-- dump date 20140620_010406 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 76869000001 SEQ_END SEQ_END NC_010322.1 6078430 6078430 DR NC_010322.1; contig end 6078430..6078430 Pseudomonas putida GB-1 YP_001666253.1 CDS rnpA NC_010322.1 4 408 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(4..408) Pseudomonas putida GB-1 5873260 YP_001666254.1 CDS rpmH NC_010322.1 422 556 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(422..556) Pseudomonas putida GB-1 5868001 YP_001666255.1 CDS dnaA NC_010322.1 1152 2684 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1152..2684 Pseudomonas putida GB-1 5868002 YP_001666256.1 CDS PputGB1_0004 NC_010322.1 2725 3828 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2725..3828 Pseudomonas putida GB-1 5868003 YP_001666257.1 CDS recF NC_010322.1 3844 4947 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3844..4947 Pseudomonas putida GB-1 5868004 YP_001666258.1 CDS gyrB NC_010322.1 4952 7372 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4952..7372 Pseudomonas putida GB-1 5868005 YP_001666259.1 CDS PputGB1_0007 NC_010322.1 8209 8847 D KEGG: bur:Bcep18194_C6542 hypothetical protein; hypothetical protein 8209..8847 Pseudomonas putida GB-1 5868006 YP_001666260.1 CDS PputGB1_0008 NC_010322.1 8828 10786 D PFAM: Integrase catalytic region; KEGG: bur:Bcep18194_C6543 hypothetical protein; integrase catalytic subunit 8828..10786 Pseudomonas putida GB-1 5868007 YP_001666261.1 CDS PputGB1_0009 NC_010322.1 10783 11742 D SMART: AAA ATPase; KEGG: bur:Bcep18194_C6544 hypothetical protein; AAA ATPase 10783..11742 Pseudomonas putida GB-1 5868008 YP_001666262.1 CDS PputGB1_0010 NC_010322.1 11818 13734 D KEGG: pst:PSPTO_0030 hypothetical protein; hypothetical protein 11818..13734 Pseudomonas putida GB-1 5868009 YP_001666263.1 CDS PputGB1_0011 NC_010322.1 13791 14150 D KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 13791..14150 Pseudomonas putida GB-1 5868010 YP_001666264.1 CDS PputGB1_0012 NC_010322.1 14522 14854 D KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein 14522..14854 Pseudomonas putida GB-1 5868011 YP_001666265.1 CDS PputGB1_0013 NC_010322.1 14952 15407 R PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein complement(14952..15407) Pseudomonas putida GB-1 5868012 YP_001666266.1 CDS PputGB1_0014 NC_010322.1 15397 16176 R KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein complement(15397..16176) Pseudomonas putida GB-1 5868013 YP_001666267.1 CDS PputGB1_0015 NC_010322.1 16186 17301 R PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B complement(16186..17301) Pseudomonas putida GB-1 5868014 YP_001666268.1 CDS PputGB1_0016 NC_010322.1 17291 17614 R KEGG: psa:PST_3382 hypothetical protein; hypothetical protein complement(17291..17614) Pseudomonas putida GB-1 5868015 YP_001666269.1 CDS PputGB1_0017 NC_010322.1 17629 19587 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein complement(17629..19587) Pseudomonas putida GB-1 5868016 YP_001666270.1 CDS PputGB1_0018 NC_010322.1 19770 19976 R KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein complement(19770..19976) Pseudomonas putida GB-1 5868017 YP_001666271.1 CDS PputGB1_0019 NC_010322.1 20143 20820 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psa:PST_3390 transcriptional activator CopR; two component heavy metal response transcriptional regulator 20143..20820 Pseudomonas putida GB-1 5868018 YP_001666272.1 CDS PputGB1_0020 NC_010322.1 20820 22226 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 20820..22226 Pseudomonas putida GB-1 5868019 YP_001666273.1 CDS PputGB1_0021 NC_010322.1 22263 22610 D KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 22263..22610 Pseudomonas putida GB-1 5868020 YP_001666274.1 CDS PputGB1_0022 NC_010322.1 22697 23950 D PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 22697..23950 Pseudomonas putida GB-1 5868021 YP_001666275.1 CDS PputGB1_0023 NC_010322.1 23947 25413 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 23947..25413 Pseudomonas putida GB-1 5868022 YP_001666276.1 CDS PputGB1_0024 NC_010322.1 25410 28568 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 25410..28568 Pseudomonas putida GB-1 5868023 YP_001666277.1 CDS PputGB1_0025 NC_010322.1 28565 28912 D KEGG: pap:PSPA7_4016 heavy metal efflux system protein, putative; hypothetical protein 28565..28912 Pseudomonas putida GB-1 5868024 YP_001666278.1 CDS PputGB1_0026 NC_010322.1 29327 29986 R KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(29327..29986) Pseudomonas putida GB-1 5868025 YP_001666279.1 CDS PputGB1_0027 NC_010322.1 29983 30258 R KEGG: ajs:Ajs_1465 hypothetical protein; hypothetical protein complement(29983..30258) Pseudomonas putida GB-1 5868026 YP_001666280.1 CDS PputGB1_0028 NC_010322.1 30284 30739 R KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein complement(30284..30739) Pseudomonas putida GB-1 5868027 YP_001666281.1 CDS PputGB1_0029 NC_010322.1 30878 31900 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: net:Neut_0066 40-residue YVTN family beta-propeller repeat protein; hypothetical protein complement(30878..31900) Pseudomonas putida GB-1 5868028 YP_001666282.1 CDS PputGB1_0030 NC_010322.1 32166 32357 R PFAM: Heavy metal transport/detoxification protein; KEGG: pmy:Pmen_2225 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(32166..32357) Pseudomonas putida GB-1 5868029 YP_001666283.1 CDS PputGB1_0031 NC_010322.1 32704 35220 R KEGG: pmy:Pmen_2229 copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase complement(32704..35220) Pseudomonas putida GB-1 5868030 YP_001666284.1 CDS PputGB1_0032 NC_010322.1 35491 35697 D KEGG: pap:PSPA7_3842 probable transcriptional regulator; putative transcriptional regulator 35491..35697 Pseudomonas putida GB-1 5868031 YP_001666285.1 CDS PputGB1_0033 NC_010322.1 36052 37248 D KEGG: rxy:Rxyl_2639 hypothetical protein; hypothetical protein 36052..37248 Pseudomonas putida GB-1 5868032 YP_001666286.1 CDS PputGB1_0034 NC_010322.1 37432 37764 R hypothetical protein complement(37432..37764) Pseudomonas putida GB-1 5868033 YP_001666287.1 CDS PputGB1_0035 NC_010322.1 38080 38328 D hypothetical protein 38080..38328 Pseudomonas putida GB-1 5868034 YP_001666288.1 CDS PputGB1_0036 NC_010322.1 38639 39562 D KEGG: pap:PSPA7_4526 hypothetical protein; hypothetical protein 38639..39562 Pseudomonas putida GB-1 5868035 YP_001666289.1 CDS PputGB1_0037 NC_010322.1 39747 39911 R hypothetical protein complement(39747..39911) Pseudomonas putida GB-1 5868036 YP_001666290.1 CDS PputGB1_0038 NC_010322.1 40357 40485 R KEGG: sbn:Sbal195_4409 hypothetical protein; hypothetical protein complement(40357..40485) Pseudomonas putida GB-1 5868037 YP_001666291.1 CDS PputGB1_0039 NC_010322.1 40608 42305 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pau:PA14_39020 hypothetical protein; hypothetical protein complement(40608..42305) Pseudomonas putida GB-1 5868038 YP_001666292.1 CDS PputGB1_0040 NC_010322.1 43189 44094 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pfl:PFL_5222 cobalt/cadmium/zinc transporter, CDF family; cation diffusion facilitator family transporter 43189..44094 Pseudomonas putida GB-1 5868039 YP_001666293.1 CDS PputGB1_0041 NC_010322.1 44252 44602 D KEGG: mms:mma_3055 hypothetical protein; hypothetical protein 44252..44602 Pseudomonas putida GB-1 5868040 YP_001666294.1 CDS PputGB1_0042 NC_010322.1 44635 44961 R KEGG: psb:Psyr_4809 hypothetical protein; hypothetical protein complement(44635..44961) Pseudomonas putida GB-1 5868041 YP_001666295.1 CDS PputGB1_0043 NC_010322.1 45651 46325 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 45651..46325 Pseudomonas putida GB-1 5867731 YP_001666296.1 CDS PputGB1_0044 NC_010322.1 46322 47740 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 46322..47740 Pseudomonas putida GB-1 5867732 YP_001666297.1 CDS PputGB1_0045 NC_010322.1 47798 48385 R hypothetical protein complement(47798..48385) Pseudomonas putida GB-1 5867733 YP_001666298.1 CDS PputGB1_0046 NC_010322.1 48652 48873 D hypothetical protein 48652..48873 Pseudomonas putida GB-1 5867734 YP_001666299.1 CDS PputGB1_0047 NC_010322.1 48956 50410 R PFAM: glycosyl transferase family 39; KEGG: pap:PSPA7_5537 hypothetical protein; glycosyl transferase family protein complement(48956..50410) Pseudomonas putida GB-1 5867735 YP_001666300.1 CDS PputGB1_0048 NC_010322.1 50404 51387 R PFAM: glycosyl transferase family 2; KEGG: vha:VIBHAR_02791 hypothetical protein; ribonuclease III complement(50404..51387) Pseudomonas putida GB-1 5867736 YP_001666301.1 CDS PputGB1_0049 NC_010322.1 51353 51772 R PFAM: GtrA family protein; KEGG: sde:Sde_0136 hypothetical protein; GtrA family protein complement(51353..51772) Pseudomonas putida GB-1 5867737 YP_001666302.1 CDS PputGB1_0050 NC_010322.1 52030 52998 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2828 transcriptional regulator, LysR family; LysR family transcriptional regulator 52030..52998 Pseudomonas putida GB-1 5867738 YP_001666303.1 CDS PputGB1_0051 NC_010322.1 53209 54516 D PFAM: phosphate-selective porin O and P; KEGG: pau:PA14_21620 phosphate-specific outer membrane porin OprP precursor; phosphate-selective porin O and P 53209..54516 Pseudomonas putida GB-1 5867739 YP_001666304.1 CDS PputGB1_0052 NC_010322.1 54536 54670 D hypothetical protein 54536..54670 Pseudomonas putida GB-1 5867740 YP_001666305.1 CDS PputGB1_0053 NC_010322.1 54815 55840 D hypothetical protein 54815..55840 Pseudomonas putida GB-1 5867741 YP_001666306.1 CDS PputGB1_0054 NC_010322.1 55968 56192 D hypothetical protein 55968..56192 Pseudomonas putida GB-1 5867742 YP_001666307.1 CDS PputGB1_0055 NC_010322.1 56285 58282 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_4435 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(56285..58282) Pseudomonas putida GB-1 5867743 YP_001666308.1 CDS PputGB1_0056 NC_010322.1 58485 58808 R KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein complement(58485..58808) Pseudomonas putida GB-1 5867744 YP_001666309.1 CDS PputGB1_0057 NC_010322.1 58971 62132 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein complement(58971..62132) Pseudomonas putida GB-1 5867745 YP_001666310.1 CDS PputGB1_0058 NC_010322.1 62157 63407 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit complement(62157..63407) Pseudomonas putida GB-1 5867746 YP_001666311.1 CDS PputGB1_0059 NC_010322.1 63476 64747 R PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein complement(63476..64747) Pseudomonas putida GB-1 5867747 YP_001666312.1 CDS PputGB1_0060 NC_010322.1 65151 66494 D PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 65151..66494 Pseudomonas putida GB-1 5867748 YP_001666313.1 CDS PputGB1_0061 NC_010322.1 66984 67658 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5221 DNA-binding heavy metal response regulator, putative; two component heavy metal response transcriptional regulator 66984..67658 Pseudomonas putida GB-1 5867749 YP_001666314.1 CDS PputGB1_0062 NC_010322.1 67776 68099 D KEGG: yen:YE1651 hypothetical protein; hypothetical protein 67776..68099 Pseudomonas putida GB-1 5867750 YP_001666315.1 CDS PputGB1_0063 NC_010322.1 68201 68728 R hypothetical protein complement(68201..68728) Pseudomonas putida GB-1 5867751 YP_001666316.1 CDS PputGB1_0064 NC_010322.1 68918 70345 R KEGG: nwi:Nwi_0260 hypothetical protein; hypothetical protein complement(68918..70345) Pseudomonas putida GB-1 5867752 YP_001666317.1 CDS PputGB1_0065 NC_010322.1 70397 70798 R hypothetical protein complement(70397..70798) Pseudomonas putida GB-1 5867753 YP_001666318.1 CDS PputGB1_0066 NC_010322.1 71537 71944 R KEGG: bxe:Bxe_B1530 hypothetical protein; hypothetical protein complement(71537..71944) Pseudomonas putida GB-1 5867754 YP_001666319.1 CDS PputGB1_0067 NC_010322.1 72074 73366 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN0005 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(72074..73366) Pseudomonas putida GB-1 5867755 YP_001666320.1 CDS PputGB1_0068 NC_010322.1 73589 74473 D PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 73589..74473 Pseudomonas putida GB-1 5867756 YP_001666321.1 CDS PputGB1_0069 NC_010322.1 74514 75782 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0008 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 74514..75782 Pseudomonas putida GB-1 5867757 YP_001666322.1 CDS PputGB1_0070 NC_010322.1 75779 76597 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein; hypothetical protein 75779..76597 Pseudomonas putida GB-1 5867758 YP_001666323.1 CDS PputGB1_0071 NC_010322.1 76586 77473 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0010 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(76586..77473) Pseudomonas putida GB-1 5867759 YP_001666324.1 CDS PputGB1_0072 NC_010322.1 77652 79298 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0012 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 77652..79298 Pseudomonas putida GB-1 5867760 YP_001666325.1 CDS PputGB1_0073 NC_010322.1 79396 81015 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0013 major facilitator family transporter; general substrate transporter 79396..81015 Pseudomonas putida GB-1 5867761 YP_001666326.1 CDS PputGB1_0074 NC_010322.1 81193 81978 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0014 N-acylhomoserine lactone synthase; phospholipid/glycerol acyltransferase complement(81193..81978) Pseudomonas putida GB-1 5867762 YP_001666327.1 CDS PputGB1_0075 NC_010322.1 82025 82552 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(82025..82552) Pseudomonas putida GB-1 5867763 YP_001666328.1 CDS glyS NC_010322.1 82556 84607 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(82556..84607) Pseudomonas putida GB-1 5867764 YP_001666329.1 CDS glyQ NC_010322.1 84604 85551 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(84604..85551) Pseudomonas putida GB-1 5867765 YP_001666330.1 CDS PputGB1_0078 NC_010322.1 85635 86186 D KEGG: pen:PSEEN0018 3-methyl-adenine DNA glycosylase I, constitutive; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 85635..86186 Pseudomonas putida GB-1 5867766 YP_001666331.1 CDS PputGB1_0079 NC_010322.1 86228 87115 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 86228..87115 Pseudomonas putida GB-1 5867767 YP_001666332.1 CDS PputGB1_0080 NC_010322.1 87233 87541 R SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0021 hypothetical protein; hypothetical protein complement(87233..87541) Pseudomonas putida GB-1 5867768 YP_001666333.1 CDS trkA NC_010322.1 87553 88926 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(87553..88926) Pseudomonas putida GB-1 5867769 YP_001666334.1 CDS PputGB1_0082 NC_010322.1 88950 90260 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pen:PSEEN0023 ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase); sun protein complement(88950..90260) Pseudomonas putida GB-1 5867770 YP_001666335.1 CDS fmt NC_010322.1 90257 91189 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(90257..91189) Pseudomonas putida GB-1 5867771 YP_001666336.1 CDS def NC_010322.1 91250 91756 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(91250..91756) Pseudomonas putida GB-1 5867772 YP_001666337.1 CDS PputGB1_0085 NC_010322.1 91963 93060 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pen:PSEEN0026 smf protein, DNA processing chain A; DNA protecting protein DprA 91963..93060 Pseudomonas putida GB-1 5867773 YP_001666338.1 CDS PputGB1_0086 NC_010322.1 93103 93660 D PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN0027 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 93103..93660 Pseudomonas putida GB-1 5867774 YP_001666339.1 CDS PputGB1_0087 NC_010322.1 94569 94874 D KEGG: pen:PSEEN0028 hypothetical protein; hypothetical protein 94569..94874 Pseudomonas putida GB-1 5867775 YP_001666340.1 CDS PputGB1_0088 NC_010322.1 95002 95979 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0029 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase complement(95002..95979) Pseudomonas putida GB-1 5867776 YP_001666341.1 CDS PputGB1_0089 NC_010322.1 96114 97025 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 96114..97025 Pseudomonas putida GB-1 5867777 YP_001666342.1 CDS aroE NC_010322.1 97051 97875 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 97051..97875 Pseudomonas putida GB-1 5867778 YP_001666343.1 CDS PputGB1_0091 NC_010322.1 98019 99584 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: pen:PSEEN0032 sulfate transporter; sulfate transporter complement(98019..99584) Pseudomonas putida GB-1 5867779 YP_001666344.1 CDS PputGB1_0092 NC_010322.1 99712 100635 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN0033 glycine betaine-binding protein; choline ABC transporter periplasmic binding protein complement(99712..100635) Pseudomonas putida GB-1 5867780 YP_001666345.1 CDS PputGB1_0093 NC_010322.1 100650 102167 R TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: pen:PSEEN0034 choline sulfatase; choline-sulfatase complement(100650..102167) Pseudomonas putida GB-1 5867781 YP_001666346.1 CDS PputGB1_0094 NC_010322.1 102276 103175 D TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0035 transcriptional regulator, LysR family; LysR family transcriptional regulator 102276..103175 Pseudomonas putida GB-1 5867782 YP_001666347.1 CDS PputGB1_0095 NC_010322.1 103291 103845 R KEGG: pfo:Pfl_0028 hypothetical protein; hypothetical protein complement(103291..103845) Pseudomonas putida GB-1 5867783 YP_001666348.1 CDS PputGB1_0096 NC_010322.1 103898 104230 D PFAM: Dopa 45-dioxygenase; KEGG: pen:PSEEN0036 hypothetical protein; DOPA 45-dioxygenase 103898..104230 Pseudomonas putida GB-1 5867784 YP_001666349.1 CDS trpA NC_010322.1 104350 105159 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(104350..105159) Pseudomonas putida GB-1 5867785 YP_001666350.1 CDS PputGB1_0098 NC_010322.1 105156 106373 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(105156..106373) Pseudomonas putida GB-1 5867786 YP_001666351.1 CDS PputGB1_0099 NC_010322.1 106484 107380 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0039 transcriptional regulator TrpI; LysR family transcriptional regulator 106484..107380 Pseudomonas putida GB-1 5867787 YP_001666352.1 CDS PputGB1_0100 NC_010322.1 107377 107700 R PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN0040 hypothetical protein; hypothetical protein complement(107377..107700) Pseudomonas putida GB-1 5867788 YP_001666353.1 CDS PputGB1_0101 NC_010322.1 107851 108066 D PFAM: protein of unknown function DUF1458; KEGG: pen:PSEEN0041 hypothetical protein; hypothetical protein 107851..108066 Pseudomonas putida GB-1 5867789 YP_001666354.1 CDS PputGB1_0102 NC_010322.1 108168 108389 D PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0042 hypothetical protein; hypothetical protein 108168..108389 Pseudomonas putida GB-1 5867790 YP_001666355.1 CDS PputGB1_0103 NC_010322.1 108427 109431 R PFAM: luciferase family protein; KEGG: pen:PSEEN0043 luciferase-like monooxygenase; luciferase family protein complement(108427..109431) Pseudomonas putida GB-1 5867791 YP_001666356.1 CDS PputGB1_0104 NC_010322.1 109584 110009 D PFAM: OsmC family protein; KEGG: pap:PSPA7_0059 osmotically inducible protein OsmC; OsmC family protein 109584..110009 Pseudomonas putida GB-1 5867792 YP_001666357.1 CDS PputGB1_0105 NC_010322.1 110084 110317 D PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein; hypothetical protein 110084..110317 Pseudomonas putida GB-1 5867793 YP_001666358.1 CDS PputGB1_0106 NC_010322.1 110353 110766 R KEGG: pen:PSEEN0045 lipoprotein; lipoprotein complement(110353..110766) Pseudomonas putida GB-1 5867794 YP_001666359.1 CDS PputGB1_0107 NC_010322.1 110822 111235 R KEGG: pen:PSEEN0046 lipoprotein; lipoprotein complement(110822..111235) Pseudomonas putida GB-1 5867795 YP_001666360.1 CDS PputGB1_0108 NC_010322.1 111321 112394 D KEGG: pen:PSEEN0047 hypothetical protein; hypothetical protein 111321..112394 Pseudomonas putida GB-1 5867796 YP_001666361.1 CDS PputGB1_0109 NC_010322.1 112428 113102 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0048 hydrolase, HAD family; HAD family hydrolase complement(112428..113102) Pseudomonas putida GB-1 5867797 YP_001666362.1 CDS PputGB1_0110 NC_010322.1 113099 113647 R KEGG: pen:PSEEN0049 transferase; transferase complement(113099..113647) Pseudomonas putida GB-1 5867798 YP_001666363.1 CDS PputGB1_0111 NC_010322.1 113714 115801 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pen:PSEEN0050 oligopeptidase A; oligopeptidase A 113714..115801 Pseudomonas putida GB-1 5867799 YP_001666364.1 CDS PputGB1_0112 NC_010322.1 115798 116079 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0051 hypothetical protein; hypothetical protein 115798..116079 Pseudomonas putida GB-1 5867800 YP_001666365.1 CDS PputGB1_0113 NC_010322.1 116160 117218 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN0052 hypothetical protein; radical SAM domain-containing protein 116160..117218 Pseudomonas putida GB-1 5867801 YP_001666366.1 CDS PputGB1_0114 NC_010322.1 117511 118230 D PFAM: carbonic anhydrase; KEGG: pen:PSEEN0053 carbonic anhydrase; carbonate dehydratase 117511..118230 Pseudomonas putida GB-1 5867802 YP_001666367.1 CDS PputGB1_0115 NC_010322.1 118423 119955 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0054 sulfate transporter; sulfate transporter 118423..119955 Pseudomonas putida GB-1 5867803 YP_001666368.1 CDS PputGB1_0116 NC_010322.1 120088 120729 R KEGG: pen:PSEEN0055 hypothetical protein; hypothetical protein complement(120088..120729) Pseudomonas putida GB-1 5867804 YP_001666369.1 CDS PputGB1_0117 NC_010322.1 121099 122226 D TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: pen:PSEEN0056 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 121099..122226 Pseudomonas putida GB-1 5867805 YP_001666370.1 CDS PputGB1_0118 NC_010322.1 122270 123859 D KEGG: pen:PSEEN0057 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 122270..123859 Pseudomonas putida GB-1 5867806 YP_001666371.1 CDS PputGB1_0119 NC_010322.1 123870 124436 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 123870..124436 Pseudomonas putida GB-1 5867807 YP_001666372.1 CDS PputGB1_0120 NC_010322.1 124453 125340 D PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0059 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 124453..125340 Pseudomonas putida GB-1 5867808 YP_001666373.1 CDS PputGB1_0121 NC_010322.1 125402 125605 R KEGG: pen:PSEEN0060 hypothetical protein; hypothetical protein complement(125402..125605) Pseudomonas putida GB-1 5867809 YP_001666374.1 CDS PputGB1_0122 NC_010322.1 125657 126394 D KEGG: pen:PSEEN0061 hypothetical protein; hypothetical protein 125657..126394 Pseudomonas putida GB-1 5867810 YP_001666375.1 CDS PputGB1_0123 NC_010322.1 126363 126944 D KEGG: pen:PSEEN0062 hypothetical protein; hypothetical protein 126363..126944 Pseudomonas putida GB-1 5867811 YP_001666376.1 CDS PputGB1_0124 NC_010322.1 126954 128033 D PFAM: cytochrome oxidase assembly; KEGG: pen:PSEEN0063 cytochrome oxidase assembly protein; cytochrome oxidase assembly 126954..128033 Pseudomonas putida GB-1 5867812 YP_001666377.1 CDS PputGB1_0125 NC_010322.1 128018 128911 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 128018..128911 Pseudomonas putida GB-1 5867813 YP_001666378.1 CDS PputGB1_0126 NC_010322.1 128908 129540 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN0065 electron transport protein, Sco1/SenC family; electron transport protein SCO1/SenC 128908..129540 Pseudomonas putida GB-1 5867814 YP_001666379.1 CDS PputGB1_0127 NC_010322.1 129664 130434 R PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0066 D-methionine-binding lipoprotein MetQ; NLPA lipoprotein complement(129664..130434) Pseudomonas putida GB-1 5867815 YP_001666380.1 CDS PputGB1_0128 NC_010322.1 130499 131170 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0067 D-methionine ABC transporter MetI, membrane protein; binding-protein-dependent transport system inner membrane protein complement(130499..131170) Pseudomonas putida GB-1 5867816 YP_001666381.1 CDS metN NC_010322.1 131170 132177 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(131170..132177) Pseudomonas putida GB-1 5867817 YP_001666382.1 CDS katE NC_010322.1 132405 134540 D Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 132405..134540 Pseudomonas putida GB-1 5867818 YP_001666383.1 CDS PputGB1_0131 NC_010322.1 134637 135344 R KEGG: pen:PSEEN0069 lipoprotein; lipoprotein complement(134637..135344) Pseudomonas putida GB-1 5867819 YP_001666384.1 CDS PputGB1_0132 NC_010322.1 135472 136254 R PFAM: ABC-3 protein; KEGG: pen:PSEEN0070 zinc ABC transporter, permease protein; ABC-3 protein complement(135472..136254) Pseudomonas putida GB-1 5867820 YP_001666385.1 CDS PputGB1_0133 NC_010322.1 136247 137020 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0071 zinc ABC transporter, ATP-binding protein; ABC transporter-like protein complement(136247..137020) Pseudomonas putida GB-1 5867821 YP_001666386.1 CDS PputGB1_0134 NC_010322.1 137017 137502 R KEGG: pen:PSEEN0072 transcriptional repressor of Zn transport system Zur; ferric uptake regulator family protein complement(137017..137502) Pseudomonas putida GB-1 5867822 YP_001666387.1 CDS PputGB1_0135 NC_010322.1 137521 138477 D PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN0073 zinc ABC transporter ZnuA, periplasmic binding protein; periplasmic solute binding protein 137521..138477 Pseudomonas putida GB-1 5867823 YP_001666388.1 CDS PputGB1_0136 NC_010322.1 138528 139478 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(138528..139478) Pseudomonas putida GB-1 5867824 YP_001666389.1 CDS PputGB1_0137 NC_010322.1 139548 139835 R KEGG: pen:PSEEN0075 hypothetical protein; hypothetical protein complement(139548..139835) Pseudomonas putida GB-1 5867825 YP_001666390.1 CDS PputGB1_0138 NC_010322.1 139911 142658 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 139911..142658 Pseudomonas putida GB-1 5867826 YP_001666391.1 CDS engB NC_010322.1 142993 143625 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(142993..143625) Pseudomonas putida GB-1 5867827 YP_001666392.1 CDS PputGB1_0140 NC_010322.1 143827 144129 D KEGG: pen:PSEEN0079 cytochrome c-type protein; cytochrome c-type protein 143827..144129 Pseudomonas putida GB-1 5867828 YP_001666393.1 CDS PputGB1_0141 NC_010322.1 144161 144778 D PFAM: cytochrome c class I; KEGG: pen:PSEEN0080 cytochrome c4; cytochrome c class I 144161..144778 Pseudomonas putida GB-1 5867829 YP_001666394.1 CDS PputGB1_0142 NC_010322.1 144929 145561 D PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN0081 thiol:disulfide interchange protein, periplasmic, alkali-inducible; DSBA oxidoreductase 144929..145561 Pseudomonas putida GB-1 5867830 YP_001666395.1 CDS PputGB1_0143 NC_010322.1 145574 146428 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN0082 DNAse I-like hydrolase; endonuclease/exonuclease/phosphatase 145574..146428 Pseudomonas putida GB-1 5867831 YP_001666396.1 CDS PputGB1_0144 NC_010322.1 146456 148384 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0083 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 146456..148384 Pseudomonas putida GB-1 5867832 YP_001666397.1 CDS PputGB1_0145 NC_010322.1 148463 149251 D PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0084 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 148463..149251 Pseudomonas putida GB-1 5867833 YP_001666398.1 CDS PputGB1_0146 NC_010322.1 149339 150937 D PFAM: EAL domain protein; KEGG: pen:PSEEN0085 signal transduction protein; EAL domain protein; EAL domain-containing protein 149339..150937 Pseudomonas putida GB-1 5867834 YP_001666399.1 CDS PputGB1_0147 NC_010322.1 150952 152718 R KEGG: pen:PSEEN0086 alginate biosynthesis sensor protein KinB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(150952..152718) Pseudomonas putida GB-1 5867835 YP_001666400.1 CDS PputGB1_0148 NC_010322.1 152730 154076 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0087 alginate biosynthesis response regulator AlgB; Fis family two component sigma-54 specific transcriptional regulator complement(152730..154076) Pseudomonas putida GB-1 5867836 YP_001666401.1 CDS PputGB1_0149 NC_010322.1 154286 155107 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_0251 osmotically inducible protein, putative; transport-associated 154286..155107 Pseudomonas putida GB-1 5867837 YP_001666402.1 CDS PputGB1_0150 NC_010322.1 155282 155572 D KEGG: pen:PSEEN0089 hypothetical protein; hypothetical protein 155282..155572 Pseudomonas putida GB-1 5867838 YP_001666403.1 CDS PputGB1_0151 NC_010322.1 155616 155777 D PFAM: protein of unknown function DUF1328; KEGG: pen:PSEEN0090 hypothetical protein; hypothetical protein 155616..155777 Pseudomonas putida GB-1 5867839 YP_001666404.1 CDS PputGB1_0152 NC_010322.1 155780 156250 D PFAM: Inhibitor of vertebrate lysozyme; KEGG: pen:PSEEN0091 hypothetical protein; inhibitor of vertebrate lysozyme 155780..156250 Pseudomonas putida GB-1 5867840 YP_001666405.1 CDS gltP NC_010322.1 156995 158323 D carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 156995..158323 Pseudomonas putida GB-1 5867841 YP_001666406.1 CDS PputGB1_0154 NC_010322.1 158467 159696 D PFAM: nucleoside recognition domain protein; KEGG: pen:PSEEN0094 hypothetical protein; nucleoside recognition domain-containing protein 158467..159696 Pseudomonas putida GB-1 5867842 YP_001666407.1 CDS PputGB1_0155 NC_010322.1 159678 160313 R KEGG: pen:PSEEN0095 lipoprotein; lipoprotein complement(159678..160313) Pseudomonas putida GB-1 5867843 YP_001666408.1 CDS PputGB1_0156 NC_010322.1 160310 161248 R PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein; hypothetical protein complement(160310..161248) Pseudomonas putida GB-1 5867844 YP_001666409.1 CDS PputGB1_0157 NC_010322.1 161252 162043 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0097 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(161252..162043) Pseudomonas putida GB-1 5867845 YP_001666410.1 CDS PputGB1_0158 NC_010322.1 162040 163173 R PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein; hypothetical protein complement(162040..163173) Pseudomonas putida GB-1 5867846 YP_001666411.1 CDS PputGB1_0159 NC_010322.1 163288 164310 R KEGG: pen:PSEEN0099 hypothetical protein; hypothetical protein complement(163288..164310) Pseudomonas putida GB-1 5867847 YP_001666412.1 CDS PputGB1_0160 NC_010322.1 164405 165811 R PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0100 metalloprotease, M16 family; peptidase M16 domain-containing protein complement(164405..165811) Pseudomonas putida GB-1 5867848 YP_001666413.1 CDS PputGB1_0161 NC_010322.1 165842 167500 R TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pen:PSEEN0101 Na+/Pi cotransporter; sodium-dependent inorganic phosphate (Pi) transporter complement(165842..167500) Pseudomonas putida GB-1 5867849 YP_001666414.1 CDS PputGB1_0162 NC_010322.1 167698 168468 R PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN0103 efflux transporter, TerC family; integral membrane protein TerC complement(167698..168468) Pseudomonas putida GB-1 5867850 YP_001666415.1 CDS PputGB1_0163 NC_010322.1 168538 169845 R TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN0104 citrate transporter; CitMHS family citrate/H+ symporter complement(168538..169845) Pseudomonas putida GB-1 5867851 YP_001666416.1 CDS PputGB1_0164 NC_010322.1 170112 170513 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN0106 hypothetical protein; glutathione-dependent formaldehyde-activating protein 170112..170513 Pseudomonas putida GB-1 5867852 YP_001666417.1 CDS PputGB1_0165 NC_010322.1 170638 172584 R KEGG: pen:PSEEN0107 hypothetical protein; hypothetical protein complement(170638..172584) Pseudomonas putida GB-1 5867853 YP_001666418.1 CDS PputGB1_0166 NC_010322.1 172590 172910 R TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0108 hypothetical protein; hypothetical protein complement(172590..172910) Pseudomonas putida GB-1 5867854 YP_001666419.1 CDS PputGB1_0167 NC_010322.1 172946 173239 R TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0110 hypothetical protein; hypothetical protein complement(172946..173239) Pseudomonas putida GB-1 5867855 YP_001666420.1 CDS PputGB1_0168 NC_010322.1 173329 173646 R TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0111 hypothetical protein; hypothetical protein complement(173329..173646) Pseudomonas putida GB-1 5867856 YP_001666421.1 CDS PputGB1_0169 NC_010322.1 173955 174170 R KEGG: pen:PSEEN0112 hypothetical protein; hypothetical protein complement(173955..174170) Pseudomonas putida GB-1 5867857 YP_001666422.1 CDS PputGB1_0170 NC_010322.1 174572 176065 R KEGG: pen:PSEEN0113 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(174572..176065) Pseudomonas putida GB-1 5867858 YP_001666423.1 CDS PputGB1_0171 NC_010322.1 176252 177688 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pen:PSEEN0114 pyridine nucleotide transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase complement(176252..177688) Pseudomonas putida GB-1 5867859 YP_001666424.1 CDS PputGB1_0172 NC_010322.1 177691 178005 R KEGG: pen:PSEEN0115 pyridine proton-translocating NAD(P) transhydrogenase; pyridine proton-translocating NAD(P) transhydrogenase complement(177691..178005) Pseudomonas putida GB-1 5867860 YP_001666425.1 CDS PputGB1_0173 NC_010322.1 178017 179138 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pen:PSEEN0116 proton-translocating NAD(P) transhydrogenase; NAD(P)(+) transhydrogenase complement(178017..179138) Pseudomonas putida GB-1 5867861 YP_001666426.1 CDS PputGB1_0174 NC_010322.1 179557 180474 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0118 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(179557..180474) Pseudomonas putida GB-1 5867862 YP_001666427.1 CDS PputGB1_0175 NC_010322.1 180636 181817 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0120 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 180636..181817 Pseudomonas putida GB-1 5867863 YP_001666428.1 CDS PputGB1_0176 NC_010322.1 181831 183051 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN0121 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 181831..183051 Pseudomonas putida GB-1 5867864 YP_001666429.1 CDS PputGB1_0178 NC_010322.1 194508 196994 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_0121 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(194508..196994) Pseudomonas putida GB-1 5867875 YP_001666430.1 CDS PputGB1_0179 NC_010322.1 197089 198045 R PFAM: FecR protein; KEGG: pfl:PFL_0126 sigma factor regulatory protein, FecR/PupR family; anti-FecI sigma factor FecR complement(197089..198045) Pseudomonas putida GB-1 5867876 YP_001666431.1 CDS PputGB1_0180 NC_010322.1 198050 198553 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_0123 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor complement(198050..198553) Pseudomonas putida GB-1 5867877 YP_001666432.1 CDS PputGB1_0181 NC_010322.1 198665 199354 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0137 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(198665..199354) Pseudomonas putida GB-1 5867878 YP_001666433.1 CDS PputGB1_0182 NC_010322.1 199628 200320 D KEGG: pen:PSEEN0138 hypothetical protein; hypothetical protein 199628..200320 Pseudomonas putida GB-1 5867879 YP_001666434.1 CDS PputGB1_0183 NC_010322.1 200331 202277 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0139 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 200331..202277 Pseudomonas putida GB-1 5867880 YP_001666435.1 CDS PputGB1_0184 NC_010322.1 202476 203852 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0145 type I toxin efflux membrane fusion protein; HlyD family type I secretion membrane fusion protein complement(202476..203852) Pseudomonas putida GB-1 5867881 YP_001666436.1 CDS PputGB1_0185 NC_010322.1 203842 205998 R KEGG: pen:PSEEN0144 type I toxin efflux ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(203842..205998) Pseudomonas putida GB-1 5867882 YP_001666437.1 CDS PputGB1_0186 NC_010322.1 207003 227264 D KEGG: pen:PSEEN0141 surface adhesion protein; TIGRFAM: conserved repeat domain protein; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; SMART: Pyrrolo-quinoline quinone; hypothetical protein 207003..227264 Pseudomonas putida GB-1 5867883 YP_001666438.1 CDS PputGB1_0187 NC_010322.1 227409 227750 D KEGG: pen:PSEEN0140 hypothetical protein; hypothetical protein 227409..227750 Pseudomonas putida GB-1 5867884 YP_001666439.1 CDS PputGB1_0188 NC_010322.1 227949 228848 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0146 taurine catabolic dioxygenase; taurine dioxygenase 227949..228848 Pseudomonas putida GB-1 5867885 YP_001666440.1 CDS PputGB1_0189 NC_010322.1 228867 229886 D KEGG: pen:PSEEN0147 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein 228867..229886 Pseudomonas putida GB-1 5867886 YP_001666441.1 CDS PputGB1_0190 NC_010322.1 229893 230756 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0148 ABC transporter, ATP-binding protein; ABC transporter-like protein 229893..230756 Pseudomonas putida GB-1 5867887 YP_001666442.1 CDS PputGB1_0191 NC_010322.1 230771 231634 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0149 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 230771..231634 Pseudomonas putida GB-1 5867888 YP_001666443.1 CDS PputGB1_0192 NC_010322.1 231845 232333 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 231845..232333 Pseudomonas putida GB-1 5867889 YP_001666444.1 CDS PputGB1_0195 NC_010322.1 233336 233683 D hypothetical protein 233336..233683 Pseudomonas putida GB-1 5867891 YP_001666445.1 CDS PputGB1_0196 NC_010322.1 233774 234397 D KEGG: psp:PSPPH_4491 hypothetical protein; hypothetical protein 233774..234397 Pseudomonas putida GB-1 5867892 YP_001666446.1 CDS PputGB1_0197 NC_010322.1 234409 234753 D hypothetical protein 234409..234753 Pseudomonas putida GB-1 5867893 YP_001666447.1 CDS PputGB1_0198 NC_010322.1 235045 235608 R KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein complement(235045..235608) Pseudomonas putida GB-1 5867894 YP_001666448.1 CDS PputGB1_0199 NC_010322.1 235815 236609 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN0151 hypothetical protein; Sel1 domain-containing protein 235815..236609 Pseudomonas putida GB-1 5867895 YP_001666449.1 CDS PputGB1_0200 NC_010322.1 236754 237206 D PFAM: regulatory protein MarR; KEGG: pen:PSEEN0152 transcriptional activator, MarR family; MarR family transcriptional regulator 236754..237206 Pseudomonas putida GB-1 5867896 YP_001666450.1 CDS PputGB1_0201 NC_010322.1 237203 239290 D PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN0153 efflux transporter, permease protein; fusaric acid resistance protein region 237203..239290 Pseudomonas putida GB-1 5867897 YP_001666451.1 CDS PputGB1_0202 NC_010322.1 239287 239499 D PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN0154 hypothetical protein; hypothetical protein 239287..239499 Pseudomonas putida GB-1 5867898 YP_001666452.1 CDS PputGB1_0203 NC_010322.1 239496 240371 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0155 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 239496..240371 Pseudomonas putida GB-1 5867899 YP_001666453.1 CDS PputGB1_0204 NC_010322.1 240368 241786 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0156 efflux transporter, outer membrane protein; RND efflux system outer membrane lipoprotein 240368..241786 Pseudomonas putida GB-1 5867900 YP_001666454.1 CDS PputGB1_0205 NC_010322.1 241895 243838 D PFAM: cytochrome c class I; iron permease FTR1; KEGG: pen:PSEEN5342 cytochrome c protein; cytochrome c class I 241895..243838 Pseudomonas putida GB-1 5867901 YP_001666455.1 CDS PputGB1_0206 NC_010322.1 243876 244121 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5358 hypothetical protein; hypothetical protein complement(243876..244121) Pseudomonas putida GB-1 5867902 YP_001666456.1 CDS PputGB1_0207 NC_010322.1 244191 244490 R KEGG: pen:PSEEN5357 hypothetical protein; hypothetical protein complement(244191..244490) Pseudomonas putida GB-1 5867903 YP_001666457.1 CDS PputGB1_0208 NC_010322.1 244639 245301 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5356 glutathione S-transferase; glutathione S-transferase domain-containing protein 244639..245301 Pseudomonas putida GB-1 5867904 YP_001666458.1 CDS PputGB1_0209 NC_010322.1 245336 246730 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(245336..246730) Pseudomonas putida GB-1 5867905 YP_001666459.1 CDS PputGB1_0210 NC_010322.1 247027 247770 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pen:PSEEN5354 alginate biosynthesis regulatory protein; LytTR family two component transcriptional regulator 247027..247770 Pseudomonas putida GB-1 5867906 YP_001666460.1 CDS hemC NC_010322.1 247946 248887 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 247946..248887 Pseudomonas putida GB-1 5867907 YP_001666461.1 CDS PputGB1_0212 NC_010322.1 248884 249651 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 248884..249651 Pseudomonas putida GB-1 5867908 YP_001666462.1 CDS PputGB1_0213 NC_010322.1 249697 250797 D PFAM: protein of unknown function DUF513 hemX; KEGG: pen:PSEEN5351 uroporphyrin-III C-methyltransferase HemX; hypothetical protein 249697..250797 Pseudomonas putida GB-1 5867909 YP_001666463.1 CDS PputGB1_0214 NC_010322.1 250794 252032 D PFAM: HemY domain protein; KEGG: pen:PSEEN5350 HemY protein; HemY domain-containing protein 250794..252032 Pseudomonas putida GB-1 5867910 YP_001666464.1 CDS PputGB1_0215 NC_010322.1 252254 252760 D PFAM: Disulphide bond formation protein DsbB; KEGG: pen:PSEEN0158 disulfide bond formation protein B1 (disulfide oxidoreductase 1); disulfide bond formation protein DsbB 252254..252760 Pseudomonas putida GB-1 5867911 YP_001666465.1 CDS PputGB1_0216 NC_010322.1 252992 253462 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 252992..253462 Pseudomonas putida GB-1 5867912 YP_001666466.1 CDS PputGB1_0217 NC_010322.1 253472 254110 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0160 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(253472..254110) Pseudomonas putida GB-1 5867913 YP_001666467.1 CDS PputGB1_0218 NC_010322.1 254289 255356 D KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; alginate regulatory protein AlgP 254289..255356 Pseudomonas putida GB-1 5867914 YP_001666468.1 CDS PputGB1_0219 NC_010322.1 255332 255814 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0162 hypothetical protein; hypothetical protein complement(255332..255814) Pseudomonas putida GB-1 5867915 YP_001666469.1 CDS PputGB1_0220 NC_010322.1 255928 257775 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0163 ABC transporter, ATP-binding protein; ABC transporter-like protein 255928..257775 Pseudomonas putida GB-1 5867916 YP_001666470.1 CDS PputGB1_0221 NC_010322.1 257775 258362 D KEGG: pen:PSEEN0164 hypothetical protein; hypothetical protein 257775..258362 Pseudomonas putida GB-1 5867917 YP_001666471.1 CDS PputGB1_0222 NC_010322.1 258497 259129 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0165 transporter, LysE family; lysine exporter protein LysE/YggA 258497..259129 Pseudomonas putida GB-1 5867918 YP_001666472.1 CDS PputGB1_0223 NC_010322.1 259201 259956 R PFAM: band 7 protein; KEGG: pen:PSEEN0166 hypothetical protein; hypothetical protein complement(259201..259956) Pseudomonas putida GB-1 5867919 YP_001666473.1 CDS PputGB1_0224 NC_010322.1 259959 261302 R PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN0167 hypothetical protein; hypothetical protein complement(259959..261302) Pseudomonas putida GB-1 5867920 YP_001666474.1 CDS PputGB1_0225 NC_010322.1 261401 261859 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN0168 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 261401..261859 Pseudomonas putida GB-1 5867921 YP_001666475.1 CDS PputGB1_0226 NC_010322.1 261921 262163 D KEGG: pen:PSEEN0169 hypothetical protein; hypothetical protein 261921..262163 Pseudomonas putida GB-1 5867922 YP_001666476.1 CDS PputGB1_0227 NC_010322.1 262233 262871 D KEGG: pen:PSEEN0170 hypothetical protein; hypothetical protein 262233..262871 Pseudomonas putida GB-1 5867923 YP_001666477.1 CDS PputGB1_0228 NC_010322.1 262878 263315 R PFAM: CBS domain containing protein; KEGG: pen:PSEEN0171 hypothetical protein; hypothetical protein complement(262878..263315) Pseudomonas putida GB-1 5867924 YP_001666478.1 CDS PputGB1_0229 NC_010322.1 263486 265216 R TIGRFAM: dipeptidase; PFAM: peptidase M20; KEGG: pen:PSEEN0172 dipeptidase; hypothetical protein complement(263486..265216) Pseudomonas putida GB-1 5867925 YP_001666479.1 CDS PputGB1_0230 NC_010322.1 265566 266429 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0180 alkyl sulfate ester ABC transporter AstC, ATP-binding protein; ABC transporter-like protein complement(265566..266429) Pseudomonas putida GB-1 5867927 YP_001666480.1 CDS PputGB1_0231 NC_010322.1 266426 268030 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0181 alkyl sulfate ester ABC transporter AstB, permease protein; binding-protein-dependent transport system inner membrane protein complement(266426..268030) Pseudomonas putida GB-1 5867928 YP_001666481.1 CDS PputGB1_0232 NC_010322.1 268328 269365 D PFAM: NMT1/THI5 like domain protein; KEGG: pen:PSEEN0182 aryl sulfate ester ABC transporter AstR, periplasmic binding protein; NMT1/THI5-like domain-containing protein 268328..269365 Pseudomonas putida GB-1 5867929 YP_001666482.1 CDS PputGB1_0233 NC_010322.1 269406 270311 D PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0183 alkylsulfatase AtsK; taurine dioxygenase 269406..270311 Pseudomonas putida GB-1 5867930 YP_001666483.1 CDS PputGB1_0234 NC_010322.1 270430 271344 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0184 transcritpional regulator, LysR family; LysR family transcriptional regulator complement(270430..271344) Pseudomonas putida GB-1 5867931 YP_001666484.1 CDS PputGB1_0235 NC_010322.1 271537 273873 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0186 TonB-dependent receptor; TonB-dependent receptor 271537..273873 Pseudomonas putida GB-1 5867932 YP_001666485.1 CDS PputGB1_0236 NC_010322.1 273891 275567 D PFAM: Arylsulfotransferase; KEGG: pen:PSEEN0187 arylsulfotransferase; arylsulfotransferase 273891..275567 Pseudomonas putida GB-1 5867933 YP_001666486.1 CDS gabD NC_010322.1 275860 277302 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 275860..277302 Pseudomonas putida GB-1 5867934 YP_001666487.1 CDS PputGB1_0238 NC_010322.1 277484 278761 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 277484..278761 Pseudomonas putida GB-1 5867935 YP_001666488.1 CDS PputGB1_0239 NC_010322.1 278900 280138 D PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0192 response regulator; putative signal transduction protein 278900..280138 Pseudomonas putida GB-1 5867936 YP_001666489.1 CDS PputGB1_0240 NC_010322.1 280197 281225 R KEGG: pen:PSEEN0195 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(280197..281225) Pseudomonas putida GB-1 5867937 YP_001666490.1 CDS PputGB1_0241 NC_010322.1 281325 282509 R PFAM: fatty acid desaturase; KEGG: pen:PSEEN0196 fatty acid desaturase; fatty acid desaturase complement(281325..282509) Pseudomonas putida GB-1 5867938 YP_001666491.1 CDS PputGB1_0242 NC_010322.1 282750 284645 D KEGG: pen:PSEEN0197 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 282750..284645 Pseudomonas putida GB-1 5867939 YP_001666492.1 CDS PputGB1_0243 NC_010322.1 284762 285406 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0198 D-methionine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(284762..285406) Pseudomonas putida GB-1 5867940 YP_001666493.1 CDS PputGB1_0244 NC_010322.1 285396 286505 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0199 D-methionine ABC transporter MetN, ATP-binding protein; ABC transporter-like protein complement(285396..286505) Pseudomonas putida GB-1 5867941 YP_001666494.1 CDS PputGB1_0245 NC_010322.1 286507 287307 R PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0200 D-methionine-binding periplasmic lipoprotein MetQ; NLPA lipoprotein complement(286507..287307) Pseudomonas putida GB-1 5867942 YP_001666495.1 CDS PputGB1_0246 NC_010322.1 287300 288691 R KEGG: pen:PSEEN0201 monooxygenase; monooxygenase complement(287300..288691) Pseudomonas putida GB-1 5867943 YP_001666496.1 CDS PputGB1_0247 NC_010322.1 288691 289872 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0202 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase complement(288691..289872) Pseudomonas putida GB-1 5867944 YP_001666497.1 CDS PputGB1_0248 NC_010322.1 290026 