pseudomonas putida GB-1 sulfur carrier protein ThiS YP_001671375.1 5767336 R 76869 CDS YP_001671376.1 167036145 5872971 complement(5767639..5768010) 1 NC_010322.1 PFAM: protein of unknown function DUF423; KEGG: pen:PSEEN0305 hypothetical protein; hypothetical protein 5768010 5872971 PputGB1_5156 Pseudomonas putida GB-1 hypothetical protein YP_001671376.1 5767639 R 76869 CDS YP_001671377.1 167036146 5872972 5768075..5768785 1 NC_010322.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5768785 mtgA 5872972 mtgA Pseudomonas putida GB-1 monofunctional biosynthetic peptidoglycan transglycosylase YP_001671377.1 5768075 D 76869 CDS YP_001671378.1 167036147 5872973 complement(5768965..5769819) 1 NC_010322.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 5769819 5872973 PputGB1_5158 Pseudomonas putida GB-1 RNA polymerase factor sigma-32 YP_001671378.1 5768965 R 76869 CDS YP_001671379.1 167036148 5872974 complement(5769931..5770956) 1 NC_010322.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0302 cell division protein FtsX; hypothetical protein 5770956 5872974 PputGB1_5159 Pseudomonas putida GB-1 hypothetical protein YP_001671379.1 5769931 R 76869 CDS YP_001671380.1 167036149 5872975 complement(5770953..5771624) 1 NC_010322.1 KEGG: pen:PSEEN0301 cell division ATP binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 5771624 5872975 PputGB1_5160 Pseudomonas putida GB-1 cell division ATP-binding protein FtsE YP_001671380.1 5770953 R 76869 CDS YP_001671381.1 167036150 5872976 complement(5771627..5773159) 1 NC_010322.1 KEGG: pen:PSEEN0300 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 5773159 5872976 PputGB1_5161 Pseudomonas putida GB-1 signal recognition particle-docking protein FtsY YP_001671381.1 5771627 R 76869 CDS YP_001671382.1 167036151 5872977 5773391..5774746 1 NC_010322.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0299 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 5774746 5872977 PputGB1_5162 Pseudomonas putida GB-1 peptidase M16 domain-containing protein YP_001671382.1 5773391 D 76869 CDS YP_001671383.1 167036152 5872978 5774739..5776229 1 NC_010322.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0298 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 5776229 5872978 PputGB1_5163 Pseudomonas putida GB-1 peptidase M16 domain-containing protein YP_001671383.1 5774739 D 76869 CDS YP_001671384.1 167036153 5872979 5776229..5776831 1 NC_010322.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0297 methyltransferase; methyltransferase 5776831 5872979 PputGB1_5164 Pseudomonas putida GB-1 methyltransferase YP_001671384.1 5776229 D 76869 CDS YP_001671385.1 167036154 5872980 5776924..5778225 1 NC_010322.1 PFAM: peptidase M16 domain protein; KEGG: pmy:Pmen_4176 peptidase M16 domain protein; peptidase M16 domain-containing protein 5778225 5872980 PputGB1_5165 Pseudomonas putida GB-1 peptidase M16 domain-containing protein YP_001671385.1 5776924 D 76869 CDS YP_001671386.1 167036155 5872981 5778218..5779591 1 NC_010322.1 PFAM: peptidase M16 domain protein; KEGG: psp:PSPPH_4783 peptidase, M16 family; peptidase M16 domain-containing protein 5779591 5872981 PputGB1_5166 Pseudomonas putida GB-1 peptidase M16 domain-containing protein YP_001671386.1 5778218 D 76869 CDS YP_001671387.1 167036156 5872982 5779652..5780644 1 NC_010322.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN0296 hydrolase, alpha/beta superfamily; alpha/beta hydrolase fold family protein 5780644 5872982 PputGB1_5167 Pseudomonas putida GB-1 alpha/beta hydrolase fold family protein YP_001671387.1 5779652 D 76869 CDS YP_001671388.1 167036157 5872983 complement(5780657..5781511) 1 NC_010322.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0295 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 5781511 5872983 PputGB1_5168 Pseudomonas putida GB-1 rhodanese domain-containing protein YP_001671388.1 5780657 R 76869 CDS YP_001671389.1 167036158 5872984 complement(5781547..5782212) 1 NC_010322.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN0294 transcriptional regulator, TetR family; TetR family transcriptional regulator 5782212 5872984 PputGB1_5169 Pseudomonas putida GB-1 TetR family transcriptional regulator YP_001671389.1 5781547 R 76869 CDS YP_001671390.1 167036159 5872985 5782364..5783794 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0293 coniferyl aldehyde dehydrogenase (CALDH); aldehyde dehydrogenase 5783794 5872985 PputGB1_5170 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001671390.1 5782364 D 76869 CDS YP_001671391.1 167036160 5872986 5783805..5784290 1 NC_010322.1 KEGG: pen:PSEEN0292 hypothetical protein; hypothetical protein 5784290 5872986 PputGB1_5171 Pseudomonas putida GB-1 hypothetical protein YP_001671391.1 5783805 D 76869 CDS YP_001671392.1 167036161 5872987 5784311..5785909 1 NC_010322.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0291 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 5785909 5872987 PputGB1_5172 Pseudomonas putida GB-1 glucose-methanol-choline oxidoreductase YP_001671392.1 5784311 D 76869 CDS YP_001671393.1 167036162 5872988 5786022..5786501 1 NC_010322.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5786501 coaD 5872988 coaD Pseudomonas putida GB-1 phosphopantetheine adenylyltransferase YP_001671393.1 5786022 D 76869 CDS YP_001671394.1 167036163 5872989 5786609..5786860 1 NC_010322.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0289 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin 5786860 5872989 PputGB1_5174 Pseudomonas putida GB-1 4Fe-4S ferredoxin YP_001671394.1 5786609 D 76869 CDS YP_001671395.1 167036164 5872990 complement(5787009..5787821) 1 NC_010322.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 5787821 5872990 PputGB1_5175 Pseudomonas putida GB-1 formamidopyrimidine-DNA glycosylase YP_001671395.1 5787009 R 76869 CDS YP_001671396.1 167036165 5872991 complement(5787825..5788697) 1 NC_010322.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0286 hypothetical protein; putative signal transduction protein 5788697 5872991 PputGB1_5176 Pseudomonas putida GB-1 putative signal transduction protein YP_001671396.1 5787825 R 76869 CDS YP_001671397.1 167036166 5872992 5788826..5790022 1 NC_010322.1 KEGG: pen:PSEEN0284 hypothetical protein; hypothetical protein 5790022 5872992 PputGB1_5177 Pseudomonas putida GB-1 hypothetical protein YP_001671397.1 5788826 D 76869 CDS YP_001671398.1 167036167 5872993 5790294..5792135 1 NC_010322.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5792135 5872993 PputGB1_5178 Pseudomonas putida GB-1 dihydroxy-acid dehydratase YP_001671398.1 5790294 D 76869 CDS YP_001671399.1 167036168 5872995 complement(5793285..5793824) 1 NC_010322.1 KEGG: pen:PSEEN0280 hypothetical protein; hypothetical protein 5793824 5872995 PputGB1_5181 Pseudomonas putida GB-1 hypothetical protein YP_001671399.1 5793285 R 76869 CDS YP_001671400.1 167036169 5872996 complement(5793970..5795025) 1 NC_010322.1 KEGG: pen:PSEEN0278 hypothetical protein; hypothetical protein 5795025 5872996 PputGB1_5182 Pseudomonas putida GB-1 hypothetical protein YP_001671400.1 5793970 R 76869 CDS YP_001671401.1 167036170 5872997 5795270..5796661 1 NC_010322.1 PFAM: sodium:dicarboxylate symporter; KEGG: pen:PSEEN0277 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 5796661 5872997 PputGB1_5183 Pseudomonas putida GB-1 sodium:dicarboxylate symporter YP_001671401.1 5795270 D 76869 CDS YP_001671402.1 167036171 5872998 complement(5796697..5797212) 1 NC_010322.1 PFAM: dihydrofolate reductase region; KEGG: pen:PSEEN0273 dihydrofolate reductase type I, trimethoprim resistance; dihydrofolate reductase 5797212 5872998 PputGB1_5184 Pseudomonas putida GB-1 dihydrofolate reductase YP_001671402.1 5796697 R 76869 CDS YP_001671403.1 167036172 5872999 5797267..5798658 1 NC_010322.1 KEGG: pen:PSEEN0272 hypothetical protein; hypothetical protein 5798658 5872999 PputGB1_5185 Pseudomonas putida GB-1 hypothetical protein YP_001671403.1 5797267 D 76869 CDS YP_001671404.1 167036173 5873000 5798651..5800015 1 NC_010322.1 PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN0271 hypothetical protein; HSR1-like GTP-binding protein 5800015 5873000 PputGB1_5186 Pseudomonas putida GB-1 HSR1-like GTP-binding protein YP_001671404.1 5798651 D 76869 CDS YP_001671405.1 167036174 5873001 complement(5800033..5800581) 1 NC_010322.1 TIGRFAM: metal dependent phophohydrolase; phosphonate degradation operons associated HDIG domain protein; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pen:PSEEN0270 hypothetical protein; metal dependent phosphohydrolase 5800581 5873001 PputGB1_5187 Pseudomonas putida GB-1 metal dependent phosphohydrolase YP_001671405.1 5800033 R 76869 CDS YP_001671406.1 167036175 5873002 complement(5800656..5801681) 1 NC_010322.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0269 ABC transporter, periplasmic binding protein; 2-aminoethylphosphonate ABC transporter substrate-binding protein 5801681 5873002 PputGB1_5188 Pseudomonas putida GB-1 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_001671406.1 5800656 R 76869 CDS YP_001671407.1 167036176 5873003 complement(5801700..5803424) 1 NC_010322.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0268 ABC transporter, permease protein; 2-aminoethylphosphonate ABC transport system, permease 5803424 5873003 PputGB1_5189 Pseudomonas putida GB-1 2-aminoethylphosphonate ABC transport system, permease YP_001671407.1 5801700 R 76869 CDS YP_001671408.1 167036177 5873004 complement(5803426..5804484) 1 NC_010322.1 KEGG: pen:PSEEN0267 ABC transporter, ATP-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein 5804484 5873004 PputGB1_5190 Pseudomonas putida GB-1 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_001671408.1 5803426 R 76869 CDS YP_001671409.1 167036178 5873005 complement(5804719..5805588) 1 NC_010322.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5231 transcriptional regulator, LysR family; LysR family transcriptional regulator 5805588 5873005 PputGB1_5191 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671409.1 5804719 R 76869 CDS YP_001671410.1 167036179 5873006 complement(5805598..5807850) 1 NC_010322.