291267 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0203 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase complement(290026..291267) Pseudomonas putida GB-1 5867945 YP_001666498.1 CDS PputGB1_0249 NC_010322.1 291532 292290 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0205 amino acid ABC transporter, ATP-binding protein; putative amino-acid ABC transporter ATP-binding protein YecC complement(291532..292290) Pseudomonas putida GB-1 5867946 YP_001666499.1 CDS PputGB1_0250 NC_010322.1 292293 292961 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0206 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(292293..292961) Pseudomonas putida GB-1 5867947 YP_001666500.1 CDS PputGB1_0251 NC_010322.1 292958 293752 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN0207 amino acid ABC transporter, periplasmic amino acid-binding protein; cystine transporter subunit complement(292958..293752) Pseudomonas putida GB-1 5867948 YP_001666501.1 CDS PputGB1_0252 NC_010322.1 294061 294993 D KEGG: pen:PSEEN0208 serine O-acetyltransferase; Serine O-acetyltransferase 294061..294993 Pseudomonas putida GB-1 5867949 YP_001666502.1 CDS PputGB1_0253 NC_010322.1 295222 297225 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0209 choline/glycine betaine transporter, BCCT family; choline/carnitine/betaine transporter 295222..297225 Pseudomonas putida GB-1 5867950 YP_001666503.1 CDS tauD NC_010322.1 297352 298185 R catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase complement(297352..298185) Pseudomonas putida GB-1 5867951 YP_001666504.1 CDS PputGB1_0255 NC_010322.1 298234 299073 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0211 taurine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(298234..299073) Pseudomonas putida GB-1 5867952 YP_001666505.1 CDS tauB NC_010322.1 299070 299858 R Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit complement(299070..299858) Pseudomonas putida GB-1 5867953 YP_001666506.1 CDS PputGB1_0257 NC_010322.1 299872 300843 R KEGG: pen:PSEEN0213 taurine ABC transporter, periplasmic taurine-binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; taurine ABC transporter periplasmic binding protein complement(299872..300843) Pseudomonas putida GB-1 5867954 YP_001666507.1 CDS PputGB1_0258 NC_010322.1 301352 302680 D PFAM: outer membrane porin; KEGG: pen:PSEEN0214 outer membrane porin OprE; outer membrane porin 301352..302680 Pseudomonas putida GB-1 5867955 YP_001666508.1 CDS PputGB1_0259 NC_010322.1 302846 303484 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN0215 thiol-specific antioxidant protein LsfA; peroxidase 302846..303484 Pseudomonas putida GB-1 5867956 YP_001666509.1 CDS PputGB1_0260 NC_010322.1 303793 304386 D PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN0217 NAD(P)H-dependent FMN reductase; NAD(P)H-dependent FMN reductase 303793..304386 Pseudomonas putida GB-1 5867957 YP_001666510.1 CDS PputGB1_0261 NC_010322.1 304472 305437 D KEGG: pen:PSEEN0218 sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 304472..305437 Pseudomonas putida GB-1 5867958 YP_001666511.1 CDS PputGB1_0262 NC_010322.1 305498 306646 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 305498..306646 Pseudomonas putida GB-1 5867959 YP_001666512.1 CDS PputGB1_0263 NC_010322.1 306657 307454 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0220 sulfonate ABC transporter, permease protein SsuC; binding-protein-dependent transport system inner membrane protein 306657..307454 Pseudomonas putida GB-1 5867960 YP_001666513.1 CDS ssuB NC_010322.1 307451 308263 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 307451..308263 Pseudomonas putida GB-1 5867961 YP_001666514.1 CDS PputGB1_0265 NC_010322.1 308308 308523 D PFAM: TOBE domain protein; KEGG: pen:PSEEN0222 organosulfonate utilization protein SsuF; TOBE domain-containing protein 308308..308523 Pseudomonas putida GB-1 5867962 YP_001666515.1 CDS PputGB1_0266 NC_010322.1 308570 314062 R KEGG: pfo:Pfl_4544 hypothetical protein; hypothetical protein complement(308570..314062) Pseudomonas putida GB-1 5867963 YP_001666516.1 CDS PputGB1_0267 NC_010322.1 314148 314783 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN0223 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(314148..314783) Pseudomonas putida GB-1 5867964 YP_001666517.1 CDS PputGB1_0268 NC_010322.1 314783 316375 R involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase complement(314783..316375) Pseudomonas putida GB-1 5867965 YP_001666518.1 CDS PputGB1_0269 NC_010322.1 316514 316897 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0225 thioesterase; thioesterase superfamily protein complement(316514..316897) Pseudomonas putida GB-1 5867966 YP_001666519.1 CDS PputGB1_0270 NC_010322.1 316897 319221 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: pen:PSEEN0226 RNA-binding transcription accessory protein; RNA-binding S1 domain-containing protein complement(316897..319221) Pseudomonas putida GB-1 5867967 YP_001666520.1 CDS ompR NC_010322.1 319439 320179 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 319439..320179 Pseudomonas putida GB-1 5867968 YP_001666521.1 CDS PputGB1_0272 NC_010322.1 320193 321506 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0228 osmolarity sensor protein EnvZ; integral membrane sensor signal transduction histidine kinase 320193..321506 Pseudomonas putida GB-1 5867969 YP_001666522.1 CDS PputGB1_0273 NC_010322.1 321538 322443 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: pen:PSEEN0229 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(321538..322443) Pseudomonas putida GB-1 5867970 YP_001666523.1 CDS PputGB1_0274 NC_010322.1 322440 322979 R PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN0230 hypothetical protein; hypothetical protein complement(322440..322979) Pseudomonas putida GB-1 5867971 YP_001666524.1 CDS PputGB1_0275 NC_010322.1 323032 323433 D PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN0231 heat shock protein 15, ribosome associated; RNA-binding S4 domain-containing protein 323032..323433 Pseudomonas putida GB-1 5867972 YP_001666525.1 CDS PputGB1_0276 NC_010322.1 323536 324330 R PFAM: phosphoesterase PA-phosphatase related; KEGG: pen:PSEEN0232 hypothetical protein; phosphoesterase PA-phosphatase-like protein complement(323536..324330) Pseudomonas putida GB-1 5867973 YP_001666526.1 CDS hslO NC_010322.1 324450 325349 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 324450..325349 Pseudomonas putida GB-1 5867974 YP_001666527.1 CDS PputGB1_0278 NC_010322.1 325529 327070 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 325529..327070 Pseudomonas putida GB-1 5867975 YP_001666528.1 CDS PputGB1_0279 NC_010322.1 327224 327664 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0236 thioesterase; thioesterase superfamily protein 327224..327664 Pseudomonas putida GB-1 5867976 YP_001666529.1 CDS PputGB1_0280 NC_010322.1 327720 328199 R PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN0239 hypothetical protein; 17 kDa surface antigen complement(327720..328199) Pseudomonas putida GB-1 5867977 YP_001666530.1 CDS PputGB1_0281 NC_010322.1 328396 330741 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN0240 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit complement(328396..330741) Pseudomonas putida GB-1 5867978 YP_001666531.1 CDS PputGB1_0282 NC_010322.1 330747 331577 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pen:PSEEN0241 formate dehydrogenase accessory protein FdhD; formate dehydrogenase family accessory protein FdhD complement(330747..331577) Pseudomonas putida GB-1 5867979 YP_001666532.1 CDS PputGB1_0283 NC_010322.1 331754 332194 D PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: pen:PSEEN0243 hypothetical protein; LysM domain/BON superfamily protein 331754..332194 Pseudomonas putida GB-1 5867980 YP_001666533.1 CDS PputGB1_0284 NC_010322.1 332245 332907 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0244 hydrolase, haloacid dehalogenase family, subfamily IA, variant 3; HAD family hydrolase complement(332245..332907) Pseudomonas putida GB-1 5867981 YP_001666534.1 CDS nudE NC_010322.1 332972 333538 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 332972..333538 Pseudomonas putida GB-1 5867982 YP_001666535.1 CDS PputGB1_0286 NC_010322.1 333535 334353 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN0246 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 333535..334353 Pseudomonas putida GB-1 5867983 YP_001666536.1 CDS PputGB1_0287 NC_010322.1 334401 334856 R TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: pen:PSEEN0247 hypothetical protein; thioesterase domain-containing protein complement(334401..334856) Pseudomonas putida GB-1 5867984 YP_001666537.1 CDS PputGB1_0288 NC_010322.1 334856 336262 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0248 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator complement(334856..336262) Pseudomonas putida GB-1 5867985 YP_001666538.1 CDS PputGB1_0289 NC_010322.1 336259 338073 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0249 sensor histidine kinase; histidine kinase complement(336259..338073) Pseudomonas putida GB-1 5867986 YP_001666539.1 CDS PputGB1_0290 NC_010322.1 338116 338661 R KEGG: pen:PSEEN0251 dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(338116..338661) Pseudomonas putida GB-1 5867987 YP_001666540.1 CDS PputGB1_0291 NC_010322.1 338940 340046 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 338940..340046 Pseudomonas putida GB-1 5867988 YP_001666541.1 CDS PputGB1_0292 NC_010322.1 340230 340427 D KEGG: pfl:PFL_0309 hypothetical protein; hypothetical protein 340230..340427 Pseudomonas putida GB-1 5867989 YP_001666542.1 CDS PputGB1_0293 NC_010322.1 340499 342595 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0263 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(340499..342595) Pseudomonas putida GB-1 5867990 YP_001666543.1 CDS PputGB1_0294 NC_010322.1 343100 344419 D PFAM: outer membrane porin; KEGG: pen:PSEEN0264 outer membrane protein OprE3; outer membrane porin 343100..344419 Pseudomonas putida GB-1 5867991 YP_001666544.1 CDS PputGB1_0295 NC_010322.1 344450 346117 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN0265 glutamate synthase, large subunit; glutamate synthase complement(344450..346117) Pseudomonas putida GB-1 5867992 YP_001666545.1 CDS PputGB1_0296 NC_010322.1 346231 347598 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bur:Bcep18194_C7107 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(346231..347598) Pseudomonas putida GB-1 5867993 YP_001666546.1 CDS PputGB1_0297 NC_010322.1 347600 348322 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mfa:Mfla_2739 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(347600..348322) Pseudomonas putida GB-1 5867994 YP_001666547.1 CDS PputGB1_0298 NC_010322.1 348463 350760 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpt:Bpet3198 TonB-dependent outer membrane receptor; TonB-dependent siderophore receptor 348463..350760 Pseudomonas putida GB-1 5867995 YP_001666548.1 CDS PputGB1_0299 NC_010322.1 350822 351028 R KEGG: pen:PSEEN5227 hypothetical protein; hypothetical protein complement(350822..351028) Pseudomonas putida GB-1 5867996 YP_001666549.1 CDS PputGB1_0300 NC_010322.1 351417 351665 R KEGG: pen:PSEEN5218 hypothetical protein; hypothetical protein complement(351417..351665) Pseudomonas putida GB-1 5867998 YP_001666550.1 CDS PputGB1_0301 NC_010322.1 351815 352054 R hypothetical protein complement(351815..352054) Pseudomonas putida GB-1 5867999 YP_001666551.1 CDS PputGB1_0302 NC_010322.1 352081 353286 R KEGG: pen:PSEEN5211 hypothetical protein; hypothetical protein complement(352081..353286) Pseudomonas putida GB-1 5868000 YP_001666552.1 CDS PputGB1_0303 NC_010322.1 353351 354040 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(353351..354040) Pseudomonas putida GB-1 5868042 YP_001666553.1 CDS PputGB1_0304 NC_010322.1 354040 354732 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5209 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(354040..354732) Pseudomonas putida GB-1 5868043 YP_001666554.1 CDS PputGB1_0305 NC_010322.1 354787 355539 R PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5208 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(354787..355539) Pseudomonas putida GB-1 5868044 YP_001666555.1 CDS PputGB1_0306 NC_010322.1 355551 356324 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5207 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(355551..356324) Pseudomonas putida GB-1 5868045 YP_001666556.1 CDS PputGB1_0307 NC_010322.1 356966 358351 D TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5205 gamma-aminobutyrate transporter; GABA permease 356966..358351 Pseudomonas putida GB-1 5868046 YP_001666557.1 CDS PputGB1_0308 NC_010322.1 358428 358871 R KEGG: pen:PSEEN5204 hypothetical protein; hypothetical protein complement(358428..358871) Pseudomonas putida GB-1 5868047 YP_001666558.1 CDS PputGB1_0309 NC_010322.1 358932 359912 R PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN5203 polyphosphate kinase 2; hypothetical protein complement(358932..359912) Pseudomonas putida GB-1 5868048 YP_001666559.1 CDS PputGB1_0310 NC_010322.1 360248 360520 R PFAM: Fe(II) trafficking protein YggX; KEGG: pfl:PFL_0357 hypothetical protein; hypothetical protein complement(360248..360520) Pseudomonas putida GB-1 5868050 YP_001666560.1 CDS PputGB1_0311 NC_010322.1 360517 361584 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pen:PSEEN5199 A/G specific adenine glycosylase; A/G-specific adenine glycosylase complement(360517..361584) Pseudomonas putida GB-1 5868051 YP_001666561.1 CDS PputGB1_0312 NC_010322.1 361581 363827 R PFAM: AsmA family protein; KEGG: pen:PSEEN5198 AsmA protein; AsmA family protein complement(361581..363827) Pseudomonas putida GB-1 5868052 YP_001666562.1 CDS PputGB1_0313 NC_010322.1 364135 365796 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5196 permease, MFS superfamily; major facilitator superfamily transporter 364135..365796 Pseudomonas putida GB-1 5868053 YP_001666563.1 CDS hisB NC_010322.1 365967 366560 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 365967..366560 Pseudomonas putida GB-1 5868054 YP_001666564.1 CDS hisH NC_010322.1 366561 367199 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 366561..367199 Pseudomonas putida GB-1 5868055 YP_001666565.1 CDS PputGB1_0316 NC_010322.1 367200 367460 D KEGG: pen:PSEEN5193 hypothetical protein; hypothetical protein 367200..367460 Pseudomonas putida GB-1 5868056 YP_001666566.1 CDS PputGB1_0317 NC_010322.1 367488 368225 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 367488..368225 Pseudomonas putida GB-1 5868057 YP_001666567.1 CDS PputGB1_0318 NC_010322.1 368236 369006 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 368236..369006 Pseudomonas putida GB-1 5868058 YP_001666568.1 CDS PputGB1_0319 NC_010322.1 369126 370304 R KEGG: pen:PSEEN5190 glycine betaine/L-proline ABC transporter, ATP-binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; choline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; choline ABC transporter ATP-binding protein complement(369126..370304) Pseudomonas putida GB-1 5868059 YP_001666569.1 CDS PputGB1_0320 NC_010322.1 370301 371146 R TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5189 glycine betaine/L-proline ABC transporter, permease protein; choline ABC transporter permease complement(370301..371146) Pseudomonas putida GB-1 5868060 YP_001666570.1 CDS PputGB1_0321 NC_010322.1 371231 372178 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5188 glycine betaine/L-proline ABC transporter, periplasmic binding protein; choline ABC transporter periplasmic binding protein complement(371231..372178) Pseudomonas putida GB-1 5868061 YP_001666571.1 CDS PputGB1_0322 NC_010322.1 372621 373997 D KEGG: pen:PSEEN5187 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 372621..373997 Pseudomonas putida GB-1 5868062 YP_001666572.1 CDS PputGB1_0323 NC_010322.1 374447 375553 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5186 transcriptional regulator, AraC family; AraC family transcriptional regulator 374447..375553 Pseudomonas putida GB-1 5868063 YP_001666573.1 CDS PputGB1_0324 NC_010322.1 375612 375869 R KEGG: pen:PSEEN5185 hypothetical protein; hypothetical protein complement(375612..375869) Pseudomonas putida GB-1 5868064 YP_001666574.1 CDS PputGB1_0325 NC_010322.1 376135 376611 R KEGG: pen:PSEEN5184 hypothetical protein; hypothetical protein complement(376135..376611) Pseudomonas putida GB-1 5868065 YP_001666575.1 CDS PputGB1_0326 NC_010322.1 376622 377587 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(376622..377587) Pseudomonas putida GB-1 5868066 YP_001666576.1 CDS PputGB1_0327 NC_010322.1 377606 378490 R PFAM: protein of unknown function DUF849; KEGG: pen:PSEEN5182 hypothetical protein; hypothetical protein complement(377606..378490) Pseudomonas putida GB-1 5868067 YP_001666577.1 CDS PputGB1_0328 NC_010322.1 378616 379560 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5181 substrate-binding region of ABC-type glycine transport system; choline ABC transporter periplasmic binding protein complement(378616..379560) Pseudomonas putida GB-1 5868068 YP_001666578.1 CDS PputGB1_0329 NC_010322.1 379707 380651 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5180 transcriptional regulator, AraC family; AraC family transcriptional regulator 379707..380651 Pseudomonas putida GB-1 5868069 YP_001666579.1 CDS PputGB1_0330 NC_010322.1 380733 381134 R PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN5179 hypothetical protein; hypothetical protein complement(380733..381134) Pseudomonas putida GB-1 5868070 YP_001666580.1 CDS PputGB1_0331 NC_010322.1 381419 382396 D PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN5178 dipeptidase; membrane dipeptidase 381419..382396 Pseudomonas putida GB-1 5868071 YP_001666581.1 CDS PputGB1_0332 NC_010322.1 382474 383004 D KEGG: pen:PSEEN5177 hypothetical protein; hypothetical protein 382474..383004 Pseudomonas putida GB-1 5868072 YP_001666582.1 CDS PputGB1_0333 NC_010322.1 383020 385080 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN5176 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 383020..385080 Pseudomonas putida GB-1 5868073 YP_001666583.1 CDS PputGB1_0334 NC_010322.1 385289 387241 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN5175 iron-sulfur cluster-binding protein; hypothetical protein 385289..387241 Pseudomonas putida GB-1 5868074 YP_001666584.1 CDS PputGB1_0335 NC_010322.1 387241 388473 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN5174 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 387241..388473 Pseudomonas putida GB-1 5868075 YP_001666585.1 CDS PputGB1_0336 NC_010322.1 388484 389254 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN5173 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit 388484..389254 Pseudomonas putida GB-1 5868076 YP_001666586.1 CDS PputGB1_0337 NC_010322.1 390130 390954 D KEGG: psb:Psyr_4720 hypothetical protein; hypothetical protein 390130..390954 Pseudomonas putida GB-1 5868077 YP_001666587.1 CDS PputGB1_0338 NC_010322.1 390982 392274 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN5169 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein complement(390982..392274) Pseudomonas putida GB-1 5868078 YP_001666588.1 CDS PputGB1_0339 NC_010322.1 392570 393670 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN5168 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit 392570..393670 Pseudomonas putida GB-1 5868079 YP_001666589.1 CDS PputGB1_0340 NC_010322.1 393815 395440 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5167 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(393815..395440) Pseudomonas putida GB-1 5868080 YP_001666590.1 CDS PputGB1_0341 NC_010322.1 395706 395936 D KEGG: pen:PSEEN5166 hypothetical protein; hypothetical protein 395706..395936 Pseudomonas putida GB-1 5868081 YP_001666591.1 CDS PputGB1_0342 NC_010322.1 395933 396235 D PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5165 hypothetical protein; hypothetical protein 395933..396235 Pseudomonas putida GB-1 5868082 YP_001666592.1 CDS PputGB1_0343 NC_010322.1 396440 398377 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5164 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 396440..398377 Pseudomonas putida GB-1 5868083 YP_001666593.1 CDS PputGB1_0344 NC_010322.1 398431 399471 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN5163 low-specificity L-threonine aldolase; threonine aldolase complement(398431..399471) Pseudomonas putida GB-1 5868084 YP_001666594.1 CDS PputGB1_0345 NC_010322.1 399811 401064 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 399811..401064 Pseudomonas putida GB-1 5868085 YP_001666595.1 CDS PputGB1_0346 NC_010322.1 401080 402330 D TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5161 sarcosine oxidase beta subunit; sarcosine oxidase subunit beta 401080..402330 Pseudomonas putida GB-1 5868086 YP_001666596.1 CDS PputGB1_0347 NC_010322.1 402345 402680 D TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta 402345..402680 Pseudomonas putida GB-1 5868087 YP_001666597.1 CDS PputGB1_0348 NC_010322.1 402677 405691 D TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5159 sarcosine oxidase (alpha subunit) oxidoreductase protein; sarcosine oxidase subunit alpha 402677..405691 Pseudomonas putida GB-1 5868088 YP_001666598.1 CDS PputGB1_0349 NC_010322.1 405866 406498 D TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase gamma subunit; KEGG: pen:PSEEN5158 sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 405866..406498 Pseudomonas putida GB-1 5868089 YP_001666599.1 CDS PputGB1_0350 NC_010322.1 406511 407368 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 406511..407368 Pseudomonas putida GB-1 5868090 YP_001666600.1 CDS PputGB1_0351 NC_010322.1 407643 408842 D TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5156 formaldehyde dehydrogenase, glutathione-independent; formaldehyde dehydrogenase 407643..408842 Pseudomonas putida GB-1 5868091 YP_001666601.1 CDS PputGB1_0352 NC_010322.1 408885 409829 R KEGG: psb:Psyr_0343 hypothetical protein; hypothetical protein complement(408885..409829) Pseudomonas putida GB-1 5868092 YP_001666602.1 CDS PputGB1_0355 NC_010322.1 410342 411292 R KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein complement(410342..411292) Pseudomonas putida GB-1 5868093 YP_001666603.1 CDS PputGB1_0356 NC_010322.1 411493 412074 D KEGG: pen:PSEEN5155 hypothetical protein; hypothetical protein 411493..412074 Pseudomonas putida GB-1 5868094 YP_001666604.1 CDS PputGB1_0357 NC_010322.1 412309 413658 R PFAM: amino acid permease-associated region; KEGG: pae:PA0322 probable transporter; amino acid permease-associated protein complement(412309..413658) Pseudomonas putida GB-1 5868095 YP_001666605.1 CDS PputGB1_0358 NC_010322.1 413903 414790 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN5154 acyltransferase; putative acyltransferase complement(413903..414790) Pseudomonas putida GB-1 5868096 YP_001666606.1 CDS PputGB1_0359 NC_010322.1 414973 415473 D PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN5153 hypothetical protein; hypothetical protein 414973..415473 Pseudomonas putida GB-1 5868097 YP_001666607.1 CDS PputGB1_0360 NC_010322.1 415654 416334 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 415654..416334 Pseudomonas putida GB-1 5868098 YP_001666608.1 CDS PputGB1_0361 NC_010322.1 416334 417770 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 416334..417770 Pseudomonas putida GB-1 5868099 YP_001666609.1 CDS PputGB1_0362 NC_010322.1 417936 419264 D PFAM: Inner membrane CreD family protein; KEGG: pen:PSEEN5150 tolerance to colicin E2; hypothetical protein 417936..419264 Pseudomonas putida GB-1 5868100 YP_001666610.1 CDS PputGB1_0363 NC_010322.1 419431 420054 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5149 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(419431..420054) Pseudomonas putida GB-1 5868101 YP_001666611.1 CDS PputGB1_0364 NC_010322.1 420058 420726 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(420058..420726) Pseudomonas putida GB-1 5868102 YP_001666612.1 CDS PputGB1_0365 NC_010322.1 420892 423582 R KEGG: pen:PSEEN5147 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(420892..423582) Pseudomonas putida GB-1 5868103 YP_001666613.1 CDS PputGB1_0366 NC_010322.1 423855 425492 R KEGG: pen:PSEEN5146 dihydrolipoamide S-acetyltransferase, E2 component of the pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase complement(423855..425492) Pseudomonas putida GB-1 5868104 YP_001666614.1 CDS aceE NC_010322.1 425506 428151 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(425506..428151) Pseudomonas putida GB-1 5868105 YP_001666615.1 CDS PputGB1_0368 NC_010322.1 428535 431468 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 428535..431468 Pseudomonas putida GB-1 5868106 YP_001666616.1 CDS PputGB1_0369 NC_010322.1 431602 432651 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5143 ADP-heptose; LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 431602..432651 Pseudomonas putida GB-1 5868107 YP_001666617.1 CDS PputGB1_0370 NC_010322.1 432652 433710 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5142 ADP-heptose; LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I 432652..433710 Pseudomonas putida GB-1 5868108 YP_001666618.1 CDS PputGB1_0371 NC_010322.1 433710 434834 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN5141 glucosyltransferase I; glycosyl transferase group 1 protein 433710..434834 Pseudomonas putida GB-1 5868109 YP_001666619.1 CDS PputGB1_0372 NC_010322.1 434831 435637 D PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5140 lipopolysaccharide core biosynthesis; kinase for core heptose of lipopolysaccharide; lipopolysaccharide kinase 434831..435637 Pseudomonas putida GB-1 5868110 YP_001666620.1 CDS PputGB1_0373 NC_010322.1 435637 436371 D PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5139 heptose kinase WapP; lipopolysaccharide kinase 435637..436371 Pseudomonas putida GB-1 5868111 YP_001666621.1 CDS PputGB1_0374 NC_010322.1 436368 437120 D PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5138 heptose kinase WapQ; lipopolysaccharide kinase 436368..437120 Pseudomonas putida GB-1 5868112 YP_001666622.1 CDS PputGB1_0375 NC_010322.1 437120 438562 D KEGG: pen:PSEEN5137 hypothetical protein; hypothetical protein 437120..438562 Pseudomonas putida GB-1 5868113 YP_001666623.1 CDS PputGB1_0376 NC_010322.1 438607 438783 R KEGG: pen:PSEEN5136 hypothetical protein; hypothetical protein complement(438607..438783) Pseudomonas putida GB-1 5868114 YP_001666624.1 CDS PputGB1_0377 NC_010322.1 438780 439892 R PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN5135 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(438780..439892) Pseudomonas putida GB-1 5868115 YP_001666625.1 CDS PputGB1_0378 NC_010322.1 439949 442381 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN5134 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(439949..442381) Pseudomonas putida GB-1 5868116 YP_001666626.1 CDS PputGB1_0379 NC_010322.1 442600 443556 R PFAM: FecR protein; KEGG: pen:PSEEN5132 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(442600..443556) Pseudomonas putida GB-1 5868117 YP_001666627.1 CDS PputGB1_0380 NC_010322.1 443553 444071 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor complement(443553..444071) Pseudomonas putida GB-1 5868118 YP_001666628.1 CDS PputGB1_0381 NC_010322.1 444274 444984 R KEGG: pen:PSEEN5130 exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(444274..444984) Pseudomonas putida GB-1 5868119 YP_001666629.1 CDS PputGB1_0382 NC_010322.1 444981 446918 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pen:PSEEN5129 nucleotidyltransferase, CBS domain/cAMP binding; hypothetical protein complement(444981..446918) Pseudomonas putida GB-1 5868120 YP_001666630.1 CDS PputGB1_0383 NC_010322.1 447035 447571 D PFAM: response regulator receiver; KEGG: pen:PSEEN5128 response regulator; response regulator receiver protein 447035..447571 Pseudomonas putida GB-1 5868121 YP_001666631.1 CDS PputGB1_0384 NC_010322.1 447609 449786 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(447609..449786) Pseudomonas putida GB-1 5868122 YP_001666632.1 CDS PputGB1_0385 NC_010322.1 450234 450752 D PFAM: amino acid-binding ACT domain protein; KEGG: pen:PSEEN5126 hypothetical protein; amino acid-binding ACT domain-containing protein 450234..450752 Pseudomonas putida GB-1 5868123 YP_001666633.1 CDS PputGB1_0386 NC_010322.1 451085 451972 R TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5125 RarD protein; transporter DMT superfamily protein complement(451085..451972) Pseudomonas putida GB-1 5868124 YP_001666634.1 CDS PputGB1_0387 NC_010322.1 452157 453509 R KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein complement(452157..453509) Pseudomonas putida GB-1 5868125 YP_001666635.1 CDS PputGB1_0388 NC_010322.1 453527 454600 R KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein complement(453527..454600) Pseudomonas putida GB-1 5868126 YP_001666636.1 CDS PputGB1_0389 NC_010322.1 454873 455847 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(454873..455847) Pseudomonas putida GB-1 5868127 YP_001666637.1 CDS PputGB1_0390 NC_010322.1 456005 456769 R TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: pen:PSEEN5123 molybdate transport regulator ModE; ModE family transcriptional regulator complement(456005..456769) Pseudomonas putida GB-1 5868128 YP_001666638.1 CDS PputGB1_0391 NC_010322.1 456828 457559 R PFAM: phosphoribosyltransferase; KEGG: pen:PSEEN5122 competence protein ComF; phosphoribosyltransferase complement(456828..457559) Pseudomonas putida GB-1 5868129 YP_001666639.1 CDS PputGB1_0392 NC_010322.1 457649 458707 D KEGG: pen:PSEEN5121 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 457649..458707 Pseudomonas putida GB-1 5868130 YP_001666640.1 CDS PputGB1_0393 NC_010322.1 458709 459881 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 458709..459881 Pseudomonas putida GB-1 5868131 YP_001666641.1 CDS PputGB1_0394 NC_010322.1 459874 460605 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5119 biotin biosynthesis BioH; carboxylesterase 459874..460605 Pseudomonas putida GB-1 5868132 YP_001666642.1 CDS PputGB1_0395 NC_010322.1 460598 461416 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5118 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 460598..461416 Pseudomonas putida GB-1 5868133 YP_001666643.1 CDS bioD NC_010322.1 461427 462107 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 461427..462107 Pseudomonas putida GB-1 5868134 YP_001666644.1 CDS PputGB1_0397 NC_010322.1 462250 462546 D KEGG: pen:PSEEN5116 hypothetical protein; hypothetical protein 462250..462546 Pseudomonas putida GB-1 5868135 YP_001666645.1 CDS PputGB1_0398 NC_010322.1 462836 464641 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5115 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 462836..464641 Pseudomonas putida GB-1 5868136 YP_001666646.1 CDS PputGB1_0399 NC_010322.1 464825 466108 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN5114 diguanylate cyclase (GGDEF domain); diguanylate cyclase 464825..466108 Pseudomonas putida GB-1 5868137 YP_001666647.1 CDS PputGB1_0400 NC_010322.1 466233 468011 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN5113 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 466233..468011 Pseudomonas putida GB-1 5868138 YP_001666648.1 CDS PputGB1_0401 NC_010322.1 468380 469303 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5111 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(468380..469303) Pseudomonas putida GB-1 5868139 YP_001666649.1 CDS PputGB1_0402 NC_010322.1 469513 470793 D PFAM: aminotransferase class-III; KEGG: pen:PSEEN5110 acetylornithine aminotransferase; class III aminotransferase 469513..470793 Pseudomonas putida GB-1 5868140 YP_001666650.1 CDS PputGB1_0403 NC_010322.1 470945 471103 D PFAM: protein of unknown function UPF0057; KEGG: pen:PSEEN5109 hypothetical protein; hypothetical protein 470945..471103 Pseudomonas putida GB-1 5868141 YP_001666651.1 CDS PputGB1_0404 NC_010322.1 471137 472960 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: pen:PSEEN0393 prolyl oligopeptidase; peptidase S9 prolyl oligopeptidase complement(471137..472960) Pseudomonas putida GB-1 5868142 YP_001666652.1 CDS PputGB1_0405 NC_010322.1 472926 474086 R KEGG: pen:PSEEN0394 coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III); TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE complement(472926..474086) Pseudomonas putida GB-1 5868143 YP_001666653.1 CDS PputGB1_0406 NC_010322.1 474058 474333 R with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD complement(474058..474333) Pseudomonas putida GB-1 5868144 YP_001666654.1 CDS PputGB1_0407 NC_010322.1 474330 475085 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(474330..475085) Pseudomonas putida GB-1 5868145 YP_001666655.1 CDS PputGB1_0408 NC_010322.1 475095 476006 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(475095..476006) Pseudomonas putida GB-1 5868146 YP_001666656.1 CDS PputGB1_0409 NC_010322.1 476317 478617 R TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0399 coenzyme PQQ synthesis protein F; coenzyme PQQ biosynthesis protein PqqF complement(476317..478617) Pseudomonas putida GB-1 5868147 YP_001666657.1 CDS PputGB1_0410 NC_010322.1 478680 479474 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(478680..479474) Pseudomonas putida GB-1 5868148 YP_001666658.1 CDS PputGB1_0411 NC_010322.1 479489 481171 R PFAM: amine oxidase; KEGG: pen:PSEEN0401 amino oxydase; amine oxidase complement(479489..481171) Pseudomonas putida GB-1 5868149 YP_001666659.1 CDS PputGB1_0412 NC_010322.1 481341 481802 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN0407 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(481341..481802) Pseudomonas putida GB-1 5868150 YP_001666660.1 CDS PputGB1_0413 NC_010322.1 481937 482491 D KEGG: plu:plu2021 hypothetical protein; hypothetical protein 481937..482491 Pseudomonas putida GB-1 5868151 YP_001666661.1 CDS PputGB1_0414 NC_010322.1 482671 483348 D KEGG: psa:PST_3443 hypothetical protein; hypothetical protein 482671..483348 Pseudomonas putida GB-1 5868152 YP_001666662.1 CDS PputGB1_0415 NC_010322.1 483639 484418 R hypothetical protein complement(483639..484418) Pseudomonas putida GB-1 5868153 YP_001666663.1 CDS PputGB1_0416 NC_010322.1 484683 484979 R KEGG: pst:PSPTO_0535 site-specific recombinase, phage integrase family; phage integrase family site specific recombinase complement(484683..484979) Pseudomonas putida GB-1 5868154 YP_001666664.1 CDS PputGB1_0417 NC_010322.1 485198 488941 R KEGG: pen:PSEEN0412 sensory box proten ; GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(485198..488941) Pseudomonas putida GB-1 5868156 YP_001666665.1 CDS PputGB1_0418 NC_010322.1 489069 490919 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(489069..490919) Pseudomonas putida GB-1 5868157 YP_001666666.1 CDS dnaG NC_010322.1 490987 492969 R synthesizes RNA primers at the replication forks; DNA primase complement(490987..492969) Pseudomonas putida GB-1 5868158 YP_001666667.1 CDS rpsU NC_010322.1 493273 493488 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(493273..493488) Pseudomonas putida GB-1 5868159 YP_001666668.1 CDS PputGB1_0421 NC_010322.1 493693 494718 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 493693..494718 Pseudomonas putida GB-1 5868160 YP_001666669.1 CDS PputGB1_0422 NC_010322.1 494736 495305 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(494736..495305) Pseudomonas putida GB-1 5868161 YP_001666670.1 CDS PputGB1_0423 NC_010322.1 495380 495736 D TIGRFAM: dihydroneopterin aldolase; KEGG: pen:PSEEN0419 dihydroneopterin aldolase; dihydroneopterin aldolase 495380..495736 Pseudomonas putida GB-1 5868162 YP_001666671.1 CDS PputGB1_0424 NC_010322.1 495727 496236 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: pen:PSEEN0420 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 495727..496236 Pseudomonas putida GB-1 5868163 YP_001666672.1 CDS cca NC_010322.1 496355 497461 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(496355..497461) Pseudomonas putida GB-1 5868164 YP_001666673.1 CDS PputGB1_0426 NC_010322.1 497517 499085 R PFAM: SpoVR family protein; KEGG: pen:PSEEN0422 hypothetical protein; SpoVR family protein complement(497517..499085) Pseudomonas putida GB-1 5868165 YP_001666674.1 CDS PputGB1_0427 NC_010322.1 499082 500356 R PFAM: protein of unknown function DUF444; KEGG: pen:PSEEN0423 hypothetical protein; hypothetical protein complement(499082..500356) Pseudomonas putida GB-1 5868166 YP_001666675.1 CDS PputGB1_0428 NC_010322.1 500498 502420 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pen:PSEEN0424 serine protein kinase; putative serine protein kinase PrkA complement(500498..502420) Pseudomonas putida GB-1 5868167 YP_001666676.1 CDS glpE NC_010322.1 502704 503036 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase complement(502704..503036) Pseudomonas putida GB-1 5868168 YP_001666677.1 CDS apaH NC_010322.1 503051 503917 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(503051..503917) Pseudomonas putida GB-1 5868169 YP_001666678.1 CDS apaG NC_010322.1 503917 504297 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(503917..504297) Pseudomonas putida GB-1 5868170 YP_001666679.1 CDS ksgA NC_010322.1 504443 505243 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(504443..505243) Pseudomonas putida GB-1 5868171 YP_001666680.1 CDS pdxA NC_010322.1 505240 506229 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(505240..506229) Pseudomonas putida GB-1 5868172 YP_001666681.1 CDS PputGB1_0434 NC_010322.1 506226 507551 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN0430 peptidyl-prolyl cis-trans isomerase A; SurA domain-containing protein complement(506226..507551) Pseudomonas putida GB-1 5868173 YP_001666682.1 CDS PputGB1_0435 NC_010322.1 507526 510324 R PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: pen:PSEEN0431 organic solvent tolerance protein precursor OstA; organic solvent tolerance protein complement(507526..510324) Pseudomonas putida GB-1 5868174 YP_001666683.1 CDS PputGB1_0436 NC_010322.1 510455 511474 D PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN0432 phosphotransferase; aminoglycoside phosphotransferase 510455..511474 Pseudomonas putida GB-1 5868175 YP_001666684.1 CDS PputGB1_0437 NC_010322.1 511471 512142 D PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN0433 nucleotidyltransferase; nucleotidyl transferase 511471..512142 Pseudomonas putida GB-1 5868176 YP_001666685.1 CDS PputGB1_0438 NC_010322.1 512144 512911 D PFAM: heat shock protein DnaJ domain protein; KEGG: pen:PSEEN0434 DnaJ-like co-chaperone; heat shock protein DnaJ domain-containing protein 512144..512911 Pseudomonas putida GB-1 5868177 YP_001666686.1 CDS PputGB1_0439 NC_010322.1 513013 514011 R KEGG: pen:PSEEN0435 hypothetical protein; hypothetical protein complement(513013..514011) Pseudomonas putida GB-1 5868178 YP_001666687.1 CDS PputGB1_0440 NC_010322.1 514107 516494 D KEGG: pen:PSEEN0436 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; extracellular solute-binding protein family 3; PAS/PAC sensor signal transduction histidine kinase 514107..516494 Pseudomonas putida GB-1 5868179 YP_001666688.1 CDS PputGB1_0441 NC_010322.1 516505 517134 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN0437 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 516505..517134 Pseudomonas putida GB-1 5868180 YP_001666689.1 CDS PputGB1_0442 NC_010322.1 517439 518563 D KEGG: pen:PSEEN0438 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 517439..518563 Pseudomonas putida GB-1 5868181 YP_001666690.1 CDS PputGB1_0443 NC_010322.1 518604 519638 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0439 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 518604..519638 Pseudomonas putida GB-1 5868182 YP_001666691.1 CDS PputGB1_0444 NC_010322.1 519705 520952 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0440 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 519705..520952 Pseudomonas putida GB-1 5868183 YP_001666692.1 CDS PputGB1_0445 NC_010322.1 520963 521790 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0441 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 520963..521790 Pseudomonas putida GB-1 5868184 YP_001666693.1 CDS PputGB1_0446 NC_010322.1 521946 522620 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 521946..522620 Pseudomonas putida GB-1 5868185 YP_001666694.1 CDS PputGB1_0447 NC_010322.1 522617 523435 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 522617..523435 Pseudomonas putida GB-1 5868186 YP_001666695.1 CDS PputGB1_0448 NC_010322.1 523505 524986 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 523505..524986 Pseudomonas putida GB-1 5868187 YP_001666696.1 CDS PputGB1_0449 NC_010322.1 525019 526899 R KEGG: pen:PSEEN0445 esterase EstA precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter complement(525019..526899) Pseudomonas putida GB-1 5868188 YP_001666697.1 CDS PputGB1_0450 NC_010322.1 527267 527860 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 527267..527860 Pseudomonas putida GB-1 5868189 YP_001666698.1 CDS trpD NC_010322.1 527870 528919 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 527870..528919 Pseudomonas putida GB-1 5868190 YP_001666699.1 CDS trpC NC_010322.1 528916 529749 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 528916..529749 Pseudomonas putida GB-1 5868191 YP_001666700.1 CDS PputGB1_0453 NC_010322.1 529919 530623 D KEGG: pen:PSEEN0450 hypothetical protein; hypothetical protein 529919..530623 Pseudomonas putida GB-1 5868192 YP_001666701.1 CDS PputGB1_0454 NC_010322.1 530620 531264 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(530620..531264) Pseudomonas putida GB-1 5868193 YP_001666702.1 CDS PputGB1_0455 NC_010322.1 531456 531878 D PFAM: OsmC family protein; KEGG: pen:PSEEN0452 hypothetical protein; OsmC family protein 531456..531878 Pseudomonas putida GB-1 5868194 YP_001666703.1 CDS PputGB1_0456 NC_010322.1 531973 533013 R KEGG: pen:PSEEN0454 hypothetical protein; hypothetical protein complement(531973..533013) Pseudomonas putida GB-1 5868195 YP_001666704.1 CDS PputGB1_0457 NC_010322.1 533024 533671 R KEGG: pen:PSEEN0455 ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 complement(533024..533671) Pseudomonas putida GB-1 5868196 YP_001666705.1 CDS PputGB1_0458 NC_010322.1 533737 534075 R PFAM: histidine triad (HIT) protein; KEGG: pen:PSEEN0456 hypothetical protein; histidine triad (HIT) protein complement(533737..534075) Pseudomonas putida GB-1 5868197 YP_001666706.1 CDS PputGB1_0459 NC_010322.1 534139 534921 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN0457 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(534139..534921) Pseudomonas putida GB-1 5868198 YP_001666707.1 CDS PputGB1_0460 NC_010322.1 534989 535945 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN0458 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(534989..535945) Pseudomonas putida GB-1 5868199 YP_001666708.1 CDS PputGB1_0461 NC_010322.1 535974 536399 R PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_5103 hypothetical protein; hypothetical protein complement(535974..536399) Pseudomonas putida GB-1 5868200 YP_001666709.1 CDS argC NC_010322.1 536542 537576 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 536542..537576 Pseudomonas putida GB-1 5868201 YP_001666710.1 CDS PputGB1_0463 NC_010322.1 537676 538074 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 537676..538074 Pseudomonas putida GB-1 5868202 YP_001666711.1 CDS anmK NC_010322.1 538134 539225 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(538134..539225) Pseudomonas putida GB-1 5868203 YP_001666712.1 CDS PputGB1_0465 NC_010322.1 539229 540650 R PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: pen:PSEEN0463 peptidase, M23/M37 family; peptidase M23B complement(539229..540650) Pseudomonas putida GB-1 5868204 YP_001666713.1 CDS PputGB1_0466 NC_010322.1 540864 542063 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 540864..542063 Pseudomonas putida GB-1 5868205 YP_001666714.1 CDS PputGB1_0467 NC_010322.1 547808 548767 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 547808..548767 Pseudomonas putida GB-1 5868209 YP_001666715.1 CDS PputGB1_0468 NC_010322.1 548757 549506 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 548757..549506 Pseudomonas putida GB-1 5868210 YP_001666716.1 CDS PputGB1_0469 NC_010322.1 549514 549939 D KEGG: pen:PSEEN0473 hypothetical protein; hypothetical protein 549514..549939 Pseudomonas putida GB-1 5868211 YP_001666717.1 CDS PputGB1_0470 NC_010322.1 550458 551651 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 550458..551651 Pseudomonas putida GB-1 5868215 YP_001666718.1 CDS secE NC_010322.1 551826 552194 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 551826..552194 Pseudomonas putida GB-1 5868217 YP_001666719.1 CDS nusG NC_010322.1 552204 552737 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 552204..552737 Pseudomonas putida GB-1 5868218 YP_001666720.1 CDS rplK NC_010322.1 552857 553288 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 552857..553288 Pseudomonas putida GB-1 5868219 YP_001666721.1 CDS rplA NC_010322.1 553288 553983 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 553288..553983 Pseudomonas putida GB-1 5868220 YP_001666722.1 CDS rplJ NC_010322.1 554181 554681 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 554181..554681 Pseudomonas putida GB-1 5868221 YP_001666723.1 CDS rplL NC_010322.1 554759 555124 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 554759..555124 Pseudomonas putida GB-1 5868222 YP_001666724.1 CDS rpoB NC_010322.1 555344 559417 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 555344..559417 Pseudomonas putida GB-1 5868223 YP_001666725.1 CDS PputGB1_0478 NC_010322.1 559482 563681 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 559482..563681 Pseudomonas putida GB-1 5868224 YP_001666726.1 CDS rpsL NC_010322.1 563893 564264 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 563893..564264 Pseudomonas putida GB-1 5868225 YP_001666727.1 CDS PputGB1_0480 NC_010322.1 564371 564841 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 564371..564841 Pseudomonas putida GB-1 5868226 YP_001666728.1 CDS PputGB1_0481 NC_010322.1 564872 567016 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 564872..567016 Pseudomonas putida GB-1 5868227 YP_001666729.1 CDS PputGB1_0482 NC_010322.1 567044 568237 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 567044..568237 Pseudomonas putida GB-1 5868228 YP_001666730.1 CDS rpsJ NC_010322.1 568379 568690 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 568379..568690 Pseudomonas putida GB-1 5868229 YP_001666731.1 CDS rplC NC_010322.1 568771 569406 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 568771..569406 Pseudomonas putida GB-1 5868230 YP_001666732.1 CDS rplD NC_010322.1 569419 570021 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 569419..570021 Pseudomonas putida GB-1 5868231 YP_001666733.1 CDS rplW NC_010322.1 570018 570317 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 570018..570317 Pseudomonas putida GB-1 5868232 YP_001666734.1 CDS rplB NC_010322.1 570332 571156 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 570332..571156 Pseudomonas putida GB-1 5868233 YP_001666735.1 CDS rpsS NC_010322.1 571173 571448 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 571173..571448 Pseudomonas putida GB-1 5868234 YP_001666736.1 CDS rplV NC_010322.1 571460 571792 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 571460..571792 Pseudomonas putida GB-1 5868235 YP_001666737.1 CDS rpsC NC_010322.1 571806 572492 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 571806..572492 Pseudomonas putida GB-1 5868236 YP_001666738.1 CDS rplP NC_010322.1 572505 572918 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 572505..572918 Pseudomonas putida GB-1 5868237 YP_001666739.1 CDS PputGB1_0492 NC_010322.1 572915 573109 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 572915..573109 Pseudomonas putida GB-1 5868238 YP_001666740.1 CDS rpsQ NC_010322.1 573112 573378 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 573112..573378 Pseudomonas putida GB-1 5868239 YP_001666741.1 CDS rplN NC_010322.1 573402 573770 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 573402..573770 Pseudomonas putida GB-1 5868240 YP_001666742.1 CDS rplX NC_010322.1 573782 574096 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 573782..574096 Pseudomonas putida GB-1 5868241 YP_001666743.1 CDS rplE NC_010322.1 574117 574656 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 574117..574656 Pseudomonas putida GB-1 5868242 YP_001666744.1 CDS rpsN NC_010322.1 574670 574975 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 574670..574975 Pseudomonas putida GB-1 5868243 YP_001666745.1 CDS rpsH NC_010322.1 575185 575577 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 575185..575577 Pseudomonas putida GB-1 5868244 YP_001666746.1 CDS rplF NC_010322.1 575590 576123 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 575590..576123 Pseudomonas putida GB-1 5868245 YP_001666747.1 CDS rplR NC_010322.1 576134 576484 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 576134..576484 Pseudomonas putida GB-1 5868246 YP_001666748.1 CDS rpsE NC_010322.1 576488 576988 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 576488..576988 Pseudomonas putida GB-1 5868247 YP_001666749.1 CDS rpmD NC_010322.1 576991 577167 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 576991..577167 Pseudomonas putida GB-1 5868248 YP_001666750.1 CDS rplO NC_010322.1 577171 577605 D late assembly protein; 50S ribosomal protein L15 577171..577605 Pseudomonas putida GB-1 5868249 YP_001666751.1 CDS secY NC_010322.1 577606 578937 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 577606..578937 Pseudomonas putida GB-1 5868250 YP_001666752.1 CDS rpsM NC_010322.1 579214 579570 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 579214..579570 Pseudomonas putida GB-1 5868251 YP_001666753.1 CDS PputGB1_0506 NC_010322.1 579589 579978 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 579589..579978 Pseudomonas putida GB-1 5868252 YP_001666754.1 CDS rpsD NC_010322.1 579994 580614 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 579994..580614 Pseudomonas putida GB-1 5868253 YP_001666755.1 CDS PputGB1_0508 NC_010322.1 580637 581638 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 580637..581638 Pseudomonas putida GB-1 5868254 YP_001666756.1 CDS rplQ NC_010322.1 581681 582067 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 581681..582067 Pseudomonas putida GB-1 5868255 YP_001666757.1 CDS PputGB1_0510 NC_010322.1 582239 583678 D PFAM: Catalase domain protein; KEGG: pen:PSEEN0517 catalase (hydroperoxidase II)KatA; catalase 582239..583678 Pseudomonas putida GB-1 5868256 YP_001666758.1 CDS PputGB1_0511 NC_010322.1 583842 584306 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN0518 bacterioferritin; bacterioferritin 583842..584306 Pseudomonas putida GB-1 5868257 YP_001666759.1 CDS uvrA NC_010322.1 584379 587213 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(584379..587213) Pseudomonas putida GB-1 5868258 YP_001666760.1 CDS PputGB1_0513 NC_010322.1 587343 588737 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0520 transporter, MFS superfamily; major facilitator superfamily transporter 587343..588737 Pseudomonas putida GB-1 5868259 YP_001666761.1 CDS PputGB1_0514 NC_010322.1 588747 589292 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 588747..589292 Pseudomonas putida GB-1 5868260 YP_001666762.1 CDS PputGB1_0515 NC_010322.1 589425 590711 D PFAM: integrase family protein; KEGG: tcx:Tcr_0328 phage integrase; integrase family protein 589425..590711 Pseudomonas putida GB-1 5868261 YP_001666763.1 CDS PputGB1_0516 NC_010322.1 590704 592269 D PFAM: integrase family protein; KEGG: prw:PsycPRwf_1125 phage integrase family protein; integrase family protein 590704..592269 Pseudomonas putida GB-1 5868262 YP_001666764.1 CDS PputGB1_0517 NC_010322.1 592259 594328 D PFAM: integrase family protein; KEGG: tcx:Tcr_0330 putative integrase; integrase family protein 592259..594328 Pseudomonas putida GB-1 5868263 YP_001666765.1 CDS PputGB1_0518 NC_010322.1 594321 594785 D KEGG: prw:PsycPRwf_1123 hypothetical protein; hypothetical protein 594321..594785 Pseudomonas putida GB-1 5868264 YP_001666766.1 CDS PputGB1_0519 NC_010322.1 594787 595062 R PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4630 transcriptional regulator, PbsX family; helix-turn-helix domain-containing protein complement(594787..595062) Pseudomonas putida GB-1 5868265 YP_001666767.1 CDS PputGB1_0520 NC_010322.1 595148 595480 D hypothetical protein 595148..595480 Pseudomonas putida GB-1 5868266 YP_001666768.1 CDS PputGB1_0521 NC_010322.1 595525 595884 D PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein 595525..595884 Pseudomonas putida GB-1 5868267 YP_001666769.1 CDS PputGB1_0522 NC_010322.1 595912 597432 D PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 595912..597432 Pseudomonas putida GB-1 5868268 YP_001666770.1 CDS PputGB1_0523 NC_010322.1 597636 598109 D KEGG: pau:PA14_35850 hypothetical protein; hypothetical protein 597636..598109 Pseudomonas putida GB-1 5868269 YP_001666771.1 CDS PputGB1_0524 NC_010322.1 598260 599159 R KEGG: mmr:Mmar10_2162 hypothetical protein; hypothetical protein complement(598260..599159) Pseudomonas putida GB-1 5868270 YP_001666772.1 CDS PputGB1_0525 NC_010322.1 599225 600571 R KEGG: pmy:Pmen_4034 hypothetical protein; hypothetical protein complement(599225..600571) Pseudomonas putida GB-1 5868271 YP_001666773.1 CDS PputGB1_0526 NC_010322.1 600943 602076 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: mmr:Mmar10_2163 DNA (cytosine-5-)-methyltransferase; DNA-cytosine methyltransferase 600943..602076 Pseudomonas putida GB-1 5868272 YP_001666774.1 CDS PputGB1_0527 NC_010322.1 602085 603806 D KEGG: mmr:Mmar10_2161 hypothetical protein; hypothetical protein 602085..603806 Pseudomonas putida GB-1 5868273 YP_001666775.1 CDS PputGB1_0528 NC_010322.1 603834 604250 R TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: nha:Nham_2517 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr complement(603834..604250) Pseudomonas putida GB-1 5868274 YP_001666776.1 CDS PputGB1_0529 NC_010322.1 604310 605011 R KEGG: ajs:Ajs_2206 hypothetical protein; hypothetical protein complement(604310..605011) Pseudomonas putida GB-1 5868275 YP_001666777.1 CDS PputGB1_0530 NC_010322.1 605099 606649 R KEGG: rfr:Rfer_0335 hypothetical protein; hypothetical protein complement(605099..606649) Pseudomonas putida GB-1 5868276 YP_001666778.1 CDS PputGB1_0531 NC_010322.1 607390 607980 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN0563 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region 607390..607980 Pseudomonas putida GB-1 5868277 YP_001666779.1 CDS PputGB1_0532 NC_010322.1 608029 610458 D KEGG: pen:PSEEN0564 formate dehydrogenase-N major subunit, anaerobic; selenopeptide; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 608029..610458 Pseudomonas putida GB-1 5868278 YP_001666780.1 CDS PputGB1_0533 NC_010322.1 610458 611408 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: pen:PSEEN0565 formate dehydrogenase-O, Fe-S subunit; formate dehydrogenase subunit beta 610458..611408 Pseudomonas putida GB-1 5868279 YP_001666781.1 CDS PputGB1_0534 NC_010322.1 611405 612061 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pen:PSEEN0566 formate dehydrogenase-O, cytochrome b556 (FDO) subunit; formate dehydrogenase subunit gamma 611405..612061 Pseudomonas putida GB-1 5868280 YP_001666782.1 CDS PputGB1_0535 NC_010322.1 612066 612986 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: pen:PSEEN0567 formate dehydrogenase formation protein; formate dehydrogenase accessory protein FdhE 612066..612986 Pseudomonas putida GB-1 5868281 YP_001666783.1 CDS PputGB1_0536 NC_010322.1 613083 614510 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 613083..614510 Pseudomonas putida GB-1 5868282 YP_001666784.1 CDS PputGB1_0537 NC_010322.1 614507 616429 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: pen:PSEEN0569 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 614507..616429 Pseudomonas putida GB-1 5868283 YP_001666785.1 CDS PputGB1_0538 NC_010322.1 616556 617554 R PFAM: Asparaginase/glutaminase; KEGG: pen:PSEEN0570 L-asparaginase, type I; asparaginase complement(616556..617554) Pseudomonas putida GB-1 5868284 YP_001666786.1 CDS PputGB1_0539 NC_010322.1 617617 619059 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pen:PSEEN0571 sodium/alanine symporter; amino acid carrier protein complement(617617..619059) Pseudomonas putida GB-1 5868285 YP_001666787.1 CDS PputGB1_0540 NC_010322.1 619237 620046 D KEGG: pen:PSEEN0572 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator 619237..620046 Pseudomonas putida GB-1 5868286 YP_001666788.1 CDS PputGB1_0541 NC_010322.1 620057 620902 R KEGG: pen:PSEEN0573 hypothetical protein; hypothetical protein complement(620057..620902) Pseudomonas putida GB-1 5868287 YP_001666789.1 CDS PputGB1_0542 NC_010322.1 620911 621702 R PFAM: protein of unknown function DUF81; KEGG: nme:NMB0432 hypothetical protein; hypothetical protein complement(620911..621702) Pseudomonas putida GB-1 5868288 YP_001666790.1 CDS PputGB1_0543 NC_010322.1 621720 621911 R hypothetical protein complement(621720..621911) Pseudomonas putida GB-1 5868289 YP_001666791.1 CDS PputGB1_0544 NC_010322.1 621962 622759 R hypothetical protein complement(621962..622759) Pseudomonas putida GB-1 5868290 YP_001666792.1 CDS PputGB1_0545 NC_010322.1 622975 623901 D PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0574 dTDP-4-rhamnose reductase-related protein; dTDP-4-dehydrorhamnose reductase 622975..623901 Pseudomonas putida GB-1 5868291 YP_001666793.1 CDS PputGB1_0546 NC_010322.1 623894 624826 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pen:PSEEN0575 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 623894..624826 Pseudomonas putida GB-1 5868292 YP_001666794.1 CDS PputGB1_0547 NC_010322.1 624855 625298 R PFAM: helix-turn-helix HxlR type; KEGG: pen:PSEEN0576 hypothetical protein; HxlR family transcriptional regulator complement(624855..625298) Pseudomonas putida GB-1 5868293 YP_001666795.1 CDS PputGB1_0548 NC_010322.1 625400 626605 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0577 transport protein, MFS superfamily; major facilitator superfamily transporter 625400..626605 Pseudomonas putida GB-1 5868294 YP_001666796.1 CDS PputGB1_0549 NC_010322.1 626593 627276 R PFAM: OmpW family protein; KEGG: pen:PSEEN0578 outer membrane protein OprG; OmpW family protein complement(626593..627276) Pseudomonas putida GB-1 5868295 YP_001666797.1 CDS PputGB1_0550 NC_010322.1 627386 627958 R KEGG: pen:PSEEN0579 lipoprotein; lipoprotein complement(627386..627958) Pseudomonas putida GB-1 5868296 YP_001666798.1 CDS PputGB1_0551 NC_010322.1 627968 629233 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein complement(627968..629233) Pseudomonas putida GB-1 5868297 YP_001666799.1 CDS PputGB1_0552 NC_010322.1 629233 629943 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein complement(629233..629943) Pseudomonas putida GB-1 5868298 YP_001666800.1 CDS PputGB1_0553 NC_010322.1 629944 630519 R KEGG: pen:PSEEN0582 hypothetical protein; hypothetical protein complement(629944..630519) Pseudomonas putida GB-1 5868299 YP_001666801.1 CDS PputGB1_0554 NC_010322.1 630650 631009 D KEGG: pen:PSEEN0583 hypothetical protein; hypothetical protein 630650..631009 Pseudomonas putida GB-1 5868300 YP_001666802.1 CDS PputGB1_0555 NC_010322.1 631087 632571 D hypothetical protein 631087..632571 Pseudomonas putida GB-1 5868301 YP_001666803.1 CDS PputGB1_0556 NC_010322.1 632633 633505 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0584 thioredoxin; thioredoxin complement(632633..633505) Pseudomonas putida GB-1 5868302 YP_001666804.1 CDS PputGB1_0557 NC_010322.1 633537 634196 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN0585 hypothetical protein; type 12 methyltransferase complement(633537..634196) Pseudomonas putida GB-1 5868303 YP_001666805.1 CDS PputGB1_0558 NC_010322.1 634197 634649 R KEGG: pen:PSEEN0586 hypothetical protein; hypothetical protein complement(634197..634649) Pseudomonas putida GB-1 5868304 YP_001666806.1 CDS nrdR NC_010322.1 634756 635220 D PFAM: ATP-cone domain protein; KEGG: pen:PSEEN0587 hypothetical protein; transcriptional regulator NrdR 634756..635220 Pseudomonas putida GB-1 5868305 YP_001666807.1 CDS PputGB1_0560 NC_010322.1 635223 636353 D KEGG: pen:PSEEN0588 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 635223..636353 Pseudomonas putida GB-1 5868306 YP_001666808.1 CDS PputGB1_0561 NC_010322.1 636397 637062 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 636397..637062 Pseudomonas putida GB-1 5868307 YP_001666809.1 CDS PputGB1_0562 NC_010322.1 637081 638172 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 637081..638172 Pseudomonas putida GB-1 5868308 YP_001666810.1 CDS ribH NC_010322.1 638264 638740 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 638264..638740 Pseudomonas putida GB-1 5868309 YP_001666811.1 CDS nusB NC_010322.1 638737 639237 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 638737..639237 Pseudomonas putida GB-1 5868310 YP_001666812.1 CDS PputGB1_0565 NC_010322.1 639256 640224 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 639256..640224 Pseudomonas putida GB-1 5868311 YP_001666813.1 CDS PputGB1_0566 NC_010322.1 640221 640724 D PFAM: phosphatidylglycerophosphatase A; KEGG: pen:PSEEN0594 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 640221..640724 Pseudomonas putida GB-1 5868312 YP_001666814.1 CDS PputGB1_0567 NC_010322.1 640741 641484 D KEGG: pen:PSEEN0595 hypothetical protein; hypothetical protein 640741..641484 Pseudomonas putida GB-1 5868313 YP_001666815.1 CDS ribA NC_010322.1 641614 642231 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 641614..642231 Pseudomonas putida GB-1 5868314 YP_001666816.1 CDS PputGB1_0569 NC_010322.1 642228 642647 D KEGG: pen:PSEEN0597 hypothetical protein; hypothetical protein 642228..642647 Pseudomonas putida GB-1 5868315 YP_001666817.1 CDS PputGB1_0570 NC_010322.1 642647 643459 D PFAM: periplasmic binding protein; KEGG: pen:PSEEN0598 periplasmic cobalamin-binding protein HutB; periplasmic binding protein 642647..643459 Pseudomonas putida GB-1 5868316 YP_001666818.1 CDS PputGB1_0571 NC_010322.1 643437 645323 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0599 cobalamine TonB-dependent receptor; TonB-dependent receptor plug complement(643437..645323) Pseudomonas putida GB-1 5868317 YP_001666819.1 CDS PputGB1_0572 NC_010322.1 645434 647329 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(645434..647329) Pseudomonas putida GB-1 5868318 YP_001666820.1 CDS PputGB1_0573 NC_010322.1 647436 648323 R PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0601 geranyltranstransferase; polyprenyl synthetase complement(647436..648323) Pseudomonas putida GB-1 5868319 YP_001666821.1 CDS PputGB1_0574 NC_010322.1 648320 648562 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(648320..648562) Pseudomonas putida GB-1 5868320 YP_001666822.1 CDS ribB NC_010322.1 648760 649410 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(648760..649410) Pseudomonas putida GB-1 5868321 YP_001666823.1 CDS PputGB1_0576 NC_010322.1 649725 650930 D PFAM: protein of unknown function UPF0027; KEGG: pen:PSEEN0615 hypothetical protein; hypothetical protein 649725..650930 Pseudomonas putida GB-1 5868322 YP_001666824.1 CDS PputGB1_0577 NC_010322.1 650967 651857 R PFAM: putative esterase; KEGG: pen:PSEEN0617 hypothetical protein; putative esterase complement(650967..651857) Pseudomonas putida GB-1 5868323 YP_001666825.1 CDS PputGB1_0578 NC_010322.1 651940 653286 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pae:PA2687 two-component sensor PfeS; integral membrane sensor signal transduction histidine kinase complement(651940..653286) Pseudomonas putida GB-1 5868324 YP_001666826.1 CDS PputGB1_0579 NC_010322.1 653286 653978 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pae:PA2686 two-component response regulator PfeR; two component transcriptional regulator complement(653286..653978) Pseudomonas putida GB-1 5868325 YP_001666827.1 CDS PputGB1_0580 NC_010322.1 654161 656338 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: csa:Csal_2539 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 654161..656338 Pseudomonas putida GB-1 5868326 YP_001666828.1 CDS PputGB1_0581 NC_010322.1 656627 657838 D PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1; glycosyl transferase group 1 protein 656627..657838 Pseudomonas putida GB-1 5868327 YP_001666829.1 CDS PputGB1_0582 NC_010322.1 658113 658814 R KEGG: pen:PSEEN0625 transcriptional regulator; transcriptional regulator complement(658113..658814) Pseudomonas putida GB-1 5868328 YP_001666830.1 CDS PputGB1_0583 NC_010322.1 659001 659528 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(659001..659528) Pseudomonas putida GB-1 5868329 YP_001666831.1 CDS PputGB1_0584 NC_010322.1 659622 660437 R PFAM: protein of unknown function DUF980; KEGG: pen:PSEEN0627 zinc-dependent peptidase (M family); hypothetical protein complement(659622..660437) Pseudomonas putida GB-1 5868330 YP_001666832.1 CDS PputGB1_0585 NC_010322.1 660459 661106 R PFAM: SNARE associated Golgi protein; KEGG: pen:PSEEN0628 hypothetical protein; hypothetical protein complement(660459..661106) Pseudomonas putida GB-1 5868331 YP_001666833.1 CDS PputGB1_0586 NC_010322.1 661294 661752 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0630 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(661294..661752) Pseudomonas putida GB-1 5868332 YP_001666834.1 CDS PputGB1_0587 NC_010322.1 661861 662679 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(661861..662679) Pseudomonas putida GB-1 5868333 YP_001666835.1 CDS PputGB1_0588 NC_010322.1 662688 664082 R PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pen:PSEEN0632 ethanolamine ammonia-lyase, heavy chain; ethanolamine ammonia lyase large subunit complement(662688..664082) Pseudomonas putida GB-1 5868334 YP_001666836.1 CDS PputGB1_0589 NC_010322.1 664129 665577 R TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0633 transport protein; ethanolamine transporter complement(664129..665577) Pseudomonas putida GB-1 5868335 YP_001666837.1 CDS PputGB1_0590 NC_010322.1 665804 667324 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0634 NAD+ dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(665804..667324) Pseudomonas putida GB-1 5868336 YP_001666838.1 CDS PputGB1_0591 NC_010322.1 667579 669594 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0635 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 667579..669594 Pseudomonas putida GB-1 5868337 YP_001666839.1 CDS PputGB1_0592 NC_010322.1 669661 671010 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN0636 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate 669661..671010 Pseudomonas putida GB-1 5868338 YP_001666840.1 CDS PputGB1_0593 NC_010322.1 671007 671636 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pen:PSEEN0637 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 671007..671636 Pseudomonas putida GB-1 5868339 YP_001666841.1 CDS PputGB1_0594 NC_010322.1 671633 671920 D PFAM: protein of unknown function DUF1375; KEGG: pen:PSEEN0638 hypothetical protein; hypothetical protein 671633..671920 Pseudomonas putida GB-1 5868340 YP_001666842.1 CDS PputGB1_0595 NC_010322.1 671969 672613 R KEGG: pen:PSEEN4841 hypothetical protein; hypothetical protein complement(671969..672613) Pseudomonas putida GB-1 5868341 YP_001666843.1 CDS PputGB1_0596 NC_010322.1 672641 674374 R PFAM: Peptidase C13, legumain asparaginyl peptidase; MORN repeat-containing protein; KEGG: pen:PSEEN4840 hypothetical protein; peptidase C13, legumain asparaginyl peptidase complement(672641..674374) Pseudomonas putida GB-1 5868342 YP_001666844.1 CDS PputGB1_0597 NC_010322.1 674601 675689 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pap:PSPA7_0934 2,3-butanediol dehydrogenase; alcohol dehydrogenase complement(674601..675689) Pseudomonas putida GB-1 5868343 YP_001666845.1 CDS PputGB1_0598 NC_010322.1 675718 676824 R PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: pap:PSPA7_0935 probable hydrolase; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(675718..676824) Pseudomonas putida GB-1 5868344 YP_001666846.1 CDS PputGB1_0599 NC_010322.1 676821 677843 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: pap:PSPA7_0936 acetoin catabolism protein AcoB; transketolase central region complement(676821..677843) Pseudomonas putida GB-1 5868345 YP_001666847.1 CDS PputGB1_0600 NC_010322.1 677877 678854 R PFAM: dehydrogenase E1 component; KEGG: pfl:PFL_2170 acetoin dehydrogenase E1 component, alpha subunit; pyruvate dehydrogenase complement(677877..678854) Pseudomonas putida GB-1 5868346 YP_001666848.1 CDS PputGB1_0601 NC_010322.1 678877 679932 R PFAM: ATP-NAD/AcoX kinase; KEGG: pae:PA4149 hypothetical protein; ATP-NAD/AcoX kinase complement(678877..679932) Pseudomonas putida GB-1 5868347 YP_001666849.1 CDS PputGB1_0602 NC_010322.1 680216 682069 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pap:PSPA7_0941 transcriptional regulator AcoR; Fis family GAF modulated sigma54 specific transcriptional regulator 680216..682069 Pseudomonas putida GB-1 5868348 YP_001666850.1 CDS PputGB1_0603 NC_010322.1 682160 683515 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(682160..683515) Pseudomonas putida GB-1 5868349 YP_001666851.1 CDS PputGB1_0604 NC_010322.1 683533 683994 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(683533..683994) Pseudomonas putida GB-1 5868350 YP_001666852.1 CDS PputGB1_0605 NC_010322.1 684094 684549 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(684094..684549) Pseudomonas putida GB-1 5868351 YP_001666853.1 CDS dipZ NC_010322.1 684729 686501 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein complement(684729..686501) Pseudomonas putida GB-1 5868352 YP_001666854.1 CDS PputGB1_0607 NC_010322.1 686843 688804 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4853 methyl-accepting chemotaxis transducer for inorganic phosphate CtpL; methyl-accepting chemotaxis sensory transducer complement(686843..688804) Pseudomonas putida GB-1 5868353 YP_001666855.1 CDS PputGB1_0608 NC_010322.1 688929 690287 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN4852 diguanylate cyclase (GGDEF domain)/response regulator; response regulator receiver modulated diguanylate cyclase complement(688929..690287) Pseudomonas putida GB-1 5868354 YP_001666856.1 CDS PputGB1_0609 NC_010322.1 690536 691603 D KEGG: pen:PSEEN4851 hypothetical protein; hypothetical protein 690536..691603 Pseudomonas putida GB-1 5868355 YP_001666857.1 CDS PputGB1_0610 NC_010322.1 691606 692142 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4850 IPP isomerase type 1; NUDIX hydrolase 691606..692142 Pseudomonas putida GB-1 5868356 YP_001666858.1 CDS PputGB1_0611 NC_010322.1 692470 692841 D involved in start site selection during the initiation of translation; translation initiation factor Sui1 692470..692841 Pseudomonas putida GB-1 5868357 YP_001666859.1 CDS PputGB1_0612 NC_010322.1 692993 694906 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 692993..694906 Pseudomonas putida GB-1 5868358 YP_001666860.1 CDS PputGB1_0613 NC_010322.1 695118 695573 D KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein 695118..695573 Pseudomonas putida GB-1 5868359 YP_001666861.1 CDS PputGB1_0614 NC_010322.1 695662 696999 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; MATE efflux family protein complement(695662..696999) Pseudomonas putida GB-1 5868360 YP_001666862.1 CDS PputGB1_0615 NC_010322.1 697178 702076 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pen:PSEEN4844 hypothetical protein; alpha-2-macroglobulin domain-containing protein 697178..702076 Pseudomonas putida GB-1 5868361 YP_001666863.1 CDS PputGB1_0616 NC_010322.1 702241 702534 R KEGG: pen:PSEEN4843 hypothetical protein; hypothetical protein complement(702241..702534) Pseudomonas putida GB-1 5868362 YP_001666864.1 CDS PputGB1_0617 NC_010322.1 702612 704966 D penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 702612..704966 Pseudomonas putida GB-1 5868363 YP_001666865.1 CDS PputGB1_0618 NC_010322.1 705059 706723 D PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pen:PSEEN0640 hypothetical protein; polypeptide-transport-associated domain-containing protein 705059..706723 Pseudomonas putida GB-1 5868364 YP_001666866.1 CDS PputGB1_0619 NC_010322.1 706763 707539 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN0653 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(706763..707539) Pseudomonas putida GB-1 5868365 YP_001666867.1 CDS PputGB1_0620 NC_010322.1 707659 708129 R PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV complement(707659..708129) Pseudomonas putida GB-1 5868366 YP_001666868.1 CDS PputGB1_0621 NC_010322.1 708343 708912 R KEGG: pen:PSEEN0658 lipoprotein; lipoprotein complement(708343..708912) Pseudomonas putida GB-1 5868367 YP_001666869.1 CDS PputGB1_0622 NC_010322.1 708932 709567 R KEGG: pen:PSEEN0659 lipoprotein; hypothetical protein complement(708932..709567) Pseudomonas putida GB-1 5868368 YP_001666870.1 CDS PputGB1_0623 NC_010322.1 709590 710339 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0660 methyltransferase; type 12 methyltransferase complement(709590..710339) Pseudomonas putida GB-1 5868369 YP_001666871.1 CDS PputGB1_0624 NC_010322.1 710336 710641 R KEGG: pen:PSEEN0661 hypothetical protein; hypothetical protein complement(710336..710641) Pseudomonas putida GB-1 5868370 YP_001666872.1 CDS PputGB1_0625 NC_010322.1 710700 711551 R PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN0662 hypothetical protein; dehydratase complement(710700..711551) Pseudomonas putida GB-1 5868371 YP_001666873.1 CDS fabG NC_010322.1 711554 712906 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(711554..712906) Pseudomonas putida GB-1 5868372 YP_001666874.1 CDS PputGB1_0627 NC_010322.1 713024 714301 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 713024..714301 Pseudomonas putida GB-1 5868373 YP_001666875.1 CDS PputGB1_0628 NC_010322.1 714368 715147 D PFAM: AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN0665 transcriptional regulator, AraC family; AraC family transcriptional regulator 714368..715147 Pseudomonas putida GB-1 5868374 YP_001666876.1 CDS PputGB1_0629 NC_010322.1 715213 717156 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0666 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(715213..717156) Pseudomonas putida GB-1 5868375 YP_001666877.1 CDS PputGB1_0630 NC_010322.1 717325 717735 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN0668 transcription regulator heavy metal-dependent MerE family; MerR family transcriptional regulator complement(717325..717735) Pseudomonas putida GB-1 5868376 YP_001666878.1 CDS PputGB1_0631 NC_010322.1 717732 720134 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN0669 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase complement(717732..720134) Pseudomonas putida GB-1 5868377 YP_001666879.1 CDS PputGB1_0632 NC_010322.1 720187 720573 R KEGG: pen:PSEEN0670 hypothetical protein; hypothetical protein complement(720187..720573) Pseudomonas putida GB-1 5868378 YP_001666880.1 CDS PputGB1_0633 NC_010322.1 720717 720914 D PFAM: Heavy metal transport/detoxification protein; KEGG: pen:PSEEN0671 copper-binding protein; heavy metal transport/detoxification protein 720717..720914 Pseudomonas putida GB-1 5868379 YP_001666881.1 CDS PputGB1_0634 NC_010322.1 721023 722204 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 721023..722204 Pseudomonas putida GB-1 5868380 YP_001666882.1 CDS PputGB1_0635 NC_010322.1 722840 723553 D SMART: regulatory protein ArsR; KEGG: pen:PSEEN0673 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 722840..723553 Pseudomonas putida GB-1 5868381 YP_001666883.1 CDS PputGB1_0636 NC_010322.1 723574 724521 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(723574..724521) Pseudomonas putida GB-1 5868382 YP_001666884.1 CDS PputGB1_0637 NC_010322.1 724608 725294 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN0676 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(724608..725294) Pseudomonas putida GB-1 5868383 YP_001666885.1 CDS PputGB1_0638 NC_010322.1 725665 726249 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: pen:PSEEN0678 hypothetical protein; hypothetical protein complement(725665..726249) Pseudomonas putida GB-1 5868384 YP_001666886.1 CDS PputGB1_0639 NC_010322.1 726259 726921 R PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN0679 transcriptional regulator, TetR/AcrR family; TetR family transcriptional regulator complement(726259..726921) Pseudomonas putida GB-1 5868385 YP_001666887.1 CDS PputGB1_0640 NC_010322.1 727012 727929 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0680 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(727012..727929) Pseudomonas putida GB-1 5868386 YP_001666888.1 CDS PputGB1_0641 NC_010322.1 728048 729394 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 728048..729394 Pseudomonas putida GB-1 5868387 YP_001666889.1 CDS PputGB1_0642 NC_010322.1 729468 730961 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0682 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 729468..730961 Pseudomonas putida GB-1 5868388 YP_001666890.1 CDS PputGB1_0643 NC_010322.1 736880 737539 D PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4698 paraquat-inducible protein A; paraquat-inducible protein A 736880..737539 Pseudomonas putida GB-1 5868394 YP_001666891.1 CDS PputGB1_0644 NC_010322.1 737526 738149 D PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4697 paraquat-inducible protein A; paraquat-inducible protein A 737526..738149 Pseudomonas putida GB-1 5868395 YP_001666892.1 CDS PputGB1_0645 NC_010322.1 738133 740442 D PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN4696 paraquat-inducible protein B; hypothetical protein 738133..740442 Pseudomonas putida GB-1 5868396 YP_001666893.1 CDS rpsT NC_010322.1 740596 740874 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(740596..740874) Pseudomonas putida GB-1 5868397 YP_001666894.1 CDS PputGB1_0647 NC_010322.1 741125 742663 D TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pen:PSEEN4694 virulence factor MviN family; integral membrane protein MviN 741125..742663 Pseudomonas putida GB-1 5868398 YP_001666895.1 CDS PputGB1_0648 NC_010322.1 742764 743732 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 742764..743732 Pseudomonas putida GB-1 5868399 YP_001666896.1 CDS ileS NC_010322.1 743729 746560 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 743729..746560 Pseudomonas putida GB-1 5868400 YP_001666897.1 CDS lspA NC_010322.1 746553 747068 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 746553..747068 Pseudomonas putida GB-1 5868401 YP_001666898.1 CDS PputGB1_0651 NC_010322.1 747061 747498 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN4690 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 747061..747498 Pseudomonas putida GB-1 5868402 YP_001666899.1 CDS ispH NC_010322.1 747513 748460 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 747513..748460 Pseudomonas putida GB-1 5868403 YP_001666900.1 CDS PputGB1_0653 NC_010322.1 748461 748946 R KEGG: pen:PSEEN4688 type IV pili biogenesis protein FimT; type IV pili biogenesis protein FimT complement(748461..748946) Pseudomonas putida GB-1 5868404 YP_001666901.1 CDS PputGB1_0654 NC_010322.1 749077 749238 D KEGG: pen:PSEEN4687 hypothetical protein; hypothetical protein 749077..749238 Pseudomonas putida GB-1 5868405 YP_001666902.1 CDS PputGB1_0655 NC_010322.1 749235 749876 D KEGG: pen:PSEEN4686 hypothetical protein; hypothetical protein 749235..749876 Pseudomonas putida GB-1 5868406 YP_001666903.1 CDS PputGB1_0656 NC_010322.1 749873 750316 D KEGG: pen:PSEEN4685 hypothetical protein; hypothetical protein 749873..750316 Pseudomonas putida GB-1 5868407 YP_001666904.1 CDS PputGB1_0657 NC_010322.1 750318 750707 D KEGG: pen:PSEEN4684 type IV pili biogenesis protein PilE; type IV pili biogenesis protein PilE 750318..750707 Pseudomonas putida GB-1 5868408 YP_001666905.1 CDS PputGB1_0658 NC_010322.1 750762 751859 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4683 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 750762..751859 Pseudomonas putida GB-1 5868409 YP_001666906.1 CDS PputGB1_0659 NC_010322.1 751973 753382 R PFAM: Amidase; KEGG: pfl:PFL_3680 hypothetical protein; putative amidase complement(751973..753382) Pseudomonas putida GB-1 5868410 YP_001666907.1 CDS PputGB1_0660 NC_010322.1 753384 754661 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(753384..754661) Pseudomonas putida GB-1 5868411 YP_001666908.1 CDS PputGB1_0661 NC_010322.1 754675 755370 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3678 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(754675..755370) Pseudomonas putida GB-1 5868412 YP_001666909.1 CDS PputGB1_0662 NC_010322.1 755370 756125 R PFAM: ABC transporter related; KEGG: pfl:PFL_3677 branched-chain amino acid ABC transporter, ATP binding protein; ABC transporter-like protein complement(755370..756125) Pseudomonas putida GB-1 5868413 YP_001666910.1 CDS PputGB1_0663 NC_010322.1 756122 757141 R PFAM: inner-membrane translocator; KEGG: pfl:PFL_3676 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(756122..757141) Pseudomonas putida GB-1 5868414 YP_001666911.1 CDS PputGB1_0664 NC_010322.1 757143 758003 R PFAM: inner-membrane translocator; KEGG: pfl:PFL_3675 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(757143..758003) Pseudomonas putida GB-1 5868415 YP_001666912.1 CDS PputGB1_0665 NC_010322.1 758069 759271 R KEGG: pfl:PFL_3674 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; branched chain amino acid ABC transporter substrate-binding protein complement(758069..759271) Pseudomonas putida GB-1 5868416 YP_001666913.1 CDS PputGB1_0666 NC_010322.1 759362 760141 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3673 transcriptional regulator, GntR family; regulatory protein GntR HTH complement(759362..760141) Pseudomonas putida GB-1 5868417 YP_001666914.1 CDS PputGB1_0667 NC_010322.1 760311 760541 R KEGG: pen:PSEEN4682 hypothetical protein; hypothetical protein complement(760311..760541) Pseudomonas putida GB-1 5868418 YP_001666915.1 CDS PputGB1_0668 NC_010322.1 760636 761655 R KEGG: pen:PSEEN4681 competence lipoprotein ComL; competence lipoprotein ComL complement(760636..761655) Pseudomonas putida GB-1 5868419 YP_001666916.1 CDS PputGB1_0669 NC_010322.1 761707 762765 D KEGG: pen:PSEEN4680 23S rRNA pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 761707..762765 Pseudomonas putida GB-1 5868420 YP_001666917.1 CDS PputGB1_0670 NC_010322.1 762762 763502 D PFAM: protein of unknown function DUF152; KEGG: pen:PSEEN4679 hypothetical protein; hypothetical protein 762762..763502 Pseudomonas putida GB-1 5868421 YP_001666918.1 CDS PputGB1_0671 NC_010322.1 763642 766206 D KEGG: pen:PSEEN4678 ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 763642..766206 Pseudomonas putida GB-1 5868422 YP_001666919.1 CDS PputGB1_0672 NC_010322.1 767163 768458 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN4675 NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(767163..768458) Pseudomonas putida GB-1 5868428 YP_001666920.1 CDS PputGB1_0673 NC_010322.1 768543 768716 R KEGG: pen:PSEEN4674 hypothetical protein; hypothetical protein complement(768543..768716) Pseudomonas putida GB-1 5868429 YP_001666921.1 CDS PputGB1_0674 NC_010322.1 768849 769478 R PFAM: Protein of unknown function DUF1780; KEGG: pen:PSEEN4673 hypothetical protein; hypothetical protein complement(768849..769478) Pseudomonas putida GB-1 5868430 YP_001666922.1 CDS PputGB1_0675 NC_010322.1 769576 770259 D KEGG: pen:PSEEN4671 hypothetical protein; hypothetical protein 769576..770259 Pseudomonas putida GB-1 5868431 YP_001666923.1 CDS PputGB1_0676 NC_010322.1 770471 770671 R PFAM: protein of unknown function DUF329; KEGG: pen:PSEEN4670 hypothetical protein; zinc-binding protein complement(770471..770671) Pseudomonas putida GB-1 5868432 YP_001666924.1 CDS coaE NC_010322.1 770668 771291 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(770668..771291) Pseudomonas putida GB-1 5868433 YP_001666925.1 CDS PputGB1_0678 NC_010322.1 771291 772157 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: pen:PSEEN4668 type IV pili prepilin peptidase PilD/XcpA; prepilin peptidase complement(771291..772157) Pseudomonas putida GB-1 5868434 YP_001666926.1 CDS PputGB1_0680 NC_010322.1 773584 773994 D PFAM: Fimbrial protein pilin; KEGG: pen:PSEEN4666 type IV pili prepilin PilA; fimbrial protein pilin 773584..773994 Pseudomonas putida GB-1 5868436 YP_001666927.1 CDS PputGB1_0681 NC_010322.1 774308 775513 D PFAM: integrase family protein; KEGG: psa:PST_0259 site-specific recombinase, phage integrase family; integrase family protein 774308..775513 Pseudomonas putida GB-1 5868438 YP_001666928.1 CDS PputGB1_0682 NC_010322.1 775506 776255 D hypothetical protein 775506..776255 Pseudomonas putida GB-1 5868439 YP_001666929.1 CDS PputGB1_0683 NC_010322.1 776374 776583 D PFAM: Prophage CP4-57 regulatory; KEGG: sbo:SBO_4169 hypothetical protein; phage transcriptional regulator AlpA 776374..776583 Pseudomonas putida GB-1 5868440 YP_001666930.1 CDS PputGB1_0684 NC_010322.1 776862 777506 D KEGG: tbd:Tbd_0930 hypothetical protein; hypothetical protein 776862..777506 Pseudomonas putida GB-1 5868441 YP_001666931.1 CDS PputGB1_0685 NC_010322.1 777832 778269 R hypothetical protein complement(777832..778269) Pseudomonas putida GB-1 5868442 YP_001666932.1 CDS PputGB1_0686 NC_010322.1 778305 779192 R KEGG: sbl:Sbal_4432 phage integrase family protein; phage integrase family protein complement(778305..779192) Pseudomonas putida GB-1 5868443 YP_001666933.1 CDS PputGB1_0687 NC_010322.1 780340 782280 D KEGG: fal:FRAAL5314 putative transmembrane efflux protein; hypothetical protein 780340..782280 Pseudomonas putida GB-1 5868444 YP_001666934.1 CDS PputGB1_0688 NC_010322.1 783153 783689 D hypothetical protein 783153..783689 Pseudomonas putida GB-1 5868445 YP_001666935.1 CDS PputGB1_0689 NC_010322.1 783809 784414 R hypothetical protein complement(783809..784414) Pseudomonas putida GB-1 5868446 YP_001666936.1 CDS PputGB1_0690 NC_010322.1 785005 785511 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2529 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 785005..785511 Pseudomonas putida GB-1 5868447 YP_001666937.1 CDS PputGB1_0691 NC_010322.1 785508 786506 D PFAM: FecR protein; KEGG: pfl:PFL_2528 sigma factor regulatory protein PupR; anti-FecI sigma factor FecR 785508..786506 Pseudomonas putida GB-1 5868448 YP_001666938.1 CDS PputGB1_0692 NC_010322.1 786589 788994 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2527 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 786589..788994 Pseudomonas putida GB-1 5868449 YP_001666939.1 CDS PputGB1_0693 NC_010322.1 789205 791649 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2391 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor complement(789205..791649) Pseudomonas putida GB-1 5868450 YP_001666940.1 CDS PputGB1_0694 NC_010322.1 791778 792734 R PFAM: FecR protein; KEGG: pfl:PFL_0146 sigma factor regulatory protein, FecR/PupR family; anti-FecI sigma factor FecR complement(791778..792734) Pseudomonas putida GB-1 5868451 YP_001666941.1 CDS PputGB1_0695 NC_010322.1 792731 793237 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_0145 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(792731..793237) Pseudomonas putida GB-1 5868452 YP_001666942.1 CDS PputGB1_0696 NC_010322.1 793379 794764 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pfo:Pfl_2796 gluconate transporter; gluconate transporter complement(793379..794764) Pseudomonas putida GB-1 5868453 YP_001666943.1 CDS PputGB1_0697 NC_010322.1 795099 796028 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 795099..796028 Pseudomonas putida GB-1 5868454 YP_001666944.1 CDS PputGB1_0698 NC_010322.1 796120 796275 D hypothetical protein 796120..796275 Pseudomonas putida GB-1 5868455 YP_001666945.1 CDS PputGB1_0699 NC_010322.1 796315 796812 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_1832 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 796315..796812 Pseudomonas putida GB-1 5868456 YP_001666946.1 CDS PputGB1_0700 NC_010322.1 796818 797747 D PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 796818..797747 Pseudomonas putida GB-1 5868457 YP_001666947.1 CDS PputGB1_0701 NC_010322.1 797879 800215 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA; TonB-dependent siderophore receptor 797879..800215 Pseudomonas putida GB-1 5868458 YP_001666948.1 CDS PputGB1_0702 NC_010322.1 800267 801220 R PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN4637 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter complement(800267..801220) Pseudomonas putida GB-1 5868459 YP_001666949.1 CDS glyA NC_010322.1 801465 802718 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(801465..802718) Pseudomonas putida GB-1 5868460 YP_001666950.1 CDS PputGB1_0704 NC_010322.1 802912 806742 R KEGG: pen:PSEEN0807 sensory box protein(GGDEF domain/EAL domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(802912..806742) Pseudomonas putida GB-1 5868461 YP_001666951.1 CDS PputGB1_0705 NC_010322.1 806991 807404 D KEGG: pen:PSEEN0809 hypothetical protein; hypothetical protein 806991..807404 Pseudomonas putida GB-1 5868462 YP_001666952.1 CDS PputGB1_0706 NC_010322.1 807705 809372 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 807705..809372 Pseudomonas putida GB-1 5868463 YP_001666953.1 CDS PputGB1_0707 NC_010322.1 809594 810934 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 809594..810934 Pseudomonas putida GB-1 5868464 YP_001666954.1 CDS PputGB1_0708 NC_010322.1 811123 811620 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pen:PSEEN0813 transcription elongation factor; GreA/GreB family elongation factor complement(811123..811620) Pseudomonas putida GB-1 5868465 YP_001666955.1 CDS PputGB1_0709 NC_010322.1 811688 812044 R KEGG: pen:PSEEN0814 lipoprotein; lipoprotein complement(811688..812044) Pseudomonas putida GB-1 5868466 YP_001666956.1 CDS PputGB1_0710 NC_010322.1 812300 814153 R KEGG: pen:PSEEN0815 hypothetical protein; hypothetical protein complement(812300..814153) Pseudomonas putida GB-1 5868467 YP_001666957.1 CDS PputGB1_0711 NC_010322.1 814225 814713 R KEGG: pen:PSEEN0816 hypothetical protein; hypothetical protein complement(814225..814713) Pseudomonas putida GB-1 5868468 YP_001666958.1 CDS PputGB1_0712 NC_010322.1 814975 817413 D PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN0817 ATP-dependent protease; peptidase S16 lon domain-containing protein 814975..817413 Pseudomonas putida GB-1 5868469 YP_001666959.1 CDS PputGB1_0713 NC_010322.1 817574 817912 D KEGG: pen:PSEEN0818 hypothetical protein; hypothetical protein 817574..817912 Pseudomonas putida GB-1 5868470 YP_001666960.1 CDS PputGB1_0714 NC_010322.1 818022 818510 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0819 hypothetical protein; hypothetical protein 818022..818510 Pseudomonas putida GB-1 5868471 YP_001666961.1 CDS PputGB1_0715 NC_010322.1 818639 818944 D KEGG: pen:PSEEN0820 hypothetical protein; hypothetical protein 818639..818944 Pseudomonas putida GB-1 5868472 YP_001666962.1 CDS PputGB1_0716 NC_010322.1 819030 819647 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0821 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 819030..819647 Pseudomonas putida GB-1 5868473 YP_001666963.1 CDS PputGB1_0717 NC_010322.1 819776 820021 R KEGG: pen:PSEEN0822 hypothetical protein; hypothetical protein complement(819776..820021) Pseudomonas putida GB-1 5868474 YP_001666964.1 CDS PputGB1_0718 NC_010322.1 820106 820444 R TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pen:PSEEN0823 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA complement(820106..820444) Pseudomonas putida GB-1 5868475 YP_001666965.1 CDS PputGB1_0719 NC_010322.1 820612 821580 R PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0824 octaprenyl-diphosphate synthase; polyprenyl synthetase complement(820612..821580) Pseudomonas putida GB-1 5868476 YP_001666966.1 CDS rplU NC_010322.1 821825 822139 D PFAM: ribosomal protein L21; KEGG: pen:PSEEN0825 50S ribosomal subunit protein L21; 50S ribosomal protein L21 821825..822139 Pseudomonas putida GB-1 5868477 YP_001666967.1 CDS rpmA NC_010322.1 822178 822435 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 822178..822435 Pseudomonas putida GB-1 5868478 YP_001666968.1 CDS obgE NC_010322.1 822624 823850 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 822624..823850 Pseudomonas putida GB-1 5868479 YP_001666969.1 CDS PputGB1_0723 NC_010322.1 823936 825054 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 823936..825054 Pseudomonas putida GB-1 5868480 YP_001666970.1 CDS PputGB1_0724 NC_010322.1 825051 825512 D PFAM: CreA family protein; KEGG: pfo:Pfl_4856 CreA; CreA family protein 825051..825512 Pseudomonas putida GB-1 5868481 YP_001666971.1 CDS PputGB1_0725 NC_010322.1 825617 828448 R KEGG: pen:PSEEN0831 hypothetical protein; hypothetical protein complement(825617..828448) Pseudomonas putida GB-1 5868482 YP_001666972.1 CDS PputGB1_0726 NC_010322.1 828445 829152 R KEGG: pen:PSEEN0832 hypothetical protein; hypothetical protein complement(828445..829152) Pseudomonas putida GB-1 5868483 YP_001666973.1 CDS PputGB1_0727 NC_010322.1 829142 830431 R KEGG: pen:PSEEN0833 hypothetical protein; hypothetical protein complement(829142..830431) Pseudomonas putida GB-1 5868484 YP_001666974.1 CDS PputGB1_0728 NC_010322.1 830633 831454 D KEGG: pen:PSEEN0834 hypothetical protein; hypothetical protein 830633..831454 Pseudomonas putida GB-1 5868485 YP_001666975.1 CDS PputGB1_0729 NC_010322.1 831451 831906 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0835 ribosomal-protein-alanine acetyltransferase RimI; ribosomal-protein-alanine acetyltransferase 831451..831906 Pseudomonas putida GB-1 5868486 YP_001666976.1 CDS PputGB1_0730 NC_010322.1 831972 832547 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: acb:A1S_1248 hypothetical protein; hypothetical protein 831972..832547 Pseudomonas putida GB-1 5868487 YP_001666977.1 CDS PputGB1_0731 NC_010322.1 832487 833404 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0838 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(832487..833404) Pseudomonas putida GB-1 5868488 YP_001666978.1 CDS PputGB1_0732 NC_010322.1 833570 834184 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0839 transporter, LysE family; lysine exporter protein LysE/YggA 833570..834184 Pseudomonas putida GB-1 5868489 YP_001666979.1 CDS PputGB1_0733 NC_010322.1 834292 834576 D hypothetical protein 834292..834576 Pseudomonas putida GB-1 5868490 YP_001666980.1 CDS PputGB1_0734 NC_010322.1 834838 835770 R PFAM: FecR protein; KEGG: pen:PSEEN0840 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(834838..835770) Pseudomonas putida GB-1 5868492 YP_001666981.1 CDS PputGB1_0735 NC_010322.1 835955 837169 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0841 fosmidomycin/multidrug transport protein (MFS superfamily); major facilitator superfamily transporter 835955..837169 Pseudomonas putida GB-1 5868493 YP_001666982.1 CDS PputGB1_0736 NC_010322.1 837492 838649 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0842 major facilitator family transporter; major facilitator superfamily transporter 837492..838649 Pseudomonas putida GB-1 5868494 YP_001666983.1 CDS PputGB1_0737 NC_010322.1 838656 839612 R PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor; anti-FecI sigma factor FecR complement(838656..839612) Pseudomonas putida GB-1 5868495 YP_001666984.1 CDS PputGB1_0738 NC_010322.1 839599 840114 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(839599..840114) Pseudomonas putida GB-1 5868496 YP_001666985.1 CDS PputGB1_0739 NC_010322.1 840286 840912 D PFAM: HhH-GPD family protein; KEGG: pen:PSEEN0843 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II 840286..840912 Pseudomonas putida GB-1 5868497 YP_001666986.1 CDS PputGB1_0740 NC_010322.1 840983 842035 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN0845 O6-methylguanine-DNA methyltransferase; AraC family transcriptional regulator 840983..842035 Pseudomonas putida GB-1 5868498 YP_001666987.1 CDS PputGB1_0741 NC_010322.1 842092 844503 D PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN0846 ion mechanosensitive channel; mechanosensitive ion channel protein MscS 842092..844503 