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN5232 cadmium translocating P-type ATPase; heavy metal translocating P-type ATPase 5807850 5873006 PputGB1_5192 Pseudomonas putida GB-1 heavy metal translocating P-type ATPase YP_001671410.1 5805598 R 76869 CDS YP_001671411.1 167036180 5873007 5807933..5808376 1 NC_010322.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN5233 transcriptional regulator CadR; MerR family transcriptional regulator 5808376 5873007 PputGB1_5193 Pseudomonas putida GB-1 MerR family transcriptional regulator YP_001671411.1 5807933 D 76869 CDS YP_001671412.1 167036181 5873008 complement(5808419..5809390) 1 NC_010322.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 5809390 thyA 5873008 thyA Pseudomonas putida GB-1 thymidylate synthase YP_001671412.1 5808419 R 76869 CDS YP_001671413.1 167036182 5873009 complement(5809442..5810248) 1 NC_010322.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 5810248 5873009 PputGB1_5195 Pseudomonas putida GB-1 prolipoprotein diacylglyceryl transferase YP_001671413.1 5809442 R 76869 CDS YP_001671414.1 167036183 5873010 complement(5810265..5811047) 1 NC_010322.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN5236 hypothetical protein; hypothetical protein 5811047 5873010 PputGB1_5196 Pseudomonas putida GB-1 hypothetical protein YP_001671414.1 5810265 R 76869 CDS YP_001671415.1 167036184 5873011 5811177..5811923 1 NC_010322.1 PFAM: protein of unknown function DUF833; KEGG: pen:PSEEN5237 hypothetical protein; hypothetical protein 5811923 5873011 PputGB1_5197 Pseudomonas putida GB-1 hypothetical protein YP_001671415.1 5811177 D 76869 CDS YP_001671416.1 167036185 5873012 complement(5811956..5814235) 1 NC_010322.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN5238 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase PtsP 5814235 5873012 PputGB1_5198 Pseudomonas putida GB-1 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001671416.1 5811956 R 76869 CDS YP_001671417.1 167036186 5873013 complement(5814258..5814737) 1 NC_010322.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 5814737 5873013 PputGB1_5199 Pseudomonas putida GB-1 dinucleoside polyphosphate hydrolase YP_001671417.1 5814258 R 76869 CDS YP_001671418.1 167036187 5873014 5814879..5815535 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5240 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 5815535 5873014 PputGB1_5200 Pseudomonas putida GB-1 HAD family hydrolase YP_001671418.1 5814879 D 76869 CDS YP_001671419.1 167036188 5873015 complement(5815652..5816077) 1 NC_010322.1 KEGG: pen:PSEEN5241 hypothetical protein; hypothetical protein 5816077 5873015 PputGB1_5201 Pseudomonas putida GB-1 hypothetical protein YP_001671419.1 5815652 R 76869 CDS YP_001671420.1 167036189 5873016 complement(5816116..5817630) 1 NC_010322.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 5817630 5873016 PputGB1_5202 Pseudomonas putida GB-1 threonine dehydratase YP_001671420.1 5816116 R 76869 CDS YP_001671421.1 167036190 5873017 5817764..5818438 1 NC_010322.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5818438 5873017 PputGB1_5203 Pseudomonas putida GB-1 ribose-5-phosphate isomerase A YP_001671421.1 5817764 D 76869 CDS YP_001671422.1 167036191 5873018 complement(5818554..5819456) 1 NC_010322.1 PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5244 hypothetical protein; SdiA-regulated domain-containing protein 5819456 5873018 PputGB1_5204 Pseudomonas putida GB-1 SdiA-regulated domain-containing protein YP_001671422.1 5818554 R 76869 CDS YP_001671423.1 167036192 5873019 complement(5819547..5820464) 1 NC_010322.1 PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5245 hypothetical protein; SdiA-regulated domain-containing protein 5820464 5873019 PputGB1_5205 Pseudomonas putida GB-1 SdiA-regulated domain-containing protein YP_001671423.1 5819547 R 76869 CDS YP_001671424.1 167036193 5873020 complement(5820646..5821311) 1 NC_010322.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pen:PSEEN5246 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 5821311 5873020 PputGB1_5206 Pseudomonas putida GB-1 fumarylacetoacetate (FAA) hydrolase YP_001671424.1 5820646 R 76869 CDS YP_001671425.1 167036194 5873021 complement(5821333..5822730) 1 NC_010322.1 PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN5247 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein 5822730 5873021 PputGB1_5207 Pseudomonas putida GB-1 FAD linked oxidase domain-containing protein YP_001671425.1 5821333 R 76869 CDS YP_001671426.1 167036195 5873022 5822902..5824131 1 NC_010322.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5824131 5873022 PputGB1_5208 Pseudomonas putida GB-1 D-3-phosphoglycerate dehydrogenase YP_001671426.1 5822902 D 76869 CDS YP_001671427.1 167036196 5873023 complement(5824178..5824654) 1 NC_010322.1 KEGG: pen:PSEEN5249 hypothetical protein; hypothetical protein 5824654 5873023 PputGB1_5209 Pseudomonas putida GB-1 hypothetical protein YP_001671427.1 5824178 R 76869 CDS YP_001671428.1 167036197 5873024 5824878..5825369 1 NC_010322.1 KEGG: pen:PSEEN5250 periplasmic binding protein from ABC-type transporter; hypothetical protein 5825369 5873024 PputGB1_5210 Pseudomonas putida GB-1 hypothetical protein YP_001671428.1 5824878 D 76869 CDS YP_001671429.1 167036198 5873025 complement(5825431..5825934) 1 NC_010322.1 PFAM: protein of unknown function DUF523; KEGG: pfo:Pfl_5390 protein of unknown function DUF523; hypothetical protein 5825934 5873025 PputGB1_5211 Pseudomonas putida GB-1 hypothetical protein YP_001671429.1 5825431 R 76869 CDS YP_001671430.1 167036199 5873026 complement(5825921..5826556) 1 NC_010322.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN5252 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 5826556 5873026 PputGB1_5212 Pseudomonas putida GB-1 2OG-Fe(II) oxygenase YP_001671430.1 5825921 R 76869 CDS YP_001671431.1 167036200 5873027 5826667..5827419 1 NC_010322.1 KEGG: pen:PSEEN5253 hypothetical protein; hypothetical protein 5827419 5873027 PputGB1_5213 Pseudomonas putida GB-1 hypothetical protein YP_001671431.1 5826667 D 76869 CDS YP_001671432.1 167036201 5873028 complement(5827420..5828346) 1 NC_010322.1 KEGG: pen:PSEEN5254 lipase; lipase 5828346 5873028 PputGB1_5214 Pseudomonas putida GB-1 lipase YP_001671432.1 5827420 R 76869 CDS YP_001671433.1 167036202 5873029 5828595..5829164 1 NC_010322.1 KEGG: pen:PSEEN5255 hypothetical protein; hypothetical protein 5829164 5873029 PputGB1_5215 Pseudomonas putida GB-1 hypothetical protein YP_001671433.1 5828595 D 76869 CDS YP_001671434.1 167036203 5873030 complement(5829143..5829709) 1 NC_010322.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; hexapaptide repeat-containing transferase 5829709 5873030 PputGB1_5216 Pseudomonas putida GB-1 hexapaptide repeat-containing transferase YP_001671434.1 5829143 R 76869 CDS YP_001671435.1 167036204 5873031 5829797..5832160 1 NC_010322.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN5257 penicillin amidase; peptidase S45 penicillin amidase 5832160 5873031 PputGB1_5217 Pseudomonas putida GB-1 peptidase S45 penicillin amidase YP_001671435.1 5829797 D 76869 CDS YP_001671436.1 167036205 5873032 complement(5832196..5833068) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5258 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5833068 5873032 PputGB1_5218 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671436.1 5832196 R 76869 CDS YP_001671437.1 167036206 5873033 complement(5833065..5833838) 1 NC_010322.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5259 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5833838 5873033 PputGB1_5219 Pseudomonas putida GB-1 ABC transporter-like protein YP_001671437.1 5833065 R 76869 CDS YP_001671438.1 167036207 5873034 complement(5833835..5834494) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5260 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5834494 5873034 PputGB1_5220 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001671438.1 5833835 R 76869 CDS YP_001671439.1 167036208 5873035 complement(5834475..5835140) 1 NC_010322.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5261 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5835140 5873035 PputGB1_5221 Pseudomonas putida GB-1 polar amino acid ABC transporter inner membrane subunit YP_001671439.1 5834475 R 76869 CDS YP_001671440.1 167036209 5873036 complement(5835464..5836249) 1 NC_010322.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN5262 lipoprotein; NLPA lipoprotein 5836249 5873036 PputGB1_5222 Pseudomonas putida GB-1 NLPA lipoprotein YP_001671440.1 5835464 R 76869 CDS YP_001671441.1 167036210 5873037 complement(5836425..5837255) 1 NC_010322.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 5837255 5873037 PputGB1_5223 Pseudomonas putida GB-1 putative sigma-54 specific transcriptional regulator YP_001671441.1 5836425 R 76869 CDS YP_001671442.1 167036211 5873038 complement(5837320..5837901) 1 NC_010322.1 PFAM: protein of unknown function DUF1234; KEGG: pen:PSEEN5264 hypothetical protein; hypothetical protein 5837901 5873038 PputGB1_5224 Pseudomonas putida GB-1 hypothetical protein YP_001671442.1 5837320 R 76869 CDS YP_001671443.1 167036212 5873039 complement(5838096..5838497) 1 NC_010322.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN5278 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 5838497 5873039 PputGB1_5225 Pseudomonas putida GB-1 biopolymer transport protein ExbD/TolR YP_001671443.1 5838096 R 76869 CDS YP_001671444.1 167036213 5873040 complement(5838499..5839218) 1 NC_010322.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5279 biopolymer transport protein ExbB; MotA/TolQ/ExbB proton channel 5839218 5873040 PputGB1_5226 Pseudomonas putida GB-1 MotA/TolQ/ExbB proton channel YP_001671444.1 5838499 R 76869 CDS YP_001671445.1 167036214 5873041 complement(5839249..5840049) 1 NC_010322.