Pseudomonas putida GB-1 5868499 YP_001666988.1 CDS PputGB1_0742 NC_010322.1 844610 846040 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0848 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase complement(844610..846040) Pseudomonas putida GB-1 5868500 YP_001666989.1 CDS PputGB1_0743 NC_010322.1 846054 847553 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN0849 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease complement(846054..847553) Pseudomonas putida GB-1 5868501 YP_001666990.1 CDS PputGB1_0744 NC_010322.1 847645 848034 R KEGG: pen:PSEEN0850 hypothetical protein; hypothetical protein complement(847645..848034) Pseudomonas putida GB-1 5868502 YP_001666991.1 CDS PputGB1_0745 NC_010322.1 848235 848738 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_5893 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 848235..848738 Pseudomonas putida GB-1 5868503 YP_001666992.1 CDS PputGB1_0746 NC_010322.1 848735 849679 D PFAM: FecR protein; KEGG: dac:Daci_3275 anti-FecI sigma factor, FecR; anti-FecI sigma factor FecR 848735..849679 Pseudomonas putida GB-1 5868504 YP_001666993.1 CDS PputGB1_0747 NC_010322.1 849819 852239 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: rso:RSc2920 putative hydroxamate-type ferrisiderophore receptor signal peptide protein; TonB-dependent siderophore receptor 849819..852239 Pseudomonas putida GB-1 5868505 YP_001666994.1 CDS PputGB1_0748 NC_010322.1 852349 853368 D PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN2685 cation transporter, CorA family; Mg2 transporter protein CorA family protein 852349..853368 Pseudomonas putida GB-1 5868506 YP_001666995.1 CDS PputGB1_0749 NC_010322.1 853471 854091 D PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN0851 hydrolase; isochorismatase hydrolase family; isochorismatase hydrolase 853471..854091 Pseudomonas putida GB-1 5868507 YP_001666996.1 CDS PputGB1_0750 NC_010322.1 854200 855018 D PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN2681 hypothetical protein; hypothetical protein 854200..855018 Pseudomonas putida GB-1 5868508 YP_001666997.1 CDS PputGB1_0751 NC_010322.1 855055 856251 D TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; KEGG: pfo:Pfl_3513 potassium efflux system protein; potassium efflux system protein 855055..856251 Pseudomonas putida GB-1 5868509 YP_001666998.1 CDS PputGB1_0752 NC_010322.1 856292 857389 D PFAM: protein of unknown function UPF0118; KEGG: reh:H16_A2418 predicted permease; hypothetical protein 856292..857389 Pseudomonas putida GB-1 5868510 YP_001666999.1 CDS PputGB1_0753 NC_010322.1 857393 858907 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2417 outer membrane heavy metal efflux protein; RND efflux system outer membrane lipoprotein 857393..858907 Pseudomonas putida GB-1 5868511 YP_001667000.1 CDS PputGB1_0754 NC_010322.1 858904 860001 D PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD; secretion protein HlyD family protein 858904..860001 Pseudomonas putida GB-1 5868512 YP_001667001.1 CDS PputGB1_0755 NC_010322.1 859991 861007 D KEGG: reh:H16_A2415 predicted membrane protein; hypothetical protein 859991..861007 Pseudomonas putida GB-1 5868513 YP_001667002.1 CDS PputGB1_0756 NC_010322.1 861016 862728 R TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: reu:Reut_A0690 sulphate anion transporter; sulfate transporter complement(861016..862728) Pseudomonas putida GB-1 5868514 YP_001667003.1 CDS PputGB1_0757 NC_010322.1 862847 863353 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 862847..863353 Pseudomonas putida GB-1 5868515 YP_001667004.1 CDS PputGB1_0758 NC_010322.1 863350 864297 D PFAM: FecR protein; KEGG: mms:mma_2029 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 863350..864297 Pseudomonas putida GB-1 5868516 YP_001667005.1 CDS PputGB1_0759 NC_010322.1 864397 866799 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1927 Ton-B dependent siderophore receptor, putative; TonB-dependent siderophore receptor 864397..866799 Pseudomonas putida GB-1 5868517 YP_001667006.1 CDS PputGB1_0760 NC_010322.1 866959 869067 D KEGG: psa:PST_3446 hypothetical protein; hypothetical protein 866959..869067 Pseudomonas putida GB-1 5868518 YP_001667007.1 CDS PputGB1_0761 NC_010322.1 869042 870979 D KEGG: psa:PST_3445 hypothetical protein; hypothetical protein 869042..870979 Pseudomonas putida GB-1 5868519 YP_001667008.1 CDS PputGB1_0762 NC_010322.1 870976 872364 D KEGG: yli:YALI0F03366g hypothetical protein; hypothetical protein 870976..872364 Pseudomonas putida GB-1 5868520 YP_001667009.1 CDS PputGB1_0763 NC_010322.1 872509 873609 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(872509..873609) Pseudomonas putida GB-1 5868521 YP_001667010.1 CDS PputGB1_0764 NC_010322.1 873634 874218 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(873634..874218) Pseudomonas putida GB-1 5868522 YP_001667011.1 CDS PputGB1_0765 NC_010322.1 874298 874891 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(874298..874891) Pseudomonas putida GB-1 5868523 YP_001667012.1 CDS PputGB1_0766 NC_010322.1 875012 875944 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(875012..875944) Pseudomonas putida GB-1 5868524 YP_001667013.1 CDS ipk NC_010322.1 876097 876957 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(876097..876957) Pseudomonas putida GB-1 5868526 YP_001667014.1 CDS lolB NC_010322.1 876962 877579 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(876962..877579) Pseudomonas putida GB-1 5868527 YP_001667015.1 CDS PputGB1_0769 NC_010322.1 877584 879305 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0860 hypothetical protein; hypothetical protein complement(877584..879305) Pseudomonas putida GB-1 5868528 YP_001667016.1 CDS PputGB1_0770 NC_010322.1 879515 879895 R hypothetical protein complement(879515..879895) Pseudomonas putida GB-1 5868529 YP_001667017.1 CDS PputGB1_0771 NC_010322.1 879892 880866 R KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein complement(879892..880866) Pseudomonas putida GB-1 5868530 YP_001667018.1 CDS PputGB1_0772 NC_010322.1 880877 881365 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector complement(880877..881365) Pseudomonas putida GB-1 5868531 YP_001667019.1 CDS hemA NC_010322.1 881833 883110 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 881833..883110 Pseudomonas putida GB-1 5868532 YP_001667020.1 CDS prfA NC_010322.1 883107 884189 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 883107..884189 Pseudomonas putida GB-1 5868533 YP_001667021.1 CDS PputGB1_0775 NC_010322.1 884189 885019 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0877 methylase of polypeptide chain release factors; protein-(glutamine-N5) methyltransferase 884189..885019 Pseudomonas putida GB-1 5868534 YP_001667022.1 CDS PputGB1_0776 NC_010322.1 885013 885768 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 885013..885768 Pseudomonas putida GB-1 5868535 YP_001667023.1 CDS PputGB1_0777 NC_010322.1 885761 886558 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 885761..886558 Pseudomonas putida GB-1 5868536 YP_001667024.1 CDS PputGB1_0778 NC_010322.1 886654 887181 D KEGG: pfl:PFL_5155 hypothetical protein; hypothetical protein 886654..887181 Pseudomonas putida GB-1 5868537 YP_001667025.1 CDS PputGB1_0779 NC_010322.1 887238 887936 R KEGG: pen:PSEEN0880 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase complement(887238..887936) Pseudomonas putida GB-1 5868538 YP_001667026.1 CDS PputGB1_0780 NC_010322.1 887948 889375 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: pen:PSEEN0881 deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding; deoxyribodipyrimidine photo-lyase complement(887948..889375) Pseudomonas putida GB-1 5868539 YP_001667027.1 CDS PputGB1_0781 NC_010322.1 889366 890265 R PFAM: regulatory protein MerR; KEGG: pen:PSEEN0882 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(889366..890265) Pseudomonas putida GB-1 5868540 YP_001667028.1 CDS PputGB1_0782 NC_010322.1 890255 891223 R PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: pen:PSEEN0883 hypothetical protein; hypothetical protein complement(890255..891223) Pseudomonas putida GB-1 5868541 YP_001667029.1 CDS PputGB1_0783 NC_010322.1 891324 892310 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN0884 hypothetical protein; FAD dependent oxidoreductase complement(891324..892310) Pseudomonas putida GB-1 5868542 YP_001667030.1 CDS PputGB1_0784 NC_010322.1 892497 893402 D PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: pen:PSEEN0885 hypothetical protein; NAD-dependent epimerase/dehydratase 892497..893402 Pseudomonas putida GB-1 5868543 YP_001667031.1 CDS hemH NC_010322.1 893416 894429 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 893416..894429 Pseudomonas putida GB-1 5868544 YP_001667032.1 CDS PputGB1_0786 NC_010322.1 894548 895822 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0887 uracil permease; uracil-xanthine permease complement(894548..895822) Pseudomonas putida GB-1 5868545 YP_001667033.1 CDS upp NC_010322.1 895825 896463 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(895825..896463) Pseudomonas putida GB-1 5868546 YP_001667034.1 CDS PputGB1_0788 NC_010322.1 896626 897183 D Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 896626..897183 Pseudomonas putida GB-1 5868547 YP_001667035.1 CDS PputGB1_0789 NC_010322.1 897186 897659 D KEGG: pen:PSEEN0890 hypothetical protein; hypothetical protein 897186..897659 Pseudomonas putida GB-1 5868548 YP_001667036.1 CDS PputGB1_0790 NC_010322.1 897711 898181 D KEGG: pen:PSEEN0891 hypothetical protein; hypothetical protein 897711..898181 Pseudomonas putida GB-1 5868549 YP_001667037.1 CDS PputGB1_0791 NC_010322.1 898250 898540 D KEGG: pen:PSEEN0892 hypothetical protein; hypothetical protein 898250..898540 Pseudomonas putida GB-1 5868550 YP_001667038.1 CDS PputGB1_0792 NC_010322.1 898597 900105 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(898597..900105) Pseudomonas putida GB-1 5868551 YP_001667039.1 CDS PputGB1_0793 NC_010322.1 900706 900939 R KEGG: pen:PSEEN0894 hypothetical protein; hypothetical protein complement(900706..900939) Pseudomonas putida GB-1 5868552 YP_001667040.1 CDS PputGB1_0794 NC_010322.1 901085 901669 D KEGG: pen:PSEEN0895 lipoprotein; lipoprotein 901085..901669 Pseudomonas putida GB-1 5868553 YP_001667041.1 CDS PputGB1_0795 NC_010322.1 901727 901933 R KEGG: pen:PSEEN0896 hypothetical protein; hypothetical protein complement(901727..901933) Pseudomonas putida GB-1 5868554 YP_001667042.1 CDS PputGB1_0796 NC_010322.1 902093 902353 D KEGG: pen:PSEEN0897 hypothetical protein; hypothetical protein 902093..902353 Pseudomonas putida GB-1 5868555 YP_001667043.1 CDS PputGB1_0797 NC_010322.1 902474 903640 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0898 hypothetical protein; phospholipid/glycerol acyltransferase complement(902474..903640) Pseudomonas putida GB-1 5868556 YP_001667044.1 CDS PputGB1_0798 NC_010322.1 903765 903947 D KEGG: pen:PSEEN0900 hypothetical protein; hypothetical protein 903765..903947 Pseudomonas putida GB-1 5868557 YP_001667045.1 CDS PputGB1_0799 NC_010322.1 903947 904207 D KEGG: pen:PSEEN0901 hypothetical protein; hypothetical protein 903947..904207 Pseudomonas putida GB-1 5868558 YP_001667046.1 CDS PputGB1_0800 NC_010322.1 904223 904843 D PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN0902 hypothetical protein; hypothetical protein 904223..904843 Pseudomonas putida GB-1 5868559 YP_001667047.1 CDS PputGB1_0801 NC_010322.1 904920 905738 D PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN0904 zinc-dependent peptidase, M48 family; peptidase M48 Ste24p 904920..905738 Pseudomonas putida GB-1 5868560 YP_001667048.1 CDS PputGB1_0802 NC_010322.1 905781 906365 R PFAM: protein of unknown function UPF0016; KEGG: pen:PSEEN0905 hypothetical protein; hypothetical protein complement(905781..906365) Pseudomonas putida GB-1 5868561 YP_001667049.1 CDS PputGB1_0803 NC_010322.1 906633 907631 R PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pen:PSEEN0906 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase complement(906633..907631) Pseudomonas putida GB-1 5868562 YP_001667050.1 CDS PputGB1_0804 NC_010322.1 907686 908651 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(907686..908651) Pseudomonas putida GB-1 5868563 YP_001667051.1 CDS PputGB1_0805 NC_010322.1 908813 910495 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 908813..910495 Pseudomonas putida GB-1 5868564 YP_001667052.1 CDS PputGB1_0806 NC_010322.1 910827 912713 D PFAM: protein of unknown function DUF1302; KEGG: pen:PSEEN0909 hypothetical protein; hypothetical protein 910827..912713 Pseudomonas putida GB-1 5868565 YP_001667053.1 CDS PputGB1_0807 NC_010322.1 912739 914103 D PFAM: protein of unknown function DUF1329; KEGG: pen:PSEEN0910 hypothetical protein; hypothetical protein 912739..914103 Pseudomonas putida GB-1 5868566 YP_001667054.1 CDS PputGB1_0808 NC_010322.1 914396 917113 D PFAM: regulatory protein LuxR; KEGG: pen:PSEEN0911 transcriptional regulator, LuxR family; ATP-dependent transcription regulator LuxR 914396..917113 Pseudomonas putida GB-1 5868567 YP_001667055.1 CDS PputGB1_0809 NC_010322.1 917273 918880 D PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0912 response regulator/TPR domain protein; response regulator receiver protein 917273..918880 Pseudomonas putida GB-1 5868568 YP_001667056.1 CDS PputGB1_0810 NC_010322.1 918877 919569 D PFAM: ATP-binding region ATPase domain protein; KEGG: pen:PSEEN0913 sensor histidine kinase; histidine kinase 918877..919569 Pseudomonas putida GB-1 5868569 YP_001667057.1 CDS PputGB1_0811 NC_010322.1 919868 920512 D PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0914 hydrolase; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 919868..920512 Pseudomonas putida GB-1 5868570 YP_001667058.1 CDS PputGB1_0812 NC_010322.1 920622 921344 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0915 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 920622..921344 Pseudomonas putida GB-1 5868571 YP_001667059.1 CDS PputGB1_0813 NC_010322.1 921382 923469 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(921382..923469) Pseudomonas putida GB-1 5868572 YP_001667060.1 CDS PputGB1_0814 NC_010322.1 923501 923788 R KEGG: pfl:PFL_0939 hypothetical protein; hypothetical protein complement(923501..923788) Pseudomonas putida GB-1 5868573 YP_001667061.1 CDS PputGB1_0815 NC_010322.1 923802 924287 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0918 peptidyl-prolyl cis-trans isomerase SlyD (FKBP-type); FKBP-type peptidylprolyl isomerase 923802..924287 Pseudomonas putida GB-1 5868574 YP_001667062.1 CDS PputGB1_0816 NC_010322.1 924433 924915 D PFAM: glutathione peroxidase; KEGG: pen:PSEEN0919 glutathione peroxidase; glutathione peroxidase 924433..924915 Pseudomonas putida GB-1 5868575 YP_001667063.1 CDS PputGB1_0817 NC_010322.1 925043 926233 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN0921 glycosyl transferase, group 1; glycosyl transferase group 1 protein complement(925043..926233) Pseudomonas putida GB-1 5868576 YP_001667064.1 CDS PputGB1_0818 NC_010322.1 926412 927728 D KEGG: pen:PSEEN0922 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 926412..927728 Pseudomonas putida GB-1 5868577 YP_001667065.1 CDS PputGB1_0819 NC_010322.1 927765 928493 R putative role in sulfur assimilation; putative sulfate transport protein CysZ complement(927765..928493) Pseudomonas putida GB-1 5868578 YP_001667066.1 CDS PputGB1_0820 NC_010322.1 928816 929778 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0924 thioredoxin reductase; thioredoxin reductase 928816..929778 Pseudomonas putida GB-1 5868579 YP_001667067.1 CDS PputGB1_0821 NC_010322.1 929837 930685 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(929837..930685) Pseudomonas putida GB-1 5868580 YP_001667068.1 CDS PputGB1_0822 NC_010322.1 930928 933087 D PFAM: protein of unknown function DUF1631; KEGG: pen:PSEEN0926 hypothetical protein; hypothetical protein 930928..933087 Pseudomonas putida GB-1 5868581 YP_001667069.1 CDS PputGB1_0823 NC_010322.1 933175 933747 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0927 N-acetyl-anhydromuramyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 933175..933747 Pseudomonas putida GB-1 5868582 YP_001667070.1 CDS PputGB1_0824 NC_010322.1 933744 934574 D KEGG: pen:PSEEN0928 inner membrane protein AmpE; signaling modulator of AmpD, AmpE 933744..934574 Pseudomonas putida GB-1 5868583 YP_001667071.1 CDS PputGB1_0825 NC_010322.1 934614 935390 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN0930 deoxyribonuclease, TatD family (metal-dependent); TatD family hydrolase complement(934614..935390) Pseudomonas putida GB-1 5868584 YP_001667072.1 CDS PputGB1_0826 NC_010322.1 935393 936388 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(935393..936388) Pseudomonas putida GB-1 5868585 YP_001667073.1 CDS PputGB1_0827 NC_010322.1 936673 939525 D TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN0932 phosphotransferase system FruB, fructose-specific EI/HPr/EIIA components; phosphoenolpyruvate-protein phosphotransferase 936673..939525 Pseudomonas putida GB-1 5868586 YP_001667074.1 CDS PputGB1_0828 NC_010322.1 939526 940473 D KEGG: pen:PSEEN0933 1-phosphofructokinase FruK; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 939526..940473 Pseudomonas putida GB-1 5868587 YP_001667075.1 CDS PputGB1_0829 NC_010322.1 940470 942212 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: pen:PSEEN0934 phosphotransferase system FruA, fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 940470..942212 Pseudomonas putida GB-1 5868588 YP_001667076.1 CDS PputGB1_0830 NC_010322.1 942359 942580 R KEGG: pen:PSEEN0935 hypothetical protein; hypothetical protein complement(942359..942580) Pseudomonas putida GB-1 5868589 YP_001667077.1 CDS PputGB1_0831 NC_010322.1 942783 943259 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0936 hypothetical protein; hypothetical protein 942783..943259 Pseudomonas putida GB-1 5868590 YP_001667078.1 CDS PputGB1_0832 NC_010322.1 943256 944746 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0937 hypothetical protein; diguanylate cyclase complement(943256..944746) Pseudomonas putida GB-1 5868591 YP_001667079.1 CDS PputGB1_0833 NC_010322.1 944981 946315 R PFAM: outer membrane porin; KEGG: pen:PSEEN0940 porin OprD family; outer membrane porin complement(944981..946315) Pseudomonas putida GB-1 5868592 YP_001667080.1 CDS PputGB1_0834 NC_010322.1 946521 946745 R KEGG: pen:PSEEN0941 hypothetical protein; hypothetical protein complement(946521..946745) Pseudomonas putida GB-1 5868593 YP_001667081.1 CDS PputGB1_0835 NC_010322.1 946902 948299 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0942 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase complement(946902..948299) Pseudomonas putida GB-1 5868594 YP_001667082.1 CDS PputGB1_0836 NC_010322.1 948274 948948 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN0943 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator complement(948274..948948) Pseudomonas putida GB-1 5868595 YP_001667083.1 CDS PputGB1_0837 NC_010322.1 948958 952050 R PFAM: acriflavin resistance protein; KEGG: pen:PSEEN0944 multidrug transport protein; acriflavin resistance protein family; acriflavin resistance protein complement(948958..952050) Pseudomonas putida GB-1 5868596 YP_001667084.1 CDS PputGB1_0838 NC_010322.1 952047 953210 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0945 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit complement(952047..953210) Pseudomonas putida GB-1 5868597 YP_001667085.1 CDS PputGB1_0839 NC_010322.1 953479 954213 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0947 hypothetical protein; hypothetical protein complement(953479..954213) Pseudomonas putida GB-1 5868598 YP_001667086.1 CDS PputGB1_0840 NC_010322.1 954210 954521 R KEGG: pen:PSEEN0948 hypothetical protein; hypothetical protein complement(954210..954521) Pseudomonas putida GB-1 5868599 YP_001667087.1 CDS PputGB1_0841 NC_010322.1 954610 955509 R PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN0950 chemotaxis signal transduction protein CheW-like; response regulator receiver modulated CheW protein complement(954610..955509) Pseudomonas putida GB-1 5868600 YP_001667088.1 CDS PputGB1_0842 NC_010322.1 955650 956834 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: stt:t2646 putative type I secretion protein; HlyD family type I secretion membrane fusion protein complement(955650..956834) Pseudomonas putida GB-1 5868601 YP_001667089.1 CDS PputGB1_0843 NC_010322.1 956831 958999 R KEGG: aeh:Mlg_2167 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(956831..958999) Pseudomonas putida GB-1 5868602 YP_001667090.1 CDS PputGB1_0844 NC_010322.1 958996 960432 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ses:SARI_00237 hypothetical protein; TolC family type I secretion outer membrane protein complement(958996..960432) Pseudomonas putida GB-1 5868603 YP_001667091.1 CDS PputGB1_0845 NC_010322.1 960496 976851 R KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein complement(960496..976851) Pseudomonas putida GB-1 5868604 YP_001667092.1 CDS PputGB1_0846 NC_010322.1 977043 978599 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator complement(977043..978599) Pseudomonas putida GB-1 5868605 YP_001667093.1 CDS PputGB1_0847 NC_010322.1 978754 979932 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 978754..979932 Pseudomonas putida GB-1 5868606 YP_001667094.1 CDS PputGB1_0848 NC_010322.1 980321 980827 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 980321..980827 Pseudomonas putida GB-1 5868607 YP_001667095.1 CDS PputGB1_0849 NC_010322.1 981387 982328 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: pen:PSEEN0956 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 981387..982328 Pseudomonas putida GB-1 5868608 YP_001667096.1 CDS PputGB1_0850 NC_010322.1 982332 984350 D KEGG: pen:PSEEN0957 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 982332..984350 Pseudomonas putida GB-1 5868609 YP_001667097.1 CDS PputGB1_0851 NC_010322.1 984354 984980 D TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0958 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 984354..984980 Pseudomonas putida GB-1 5868610 YP_001667098.1 CDS PputGB1_0852 NC_010322.1 984980 985312 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: pen:PSEEN0959 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 984980..985312 Pseudomonas putida GB-1 5868611 YP_001667099.1 CDS PputGB1_0853 NC_010322.1 985324 986211 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 985324..986211 Pseudomonas putida GB-1 5868612 YP_001667100.1 CDS PputGB1_0854 NC_010322.1 986478 987686 D PFAM: aminotransferase class I and II; KEGG: pen:PSEEN0965 aminotransferase (transaminase); aminotransferase 986478..987686 Pseudomonas putida GB-1 5868613 YP_001667101.1 CDS PputGB1_0855 NC_010322.1 987800 988927 D KEGG: pen:PSEEN0961 hypothetical protein; hypothetical protein 987800..988927 Pseudomonas putida GB-1 5868614 YP_001667102.1 CDS PputGB1_0856 NC_010322.1 989054 989437 D PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0966 hypothetical protein; hypothetical protein 989054..989437 Pseudomonas putida GB-1 5868615 YP_001667103.1 CDS PputGB1_0857 NC_010322.1 989618 990181 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0985 acetyltransferase, GNAT family; N-acetyltransferase GCN5 989618..990181 Pseudomonas putida GB-1 5868616 YP_001667104.1 CDS PputGB1_0858 NC_010322.1 990238 990765 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE1096 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 990238..990765 Pseudomonas putida GB-1 5868617 YP_001667105.1 CDS PputGB1_0859 NC_010322.1 990762 991733 D PFAM: FecR protein; KEGG: neu:NE1095 putative transmembrane sensor; anti-FecI sigma factor FecR 990762..991733 Pseudomonas putida GB-1 5868618 YP_001667106.1 CDS PputGB1_0860 NC_010322.1 991810 994335 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 991810..994335 Pseudomonas putida GB-1 5868619 YP_001667107.1 CDS PputGB1_0861 NC_010322.1 994402 994941 D KEGG: pen:PSEEN0987 hypothetical protein; hypothetical protein 994402..994941 Pseudomonas putida GB-1 5868620 YP_001667108.1 CDS PputGB1_0862 NC_010322.1 994962 995348 D PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN0989 hypothetical protein; hypothetical protein 994962..995348 Pseudomonas putida GB-1 5868621 YP_001667109.1 CDS PputGB1_0863 NC_010322.1 995487 996599 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(995487..996599) Pseudomonas putida GB-1 5868622 YP_001667110.1 CDS PputGB1_0864 NC_010322.1 996599 997633 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(996599..997633) Pseudomonas putida GB-1 5868623 YP_001667111.1 CDS PputGB1_0865 NC_010322.1 997772 998626 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN0992 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 997772..998626 Pseudomonas putida GB-1 5868624 YP_001667112.1 CDS PputGB1_0866 NC_010322.1 998638 999432 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0993 phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein 998638..999432 Pseudomonas putida GB-1 5868625 YP_001667113.1 CDS PputGB1_0867 NC_010322.1 999426 1000253 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0994 phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 999426..1000253 Pseudomonas putida GB-1 5868626 YP_001667114.1 CDS PputGB1_0868 NC_010322.1 1000250 1001017 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0995 phosphonate ABC transporter, permease protein; phosphonate ABC transporter inner membrane subunit 1000250..1001017 Pseudomonas putida GB-1 5868627 YP_001667115.1 CDS PputGB1_0869 NC_010322.1 1001032 1001919 R PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN0996 hypothetical protein; hypothetical protein complement(1001032..1001919) Pseudomonas putida GB-1 5868628 YP_001667116.1 CDS PputGB1_0870 NC_010322.1 1002016 1002495 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0998 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(1002016..1002495) Pseudomonas putida GB-1 5868629 YP_001667117.1 CDS PputGB1_0871 NC_010322.1 1002599 1003222 R KEGG: ppr:PBPRA0472 hypothetical protein; hypothetical protein complement(1002599..1003222) Pseudomonas putida GB-1 5868630 YP_001667118.1 CDS PputGB1_0872 NC_010322.1 1003548 1004054 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3268 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1003548..1004054 Pseudomonas putida GB-1 5868631 YP_001667119.1 CDS PputGB1_0873 NC_010322.1 1004054 1004995 D PFAM: FecR protein; KEGG: mms:mma_3496 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 1004054..1004995 Pseudomonas putida GB-1 5868632 YP_001667120.1 CDS PputGB1_0874 NC_010322.1 1005070 1007592 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: dac:Daci_3273 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1005070..1007592 Pseudomonas putida GB-1 5868633 YP_001667121.1 CDS queA NC_010322.1 1007906 1008955 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1007906..1008955 Pseudomonas putida GB-1 5868635 YP_001667122.1 CDS tgt NC_010322.1 1008952 1010085 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1008952..1010085 Pseudomonas putida GB-1 5868636 YP_001667123.1 CDS yajC NC_010322.1 1010128 1010463 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1010128..1010463 Pseudomonas putida GB-1 5868637 YP_001667124.1 CDS secD NC_010322.1 1010527 1012389 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1010527..1012389 Pseudomonas putida GB-1 5868638 YP_001667125.1 CDS secF NC_010322.1 1012400 1013308 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1012400..1013308 Pseudomonas putida GB-1 5868639 YP_001667126.1 CDS PputGB1_0880 NC_010322.1 1013439 1013969 D PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1004 hypothetical protein; hypothetical protein 1013439..1013969 Pseudomonas putida GB-1 5868640 YP_001667127.1 CDS PputGB1_0881 NC_010322.1 1014077 1014895 R PFAM: inositol monophosphatase; KEGG: pen:PSEEN1005 inositol-1-monophosphatase (IMPase) (inositol-1-phosphatase) (I-1-Pase); inositol-phosphate phosphatase complement(1014077..1014895) Pseudomonas putida GB-1 5868641 YP_001667128.1 CDS PputGB1_0882 NC_010322.1 1015047 1015802 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN1006 tRNA/rRNA methyltransferase, TrmH family, group 1; RNA methyltransferase 1015047..1015802 Pseudomonas putida GB-1 5868642 YP_001667129.1 CDS PputGB1_0883 NC_010322.1 1015806 1016591 D TIGRFAM: serine O-acetyltransferase; KEGG: pen:PSEEN1007 serine O-acetyltransferase; serine O-acetyltransferase 1015806..1016591 Pseudomonas putida GB-1 5868643 YP_001667130.1 CDS PputGB1_0884 NC_010322.1 1016714 1017262 D TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN1009 iron-sulfur cluster assembly transcription factor IscR; BadM/Rrf2 family transcriptional regulator 1016714..1017262 Pseudomonas putida GB-1 5868644 YP_001667131.1 CDS PputGB1_0885 NC_010322.1 1017309 1018523 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1017309..1018523 Pseudomonas putida GB-1 5868645 YP_001667132.1 CDS PputGB1_0886 NC_010322.1 1018570 1018956 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pfl:PFL_4964 FeS cluster assembly scaffold IscU; scaffold protein 1018570..1018956 Pseudomonas putida GB-1 5868646 YP_001667133.1 CDS PputGB1_0887 NC_010322.1 1018982 1019305 D TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pen:PSEEN1012 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 1018982..1019305 Pseudomonas putida GB-1 5868647 YP_001667134.1 CDS hscB NC_010322.1 1019314 1019835 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1019314..1019835 Pseudomonas putida GB-1 5868648 YP_001667135.1 CDS hscA NC_010322.1 1019878 1021740 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1019878..1021740 Pseudomonas putida GB-1 5868649 YP_001667136.1 CDS PputGB1_0890 NC_010322.1 1021744 1022085 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pen:PSEEN1015 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1021744..1022085 Pseudomonas putida GB-1 5868650 YP_001667137.1 CDS PputGB1_0891 NC_010322.1 1022096 1022296 D TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: pen:PSEEN1016 hypothetical protein; FeS assembly protein IscX 1022096..1022296 Pseudomonas putida GB-1 5868651 YP_001667138.1 CDS ndk NC_010322.1 1022385 1022810 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1022385..1022810 Pseudomonas putida GB-1 5868652 YP_001667139.1 CDS PputGB1_0893 NC_010322.1 1022839 1023984 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pen:PSEEN1018 radical SAM enzyme, Cfr family; radical SAM protein 1022839..1023984 Pseudomonas putida GB-1 5868653 YP_001667140.1 CDS PputGB1_0894 NC_010322.1 1023999 1024760 D KEGG: pen:PSEEN1019 type IV pili biogenesis protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1023999..1024760 Pseudomonas putida GB-1 5868654 YP_001667141.1 CDS PputGB1_0895 NC_010322.1 1024757 1025791 D SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN1020 transcriptional regulator; XRE family transcriptional regulator 1024757..1025791 Pseudomonas putida GB-1 5868655 YP_001667142.1 CDS ispG NC_010322.1 1025795 1026904 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1025795..1026904 Pseudomonas putida GB-1 5868656 YP_001667143.1 CDS hisS NC_010322.1 1026930 1028219 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1026930..1028219 Pseudomonas putida GB-1 5868657 YP_001667144.1 CDS PputGB1_0898 NC_010322.1 1028259 1028900 D KEGG: pen:PSEEN1023 hypothetical protein; hypothetical protein 1028259..1028900 Pseudomonas putida GB-1 5868658 YP_001667145.1 CDS PputGB1_0899 NC_010322.1 1028901 1030043 D TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1024 hypothetical protein; outer membrane assembly lipoprotein YfgL 1028901..1030043 Pseudomonas putida GB-1 5868659 YP_001667146.1 CDS engA NC_010322.1 1030160 1031623 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1030160..1031623 Pseudomonas putida GB-1 5868660 YP_001667147.1 CDS PputGB1_0901 NC_010322.1 1031763 1032911 D catalyzes the transfer of an amino moiety; putative aminotransferase 1031763..1032911 Pseudomonas putida GB-1 5868661 YP_001667148.1 CDS PputGB1_0902 NC_010322.1 1032899 1033690 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1027 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1032899..1033690 Pseudomonas putida GB-1 5868662 YP_001667149.1 CDS PputGB1_0903 NC_010322.1 1033748 1036300 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein; flavodoxin/nitric oxide synthase complement(1033748..1036300) Pseudomonas putida GB-1 5868663 YP_001667150.1 CDS PputGB1_0904 NC_010322.1 1036406 1038712 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1029 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1036406..1038712) Pseudomonas putida GB-1 5868664 YP_001667151.1 CDS PputGB1_0905 NC_010322.1 1038935 1039615 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN1031 PKHD-type hydroxylase; iron-uptake factor; putative hydroxylase 1038935..1039615 Pseudomonas putida GB-1 5868665 YP_001667152.1 CDS PputGB1_0906 NC_010322.1 1039619 1040368 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1032 hypothetical protein; Sel1 domain-containing protein 1039619..1040368 Pseudomonas putida GB-1 5868666 YP_001667153.1 CDS PputGB1_0907 NC_010322.1 1040478 1041011 D KEGG: pen:PSEEN1033 hypothetical protein; hypothetical protein 1040478..1041011 Pseudomonas putida GB-1 5868667 YP_001667154.1 CDS PputGB1_0908 NC_010322.1 1041051 1042214 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN1035 ornithine decarboxylase; ornithine decarboxylase complement(1041051..1042214) Pseudomonas putida GB-1 5868668 YP_001667155.1 CDS PputGB1_0909 NC_010322.1 1042709 1043206 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1037 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 1042709..1043206 Pseudomonas putida GB-1 5868669 YP_001667156.1 CDS PputGB1_0910 NC_010322.1 1043227 1044189 D PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 1043227..1044189 Pseudomonas putida GB-1 5868670 YP_001667157.1 CDS PputGB1_0911 NC_010322.1 1044298 1046727 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN1039 FecA-like outer membrane receptor; TonB-dependent siderophore receptor 1044298..1046727 Pseudomonas putida GB-1 5868671 YP_001667158.1 CDS PputGB1_0912 NC_010322.1 1046833 1047990 R KEGG: pen:PSEEN1040 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(1046833..1047990) Pseudomonas putida GB-1 5868672 YP_001667159.1 CDS PputGB1_0913 NC_010322.1 1047987 1048640 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1041 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1047987..1048640) Pseudomonas putida GB-1 5868673 YP_001667160.1 CDS PputGB1_0914 NC_010322.1 1048637 1049551 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1042 glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; substrate-binding region of ABC-type glycine betaine transport system complement(1048637..1049551) Pseudomonas putida GB-1 5868674 YP_001667161.1 CDS PputGB1_0915 NC_010322.1 1049566 1050279 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1043 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1049566..1050279) Pseudomonas putida GB-1 5868675 YP_001667162.1 CDS prfC NC_010322.1 1050839 1052422 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1050839..1052422 Pseudomonas putida GB-1 5868676 YP_001667163.1 CDS PputGB1_0917 NC_010322.1 1052456 1053535 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1048 periplasmic polyamine-binding protein; extracellular solute-binding protein complement(1052456..1053535) Pseudomonas putida GB-1 5868677 YP_001667164.1 CDS PputGB1_0918 NC_010322.1 1053588 1053929 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN1049 hypothetical protein; hypothetical protein complement(1053588..1053929) Pseudomonas putida GB-1 5868678 YP_001667165.1 CDS PputGB1_0919 NC_010322.1 1053963 1055390 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1050 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1053963..1055390) Pseudomonas putida GB-1 5868679 YP_001667166.1 CDS PputGB1_0920 NC_010322.1 1055434 1056258 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1051 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1055434..1056258) Pseudomonas putida GB-1 5868680 YP_001667167.1 CDS dppF NC_010322.1 1056530 1057498 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit complement(1056530..1057498) Pseudomonas putida GB-1 5868681 YP_001667168.1 CDS PputGB1_0922 NC_010322.1 1057498 1058466 R KEGG: pen:PSEEN1054 dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1057498..1058466) Pseudomonas putida GB-1 5868682 YP_001667169.1 CDS PputGB1_0923 NC_010322.1 1058477 1059403 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1055 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1058477..1059403) Pseudomonas putida GB-1 5868683 YP_001667170.1 CDS PputGB1_0924 NC_010322.1 1059414 1060424 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1056 dipeptide ABC transporter, permease protein; alkaline phosphatase complement(1059414..1060424) Pseudomonas putida GB-1 5868684 YP_001667171.1 CDS PputGB1_0925 NC_010322.1 1060516 1062126 R PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1057 dipeptide ABC transporter, periplasmic dipeptide-binding protein; extracellular solute-binding protein complement(1060516..1062126) Pseudomonas putida GB-1 5868685 YP_001667172.1 CDS PputGB1_0926 NC_010322.1 1062205 1063584 R PFAM: outer membrane porin; KEGG: pen:PSEEN1058 porin, OprD family; outer membrane porin complement(1062205..1063584) Pseudomonas putida GB-1 5868686 YP_001667173.1 CDS PputGB1_0927 NC_010322.1 1063814 1065406 R PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1059 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein complement(1063814..1065406) Pseudomonas putida GB-1 5868687 YP_001667174.1 CDS PputGB1_0928 NC_010322.1 1065554 1067179 R PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1060 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein complement(1065554..1067179) Pseudomonas putida GB-1 5868688 YP_001667175.1 CDS PputGB1_0929 NC_010322.1 1067508 1068224 R PFAM: protein of unknown function DUF541; KEGG: pen:PSEEN1061 hypothetical protein; hypothetical protein complement(1067508..1068224) Pseudomonas putida GB-1 5868689 YP_001667176.1 CDS PputGB1_0930 NC_010322.1 1068426 1069682 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1062 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1068426..1069682 Pseudomonas putida GB-1 5868690 YP_001667177.1 CDS PputGB1_0931 NC_010322.1 1069679 1070242 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: pen:PSEEN1063 response regulator, RegA/PrrA/ActR type; two component Fis family transcriptional regulator 1069679..1070242 Pseudomonas putida GB-1 5868691 YP_001667178.1 CDS PputGB1_0932 NC_010322.1 1070398 1071339 D PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN1066 hypothetical protein; auxin efflux carrier 1070398..1071339 Pseudomonas putida GB-1 5868692 YP_001667179.1 CDS PputGB1_0933 NC_010322.1 1071396 1072754 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1067 aromatic amino acid transporter, APC family; amino acid permease-associated protein 1071396..1072754 Pseudomonas putida GB-1 5868693 YP_001667180.1 CDS PputGB1_0934 NC_010322.1 1072819 1073193 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1068 4-carboxymuconolactone decarboxylase PcaC; carboxymuconolactone decarboxylase complement(1072819..1073193) Pseudomonas putida GB-1 5868694 YP_001667181.1 CDS PputGB1_0935 NC_010322.1 1073204 1074229 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pen:PSEEN1069 K+-dependent Na+/Ca+ antiporter; CaCA family Na(+)/Ca(+) antiporter complement(1073204..1074229) Pseudomonas putida GB-1 5868695 YP_001667182.1 CDS PputGB1_0936 NC_010322.1 1074308 1074682 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pen:PSEEN1070 lipoprotein, RplA family; rare lipoprotein A complement(1074308..1074682) Pseudomonas putida GB-1 5868696 YP_001667183.1 CDS gatB NC_010322.1 1074829 1076274 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1074829..1076274) Pseudomonas putida GB-1 5868697 YP_001667184.1 CDS gatA NC_010322.1 1076286 1077737 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1076286..1077737) Pseudomonas putida GB-1 5868698 YP_001667185.1 CDS gatC NC_010322.1 1077753 1078040 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1077753..1078040) Pseudomonas putida GB-1 5868699 YP_001667186.1 CDS PputGB1_0940 NC_010322.1 1078246 1079283 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1078246..1079283 Pseudomonas putida GB-1 5868700 YP_001667187.1 CDS PputGB1_0941 NC_010322.1 1079510 1080487 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1079510..1080487 Pseudomonas putida GB-1 5868701 YP_001667188.1 CDS PputGB1_0942 NC_010322.1 1080487 1080975 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: pen:PSEEN1076 rod shape-determining protein MreD; rod shape-determining protein MreD 1080487..1080975 Pseudomonas putida GB-1 5868702 YP_001667189.1 CDS PputGB1_0943 NC_010322.1 1081008 1081616 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1081008..1081616 Pseudomonas putida GB-1 5868703 YP_001667190.1 CDS PputGB1_0944 NC_010322.1 1081674 1083131 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1078 ibonuclease G; ribonuclease 1081674..1083131 Pseudomonas putida GB-1 5868704 YP_001667191.1 CDS PputGB1_0945 NC_010322.1 1083220 1087035 D KEGG: pen:PSEEN1079 hypothetical protein; hypothetical protein 1083220..1087035 Pseudomonas putida GB-1 5868705 YP_001667192.1 CDS PputGB1_0946 NC_010322.1 1087044 1087895 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1080 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1087044..1087895 Pseudomonas putida GB-1 5868706 YP_001667193.1 CDS PputGB1_0947 NC_010322.1 1087898 1089337 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1081 peptidase U62 TldD; peptidase U62 modulator of DNA gyrase 1087898..1089337 Pseudomonas putida GB-1 5868707 YP_001667194.1 CDS PputGB1_0948 NC_010322.1 1089395 1089916 R PFAM: protein of unknown function DUF615; KEGG: pen:PSEEN1082 hypothetical protein; hypothetical protein complement(1089395..1089916) Pseudomonas putida GB-1 5868708 YP_001667195.1 CDS PputGB1_0949 NC_010322.1 1090026 1091372 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1083 peptidase U62 TldE; peptidase U62 modulator of DNA gyrase 1090026..1091372 Pseudomonas putida GB-1 5868709 YP_001667196.1 CDS PputGB1_0950 NC_010322.1 1091501 1091902 D KEGG: pen:PSEEN1084 hypothetical protein; hypothetical protein 1091501..1091902 Pseudomonas putida GB-1 5868710 YP_001667197.1 CDS fumC NC_010322.1 1091892 1093271 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1091892..1093271 Pseudomonas putida GB-1 5868711 YP_001667198.1 CDS PputGB1_0952 NC_010322.1 1093300 1093761 D KEGG: pen:PSEEN1086 hypothetical protein; hypothetical protein 1093300..1093761 Pseudomonas putida GB-1 5868712 YP_001667199.1 CDS PputGB1_0953 NC_010322.1 1093763 1094374 D PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1087 superoxide dismutase; superoxide dismutase 1093763..1094374 Pseudomonas putida GB-1 5868713 YP_001667200.1 CDS PputGB1_0954 NC_010322.1 1094386 1095279 D PFAM: zinc/iron permease; KEGG: pen:PSEEN1088 hypothetical protein; zinc/iron permease 1094386..1095279 Pseudomonas putida GB-1 5868714 YP_001667201.1 CDS PputGB1_0955 NC_010322.1 1095325 1095597 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pen:PSEEN1089 phosphocarrier protein (HPr-like) NPr; phosphotransferase system, phosphocarrier protein HPr complement(1095325..1095597) Pseudomonas putida GB-1 5868715 YP_001667202.1 CDS PputGB1_0956 NC_010322.1 1095617 1096471 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1090 uncharacterized ATPase; hypothetical protein complement(1095617..1096471) Pseudomonas putida GB-1 5868716 YP_001667203.1 CDS PputGB1_0957 NC_010322.1 1096474 1096938 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pen:PSEEN1091 phosphotransferase system, nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(1096474..1096938) Pseudomonas putida GB-1 5868717 YP_001667204.1 CDS PputGB1_0958 NC_010322.1 1096951 1097259 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pen:PSEEN1092 sigma N (sigma 54) modulator RpoX; sigma 54 modulation protein/ribosomal protein S30EA complement(1096951..1097259) Pseudomonas putida GB-1 5868718 YP_001667205.1 CDS PputGB1_0959 NC_010322.1 1097339 1098808 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(1097339..1098808) Pseudomonas putida GB-1 5868719 YP_001667206.1 CDS PputGB1_0960 NC_010322.1 1099008 1099733 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1094 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1099008..1099733) Pseudomonas putida GB-1 5868720 YP_001667207.1 CDS PputGB1_0961 NC_010322.1 1099734 1100258 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: pen:PSEEN1095 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA complement(1099734..1100258) Pseudomonas putida GB-1 5868721 YP_001667208.1 CDS PputGB1_0962 NC_010322.1 1100245 1100817 R PFAM: protein of unknown function DUF1239; KEGG: pen:PSEEN1096 hypothetical protein; hypothetical protein complement(1100245..1100817) Pseudomonas putida GB-1 5868722 YP_001667209.1 CDS PputGB1_0963 NC_010322.1 1100826 1101350 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pen:PSEEN1097 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1100826..1101350) Pseudomonas putida GB-1 5868723 YP_001667210.1 CDS PputGB1_0964 NC_010322.1 1101363 1102337 R KEGG: pen:PSEEN1098 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(1101363..1102337) Pseudomonas putida GB-1 5868724 YP_001667211.1 CDS PputGB1_0965 NC_010322.1 1102586 1103395 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1099 toluene tolerance ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 1102586..1103395 Pseudomonas putida GB-1 5868725 YP_001667212.1 CDS PputGB1_0966 NC_010322.1 1103395 1104192 D PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN1100 toluene tolerance ABC efflux transporter, permease; hypothetical protein 1103395..1104192 Pseudomonas putida GB-1 5868726 YP_001667213.1 CDS PputGB1_0967 NC_010322.1 1104192 1104677 D PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN1101 toluene tolerance ABC transporter, periplasmic substrate-binding protein; hypothetical protein 1104192..1104677 Pseudomonas putida GB-1 5868727 YP_001667214.1 CDS PputGB1_0968 NC_010322.1 1104687 1105334 D PFAM: toluene tolerance family protein; KEGG: pen:PSEEN1102 toluene tolerance protein Ttg2D; toluene tolerance family protein 1104687..1105334 Pseudomonas putida GB-1 5868728 YP_001667215.1 CDS PputGB1_0969 NC_010322.1 1105331 1105633 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN1103 toluene-tolerance protein TtgE; anti-sigma-factor antagonist 1105331..1105633 Pseudomonas putida GB-1 5868729 YP_001667216.1 CDS PputGB1_0970 NC_010322.1 1105751 1105990 D PFAM: BolA family protein; KEGG: pen:PSEEN1104 toluene-tolerance protein Ttg2F; BolA family protein 1105751..1105990 Pseudomonas putida GB-1 5868730 YP_001667217.1 CDS PputGB1_0971 NC_010322.1 1106014 1107279 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1106014..1107279 Pseudomonas putida GB-1 5868731 YP_001667218.1 CDS hisG NC_010322.1 1107372 1108007 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1107372..1108007 Pseudomonas putida GB-1 5868732 YP_001667219.1 CDS hisD NC_010322.1 1108134 1109459 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1108134..1109459 Pseudomonas putida GB-1 5868733 YP_001667220.1 CDS PputGB1_0974 NC_010322.1 1109462 1110508 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1109462..1110508 Pseudomonas putida GB-1 5868734 YP_001667221.1 CDS PputGB1_0975 NC_010322.1 1110456 1111706 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: hch:HCH_03222 protein containing hemopexin repeats; hypothetical protein complement(1110456..1111706) Pseudomonas putida GB-1 5868735 YP_001667222.1 CDS PputGB1_0976 NC_010322.1 1111845 1112495 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN4453 transcriptional regulator, GntR family; GntR family transcriptional regulator 1111845..1112495 Pseudomonas putida GB-1 5868736 YP_001667223.1 CDS PputGB1_0977 NC_010322.1 1112509 1113789 D TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4452 cyanate MFS transporter; cyanate transporter 1112509..1113789 Pseudomonas putida GB-1 5868737 YP_001667224.1 CDS PputGB1_0978 NC_010322.1 1113861 1114337 D KEGG: pen:PSEEN4451 hypothetical protein; hypothetical protein 1113861..1114337 Pseudomonas putida GB-1 5868738 YP_001667225.1 CDS PputGB1_0979 NC_010322.1 1114330 1114671 D PFAM: Excinuclease ABC C subunit domain protein; KEGG: pen:PSEEN4450 endonuclease; GIY-YIG nuclease superfamily protein 1114330..1114671 Pseudomonas putida GB-1 5868739 YP_001667226.1 CDS PputGB1_0980 NC_010322.1 1114619 1115626 R PFAM: 37kDa nucleoid-associated protein; KEGG: pen:PSEEN4449 nucleoid-associated protein; nucleoid-associated protein NdpA complement(1114619..1115626) Pseudomonas putida GB-1 5868740 YP_001667227.1 CDS PputGB1_0981 NC_010322.1 1115997 1116278 D PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN4448 DNA-binding protein HU form N; histone family protein DNA-binding protein 1115997..1116278 Pseudomonas putida GB-1 5868741 YP_001667228.1 CDS PputGB1_0982 NC_010322.1 1116329 1117279 R PFAM: protein of unknown function DUF890; KEGG: pen:PSEEN4447 hypothetical protein; putative SAM-dependent methyltransferase complement(1116329..1117279) Pseudomonas putida GB-1 5868742 YP_001667229.1 CDS valS NC_010322.1 1117442 1120288 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1117442..1120288) Pseudomonas putida GB-1 5868743 YP_001667230.1 CDS PputGB1_0984 NC_010322.1 1120453 1120818 R KEGG: pen:PSEEN4445 hypothetical protein; hypothetical protein complement(1120453..1120818) Pseudomonas putida GB-1 5868744 YP_001667231.1 CDS PputGB1_0985 NC_010322.1 1120824 1121252 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1120824..1121252) Pseudomonas putida GB-1 5868745 YP_001667232.1 CDS PputGB1_0986 NC_010322.1 1121301 1122794 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1121301..1122794) Pseudomonas putida GB-1 5868746 YP_001667233.1 CDS PputGB1_0987 NC_010322.1 1123096 1124211 D PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4442 hypothetical protein; YjgP/YjgQ family permease 1123096..1124211 Pseudomonas putida GB-1 5868747 YP_001667234.1 CDS PputGB1_0988 NC_010322.1 1124204 1125265 D PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4441 hypothetical protein; YjgP/YjgQ family permease 1124204..1125265 Pseudomonas putida GB-1 5868748 YP_001667235.1 CDS PputGB1_0989 NC_010322.1 1125326 1125814 R PFAM: RDD domain containing protein; KEGG: pen:PSEEN4440 hypothetical protein; RDD domain-containing protein complement(1125326..1125814) Pseudomonas putida GB-1 5868749 YP_001667236.1 CDS PputGB1_0990 NC_010322.1 1125905 1126117 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4439 cold shock protein; cold-shock DNA-binding domain-containing protein complement(1125905..1126117) Pseudomonas putida GB-1 5868750 YP_001667237.1 CDS PputGB1_0991 NC_010322.1 1126476 1127597 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pen:PSEEN4438 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent; glycine cleavage system T protein complement(1126476..1127597) Pseudomonas putida GB-1 5868751 YP_001667238.1 CDS PputGB1_0992 NC_010322.1 1127625 1129001 R KEGG: pen:PSEEN4437 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1127625..1129001) Pseudomonas putida GB-1 5868752 YP_001667239.1 CDS PputGB1_0993 NC_010322.1 1129154 1132009 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1129154..1132009) Pseudomonas putida GB-1 5868753 YP_001667240.1 CDS PputGB1_0994 NC_010322.1 1132021 1132404 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1132021..1132404) Pseudomonas putida GB-1 5868754 YP_001667241.1 CDS PputGB1_0995 NC_010322.1 1132683 1133888 R PFAM: sodium/glutamate symporter; KEGG: cvi:CV_1105 sodium/glutamate symport carrier protein; sodium/glutamate symporter complement(1132683..1133888) Pseudomonas putida GB-1 5868755 YP_001667242.1 CDS PputGB1_0996 NC_010322.1 1134016 1135524 R PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN4432 sigma-54 dependent transcriptional regulator; putative PAS/PAC sensor protein complement(1134016..1135524) Pseudomonas putida GB-1 5868756 YP_001667243.1 CDS PputGB1_0997 NC_010322.1 1135684 1136052 R KEGG: pen:PSEEN4431 hypothetical protein; hypothetical protein complement(1135684..1136052) Pseudomonas putida GB-1 5868757 YP_001667244.1 CDS PputGB1_0998 NC_010322.1 1136109 1137038 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1136109..1137038) Pseudomonas putida GB-1 5868758 YP_001667245.1 CDS PputGB1_0999 NC_010322.1 1137108 1138118 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase complement(1137108..1138118) Pseudomonas putida GB-1 5868759 YP_001667246.1 CDS PputGB1_1000 NC_010322.1 1138188 1139447 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(1138188..1139447) Pseudomonas putida GB-1 5868760 YP_001667247.1 CDS PputGB1_1001 NC_010322.1 1139481 1140908 R TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4427 arginine/ornithine antiporter; arginine/ornithine antiporter complement(1139481..1140908) Pseudomonas putida GB-1 5868761 YP_001667248.1 CDS PputGB1_1002 NC_010322.1 1141345 1142772 D TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4426 arginine/ornithine antiporter; arginine/ornithine antiporter 1141345..1142772 Pseudomonas putida GB-1 5868762 YP_001667249.1 CDS PputGB1_1003 NC_010322.1 1142752 1143165 R PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN4424 hypothetical protein; hypothetical protein complement(1142752..1143165) Pseudomonas putida GB-1 5868763 YP_001667250.1 CDS PputGB1_1004 NC_010322.1 1143220 1143813 R PFAM: Haem oxygenase; KEGG: pen:PSEEN4423 heme oxygenase; heme oxygenase complement(1143220..1143813) Pseudomonas putida GB-1 5868764 YP_001667251.1 CDS PputGB1_1005 NC_010322.1 1144017 1146605 R TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4422 TonB-dependent outer membrane heme receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(1144017..1146605) Pseudomonas putida GB-1 5868765 YP_001667252.1 CDS PputGB1_1006 NC_010322.1 1146732 1147694 R PFAM: FecR protein; KEGG: pen:PSEEN4421 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(1146732..1147694) Pseudomonas putida GB-1 5868766 YP_001667253.1 CDS PputGB1_1007 NC_010322.1 1147782 1148294 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4420 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(1147782..1148294) Pseudomonas putida GB-1 5868767 YP_001667254.1 CDS PputGB1_1008 NC_010322.1 1148541 1149542 R KEGG: pen:PSEEN4418 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1148541..1149542) Pseudomonas putida GB-1 5868768 YP_001667255.1 CDS PputGB1_1009 NC_010322.1 1149807 1151633 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1149807..1151633 Pseudomonas putida GB-1 5868769 YP_001667256.1 CDS glk NC_010322.1 1151630 1152592 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1151630..1152592 Pseudomonas putida GB-1 5868770 YP_001667257.1 CDS PputGB1_1011 NC_010322.1 1152758 1153483 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4415 two-component response regulator GltR; two component transcriptional regulator 1152758..1153483 Pseudomonas putida GB-1 5868771 YP_001667258.1 CDS PputGB1_1012 NC_010322.1 1153464 1154918 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4414 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1153464..1154918 Pseudomonas putida GB-1 5868772 YP_001667259.1 CDS PputGB1_1013 NC_010322.1 1155064 1156350 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4412 glucose ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 1155064..1156350 Pseudomonas putida GB-1 5868773 YP_001667260.1 CDS PputGB1_1014 NC_010322.1 1156532 1157440 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4411 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1156532..1157440 Pseudomonas putida GB-1 5868774 YP_001667261.1 CDS PputGB1_1015 NC_010322.1 1157433 1158278 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4410 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1157433..1158278 Pseudomonas putida GB-1 5868775 YP_001667262.1 CDS PputGB1_1016 NC_010322.1 1158282 1159436 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN4409 glucose ABC transporter, ATP-binding subunit; ABC transporter-like protein 1158282..1159436 Pseudomonas putida GB-1 5868776 YP_001667263.1 CDS PputGB1_1017 NC_010322.1 1159478 1160821 D PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN4408 glucose-selective porin OprB; carbohydrate-selective porin OprB 1159478..1160821 Pseudomonas putida GB-1 5868777 YP_001667264.1 CDS PputGB1_1018 NC_010322.1 1160939 1161793 D PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN4407 hypothetical protein; aldose 1-epimerase 1160939..1161793 Pseudomonas putida GB-1 5868778 YP_001667265.1 CDS PputGB1_1019 NC_010322.1 1161786 1162658 R Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR complement(1161786..1162658) Pseudomonas putida GB-1 5868779 YP_001667266.1 CDS PputGB1_1020 NC_010322.1 1162861 1164330 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1162861..1164330 Pseudomonas putida GB-1 5868780 YP_001667267.1 CDS PputGB1_1021 NC_010322.1 1164317 1165030 D TIGRFAM: 6-phosphogluconolactonase; KEGG: pen:PSEEN4404 6-phosphogluconolactonase; 6-phosphogluconolactonase 1164317..1165030 Pseudomonas putida GB-1 5868781 YP_001667268.1 CDS PputGB1_1022 NC_010322.1 1165048 1165728 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1165048..1165728 Pseudomonas putida GB-1 5868782 YP_001667269.1 CDS PputGB1_1023 NC_010322.1 1165883 1167556 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: pen:PSEEN4399 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(1165883..1167556) Pseudomonas putida GB-1 5868783 YP_001667270.1 CDS PputGB1_1024 NC_010322.1 1167928 1168755 R PFAM: peptidase M23B; KEGG: pen:PSEEN4398 peptidase, M23/M37 family; peptidase M23B complement(1167928..1168755) Pseudomonas putida GB-1 5868784 YP_001667271.1 CDS xseA NC_010322.1 1168759 1170150 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1168759..1170150) Pseudomonas putida GB-1 5868785 YP_001667272.1 CDS PputGB1_1026 NC_010322.1 1170225 1171103 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4396 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1170225..1171103) Pseudomonas putida GB-1 5868786 YP_001667273.1 CDS PputGB1_1027 NC_010322.1 1171201 1171956 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN4395 hypothetical protein; hypothetical protein 1171201..1171956 Pseudomonas putida GB-1 5868787 YP_001667274.1 CDS PputGB1_1028 NC_010322.1 1172004 1172561 D KEGG: pen:PSEEN4394 hypothetical protein; hypothetical protein 1172004..1172561 Pseudomonas putida GB-1 5868788 YP_001667275.1 CDS PputGB1_1029 NC_010322.1 1172648 1174117 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1172648..1174117 Pseudomonas putida GB-1 5868789 YP_001667276.1 CDS guaA NC_010322.1 1174196 1175773 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1174196..1175773 Pseudomonas putida GB-1 5868790 YP_001667277.1 CDS PputGB1_1031 NC_010322.1 1175978 1177360 D PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN4390 Mn2+ multicopper oxidase CumA; multicopper oxidase type 3 1175978..1177360 Pseudomonas putida GB-1 5868791 YP_001667278.1 CDS PputGB1_1032 NC_010322.1 1177360 1177839 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pen:PSEEN4389 cytidine/deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 1177360..1177839 Pseudomonas putida GB-1 5868792 YP_001667279.1 CDS PputGB1_1033 NC_010322.1 1177851 1179308 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase complement(1177851..1179308) Pseudomonas putida GB-1 5868793 YP_001667280.1 CDS PputGB1_1034 NC_010322.1 1179541 1183440 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1179541..1183440 Pseudomonas putida GB-1 5868794 YP_001667281.1 CDS PputGB1_1035 NC_010322.1 1183444 1183755 D KEGG: pen:PSEEN4385 hypothetical protein; hypothetical protein 1183444..1183755 Pseudomonas putida GB-1 5868795 YP_001667282.1 CDS PputGB1_1036 NC_010322.1 1183796 1184557 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pmy:Pmen_0516 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC complement(1183796..1184557) Pseudomonas putida GB-1 5868796 YP_001667283.1 CDS PputGB1_1037 NC_010322.1 1184554 1184844 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN5079 twin-arginin translocase subunit B; twin-arginine translocation protein subunit TatB complement(1184554..1184844) Pseudomonas putida GB-1 5868797 YP_001667284.1 CDS PputGB1_1038 NC_010322.1 1184844 1185077 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN4376 twin-arginine translocation protein TatA; twin arginine-targeting protein translocase complement(1184844..1185077) Pseudomonas putida GB-1 5868798 YP_001667285.1 CDS PputGB1_1039 NC_010322.1 1185223 1186188 D PFAM: General secretion pathway protein K; KEGG: pen:PSEEN4375 type II secretion system protein K (XcpX); general secretion pathway protein K 1185223..1186188 Pseudomonas putida GB-1 5868799 YP_001667286.1 CDS PputGB1_1040 NC_010322.1 1186229 1188304 R PFAM: protein of unknown function DUF839; KEGG: pen:PSEEN4284 hypothetical protein; hypothetical protein complement(1186229..1188304) Pseudomonas putida GB-1 5868800 YP_001667287.1 CDS PputGB1_1041 NC_010322.1 1188529 1190169 D KEGG: pen:PSEEN4283 lipoprotein UxpA; lipoprotein UxpA 1188529..1190169 Pseudomonas putida GB-1 5868801 YP_001667288.1 CDS PputGB1_1042 NC_010322.1 1190166 1190591 D KEGG: pen:PSEEN4282 type II secretion protein C; type II secretion protein C 1190166..1190591 Pseudomonas putida GB-1 5868802 YP_001667289.1 CDS PputGB1_1043 NC_010322.1 1190595 1192349 D TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN4281 type II secretion system protein D; general secretion pathway protein D 1190595..1192349 Pseudomonas putida GB-1 5868803 YP_001667290.1 CDS PputGB1_1044 NC_010322.1 1192349 1193797 D PFAM: type II secretion system protein E; KEGG: pen:PSEEN4280 type II secretion system protein E; type II secretion system protein E 1192349..1193797 Pseudomonas putida GB-1 5868804 YP_001667291.1 CDS PputGB1_1045 NC_010322.1 1193801 1195003 D TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pen:PSEEN4279 type II secretion system protein F; general secretion pathway protein F 1193801..1195003 Pseudomonas putida GB-1 5868805 YP_001667292.1 CDS PputGB1_1046 NC_010322.1 1195021 1195455 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN4278 type II secretion system protein G; general secretion pathway protein G 1195021..1195455 Pseudomonas putida GB-1 5868806 YP_001667293.1 CDS PputGB1_1047 NC_010322.1 1195459 1195890 D TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN4277 type II secretion system protein H; general secretion pathway protein H 1195459..1195890 Pseudomonas putida GB-1 5868807 YP_001667294.1 CDS PputGB1_1048 NC_010322.1 1195887 1196255 D PFAM: type II secretion system protein I/J; KEGG: pen:PSEEN4276 type II secretion system protein I; type II secretion system protein I/J 1195887..1196255 Pseudomonas putida GB-1 5868808 YP_001667295.1 CDS PputGB1_1049 NC_010322.1 1196252 1196842 D KEGG: pen:PSEEN4275 type II secretion system protein J; type II secretion system protein J 1196252..1196842 Pseudomonas putida GB-1 5868809 YP_001667296.1 CDS PputGB1_1050 NC_010322.1 1196839 1197912 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: pen:PSEEN4274 type II secretion pathway protein L; general secretion pathway protein L 1196839..1197912 Pseudomonas putida GB-1 5868810 YP_001667297.1 CDS PputGB1_1051 NC_010322.1 1197909 1198295 D KEGG: pen:PSEEN4273 type II secretion system protein M; type II secretion system protein M 1197909..1198295 Pseudomonas putida GB-1 5868811 YP_001667298.1 CDS PputGB1_1052 NC_010322.1 1198292 1198951 D PFAM: type II secretion system protein N; KEGG: pen:PSEEN4272 type II secretion system protein N; type II secretion system protein N 1198292..1198951 Pseudomonas putida GB-1 5868812 YP_001667299.1 CDS PputGB1_1053 NC_010322.1 1199022 1203548 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pap:PSPA7_4642 hemolysin; filamentous hemagglutinin outer membrane protein complement(1199022..1203548) Pseudomonas putida GB-1 5868813 YP_001667300.1 CDS PputGB1_1056 NC_010322.1 1205419 1205973 R KEGG: pen:PSEEN4271 hypothetical protein; hypothetical protein complement(1205419..1205973) Pseudomonas putida GB-1 5868815 YP_001667301.1 CDS PputGB1_1057 NC_010322.1 1205999 1206556 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4270 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase complement(1205999..1206556) Pseudomonas putida GB-1 5868816 YP_001667302.1 CDS PputGB1_1058 NC_010322.1 1206680 1207279 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4269 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1206680..1207279 Pseudomonas putida GB-1 5868817 YP_001667303.1 CDS PputGB1_1059 NC_010322.1 1207324 1207848 D KEGG: pen:PSEEN4268 transferase family protein; transferase 1207324..1207848 Pseudomonas putida GB-1 5868818 YP_001667304.1 CDS PputGB1_1060 NC_010322.1 1207838 1208035 D PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN4267 hypothetical protein; hypothetical protein 1207838..1208035 Pseudomonas putida GB-1 5868819 YP_001667305.1 CDS PputGB1_1061 NC_010322.1 1208100 1208567 D KEGG: pen:PSEEN4266 hypothetical protein; hypothetical protein 1208100..1208567 Pseudomonas putida GB-1 5868820 YP_001667306.1 CDS purT NC_010322.1 1208644 1209825 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1208644..1209825 Pseudomonas putida GB-1 5868821 YP_001667307.1 CDS PputGB1_1063 NC_010322.1 1209858 1211156 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4264 citrate-proton symporter (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter complement(1209858..1211156) Pseudomonas putida GB-1 5868822 YP_001667308.1 CDS PputGB1_1064 NC_010322.1 1211431 1212636 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN4263 hypothetical protein; transporter-associated protein complement(1211431..1212636) Pseudomonas putida GB-1 5868823 YP_001667309.1 CDS PputGB1_1065 NC_010322.1 1212646 1213455 R PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN4262 cytochrome c assembly protein; cytochrome c assembly protein complement(1212646..1213455) Pseudomonas putida GB-1 5868824 YP_001667310.1 CDS PputGB1_1066 NC_010322.1 1213686 1215062 D KEGG: pen:PSEEN4261 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1213686..1215062 Pseudomonas putida GB-1 5868825 YP_001667311.1 CDS rpsP NC_010322.1 1215320 1215571 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1215320..1215571 Pseudomonas putida GB-1 5868826 YP_001667312.1 CDS rimM NC_010322.1 1215577 1216113 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1215577..1216113 Pseudomonas putida GB-1 5868827 YP_001667313.1 CDS trmD NC_010322.1 1216117 1216869 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1216117..1216869 Pseudomonas putida GB-1 5868828 YP_001667314.1 CDS rplS NC_010322.1 1216912 1217262 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1216912..1217262 Pseudomonas putida GB-1 5868829 YP_001667315.1 CDS PputGB1_1071 NC_010322.1 1217357 1217764 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4256 long-chain acyl-CoA thioester hydrolase; thioesterase superfamily protein 1217357..1217764 Pseudomonas putida GB-1 5868830 YP_001667316.1 CDS PputGB1_1072 NC_010322.1 1217768 1219573 R PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger complement(1217768..1219573) Pseudomonas putida GB-1 5868831 YP_001667317.1 CDS xerD NC_010322.1 1219642 1220538 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1219642..1220538 Pseudomonas putida GB-1 5868832 YP_001667318.1 CDS PputGB1_1074 NC_010322.1 1220692 1221435 D KEGG: pen:PSEEN4253 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 1220692..1221435 Pseudomonas putida GB-1 5868833 YP_001667319.1 CDS PputGB1_1075 NC_010322.1 1221519 1222823 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1221519..1222823 Pseudomonas putida GB-1 5868834 YP_001667320.1 CDS PputGB1_1076 NC_010322.1 1222885 1224294 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1222885..1224294 Pseudomonas putida GB-1 5868835 YP_001667321.1 CDS PputGB1_1077 NC_010322.1 1224426 1224845 D KEGG: pen:PSEEN4249 hypothetical protein; response regulator receiver protein 1224426..1224845 Pseudomonas putida GB-1 5868836 YP_001667322.1 CDS PputGB1_1078 NC_010322.1 1224925 1225206 D KEGG: pen:PSEEN4248 hypothetical protein; hypothetical protein 1224925..1225206 Pseudomonas putida GB-1 5868837 YP_001667323.1 CDS PputGB1_1079 NC_010322.1 1225391 1226266 R KEGG: pen:PSEEN4247 hypothetical protein; hypothetical protein complement(1225391..1226266) Pseudomonas putida GB-1 5868838 YP_001667324.1 CDS PputGB1_1080 NC_010322.1 1226287 1227486 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN4246 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(1226287..1227486) Pseudomonas putida GB-1 5868839 YP_001667325.1 CDS PputGB1_1081 NC_010322.1 1227618 1228160 D PFAM: YaeQ family protein; KEGG: pen:PSEEN4245 hypothetical protein; YaeQ family protein 1227618..1228160 Pseudomonas putida GB-1 5868840 YP_001667326.1 CDS PputGB1_1082 NC_010322.1 1228169 1229878 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pen:PSEEN4244 ssDNA specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1228169..1229878 Pseudomonas putida GB-1 5868841 YP_001667327.1 CDS PputGB1_1083 NC_010322.1 1230643 1231506 R hypothetical protein complement(1230643..1231506) Pseudomonas putida GB-1 5868842 YP_001667328.1 CDS PputGB1_1084 NC_010322.1 1231503 1232096 R KEGG: bte:BTH_II1428 hypothetical protein; hypothetical protein complement(1231503..1232096) Pseudomonas putida GB-1 5868843 YP_001667329.1 CDS PputGB1_1085 NC_010322.1 1232371 1232634 R KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein complement(1232371..1232634) Pseudomonas putida GB-1 5868844 YP_001667330.1 CDS PputGB1_1086 NC_010322.1 1233330 1234436 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1235 oxidireductase; NADH:flavin oxidoreductase 1233330..1234436 Pseudomonas putida GB-1 5868845 YP_001667331.1 CDS PputGB1_1087 NC_010322.1 1234506 1235951 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(1234506..1235951) Pseudomonas putida GB-1 5868846 YP_001667332.1 CDS PputGB1_1088 NC_010322.1 1235948 1236754 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1239 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1235948..1236754) Pseudomonas putida GB-1 5868847 YP_001667333.1 CDS PputGB1_1089 NC_010322.1 1236744 1237655 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1240 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1236744..1237655) Pseudomonas putida GB-1 5868848 YP_001667334.1 CDS PputGB1_1090 NC_010322.1 1237657 1238766 R KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(1237657..1238766) Pseudomonas putida GB-1 5868849 YP_001667335.1 CDS PputGB1_1091 NC_010322.1 1238777 1239928 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1242 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(1238777..1239928) Pseudomonas putida GB-1 5868850 YP_001667336.1 CDS PputGB1_1092 NC_010322.1 1240146 1240826 D PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN1243 hypothetical protein; hypothetical protein 1240146..1240826 Pseudomonas putida GB-1 5868851 YP_001667337.1 CDS PputGB1_1093 NC_010322.1 1240986 1242608 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1245 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1240986..1242608 Pseudomonas putida GB-1 5868852 YP_001667338.1 CDS PputGB1_1094 NC_010322.1 1242614 1243120 D PFAM: CheW domain protein; KEGG: pen:PSEEN1246 chemotaxis signal transduction protein; CheW domain protein; CheW protein 1242614..1243120 Pseudomonas putida GB-1 5868853 YP_001667339.1 CDS PputGB1_1095 NC_010322.1 1243117 1244391 D PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN1247 methyltransferase, CheR-like; TPR repeat-containing CheR-type MCP methyltransferase 1243117..1244391 Pseudomonas putida GB-1 5868854 YP_001667340.1 CDS PputGB1_1096 NC_010322.1 1244388 1245053 D PFAM: CheW domain protein; KEGG: pen:PSEEN1248 chemotaxis signal transduction protein; CheW domain protein; CheW protein 1244388..1245053 Pseudomonas putida GB-1 5868855 YP_001667341.1 CDS PputGB1_1097 NC_010322.1 1245050 1247353 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN1249 sensor histidine kinase/response regulator hybrid; CheA signal transduction histidine kinase 1245050..1247353 Pseudomonas putida GB-1 5868856 YP_001667342.1 CDS PputGB1_1098 NC_010322.1 1247350 1248363 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1247350..1248363 Pseudomonas putida GB-1 5868857 YP_001667343.1 CDS PputGB1_1099 NC_010322.1 1248415 1249419 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN1251 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase 1248415..1249419 Pseudomonas putida GB-1 5868858 YP_001667344.1 CDS PputGB1_1100 NC_010322.1 1249732 1250646 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pen:PSEEN1254 peptide chain release factor 2; peptide chain release factor 2 1249732..1250646 Pseudomonas putida GB-1 5868859 YP_001667345.1 CDS lysS NC_010322.1 1250740 1252242 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1250740..1252242 Pseudomonas putida GB-1 5868860 YP_001667346.1 CDS PputGB1_1102 NC_010322.1 1252387 1253091 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN1256 transcriptional regulator, TetR family; TetR family transcriptional regulator 1252387..1253091 Pseudomonas putida GB-1 5868861 YP_001667347.1 CDS PputGB1_1103 NC_010322.1 1253121 1253669 D KEGG: pen:PSEEN1257 lipoprotein; lipoprotein 1253121..1253669 Pseudomonas putida GB-1 5868862 YP_001667348.1 CDS PputGB1_1104 NC_010322.1 1253721 1254998 D PFAM: protein of unknown function DUF1704; KEGG: pen:PSEEN1258 hypothetical protein; hypothetical protein 1253721..1254998 Pseudomonas putida GB-1 5868863 YP_001667349.1 CDS PputGB1_1105 NC_010322.1 1254970 1255893 D KEGG: pen:PSEEN1259 lipoprotein; lipoprotein 1254970..1255893 Pseudomonas putida GB-1 5868864 YP_001667350.1 CDS PputGB1_1106 NC_010322.1 1255890 1256216 D KEGG: pen:PSEEN1260 hypothetical protein; hypothetical protein 1255890..1256216 Pseudomonas putida GB-1 5868865 YP_001667351.1 CDS PputGB1_1107 NC_010322.1 1256321 1257112 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1261 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein complement(1256321..1257112) Pseudomonas putida GB-1 5868866 YP_001667352.1 CDS PputGB1_1108 NC_010322.1 1257163 1257576 R KEGG: pen:PSEEN1262 hypothetical protein; hypothetical protein complement(1257163..1257576) Pseudomonas putida GB-1 5868867 YP_001667353.1 CDS PputGB1_1109 NC_010322.1 1257851 1258195 R KEGG: pen:PSEEN1263 hypothetical protein; hypothetical protein complement(1257851..1258195) Pseudomonas putida GB-1 5868868 YP_001667354.1 CDS PputGB1_1110 NC_010322.1 1258361 1260988 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1258361..1260988 Pseudomonas putida GB-1 5868869 YP_001667355.1 CDS adk NC_010322.1 1261246 1261896 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1261246..1261896 Pseudomonas putida GB-1 5868870 YP_001667356.1 CDS PputGB1_1112 NC_010322.1 1261988 1262662 D PFAM: peptidase M22 glycoprotease; KEGG: pen:PSEEN1266 glycoprotein endopeptidase metalloprotease; peptidase M22 glycoprotease 1261988..1262662 Pseudomonas putida GB-1 5868871 YP_001667357.1 CDS PputGB1_1113 NC_010322.1 1262794 1263084 D KEGG: pen:PSEEN1267 hypothetical protein; hypothetical protein 1262794..1263084 Pseudomonas putida GB-1 5868872 YP_001667358.1 CDS PputGB1_1114 NC_010322.1 1263088 1263957 D PFAM: protein of unknown function DUF72; KEGG: pen:PSEEN1268 hypothetical protein; hypothetical protein 1263088..1263957 Pseudomonas putida GB-1 5868873 YP_001667359.1 CDS PputGB1_1115 NC_010322.1 1263986 1264816 D KEGG: pen:PSEEN1269 carboxyvinyl-carboxyphosphonate phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase 1263986..1264816 Pseudomonas putida GB-1 5868874 YP_001667360.1 CDS PputGB1_1116 NC_010322.1 1264816 1265505 D PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein; extensin family protein 1264816..1265505 Pseudomonas putida GB-1 5868875 YP_001667361.1 CDS PputGB1_1117 NC_010322.1 1265508 1266128 R KEGG: pen:PSEEN1270 hypothetical protein; hypothetical protein complement(1265508..1266128) Pseudomonas putida GB-1 5868876 YP_001667362.1 CDS PputGB1_1118 NC_010322.1 1266232 1267008 D PFAM: protein of unknown function DUF548; KEGG: pen:PSEEN1271 hypothetical protein; hypothetical protein 1266232..1267008 Pseudomonas putida GB-1 5868877 YP_001667363.1 CDS PputGB1_1119 NC_010322.1 1267241 1267882 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN4243 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1267241..1267882) Pseudomonas putida GB-1 5868878 YP_001667364.1 CDS PputGB1_1120 NC_010322.1 1268120 1269505 D KEGG: pap:PSPA7_2933 hypothetical protein; hypothetical protein 1268120..1269505 Pseudomonas putida GB-1 5868879 YP_001667365.1 CDS PputGB1_1121 NC_010322.1 1269542 1270783 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pau:PA14_34580 putative flavin reductase dependent enzyme; type 2 acyl-CoA dehydrogenase complement(1269542..1270783) Pseudomonas putida GB-1 5868880 YP_001667366.1 CDS PputGB1_1122 NC_010322.1 1271067 1272167 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 1271067..1272167 Pseudomonas putida GB-1 5868881 YP_001667367.1 CDS PputGB1_1123 NC_010322.1 1272174 1275239 D PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4240 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 1272174..1275239 Pseudomonas putida GB-1 5868882 YP_001667368.1 CDS PputGB1_1124 NC_010322.1 1275276 1275965 R KEGG: pen:PSEEN4239 hypothetical protein; hypothetical protein complement(1275276..1275965) Pseudomonas putida GB-1 5868883 YP_001667369.1 CDS PputGB1_1125 NC_010322.1 1275999 1276397 R KEGG: pen:PSEEN4238 lipoprotein; lipoprotein complement(1275999..1276397) Pseudomonas putida GB-1 5868884 YP_001667370.1 CDS PputGB1_1126 NC_010322.1 1276474 1278960 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(1276474..1278960) Pseudomonas putida GB-1 5868885 YP_001667371.1 CDS PputGB1_1127 NC_010322.1 1279194 1279403 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4235 cold shock protein CspE-like; cold-shock DNA-binding domain-containing protein 1279194..1279403 Pseudomonas putida GB-1 5868886 YP_001667372.1 CDS PputGB1_1128 NC_010322.1 1279468 1279845 R KEGG: pen:PSEEN4234 hypothetical protein; hypothetical protein complement(1279468..1279845) Pseudomonas putida GB-1 5868887 YP_001667373.1 CDS PputGB1_1129 NC_010322.1 1279864 1280676 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4233 23S rRNA m1G745 methyltransferase RrmA; rRNA (guanine-N(1)-)-methyltransferase complement(1279864..1280676) Pseudomonas putida GB-1 5868888 YP_001667374.1 CDS PputGB1_1130 NC_010322.1 1280676 1281827 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1280676..1281827) Pseudomonas putida GB-1 5868889 YP_001667375.1 CDS PputGB1_1131 NC_010322.1 1282034 1282681 D KEGG: bch:Bcen2424_1753 protein of unknown function DUF1120; hypothetical protein 1282034..1282681 Pseudomonas putida GB-1 5868890 YP_001667376.1 CDS PputGB1_1132 NC_010322.1 1282788 1283501 D PFAM: pili assembly chaperone; KEGG: spe:Spro_2407 pili assembly chaperone; pili assembly chaperone 1282788..1283501 Pseudomonas putida GB-1 5868891 YP_001667377.1 CDS PputGB1_1133 NC_010322.1 1283546 1285897 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: bam:Bamb_1679 fimbrial biogenesis outer membrane usher protein; fimbrial biogenesis outer membrane usher protein 1283546..1285897 Pseudomonas putida GB-1 5868892 YP_001667378.1 CDS PputGB1_1134 NC_010322.1 1285863 1287011 D KEGG: bcn:Bcen_6326 protein of unknown function DUF1120; hypothetical protein 1285863..1287011 Pseudomonas putida GB-1 5868893 YP_001667379.1 CDS PputGB1_1135 NC_010322.1 1287042 1289630 R PFAM: glycoside hydrolase family 17; glycosyl transferase family 2; KEGG: pen:PSEEN4231 glycosyl transferase; glycosyl transferase family protein complement(1287042..1289630) Pseudomonas putida GB-1 5868894 YP_001667380.1 CDS PputGB1_1136 NC_010322.1 1289750 1290559 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pen:PSEEN4230 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 1289750..1290559 Pseudomonas putida GB-1 5868895 YP_001667381.1 CDS PputGB1_1137 NC_010322.1 1290722 1291132 R PFAM: Fe-S metabolism associated SufE; KEGG: pen:PSEEN4229 hypothetical protein; Fe-S metabolism associated SufE complement(1290722..1291132) Pseudomonas putida GB-1 5868896 YP_001667382.1 CDS PputGB1_1138 NC_010322.1 1291129 1292334 R PFAM: aminotransferase class V; KEGG: pen:PSEEN4228 cysteine sulfinate desulfinase; class V aminotransferase complement(1291129..1292334) Pseudomonas putida GB-1 5868897 YP_001667383.1 CDS PputGB1_1139 NC_010322.1 1292416 1293450 R KEGG: pen:PSEEN4227 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1292416..1293450) Pseudomonas putida GB-1 5868898 YP_001667384.1 CDS PputGB1_1140 NC_010322.1 1293482 1293838 R PFAM: arsenate reductase and related; KEGG: pen:PSEEN4226 hypothetical protein; arsenate reductase-like protein complement(1293482..1293838) Pseudomonas putida GB-1 5868899 YP_001667385.1 CDS PputGB1_1141 NC_010322.1 1294138 1295784 D TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4225 sodium:hydrogen antiporter (CPA1 family); Na+/H+ antiporter 1294138..1295784 Pseudomonas putida GB-1 5868900 YP_001667386.1 CDS PputGB1_1142 NC_010322.1 1295841 1296071 R PFAM: Calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein complement(1295841..1296071) Pseudomonas putida GB-1 5868901 YP_001667387.1 CDS PputGB1_1143 NC_010322.1 1296213 1297412 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(1296213..1297412) Pseudomonas putida GB-1 5868902 YP_001667388.1 CDS glnD NC_010322.1 1297443 1300145 R Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1297443..1300145) Pseudomonas putida GB-1 5868903 YP_001667389.1 CDS PputGB1_1145 NC_010322.1 1300188 1300970 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1300188..1300970) Pseudomonas putida GB-1 5868904 YP_001667390.1 CDS rpsB NC_010322.1 1301316 1302053 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1301316..1302053 Pseudomonas putida GB-1 5868906 YP_001667391.1 CDS tsf NC_010322.1 1302239 1303102 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1302239..1303102 Pseudomonas putida GB-1 5868907 YP_001667392.1 CDS pyrH NC_010322.1 1303283 1304026 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1303283..1304026 Pseudomonas putida GB-1 5868908 YP_001667393.1 CDS frr NC_010322.1 1304023 1304580 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1304023..1304580 Pseudomonas putida GB-1 5868909 YP_001667394.1 CDS PputGB1_1150 NC_010322.1 1304596 1305351 D KEGG: pen:PSEEN4216 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1304596..1305351 Pseudomonas putida GB-1 5868910 YP_001667395.1 CDS PputGB1_1151 NC_010322.1 1305351 1306166 D PFAM: phosphatidate cytidylyltransferase; KEGG: pen:PSEEN4215 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1305351..1306166 Pseudomonas putida GB-1 5868911 YP_001667396.1 CDS PputGB1_1152 NC_010322.1 1306163 1307353 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1306163..1307353 Pseudomonas putida GB-1 5868912 YP_001667397.1 CDS PputGB1_1153 NC_010322.1 1307425 1308777 D TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: pen:PSEEN4213 membrane-associated Zn-dependent proteases 1; membrane-associated zinc metalloprotease 1307425..1308777 Pseudomonas putida GB-1 5868913 YP_001667398.1 CDS PputGB1_1154 NC_010322.1 1308852 1311215 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN4212 outer membrane protein, bacterial surface antigen family; outer membrane protein assembly complex, YaeT protein 1308852..1311215 Pseudomonas putida GB-1 5868914 YP_001667399.1 CDS PputGB1_1155 NC_010322.1 1311260 1311763 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: pen:PSEEN4211 outer membrane protein OmpH-like; outer membrane chaperone Skp 1311260..1311763 Pseudomonas putida GB-1 5868915 YP_001667400.1 CDS lpxD NC_010322.1 1311765 1312820 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1311765..1312820 Pseudomonas putida GB-1 5868916 YP_001667401.1 CDS fabZ NC_010322.1 1312935 1313375 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1312935..1313375 Pseudomonas putida GB-1 5868917 YP_001667402.1 CDS PputGB1_1158 NC_010322.1 1313372 1314148 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1313372..1314148 Pseudomonas putida GB-1 5868918 YP_001667403.1 CDS lpxB NC_010322.1 1314150 1315277 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1314150..1315277 Pseudomonas putida GB-1 5868919 YP_001667404.1 CDS rnhB NC_010322.1 1315279 1315902 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1315279..1315902 Pseudomonas putida GB-1 5868920 YP_001667405.1 CDS dnaE NC_010322.1 1316081 1319605 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1316081..1319605 Pseudomonas putida GB-1 5868921 YP_001667406.1 CDS PputGB1_1162 NC_010322.1 1319707 1320660 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1319707..1320660 Pseudomonas putida GB-1 5868922 YP_001667407.1 CDS PputGB1_1163 NC_010322.1 1320802 1322085 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: pen:PSEEN4203 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 1320802..1322085 Pseudomonas putida GB-1 5868923 YP_001667408.1 CDS pyrG NC_010322.1 1322355 1323983 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1322355..1323983 Pseudomonas putida GB-1 5868924 YP_001667409.1 CDS PputGB1_1165 NC_010322.1 1323987 1324832 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1323987..1324832 Pseudomonas putida GB-1 5868925 YP_001667410.1 CDS eno NC_010322.1 1324987 1326276 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1324987..1326276 Pseudomonas putida GB-1 5868926 YP_001667411.1 CDS PputGB1_1167 NC_010322.1 1326443 1326724 D PFAM: Septum formation initiator; KEGG: pen:PSEEN4199 cell division protein FtsB-like; septum formation initiator 1326443..1326724 Pseudomonas putida GB-1 5868927 YP_001667412.1 CDS ispD NC_010322.1 1326721 1327428 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1326721..1327428 Pseudomonas putida GB-1 5868928 YP_001667413.1 CDS PputGB1_1169 NC_010322.1 1327498 1328394 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4197 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1327498..1328394) Pseudomonas putida GB-1 5868929 YP_001667414.1 CDS PputGB1_1170 NC_010322.1 1328502 1329614 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN4196 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 1328502..1329614 Pseudomonas putida GB-1 5868930 YP_001667415.1 CDS PputGB1_1171 NC_010322.1 1329623 1330477 D KEGG: pen:PSEEN4195 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 1329623..1330477 Pseudomonas putida GB-1 5868931 YP_001667416.1 CDS ispF NC_010322.1 1330554 1331027 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 1330554..1331027 Pseudomonas putida GB-1 5868932 YP_001667417.1 CDS truD NC_010322.1 1331024 1332082 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1331024..1332082 Pseudomonas putida GB-1 5868933 YP_001667418.1 CDS surE NC_010322.1 1332070 1332819 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1332070..1332819 Pseudomonas putida GB-1 5868934 YP_001667419.1 CDS pcm NC_010322.1 1332819 1333493 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1332819..1333493 Pseudomonas putida GB-1 5868935 YP_001667420.1 CDS PputGB1_1176 NC_010322.1 1333723 1334580 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pen:PSEEN4190 peptidase M23B; peptidase M23B 1333723..1334580 Pseudomonas putida GB-1 5868936 YP_001667421.1 CDS PputGB1_1177 NC_010322.1 1334689 1335696 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1334689..1335696 Pseudomonas putida GB-1 5868937 YP_001667422.1 CDS PputGB1_1178 NC_010322.1 1336231 1336554 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN4188 ferredoxin; 4Fe-4S ferredoxin complement(1336231..1336554) Pseudomonas putida GB-1 5868938 YP_001667423.1 CDS PputGB1_1179 NC_010322.1 1336695 1339337 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1336695..1339337) Pseudomonas putida GB-1 5868939 YP_001667424.1 CDS PputGB1_1180 NC_010322.1 1339482 1340501 D hypothetical protein 1339482..1340501 Pseudomonas putida GB-1 5868940 YP_001667425.1 CDS PputGB1_1181 NC_010322.1 1341043 1342296 R PFAM: integrase family protein; KEGG: esa:ESA_01608 hypothetical protein; integrase family protein complement(1341043..1342296) Pseudomonas putida GB-1 5868941 YP_001667426.1 CDS PputGB1_1182 NC_010322.1 1342266 1342460 R KEGG: bbr:BB3542 putative phage excisionase; putative phage excisionase complement(1342266..1342460) Pseudomonas putida GB-1 5868942 YP_001667427.1 CDS PputGB1_1183 NC_010322.1 1342457 1343071 R KEGG: rsq:Rsph17025_1730 hypothetical protein; hypothetical protein complement(1342457..1343071) Pseudomonas putida GB-1 5868943 YP_001667428.1 CDS PputGB1_1184 NC_010322.1 1343446 1343646 R hypothetical protein complement(1343446..1343646) Pseudomonas putida GB-1 5868944 YP_001667429.1 CDS PputGB1_1185 NC_010322.1 1343643 1345322 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(1343643..1345322) Pseudomonas putida GB-1 5868945 YP_001667430.1 CDS PputGB1_1186 NC_010322.1 1345570 1346067 R hypothetical protein complement(1345570..1346067) Pseudomonas putida GB-1 5868946 YP_001667431.1 CDS PputGB1_1187 NC_010322.1 1346151 1346399 R KEGG: psb:Psyr_4605 transcriptional regulator PrtN, putative; transcriptional regulator PrtN complement(1346151..1346399) Pseudomonas putida GB-1 5868947 YP_001667432.1 CDS PputGB1_1188 NC_010322.1 1347207 1347911 R PFAM: peptidase S24 and S26 domain protein; KEGG: bvi:Bcep1808_1159 putative phage repressor; putative phage repressor complement(1347207..1347911) Pseudomonas putida GB-1 5868948 YP_001667433.1 CDS PputGB1_1189 NC_010322.1 1348009 1348233 D KEGG: net:Neut_1483 hypothetical protein; hypothetical protein 1348009..1348233 Pseudomonas putida GB-1 5868949 YP_001667434.1 CDS PputGB1_1190 NC_010322.1 1348363 1348851 D KEGG: pmy:Pmen_3981 hypothetical protein; hypothetical protein 1348363..1348851 Pseudomonas putida GB-1 5868950 YP_001667435.1 CDS PputGB1_1191 NC_010322.1 1349044 1351806 D PFAM: Bifunctional DNA primase/polymerase; KEGG: hch:HCH_02881 hypothetical protein; bifunctional DNA primase/polymerase 1349044..1351806 Pseudomonas putida GB-1 5868951 YP_001667436.1 CDS PputGB1_1192 NC_010322.1 1352131 1352682 D KEGG: psb:Psyr_4602 hypothetical protein; hypothetical protein 1352131..1352682 Pseudomonas putida GB-1 5868952 YP_001667437.1 CDS PputGB1_1193 NC_010322.1 1352887 1353234 D KEGG: pen:PSEEN4184 pyocin R2_PP, holin; pyocin R2_PP, holin 1352887..1353234 Pseudomonas putida GB-1 5868953 YP_001667438.1 CDS PputGB1_1194 NC_010322.1 1353395 1353976 D KEGG: pfl:PFL_1992 hypothetical protein; hypothetical protein 1353395..1353976 Pseudomonas putida GB-1 5868954 YP_001667439.1 CDS PputGB1_1195 NC_010322.1 1353981 1356023 D PFAM: terminase GpA; KEGG: pst:PSPTO_3412 terminase, large subunit; terminase GpA 1353981..1356023 Pseudomonas putida GB-1 5868955 YP_001667440.1 CDS PputGB1_1196 NC_010322.1 1356025 1356231 D KEGG: pst:PSPTO_3411 hypothetical protein; hypothetical protein 1356025..1356231 Pseudomonas putida GB-1 5868956 YP_001667441.1 CDS PputGB1_1197 NC_010322.1 1356243 1357709 D TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; KEGG: pst:PSPTO_3410 portal protein; lambda family phage portal protein 1356243..1357709 Pseudomonas putida GB-1 5868957 YP_001667442.1 CDS PputGB1_1198 NC_010322.1 1357706 1358857 D PFAM: peptidase S14 ClpP; KEGG: pst:PSPTO_3409 ATP-dependent Clp protease, proteolytic subunit ClpP; peptidase S14 ClpP 1357706..1358857 Pseudomonas putida GB-1 5868958 YP_001667443.1 CDS PputGB1_1199 NC_010322.1 1358854 1359201 D KEGG: pfl:PFL_1997 hypothetical protein; hypothetical protein 1358854..1359201 Pseudomonas putida GB-1 5868959 YP_001667444.1 CDS PputGB1_1200 NC_010322.1 1359263 1360258 D KEGG: pst:PSPTO_3407 hypothetical protein; hypothetical protein 1359263..1360258 Pseudomonas putida GB-1 5868960 YP_001667445.1 CDS PputGB1_1201 NC_010322.1 1360261 1360575 D KEGG: pfl:PFL_1999 hypothetical protein; hypothetical protein 1360261..1360575 Pseudomonas putida GB-1 5868961 YP_001667446.1 CDS PputGB1_1202 NC_010322.1 1360572 1361234 D KEGG: pfl:PFL_2000 hypothetical protein; hypothetical protein 1360572..1361234 Pseudomonas putida GB-1 5868962 YP_001667447.1 CDS PputGB1_1203 NC_010322.1 1361227 1361757 D KEGG: pst:PSPTO_3404 hypothetical protein; hypothetical protein 1361227..1361757 Pseudomonas putida GB-1 5868963 YP_001667448.1 CDS PputGB1_1204 NC_010322.1 1361754 1362335 D TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: pen:PSEEN4163 pyocin R2_PP, tail spike protein; phage baseplate assembly protein V 1361754..1362335 Pseudomonas putida GB-1 5868964 YP_001667449.1 CDS PputGB1_1205 NC_010322.1 1362378 1362659 D hypothetical protein 1362378..1362659 Pseudomonas putida GB-1 5868965 YP_001667450.1 CDS PputGB1_1206 NC_010322.1 1362662 1362988 D PFAM: GPW/gp25 family protein; KEGG: pen:PSEEN4162 pyocin R2_PP, baseplate protein; GPW/gp25 family protein 1362662..1362988 Pseudomonas putida GB-1 5868966 YP_001667451.1 CDS PputGB1_1207 NC_010322.1 1362985 1363965 D PFAM: Baseplate J family protein; KEGG: pap:PSPA7_0762 hypothetical protein; baseplate J family protein 1362985..1363965 Pseudomonas putida GB-1 5868967 YP_001667452.1 CDS PputGB1_1208 NC_010322.1 1363962 1364684 D TIGRFAM: phage tail protein I; PFAM: tail protein I; KEGG: cvi:CV_0423 probable phage tail protein; phage tail protein I 1363962..1364684 Pseudomonas putida GB-1 5868968 YP_001667453.1 CDS PputGB1_1209 NC_010322.1 1364681 1365367 D KEGG: cvi:CV_2114 probable pyocin R2_PP, tail fiber protein; putative pyocin R2_PP, tail fiber protein 1364681..1365367 Pseudomonas putida GB-1 5868969 YP_001667454.1 CDS PputGB1_1210 NC_010322.1 1365370 1366101 D hypothetical protein 1365370..1366101 Pseudomonas putida GB-1 5868970 YP_001667455.1 CDS PputGB1_1211 NC_010322.1 1366109 1366564 D KEGG: rso:RSc1920 putative tail fiber assembly-like protein; hypothetical protein 1366109..1366564 Pseudomonas putida GB-1 5868971 YP_001667456.1 CDS PputGB1_1212 NC_010322.1 1366657 1367823 D PFAM: tail sheath protein; KEGG: pen:PSEEN4155 pyocin R2_PP, tail sheath protein gpFI; tail sheath protein 1366657..1367823 Pseudomonas putida GB-1 5868972 YP_001667457.1 CDS PputGB1_1213 NC_010322.1 1367836 1368345 D TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pen:PSEEN4154 pyocin R2_PP, tail tube protein GpFII; phage major tail tube protein 1367836..1368345 Pseudomonas putida GB-1 5868973 YP_001667458.1 CDS PputGB1_1214 NC_010322.1 1368396 1368692 D KEGG: pen:PSEEN4153 hypothetical protein; hypothetical protein 1368396..1368692 Pseudomonas putida GB-1 5868974 YP_001667459.1 CDS PputGB1_1215 NC_010322.1 1368824 1372768 D TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: pst:PSPTO_3393 tail tape meausure protein; TP901 family phage tail tape measure protein 1368824..1372768 Pseudomonas putida GB-1 5868975 YP_001667460.1 CDS PputGB1_1216 NC_010322.1 1372778 1373623 D PFAM: P2 GpU family protein; KEGG: pfl:PFL_2014 pyocin R2_PP, tail formation protein; P2 GpU family protein 1372778..1373623 Pseudomonas putida GB-1 5868976 YP_001667461.1 CDS PputGB1_1217 NC_010322.1 1373598 1373804 D PFAM: tail X family protein; KEGG: psp:PSPPH_1880 prophage PSPPH02, tail protein X; tail X family protein 1373598..1373804 Pseudomonas putida GB-1 5868977 YP_001667462.1 CDS PputGB1_1218 NC_010322.1 1373868 1374911 D PFAM: late control D family protein; KEGG: pfl:PFL_2017 tail protein D; late control D family protein 1373868..1374911 Pseudomonas putida GB-1 5868978 YP_001667463.1 CDS PputGB1_1219 NC_010322.1 1374949 1375518 D PFAM: glycoside hydrolase family 19; KEGG: pfl:PFL_2018 pyocin R2_PP, lytic enzyme; glycoside hydrolase 1374949..1375518 Pseudomonas putida GB-1 5868979 YP_001667464.1 CDS PputGB1_1220 NC_010322.1 1375518 1376072 D KEGG: pfl:PFL_2019 phage protein, putative; phage protein 1375518..1376072 Pseudomonas putida GB-1 5868980 YP_001667465.1 CDS PputGB1_1221 NC_010322.1 1376224 1377021 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: psp:PSPPH_1883 prophage PSPPH02, putative adenine modification methytransferase; D12 class N6 adenine-specific DNA methyltransferase 1376224..1377021 Pseudomonas putida GB-1 