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pen:PSEEN5280 TonB-like protein; TonB family protein 5840049 5873041 PputGB1_5227 Pseudomonas putida GB-1 TonB family protein YP_001671445.1 5839249 R 76869 CDS YP_001671446.1 167036215 5873042 complement(5840453..5841442) 1 NC_010322.1 KEGG: pen:PSEEN5281 sulfate/thiosulfate import ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 5841442 5873042 PputGB1_5228 Pseudomonas putida GB-1 sulfate ABC transporter ATPase YP_001671446.1 5840453 R 76869 CDS YP_001671447.1 167036216 5873043 complement(5841446..5842318) 1 NC_010322.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5282 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 5842318 5873043 PputGB1_5229 Pseudomonas putida GB-1 sulfate ABC transporter permease YP_001671447.1 5841446 R 76869 CDS YP_001671448.1 167036217 5873044 complement(5842330..5843148) 1 NC_010322.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5283 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 5843148 5873044 PputGB1_5230 Pseudomonas putida GB-1 sulfate ABC transporter permease YP_001671448.1 5842330 R 76869 CDS YP_001671449.1 167036218 5873045 complement(5843334..5844341) 1 NC_010322.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5284 sulfate/thiosulfate import ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 5844341 5873045 PputGB1_5231 Pseudomonas putida GB-1 sulfate ABC transporter substrate-binding protein YP_001671449.1 5843334 R 76869 CDS YP_001671450.1 167036219 5873046 complement(5844390..5844572) 1 NC_010322.1 KEGG: pfl:PFL_0191 hypothetical protein; hypothetical protein 5844572 5873046 PputGB1_5232 Pseudomonas putida GB-1 hypothetical protein YP_001671450.1 5844390 R 76869 CDS YP_001671451.1 167036220 5873047 complement(5844767..5847829) 1 NC_010322.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN5287 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 5847829 5873047 PputGB1_5233 Pseudomonas putida GB-1 acriflavin resistance protein YP_001671451.1 5844767 R 76869 CDS YP_001671452.1 167036221 5873048 complement(5847826..5848893) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5288 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 5848893 5873048 PputGB1_5234 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001671452.1 5847826 R 76869 CDS YP_001671453.1 167036222 5873049 complement(5848890..5849978) 1 NC_010322.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5289 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 5849978 5873049 PputGB1_5235 Pseudomonas putida GB-1 RND family efflux transporter MFP subunit YP_001671453.1 5848890 R 76869 CDS YP_001671454.1 167036223 5873050 5850283..5850738 1 NC_010322.1 KEGG: pen:PSEEN3227 hypothetical protein; hypothetical protein 5850738 5873050 PputGB1_5236 Pseudomonas putida GB-1 hypothetical protein YP_001671454.1 5850283 D 76869 CDS YP_001671455.1 167036224 5873051 complement(5850846..5851739) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5291 putrescine ABC transporter, permease protein; ornithine carbamoyltransferase 5851739 5873051 PputGB1_5237 Pseudomonas putida GB-1 ornithine carbamoyltransferase YP_001671455.1 5850846 R 76869 CDS YP_001671456.1 167036225 5873052 complement(5851736..5852656) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5292 putrescine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5852656 5873052 PputGB1_5238 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001671456.1 5851736 R 76869 CDS YP_001671457.1 167036226 5873053 complement(5852653..5853795) 1 NC_010322.1 KEGG: pen:PSEEN5293 puttaive putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 5853795 5873053 PputGB1_5239 Pseudomonas putida GB-1 spermidine/putrescine ABC transporter ATPase YP_001671457.1 5852653 R 76869 CDS YP_001671458.1 167036227 5873054 complement(5853856..5854950) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5294 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 5854950 5873054 PputGB1_5240 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671458.1 5853856 R 76869 CDS YP_001671459.1 167036228 5873055 complement(5855109..5856206) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5295 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 5856206 5873055 PputGB1_5241 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671459.1 5855109 R 76869 CDS YP_001671460.1 167036229 5873056 complement(5856377..5857738) 1 NC_010322.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase 5857738 5873056 PputGB1_5242 Pseudomonas putida GB-1 putative aminotransferase YP_001671460.1 5856377 R 76869 CDS YP_001671461.1 167036230 5873057 complement(5857787..5859145) 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5297 glutamine synthetase; glutamate--putrescine ligase 5859145 5873057 PputGB1_5243 Pseudomonas putida GB-1 glutamate--putrescine ligase YP_001671461.1 5857787 R 76869 CDS YP_001671462.1 167036231 5873058 5859720..5861096 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5299 glutamine synthetase; glutamate--putrescine ligase 5861096 5873058 PputGB1_5244 Pseudomonas putida GB-1 glutamate--putrescine ligase YP_001671462.1 5859720 D 76869 CDS YP_001671463.1 167036232 5873059 complement(5861248..5862546) 1 NC_010322.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 5862546 5873059 PputGB1_5245 Pseudomonas putida GB-1 N-acetylglutamate synthase YP_001671463.1 5861248 R 76869 CDS YP_001671464.1 167036233 5873060 complement(5862671..5863813) 1 NC_010322.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 5863813 5873060 PputGB1_5246 Pseudomonas putida GB-1 acetylornithine deacetylase YP_001671464.1 5862671 R 76869 CDS YP_001671465.1 167036234 5873061 5863931..5865298 1 NC_010322.1 PFAM: adenylate cyclase; KEGG: pen:PSEEN5302 adenylate cyclase; adenylate cyclase 5865298 5873061 PputGB1_5247 Pseudomonas putida GB-1 adenylate cyclase YP_001671465.1 5863931 D 76869 CDS YP_001671466.1 167036235 5873062 complement(5865472..5865942) 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5303 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5865942 5873062 PputGB1_5248 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001671466.1 5865472 R 76869 CDS YP_001671467.1 167036236 5873063 5866069..5866374 1 NC_010322.1 KEGG: pen:PSEEN5304 hypothetical protein; hypothetical protein 5866374 5873063 PputGB1_5249 Pseudomonas putida GB-1 hypothetical protein YP_001671467.1 5866069 D 76869 CDS YP_001671468.1 167036237 5873064 5866485..5868158 1 NC_010322.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pen:PSEEN5305 type II secretion system protein E; type II secretion system protein E 5868158 5873064 PputGB1_5250 Pseudomonas putida GB-1 type II secretion system protein E YP_001671468.1 5866485 D 76869 CDS YP_001671469.1 167036238 5873065 5868247..5868561 1 NC_010322.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5306 hypothetical protein; hypothetical protein 5868561 5873065 PputGB1_5251 Pseudomonas putida GB-1 hypothetical protein YP_001671469.1 5868247 D 76869 CDS YP_001671470.1 167036239 5873066 complement(5868613..5871486) 1 NC_010322.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 5871486 5873066 PputGB1_5252 Pseudomonas putida GB-1 glycine dehydrogenase YP_001671470.1 5868613 R 76869 CDS YP_001671471.1 167036240 5873067 complement(5871619..5872002) 1 NC_010322.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 5872002 5873067 PputGB1_5253 Pseudomonas putida GB-1 glycine cleavage system protein H YP_001671471.1 5871619 R 76869 CDS YP_001671472.1 167036241 5873068 complement(5872054..5873136) 1 NC_010322.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 5873136 gcvT 5873068 gcvT Pseudomonas putida GB-1 glycine cleavage system aminomethyltransferase T YP_001671472.1 5872054 R 76869 CDS YP_001671473.1 167036242 5873069 complement(5873260..5874882) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5310 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5874882 5873069 PputGB1_5255 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001671473.1 5873260 R 76869 CDS YP_001671474.1 167036243 5873070 complement(5875043..5876044) 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5311 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5876044 5873070 PputGB1_5256 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671474.1 5875043 R 76869 CDS YP_001671475.1 167036244 5873071 complement(5876263..5877486) 1 NC_010322.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 5877486 5873071 PputGB1_5257 Pseudomonas putida GB-1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_001671475.1 5876263 R 76869 CDS YP_001671476.1 167036245 5873072 complement(5877490..5877972) 1 NC_010322.1 KEGG: pen:PSEEN5313 hypothetical protein; hypothetical protein 5877972 5873072 PputGB1_5258 Pseudomonas putida GB-1 hypothetical protein YP_001671476.1 5877490 R 76869 CDS YP_001671477.1 167036246 5873073 complement(5877969..5879168) 1 NC_010322.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 5879168 5873073 PputGB1_5259 Pseudomonas putida GB-1 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001671477.1 5877969 R 76869 CDS YP_001671478.1 167036247 5873074 complement(5879165..5880499) 1 NC_010322.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pen:PSEEN5315 aminopeptidase P; peptidase M24 5880499 5873074 PputGB1_5260 Pseudomonas putida GB-1 peptidase M24 YP_001671478.1 5879165 R 76869 CDS YP_001671479.1 167036248 5873075 complement(5880521..5881075) 1 NC_010322.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 5881075 5873075 PputGB1_5261 Pseudomonas putida GB-1 hypothetical protein YP_001671479.1 5880521 R 76869 CDS YP_001671480.1 167036249 5873076 5881221..5881439 1 NC_010322.1 KEGG: pen:PSEEN5317 hypothetical protein; hypothetical protein 5881439 5873076 PputGB1_5262 Pseudomonas putida GB-1 hypothetical protein YP_001671480.1 5881221 D 76869 CDS YP_001671481.1 167036250 5873077 5881436..5881756 1 NC_010322.1 PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5318 hypothetical protein; hypothetical protein 5881756 5873077 PputGB1_5263 Pseudomonas putida GB-1 hypothetical protein YP_001671481.1 5881436 D 76869 CDS YP_001671482.1 167036251 5873079 5882039..5882647 1 NC_010322.