5868981 YP_001667466.1 CDS PputGB1_1222 NC_010322.1 1377084 1377362 R KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein complement(1377084..1377362) Pseudomonas putida GB-1 5868982 YP_001667467.1 CDS PputGB1_1223 NC_010322.1 1377564 1377854 D KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 1377564..1377854 Pseudomonas putida GB-1 5868983 YP_001667468.1 CDS PputGB1_1225 NC_010322.1 1378683 1378889 R KEGG: pen:PSEEN1776 hypothetical protein; hypothetical protein complement(1378683..1378889) Pseudomonas putida GB-1 5868985 YP_001667469.1 CDS PputGB1_1226 NC_010322.1 1379173 1379460 D hypothetical protein 1379173..1379460 Pseudomonas putida GB-1 5868986 YP_001667470.1 CDS PputGB1_1227 NC_010322.1 1379466 1379780 D hypothetical protein 1379466..1379780 Pseudomonas putida GB-1 5868987 YP_001667471.1 CDS PputGB1_1228 NC_010322.1 1379767 1380024 D hypothetical protein 1379767..1380024 Pseudomonas putida GB-1 5868988 YP_001667472.1 CDS PputGB1_1229 NC_010322.1 1380985 1382043 D KEGG: pfo:Pfl_1691 hypothetical protein; hypothetical protein 1380985..1382043 Pseudomonas putida GB-1 5868989 YP_001667473.1 CDS PputGB1_1230 NC_010322.1 1382108 1382590 D PFAM: CinA domain protein; KEGG: pen:PSEEN4129 hypothetical protein; CinA domain-containing protein 1382108..1382590 Pseudomonas putida GB-1 5868990 YP_001667474.1 CDS recA NC_010322.1 1382694 1383761 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1382694..1383761 Pseudomonas putida GB-1 5868991 YP_001667475.1 CDS recX NC_010322.1 1383782 1384252 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1383782..1384252 Pseudomonas putida GB-1 5868992 YP_001667476.1 CDS PputGB1_1233 NC_010322.1 1384302 1385423 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4126 hypothetical protein; hypothetical protein complement(1384302..1385423) Pseudomonas putida GB-1 5868993 YP_001667477.1 CDS PputGB1_1234 NC_010322.1 1385584 1385793 D KEGG: pen:PSEEN4125 hypothetical protein; hypothetical protein 1385584..1385793 Pseudomonas putida GB-1 5868994 YP_001667478.1 CDS PputGB1_1235 NC_010322.1 1385809 1386228 R KEGG: pen:PSEEN4124 hypothetical protein; hypothetical protein complement(1385809..1386228) Pseudomonas putida GB-1 5868995 YP_001667479.1 CDS PputGB1_1236 NC_010322.1 1386447 1387157 D PFAM: DTW domain containing protein; KEGG: pen:PSEEN4123 hypothetical protein; DTW domain-containing protein 1386447..1387157 Pseudomonas putida GB-1 5868996 YP_001667480.1 CDS PputGB1_1237 NC_010322.1 1387337 1387987 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4122 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1387337..1387987 Pseudomonas putida GB-1 5868997 YP_001667481.1 CDS PputGB1_1238 NC_010322.1 1388061 1388426 D PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase 1388061..1388426 Pseudomonas putida GB-1 5868998 YP_001667482.1 CDS PputGB1_1239 NC_010322.1 1388423 1389349 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4120 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1388423..1389349) Pseudomonas putida GB-1 5868999 YP_001667483.1 CDS PputGB1_1240 NC_010322.1 1389468 1390247 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4119 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 1389468..1390247 Pseudomonas putida GB-1 5869000 YP_001667484.1 CDS PputGB1_1241 NC_010322.1 1390335 1390829 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: pen:PSEEN1348 metallopeptidase, SprT family; hypothetical protein complement(1390335..1390829) Pseudomonas putida GB-1 5869001 YP_001667485.1 CDS PputGB1_1242 NC_010322.1 1390961 1391560 R PFAM: protein of unknown function DUF1282; KEGG: pen:PSEEN1349 hypothetical protein; hypothetical protein complement(1390961..1391560) Pseudomonas putida GB-1 5869002 YP_001667486.1 CDS PputGB1_1243 NC_010322.1 1391823 1392647 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1391823..1392647 Pseudomonas putida GB-1 5869003 YP_001667487.1 CDS PputGB1_1244 NC_010322.1 1392652 1393323 D KEGG: pen:PSEEN1351 DNA-glycosylase; DNA-glycosylase 1392652..1393323 Pseudomonas putida GB-1 5869004 YP_001667488.1 CDS PputGB1_1245 NC_010322.1 1393364 1393759 R KEGG: pen:PSEEN1352 hypothetical protein; hypothetical protein complement(1393364..1393759) Pseudomonas putida GB-1 5869005 YP_001667489.1 CDS PputGB1_1246 NC_010322.1 1393770 1394375 R TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1353 tryptophan repressor binding protein WrbA; flavoprotein WrbA complement(1393770..1394375) Pseudomonas putida GB-1 5869006 YP_001667490.1 CDS PputGB1_1247 NC_010322.1 1394372 1394737 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pen:PSEEN1354 arsenate reductase; arsenate reductase complement(1394372..1394737) Pseudomonas putida GB-1 5869007 YP_001667491.1 CDS PputGB1_1248 NC_010322.1 1394811 1395275 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1355 thioredoxin; alkyl hydroperoxide reductase 1394811..1395275 Pseudomonas putida GB-1 5869008 YP_001667492.1 CDS PputGB1_1249 NC_010322.1 1395310 1395714 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN1356 hypothetical protein; hypothetical protein complement(1395310..1395714) Pseudomonas putida GB-1 5869009 YP_001667493.1 CDS PputGB1_1250 NC_010322.1 1395711 1396148 R KEGG: pen:PSEEN1357 hypothetical protein; hypothetical protein complement(1395711..1396148) Pseudomonas putida GB-1 5869010 YP_001667494.1 CDS PputGB1_1251 NC_010322.1 1396180 1397169 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN1358 D-lactate dehydrogenase, NAD-dependent; D-isomer specific 2-hydroxyacid dehydrogenase complement(1396180..1397169) Pseudomonas putida GB-1 5869011 YP_001667495.1 CDS PputGB1_1252 NC_010322.1 1397231 1399984 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pen:PSEEN1359 GacS sensor kinase protein; multi-sensor hybrid histidine kinase complement(1397231..1399984) Pseudomonas putida GB-1 5869012 YP_001667496.1 CDS PputGB1_1253 NC_010322.1 1400137 1400898 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1360 DNA-binding response regulator; two component transcriptional regulator 1400137..1400898 Pseudomonas putida GB-1 5869013 YP_001667497.1 CDS PputGB1_1254 NC_010322.1 1400902 1402275 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1361 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1400902..1402275 Pseudomonas putida GB-1 5869014 YP_001667498.1 CDS cysM NC_010322.1 1402404 1403342 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1402404..1403342 Pseudomonas putida GB-1 5869015 YP_001667499.1 CDS rumA NC_010322.1 1403343 1404701 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1403343..1404701 Pseudomonas putida GB-1 5869016 YP_001667500.1 CDS PputGB1_1257 NC_010322.1 1404798 1407038 D KEGG: pen:PSEEN1364 GTP pyrophosphokinase RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1404798..1407038 Pseudomonas putida GB-1 5869017 YP_001667501.1 CDS mazG NC_010322.1 1407101 1407934 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1407101..1407934 Pseudomonas putida GB-1 5869018 YP_001667502.1 CDS PputGB1_1259 NC_010322.1 1407961 1408500 D KEGG: pen:PSEEN1366 hypothetical protein; hypothetical protein 1407961..1408500 Pseudomonas putida GB-1 5869019 YP_001667503.1 CDS PputGB1_1260 NC_010322.1 1408547 1408729 R KEGG: pen:PSEEN1367 hypothetical protein; hypothetical protein complement(1408547..1408729) Pseudomonas putida GB-1 5869020 YP_001667504.1 CDS PputGB1_1261 NC_010322.1 1408929 1409639 R KEGG: pen:PSEEN1368 hypothetical protein; hypothetical protein complement(1408929..1409639) Pseudomonas putida GB-1 5869021 YP_001667505.1 CDS purN NC_010322.1 1409648 1410301 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1409648..1410301) Pseudomonas putida GB-1 5869022 YP_001667506.1 CDS PputGB1_1263 NC_010322.1 1410301 1411359 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1410301..1411359) Pseudomonas putida GB-1 5869023 YP_001667507.1 CDS PputGB1_1264 NC_010322.1 1411615 1412682 D KEGG: pen:PSEEN1371 hypothetical protein; hypothetical protein 1411615..1412682 Pseudomonas putida GB-1 5869024 YP_001667508.1 CDS PputGB1_1265 NC_010322.1 1412695 1413768 D PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN1372 permease; hypothetical protein 1412695..1413768 Pseudomonas putida GB-1 5869025 YP_001667509.1 CDS PputGB1_1266 NC_010322.1 1413950 1414657 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1413950..1414657 Pseudomonas putida GB-1 5869026 YP_001667510.1 CDS PputGB1_1267 NC_010322.1 1414785 1415429 D PFAM: NLP/P60 protein; KEGG: pen:PSEEN1374 hypothetical protein; NLP/P60 protein 1414785..1415429 Pseudomonas putida GB-1 5869027 YP_001667511.1 CDS PputGB1_1268 NC_010322.1 1415569 1416102 D PFAM: NLP/P60 protein; KEGG: pen:PSEEN1375 hypothetical protein; NLP/P60 protein 1415569..1416102 Pseudomonas putida GB-1 5869028 YP_001667512.1 CDS PputGB1_1269 NC_010322.1 1416278 1418824 D KEGG: pen:PSEEN1376 hypothetical protein; hypothetical protein 1416278..1418824 Pseudomonas putida GB-1 5869029 YP_001667513.1 CDS PputGB1_1270 NC_010322.1 1418836 1420200 R KEGG: pfo:Pfl_1639 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase complement(1418836..1420200) Pseudomonas putida GB-1 5869030 YP_001667514.1 CDS PputGB1_1271 NC_010322.1 1420777 1421388 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1420777..1421388 Pseudomonas putida GB-1 5869031 YP_001667515.1 CDS PputGB1_1272 NC_010322.1 1421385 1422680 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1421385..1422680 Pseudomonas putida GB-1 5869032 YP_001667516.1 CDS PputGB1_1273 NC_010322.1 1422677 1423327 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pen:PSEEN1380 nitroreductase; cobalamine biosynthesis protein; cob(II)yrinic acid a,c-diamide reductase 1422677..1423327 Pseudomonas putida GB-1 5869033 YP_001667517.1 CDS cobD NC_010322.1 1423324 1424232 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1423324..1424232 Pseudomonas putida GB-1 5869034 YP_001667518.1 CDS PputGB1_1275 NC_010322.1 1424225 1425217 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1424225..1425217 Pseudomonas putida GB-1 5869035 YP_001667519.1 CDS PputGB1_1276 NC_010322.1 1425214 1426668 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1425214..1426668 Pseudomonas putida GB-1 5869036 YP_001667520.1 CDS cobU NC_010322.1 1426670 1427191 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1426670..1427191 Pseudomonas putida GB-1 5869037 YP_001667521.1 CDS cobT NC_010322.1 1427188 1428243 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1427188..1428243 Pseudomonas putida GB-1 5869038 YP_001667522.1 CDS PputGB1_1279 NC_010322.1 1428240 1428806 D TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN1386 alpha-ribazole-5'-phosphate phosphatase CobC; alpha-ribazole phosphatase 1428240..1428806 Pseudomonas putida GB-1 5869039 YP_001667523.1 CDS cobS NC_010322.1 1428808 1429530 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1428808..1429530 Pseudomonas putida GB-1 5869040 YP_001667524.1 CDS PputGB1_1281 NC_010322.1 1429600 1430004 D PFAM: regulatory protein MarR; KEGG: pen:PSEEN1389 transcriptional regulator, MarR family; MarR family transcriptional regulator 1429600..1430004 Pseudomonas putida GB-1 5869041 YP_001667525.1 CDS PputGB1_1282 NC_010322.1 1430069 1431271 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1390 transporter; major facilitator superfamily transporter 1430069..1431271 Pseudomonas putida GB-1 5869042 YP_001667526.1 CDS PputGB1_1283 NC_010322.1 1431268 1431390 D KEGG: pen:PSEEN1391 hypothetical protein; hypothetical protein 1431268..1431390 Pseudomonas putida GB-1 5869043 YP_001667527.1 CDS PputGB1_1284 NC_010322.1 1431437 1431988 D PFAM: glutathione peroxidase; Redoxin domain protein; KEGG: pen:PSEEN1392 glutathione peroxidase; glutathione peroxidase 1431437..1431988 Pseudomonas putida GB-1 5869044 YP_001667528.1 CDS PputGB1_1285 NC_010322.1 1432217 1432477 R KEGG: pen:PSEEN1394 hypothetical protein; hypothetical protein complement(1432217..1432477) Pseudomonas putida GB-1 5869045 YP_001667529.1 CDS PputGB1_1286 NC_010322.1 1432592 1433521 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1395 transcriptional regulator, LysR family; LysR family transcriptional regulator 1432592..1433521 Pseudomonas putida GB-1 5869046 YP_001667530.1 CDS PputGB1_1287 NC_010322.1 1433564 1434829 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pen:PSEEN1396 long-chain fatty acid transporter; aromatic hydrocarbon degradation membrane protein complement(1433564..1434829) Pseudomonas putida GB-1 5869047 YP_001667531.1 CDS PputGB1_1288 NC_010322.1 1434977 1435459 R KEGG: pen:PSEEN1397 hypothetical protein; hypothetical protein complement(1434977..1435459) Pseudomonas putida GB-1 5869048 YP_001667532.1 CDS PputGB1_1289 NC_010322.1 1435709 1435933 R KEGG: pen:PSEEN1400 hypothetical protein; hypothetical protein complement(1435709..1435933) Pseudomonas putida GB-1 5869049 YP_001667533.1 CDS PputGB1_1290 NC_010322.1 1436885 1437304 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1403 hypothetical protein; Sel1 domain-containing protein 1436885..1437304 Pseudomonas putida GB-1 5869050 YP_001667534.1 CDS PputGB1_1291 NC_010322.1 1437396 1438883 D PFAM: protein of unknown function DUF195; KEGG: pen:PSEEN1404 hypothetical protein; hypothetical protein 1437396..1438883 Pseudomonas putida GB-1 5869051 YP_001667535.1 CDS PputGB1_1292 NC_010322.1 1438855 1442334 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1405 sensory box histidine kinase/response regulator hybrid; integral membrane sensor hybrid histidine kinase complement(1438855..1442334) Pseudomonas putida GB-1 5869052 YP_001667536.1 CDS PputGB1_1293 NC_010322.1 1442460 1443638 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1406 major facilitator family transporter; major facilitator superfamily transporter complement(1442460..1443638) Pseudomonas putida GB-1 5869053 YP_001667537.1 CDS PputGB1_1294 NC_010322.1 1443792 1444523 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pfo:Pfl_2799 transcriptional regulator, GntR family; GntR family transcriptional regulator 1443792..1444523 Pseudomonas putida GB-1 5869054 YP_001667538.1 CDS PputGB1_1295 NC_010322.1 1444615 1445889 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_2798 general substrate transporter; major facilitator superfamily transporter 1444615..1445889 Pseudomonas putida GB-1 5869055 YP_001667539.1 CDS PputGB1_1296 NC_010322.1 1445914 1446747 D PFAM: amidohydrolase 2; KEGG: pfo:Pfl_2797 amidohydrolase 2; amidohydrolase 2 1445914..1446747 Pseudomonas putida GB-1 5869056 YP_001667540.1 CDS PputGB1_1297 NC_010322.1 1446860 1448737 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1408 acyltransferase; phospholipid/glycerol acyltransferase 1446860..1448737 Pseudomonas putida GB-1 5869057 YP_001667541.1 CDS PputGB1_1298 NC_010322.1 1448747 1449064 R PFAM: small multidrug resistance protein; KEGG: pen:PSEEN1409 multidrug efflux pump; small multidrug resistance protein complement(1448747..1449064) Pseudomonas putida GB-1 5869058 YP_001667542.1 CDS PputGB1_1299 NC_010322.1 1449170 1450144 R PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN1410 transporter; sodium/bile acid transporter family protein; bile acid:sodium symporter complement(1449170..1450144) Pseudomonas putida GB-1 5869059 YP_001667543.1 CDS rdgC NC_010322.1 1450268 1451188 R Required for efficient pilin antigenic variation; recombination associated protein complement(1450268..1451188) Pseudomonas putida GB-1 5869060 YP_001667544.1 CDS PputGB1_1301 NC_010322.1 1451994 1452785 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pen:PSEEN1415 methionine aminopeptidase, type I Map; methionine aminopeptidase complement(1451994..1452785) Pseudomonas putida GB-1 5869065 YP_001667545.1 CDS PputGB1_1302 NC_010322.1 1453035 1457051 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1417 assimilatory nitrate reductase; molybdopterin oxidoreductase 1453035..1457051 Pseudomonas putida GB-1 5869066 YP_001667546.1 CDS PputGB1_1303 NC_010322.1 1457354 1459906 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1418 nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding; nitrite reductase (NAD(P)H) large subunit 1457354..1459906 Pseudomonas putida GB-1 5869067 YP_001667547.1 CDS PputGB1_1304 NC_010322.1 1459906 1460268 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: pen:PSEEN1419 nitrite reductase, small subunit NirD; nitrite reductase (NAD(P)H) small subunit 1459906..1460268 Pseudomonas putida GB-1 5869068 YP_001667548.1 CDS PputGB1_1305 NC_010322.1 1460309 1461241 D TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1425 pca operon transcriptional activator PcaQ; LysR family transcriptional regulator 1460309..1461241 Pseudomonas putida GB-1 5869069 YP_001667549.1 CDS PputGB1_1306 NC_010322.1 1461471 1462235 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1426 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 1461471..1462235 Pseudomonas putida GB-1 5869070 YP_001667550.1 CDS PputGB1_1307 NC_010322.1 1462524 1462964 D PFAM: protein of unknown function DUF1232; KEGG: pen:PSEEN1427 hypothetical protein; hypothetical protein 1462524..1462964 Pseudomonas putida GB-1 5869071 YP_001667551.1 CDS PputGB1_1308 NC_010322.1 1463082 1463420 D PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1428 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1463082..1463420 Pseudomonas putida GB-1 5869072 YP_001667552.1 CDS PputGB1_1309 NC_010322.1 1463417 1463785 D KEGG: pen:PSEEN1429 hypothetical protein; hypothetical protein 1463417..1463785 Pseudomonas putida GB-1 5869073 YP_001667553.1 CDS PputGB1_1310 NC_010322.1 1463815 1464735 R PFAM: EAL domain protein; KEGG: pen:PSEEN1430 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate phosphodiesterase complement(1463815..1464735) Pseudomonas putida GB-1 5869074 YP_001667554.1 CDS PputGB1_1311 NC_010322.1 1464854 1466935 R KEGG: pen:PSEEN1431 carboxy-terminal protease for penicillin-binding protein 3 Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1464854..1466935) Pseudomonas putida GB-1 5869075 YP_001667555.1 CDS PputGB1_1312 NC_010322.1 1467076 1468038 D TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1432 alcohol dehydrogenase, zinc-containing; PIG3 family NAD(P)H quinone oxidoreductase 1467076..1468038 Pseudomonas putida GB-1 5869076 YP_001667556.1 CDS PputGB1_1313 NC_010322.1 1468142 1468795 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1433 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(1468142..1468795) Pseudomonas putida GB-1 5869077 YP_001667557.1 CDS PputGB1_1314 NC_010322.1 1468810 1469799 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1434 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1468810..1469799) Pseudomonas putida GB-1 5869078 YP_001667558.1 CDS PputGB1_1315 NC_010322.1 1469801 1470595 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1435 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1469801..1470595) Pseudomonas putida GB-1 5869079 YP_001667559.1 CDS PputGB1_1316 NC_010322.1 1470585 1471424 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1436 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1470585..1471424) Pseudomonas putida GB-1 5869080 YP_001667560.1 CDS PputGB1_1317 NC_010322.1 1471421 1472227 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pen:PSEEN1437 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(1471421..1472227) Pseudomonas putida GB-1 5869081 YP_001667561.1 CDS PputGB1_1318 NC_010322.1 1472385 1473443 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1438 ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(1472385..1473443) Pseudomonas putida GB-1 5869082 YP_001667562.1 CDS PputGB1_1319 NC_010322.1 1473772 1474485 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN1439 transcriptional regulator, GntR family; GntR family transcriptional regulator 1473772..1474485 Pseudomonas putida GB-1 5869083 YP_001667563.1 CDS PputGB1_1320 NC_010322.1 1474492 1476645 R PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN1440 transporter, mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS complement(1474492..1476645) Pseudomonas putida GB-1 5869084 YP_001667564.1 CDS PputGB1_1321 NC_010322.1 1476690 1476857 R KEGG: pen:PSEEN1441 hypothetical protein; hypothetical protein complement(1476690..1476857) Pseudomonas putida GB-1 5869085 YP_001667565.1 CDS PputGB1_1322 NC_010322.1 1476972 1478261 R catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 complement(1476972..1478261) Pseudomonas putida GB-1 5869086 YP_001667566.1 CDS PputGB1_1323 NC_010322.1 1478369 1479004 R PFAM: pseudouridine synthase; KEGG: pen:PSEEN1443 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(1478369..1479004) Pseudomonas putida GB-1 5869087 YP_001667567.1 CDS minE NC_010322.1 1479154 1479408 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1479154..1479408) Pseudomonas putida GB-1 5869088 YP_001667568.1 CDS PputGB1_1325 NC_010322.1 1479412 1480224 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN1445 septum site-determining protein MinD; septum site-determining protein MinD complement(1479412..1480224) Pseudomonas putida GB-1 5869089 YP_001667569.1 CDS minC NC_010322.1 1480334 1481095 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1480334..1481095) Pseudomonas putida GB-1 5869090 YP_001667570.1 CDS PputGB1_1327 NC_010322.1 1481207 1482142 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1481207..1482142 Pseudomonas putida GB-1 5869091 YP_001667571.1 CDS PputGB1_1328 NC_010322.1 1482169 1483317 D PFAM: Patatin; KEGG: pen:PSEEN1448 hypothetical protein; patatin 1482169..1483317 Pseudomonas putida GB-1 5869092 YP_001667572.1 CDS PputGB1_1329 NC_010322.1 1483386 1484210 R PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN1449 lipoprotein VacJ-like; VacJ family lipoprotein complement(1483386..1484210) Pseudomonas putida GB-1 5869093 YP_001667573.1 CDS PputGB1_1330 NC_010322.1 1484203 1485501 R KEGG: pen:PSEEN1450 hypothetical protein; hypothetical protein complement(1484203..1485501) Pseudomonas putida GB-1 5869094 YP_001667574.1 CDS PputGB1_1331 NC_010322.1 1485692 1486069 D KEGG: pen:PSEEN1451 hypothetical protein; hypothetical protein 1485692..1486069 Pseudomonas putida GB-1 5869095 YP_001667575.1 CDS PputGB1_1332 NC_010322.1 1486191 1487759 R KEGG: pen:PSEEN1452 beta (1-6) glucans synthase; beta (1-6) glucans synthase complement(1486191..1487759) Pseudomonas putida GB-1 5869096 YP_001667576.1 CDS PputGB1_1333 NC_010322.1 1487957 1488817 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1453 glycine betaine-binding protein, ABC type; substrate-binding region of ABC-type glycine betaine transport system 1487957..1488817 Pseudomonas putida GB-1 5869097 YP_001667577.1 CDS PputGB1_1334 NC_010322.1 1489060 1489371 D PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN1454 hypothetical protein; hypothetical protein 1489060..1489371 Pseudomonas putida GB-1 5869098 YP_001667578.1 CDS actP NC_010322.1 1489368 1491032 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1489368..1491032 Pseudomonas putida GB-1 5869099 YP_001667579.1 CDS PputGB1_1336 NC_010322.1 1491108 1491260 R KEGG: pen:PSEEN1462 hypothetical protein; hypothetical protein complement(1491108..1491260) Pseudomonas putida GB-1 5869100 YP_001667580.1 CDS PputGB1_1337 NC_010322.1 1491500 1492309 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1463 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1491500..1492309 Pseudomonas putida GB-1 5869101 YP_001667581.1 CDS PputGB1_1338 NC_010322.1 1492430 1492612 D PFAM: carbon storage regulator; KEGG: pen:PSEEN1464 carbon storage regulator; carbon storage regulator CsrA 1492430..1492612 Pseudomonas putida GB-1 5869102 YP_001667582.1 CDS PputGB1_1339 NC_010322.1 1492609 1492836 R PFAM: protein of unknown function UPF0270; KEGG: pen:PSEEN1465 hypothetical protein; hypothetical protein complement(1492609..1492836) Pseudomonas putida GB-1 5869103 YP_001667583.1 CDS PputGB1_1340 NC_010322.1 1492917 1494101 R TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M20; peptidase M42 family protein; KEGG: pen:PSEEN1467 peptidase M42; peptidase M42 family hydrolase complement(1492917..1494101) Pseudomonas putida GB-1 5869104 YP_001667584.1 CDS PputGB1_1341 NC_010322.1 1494282 1496027 R KEGG: pen:PSEEN1468 acetyltransferase, GNAT family; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase; GNAT family acetyltransferase complement(1494282..1496027) Pseudomonas putida GB-1 5869105 YP_001667585.1 CDS PputGB1_1342 NC_010322.1 1496031 1497818 R KEGG: pen:PSEEN1469 asparagine synthetase AsnB; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase amidotransferase complement(1496031..1497818) Pseudomonas putida GB-1 5869106 YP_001667586.1 CDS mnmC NC_010322.1 1497962 1499926 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1497962..1499926) Pseudomonas putida GB-1 5869107 YP_001667587.1 CDS PputGB1_1344 NC_010322.1 1500063 1501556 D PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN1471 hypothetical protein; hypothetical protein 1500063..1501556 Pseudomonas putida GB-1 5869108 YP_001667588.1 CDS PputGB1_1345 NC_010322.1 1501750 1502712 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1473 hypothetical protein; hypothetical protein 1501750..1502712 Pseudomonas putida GB-1 5869109 YP_001667589.1 CDS PputGB1_1346 NC_010322.1 1502758 1504152 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1502758..1504152) Pseudomonas putida GB-1 5869110 YP_001667590.1 CDS PputGB1_1347 NC_010322.1 1504307 1504831 D KEGG: pen:PSEEN1475 hypothetical protein; hypothetical protein 1504307..1504831 Pseudomonas putida GB-1 5869111 YP_001667591.1 CDS PputGB1_1348 NC_010322.1 1504842 1505138 D PFAM: BolA family protein; KEGG: pen:PSEEN1476 transcriptional regulator, BolA superfamily; BolA family protein 1504842..1505138 Pseudomonas putida GB-1 5869112 YP_001667592.1 CDS PputGB1_1349 NC_010322.1 1505248 1506180 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN1477 hypothetical protein; hypothetical protein 1505248..1506180 Pseudomonas putida GB-1 5869113 YP_001667593.1 CDS PputGB1_1350 NC_010322.1 1506184 1506816 D PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN1478 hypothetical protein; DSBA oxidoreductase 1506184..1506816 Pseudomonas putida GB-1 5869114 YP_001667594.1 CDS PputGB1_1351 NC_010322.1 1506809 1508641 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1479 ABC transporter, ATP-binding protein; ABC transporter-like protein 1506809..1508641 Pseudomonas putida GB-1 5869115 YP_001667595.1 CDS PputGB1_1352 NC_010322.1 1508766 1511222 D KEGG: pen:PSEEN1480 sensory box protein/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1508766..1511222 Pseudomonas putida GB-1 5869116 YP_001667596.1 CDS PputGB1_1353 NC_010322.1 1511253 1512038 D KEGG: pen:PSEEN1481 hypothetical protein; hypothetical protein 1511253..1512038 Pseudomonas putida GB-1 5869117 YP_001667597.1 CDS PputGB1_1354 NC_010322.1 1512161 1512901 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1482 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(1512161..1512901) Pseudomonas putida GB-1 5869118 YP_001667598.1 CDS PputGB1_1355 NC_010322.1 1512923 1513594 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(1512923..1513594) Pseudomonas putida GB-1 5869119 YP_001667599.1 CDS PputGB1_1356 NC_010322.1 1513597 1514295 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1513597..1514295) Pseudomonas putida GB-1 5869120 YP_001667600.1 CDS mtnA NC_010322.1 1514406 1515482 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1514406..1515482 Pseudomonas putida GB-1 5869121 YP_001667601.1 CDS PputGB1_1358 NC_010322.1 1515769 1518534 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1515769..1518534 Pseudomonas putida GB-1 5869122 YP_001667602.1 CDS PputGB1_1359 NC_010322.1 1518711 1519718 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1518711..1519718 Pseudomonas putida GB-1 5869123 YP_001667603.1 CDS PputGB1_1360 NC_010322.1 1519718 1520812 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pen:PSEEN1489 bifunctional chorismate mutase/prephenate dehydratase PheA; chorismate mutase 1519718..1520812 Pseudomonas putida GB-1 5869124 YP_001667604.1 CDS PputGB1_1361 NC_010322.1 1520973 1523213 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1520973..1523213 Pseudomonas putida GB-1 5869125 YP_001667605.1 CDS cmk NC_010322.1 1523210 1523896 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1523210..1523896 Pseudomonas putida GB-1 5869126 YP_001667606.1 CDS rpsA NC_010322.1 1524021 1525697 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1524021..1525697 Pseudomonas putida GB-1 5869127 YP_001667607.1 CDS PputGB1_1364 NC_010322.1 1525866 1526318 R KEGG: pen:PSEEN3227 hypothetical protein; hypothetical protein complement(1525866..1526318) Pseudomonas putida GB-1 5869128 YP_001667608.1 CDS ihfB NC_010322.1 1526836 1527132 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1526836..1527132 Pseudomonas putida GB-1 5869129 YP_001667609.1 CDS PputGB1_1366 NC_010322.1 1527152 1527415 D KEGG: pfo:Pfl_4059 hypothetical protein; hypothetical protein 1527152..1527415 Pseudomonas putida GB-1 5869130 YP_001667610.1 CDS PputGB1_1367 NC_010322.1 1527518 1528951 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: psp:PSPPH_3659 metallo-beta-lactamase family, beta-CASP subfamily; beta-lactamase domain-containing protein 1527518..1528951 Pseudomonas putida GB-1 5869131 YP_001667611.1 CDS PputGB1_1368 NC_010322.1 1529343 1530386 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN1495 O-antigen chain length regulator protein (Wzz); lipopolysaccharide biosynthesis protein 1529343..1530386 Pseudomonas putida GB-1 5869132 YP_001667612.1 CDS PputGB1_1369 NC_010322.1 1530434 1531684 D PFAM: polysaccharide biosynthesis protein; KEGG: gka:GK3299 O-antigen transporter; polysaccharide biosynthesis protein 1530434..1531684 Pseudomonas putida GB-1 5869133 YP_001667613.1 CDS PputGB1_1370 NC_010322.1 1531732 1532733 D KEGG: cpy:Cphy_3500 hemolytic protein HlpA-like protein; hemolytic protein HlpA-like protein 1531732..1532733 Pseudomonas putida GB-1 5869134 YP_001667614.1 CDS PputGB1_1371 NC_010322.1 1532737 1533762 D KEGG: fps:FP1292 hypothetical protein; hypothetical protein 1532737..1533762 Pseudomonas putida GB-1 5869135 YP_001667615.1 CDS PputGB1_1372 NC_010322.1 1533833 1535041 D PFAM: glycosyl transferase group 1; KEGG: cpy:Cphy_3501 glycosyl transferase group 1; glycosyl transferase group 1 protein 1533833..1535041 Pseudomonas putida GB-1 5869136 YP_001667616.1 CDS PputGB1_1373 NC_010322.1 1535034 1536068 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pen:PSEEN1500 polysaccharide biosynthesis protein; O-antigen biosynthesis protein; polysaccharide biosynthesis protein CapD 1535034..1536068 Pseudomonas putida GB-1 5869137 YP_001667617.1 CDS PputGB1_1374 NC_010322.1 1536073 1537191 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1501 nucleoside-diphosphate-sugar epimerase WbjC; NAD-dependent epimerase/dehydratase 1536073..1537191 Pseudomonas putida GB-1 5869138 YP_001667618.1 CDS PputGB1_1375 NC_010322.1 1537214 1538344 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN1502 UDP-N-acetylglucosamine 2-epimerase Wbjd; UDP-N-acetylglucosamine 2-epimerase 1537214..1538344 Pseudomonas putida GB-1 5869139 YP_001667619.1 CDS PputGB1_1376 NC_010322.1 1538359 1539609 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1503 glycosyltransferase (group 1); glycosyl transferase group 1 protein 1538359..1539609 Pseudomonas putida GB-1 5869140 YP_001667620.1 CDS PputGB1_1377 NC_010322.1 1539609 1540574 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1504 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 1539609..1540574 Pseudomonas putida GB-1 5869141 YP_001667621.1 CDS PputGB1_1378 NC_010322.1 1540571 1541581 D PFAM: glycosyl transferase family 4; KEGG: pen:PSEEN1505 glycosyl transferase WbpL; glycosyl transferase family protein 1540571..1541581 Pseudomonas putida GB-1 5869142 YP_001667622.1 CDS PputGB1_1379 NC_010322.1 1541616 1543643 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN1506 dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM; polysaccharide biosynthesis protein CapD 1541616..1543643 Pseudomonas putida GB-1 5869143 YP_001667623.1 CDS PputGB1_1380 NC_010322.1 1543799 1544869 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1543799..1544869 Pseudomonas putida GB-1 5869144 YP_001667624.1 CDS PputGB1_1381 NC_010322.1 1544866 1545771 D PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nmu:Nmul_A0265 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1544866..1545771 Pseudomonas putida GB-1 5869145 YP_001667625.1 CDS PputGB1_1382 NC_010322.1 1545768 1546649 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pap:PSPA7_5902 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1545768..1546649 Pseudomonas putida GB-1 5869146 YP_001667626.1 CDS PputGB1_1383 NC_010322.1 1547273 1548235 R hypothetical protein complement(1547273..1548235) Pseudomonas putida GB-1 5869147 YP_001667627.1 CDS PputGB1_1384 NC_010322.1 1548888 1550114 R KEGG: pau:PA14_23440 putative group 1 glycosyl transferase; putative group 1 glycosyl transferase complement(1548888..1550114) Pseudomonas putida GB-1 5869148 YP_001667628.1 CDS PputGB1_1385 NC_010322.1 1550111 1551358 R PFAM: glycosyl transferase group 1; KEGG: bcz:BCZK4972 glycosyl transferase, group 1; possible lipopolysaccharide O antigen biosynthesis protein; glycosyl transferase group 1 protein complement(1550111..1551358) Pseudomonas putida GB-1 5869149 YP_001667629.1 CDS PputGB1_1386 NC_010322.1 1551346 1553109 R KEGG: pde:Pden_2408 hypothetical protein; hypothetical protein complement(1551346..1553109) Pseudomonas putida GB-1 5869150 YP_001667630.1 CDS PputGB1_1387 NC_010322.1 1553157 1553540 R hypothetical protein complement(1553157..1553540) Pseudomonas putida GB-1 5869151 YP_001667631.1 CDS PputGB1_1388 NC_010322.1 1553557 1555386 R KEGG: bcz:BCZK4968 hypothetical protein; hypothetical protein complement(1553557..1555386) Pseudomonas putida GB-1 5869152 YP_001667632.1 CDS PputGB1_1389 NC_010322.1 1555924 1562262 R PFAM: glycosyl transferase group 1; Methyltransferase type 11; Methyltransferase type 12; KEGG: bcz:BCZK4970 hypothetical and glycosyltransferase fusion protein; type 12 methyltransferase complement(1555924..1562262) Pseudomonas putida GB-1 5869153 YP_001667633.1 CDS PputGB1_1390 NC_010322.1 1562276 1563538 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: vha:VIBHAR_00690 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; nucleotide sugar dehydrogenase complement(1562276..1563538) Pseudomonas putida GB-1 5869154 YP_001667634.1 CDS PputGB1_1391 NC_010322.1 1563535 1564677 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pau:PA14_23370 putative UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(1563535..1564677) Pseudomonas putida GB-1 5869155 YP_001667635.1 CDS PputGB1_1392 NC_010322.1 1565362 1565697 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: pen:PSEEN1508 hypothetical protein; helix-hairpin-helix repeat-containing competence protein ComEA 1565362..1565697 Pseudomonas putida GB-1 5869156 YP_001667636.1 CDS PputGB1_1393 NC_010322.1 1565946 1566113 R KEGG: pen:PSEEN1509 hypothetical protein; hypothetical protein complement(1565946..1566113) Pseudomonas putida GB-1 5869157 YP_001667637.1 CDS PputGB1_1394 NC_010322.1 1566295 1566996 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1566295..1566996 Pseudomonas putida GB-1 5869158 YP_001667638.1 CDS PputGB1_1395 NC_010322.1 1567195 1568196 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1511 zinc-containing alcohol dehydrogenase; alcohol dehydrogenase complement(1567195..1568196) Pseudomonas putida GB-1 5869159 YP_001667639.1 CDS PputGB1_1396 NC_010322.1 1568374 1569135 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1512 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1568374..1569135 Pseudomonas putida GB-1 5869160 YP_001667640.1 CDS PputGB1_1397 NC_010322.1 1569297 1571237 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1517 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1569297..1571237 Pseudomonas putida GB-1 5869161 YP_001667641.1 CDS PputGB1_1398 NC_010322.1 1571351 1572541 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1518 benzoate membrane transport protein (MFS superfamily); benzoate transporter complement(1571351..1572541) Pseudomonas putida GB-1 5869162 YP_001667642.1 CDS PputGB1_1399 NC_010322.1 1572687 1573289 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1519 glutathione S-transferase; glutathione S-transferase domain-containing protein 1572687..1573289 Pseudomonas putida GB-1 5869163 YP_001667643.1 CDS PputGB1_1400 NC_010322.1 1573359 1573730 R PFAM: glutaredoxin; KEGG: pen:PSEEN1520 hypothetical protein; glutaredoxin complement(1573359..1573730) Pseudomonas putida GB-1 5869164 YP_001667644.1 CDS folE NC_010322.1 1573790 1574335 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1573790..1574335) Pseudomonas putida GB-1 5869165 YP_001667645.1 CDS PputGB1_1402 NC_010322.1 1574406 1574966 R PFAM: Smr protein/MutS2; KEGG: pen:PSEEN1522 hypothetical protein; Smr protein/MutS2 complement(1574406..1574966) Pseudomonas putida GB-1 5869166 YP_001667646.1 CDS PputGB1_1403 NC_010322.1 1575072 1575392 R KEGG: pen:PSEEN1523 hypothetical protein; hypothetical protein complement(1575072..1575392) Pseudomonas putida GB-1 5869167 YP_001667647.1 CDS PputGB1_1404 NC_010322.1 1575478 1576068 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN1524 isochorismatase; isochorismatase hydrolase complement(1575478..1576068) Pseudomonas putida GB-1 5869168 YP_001667648.1 CDS PputGB1_1405 NC_010322.1 1576248 1577156 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1576248..1577156 Pseudomonas putida GB-1 5869169 YP_001667649.1 CDS PputGB1_1406 NC_010322.1 1577307 1578089 R KEGG: pen:PSEEN1526 hypothetical protein; hypothetical protein complement(1577307..1578089) Pseudomonas putida GB-1 5869170 YP_001667650.1 CDS PputGB1_1407 NC_010322.1 1578155 1579117 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1527 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(1578155..1579117) Pseudomonas putida GB-1 5869171 YP_001667651.1 CDS PputGB1_1408 NC_010322.1 1579248 1580339 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1579248..1580339 Pseudomonas putida GB-1 5869172 YP_001667652.1 CDS PputGB1_1409 NC_010322.1 1580414 1581568 D PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1530 transporter, MFS family; major facilitator superfamily transporter 1580414..1581568 Pseudomonas putida GB-1 5869173 YP_001667653.1 CDS PputGB1_1410 NC_010322.1 1581568 1582104 D KEGG: pen:PSEEN1531 oxidase; oxidase 1581568..1582104 Pseudomonas putida GB-1 5869174 YP_001667654.1 CDS PputGB1_1411 NC_010322.1 1582166 1582438 R KEGG: pen:PSEEN1532 hypothetical protein; hypothetical protein complement(1582166..1582438) Pseudomonas putida GB-1 5869175 YP_001667655.1 CDS PputGB1_1412 NC_010322.1 1582705 1583229 D PFAM: Ankyrin; KEGG: pen:PSEEN1535 hypothetical protein; ankyrin 1582705..1583229 Pseudomonas putida GB-1 5869176 YP_001667656.1 CDS PputGB1_1413 NC_010322.1 1583290 1583820 D KEGG: pen:PSEEN1536 hypothetical protein; hypothetical protein 1583290..1583820 Pseudomonas putida GB-1 5869177 YP_001667657.1 CDS PputGB1_1414 NC_010322.1 1583970 1584908 R PFAM: zinc/iron permease; KEGG: pen:PSEEN1537 divalent heavy-metal cations transporter (ZIP family); zinc/iron permease complement(1583970..1584908) Pseudomonas putida GB-1 5869178 YP_001667658.1 CDS PputGB1_1415 NC_010322.1 1585035 1585226 D KEGG: pen:PSEEN1538 hypothetical protein; hypothetical protein 1585035..1585226 Pseudomonas putida GB-1 5869179 YP_001667659.1 CDS PputGB1_1416 NC_010322.1 1585392 1587449 D PFAM: sulfatase; KEGG: pen:PSEEN1540 membrane sulfatase; sulfatase 1585392..1587449 Pseudomonas putida GB-1 5869180 YP_001667660.1 CDS PputGB1_1417 NC_010322.1 1587574 1587810 D KEGG: pen:PSEEN1541 hypothetical protein; hypothetical protein 1587574..1587810 Pseudomonas putida GB-1 5869181 YP_001667661.1 CDS PputGB1_1418 NC_010322.1 1587987 1588319 D PFAM: protein of unknown function DUF1260; KEGG: pen:PSEEN1542 hypothetical protein; hypothetical protein 1587987..1588319 Pseudomonas putida GB-1 5869182 YP_001667662.1 CDS PputGB1_1419 NC_010322.1 1588374 1589174 R KEGG: pen:PSEEN1543 cytochrome c; cytochrome c complement(1588374..1589174) Pseudomonas putida GB-1 5869183 YP_001667663.1 CDS PputGB1_1420 NC_010322.1 1589703 1590434 D PFAM: glutamine amidotransferase class-I; KEGG: pen:PSEEN1544 glutamine amidotransferase, class I; amidotransferase 1589703..1590434 Pseudomonas putida GB-1 5869184 YP_001667664.1 CDS PputGB1_1421 NC_010322.1 1590468 1591439 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1545 magnesium/cobalt transporter, MIT family; magnesium and cobalt transport protein CorA complement(1590468..1591439) Pseudomonas putida GB-1 5869185 YP_001667665.1 CDS PputGB1_1422 NC_010322.1 1591508 1592221 R KEGG: pen:PSEEN1546 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1591508..1592221) Pseudomonas putida GB-1 5869186 YP_001667666.1 CDS PputGB1_1423 NC_010322.1 1592333 1593022 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1592333..1593022) Pseudomonas putida GB-1 5869187 YP_001667667.1 CDS PputGB1_1424 NC_010322.1 1593459 1595591 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1548 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor complement(1593459..1595591) Pseudomonas putida GB-1 5869189 YP_001667668.1 CDS PputGB1_1425 NC_010322.1 1595668 1596048 R KEGG: pen:PSEEN1549 hypothetical protein; hypothetical protein complement(1595668..1596048) Pseudomonas putida GB-1 5869190 YP_001667669.1 CDS PputGB1_1426 NC_010322.1 1596173 1597360 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1555 transport protein (MFS superfamily); major facilitator superfamily transporter complement(1596173..1597360) Pseudomonas putida GB-1 5869191 YP_001667670.1 CDS PputGB1_1427 NC_010322.1 1597466 1598350 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1556 transcriptional regulator, LysR family; LysR family transcriptional regulator 1597466..1598350 Pseudomonas putida GB-1 5869192 YP_001667671.1 CDS fabG NC_010322.1 1598391 1599140 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1598391..1599140) Pseudomonas putida GB-1 5869193 YP_001667672.1 CDS PputGB1_1429 NC_010322.1 1599259 1600197 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1558 transcriptional regulator, LysR family; LysR family transcriptional regulator 1599259..1600197 Pseudomonas putida GB-1 5869194 YP_001667673.1 CDS PputGB1_1430 NC_010322.1 1600269 1600739 R KEGG: pen:PSEEN1559 hypothetical protein; GreA/GreB family elongation factor complement(1600269..1600739) Pseudomonas putida GB-1 5869195 YP_001667674.1 CDS PputGB1_1431 NC_010322.1 1600742 1601140 R KEGG: pen:PSEEN1560 hypothetical protein; hypothetical protein complement(1600742..1601140) Pseudomonas putida GB-1 5869196 YP_001667675.1 CDS PputGB1_1432 NC_010322.1 1601270 1602403 D KEGG: pen:PSEEN1561 hypothetical protein; hypothetical protein 1601270..1602403 Pseudomonas putida GB-1 5869197 YP_001667676.1 CDS PputGB1_1433 NC_010322.1 1602452 1603021 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1602452..1603021 Pseudomonas putida GB-1 5869198 YP_001667677.1 CDS PputGB1_1434 NC_010322.1 1603079 1603507 R PFAM: OsmC family protein; KEGG: pen:PSEEN1563 organic hydroperoxide resistance protein; OsmC family protein complement(1603079..1603507) Pseudomonas putida GB-1 5869199 YP_001667678.1 CDS PputGB1_1435 NC_010322.1 1603648 1604103 R PFAM: regulatory protein MarR; KEGG: pen:PSEEN1564 transcriptional regulator (MarR family); MarR family transcriptional regulator complement(1603648..1604103) Pseudomonas putida GB-1 5869200 YP_001667679.1 CDS PputGB1_1436 NC_010322.1 1604162 1605115 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1565 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1604162..1605115) Pseudomonas putida GB-1 5869201 YP_001667680.1 CDS PputGB1_1437 NC_010322.1 1605193 1605978 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1566 hypothetical protein; hypothetical protein 1605193..1605978 Pseudomonas putida GB-1 5869202 YP_001667681.1 CDS PputGB1_1438 NC_010322.1 1606010 1606861 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1567 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1606010..1606861) Pseudomonas putida GB-1 5869203 YP_001667682.1 CDS PputGB1_1439 NC_010322.1 1606959 1607177 D PFAM: protein of unknown function DUF1127; KEGG: pen:PSEEN1568 hypothetical protein; hypothetical protein 1606959..1607177 Pseudomonas putida GB-1 5869204 YP_001667683.1 CDS PputGB1_1440 NC_010322.1 1607261 1608478 D PFAM: protein of unknown function DUF1006; KEGG: pen:PSEEN1569 hypothetical protein; hypothetical protein 1607261..1608478 Pseudomonas putida GB-1 5869205 YP_001667684.1 CDS PputGB1_1441 NC_010322.1 1608459 1609805 R KEGG: pen:PSEEN1570 phospho-2-dehydro-3-deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1608459..1609805) Pseudomonas putida GB-1 5869206 YP_001667685.1 CDS PputGB1_1442 NC_010322.1 1609922 1610677 D KEGG: pen:PSEEN1571 hypothetical protein; hypothetical protein 1609922..1610677 Pseudomonas putida GB-1 5869207 YP_001667686.1 CDS PputGB1_1443 NC_010322.1 1611143 1612825 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1572 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1611143..1612825 Pseudomonas putida GB-1 5869208 YP_001667687.1 CDS PputGB1_1444 NC_010322.1 1612911 1613678 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN1580 aromatic ring-opening dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1612911..1613678) Pseudomonas putida GB-1 5869209 YP_001667688.1 CDS PputGB1_1445 NC_010322.1 1613780 1614430 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1613780..1614430 Pseudomonas putida GB-1 5869210 YP_001667689.1 CDS PputGB1_1446 NC_010322.1 1614485 1615372 R putative metalloprotease; heat shock protein HtpX complement(1614485..1615372) Pseudomonas putida GB-1 5869211 YP_001667690.1 CDS PputGB1_1447 NC_010322.1 1615601 1616812 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1615601..1616812) Pseudomonas putida GB-1 5869212 YP_001667691.1 CDS PputGB1_1448 NC_010322.1 1616980 1617375 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1616980..1617375 Pseudomonas putida GB-1 5869213 YP_001667692.1 CDS PputGB1_1449 NC_010322.1 1617389 1617877 D PFAM: glutathione peroxidase; KEGG: pen:PSEEN1585 glutathione peroxidase; glutathione peroxidase 1617389..1617877 Pseudomonas putida GB-1 5869214 YP_001667693.1 CDS PputGB1_1450 NC_010322.1 1617867 1620224 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1586 sensor histidine kinase/response regulator hybrid; histidine kinase complement(1617867..1620224) Pseudomonas putida GB-1 5869215 YP_001667694.1 CDS PputGB1_1451 NC_010322.1 1620301 1621188 D PFAM: protein of unknown function DUF815; KEGG: pen:PSEEN1587 hypothetical protein; hypothetical protein 1620301..1621188 Pseudomonas putida GB-1 5869216 YP_001667695.1 CDS PputGB1_1452 NC_010322.1 1621189 1621671 D KEGG: pen:PSEEN1588 hypothetical protein; hypothetical protein 1621189..1621671 Pseudomonas putida GB-1 5869217 YP_001667696.1 CDS PputGB1_1453 NC_010322.1 1621830 1622597 R KEGG: pen:PSEEN1589 hypothetical protein; hypothetical protein complement(1621830..1622597) Pseudomonas putida GB-1 5869218 YP_001667697.1 CDS PputGB1_1454 NC_010322.1 1623599 1624681 R PFAM: Fimbrial protein; KEGG: pst:PSPTO_2227 fimbrial protein, putative; fimbrial protein complement(1623599..1624681) Pseudomonas putida GB-1 5869224 YP_001667698.1 CDS PputGB1_1455 NC_010322.1 1624678 1627203 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pst:PSPTO_2228 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein complement(1624678..1627203) Pseudomonas putida GB-1 5869225 YP_001667699.1 CDS PputGB1_1456 NC_010322.1 1627462 1632531 R TIGRFAM: YD repeat protein; KEGG: psb:Psyr_2040 YD repeat; YD repeat-containing protein complement(1627462..1632531) Pseudomonas putida GB-1 5869226 YP_001667700.1 CDS PputGB1_1457 NC_010322.1 1632528 1633763 R hypothetical protein complement(1632528..1633763) Pseudomonas putida GB-1 5869227 YP_001667701.1 CDS PputGB1_1460 NC_010322.1 1635954 1638941 D KEGG: psb:Psyr_2042 hypothetical protein; hypothetical protein 1635954..1638941 Pseudomonas putida GB-1 5869229 YP_001667702.1 CDS PputGB1_1461 NC_010322.1 1638966 1642904 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2044 