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pen:PSEEN5319 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5882647 5873079 PputGB1_5264 Pseudomonas putida GB-1 5-formyltetrahydrofolate cyclo-ligase YP_001671482.1 5882039 D 76869 CDS YP_001671483.1 167036252 5873080 complement(5882666..5882818) 1 NC_010322.1 KEGG: pen:PSEEN5320 hypothetical protein; hypothetical protein 5882818 5873080 PputGB1_5265 Pseudomonas putida GB-1 hypothetical protein YP_001671483.1 5882666 R 76869 CDS YP_001671484.1 167036253 5873081 5882998..5883459 1 NC_010322.1 PFAM: protein of unknown function DUF55; KEGG: pfo:Pfl_5440 protein of unknown function DUF589; hypothetical protein 5883459 5873081 PputGB1_5266 Pseudomonas putida GB-1 hypothetical protein YP_001671484.1 5882998 D 76869 CDS YP_001671485.1 167036254 5873082 5883543..5884502 1 NC_010322.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5322 membrane fusion protein; secretion protein HlyD family protein 5884502 5873082 PputGB1_5267 Pseudomonas putida GB-1 secretion protein HlyD family protein YP_001671485.1 5883543 D 76869 CDS YP_001671486.1 167036255 5873083 5884499..5887219 1 NC_010322.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: pen:PSEEN5323 ribosome-associated ATPase, ATP-binding domain (N-terminal); ABC transporter-like protein 5887219 5873083 PputGB1_5268 Pseudomonas putida GB-1 ABC transporter-like protein YP_001671486.1 5884499 D 76869 CDS YP_001671487.1 167036256 5873084 5887221..5888333 1 NC_010322.1 PFAM: ABC-2 type transporter; KEGG: pen:PSEEN5324 ABC transporter, permease protein; ABC transporter 5888333 5873084 PputGB1_5269 Pseudomonas putida GB-1 ABC transporter YP_001671487.1 5887221 D 76869 CDS YP_001671488.1 167036257 5873085 complement(5888427..5888831) 1 NC_010322.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pen:PSEEN5325 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 5888831 5873085 PputGB1_5270 Pseudomonas putida GB-1 flagellar basal body-associated protein FliL-like protein YP_001671488.1 5888427 R 76869 CDS YP_001671489.1 167036258 5873086 5888989..5889966 1 NC_010322.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 5889966 5873086 PputGB1_5271 Pseudomonas putida GB-1 alcohol dehydrogenase YP_001671489.1 5888989 D 76869 CDS YP_001671490.1 167036259 5873087 complement(5890020..5890670) 1 NC_010322.1 PFAM: ChaC family protein; KEGG: pen:PSEEN5327 transporter, ChaC-related; ChaC family protein 5890670 5873087 PputGB1_5272 Pseudomonas putida GB-1 ChaC family protein YP_001671490.1 5890020 R 76869 CDS YP_001671491.1 167036260 5873088 complement(5890917..5891885) 1 NC_010322.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 5891885 5873088 PputGB1_5273 Pseudomonas putida GB-1 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_001671491.1 5890917 R 76869 CDS YP_001671492.1 167036261 5873089 complement(5891885..5893351) 1 NC_010322.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pen:PSEEN5330 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase 5893351 5873089 PputGB1_5274 Pseudomonas putida GB-1 UbiD family decarboxylase YP_001671492.1 5891885 R 76869 CDS YP_001671493.1 167036262 5873090 complement(5893475..5894734) 1 NC_010322.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5894734 rho 5873090 rho Pseudomonas putida GB-1 transcription termination factor Rho YP_001671493.1 5893475 R 76869 CDS YP_001671494.1 167036263 5873091 complement(5894962..5895288) 1 NC_010322.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pfo:Pfl_5457 thioredoxin; thioredoxin 5895288 5873091 PputGB1_5276 Pseudomonas putida GB-1 thioredoxin YP_001671494.1 5894962 R 76869 CDS YP_001671495.1 167036264 5873092 5895545..5897047 1 NC_010322.1 PFAM: Ppx/GppA phosphatase; KEGG: pen:PSEEN5335 exopolyphosphatase (ExopolyPase) (metaphosphatase); Ppx/GppA phosphatase 5897047 5873092 PputGB1_5277 Pseudomonas putida GB-1 Ppx/GppA phosphatase YP_001671495.1 5895545 D 76869 CDS YP_001671496.1 167036265 5873093 complement(5897034..5899277) 1 NC_010322.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 5899277 5873093 PputGB1_5278 Pseudomonas putida GB-1 polyphosphate kinase YP_001671496.1 5897034 R 76869 CDS YP_001671497.1 167036266 5873095 complement(5899968..5901263) 1 NC_010322.1 PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN5339 hypothetical protein; fatty acid hydroxylase 5901263 5873095 PputGB1_5280 Pseudomonas putida GB-1 fatty acid hydroxylase YP_001671497.1 5899968 R 76869 CDS YP_001671498.1 167036267 5873096 5901376..5902035 1 NC_010322.1 PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN5340 enhancing lycopene biosynthesis protein 2; isoprenoid biosynthesis protein with amidotransferase-like domain 5902035 5873096 PputGB1_5281 Pseudomonas putida GB-1 isoprenoid biosynthesis protein with amidotransferase-like domain YP_001671498.1 5901376 D 76869 CDS YP_001671499.1 167036268 5873097 complement(5902132..5902584) 1 NC_010322.1 PFAM: protein of unknown function DUF188; KEGG: pen:PSEEN5341 hypothetical protein; hypothetical protein 5902584 5873097 PputGB1_5282 Pseudomonas putida GB-1 hypothetical protein YP_001671499.1 5902132 R 76869 CDS YP_001671500.1 167036269 5873098 5902751..5905606 1 NC_010322.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5905606 cyaA 5873098 cyaA Pseudomonas putida GB-1 adenylate cyclase YP_001671500.1 5902751 D 76869 CDS YP_001671501.1 167036270 5873099 complement(5905720..5906130) 1 NC_010322.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 5906130 5873099 PputGB1_5284 Pseudomonas putida GB-1 nucleoside diphosphate kinase regulator YP_001671501.1 5905720 R 76869 CDS YP_001671502.1 167036271 5873100 complement(5906277..5906501) 1 NC_010322.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN5362 hypothetical protein; hypothetical protein 5906501 5873100 PputGB1_5285 Pseudomonas putida GB-1 hypothetical protein YP_001671502.1 5906277 R 76869 CDS YP_001671503.1 167036272 5873101 complement(5906503..5906835) 1 NC_010322.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 5906835 cyaY 5873101 cyaY Pseudomonas putida GB-1 frataxin-like protein YP_001671503.1 5906503 R 76869 CDS YP_001671504.1 167036273 5873102 5907026..5907238 1 NC_010322.1 KEGG: pen:PSEEN5364 lipoprotein Lppl; lipoprotein Lppl 5907238 5873102 PputGB1_5287 Pseudomonas putida GB-1 lipoprotein Lppl YP_001671504.1 5907026 D 76869 CDS YP_001671505.1 167036274 5873103 5907248..5908495 1 NC_010322.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN5365 diaminopimelate decarboxylase; diaminopimelate decarboxylase 5908495 5873103 PputGB1_5288 Pseudomonas putida GB-1 diaminopimelate decarboxylase YP_001671505.1 5907248 D 76869 CDS YP_001671506.1 167036275 5873104 5908500..5909330 1 NC_010322.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5909330 dapF 5873104 dapF Pseudomonas putida GB-1 diaminopimelate epimerase YP_001671506.1 5908500 D 76869 CDS YP_001671507.1 167036276 5873105 5909344..5910054 1 NC_010322.1 PFAM: protein of unknown function DUF484; KEGG: pen:PSEEN5367 hypothetical protein; hypothetical protein 5910054 5873105 PputGB1_5290 Pseudomonas putida GB-1 hypothetical protein YP_001671507.1 5909344 D 76869 CDS YP_001671508.1 167036277 5873106 5910054..5910953 1 NC_010322.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5910953 xerC 5873106 xerC Pseudomonas putida GB-1 site-specific tyrosine recombinase XerC YP_001671508.1 5910054 D 76869 CDS YP_001671509.1 167036278 5873107 5910950..5911645 1 NC_010322.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5369 haloacid dehalogenase-like hydrolase; HAD family hydrolase 5911645 5873107 PputGB1_5292 Pseudomonas putida GB-1 HAD family hydrolase YP_001671509.1 5910950 D 76869 CDS YP_001671510.1 167036279 5873108 complement(5911730..5912059) 1 NC_010322.1 KEGG: pen:PSEEN5374 hypothetical protein; hypothetical protein 5912059 5873108 PputGB1_5293 Pseudomonas putida GB-1 hypothetical protein YP_001671510.1 5911730 R 76869 CDS YP_001671511.1 167036280 5873109 complement(5912489..5913820) 1 NC_010322.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN5375 ammonium transporter; ammonium transporter 5913820 5873109 PputGB1_5294 Pseudomonas putida GB-1 ammonium transporter YP_001671511.1 5912489 R 76869 CDS YP_001671512.1 167036281 5873110 complement(5913867..5914205) 1 NC_010322.1 PFAM: nitrogen regulatory protein P-II; KEGG: pen:PSEEN5376 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 5914205 5873110 PputGB1_5295 Pseudomonas putida GB-1 nitrogen regulatory protein P-II YP_001671512.1 5913867 R 76869 CDS YP_001671513.1 167036282 5873111 5914521..5914838 1 NC_010322.1 PFAM: protein of unknown function DUF526; KEGG: pen:PSEEN5377 hypothetical protein; hypothetical protein 5914838 5873111 PputGB1_5296 Pseudomonas putida GB-1 hypothetical protein YP_001671513.1 5914521 D 76869 CDS YP_001671514.1 167036283 5873112 5914839..5915192 1 NC_010322.1 PFAM: AIG2 family protein; KEGG: pfl:PFL_5193 hypothetical protein; AIG2 family protein 5915192 5873112 PputGB1_5297 Pseudomonas putida GB-1 AIG2 family protein YP_001671514.1 5914839 D 76869 CDS YP_001671515.1 167036284 5873113 5915231..5915659 1 NC_010322.1 PFAM: TOBE domain protein; KEGG: pen:PSEEN5378 molybdenum-pterin binding protein; TOBE domain-containing protein 5915659 5873113 PputGB1_5298 Pseudomonas putida GB-1 TOBE domain-containing protein YP_001671515.1 5915231 D 76869 CDS YP_001671516.1 167036285 5873114 complement(5915689..5917683) 1 NC_010322.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN5383 hypothetical protein; Sel1 domain-containing protein 5917683 5873114 PputGB1_5299 Pseudomonas putida GB-1 Sel1 domain-containing protein YP_001671516.1 5915689 R 76869 CDS YP_001671517.1 167036286 5873115 5917941..5919431 1 NC_010322.1 KEGG: pen:PSEEN5385 magnesium chelatase subunit D; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 5919431 5873115 PputGB1_5300 Pseudomonas putida GB-1 Mg chelatase subunit ChlI YP_001671517.1 5917941 D 76869 CDS YP_001671518.1 167036287 5873116 5919607..5921394 1 NC_010322.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pen:PSEEN5389 glutathione-regulated potassium-proton antiporter; potassium efflux system protein 5921394 5873116 PputGB1_5301 Pseudomonas putida GB-1 potassium efflux system protein YP_001671518.1 5919607 D 76869 CDS YP_001671519.1 167036288 5873117 5921786..5922079 1 NC_010322.1 KEGG: pen:PSEEN5391 hypothetical protein; hypothetical protein 5922079 5873117 PputGB1_5302 Pseudomonas putida GB-1 hypothetical protein YP_001671519.1 5921786 D 76869 CDS YP_001671520.1 167036289 5873118 complement(5922195..5922824) 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase 5922824 5873118 PputGB1_5303 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001671520.1 5922195 R 76869 CDS YP_001671521.1 167036290 5873119 5922960..5923871 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5393 transcriptional regulator, LysR family; LysR family transcriptional regulator 5923871 5873119 PputGB1_5304 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671521.1 5922960 D 76869 CDS YP_001671522.1 167036291 5873120 complement(5923948..5925930) 1 NC_010322.1 PFAM: Amidohydrolase 3; KEGG: pen:PSEEN5394 puttaive metal-dependent hydrolase; amidohydrolase family; amidohydrolase 3 5925930 5873120 PputGB1_5305 Pseudomonas putida GB-1 amidohydrolase 3 YP_001671522.1 5923948 R 76869 CDS YP_001671523.1 167036292 5873121 complement(5926097..5926405) 1 NC_010322.1 KEGG: pen:PSEEN5396 hypothetical protein; hypothetical protein 5926405 5873121 PputGB1_5306 Pseudomonas putida GB-1 hypothetical protein YP_001671523.1 5926097 R 76869 CDS YP_001671524.1 167036293 5873122 complement(5926522..5927151) 1 NC_010322.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase 5927151 5873122 PputGB1_5307 Pseudomonas putida GB-1 isochorismatase hydrolase YP_001671524.1 5926522 R 76869 CDS YP_001671525.1 167036294 5873123 5927285..5928811 1 NC_010322.1 PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: pen:PSEEN5400 small-conductance mechanosensitive channel; cyclic nucleotide-regulated small mechanosensitive ion channel 5928811 5873123 PputGB1_5308 Pseudomonas putida GB-1 cyclic nucleotide-regulated small mechanosensitive ion channel YP_001671525.1 5927285 D 76869 CDS YP_001671526.1 167036295 5873124 complement(5928858..5930144) 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5401 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 5930144 5873124 PputGB1_5309 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001671526.1 5928858 R 76869 CDS YP_001671527.1 167036296 5873125 complement(5930332..5931822) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN5402 probable aldehyde dehydrogenase; aldehyde dehydrogenase 5931822 5873125 PputGB1_5310 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001671527.1 5930332 R 76869 CDS YP_001671528.1 167036297 5873126 5931959..5932849 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5404 transcriptional regulator, LysR family; LysR family transcriptional regulator 5932849 5873126 PputGB1_5311 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671528.1 5931959 D 76869 CDS YP_001671529.1 167036298 5873127 5932990..5934384 1 NC_010322.1 PFAM: protein of unknown function DUF1338; KEGG: pen:PSEEN5405 hypothetical protein; hypothetical protein 5934384 5873127 PputGB1_5312 Pseudomonas putida GB-1 hypothetical protein YP_001671529.1 5932990 D 76869 CDS YP_001671530.1 167036299 5873128 complement(5934436..5935362) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5407 transcriptional regulator, LysR family; LysR family transcriptional regulator 5935362 5873128 PputGB1_5313 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671530.1 5934436 R 76869 CDS YP_001671531.1 167036300 5873129 5935520..5936908 1 NC_010322.1 functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 5936908 5873129 PputGB1_5314 Pseudomonas putida GB-1 multidrug efflux protein NorA YP_001671531.1 5935520 D 76869 CDS YP_001671532.1 167036301 5873130 complement(5936980..5938644) 1 NC_010322.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN5409 diguanylate cyclase (GGDEF domain); diguanylate cyclase/phosphodiesterase 5938644 5873130 PputGB1_5315 Pseudomonas putida GB-1 diguanylate cyclase/phosphodiesterase YP_001671532.1 5936980 R 76869 CDS YP_001671533.1 167036302 5873131 5938938..5940947 1 NC_010322.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN5410 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep 5940947 5873131 PputGB1_5316 Pseudomonas putida GB-1 ATP-dependent DNA helicase Rep YP_001671533.1 5938938 D 76869 CDS YP_001671534.1 167036303 5873132 5941012..5941584 1 NC_010322.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 5941584 5873132 PputGB1_5317 Pseudomonas putida GB-1 xanthine phosphoribosyltransferase YP_001671534.1 5941012 D 76869 CDS YP_001671535.1 167036304 5873133 complement(5941707..5943563) 1 NC_010322.1 KEGG: pen:PSEEN5412 hypothetical protein; hypothetical protein 5943563 5873133 PputGB1_5318 Pseudomonas putida GB-1 hypothetical protein YP_001671535.1 5941707 R 76869 CDS YP_001671536.1 167036305 5873134 complement(5943729..5944151) 1 NC_010322.1 KEGG: pen:PSEEN5413 cytochrome c5; cytochrome c5 5944151 5873134 PputGB1_5319 Pseudomonas putida GB-1 cytochrome c5 YP_001671536.1 5943729 R 76869 CDS YP_001671537.1 167036306 5873135 complement(5944288..5944836) 1 NC_010322.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN5414 transcriptional regulator; XRE family transcriptional regulator 5944836 5873135 PputGB1_5320 Pseudomonas putida GB-1 XRE family transcriptional regulator YP_001671537.1 5944288 R 76869 CDS YP_001671538.1 167036307 5873136 complement(5944946..5946019) 1 NC_010322.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 5946019 dadX 5873136 dadX Pseudomonas putida GB-1 alanine racemase YP_001671538.1 5944946 R 76869 CDS YP_001671539.1 167036308 5873137 complement(5946166..5947470) 1 NC_010322.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 5947470 5873137 PputGB1_5322 Pseudomonas putida GB-1 D-amino acid dehydrogenase small subunit YP_001671539.1 5946166 R 76869 CDS YP_001671540.1 167036309 5873138 5947627..5948115 1 NC_010322.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5417 leucine-responsive regulatory protein; AsnC family transcriptional regulator 5948115 5873138 PputGB1_5323 Pseudomonas putida GB-1 AsnC family transcriptional regulator YP_001671540.1 5947627 D 76869 CDS YP_001671541.1 167036310 5873139 complement(5948118..5948471) 1 NC_010322.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5418 hypothetical protein; hypothetical protein 5948471 5873139 PputGB1_5324 Pseudomonas putida GB-1 hypothetical protein YP_001671541.1 5948118 R 76869 CDS YP_001671542.1 167036311 5873140 5948619..5949911 1 NC_010322.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5419 oxidoreductase; D-amino acid dehydrogenase; FAD dependent oxidoreductase 5949911 5873140 PputGB1_5325 Pseudomonas putida GB-1 FAD dependent oxidoreductase YP_001671542.1 5948619 D 76869 CDS YP_001671543.1 167036312 5873141 complement(5950068..5950298) 1 NC_010322.1 KEGG: pen:PSEEN5420 hypothetical protein; hypothetical protein 5950298 5873141 PputGB1_5326 Pseudomonas putida GB-1 hypothetical protein YP_001671543.1 5950068 R 76869 CDS YP_001671544.1 167036313 5873142 5950417..5951907 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5421 transcriptional regulator, GntR family; transcriptional regulator 5951907 5873142 PputGB1_5327 Pseudomonas putida GB-1 transcriptional regulator YP_001671544.1 5950417 D 76869 CDS YP_001671545.1 167036314 5873143 5951968..5953521 1 NC_010322.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN5422 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 5953521 5873143 PputGB1_5328 Pseudomonas putida GB-1 phospholipase D/transphosphatidylase YP_001671545.1 5951968 D 76869 CDS YP_001671546.1 167036315 5873144 complement(5953561..5954700) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5423 major facilitator family transporter; major facilitator superfamily transporter 5954700 5873144 PputGB1_5329 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001671546.1 5953561 R 76869 CDS YP_001671547.1 167036316 5873145 complement(5954805..5956298) 1 NC_010322.1 PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN5424 aldehyde dehydrogenase; aldehyde dehydrogenase 5956298 5873145 PputGB1_5330 Pseudomonas putida GB-1 aldehyde dehydrogenase YP_001671547.1 5954805 R 76869 CDS YP_001671548.1 167036317 5873146 5956495..5956854 1 NC_010322.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN5425 hypothetical protein; hypothetical protein 5956854 5873146 PputGB1_5331 Pseudomonas putida GB-1 hypothetical protein YP_001671548.1 5956495 D 76869 CDS YP_001671549.1 167036318 5873147 complement(5956925..5957080) 1 NC_010322.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 5957080 rpmG 5873147 rpmG Pseudomonas putida GB-1 50S ribosomal protein L33 YP_001671549.1 5956925 R 76869 CDS YP_001671550.1 167036319 5873148 complement(5957092..5957328) 1 NC_010322.1 required for 70S ribosome assembly; 50S ribosomal protein L28 5957328 rpmB 5873148 rpmB Pseudomonas putida GB-1 50S ribosomal protein L28 YP_001671550.1 5957092 R 76869 CDS YP_001671551.1 167036320 5873149 5957690..5959297 1 NC_010322.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN5430 periplasmic binding protein; extracellular solute-binding protein 5959297 5873149 PputGB1_5334 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671551.1 5957690 D 76869 CDS YP_001671552.1 167036321 5873150 complement(5959359..5960039) 1 NC_010322.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 5960039 radC 5873150 radC Pseudomonas putida GB-1 DNA repair protein RadC YP_001671552.1 5959359 R 76869 CDS YP_001671553.1 167036322 5873151 5960168..5961379 1 NC_010322.