YD repeat; YD repeat-containing protein 1638966..1642904 Pseudomonas putida GB-1 5869230 YP_001667703.1 CDS PputGB1_1462 NC_010322.1 1643342 1645120 D KEGG: psb:Psyr_2033 hypothetical protein; hypothetical protein 1643342..1645120 Pseudomonas putida GB-1 5869231 YP_001667704.1 CDS PputGB1_1463 NC_010322.1 1645268 1647469 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: psb:Psyr_2034 outer membrane autotransporter barrel; outer membrane autotransporter 1645268..1647469 Pseudomonas putida GB-1 5869232 YP_001667705.1 CDS PputGB1_1464 NC_010322.1 1647519 1648982 D KEGG: psb:Psyr_2035 hypothetical protein; hypothetical protein 1647519..1648982 Pseudomonas putida GB-1 5869233 YP_001667706.1 CDS PputGB1_1465 NC_010322.1 1648992 1649726 R PFAM: pili assembly chaperone; KEGG: pst:PSPTO_2229 chaperone protein PapD; pili assembly chaperone complement(1648992..1649726) Pseudomonas putida GB-1 5869234 YP_001667707.1 CDS PputGB1_1466 NC_010322.1 1649786 1650262 R PFAM: Fimbrial protein; KEGG: pst:PSPTO_2230 type I pilus biogensis protein FimA; fimbrial protein complement(1649786..1650262) Pseudomonas putida GB-1 5869235 YP_001667708.1 CDS PputGB1_1467 NC_010322.1 1650481 1650891 R KEGG: pen:PSEEN1593 hypothetical protein; hypothetical protein complement(1650481..1650891) Pseudomonas putida GB-1 5869236 YP_001667709.1 CDS fadE NC_010322.1 1650971 1653418 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1650971..1653418) Pseudomonas putida GB-1 5869237 YP_001667710.1 CDS PputGB1_1469 NC_010322.1 1653621 1654244 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1595 glutathione S-transferase; glutathione S-transferase domain-containing protein 1653621..1654244 Pseudomonas putida GB-1 5869238 YP_001667711.1 CDS PputGB1_1470 NC_010322.1 1654378 1655310 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1596 ABC transporter, ATP-binding protein; ABC transporter-like protein 1654378..1655310 Pseudomonas putida GB-1 5869239 YP_001667712.1 CDS PputGB1_1471 NC_010322.1 1655307 1656086 D PFAM: ABC-2 type transporter; KEGG: pen:PSEEN1597 ABC transporter, permease protein; ABC transporter 1655307..1656086 Pseudomonas putida GB-1 5869240 YP_001667713.1 CDS PputGB1_1472 NC_010322.1 1655970 1656608 R KEGG: pen:PSEEN1598 hypothetical protein; hypothetical protein complement(1655970..1656608) Pseudomonas putida GB-1 5869241 YP_001667714.1 CDS PputGB1_1473 NC_010322.1 1656751 1658967 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pfo:Pfl_4178 DNA internalization-like competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1656751..1658967 Pseudomonas putida GB-1 5869242 YP_001667715.1 CDS PputGB1_1474 NC_010322.1 1658997 1659671 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN1601 transporter, MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1658997..1659671 Pseudomonas putida GB-1 5869243 YP_001667716.1 CDS PputGB1_1475 NC_010322.1 1659668 1660102 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN1602 biopolymer transport protein ExbD/TolR family; biopolymer transport protein ExbD/TolR 1659668..1660102 Pseudomonas putida GB-1 5869244 YP_001667717.1 CDS lpxK NC_010322.1 1660102 1661103 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1660102..1661103 Pseudomonas putida GB-1 5869245 YP_001667718.1 CDS PputGB1_1477 NC_010322.1 1661148 1661333 D PFAM: protein of unknown function DUF343; KEGG: pen:PSEEN1604 hypothetical protein; hypothetical protein 1661148..1661333 Pseudomonas putida GB-1 5869246 YP_001667719.1 CDS PputGB1_1478 NC_010322.1 1661330 1662094 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1661330..1662094 Pseudomonas putida GB-1 5869247 YP_001667720.1 CDS PputGB1_1479 NC_010322.1 1662094 1662558 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN1606 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1662094..1662558 Pseudomonas putida GB-1 5869248 YP_001667721.1 CDS murB NC_010322.1 1662555 1663574 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1662555..1663574 Pseudomonas putida GB-1 5869249 YP_001667722.1 CDS PputGB1_1481 NC_010322.1 1663680 1666940 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1608 ribonuclease E Rne; ribonuclease complement(1663680..1666940) Pseudomonas putida GB-1 5869250 YP_001667723.1 CDS PputGB1_1482 NC_010322.1 1667692 1668693 D KEGG: pen:PSEEN1609 23S rRNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1667692..1668693 Pseudomonas putida GB-1 5869251 YP_001667724.1 CDS PputGB1_1483 NC_010322.1 1668697 1669371 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1610 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1668697..1669371 Pseudomonas putida GB-1 5869252 YP_001667725.1 CDS PputGB1_1484 NC_010322.1 1669378 1670367 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pen:PSEEN1611 peptidase SppA; signal peptide peptidase SppA, 36K type 1669378..1670367 Pseudomonas putida GB-1 5869253 YP_001667726.1 CDS PputGB1_1485 NC_010322.1 1670412 1670990 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1670412..1670990) Pseudomonas putida GB-1 5869254 YP_001667727.1 CDS PputGB1_1486 NC_010322.1 1671087 1671614 D PFAM: protein of unknown function DUF177; KEGG: pen:PSEEN1614 hypothetical protein; hypothetical protein 1671087..1671614 Pseudomonas putida GB-1 5869255 YP_001667728.1 CDS rpmF NC_010322.1 1671628 1671810 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1671628..1671810 Pseudomonas putida GB-1 5869256 YP_001667729.1 CDS PputGB1_1488 NC_010322.1 1671814 1672824 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1671814..1672824 Pseudomonas putida GB-1 5869257 YP_001667730.1 CDS PputGB1_1489 NC_010322.1 1672952 1673890 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pen:PSEEN1617 malonyl-CoA-[acyl-carrier-protein] transacylase; malonyl CoA-acyl carrier protein transacylase 1672952..1673890 Pseudomonas putida GB-1 5869258 YP_001667731.1 CDS fabG NC_010322.1 1673906 1674646 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1673906..1674646 Pseudomonas putida GB-1 5869259 YP_001667732.1 CDS acpP NC_010322.1 1674850 1675086 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1674850..1675086 Pseudomonas putida GB-1 5869260 YP_001667733.1 CDS PputGB1_1492 NC_010322.1 1675276 1676520 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1675276..1676520 Pseudomonas putida GB-1 5869261 YP_001667734.1 CDS PputGB1_1493 NC_010322.1 1676520 1677335 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1676520..1677335 Pseudomonas putida GB-1 5869262 YP_001667735.1 CDS PputGB1_1494 NC_010322.1 1677340 1678542 D PFAM: aminodeoxychorismate lyase; KEGG: pen:PSEEN1623 hypothetical protein; aminodeoxychorismate lyase 1677340..1678542 Pseudomonas putida GB-1 5869263 YP_001667736.1 CDS tmk NC_010322.1 1678552 1679184 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1678552..1679184 Pseudomonas putida GB-1 5869264 YP_001667737.1 CDS PputGB1_1496 NC_010322.1 1679177 1680163 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1679177..1680163 Pseudomonas putida GB-1 5869265 YP_001667738.1 CDS PputGB1_1497 NC_010322.1 1680194 1680976 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1627 deoxyribonuclease, TatD family; TatD family hydrolase 1680194..1680976 Pseudomonas putida GB-1 5869266 YP_001667739.1 CDS PputGB1_1498 NC_010322.1 1681633 1681884 D hypothetical protein 1681633..1681884 Pseudomonas putida GB-1 5869267 YP_001667740.1 CDS PputGB1_1499 NC_010322.1 1682130 1682765 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN1629 transcriptional regulator, TetR family; TetR family transcriptional regulator 1682130..1682765 Pseudomonas putida GB-1 5869268 YP_001667741.1 CDS PputGB1_1500 NC_010322.1 1682876 1683844 D PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN1630 molybdenum cofactor biosynthesis protein A; molybdenum cofactor synthesis domain-containing protein 1682876..1683844 Pseudomonas putida GB-1 5869269 YP_001667742.1 CDS PputGB1_1501 NC_010322.1 1683911 1684516 D KEGG: pen:PSEEN1631 lipoprotein; lipoprotein 1683911..1684516 Pseudomonas putida GB-1 5869270 YP_001667743.1 CDS PputGB1_1502 NC_010322.1 1684527 1685087 D PFAM: protein of unknown function DUF1285; KEGG: pen:PSEEN1632 hypothetical protein; hypothetical protein 1684527..1685087 Pseudomonas putida GB-1 5869271 YP_001667744.1 CDS PputGB1_1503 NC_010322.1 1685223 1685624 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN1633 hypothetical protein; cupin 1685223..1685624 Pseudomonas putida GB-1 5869272 YP_001667745.1 CDS PputGB1_1504 NC_010322.1 1685821 1687017 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1685821..1687017) Pseudomonas putida GB-1 5869274 YP_001667746.1 CDS PputGB1_1505 NC_010322.1 1687305 1689320 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1687305..1689320 Pseudomonas putida GB-1 5869275 YP_001667747.1 CDS PputGB1_1506 NC_010322.1 1689392 1690942 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1637 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter complement(1689392..1690942) Pseudomonas putida GB-1 5869276 YP_001667748.1 CDS PputGB1_1507 NC_010322.1 1690932 1691987 R PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1638 HlyD family secretion protein; secretion protein HlyD family protein complement(1690932..1691987) Pseudomonas putida GB-1 5869277 YP_001667749.1 CDS gltX NC_010322.1 1692131 1693612 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1692131..1693612 Pseudomonas putida GB-1 5869278 YP_001667750.1 CDS PputGB1_1509 NC_010322.1 1694794 1695333 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN1643 transcriptional regulator, TetR family; TetR family transcriptional regulator 1694794..1695333 Pseudomonas putida GB-1 5869285 YP_001667751.1 CDS PputGB1_1510 NC_010322.1 1695349 1696182 D KEGG: pen:PSEEN1644 hydrolase; hydrolase 1695349..1696182 Pseudomonas putida GB-1 5869286 YP_001667752.1 CDS PputGB1_1511 NC_010322.1 1696291 1696725 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN1645 hypothetical protein; thioesterase superfamily protein 1696291..1696725 Pseudomonas putida GB-1 5869287 YP_001667753.1 CDS PputGB1_1512 NC_010322.1 1696777 1697748 D PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN1646 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1696777..1697748 Pseudomonas putida GB-1 5869288 YP_001667754.1 CDS PputGB1_1513 NC_010322.1 1697921 1698364 D PFAM: heat shock protein Hsp20; KEGG: pen:PSEEN1647 small heat-shock protein IbpA; heat shock protein Hsp20 1697921..1698364 Pseudomonas putida GB-1 5869289 YP_001667755.1 CDS PputGB1_1514 NC_010322.1 1698422 1701718 R KEGG: pen:PSEEN1648 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1698422..1701718) Pseudomonas putida GB-1 5869290 YP_001667756.1 CDS PputGB1_1515 NC_010322.1 1701781 1702659 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1649 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1701781..1702659) Pseudomonas putida GB-1 5869291 YP_001667757.1 CDS PputGB1_1516 NC_010322.1 1702791 1704224 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1702791..1704224 Pseudomonas putida GB-1 5869292 YP_001667758.1 CDS leuD NC_010322.1 1704221 1704865 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1704221..1704865 Pseudomonas putida GB-1 5869293 YP_001667759.1 CDS PputGB1_1518 NC_010322.1 1704956 1705720 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_1891 UbiE/COQ5 methyltransferase; type 11 methyltransferase 1704956..1705720 Pseudomonas putida GB-1 5869294 YP_001667760.1 CDS PputGB1_1519 NC_010322.1 1705775 1706857 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1705775..1706857 Pseudomonas putida GB-1 5869295 YP_001667761.1 CDS PputGB1_1520 NC_010322.1 1706921 1708033 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1706921..1708033 Pseudomonas putida GB-1 5869296 YP_001667762.1 CDS PputGB1_1521 NC_010322.1 1708244 1708735 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pap:PSPA7_1717 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1708244..1708735 Pseudomonas putida GB-1 5869297 YP_001667763.1 CDS PputGB1_1522 NC_010322.1 1708850 1709794 D PFAM: FecR protein; KEGG: pen:PSEEN4767 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 1708850..1709794 Pseudomonas putida GB-1 5869298 YP_001667764.1 CDS PputGB1_1523 NC_010322.1 1709904 1713041 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_4301 TonB-dependent receptor; TonB-dependent receptor 1709904..1713041 Pseudomonas putida GB-1 5869299 YP_001667765.1 CDS PputGB1_1524 NC_010322.1 1713117 1713887 D KEGG: plu:plu3515 hypothetical protein; hypothetical protein 1713117..1713887 Pseudomonas putida GB-1 5869300 YP_001667766.1 CDS PputGB1_1525 NC_010322.1 1713979 1715451 D KEGG: mmw:Mmwyl1_4303 conserved hypothetical protein; putative peptide signal; putative peptide signal 1713979..1715451 Pseudomonas putida GB-1 5869301 YP_001667767.1 CDS PputGB1_1526 NC_010322.1 1715535 1716539 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1715535..1716539 Pseudomonas putida GB-1 5869302 YP_001667768.1 CDS PputGB1_1527 NC_010322.1 1716611 1719349 D PFAM: Peptidoglycan-binding LysM; KEGG: pen:PSEEN1688 hypothetical protein; peptidoglycan-binding LysM 1716611..1719349 Pseudomonas putida GB-1 5869303 YP_001667769.1 CDS truA NC_010322.1 1719480 1720340 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1719480..1720340 Pseudomonas putida GB-1 5869304 YP_001667770.1 CDS PputGB1_1529 NC_010322.1 1720402 1721022 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1720402..1721022 Pseudomonas putida GB-1 5869305 YP_001667771.1 CDS PputGB1_1530 NC_010322.1 1721245 1722138 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1721245..1722138 Pseudomonas putida GB-1 5869306 YP_001667772.1 CDS PputGB1_1531 NC_010322.1 1722138 1723445 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN1692 folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1722138..1723445 Pseudomonas putida GB-1 5869307 YP_001667773.1 CDS PputGB1_1532 NC_010322.1 1723429 1724079 D PFAM: Sporulation domain protein; KEGG: pen:PSEEN1693 hypothetical protein; sporulation domain-containing protein 1723429..1724079 Pseudomonas putida GB-1 5869308 YP_001667774.1 CDS PputGB1_1533 NC_010322.1 1724271 1724828 D PFAM: Colicin V production protein; KEGG: pen:PSEEN1694 bacteriocin production protein CvpA; colicin V production protein 1724271..1724828 Pseudomonas putida GB-1 5869309 YP_001667775.1 CDS PputGB1_1534 NC_010322.1 1724871 1726376 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1724871..1726376 Pseudomonas putida GB-1 5869310 YP_001667776.1 CDS PputGB1_1535 NC_010322.1 1726393 1727604 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1726393..1727604 Pseudomonas putida GB-1 5869311 YP_001667777.1 CDS PputGB1_1536 NC_010322.1 1727601 1728374 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1697 oxidoreductase, short chain dehydrogenase/reductase family; oxidoreductase 1727601..1728374 Pseudomonas putida GB-1 5869312 YP_001667778.1 CDS PputGB1_1537 NC_010322.1 1729316 1730128 D KEGG: pen:PSEEN1700 hypothetical protein; hypothetical protein 1729316..1730128 Pseudomonas putida GB-1 5869317 YP_001667779.1 CDS PputGB1_1538 NC_010322.1 1730380 1731420 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1701 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1730380..1731420) Pseudomonas putida GB-1 5869318 YP_001667780.1 CDS PputGB1_1539 NC_010322.1 1731425 1732543 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1702 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1731425..1732543) Pseudomonas putida GB-1 5869319 YP_001667781.1 CDS PputGB1_1540 NC_010322.1 1732736 1734772 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN1703 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1732736..1734772 Pseudomonas putida GB-1 5869320 YP_001667782.1 CDS PputGB1_1541 NC_010322.1 1734869 1735762 D KEGG: pen:PSEEN1704 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase 1734869..1735762 Pseudomonas putida GB-1 5869321 YP_001667783.1 CDS PputGB1_1542 NC_010322.1 1735753 1736298 R PFAM: cytochrome B561; KEGG: pen:PSEEN1705 cytochrome b(561); cytochrome B561 complement(1735753..1736298) Pseudomonas putida GB-1 5869322 YP_001667784.1 CDS PputGB1_1543 NC_010322.1 1736435 1737412 R PFAM: Domain of unknown function DUF1853; KEGG: pen:PSEEN1707 hypothetical protein; hypothetical protein complement(1736435..1737412) Pseudomonas putida GB-1 5869323 YP_001667785.1 CDS ppnK NC_010322.1 1737456 1738346 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1737456..1738346 Pseudomonas putida GB-1 5869324 YP_001667786.1 CDS PputGB1_1545 NC_010322.1 1738346 1739317 D PFAM: metallophosphoesterase; KEGG: pen:PSEEN1709 serine/threonine protein phosphatase; metallophosphoesterase 1738346..1739317 Pseudomonas putida GB-1 5869325 YP_001667787.1 CDS PputGB1_1546 NC_010322.1 1739314 1740201 D PFAM: Rhomboid family protein; KEGG: pen:PSEEN1710 hypothetical protein; rhomboid family protein 1739314..1740201 Pseudomonas putida GB-1 5869326 YP_001667788.1 CDS PputGB1_1547 NC_010322.1 1740215 1740475 D PFAM: protein of unknown function DUF1315; KEGG: pen:PSEEN1711 hypothetical protein; hypothetical protein 1740215..1740475 Pseudomonas putida GB-1 5869327 YP_001667789.1 CDS PputGB1_1548 NC_010322.1 1740472 1741302 D KEGG: pen:PSEEN1712 hypothetical protein; hypothetical protein 1740472..1741302 Pseudomonas putida GB-1 5869328 YP_001667790.1 CDS pepN NC_010322.1 1741316 1743973 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pen:PSEEN1713 aminopeptidase N; aminopeptidase N 1741316..1743973 Pseudomonas putida GB-1 5869329 YP_001667791.1 CDS PputGB1_1550 NC_010322.1 1744158 1745186 D KEGG: pen:PSEEN1714 hypothetical protein; hypothetical protein 1744158..1745186 Pseudomonas putida GB-1 5869330 YP_001667792.1 CDS PputGB1_1551 NC_010322.1 1745183 1747582 D KEGG: pen:PSEEN1715 hypothetical protein; hypothetical protein 1745183..1747582 Pseudomonas putida GB-1 5869331 YP_001667793.1 CDS PputGB1_1552 NC_010322.1 1747646 1747936 D KEGG: pen:PSEEN1716 hypothetical protein; hypothetical protein 1747646..1747936 Pseudomonas putida GB-1 5869332 YP_001667794.1 CDS PputGB1_1553 NC_010322.1 1747890 1749032 D KEGG: pen:PSEEN1717 hypothetical protein; hypothetical protein 1747890..1749032 Pseudomonas putida GB-1 5869333 YP_001667795.1 CDS PputGB1_1554 NC_010322.1 1749155 1749334 D KEGG: pen:PSEEN1719 hypothetical protein; hypothetical protein 1749155..1749334 Pseudomonas putida GB-1 5869334 YP_001667796.1 CDS PputGB1_1555 NC_010322.1 1749467 1750060 R PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1720 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(1749467..1750060) Pseudomonas putida GB-1 5869335 YP_001667797.1 CDS PputGB1_1556 NC_010322.1 1750057 1753701 R PFAM: SMC domain protein; KEGG: pen:PSEEN1721 exonuclease SbcC; SMC domain-containing protein complement(1750057..1753701) Pseudomonas putida GB-1 5869336 YP_001667798.1 CDS PputGB1_1557 NC_010322.1 1753698 1754936 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: pen:PSEEN1722 exonuclease SbcD; nuclease SbcCD subunit D complement(1753698..1754936) Pseudomonas putida GB-1 5869337 YP_001667799.1 CDS PputGB1_1558 NC_010322.1 1755148 1755804 D KEGG: cbd:COXBU7E912_A0039 rhs repeat domain protein; hypothetical protein 1755148..1755804 Pseudomonas putida GB-1 5869338 YP_001667800.1 CDS PputGB1_1559 NC_010322.1 1755960 1757594 R KEGG: pen:PSEEN1725 hypothetical protein; hypothetical protein complement(1755960..1757594) Pseudomonas putida GB-1 5869339 YP_001667801.1 CDS PputGB1_1560 NC_010322.1 1757591 1759306 R PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN1726 hypothetical protein; hypothetical protein complement(1757591..1759306) Pseudomonas putida GB-1 5869340 YP_001667802.1 CDS PputGB1_1561 NC_010322.1 1759303 1760379 R PFAM: von Willebrand factor type A; KEGG: pen:PSEEN1727 hypothetical protein; von Willebrand factor type A complement(1759303..1760379) Pseudomonas putida GB-1 5869341 YP_001667803.1 CDS PputGB1_1562 NC_010322.1 1760372 1760866 R KEGG: pen:PSEEN1728 hypothetical protein; hypothetical protein complement(1760372..1760866) Pseudomonas putida GB-1 5869342 YP_001667804.1 CDS PputGB1_1563 NC_010322.1 1760863 1761807 R PFAM: protein of unknown function DUF58; KEGG: pen:PSEEN1729 hypothetical protein; hypothetical protein complement(1760863..1761807) Pseudomonas putida GB-1 5869343 YP_001667805.1 CDS PputGB1_1564 NC_010322.1 1761812 1762771 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pen:PSEEN1730 ATPase, MoxR-like protein; ATPase complement(1761812..1762771) Pseudomonas putida GB-1 5869344 YP_001667806.1 CDS PputGB1_1565 NC_010322.1 1762998 1764308 D KEGG: pap:PSPA7_3887 rhs element Vgr protein; hypothetical protein 1762998..1764308 Pseudomonas putida GB-1 5869345 YP_001667807.1 CDS PputGB1_1566 NC_010322.1 1764338 1765555 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4437 MFS efflux transporter; major facilitator superfamily transporter complement(1764338..1765555) Pseudomonas putida GB-1 5869346 YP_001667808.1 CDS PputGB1_1567 NC_010322.1 1765614 1766828 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: dac:Daci_3710 benzoate transporter; benzoate transporter complement(1765614..1766828) Pseudomonas putida GB-1 5869347 YP_001667809.1 CDS PputGB1_1568 NC_010322.1 1766905 1767792 R PFAM: dihydrodipicolinate synthetase; KEGG: pap:PSPA7_0309 probable dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(1766905..1767792) Pseudomonas putida GB-1 5869348 YP_001667810.1 CDS PputGB1_1569 NC_010322.1 1767837 1768619 R PFAM: class II aldolase/adducin family protein; KEGG: pae:PA0224 hypothetical protein; class II aldolase/adducin domain-containing protein complement(1767837..1768619) Pseudomonas putida GB-1 5869349 YP_001667811.1 CDS PputGB1_1570 NC_010322.1 1768803 1769276 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_1910 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1768803..1769276 Pseudomonas putida GB-1 5869350 YP_001667812.1 CDS PputGB1_1571 NC_010322.1 1769379 1771523 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; KEGG: mfa:Mfla_1729 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(1769379..1771523) Pseudomonas putida GB-1 5869351 YP_001667813.1 CDS PputGB1_1572 NC_010322.1 1771920 1772216 D KEGG: pfl:PFL_2311 hypothetical protein; hypothetical protein 1771920..1772216 Pseudomonas putida GB-1 5869352 YP_001667814.1 CDS PputGB1_1573 NC_010322.1 1772320 1773213 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_1268 putative HTH-type transcriptional regulator YbhD; LysR family transcriptional regulator complement(1772320..1773213) Pseudomonas putida GB-1 5869353 YP_001667815.1 CDS PputGB1_1574 NC_010322.1 1773361 1774440 D PFAM: protein of unknown function DUF453; KEGG: pap:PSPA7_1269 FldA protein; hypothetical protein 1773361..1774440 Pseudomonas putida GB-1 5869354 YP_001667816.1 CDS PputGB1_1575 NC_010322.1 1774514 1775830 D PFAM: sodium:dicarboxylate symporter; KEGG: pap:PSPA7_1270 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 1774514..1775830 Pseudomonas putida GB-1 5869355 YP_001667817.1 CDS PputGB1_1576 NC_010322.1 1775954 1777258 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pap:PSPA7_1271 citrate transporter; CitMHS family citrate/H+ symporter 1775954..1777258 Pseudomonas putida GB-1 5869356 YP_001667818.1 CDS PputGB1_1577 NC_010322.1 1777326 1778579 D PFAM: outer membrane porin; KEGG: pap:PSPA7_1272 outer membrane porin OprE; outer membrane porin 1777326..1778579 Pseudomonas putida GB-1 5869357 YP_001667819.1 CDS PputGB1_1578 NC_010322.1 1778632 1778880 R PFAM: CsbD family protein; KEGG: pfl:PFL_2569 hypothetical protein; CsbD family protein complement(1778632..1778880) Pseudomonas putida GB-1 5869358 YP_001667820.1 CDS PputGB1_1579 NC_010322.1 1779140 1779595 R TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_4538 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1779140..1779595) Pseudomonas putida GB-1 5869359 YP_001667821.1 CDS PputGB1_1580 NC_010322.1 1779680 1780777 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pap:PSPA7_0892 probable RND efflux membrane fusion protein precursor; RND family efflux transporter MFP subunit 1779680..1780777 Pseudomonas putida GB-1 5869360 YP_001667822.1 CDS PputGB1_1581 NC_010322.1 1780774 1783854 D PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_0891 probable RND efflux transporter; acriflavin resistance protein 1780774..1783854 Pseudomonas putida GB-1 5869361 YP_001667823.1 CDS PputGB1_1582 NC_010322.1 1783879 1784616 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: dac:Daci_1440 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1783879..1784616) Pseudomonas putida GB-1 5869362 YP_001667824.1 CDS PputGB1_1583 NC_010322.1 1784717 1785160 R PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_45980 putative acetyltransferase; N-acetyltransferase GCN5 complement(1784717..1785160) Pseudomonas putida GB-1 5869363 YP_001667825.1 CDS PputGB1_1584 NC_010322.1 1785374 1786348 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_1484 transcriptional regulator, LysR family; LysR family transcriptional regulator 1785374..1786348 Pseudomonas putida GB-1 5869364 YP_001667826.1 CDS PputGB1_1585 NC_010322.1 1786345 1788831 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_2293 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor complement(1786345..1788831) Pseudomonas putida GB-1 5869365 YP_001667827.1 CDS PputGB1_1586 NC_010322.1 1788942 1789877 R PFAM: FecR protein; KEGG: pau:PA14_28980 possible Fe2+-dicitrate sensor; anti-FecI sigma factor FecR complement(1788942..1789877) Pseudomonas putida GB-1 5869366 YP_001667828.1 CDS PputGB1_1587 NC_010322.1 1789882 1790382 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(1789882..1790382) Pseudomonas putida GB-1 5869367 YP_001667829.1 CDS PputGB1_1588 NC_010322.1 1790491 1791723 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(1790491..1791723) Pseudomonas putida GB-1 5869368 YP_001667830.1 CDS PputGB1_1589 NC_010322.1 1791817 1792752 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 1791817..1792752 Pseudomonas putida GB-1 5869369 YP_001667831.1 CDS PputGB1_1590 NC_010322.1 1792761 1793114 R KEGG: pen:PSEEN1739 hypothetical protein; hypothetical protein complement(1792761..1793114) Pseudomonas putida GB-1 5869370 YP_001667832.1 CDS PputGB1_1591 NC_010322.1 1793388 1798253 D PFAM: NAD-glutamate dehydrogenase; KEGG: pen:PSEEN1740 NAD-specific glutamate dehydrogenase; arginine inducible; NAD-glutamate dehydrogenase 1793388..1798253 Pseudomonas putida GB-1 5869371 YP_001667833.1 CDS PputGB1_1592 NC_010322.1 1798357 1799175 R PFAM: protein of unknown function DUF299; KEGG: pen:PSEEN1741 hypothetical protein; hypothetical protein complement(1798357..1799175) Pseudomonas putida GB-1 5869372 YP_001667834.1 CDS PputGB1_1593 NC_010322.1 1799367 1801742 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1799367..1801742 Pseudomonas putida GB-1 5869373 YP_001667835.1 CDS PputGB1_1594 NC_010322.1 1801808 1802836 D KEGG: pen:PSEEN1743 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 1801808..1802836 Pseudomonas putida GB-1 5869374 YP_001667836.1 CDS PputGB1_1595 NC_010322.1 1802994 1803485 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1802994..1803485 Pseudomonas putida GB-1 5869375 YP_001667837.1 CDS PputGB1_1596 NC_010322.1 1803513 1804508 D PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1745 metal ion transporter CmaX protein; Mg2 transporter protein CorA family protein 1803513..1804508 Pseudomonas putida GB-1 5869376 YP_001667838.1 CDS PputGB1_1597 NC_010322.1 1804596 1804868 D KEGG: pen:PSEEN1747 hypothetical protein; hypothetical protein 1804596..1804868 Pseudomonas putida GB-1 5869377 YP_001667839.1 CDS PputGB1_1598 NC_010322.1 1804871 1805695 D PFAM: Conserved TM helix repeat-containing protein; KEGG: pen:PSEEN1748 hypothetical protein; TM helix repeat-containing protein 1804871..1805695 Pseudomonas putida GB-1 5869378 YP_001667840.1 CDS PputGB1_1599 NC_010322.1 1805810 1806376 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 1805810..1806376 Pseudomonas putida GB-1 5869379 YP_001667841.1 CDS PputGB1_1600 NC_010322.1 1806488 1807522 D PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: psp:PSPPH_2068 OprF; OmpF family protein 1806488..1807522 Pseudomonas putida GB-1 5869380 YP_001667842.1 CDS PputGB1_1601 NC_010322.1 1807619 1808359 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(1807619..1808359) Pseudomonas putida GB-1 5869381 YP_001667843.1 CDS PputGB1_1602 NC_010322.1 1808386 1810056 R SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: pen:PSEEN1751 bifunctional serine/threonine-protein kinase and phosphatase; protein serine/threonine phosphatase complement(1808386..1810056) Pseudomonas putida GB-1 5869382 YP_001667844.1 CDS PputGB1_1603 NC_010322.1 1810058 1811269 R TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1752 nitrate transporter; nitrite transporter complement(1810058..1811269) Pseudomonas putida GB-1 5869383 YP_001667845.1 CDS PputGB1_1604 NC_010322.1 1811473 1812048 R PFAM: response regulator receiver; ANTAR domain protein; KEGG: pen:PSEEN1753 response regulator NasT; response regulator receiver/ANTAR domain-containing protein complement(1811473..1812048) Pseudomonas putida GB-1 5869384 YP_001667846.1 CDS PputGB1_1605 NC_010322.1 1812060 1813325 R KEGG: pen:PSEEN1754 nitrate-binding protein NasS; nitrate-binding protein NasS complement(1812060..1813325) Pseudomonas putida GB-1 5869385 YP_001667847.1 CDS PputGB1_1606 NC_010322.1 1813412 1814437 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1813412..1814437 Pseudomonas putida GB-1 5869386 YP_001667848.1 CDS PputGB1_1607 NC_010322.1 1814534 1814749 R PFAM: ribosome modulation factor; KEGG: pen:PSEEN1756 ribosome modulation factor; ribosome modulation factor complement(1814534..1814749) Pseudomonas putida GB-1 5869387 YP_001667849.1 CDS rlmL NC_010322.1 1815311 1817503 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1815311..1817503 Pseudomonas putida GB-1 5869388 YP_001667850.1 CDS PputGB1_1609 NC_010322.1 1817598 1819988 D KEGG: pen:PSEEN1758 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1817598..1819988 Pseudomonas putida GB-1 5869389 YP_001667851.1 CDS PputGB1_1610 NC_010322.1 1820058 1821515 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pen:PSEEN3770 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1820058..1821515) Pseudomonas putida GB-1 5869390 YP_001667852.1 CDS PputGB1_1611 NC_010322.1 1821715 1822059 R PFAM: protein of unknown function DUF469; KEGG: pen:PSEEN3769 hypothetical protein; hypothetical protein complement(1821715..1822059) Pseudomonas putida GB-1 5869391 YP_001667853.1 CDS PputGB1_1612 NC_010322.1 1822101 1823447 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; histidine kinase complement(1822101..1823447) Pseudomonas putida GB-1 5869392 YP_001667854.1 CDS PputGB1_1613 NC_010322.1 1823952 1824230 D PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 1823952..1824230 Pseudomonas putida GB-1 5869393 YP_001667855.1 CDS PputGB1_1614 NC_010322.1 1824221 1825102 D PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 1824221..1825102 Pseudomonas putida GB-1 5869394 YP_001667856.1 CDS PputGB1_1615 NC_010322.1 1825306 1826817 D KEGG: xcv:XCV1411 heat shock protein; heat shock protein 1825306..1826817 Pseudomonas putida GB-1 5869395 YP_001667857.1 CDS PputGB1_1616 NC_010322.1 1826861 1828150 D PFAM: beta-lactamase domain protein; KEGG: hha:Hhal_1314 beta-lactamase domain protein; beta-lactamase domain-containing protein 1826861..1828150 Pseudomonas putida GB-1 5869396 YP_001667858.1 CDS PputGB1_1617 NC_010322.1 1828255 1828773 R PFAM: Group II intron maturase-specific domain protein; KEGG: ajs:Ajs_2219 RNA-directed DNA polymerase; group II intron maturase-specific domain-containing protein complement(1828255..1828773) Pseudomonas putida GB-1 5869397 YP_001667859.1 CDS PputGB1_1618 NC_010322.1 1830344 1831762 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ste:STER_1356 radical SAM superfamily enzyme; radical SAM domain-containing protein 1830344..1831762 Pseudomonas putida GB-1 5869398 YP_001667860.1 CDS PputGB1_1619 NC_010322.1 1833124 1833405 R PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4630 transcriptional regulator, PbsX family; XRE family transcriptional regulator complement(1833124..1833405) Pseudomonas putida GB-1 5869399 YP_001667861.1 CDS PputGB1_1620 NC_010322.1 1833585 1833971 D KEGG: ajs:Ajs_0813 hypothetical protein; hypothetical protein 1833585..1833971 Pseudomonas putida GB-1 5869400 YP_001667862.1 CDS PputGB1_1621 NC_010322.1 1833992 1834654 D hypothetical protein 1833992..1834654 Pseudomonas putida GB-1 5869401 YP_001667863.1 CDS PputGB1_1622 NC_010322.1 1834668 1835168 D hypothetical protein 1834668..1835168 Pseudomonas putida GB-1 5869402 YP_001667864.1 CDS PputGB1_1623 NC_010322.1 1835488 1835775 D hypothetical protein 1835488..1835775 Pseudomonas putida GB-1 5869403 YP_001667865.1 CDS PputGB1_1624 NC_010322.1 1836088 1836756 D KEGG: xcb:XC_2074 hypothetical protein; hypothetical protein 1836088..1836756 Pseudomonas putida GB-1 5869404 YP_001667866.1 CDS PputGB1_1625 NC_010322.1 1836753 1837853 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: hch:HCH_06283 predicted Zn peptidase; hypothetical protein 1836753..1837853 Pseudomonas putida GB-1 5869405 YP_001667867.1 CDS PputGB1_1626 NC_010322.1 1838019 1838225 D hypothetical protein 1838019..1838225 Pseudomonas putida GB-1 5869406 YP_001667868.1 CDS PputGB1_1627 NC_010322.1 1838550 1838711 D KEGG: ent:Ent638_1530 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 1838550..1838711 Pseudomonas putida GB-1 5869407 YP_001667869.1 CDS PputGB1_1628 NC_010322.1 1839105 1841159 D KEGG: rru:Rru_A3021 hypothetical protein; hypothetical protein 1839105..1841159 Pseudomonas putida GB-1 5869408 YP_001667870.1 CDS PputGB1_1629 NC_010322.1 1841524 1842123 D KEGG: vvy:VV1821 hypothetical protein; hypothetical protein 1841524..1842123 Pseudomonas putida GB-1 5869409 YP_001667871.1 CDS PputGB1_1630 NC_010322.1 1842916 1843548 R KEGG: psp:PSPPH_4978 prophage PSPPH06, putative reverse transcriptase/maturase; prophage PSPPH06, putative reverse transcriptase/maturase complement(1842916..1843548) Pseudomonas putida GB-1 5869410 YP_001667872.1 CDS PputGB1_1633 NC_010322.1 1845585 1846598 R KEGG: gur:Gura_3511 hypothetical protein; hypothetical protein complement(1845585..1846598) Pseudomonas putida GB-1 5869412 YP_001667873.1 CDS PputGB1_1634 NC_010322.1 1846846 1847262 D KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 1846846..1847262 Pseudomonas putida GB-1 5869413 YP_001667874.1 CDS PputGB1_1635 NC_010322.1 1847667 1849103 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: psp:PSPPH_4979 prophage PSPPH06, putative reverse transcriptase/maturase; RNA-directed DNA polymerase 1847667..1849103 Pseudomonas putida GB-1 5869414 YP_001667875.1 CDS PputGB1_1636 NC_010322.1 1850583 1850867 D KEGG: psb:Psyr_4647 hypothetical protein; hypothetical protein 1850583..1850867 Pseudomonas putida GB-1 5869415 YP_001667876.1 CDS PputGB1_1637 NC_010322.1 1850916 1851860 R KEGG: gka:GK0172 Hnh endonuclease; restriction endonuclease-like protein complement(1850916..1851860) Pseudomonas putida GB-1 5869416 YP_001667877.1 CDS PputGB1_1638 NC_010322.1 1852561 1853940 R PFAM: integrase family protein; KEGG: mmw:Mmwyl1_4220 phage integrase family protein; integrase family protein complement(1852561..1853940) Pseudomonas putida GB-1 5869417 YP_001667878.1 CDS PputGB1_1639 NC_010322.1 1853937 1854461 R hypothetical protein complement(1853937..1854461) Pseudomonas putida GB-1 5869418 YP_001667879.1 CDS PputGB1_1640 NC_010322.1 1854461 1856713 R KEGG: mmw:Mmwyl1_4222 phage integrase family protein; hypothetical protein complement(1854461..1856713) Pseudomonas putida GB-1 5869419 YP_001667880.1 CDS PputGB1_1641 NC_010322.1 1856706 1858967 R KEGG: mmw:Mmwyl1_4223 hypothetical protein; hypothetical protein complement(1856706..1858967) Pseudomonas putida GB-1 5869420 YP_001667881.1 CDS PputGB1_1642 NC_010322.1 1859258 1861648 R TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; putative PAS/PAC sensor protein complement(1859258..1861648) Pseudomonas putida GB-1 5869421 YP_001667882.1 CDS PputGB1_1643 NC_010322.1 1861657 1862274 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3767 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(1861657..1862274) Pseudomonas putida GB-1 5869422 YP_001667883.1 CDS PputGB1_1644 NC_010322.1 1862558 1863943 R dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1862558..1863943) Pseudomonas putida GB-1 5869423 YP_001667884.1 CDS PputGB1_1645 NC_010322.1 1863971 1864300 R KEGG: pen:PSEEN3765 hypothetical protein; hypothetical protein complement(1863971..1864300) Pseudomonas putida GB-1 5869424 YP_001667885.1 CDS PputGB1_1646 NC_010322.1 1864297 1864671 R KEGG: pen:PSEEN3764 hypothetical protein; hypothetical protein complement(1864297..1864671) Pseudomonas putida GB-1 5869425 YP_001667886.1 CDS PputGB1_1647 NC_010322.1 1864681 1864995 R PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3763 hypothetical protein; hypothetical protein complement(1864681..1864995) Pseudomonas putida GB-1 5869426 YP_001667887.1 CDS PputGB1_1648 NC_010322.1 1865309 1866517 D PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN3762 ammonium transporter; Rh family protein/ammonium transporter 1865309..1866517 Pseudomonas putida GB-1 5869427 YP_001667888.1 CDS PputGB1_1649 NC_010322.1 1866591 1866830 D PFAM: glutaredoxin 2; KEGG: pen:PSEEN3761 hypothetical protein; glutaredoxin 1866591..1866830 Pseudomonas putida GB-1 5869428 YP_001667889.1 CDS PputGB1_1650 NC_010322.1 1866938 1867369 D PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein; peptidase M15A 1866938..1867369 Pseudomonas putida GB-1 5869429 YP_001667890.1 CDS PputGB1_1651 NC_010322.1 1867435 1867743 D KEGG: pen:PSEEN3760 hypothetical protein; hypothetical protein 1867435..1867743 Pseudomonas putida GB-1 5869430 YP_001667891.1 CDS PputGB1_1652 NC_010322.1 1867795 1868679 D PFAM: pseudouridine synthase; KEGG: pen:PSEEN3759 pseudouridylate synthase; pseudouridine synthase 1867795..1868679 Pseudomonas putida GB-1 5869431 YP_001667892.1 CDS PputGB1_1653 NC_010322.1 1868767 1870332 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN3758 aerotaxis receptor; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(1868767..1870332) Pseudomonas putida GB-1 5869432 YP_001667893.1 CDS acnA NC_010322.1 1870494 1873235 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1870494..1873235) Pseudomonas putida GB-1 5869433 YP_001667894.1 CDS PputGB1_1655 NC_010322.1 1873460 1874524 D KEGG: pen:PSEEN3755 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 1873460..1874524 Pseudomonas putida GB-1 5869434 YP_001667895.1 CDS PputGB1_1656 NC_010322.1 1875343 1875585 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1875343..1875585 Pseudomonas putida GB-1 5869435 YP_001667896.1 CDS PputGB1_1657 NC_010322.1 1875646 1876788 D Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1875646..1876788 Pseudomonas putida GB-1 5869436 YP_001667897.1 CDS PputGB1_1658 NC_010322.1 1876848 1877021 R KEGG: pen:PSEEN3752 hypothetical protein; hypothetical protein complement(1876848..1877021) Pseudomonas putida GB-1 5869437 YP_001667898.1 CDS PputGB1_1659 NC_010322.1 1877192 1878994 D KEGG: pen:PSEEN3751 ABC efflux transporter, permease/ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1877192..1878994 Pseudomonas putida GB-1 5869438 YP_001667899.1 CDS PputGB1_1660 NC_010322.1 1879165 1880781 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN3750 methyl-accepting chemotaxis histidine kinase; methyl-accepting chemotaxis sensory transducer 1879165..1880781 Pseudomonas putida GB-1 5869439 YP_001667900.1 CDS PputGB1_1661 NC_010322.1 1880966 1882546 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1880966..1882546 Pseudomonas putida GB-1 5869440 YP_001667901.1 CDS PputGB1_1662 NC_010322.1 1882760 1882981 R PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN3747 hypothetical protein; hypothetical protein complement(1882760..1882981) Pseudomonas putida GB-1 5869442 YP_001667902.1 CDS PputGB1_1663 NC_010322.1 1883169 1883708 D TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN3745 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1883169..1883708 Pseudomonas putida GB-1 5869443 YP_001667903.1 CDS PputGB1_1664 NC_010322.1 1883701 1884918 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pen:PSEEN3744 molybdopterin biosynthesis protein, molybdenum incorporation step; molybdenum cofactor synthesis domain-containing protein 1883701..1884918 Pseudomonas putida GB-1 5869444 YP_001667904.1 CDS PputGB1_1665 NC_010322.1 1884907 1886154 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN3743 glycosyl transferase; glycosyl transferase group 1 protein complement(1884907..1886154) Pseudomonas putida GB-1 5869445 YP_001667905.1 CDS PputGB1_1666 NC_010322.1 1886385 1887272 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1886385..1887272 Pseudomonas putida GB-1 5869446 YP_001667906.1 CDS PputGB1_1667 NC_010322.1 1887256 1887915 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3740 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(1887256..1887915) Pseudomonas putida GB-1 5869447 YP_001667907.1 CDS PputGB1_1668 NC_010322.1 1887905 1888801 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pen:PSEEN3739 sensor histidine kinase; histidine kinase complement(1887905..1888801) Pseudomonas putida GB-1 5869448 YP_001667908.1 CDS PputGB1_1669 NC_010322.1 1889167 1889679 R KEGG: pen:PSEEN3737 hypothetical protein; putative CheA signal transduction histidine kinase complement(1889167..1889679) Pseudomonas putida GB-1 5869449 YP_001667909.1 CDS PputGB1_1670 NC_010322.1 1890027 1890962 D PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3735 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1890027..1890962 Pseudomonas putida GB-1 5869450 YP_001667910.1 CDS PputGB1_1671 NC_010322.1 1891018 1891821 D PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pen:PSEEN3734 hypothetical protein; MOSC domain-containing protein 1891018..1891821 Pseudomonas putida GB-1 5869451 YP_001667911.1 CDS PputGB1_1672 NC_010322.1 1891903 1893828 R PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN3733 lytic murein transglycosylase, soluble; lytic transglycosylase complement(1891903..1893828) Pseudomonas putida GB-1 5869452 YP_001667912.1 CDS PputGB1_1673 NC_010322.1 1894050 1895978 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3732 ABC transporter, ATP-binding protein; ABC transporter-like protein 1894050..1895978 Pseudomonas putida GB-1 5869453 YP_001667913.1 CDS PputGB1_1674 NC_010322.1 1896042 1896482 R PFAM: UspA domain protein; KEGG: pen:PSEEN3731 universal stress protein family; UspA domain-containing protein complement(1896042..1896482) Pseudomonas putida GB-1 5869454 YP_001667914.1 CDS PputGB1_1675 NC_010322.1 1896593 1897030 D KEGG: pen:PSEEN3730 hypothetical protein; hypothetical protein 1896593..1897030 Pseudomonas putida GB-1 5869455 YP_001667915.1 CDS fadB NC_010322.1 1897562 1899709 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1897562..1899709 Pseudomonas putida GB-1 5869456 YP_001667916.1 CDS fadA NC_010322.1 1899741 1900916 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1899741..1900916 Pseudomonas putida GB-1 5869457 YP_001667917.1 CDS PputGB1_1678 NC_010322.1 1900994 1901245 D PFAM: protein of unknown function DUF1653; KEGG: pen:PSEEN3726 hypothetical protein; hypothetical protein 1900994..1901245 Pseudomonas putida GB-1 5869458 YP_001667918.1 CDS PputGB1_1679 NC_010322.1 1901346 1903955 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1901346..1903955 Pseudomonas putida GB-1 5869459 YP_001667919.1 CDS PputGB1_1680 NC_010322.1 1904047 1904562 D KEGG: pen:PSEEN3724 hypothetical protein; hypothetical protein 1904047..1904562 Pseudomonas putida GB-1 5869460 YP_001667920.1 CDS PputGB1_1681 NC_010322.1 1904613 1904846 D KEGG: pen:PSEEN3723 hypothetical protein; hypothetical protein 1904613..1904846 Pseudomonas putida GB-1 5869461 YP_001667921.1 CDS PputGB1_1682 NC_010322.1 1904897 1905373 R KEGG: pen:PSEEN3722 cell division inhibitor-related protein, SulA-like; cell division inhibitor-like protein, SulA-like protein complement(1904897..1905373) Pseudomonas putida GB-1 5869462 YP_001667922.1 CDS PputGB1_1683 NC_010322.1 1905387 1905995 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1905387..1905995) Pseudomonas putida GB-1 5869463 YP_001667923.1 CDS PputGB1_1684 NC_010322.1 1906211 1906918 D PFAM: regulatory protein TetR; KEGG: pfl:PFL_1950 transcriptional regulator, TetR family; TetR family transcriptional regulator 1906211..1906918 Pseudomonas putida GB-1 5869464 YP_001667924.1 CDS PputGB1_1685 NC_010322.1 1906959 1907498 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN3719 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1906959..1907498 Pseudomonas putida GB-1 5869465 YP_001667925.1 CDS PputGB1_1686 NC_010322.1 1907495 1908505 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1907495..1908505 Pseudomonas putida GB-1 5869466 YP_001667926.1 CDS PputGB1_1687 NC_010322.1 1908570 1911887 R KEGG: pen:PSEEN3717 helicase, SNF2/RAD54 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase complement(1908570..1911887) Pseudomonas putida GB-1 5869467 YP_001667927.1 CDS PputGB1_1688 NC_010322.1 1911889 1912461 R KEGG: pen:PSEEN3716 hypothetical protein; hypothetical protein complement(1911889..1912461) Pseudomonas putida GB-1 5869468 YP_001667928.1 CDS PputGB1_1689 NC_010322.1 1912471 1915896 R KEGG: pen:PSEEN3715 transcription-repair coupling protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1912471..1915896) Pseudomonas putida GB-1 5869469 YP_001667929.1 CDS PputGB1_1690 NC_010322.1 1916088 1917551 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1916088..1917551 Pseudomonas putida GB-1 5869470 YP_001667930.1 CDS PputGB1_1691 NC_010322.1 1917709 1918725 D PFAM: ApbE family lipoprotein; KEGG: pen:PSEEN3713 thiamine biosynthesis lipoprotein ApbE-like; ApbE family lipoprotein 1917709..1918725 Pseudomonas putida GB-1 5869471 YP_001667931.1 CDS PputGB1_1692 NC_010322.1 1918912 1920306 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1918912..1920306 Pseudomonas putida GB-1 5869472 YP_001667932.1 CDS PputGB1_1693 NC_010322.1 1920355 1921071 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN3710 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1920355..1921071) Pseudomonas putida GB-1 5869473 YP_001667933.1 CDS PputGB1_1694 NC_010322.1 1921103 1921687 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3709 hypothetical protein; type IV pilus assembly PilZ complement(1921103..1921687) Pseudomonas putida GB-1 5869474 YP_001667934.1 CDS PputGB1_1695 NC_010322.1 1921781 1923031 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3708 lipoprotein releasing system transmembrane protein LolC; LolC/E family lipoprotein releasing system, transmembrane protein 1921781..1923031 Pseudomonas putida GB-1 5869475 YP_001667935.1 CDS PputGB1_1696 NC_010322.1 1923024 1923722 D KEGG: pen:PSEEN3707 lipoprotein releasing system, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1923024..1923722 Pseudomonas putida GB-1 5869476 YP_001667936.1 CDS PputGB1_1697 NC_010322.1 1923784 1925025 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3706 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 1923784..1925025 Pseudomonas putida GB-1 5869477 YP_001667937.1 CDS PputGB1_1698 NC_010322.1 1925066 1926418 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3705 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase complement(1925066..1926418) Pseudomonas putida GB-1 5869478 YP_001667938.1 CDS PputGB1_1699 NC_010322.1 1926415 1927095 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3704 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator complement(1926415..1927095) Pseudomonas putida GB-1 5869479 YP_001667939.1 CDS PputGB1_1700 NC_010322.1 1927278 1927805 D PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN3703 copper-binding protein; blue (type1) copper domain-containing protein 1927278..1927805 Pseudomonas putida GB-1 5869480 YP_001667940.1 CDS queF NC_010322.1 1927874 1928704 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1927874..1928704 Pseudomonas putida GB-1 5869481 YP_001667941.1 CDS PputGB1_1702 NC_010322.1 1928744 1929007 R KEGG: pen:PSEEN3701 hypothetical protein; hypothetical protein