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5961379 5873151 PputGB1_5336 Pseudomonas putida GB-1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001671553.1 5960168 D 76869 CDS YP_001671554.1 167036323 5873152 5961385..5961840 1 NC_010322.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 5961840 dut 5873152 dut Pseudomonas putida GB-1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001671554.1 5961385 D 76869 CDS YP_001671555.1 167036324 5873153 5961952..5963352 1 NC_010322.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pen:PSEEN5434 phosphomannomutase; phosphomannomutase 5963352 5873153 PputGB1_5338 Pseudomonas putida GB-1 phosphomannomutase YP_001671555.1 5961952 D 76869 CDS YP_001671556.1 167036325 5873154 5963383..5964288 1 NC_010322.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 5964288 5873154 PputGB1_5339 Pseudomonas putida GB-1 acetylglutamate kinase YP_001671556.1 5963383 D 76869 CDS YP_001671557.1 167036326 5873155 complement(5964368..5965009) 1 NC_010322.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 5965009 pyrE 5873155 pyrE Pseudomonas putida GB-1 orotate phosphoribosyltransferase YP_001671557.1 5964368 R 76869 CDS YP_001671558.1 167036327 5873156 5965090..5965869 1 NC_010322.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN5437 catabolite repression control protein Crc; exodeoxyribonuclease III Xth 5965869 5873156 PputGB1_5341 Pseudomonas putida GB-1 exodeoxyribonuclease III Xth YP_001671558.1 5965090 D 76869 CDS YP_001671559.1 167036328 5873157 complement(5965931..5966653) 1 NC_010322.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 5966653 rph 5873157 rph Pseudomonas putida GB-1 ribonuclease PH YP_001671559.1 5965931 R 76869 CDS YP_001671560.1 167036329 5873158 5966882..5967745 1 NC_010322.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pen:PSEEN5440 hypothetical protein; hypothetical protein 5967745 5873158 PputGB1_5343 Pseudomonas putida GB-1 hypothetical protein YP_001671560.1 5966882 D 76869 CDS YP_001671561.1 167036330 5873159 5967759..5968379 1 NC_010322.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 5968379 gmk 5873159 gmk Pseudomonas putida GB-1 guanylate kinase YP_001671561.1 5967759 D 76869 CDS YP_001671562.1 167036331 5873160 complement(5968495..5970036) 1 NC_010322.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5442 amino acid transporter; amino acid permease-associated protein 5970036 5873160 PputGB1_5345 Pseudomonas putida GB-1 amino acid permease-associated protein YP_001671562.1 5968495 R 76869 CDS YP_001671563.1 167036332 5873161 complement(5970156..5970923) 1 NC_010322.1 PFAM: peptidase C26; KEGG: pen:PSEEN5443 glutamine amidotransferase; peptidase C26 5970923 5873161 PputGB1_5346 Pseudomonas putida GB-1 peptidase C26 YP_001671563.1 5970156 R 76869 CDS YP_001671564.1 167036333 5873162 complement(5970928..5972310) 1 NC_010322.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5444 glutamine synthetase; glutamate--putrescine ligase 5972310 5873162 PputGB1_5347 Pseudomonas putida GB-1 glutamate--putrescine ligase YP_001671564.1 5970928 R 76869 CDS YP_001671565.1 167036334 5873163 5972516..5973388 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5445 transcriptional regulator, LysR family; LysR family transcriptional regulator 5973388 5873163 PputGB1_5348 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671565.1 5972516 D 76869 CDS YP_001671566.1 167036335 5873164 5973629..5973892 1 NC_010322.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 5973892 rpoZ 5873164 rpoZ Pseudomonas putida GB-1 DNA-directed RNA polymerase subunit omega YP_001671566.1 5973629 D 76869 CDS YP_001671567.1 167036336 5873165 5973952..5976060 1 NC_010322.1 KEGG: pen:PSEEN5447 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 5976060 5873165 PputGB1_5350 Pseudomonas putida GB-1 (p)ppGpp synthetase I SpoT/RelA YP_001671567.1 5973952 D 76869 CDS YP_001671568.1 167036337 5873166 5976084..5976464 1 NC_010322.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pfo:Pfl_5552 YjgF-like protein; endoribonuclease L-PSP 5976464 5873166 PputGB1_5351 Pseudomonas putida GB-1 endoribonuclease L-PSP YP_001671568.1 5976084 D 76869 CDS YP_001671569.1 167036338 5873167 5976461..5977255 1 NC_010322.1 KEGG: pen:PSEEN5449 lipoprotein; lipoprotein 5977255 5873167 PputGB1_5352 Pseudomonas putida GB-1 lipoprotein YP_001671569.1 5976461 D 76869 CDS YP_001671570.1 167036339 5873168 complement(5977397..5978266) 1 NC_010322.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: pen:PSEEN5450 hypothetical protein; NAD-dependent epimerase/dehydratase 5978266 5873168 PputGB1_5353 Pseudomonas putida GB-1 NAD-dependent epimerase/dehydratase YP_001671570.1 5977397 R 76869 CDS YP_001671571.1 167036340 5873169 5978457..5979437 1 NC_010322.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB; tonB-system energizer ExbB 5979437 5873169 PputGB1_5354 Pseudomonas putida GB-1 tonB-system energizer ExbB YP_001671571.1 5978457 D 76869 CDS YP_001671572.1 167036341 5873170 5979441..5979869 1 NC_010322.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 5979869 5873170 PputGB1_5355 Pseudomonas putida GB-1 biopolymer transport protein ExbD YP_001671572.1 5979441 D 76869 CDS YP_001671573.1 167036342 5873171 5979866..5980597 1 NC_010322.1 TIGRFAM: TonB family protein; KEGG: pen:PSEEN5453 ferric siderophore transport system, periplasmic binding protein TonB; TonB family protein 5980597 5873171 PputGB1_5356 Pseudomonas putida GB-1 TonB family protein YP_001671573.1 5979866 D 76869 CDS YP_001671574.1 167036343 5873172 5980692..5981618 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5454 transcriptional regulator, LysR family; LysR family transcriptional regulator 5981618 5873172 PputGB1_5357 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671574.1 5980692 D 76869 CDS YP_001671575.1 167036344 5873173 5981622..5983700 1 NC_010322.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 5983700 5873173 PputGB1_5358 Pseudomonas putida GB-1 ATP-dependent DNA helicase RecG YP_001671575.1 5981622 D 76869 CDS YP_001671576.1 167036345 5873174 5983779..5985182 1 NC_010322.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN5456 hypothetical protein; putative signal transduction protein 5985182 5873174 PputGB1_5359 Pseudomonas putida GB-1 putative signal transduction protein YP_001671576.1 5983779 D 76869 CDS YP_001671577.1 167036346 5873175 complement(5985216..5985590) 1 NC_010322.1 KEGG: pen:PSEEN5457 hypothetical protein; hypothetical protein 5985590 5873175 PputGB1_5360 Pseudomonas putida GB-1 hypothetical protein YP_001671577.1 5985216 R 76869 CDS YP_001671578.1 167036347 5873176 complement(5985738..5986043) 1 NC_010322.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN5458 DNA-binding protein HU-alpha; histone family protein DNA-binding protein 5986043 5873176 PputGB1_5361 Pseudomonas putida GB-1 histone family protein DNA-binding protein YP_001671578.1 5985738 R 76869 CDS YP_001671579.1 167036348 5873177 complement(5986231..5987379) 1 NC_010322.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5459 rubredoxin-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5987379 5873177 PputGB1_5362 Pseudomonas putida GB-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001671579.1 5986231 R 76869 CDS YP_001671580.1 167036349 5873178 complement(5987396..5987563) 1 NC_010322.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pen:PSEEN5460 rubredoxin; rubredoxin-type Fe(Cys)4 protein 5987563 5873178 PputGB1_5363 Pseudomonas putida GB-1 rubredoxin-type Fe(Cys)4 protein YP_001671580.1 5987396 R 76869 CDS YP_001671581.1 167036350 5873179 5987737..5988294 1 NC_010322.1 PFAM: Chorismate lyase; KEGG: pen:PSEEN5461 chorismate-pyruvate lyase; chorismate lyase 5988294 5873179 PputGB1_5364 Pseudomonas putida GB-1 chorismate lyase YP_001671581.1 5987737 D 76869 CDS YP_001671582.1 167036351 5873180 5988294..5989184 1 NC_010322.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 5989184 ubiA 5873180 ubiA Pseudomonas putida GB-1 4-hydroxybenzoate octaprenyltransferase YP_001671582.1 5988294 D 76869 CDS YP_001671583.1 167036352 5873181 complement(5989218..5989562) 1 NC_010322.1 PFAM: Secreted repeat of unknown function; KEGG: pen:PSEEN5463 hypothetical protein; hypothetical protein 5989562 5873181 PputGB1_5366 Pseudomonas putida GB-1 hypothetical protein YP_001671583.1 5989218 R 76869 CDS YP_001671584.1 167036353 5873182 5989759..5990448 1 NC_010322.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN5464 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 5990448 5873182 PputGB1_5367 Pseudomonas putida GB-1 two component transcriptional regulator YP_001671584.1 5989759 D 76869 CDS YP_001671585.1 167036354 5873183 5990497..5991804 1 NC_010322.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: pen:PSEEN5465 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 5991804 5873183 PputGB1_5368 Pseudomonas putida GB-1 PAS/PAC sensor signal transduction histidine kinase YP_001671585.1 5990497 D 76869 CDS YP_001671586.1 167036355 5873184 5992030..5993370 1 NC_010322.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN5466 metal ion transporter; hypothetical protein 5993370 5873184 PputGB1_5369 Pseudomonas putida GB-1 hypothetical protein YP_001671586.1 5992030 D 76869 CDS YP_001671587.1 167036356 5873185 complement(5993404..5994300) 1 NC_010322.1 PFAM: peptidase M23B; KEGG: pen:PSEEN5467 peptidase, M23/M37 family; peptidase M23B 5994300 5873185 PputGB1_5370 Pseudomonas putida GB-1 peptidase M23B YP_001671587.1 5993404 R 76869 CDS YP_001671588.1 167036357 5873186 complement(5994415..5995305) 1 NC_010322.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5468 response regulator; response regulator receiver protein 5995305 5873186 PputGB1_5371 Pseudomonas putida GB-1 response regulator receiver protein YP_001671588.1 5994415 R 76869 CDS YP_001671589.1 167036358 5873187 complement(5995459..5996229) 1 NC_010322.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pen:PSEEN5469 transcriptional repressor for high affinity phosphate uptake; phosphate uptake regulator PhoU 5996229 5873187 PputGB1_5372 Pseudomonas putida GB-1 phosphate uptake regulator PhoU YP_001671589.1 5995459 R 76869 CDS YP_001671590.1 167036359 5873188 complement(5996293..5997126) 1 NC_010322.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 5997126 5873188 PputGB1_5373 Pseudomonas putida GB-1 phosphate transporter ATP-binding protein YP_001671590.1 5996293 R 76869 CDS YP_001671591.1 167036360 5873189 complement(5997199..5998869) 1 NC_010322.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5471 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 5998869 5873189 PputGB1_5374 Pseudomonas putida GB-1 phosphate ABC transporter permease YP_001671591.1 5997199 R 76869 CDS YP_001671592.1 167036361 5873190 complement(5998887..6001175) 1 NC_010322.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5472 phosphate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 6001175 5873190 PputGB1_5375 Pseudomonas putida GB-1 binding-protein-dependent transport system inner membrane protein YP_001671592.1 5998887 R 76869 CDS YP_001671593.1 167036362 5873191 complement(6001314..6002312) 1 NC_010322.1 TIGRFAM: phosphate binding protein; KEGG: pen:PSEEN5473 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate binding protein 6002312 5873191 PputGB1_5376 Pseudomonas putida GB-1 phosphate binding protein YP_001671593.1 6001314 R 76869 CDS YP_001671594.1 167036363 5873192 complement(6002472..6003989) 1 NC_010322.1 PFAM: S-type Pyocin domain protein; KEGG: pfo:Pfl_5397 S-type pyocin; S-type pyocin domain-containing protein 6003989 5873192 PputGB1_5377 Pseudomonas putida GB-1 S-type pyocin domain-containing protein YP_001671594.1 6002472 R 76869 CDS YP_001671595.1 167036364 5873193 complement(6004456..6007044) 1 NC_010322.1 PFAM: S-type Pyocin domain protein; KEGG: psb:Psyr_0310 HNH endonuclease:S-type Pyocin; S-type pyocin domain-containing protein 6007044 5873193 PputGB1_5378 Pseudomonas putida GB-1 S-type pyocin domain-containing protein YP_001671595.1 6004456 R 76869 CDS YP_001671596.1 167036365 5873194 complement(6007172..6008461) 1 NC_010322.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN5474 permease (MFS superfamily); major facilitator superfamily transporter 6008461 5873194 PputGB1_5379 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001671596.1 6007172 R 76869 CDS YP_001671597.1 167036366 5873195 6008822..6009220 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pfo:Pfl_5617 thioesterase superfamily; thioesterase superfamily protein 6009220 5873195 PputGB1_5380 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001671597.1 6008822 D 76869 CDS YP_001671598.1 167036367 5873196 6009283..6010188 1 NC_010322.1 PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN5476 aldose 1-epimerase; aldose 1-epimerase 6010188 5873196 PputGB1_5381 Pseudomonas putida GB-1 aldose 1-epimerase YP_001671598.1 6009283 D 76869 CDS YP_001671599.1 167036368 5873197 complement(6010251..6010784) 1 NC_010322.1 KEGG: pen:PSEEN5477 hypothetical protein; hypothetical protein 6010784 5873197 PputGB1_5382 Pseudomonas putida GB-1 hypothetical protein YP_001671599.1 6010251 R 76869 CDS YP_001671600.1 167036369 5873198 complement(6010833..6011078) 1 NC_010322.1 PFAM: Transglycosylase-associated protein; KEGG: pen:PSEEN5478 hypothetical protein; transglycosylase-associated protein 6011078 5873198 PputGB1_5383 Pseudomonas putida GB-1 transglycosylase-associated protein YP_001671600.1 6010833 R 76869 CDS YP_001671601.1 167036370 5873199 complement(6011187..6012269) 1 NC_010322.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 6012269 5873199 PputGB1_5384 Pseudomonas putida GB-1 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001671601.1 6011187 R 76869 CDS YP_001671602.1 167036371 5873200 complement(6012280..6012771) 1 NC_010322.1 KEGG: pen:PSEEN5480 phosphoribosylaminoimidazole carboxylase, mutase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 6012771 5873200 PputGB1_5385 Pseudomonas putida GB-1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001671602.1 6012280 R 76869 CDS YP_001671603.1 167036372 5873201 complement(6012943..6013875) 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5481 transcriptional regulator, LysR family; LysR family transcriptional regulator 6013875 5873201 PputGB1_5386 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671603.1 6012943 R 76869 CDS YP_001671604.1 167036373 5873202 6014025..6015482 1 NC_010322.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 6015482 aspA 5873202 aspA Pseudomonas putida GB-1 aspartate ammonia-lyase YP_001671604.1 6014025 D 76869 CDS YP_001671605.1 167036374 5873203 6015662..6016654 1 NC_010322.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN5487 transcriptional regulator, AraC family; AraC family transcriptional regulator 6016654 5873203 PputGB1_5388 Pseudomonas putida GB-1 AraC family transcriptional regulator YP_001671605.1 6015662 D 76869 CDS YP_001671606.1 167036375 5873204 6016771..6017814 1 NC_010322.1 PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN5488 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein 6017814 5873204 PputGB1_5389 Pseudomonas putida GB-1 histone deacetylase superfamily protein YP_001671606.1 6016771 D 76869 CDS YP_001671607.1 167036376 5873205 6017814..6018917 1 NC_010322.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5489 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 6018917 5873205 PputGB1_5390 Pseudomonas putida GB-1 extracellular solute-binding protein YP_001671607.1 6017814 D 76869 CDS YP_001671608.1 167036377 5873206 complement(6018950..6020479) 1 NC_010322.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5491 transcriptional regulator, GntR family; transcriptional regulator 6020479 5873206 PputGB1_5391 Pseudomonas putida GB-1 transcriptional regulator YP_001671608.1 6018950 R 76869 CDS YP_001671609.1 167036378 5873207 6020570..6021199 1 NC_010322.1 PFAM: Negative transcriptional regulator; KEGG: pen:PSEEN5492 transcriptional regulator; FMN-binding negative transcriptional regulator 6021199 5873207 PputGB1_5392 Pseudomonas putida GB-1 FMN-binding negative transcriptional regulator YP_001671609.1 6020570 D 76869 CDS YP_001671610.1 167036379 5873208 6021212..6021658 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5493 acetyltransferase, GNAT family; N-acetyltransferase GCN5 6021658 5873208 PputGB1_5393 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001671610.1 6021212 D 76869 CDS YP_001671611.1 167036380 5873209 6021666..6022337 1 NC_010322.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5494 acetyltransferase, GNAT family; N-acetyltransferase GCN5 6022337 5873209 PputGB1_5394 Pseudomonas putida GB-1 N-acetyltransferase GCN5 YP_001671611.1 6021666 D 76869 CDS YP_001671612.1 167036381 5873210 complement(6022440..6024248) 1 NC_010322.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 6024248 5873210 PputGB1_5395 Pseudomonas putida GB-1 pyruvate carboxylase subunit B YP_001671612.1 6022440 R 76869 CDS YP_001671613.1 167036382 5873211 complement(6024260..6025675) 1 NC_010322.1 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A 6025675 5873211 PputGB1_5396 Pseudomonas putida GB-1 pyruvate carboxylase subunit A YP_001671613.1 6024260 R 76869 CDS YP_001671614.1 167036383 5873212 6025866..6026828 1 NC_010322.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5497 transcriptional regulator, LysR family; LysR family transcriptional regulator 6026828 5873212 PputGB1_5397 Pseudomonas putida GB-1 LysR family transcriptional regulator YP_001671614.1 6025866 D 76869 CDS YP_001671615.1 167036384 5873213 complement(6026770..6026988) 1 NC_010322.1 KEGG: pen:PSEEN5498 hypothetical protein; hypothetical protein 6026988 5873213 PputGB1_5398 Pseudomonas putida GB-1 hypothetical protein YP_001671615.1 6026770 R 76869 CDS YP_001671616.1 167036385 5873214 complement(6027139..6028005) 1 NC_010322.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN5499 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 6028005 5873214 PputGB1_5399 Pseudomonas putida GB-1 RpiR family transcriptional regulator YP_001671616.1 6027139 R 76869 CDS YP_001671617.1 167036386 5873215 6028109..6029551 1 NC_010322.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 6029551 5873215 PputGB1_5400 Pseudomonas putida GB-1 glucose-6-phosphate 1-dehydrogenase YP_001671617.1 6028109 D 76869 CDS YP_001671618.1 167036387 5873216 6029764..6031950 1 NC_010322.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 6031950 uvrD 5873216 uvrD Pseudomonas putida GB-1 DNA-dependent helicase II YP_001671618.1 6029764 D 76869 CDS YP_001671619.1 167036388 5873217 6032085..6032939 1 NC_010322.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: pen:PSEEN5505 hypothetical protein; import inner membrane translocase subunit Tim44 6032939 5873217 PputGB1_5402 Pseudomonas putida GB-1 import inner membrane translocase subunit Tim44 YP_001671619.1 6032085 D 76869 CDS YP_001671620.1 167036389 5873218 6033054..6033461 1 NC_010322.1 KEGG: psb:Psyr_5067 hypothetical protein; hypothetical protein 6033461 5873218 PputGB1_5403 Pseudomonas putida GB-1 hypothetical protein YP_001671620.1 6033054 D 76869 CDS YP_001671621.1 167036390 5873219 complement(6033595..6035355) 1 NC_010322.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5507 sodium/proton antiporter; sodium/hydrogen exchanger 6035355 5873219 PputGB1_5404 Pseudomonas putida GB-1 sodium/hydrogen exchanger YP_001671621.1 6033595 R 76869 CDS YP_001671622.1 167036391 5873220 6035698..6036183 1 NC_010322.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5508 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 6036183 5873220 PputGB1_5405 Pseudomonas putida GB-1 thioesterase superfamily protein YP_001671622.1 6035698 D 76869 CDS YP_001671623.1 167036392 5873221 complement(6036180..6037052) 1 NC_010322.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 6037052 5873221 PputGB1_5406 Pseudomonas putida GB-1 pyridoxamine kinase YP_001671623.1 6036180 R 76869 CDS YP_001671624.1 167036393 5873222 6037173..6037565 1 NC_010322.1 KEGG: pen:PSEEN5510 hypothetical protein; hypothetical protein 6037565 5873222 PputGB1_5407 Pseudomonas putida GB-1 hypothetical protein YP_001671624.1 6037173 D 76869 CDS YP_001671625.1 167036394 5873223 complement(6037566..6038537) 1 NC_010322.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5511 cobalamin synthesis protein, P47K family; cobalamin synthesis protein P47K 6038537 5873223 PputGB1_5408 Pseudomonas putida GB-1 cobalamin synthesis protein P47K YP_001671625.1 6037566 R 76869 CDS YP_001671626.1 167036395 5873224 complement(6038578..6039204) 1 NC_010322.1 PFAM: Protein of unknown function DUF1826; KEGG: pen:PSEEN5512 hypothetical protein; hypothetical protein 6039204 5873224 PputGB1_5409 Pseudomonas putida GB-1 hypothetical protein YP_001671626.1 6038578 R 76869 CDS YP_001671627.1 167036396 5873225 complement(6039201..6040406) 1 NC_010322.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5513 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 6040406 5873225 PputGB1_5410 Pseudomonas putida GB-1 cobalamin synthesis protein P47K YP_001671627.1 6039201 R 76869 CDS YP_001671628.1 167036397 5873226 6040521..6040901 1 NC_010322.1 KEGG: pen:PSEEN5514 hypothetical protein; hypothetical protein 6040901 5873226 PputGB1_5411 Pseudomonas putida GB-1 hypothetical protein YP_001671628.1 6040521 D 76869 CDS YP_001671629.1 167036398 5873227 6040927..6041832 1 NC_010322.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 6041832 5873227 PputGB1_5412 Pseudomonas putida GB-1 putative GTP cyclohydrolase YP_001671629.1 6040927 D 76869 CDS YP_001671630.1 167036399 5873228 complement(6041816..6042343) 1 NC_010322.1 KEGG: pen:PSEEN5516 hypothetical protein; hypothetical protein 6042343 5873228 PputGB1_5413 Pseudomonas putida GB-1 hypothetical protein YP_001671630.1 6041816 R 76869 CDS YP_001671631.1 167036400 5873229 6042477..6043916 1 NC_010322.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 6043916 cls 5873229 cls Pseudomonas putida GB-1 cardiolipin synthetase YP_001671631.1 6042477 D 76869 CDS YP_001671632.1 167036401 5873230 complement(6043981..6045165) 1 NC_010322.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5518 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 6045165 5873230 PputGB1_5415 Pseudomonas putida GB-1 cyclopropane-fatty-acyl-phospholipid synthase YP_001671632.1 6043981 R 76869 CDS YP_001671633.1 167036402 5873231 6045373..6046773 1 NC_010322.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 6046773 5873231 PputGB1_5416 Pseudomonas putida GB-1 dihydrolipoamide dehydrogenase YP_001671633.1 6045373 D 76869 CDS YP_001671634.1 167036403 5873232 complement(6047157..6048380) 1 NC_010322.1 PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA0811 probable major facilitator superfamily (MFS) transporter; major facilitator superfamily transporter 6048380 5873232 PputGB1_5417 Pseudomonas putida GB-1 major facilitator superfamily transporter YP_001671634.1 6047157 R 76869 CDS YP_001671635.1 167036404 5873233 complement(6048507..6049397) 1 NC_010322.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: bci:BCI_0153 glutamate racemase; glutamate racemase 6049397 5873233 PputGB1_5418 Pseudomonas putida GB-1 glutamate racemase YP_001671635.1 6048507 R 76869 CDS YP_001671636.1 167036405 5873234 complement(6049409..6050383) 1 NC_010322.1 KEGG: rxy:Rxyl_1155 hypothetical protein; hypothetical protein 6050383 5873234 PputGB1_5419 Pseudomonas putida GB-1 hypothetical protein YP_001671636.1 6049409 R 76869 CDS YP_001671637.1 167036406 5873235 complement(6051479..6051823) 1 NC_010322.1 KEGG: dar:Daro_1371 hypothetical protein; hypothetical protein 6051823 5873235 PputGB1_5420 Pseudomonas putida GB-1 hypothetical protein YP_001671637.1 6051479 R 76869 CDS YP_001671638.1 167036407 5873236 complement(6051831..6052526) 1 NC_010322.1 KEGG: dar:Daro_1373 hypothetical protein; hypothetical protein 6052526 5873236 PputGB1_5421 Pseudomonas putida GB-1 hypothetical protein YP_001671638.1 6051831 R 76869 CDS YP_001671639.1 167036408 5873237 6054036..6055475 1 NC_010322.1 hypothetical protein 6055475 5873237 PputGB1_5422 Pseudomonas putida GB-1 hypothetical protein YP_001671639.1 6054036 D 76869 CDS YP_001671640.1 167036409 5873238 6055482..6056171 1 NC_010322.1 PFAM: peptidase M23B; KEGG: rso:RSc0249 putative calcium binding hemolysin protein; peptidase M23B 6056171 5873238 PputGB1_5423 Pseudomonas putida GB-1 peptidase M23B YP_001671640.1 6055482 D 76869 CDS YP_001671641.1 167036410 5873239 6056930..6057208 1 NC_010322.1 PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 6057208 5873239 PputGB1_5424 Pseudomonas putida GB-1 transposase IS3/IS911 family protein YP_001671641.1 6056930 D 76869 CDS YP_001671642.1 167036411 5873240 6057247..6058080 1 NC_010322.1 PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 6058080 5873240 PputGB1_5425 Pseudomonas putida GB-1 integrase catalytic subunit YP_001671642.1 6057247 D 76869 CDS YP_001671643.1 167036412 5873241 complement(6058096..6058482) 1 NC_010322.1 hypothetical protein 6058482 5873241 PputGB1_5426 Pseudomonas putida GB-1 hypothetical protein YP_001671643.1 6058096 R 76869 CDS YP_001671644.1 167036413 5873242 complement(6058632..6060467) 1 NC_010322.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 6060467 5873242 PputGB1_5427 Pseudomonas putida GB-1 glucosamine--fructose-6-phosphate aminotransferase YP_001671644.1 6058632 R 76869 CDS YP_001671645.1 167036414 5873243 complement(6060471..6061247) 1 NC_010322.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN5538 transcriptional repressor, DeoR family; DeoR family transcriptional regulator 6061247 5873243 PputGB1_5428 Pseudomonas putida GB-1 DeoR family transcriptional regulator YP_001671645.1 6060471 R 76869 CDS YP_001671646.1 167036415 5873244 complement(6061553..6062920) 1 NC_010322.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pen:PSEEN5540 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 6062920 5873244 PputGB1_5429 Pseudomonas putida GB-1 UDP-N-acetylglucosamine pyrophosphorylase YP_001671646.1 6061553 R 76869 CDS YP_001671647.1 167036416 5873245 complement(6063041..6063460) 1 NC_010322.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 6063460 atpC 5873245 atpC Pseudomonas putida GB-1 F0F1 ATP synthase subunit epsilon YP_001671647.1 6063041 R 76869 CDS YP_001671648.1 167036417 5873246 complement(6063504..6064880) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 6064880 5873246 PputGB1_5431 Pseudomonas putida GB-1 F0F1 ATP synthase subunit beta YP_001671648.1 6063504 R 76869 CDS YP_001671649.1 167036418 5873247 complement(6064908..6065768) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 6065768 5873247 PputGB1_5432 Pseudomonas putida GB-1 F0F1 ATP synthase subunit gamma YP_001671649.1 6064908 R 76869 CDS YP_001671650.1 167036419 5873248 complement(6065817..6067361) 1 NC_010322.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 6067361 5873248 PputGB1_5433 Pseudomonas putida GB-1 F0F1 ATP synthase subunit alpha YP_001671650.1 6065817 R 76869 CDS YP_001671651.1 167036420 5873249 complement(6067383..6067919) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 6067919 5873249 PputGB1_5434 Pseudomonas putida GB-1 F0F1 ATP synthase subunit delta YP_001671651.1 6067383 R 76869 CDS YP_001671652.1 167036421 5873250 complement(6067932..6068402) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 6068402 5873250 PputGB1_5435 Pseudomonas putida GB-1 F0F1 ATP synthase subunit B YP_001671652.1 6067932 R 76869 CDS YP_001671653.1 167036422 5873251 complement(6068459..6068716) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 6068716 5873251 PputGB1_5436 Pseudomonas putida GB-1 F0F1 ATP synthase subunit C YP_001671653.1 6068459 R 76869 CDS YP_001671654.1 167036423 5873252 complement(6068861..6069730) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 6069730 5873252 PputGB1_5437 Pseudomonas putida GB-1 F0F1 ATP synthase subunit A YP_001671654.1 6068861 R 76869 CDS YP_001671655.1 167036424 5873253 complement(6069747..6070154) 1 NC_010322.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 6070154 5873253 PputGB1_5438 Pseudomonas putida GB-1 F0F1 ATP synthase subunit I YP_001671655.1 6069747 R 76869 CDS YP_001671656.1 167036425 5873254 complement(6070304..6071176) 1 NC_010322.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pen:PSEEN5551 chromosomal partitioning protein ParB; parB-like partition protein 6071176 5873254 PputGB1_5439 Pseudomonas putida GB-1 parB-like partition protein YP_001671656.1 6070304 R 76869 CDS YP_001671657.1 167036426 5873255 complement(6071186..6071977) 1 NC_010322.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN5552 chromosome partitioning ATPase ParA; cobyrinic acid ac-diamide synthase 6071977 5873255 PputGB1_5440 Pseudomonas putida GB-1 cobyrinic acid ac-diamide synthase YP_001671657.1 6071186 R 76869 CDS YP_001671658.1 167036427 5873256 complement(6071996..6072646) 1 NC_010322.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 6072646 gidB 5873256 gidB Pseudomonas putida GB-1 16S rRNA methyltransferase GidB YP_001671658.1 6071996 R 76869 CDS YP_001671659.1 167036428 5873257 complement(6072643..6074535) 1 NC_010322.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 6074535 5873257 PputGB1_5442 Pseudomonas putida GB-1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001671659.1 6072643 R 76869 CDS YP_001671660.1 167036429 5873258 complement(6075052..6076422) 1 NC_010322.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 6076422 trmE 5873258 trmE Pseudomonas putida GB-1 tRNA modification GTPase TrmE YP_001671660.1 6075052 R 76869 CDS YP_001671661.1 167036430 5873259 complement(6076511..6078193) 1 NC_010322.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 6078193 5873259 PputGB1_5444 Pseudomonas putida GB-1 putative inner membrane protein translocase component YidC YP_001671661.1 6076511 R 76869 CDS