complement(1928744..1929007) Pseudomonas putida GB-1 5869482 YP_001667942.1 CDS PputGB1_1703 NC_010322.1 1929130 1929693 R KEGG: pen:PSEEN3700 hypothetical protein; hypothetical protein complement(1929130..1929693) Pseudomonas putida GB-1 5869483 YP_001667943.1 CDS PputGB1_1704 NC_010322.1 1929894 1930601 D PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN3699 VacJ lipoprotein; VacJ family lipoprotein 1929894..1930601 Pseudomonas putida GB-1 5869484 YP_001667944.1 CDS PputGB1_1705 NC_010322.1 1930636 1930935 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3698 hypothetical protein; type IV pilus assembly PilZ complement(1930636..1930935) Pseudomonas putida GB-1 5869485 YP_001667945.1 CDS PputGB1_1706 NC_010322.1 1931206 1932387 D PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3696 response regulator; response regulator receiver modulated serine phosphatase 1931206..1932387 Pseudomonas putida GB-1 5869486 YP_001667946.1 CDS PputGB1_1707 NC_010322.1 1932384 1932866 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3695 anti-anti-sigma factor; anti-sigma-factor antagonist 1932384..1932866 Pseudomonas putida GB-1 5869487 YP_001667947.1 CDS PputGB1_1708 NC_010322.1 1932941 1934791 R KEGG: pen:PSEEN3694 hypothetical protein; hypothetical protein complement(1932941..1934791) Pseudomonas putida GB-1 5869488 YP_001667948.1 CDS PputGB1_1709 NC_010322.1 1934889 1935815 R KEGG: pen:PSEEN3692 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(1934889..1935815) Pseudomonas putida GB-1 5869489 YP_001667949.1 CDS PputGB1_1710 NC_010322.1 1935985 1936995 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN3691 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A complement(1935985..1936995) Pseudomonas putida GB-1 5869490 YP_001667950.1 CDS PputGB1_1711 NC_010322.1 1937095 1938237 D PFAM: integrase family protein; KEGG: pfl:PFL_1976 site-specific recombinase, phage integrase family; integrase family protein 1937095..1938237 Pseudomonas putida GB-1 5869491 YP_001667951.1 CDS PputGB1_1712 NC_010322.1 1938206 1938484 R KEGG: pap:PSPA7_2364 hypothetical protein; hypothetical protein complement(1938206..1938484) Pseudomonas putida GB-1 5869492 YP_001667952.1 CDS PputGB1_1713 NC_010322.1 1938494 1938706 R hypothetical protein complement(1938494..1938706) Pseudomonas putida GB-1 5869493 YP_001667953.1 CDS PputGB1_1714 NC_010322.1 1938717 1940027 R KEGG: aav:Aave_1600 hypothetical protein; hypothetical protein complement(1938717..1940027) Pseudomonas putida GB-1 5869494 YP_001667954.1 CDS PputGB1_1715 NC_010322.1 1940024 1940347 R hypothetical protein complement(1940024..1940347) Pseudomonas putida GB-1 5869495 YP_001667955.1 CDS PputGB1_1716 NC_010322.1 1940392 1941090 D KEGG: shn:Shewana3_2488 hypothetical protein; hypothetical protein 1940392..1941090 Pseudomonas putida GB-1 5869496 YP_001667956.1 CDS PputGB1_1717 NC_010322.1 1941116 1941523 R KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(1941116..1941523) Pseudomonas putida GB-1 5869497 YP_001667957.1 CDS PputGB1_1718 NC_010322.1 1941585 1941944 D PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein 1941585..1941944 Pseudomonas putida GB-1 5869498 YP_001667958.1 CDS PputGB1_1719 NC_010322.1 1941972 1943492 D PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 1941972..1943492 Pseudomonas putida GB-1 5869499 YP_001667959.1 CDS PputGB1_1720 NC_010322.1 1943534 1944838 R KEGG: pap:PSPA7_2374 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(1943534..1944838) Pseudomonas putida GB-1 5869500 YP_001667960.1 CDS PputGB1_1721 NC_010322.1 1944892 1945503 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: xau:Xaut_3681 exonuclease RNase T and DNA polymerase III; exonuclease RNase T and DNA polymerase III complement(1944892..1945503) Pseudomonas putida GB-1 5869501 YP_001667961.1 CDS PputGB1_1722 NC_010322.1 1945568 1947310 R PFAM: SMC domain protein; KEGG: pap:PSPA7_2377 hypothetical protein; SMC domain-containing protein complement(1945568..1947310) Pseudomonas putida GB-1 5869502 YP_001667962.1 CDS PputGB1_1723 NC_010322.1 1947315 1948313 R KEGG: eba:ebA7041 cell division FtsK transmembrane protein; DNA segregation ATPase FtsK/SpoIIIE-like protein complement(1947315..1948313) Pseudomonas putida GB-1 5869503 YP_001667963.1 CDS PputGB1_1724 NC_010322.1 1948323 1948523 R KEGG: pap:PSPA7_2379 hypothetical protein; hypothetical protein complement(1948323..1948523) Pseudomonas putida GB-1 5869504 YP_001667964.1 CDS PputGB1_1725 NC_010322.1 1948530 1949399 R KEGG: pap:PSPA7_2380 hypothetical protein; hypothetical protein complement(1948530..1949399) Pseudomonas putida GB-1 5869505 YP_001667965.1 CDS PputGB1_1726 NC_010322.1 1949408 1950211 R KEGG: pap:PSPA7_2382 hypothetical protein; hypothetical protein complement(1949408..1950211) Pseudomonas putida GB-1 5869506 YP_001667966.1 CDS PputGB1_1727 NC_010322.1 1950330 1950479 R hypothetical protein complement(1950330..1950479) Pseudomonas putida GB-1 5869507 YP_001667967.1 CDS PputGB1_1728 NC_010322.1 1950469 1950624 R hypothetical protein complement(1950469..1950624) Pseudomonas putida GB-1 5869508 YP_001667968.1 CDS PputGB1_1729 NC_010322.1 1950621 1950902 R hypothetical protein complement(1950621..1950902) Pseudomonas putida GB-1 5869509 YP_001667969.1 CDS PputGB1_1730 NC_010322.1 1951008 1951310 R hypothetical protein complement(1951008..1951310) Pseudomonas putida GB-1 5869510 YP_001667970.1 CDS PputGB1_1731 NC_010322.1 1951331 1951663 R hypothetical protein complement(1951331..1951663) Pseudomonas putida GB-1 5869511 YP_001667971.1 CDS PputGB1_1732 NC_010322.1 1952034 1952381 R KEGG: cps:CPS_1624 hypothetical protein; hypothetical protein complement(1952034..1952381) Pseudomonas putida GB-1 5869512 YP_001667972.1 CDS PputGB1_1733 NC_010322.1 1952392 1953060 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: yps:YPTB1790 putative prophage repressor protein; XRE family transcriptional regulator complement(1952392..1953060) Pseudomonas putida GB-1 5869513 YP_001667973.1 CDS PputGB1_1734 NC_010322.1 1953177 1953416 D KEGG: stm:STM0898A hypothetical protein; hypothetical protein 1953177..1953416 Pseudomonas putida GB-1 5869514 YP_001667974.1 CDS PputGB1_1735 NC_010322.1 1953419 1953727 D KEGG: net:Neut_1482 hypothetical protein; hypothetical protein 1953419..1953727 Pseudomonas putida GB-1 5869515 YP_001667975.1 CDS PputGB1_1736 NC_010322.1 1953731 1954642 D PFAM: protein of unknown function DUF1376; KEGG: spq:SPAB_02260 hypothetical protein; hypothetical protein 1953731..1954642 Pseudomonas putida GB-1 5869516 YP_001667976.1 CDS PputGB1_1737 NC_010322.1 1954599 1955171 D KEGG: pap:PSPA7_2397 hypothetical protein; hypothetical protein 1954599..1955171 Pseudomonas putida GB-1 5869517 YP_001667977.1 CDS PputGB1_1738 NC_010322.1 1955168 1955335 D hypothetical protein 1955168..1955335 Pseudomonas putida GB-1 5869518 YP_001667978.1 CDS PputGB1_1739 NC_010322.1 1955507 1955947 D PFAM: endodeoxyribonuclease RusA; KEGG: pap:PSPA7_2398 endodeoxyribonuclease RusA; endodeoxyribonuclease RusA 1955507..1955947 Pseudomonas putida GB-1 5869519 YP_001667979.1 CDS PputGB1_1740 NC_010322.1 1955991 1956620 D KEGG: psb:Psyr_2805 hypothetical protein; hypothetical protein 1955991..1956620 Pseudomonas putida GB-1 5869520 YP_001667980.1 CDS PputGB1_1741 NC_010322.1 1956693 1957604 D KEGG: pvi:Cvib_0124 hypothetical protein; hypothetical protein 1956693..1957604 Pseudomonas putida GB-1 5869521 YP_001667981.1 CDS PputGB1_1742 NC_010322.1 1957904 1958149 D hypothetical protein 1957904..1958149 Pseudomonas putida GB-1 5869522 YP_001667982.1 CDS PputGB1_1743 NC_010322.1 1958146 1958658 D PFAM: glycoside hydrolase family 24; KEGG: pna:Pnap_3296 prophage LambdaSo, lysozyme, putative; glycoside hydrolase 1958146..1958658 Pseudomonas putida GB-1 5869523 YP_001667983.1 CDS PputGB1_1744 NC_010322.1 1958655 1959104 D PFAM: lysis protein; KEGG: pen:PSEEN4130 phage protein; lysis protein 1958655..1959104 Pseudomonas putida GB-1 5869524 YP_001667984.1 CDS PputGB1_1745 NC_010322.1 1959114 1959647 D PFAM: Terminase small subunit; KEGG: bmu:Bmul_1829 terminase small subunit; terminase small subunit 1959114..1959647 Pseudomonas putida GB-1 5869525 YP_001667985.1 CDS PputGB1_1746 NC_010322.1 1959622 1961121 D KEGG: ecv:APECO1_4038 putative phage terminase, large subunit; putative phage terminase large subunit 1959622..1961121 Pseudomonas putida GB-1 5869526 YP_001667986.1 CDS PputGB1_1747 NC_010322.1 1961132 1961395 D hypothetical protein 1961132..1961395 Pseudomonas putida GB-1 5869527 YP_001667987.1 CDS PputGB1_1748 NC_010322.1 1961398 1963092 D KEGG: ecv:APECO1_4041 putative tail protein; putative tail protein 1961398..1963092 Pseudomonas putida GB-1 5869528 YP_001667988.1 CDS PputGB1_1749 NC_010322.1 1963093 1963398 D KEGG: ecv:APECO1_4042 hypothetical protein; hypothetical protein 1963093..1963398 Pseudomonas putida GB-1 5869529 YP_001667989.1 CDS PputGB1_1750 NC_010322.1 1963395 1964096 D KEGG: ecv:APECO1_4043 hypothetical protein; hypothetical protein 1963395..1964096 Pseudomonas putida GB-1 5869530 YP_001667990.1 CDS PputGB1_1751 NC_010322.1 1964107 1965105 D KEGG: ecv:APECO1_4044 hypothetical protein; hypothetical protein 1964107..1965105 Pseudomonas putida GB-1 5869531 YP_001667991.1 CDS PputGB1_1752 NC_010322.1 1965143 1965589 D KEGG: ecv:APECO1_4045 hypothetical protein; hypothetical protein 1965143..1965589 Pseudomonas putida GB-1 5869532 YP_001667992.1 CDS PputGB1_1753 NC_010322.1 1965599 1966039 D hypothetical protein 1965599..1966039 Pseudomonas putida GB-1 5869533 YP_001667993.1 CDS PputGB1_1754 NC_010322.1 1966099 1966734 D KEGG: ecv:APECO1_4048 hypothetical protein; hypothetical protein 1966099..1966734 Pseudomonas putida GB-1 5869534 YP_001667994.1 CDS PputGB1_1755 NC_010322.1 1966731 1969055 D KEGG: ecv:APECO1_4049 hypothetical protein; hypothetical protein 1966731..1969055 Pseudomonas putida GB-1 5869535 YP_001667995.1 CDS PputGB1_1756 NC_010322.1 1969057 1969500 D KEGG: ecv:APECO1_4050 hypothetical protein; hypothetical protein 1969057..1969500 Pseudomonas putida GB-1 5869536 YP_001667996.1 CDS PputGB1_1757 NC_010322.1 1969500 1969961 D KEGG: pde:Pden_3769 hypothetical protein; hypothetical protein 1969500..1969961 Pseudomonas putida GB-1 5869537 YP_001667997.1 CDS PputGB1_1758 NC_010322.1 1969964 1972390 D KEGG: spe:Spro_3877 lytic transglycosylase catalytic; hypothetical protein 1969964..1972390 Pseudomonas putida GB-1 5869538 YP_001667998.1 CDS PputGB1_1759 NC_010322.1 1972387 1974141 D KEGG: spe:Spro_3876 hypothetical protein; hypothetical protein 1972387..1974141 Pseudomonas putida GB-1 5869539 YP_001667999.1 CDS PputGB1_1760 NC_010322.1 1974141 1976708 D KEGG: spe:Spro_3875 hypothetical protein; hypothetical protein 1974141..1976708 Pseudomonas putida GB-1 5869540 YP_001668000.1 CDS PputGB1_1761 NC_010322.1 1976799 1979216 D KEGG: bvi:Bcep1808_1185 parallel beta-helix repeat; hypothetical protein 1976799..1979216 Pseudomonas putida GB-1 5869541 YP_001668001.1 CDS PputGB1_1762 NC_010322.1 1979189 1981177 R PFAM: acyltransferase 3; KEGG: azo:azo3580 putative acyltransferase family protein; acyltransferase 3 complement(1979189..1981177) Pseudomonas putida GB-1 5869542 YP_001668002.1 CDS PputGB1_1763 NC_010322.1 1981302 1981574 D hypothetical protein 1981302..1981574 Pseudomonas putida GB-1 5869543 YP_001668003.1 CDS PputGB1_1764 NC_010322.1 1981866 1982090 D KEGG: pfl:PFL_1976 site-specific recombinase, phage integrase family; hypothetical protein 1981866..1982090 Pseudomonas putida GB-1 5869544 YP_001668004.1 CDS PputGB1_1765 NC_010322.1 1982332 1983600 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase complement(1982332..1983600) Pseudomonas putida GB-1 5869545 YP_001668005.1 CDS PputGB1_1766 NC_010322.1 1983735 1984064 R KEGG: mms:mma_0878 hypothetical protein; hypothetical protein complement(1983735..1984064) Pseudomonas putida GB-1 5869546 YP_001668006.1 CDS PputGB1_1767 NC_010322.1 1984091 1985452 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1984091..1985452) Pseudomonas putida GB-1 5869547 YP_001668007.1 CDS PputGB1_1768 NC_010322.1 1985449 1986705 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1985449..1986705) Pseudomonas putida GB-1 5869548 YP_001668008.1 CDS PputGB1_1769 NC_010322.1 1986702 1987637 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bam:Bamb_5904 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein complement(1986702..1987637) Pseudomonas putida GB-1 5869549 YP_001668009.1 CDS PputGB1_1770 NC_010322.1 1987637 1988467 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bam:Bamb_5905 oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(1987637..1988467) Pseudomonas putida GB-1 5869550 YP_001668010.1 CDS PputGB1_1771 NC_010322.1 1988655 1989893 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3798 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1988655..1989893) Pseudomonas putida GB-1 5869551 YP_001668011.1 CDS PputGB1_1772 NC_010322.1 1990055 1990909 R KEGG: azo:azo3511 conserved hypothetical secreted protein; hypothetical protein complement(1990055..1990909) Pseudomonas putida GB-1 5869552 YP_001668012.1 CDS PputGB1_1773 NC_010322.1 1991215 1992090 D PFAM: helix-turn-helix domain protein; KEGG: acr:Acry_2262 helix-turn-helix domain protein; XRE family transcriptional regulator 1991215..1992090 Pseudomonas putida GB-1 5869553 YP_001668013.1 CDS PputGB1_1774 NC_010322.1 1992349 1993218 R PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: pen:PSEEN3410 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1992349..1993218) Pseudomonas putida GB-1 5869554 YP_001668014.1 CDS PputGB1_1775 NC_010322.1 1993418 1993747 R hypothetical protein complement(1993418..1993747) Pseudomonas putida GB-1 5869555 YP_001668015.1 CDS PputGB1_1776 NC_010322.1 1993944 1994411 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN3672 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(1993944..1994411) Pseudomonas putida GB-1 5869556 YP_001668016.1 CDS PputGB1_1777 NC_010322.1 1994489 1994944 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pfl:PFL_2399 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1994489..1994944 Pseudomonas putida GB-1 5869557 YP_001668017.1 CDS PputGB1_1778 NC_010322.1 1995009 1996529 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pae:PA0476 probable permease; cytosine/purines uracil thiamine allantoin permease complement(1995009..1996529) Pseudomonas putida GB-1 5869558 YP_001668018.1 CDS PputGB1_1779 NC_010322.1 1996824 1997858 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pap:PSPA7_4791 hypothetical protein; hypothetical protein 1996824..1997858 Pseudomonas putida GB-1 5869559 YP_001668019.1 CDS PputGB1_1780 NC_010322.1 1997942 1998658 D KEGG: pap:PSPA7_4792 hypothetical protein; hypothetical protein 1997942..1998658 Pseudomonas putida GB-1 5869560 YP_001668020.1 CDS PputGB1_1781 NC_010322.1 1998675 1999382 R PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN2539 hypothetical protein; hypothetical protein complement(1998675..1999382) Pseudomonas putida GB-1 5869561 YP_001668021.1 CDS PputGB1_1782 NC_010322.1 1999532 2000665 R PFAM: aminotransferase class V; KEGG: pen:PSEEN2741 serine-pyruvate transaminase; class V aminotransferase complement(1999532..2000665) Pseudomonas putida GB-1 5869562 YP_001668022.1 CDS PputGB1_1783 NC_010322.1 2000818 2001744 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3287 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2000818..2001744) Pseudomonas putida GB-1 5869563 YP_001668023.1 CDS PputGB1_1784 NC_010322.1 2001926 2002480 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3720 transcriptional regulator, XRE family; XRE family transcriptional regulator 2001926..2002480 Pseudomonas putida GB-1 5869564 YP_001668024.1 CDS PputGB1_1785 NC_010322.1 2002508 2003854 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2186 glutamine synthetase; glutamine synthetase 2002508..2003854 Pseudomonas putida GB-1 5869565 YP_001668025.1 CDS PputGB1_1786 NC_010322.1 2003927 2004700 D PFAM: peptidase C26; KEGG: pap:PSPA7_0388 probable glutamine amidotransferase; peptidase C26 2003927..2004700 Pseudomonas putida GB-1 5869566 YP_001668026.1 CDS PputGB1_1787 NC_010322.1 2004769 2006127 D PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase 2004769..2006127 Pseudomonas putida GB-1 5869567 YP_001668027.1 CDS PputGB1_1788 NC_010322.1 2006308 2006862 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: bmu:Bmul_3720 transcriptional regulator, XRE family; XRE family transcriptional regulator 2006308..2006862 Pseudomonas putida GB-1 5869568 YP_001668028.1 CDS PputGB1_1789 NC_010322.1 2006974 2007513 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pap:PSPA7_2621 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 2006974..2007513 Pseudomonas putida GB-1 5869569 YP_001668029.1 CDS PputGB1_1790 NC_010322.1 2007681 2008892 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_1814 major facilitator family transporter; major facilitator superfamily transporter 2007681..2008892 Pseudomonas putida GB-1 5869570 YP_001668030.1 CDS PputGB1_1791 NC_010322.1 2008896 2009456 R PFAM: protein of unknown function DUF925; KEGG: pen:PSEEN3673 hypothetical protein; hypothetical protein complement(2008896..2009456) Pseudomonas putida GB-1 5869571 YP_001668031.1 CDS PputGB1_1792 NC_010322.1 2009557 2010636 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA4375 AraC family transcriptional regulator; AraC family transcriptional regulator complement(2009557..2010636) Pseudomonas putida GB-1 5869572 YP_001668032.1 CDS PputGB1_1793 NC_010322.1 2010832 2011842 R PFAM: aminoglycoside phosphotransferase; KEGG: eca:ECA4376 hypothetical protein; aminoglycoside phosphotransferase complement(2010832..2011842) Pseudomonas putida GB-1 5869573 YP_001668033.1 CDS PputGB1_1794 NC_010322.1 2012072 2012845 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2012072..2012845 Pseudomonas putida GB-1 5869574 YP_001668034.1 CDS PputGB1_1795 NC_010322.1 2012887 2014437 D PFAM: amino acid permease-associated region; KEGG: vei:Veis_0667 amino acid permease-associated region; amino acid permease-associated protein 2012887..2014437 Pseudomonas putida GB-1 5869575 YP_001668035.1 CDS PputGB1_1796 NC_010322.1 2014449 2015759 D PFAM: aminotransferase class-III; KEGG: bmu:Bmul_5426 aminotransferase class-III; class III aminotransferase 2014449..2015759 Pseudomonas putida GB-1 5869576 YP_001668036.1 CDS PputGB1_1797 NC_010322.1 2015829 2017754 R PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_1396 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2015829..2017754) Pseudomonas putida GB-1 5869577 YP_001668037.1 CDS PputGB1_1798 NC_010322.1 2018049 2019143 D PFAM: luciferase family protein; KEGG: pst:PSPTO_2590 bacterial luciferase family protein; luciferase family protein 2018049..2019143 Pseudomonas putida GB-1 5869578 YP_001668038.1 CDS PputGB1_1799 NC_010322.1 2019162 2019818 D hypothetical protein 2019162..2019818 Pseudomonas putida GB-1 5869579 YP_001668039.1 CDS PputGB1_1800 NC_010322.1 2019876 2021183 R KEGG: pae:PA4155 hypothetical protein; hypothetical protein complement(2019876..2021183) Pseudomonas putida GB-1 5869580 YP_001668040.1 CDS PputGB1_1801 NC_010322.1 2021241 2023325 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_3620 ferric vibriobactin receptor, putative; TonB-dependent receptor complement(2021241..2023325) Pseudomonas putida GB-1 5869581 YP_001668041.1 CDS PputGB1_1802 NC_010322.1 2023507 2024364 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pau:PA14_10190 putative transcriptional regulator; IclR family transcriptional regulator 2023507..2024364 Pseudomonas putida GB-1 5869582 YP_001668042.1 CDS PputGB1_1803 NC_010322.1 2024374 2025177 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_3622 ferric enterobactin transport protein FepC; ABC transporter-like protein complement(2024374..2025177) Pseudomonas putida GB-1 5869583 YP_001668043.1 CDS PputGB1_1804 NC_010322.1 2025288 2026187 D with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 2025288..2026187 Pseudomonas putida GB-1 5869584 YP_001668044.1 CDS PputGB1_1805 NC_010322.1 2026190 2027194 D PFAM: transport system permease protein; KEGG: pfl:PFL_3624 ferric vibriobactin ABC transporter permease protein; transport system permease 2026190..2027194 Pseudomonas putida GB-1 5869585 YP_001668045.1 CDS PputGB1_1806 NC_010322.1 2027182 2028234 D PFAM: transport system permease protein; KEGG: pau:PA14_10140 ferric enterobactin transport protein FepG; transport system permease 2027182..2028234 Pseudomonas putida GB-1 5869586 YP_001668046.1 CDS PputGB1_1807 NC_010322.1 2028487 2028969 D catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 2028487..2028969 Pseudomonas putida GB-1 5869587 YP_001668047.1 CDS PputGB1_1808 NC_010322.1 2028963 2030522 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pen:PSEEN1827 formate dehydrogenase, beta subunit; NADH dehydrogenase (quinone) 2028963..2030522 Pseudomonas putida GB-1 5869588 YP_001668048.1 CDS PputGB1_1809 NC_010322.1 2030519 2033401 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1828 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2030519..2033401 Pseudomonas putida GB-1 5869589 YP_001668049.1 CDS PputGB1_1810 NC_010322.1 2033398 2033601 D KEGG: pen:PSEEN1829 formate dehydrogenase, delta subunit; formate dehydrogenase subunit delta 2033398..2033601 Pseudomonas putida GB-1 5869590 YP_001668050.1 CDS PputGB1_1811 NC_010322.1 2033762 2034625 R PFAM: UspA domain protein; KEGG: pae:PA1789 hypothetical protein; UspA domain-containing protein complement(2033762..2034625) Pseudomonas putida GB-1 5869591 YP_001668051.1 CDS PputGB1_1812 NC_010322.1 2034778 2035395 D PFAM: tRNA--hydroxylase; KEGG: pen:PSEEN3516 hypothetical protein; tRNA--hydroxylase 2034778..2035395 Pseudomonas putida GB-1 5869592 YP_001668052.1 CDS PputGB1_1813 NC_010322.1 2035418 2035738 R PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3515 hypothetical protein; hypothetical protein complement(2035418..2035738) Pseudomonas putida GB-1 5869593 YP_001668053.1 CDS PputGB1_1814 NC_010322.1 2035867 2036130 D KEGG: pen:PSEEN3514 hypothetical protein; hypothetical protein 2035867..2036130 Pseudomonas putida GB-1 5869594 YP_001668054.1 CDS PputGB1_1815 NC_010322.1 2036149 2036631 R SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN3512 lipoprotein; water stress/hypersensitive response domain-containing protein complement(2036149..2036631) Pseudomonas putida GB-1 5869595 YP_001668055.1 CDS PputGB1_1816 NC_010322.1 2036767 2037891 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3156 RNA polymerase sigma-70 factor, ECF subfamily; anti-FecI sigma factor FecR 2036767..2037891 Pseudomonas putida GB-1 5869596 YP_001668056.1 CDS PputGB1_1817 NC_010322.1 2038039 2040465 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3154 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2038039..2040465 Pseudomonas putida GB-1 5869597 YP_001668057.1 CDS PputGB1_1818 NC_010322.1 2040506 2041396 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3511 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2040506..2041396) Pseudomonas putida GB-1 5869598 YP_001668058.1 CDS PputGB1_1819 NC_010322.1 2041499 2042578 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3510 periplasmic polyamine-binding protein; extracellular solute-binding protein 2041499..2042578 Pseudomonas putida GB-1 5869599 YP_001668059.1 CDS PputGB1_1820 NC_010322.1 2042604 2043569 D catalyzes the formation of putrescine from agmatine; agmatinase 2042604..2043569 Pseudomonas putida GB-1 5869600 YP_001668060.1 CDS PputGB1_1821 NC_010322.1 2043797 2044114 D KEGG: pen:PSEEN3508 hypothetical protein; hypothetical protein 2043797..2044114 Pseudomonas putida GB-1 5869601 YP_001668061.1 CDS PputGB1_1822 NC_010322.1 2044137 2045288 D PFAM: glucose sorbosone dehydrogenase; KEGG: pen:PSEEN3507 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2044137..2045288 Pseudomonas putida GB-1 5869602 YP_001668062.1 CDS PputGB1_1823 NC_010322.1 2045389 2046495 D PFAM: AFG1-family ATPase; KEGG: pen:PSEEN3506 AFG1-like ATPase; AFG1 family ATPase 2045389..2046495 Pseudomonas putida GB-1 5869603 YP_001668063.1 CDS PputGB1_1824 NC_010322.1 2046528 2047526 R PFAM: alpha/beta hydrolase fold; KEGG: pst:PSPTO_3264 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(2046528..2047526) Pseudomonas putida GB-1 5869604 YP_001668064.1 CDS PputGB1_1825 NC_010322.1 2047602 2048039 R KEGG: pen:PSEEN3504 hypothetical protein; hypothetical protein complement(2047602..2048039) Pseudomonas putida GB-1 5869605 YP_001668065.1 CDS PputGB1_1826 NC_010322.1 2048039 2048467 R PFAM: protein of unknown function DUF411; KEGG: pen:PSEEN3503 hypothetical protein; hypothetical protein complement(2048039..2048467) Pseudomonas putida GB-1 5869606 YP_001668066.1 CDS PputGB1_1827 NC_010322.1 2048482 2049357 R PFAM: copper resistance B precursor; KEGG: pen:PSEEN3502 copper resistance protein B; copper resistance B complement(2048482..2049357) Pseudomonas putida GB-1 5869607 YP_001668067.1 CDS PputGB1_1828 NC_010322.1 2049350 2051050 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN3501 copper resistance protein A precursor; CopA family copper resistance protein complement(2049350..2051050) Pseudomonas putida GB-1 5869608 YP_001668068.1 CDS PputGB1_1829 NC_010322.1 2051129 2052463 R PFAM: peptidase U32; KEGG: pen:PSEEN3499 protease, U32 family; peptidase U32 complement(2051129..2052463) Pseudomonas putida GB-1 5869609 YP_001668069.1 CDS PputGB1_1830 NC_010322.1 2052597 2053661 D PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3498 hypothetical protein; hypothetical protein 2052597..2053661 Pseudomonas putida GB-1 5869610 YP_001668070.1 CDS PputGB1_1831 NC_010322.1 2053674 2055122 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; transcriptional regulator 2053674..2055122 Pseudomonas putida GB-1 5869611 YP_001668071.1 CDS PputGB1_1832 NC_010322.1 2055110 2055925 R KEGG: pen:PSEEN2896 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2055110..2055925) Pseudomonas putida GB-1 5869612 YP_001668072.1 CDS PputGB1_1833 NC_010322.1 2056072 2056899 R catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase complement(2056072..2056899) Pseudomonas putida GB-1 5869613 YP_001668073.1 CDS PputGB1_1834 NC_010322.1 2056934 2058040 R catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase complement(2056934..2058040) Pseudomonas putida GB-1 5869614 YP_001668074.1 CDS PputGB1_1835 NC_010322.1 2058153 2059016 D TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3552 transcriptional regulator, LysR family; LysR family transcriptional regulator 2058153..2059016 Pseudomonas putida GB-1 5869615 YP_001668075.1 CDS PputGB1_1836 NC_010322.1 2059055 2060077 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3551 transcriptional regulator, AraC family; AraC family transcriptional regulator 2059055..2060077 Pseudomonas putida GB-1 5869616 YP_001668076.1 CDS PputGB1_1837 NC_010322.1 2060153 2064637 D PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3550 hypothetical protein; hypothetical protein 2060153..2064637 Pseudomonas putida GB-1 5869617 YP_001668077.1 CDS PputGB1_1838 NC_010322.1 2064707 2069233 D SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3550 hypothetical protein; hypothetical protein 2064707..2069233 Pseudomonas putida GB-1 5869618 YP_001668078.1 CDS PputGB1_1839 NC_010322.1 2069358 2071004 D PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3549 acetyl-coA synthetase/AMP-(fatty) acid ligase FadDx; AMP-dependent synthetase and ligase 2069358..2071004 Pseudomonas putida GB-1 5869619 YP_001668079.1 CDS PputGB1_1840 NC_010322.1 2071017 2071784 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN3548 3-hydroxyacyl-CoA dehydrogenase FadB2x; short-chain dehydrogenase/reductase SDR 2071017..2071784 Pseudomonas putida GB-1 5869620 YP_001668080.1 CDS PputGB1_1841 NC_010322.1 2071796 2072989 D KEGG: pen:PSEEN3547 acetyl-CoA acetyltransferase with thiolase domain FadAx; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; acetyl-CoA acetyltransferase 2071796..2072989 Pseudomonas putida GB-1 5869621 YP_001668081.1 CDS PputGB1_1842 NC_010322.1 2072998 2074125 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3546 acyl-CoA dehydrogenase protein FadFx; acyl-CoA dehydrogenase domain-containing protein 2072998..2074125 Pseudomonas putida GB-1 5869622 YP_001668082.1 CDS PputGB1_1843 NC_010322.1 2074139 2074912 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN3545 enoyl-CoA hydratase, FadB1x; enoyl-CoA hydratase/isomerase 2074139..2074912 Pseudomonas putida GB-1 5869623 YP_001668083.1 CDS PputGB1_1844 NC_010322.1 2075247 2075651 D PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN3543 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 2075247..2075651 Pseudomonas putida GB-1 5869624 YP_001668084.1 CDS PputGB1_1845 NC_010322.1 2075829 2076023 D KEGG: pen:PSEEN3541 hypothetical protein; hypothetical protein 2075829..2076023 Pseudomonas putida GB-1 5869625 YP_001668085.1 CDS PputGB1_1846 NC_010322.1 2076354 2076839 D KEGG: pen:PSEEN3540 hypothetical protein; hypothetical protein 2076354..2076839 Pseudomonas putida GB-1 5869626 YP_001668086.1 CDS PputGB1_1847 NC_010322.1 2076836 2077048 D KEGG: pen:PSEEN3539 hypothetical protein; hypothetical protein 2076836..2077048 Pseudomonas putida GB-1 5869627 YP_001668087.1 CDS PputGB1_1848 NC_010322.1 2077061 2077426 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G complement(2077061..2077426) Pseudomonas putida GB-1 5869628 YP_001668088.1 CDS PputGB1_1849 NC_010322.1 2077423 2077701 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F complement(2077423..2077701) Pseudomonas putida GB-1 5869629 YP_001668089.1 CDS PputGB1_1850 NC_010322.1 2077698 2078186 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(2077698..2078186) Pseudomonas putida GB-1 5869630 YP_001668090.1 CDS PputGB1_1851 NC_010322.1 2078183 2079862 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(2078183..2079862) Pseudomonas putida GB-1 5869631 YP_001668091.1 CDS PputGB1_1852 NC_010322.1 2079859 2080203 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(2079859..2080203) Pseudomonas putida GB-1 5869632 YP_001668092.1 CDS PputGB1_1853 NC_010322.1 2080203 2083118 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(2080203..2083118) Pseudomonas putida GB-1 5869633 YP_001668093.1 CDS PputGB1_1854 NC_010322.1 2083268 2084218 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3532 hypothetical protein; hypothetical protein complement(2083268..2084218) Pseudomonas putida GB-1 5869634 YP_001668094.1 CDS PputGB1_1855 NC_010322.1 2084334 2084867 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN3531 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2084334..2084867 Pseudomonas putida GB-1 5869635 YP_001668095.1 CDS PputGB1_1856 NC_010322.1 2084917 2085465 R PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_5042 isochorismatase hydrolase; isochorismatase hydrolase complement(2084917..2085465) Pseudomonas putida GB-1 5869636 YP_001668096.1 CDS PputGB1_1857 NC_010322.1 2085524 2086540 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5041 transcriptional regulator, AraC family; AraC family transcriptional regulator 2085524..2086540 Pseudomonas putida GB-1 5869637 YP_001668097.1 CDS PputGB1_1858 NC_010322.1 2086622 2087002 D KEGG: pen:PSEEN3529 hypothetical protein; hypothetical protein 2086622..2087002 Pseudomonas putida GB-1 5869638 YP_001668098.1 CDS PputGB1_1859 NC_010322.1 2086981 2087751 R KEGG: pmy:Pmen_2291 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein complement(2086981..2087751) Pseudomonas putida GB-1 5869639 YP_001668099.1 CDS PputGB1_1860 NC_010322.1 2087735 2088853 R KEGG: pmy:Pmen_2290 hypothetical protein; hypothetical protein complement(2087735..2088853) Pseudomonas putida GB-1 5869640 YP_001668100.1 CDS PputGB1_1861 NC_010322.1 2089040 2090848 D PFAM: creatinase; peptidase M24; KEGG: pen:PSEEN3528 peptidase, M24 family protein; peptidase M24 2089040..2090848 Pseudomonas putida GB-1 5869641 YP_001668101.1 CDS PputGB1_1862 NC_010322.1 2090888 2091169 R KEGG: pen:PSEEN3527 lipoprotein; lipoprotein complement(2090888..2091169) Pseudomonas putida GB-1 5869642 YP_001668102.1 CDS PputGB1_1863 NC_010322.1 2091360 2092247 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3524 transporter, EamA family; hypothetical protein complement(2091360..2092247) Pseudomonas putida GB-1 5869643 YP_001668103.1 CDS PputGB1_1864 NC_010322.1 2098084 2099892 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1831 ABC efflux transporter, permease/ATP-binding protein; ABC transporter 2098084..2099892 Pseudomonas putida GB-1 5869649 YP_001668104.1 CDS PputGB1_1865 NC_010322.1 2099969 2101174 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2640 major facilitator superfamily transporter; major facilitator superfamily transporter complement(2099969..2101174) Pseudomonas putida GB-1 5869650 YP_001668105.1 CDS PputGB1_1866 NC_010322.1 2101289 2101927 R PFAM: regulatory protein TetR; KEGG: pfl:PFL_2706 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2101289..2101927) Pseudomonas putida GB-1 5869651 YP_001668106.1 CDS PputGB1_1867 NC_010322.1 2102039 2103481 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bmu:Bmul_6019 permease for cytosine/purines uracil thiamine allantoin; cytosine/purines uracil thiamine allantoin permease complement(2102039..2103481) Pseudomonas putida GB-1 5869652 YP_001668107.1 CDS PputGB1_1868 NC_010322.1 2103540 2104724 R PFAM: iron-containing alcohol dehydrogenase; KEGG: rle:RL3344 putative dehydrogenase; iron-containing alcohol dehydrogenase complement(2103540..2104724) Pseudomonas putida GB-1 5869653 YP_001668108.1 CDS PputGB1_1869 NC_010322.1 2104737 2106227 R PFAM: Aldehyde Dehydrogenase; KEGG: bpd:BURPS668_A0734 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase complement(2104737..2106227) Pseudomonas putida GB-1 5869654 YP_001668109.1 CDS PputGB1_1870 NC_010322.1 2106627 2108861 D Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 2106627..2108861 Pseudomonas putida GB-1 5869655 YP_001668110.1 CDS PputGB1_1871 NC_010322.1 2108917 2109204 D KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 2108917..2109204 Pseudomonas putida GB-1 5869656 YP_001668111.1 CDS PputGB1_1872 NC_010322.1 2109201 2110721 D PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 2109201..2110721 Pseudomonas putida GB-1 5869657 YP_001668112.1 CDS PputGB1_1873 NC_010322.1 2110724 2111056 D KEGG: bbr:BB3603 putative iron uptake protein; hypothetical protein 2110724..2111056 Pseudomonas putida GB-1 5869658 YP_001668113.1 CDS PputGB1_1874 NC_010322.1 2111168 2111707 D PFAM: Phosphoglycerate mutase; KEGG: pfl:PFL_2248 phosphoglycerate mutase family protein; phosphoglycerate mutase 2111168..2111707 Pseudomonas putida GB-1 5869659 YP_001668114.1 CDS PputGB1_1875 NC_010322.1 2111711 2112496 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein complement(2111711..2112496) Pseudomonas putida GB-1 5869660 YP_001668115.1 CDS PputGB1_1876 NC_010322.1 2112607 2113200 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pfl:PFL_0806 DNA-binding protein; XRE family transcriptional regulator complement(2112607..2113200) Pseudomonas putida GB-1 5869661 YP_001668116.1 CDS PputGB1_1877 NC_010322.1 2113316 2114452 D PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_0805 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2113316..2114452 Pseudomonas putida GB-1 5869662 YP_001668117.1 CDS PputGB1_1878 NC_010322.1 2114464 2114841 D PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN1840 endoribonuclease; endoribonuclease L-PSP 2114464..2114841 Pseudomonas putida GB-1 5869663 YP_001668118.1 CDS PputGB1_1879 NC_010322.1 2114936 2116009 D KEGG: pfl:PFL_0803 hypothetical protein; hypothetical protein 2114936..2116009 Pseudomonas putida GB-1 5869664 YP_001668119.1 CDS PputGB1_1880 NC_010322.1 2116162 2118048 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1841 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(2116162..2118048) Pseudomonas putida GB-1 5869665 YP_001668120.1 CDS PputGB1_1881 NC_010322.1 2118191 2119069 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1842 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2118191..2119069) Pseudomonas putida GB-1 5869666 YP_001668121.1 CDS PputGB1_1882 NC_010322.1 2119171 2119599 D PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN1843 hypothetical protein; transmembrane pair domain-containing protein 2119171..2119599 Pseudomonas putida GB-1 5869667 YP_001668122.1 CDS PputGB1_1883 NC_010322.1 2119636 2120682 R KEGG: pen:PSEEN1844 hypothetical protein; hypothetical protein complement(2119636..2120682) Pseudomonas putida GB-1 5869668 YP_001668123.1 CDS PputGB1_1884 NC_010322.1 2120815 2121483 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1847 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2120815..2121483) Pseudomonas putida GB-1 5869669 YP_001668124.1 CDS PputGB1_1885 NC_010322.1 2121500 2122204 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1848 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2121500..2122204) Pseudomonas putida GB-1 5869670 YP_001668125.1 CDS PputGB1_1886 NC_010322.1 2122249 2123562 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(2122249..2123562) Pseudomonas putida GB-1 5869671 YP_001668126.1 CDS PputGB1_1887 NC_010322.1 2123790 2124104 R PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1850 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(2123790..2124104) Pseudomonas putida GB-1 5869672 YP_001668127.1 CDS PputGB1_1888 NC_010322.1 2124371 2125936 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pen:PSEEN1851 aerotaxis receptor Aer-1; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 2124371..2125936 Pseudomonas putida GB-1 5869673 YP_001668128.1 CDS PputGB1_1889 NC_010322.1 2125950 2127638 D KEGG: pen:PSEEN1852 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2125950..2127638 Pseudomonas putida GB-1 5869674 YP_001668129.1 CDS PputGB1_1890 NC_010322.1 2127646 2127984 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1854 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2127646..2127984) Pseudomonas putida GB-1 5869675 YP_001668130.1 CDS PputGB1_1891 NC_010322.1 2128195 2129259 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(2128195..2129259) Pseudomonas putida GB-1 5869676 YP_001668131.1 CDS PputGB1_1892 NC_010322.1 2129425 2131173 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psp:PSPPH_1680 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator complement(2129425..2131173) Pseudomonas putida GB-1 5869677 YP_001668132.1 CDS PputGB1_1893 NC_010322.1 2131397 2132491 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_1681 ABC transporter, ATP-binding protein; ABC transporter-like protein 2131397..2132491 Pseudomonas putida GB-1 5869678 YP_001668133.1 CDS PputGB1_1894 NC_010322.1 2132491 2133588 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1682 ABC transporter, ATP-binding protein; ABC transporter-like protein 2132491..2133588 Pseudomonas putida GB-1 5869679 YP_001668134.1 CDS PputGB1_1895 NC_010322.1 2133585 2134451 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_2044 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2133585..2134451 Pseudomonas putida GB-1 5869680 YP_001668135.1 CDS PputGB1_1896 NC_010322.1 2134455 2135255 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3632 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2134455..2135255 Pseudomonas putida GB-1 5869681 YP_001668136.1 CDS PputGB1_1897 NC_010322.1 2135268 2135540 D KEGG: pmy:Pmen_2046 small integral membrane protein-like protein; small integral membrane protein-like protein 2135268..2135540 Pseudomonas putida GB-1 5869682 YP_001668137.1 CDS PputGB1_1898 NC_010322.1 2135580 2137319 D KEGG: pfo:Pfl_3630 extracellular solute-binding protein, family 1; extracellular solute-binding protein 2135580..2137319 Pseudomonas putida GB-1 5869683 YP_001668138.1 CDS PputGB1_1899 NC_010322.1 2137416 2138288 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2137416..2138288) Pseudomonas putida GB-1 5869684 YP_001668139.1 CDS PputGB1_1900 NC_010322.1 2139236 2139535 D KEGG: pen:PSEEN1866 hypothetical protein; hypothetical protein 2139236..2139535 Pseudomonas putida GB-1 5869689 YP_001668140.1 CDS tig NC_010322.1 2139784 2141097 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2139784..2141097 Pseudomonas putida GB-1 5869690 YP_001668141.1 CDS clpP NC_010322.1 2141189 2141830 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2141189..2141830 Pseudomonas putida GB-1 5869691 YP_001668142.1 CDS clpX NC_010322.1 2141939 2143222 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2141939..2143222 Pseudomonas putida GB-1 5869692 YP_001668143.1 CDS PputGB1_1904 NC_010322.1 2143387 2145783 D KEGG: pen:PSEEN1870 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2143387..2145783 Pseudomonas putida GB-1 5869693 YP_001668144.1 CDS PputGB1_1905 NC_010322.1 2145936 2146208 D PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN1871 DNA-binding protein HU-beta; histone family protein DNA-binding protein 2145936..2146208 Pseudomonas putida GB-1 5869694 YP_001668145.1 CDS PputGB1_1906 NC_010322.1 2146390 2148261 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN1872 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 2146390..2148261 Pseudomonas putida GB-1 5869695 YP_001668146.1 CDS PputGB1_1907 NC_010322.1 2148344 2149384 R PFAM: Patatin; KEGG: pen:PSEEN1873 patatin-like phospholipase; patatin complement(2148344..2149384) Pseudomonas putida GB-1 5869696 YP_001668147.1 CDS PputGB1_1908 NC_010322.1 2149563 2149841 D KEGG: pen:PSEEN1874 lipoprotein; lipoprotein 2149563..2149841 Pseudomonas putida GB-1 5869697 YP_001668148.1 CDS PputGB1_1909 NC_010322.1 2149856 2150635 D PFAM: CHAD domain containing protein; KEGG: pen:PSEEN1875 hypothetical protein; CHAD domain-containing protein 2149856..2150635 Pseudomonas putida GB-1 5869698 YP_001668149.1 CDS PputGB1_1910 NC_010322.1 2150713 2151510 D KEGG: pen:PSEEN1876 acyl-CoA thioesterase II; acyl-CoA thioesterase II 2150713..2151510 Pseudomonas putida GB-1 5869699 YP_001668150.1 CDS PputGB1_1911 NC_010322.1 2151547 2151915 R KEGG: pen:PSEEN1877 hypothetical protein; hypothetical protein complement(2151547..2151915) Pseudomonas putida GB-1 5869700 YP_001668151.1 CDS PputGB1_1912 NC_010322.1 2151991 2153469 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1878 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(2151991..2153469) Pseudomonas putida GB-1 5869701 YP_001668152.1 CDS PputGB1_1913 NC_010322.1 2153564 2154358 R PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1879 deoxyribonuclease, TatD family; TatD-related deoxyribonuclease complement(2153564..2154358) Pseudomonas putida GB-1 5869702 YP_001668153.1 CDS PputGB1_1914 NC_010322.1 2154516 2155922 D PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN1880 lytic transglycosylase; lytic transglycosylase 2154516..2155922 Pseudomonas putida GB-1 5869703 YP_001668154.1 CDS PputGB1_1915 NC_010322.1 2156036 2156473 D PFAM: DoxX family protein; KEGG: pen:PSEEN1881 hypothetical protein; DoxX family protein 2156036..2156473 Pseudomonas putida GB-1 5869704 YP_001668155.1 CDS PputGB1_1916 NC_010322.1 2156698 2157006 D KEGG: pen:PSEEN1882 hypothetical protein; hypothetical protein 2156698..2157006 Pseudomonas putida GB-1 5869705 YP_001668156.1 CDS greB NC_010322.1 2157018 2157488 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2157018..2157488 Pseudomonas putida GB-1 5869706 YP_001668157.1 CDS PputGB1_1918 NC_010322.1 2157536 2160043 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN1884 hypothetical protein; hypothetical protein complement(2157536..2160043) Pseudomonas putida GB-1 5869707 YP_001668158.1 CDS PputGB1_1919 NC_010322.1 2160043 2160726 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1885 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2160043..2160726) Pseudomonas putida GB-1 5869708 YP_001668159.1 CDS PputGB1_1920 NC_010322.1 2160743 2161342 D PFAM: lipolytic protein G-D-S-L family; KEGG: pen:PSEEN1886 arylesterase; arylesterase 2160743..2161342 Pseudomonas putida GB-1 5869709 YP_001668160.1 CDS PputGB1_1921 NC_010322.1 2161401 2161691 D KEGG: pen:PSEEN1887 hypothetical protein; hypothetical protein 2161401..2161691 Pseudomonas putida GB-1 5869710 YP_001668161.1 CDS PputGB1_1922 NC_010322.1 2161805 2162782 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN1888 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2161805..2162782 Pseudomonas putida GB-1 5869711 YP_001668162.1 CDS PputGB1_1923 NC_010322.1 2162915 2163166 R KEGG: pen:PSEEN1889 outer membrane lipoprotein OprI; outer membrane lipoprotein OprI complement(2162915..2163166) Pseudomonas putida GB-1 5869712 YP_001668163.1 CDS PputGB1_1924 NC_010322.1 2163673 2163954 D KEGG: pen:PSEEN1890 hypothetical protein; hypothetical protein 2163673..2163954 Pseudomonas putida GB-1 5869713 YP_001668164.1 CDS PputGB1_1925 NC_010322.1 2164013 2165089 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2164013..2165089) Pseudomonas putida GB-1 5869714 YP_001668165.1 CDS PputGB1_1926 NC_010322.1 2165322 2166269 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2165322..2166269 Pseudomonas putida GB-1 5869715 YP_001668166.1 CDS PputGB1_1927 NC_010322.1 2166406 2166903 D PFAM: UspA domain protein; KEGG: pen:PSEEN1894 hypothetical protein; UspA domain-containing protein 2166406..2166903 Pseudomonas putida GB-1 5869716 YP_001668167.1 CDS cysB NC_010322.1 2167033 2168007 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2167033..2168007 Pseudomonas putida GB-1 5869717 YP_001668168.1 CDS PputGB1_1929 NC_010322.1 2168046 2168780 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2168046..2168780) Pseudomonas putida GB-1 5869718 YP_001668169.1 CDS PputGB1_1930 NC_010322.1 2168860 2170203 R KEGG: pen:PSEEN1897 para-aminodeoxychorismate synthase subunit I PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; para-aminobenzoate synthase subunit I complement(2168860..2170203) Pseudomonas putida GB-1 5869719 YP_001668170.1 CDS PputGB1_1931 NC_010322.1 2170358 2171338 R TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: pen:PSEEN1898 hypothetical protein; alpha-L-glutamate ligase-like protein complement(2170358..2171338) Pseudomonas putida GB-1 5869720 YP_001668171.1 CDS PputGB1_1932 NC_010322.1 2171338 2172873 R KEGG: pen:PSEEN1899 hypothetical protein; hypothetical protein complement(2171338..2172873) Pseudomonas putida GB-1 5869721 YP_001668172.1 CDS PputGB1_1933 NC_010322.1 2172879 2173415 R PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN1900 hypothetical protein; hypothetical protein complement(2172879..2173415) Pseudomonas putida GB-1 5869722 YP_001668173.1 CDS PputGB1_1934 NC_010322.1 2173722 2174438 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1901 transcriptional regulator, GntR family; GntR family transcriptional regulator 2173722..2174438 Pseudomonas putida GB-1 5869723 YP_001668174.1 CDS prpB NC_010322.1 2174441 2175325 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2174441..2175325 Pseudomonas putida GB-1 5869724 YP_001668175.1 CDS PputGB1_1936 NC_010322.1 2175386 2176513 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2175386..2176513 Pseudomonas putida GB-1 5869725 YP_001668176.1 CDS PputGB1_1937 NC_010322.1 2176683 2179271 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2176683..2179271 Pseudomonas putida GB-1 5869726 YP_001668177.1 CDS PputGB1_1938 NC_010322.1 2179336 2180526 D TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; AcnD-accessory protein PrpF 2179336..2180526 Pseudomonas putida GB-1 5869727 YP_001668178.1 CDS prpD NC_010322.1 2180599 2182083 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 2180599..2182083 Pseudomonas putida GB-1 5869728 YP_001668179.1 CDS PputGB1_1940 NC_010322.1 2182156 2184714 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2182156..2184714) Pseudomonas putida GB-1 5869729 YP_001668180.1 CDS PputGB1_1941 NC_010322.1 2185135 2185650 D PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN1909 hypothetical protein; hypothetical protein 2185135..2185650 Pseudomonas putida GB-1 5869730 YP_001668181.1 CDS PputGB1_1942 NC_010322.1 2185719 2186075 R TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pen:PSEEN1910 6-pyruvoyl tetrahydrobiopterin synthase SscR; queuosine biosynthesis protein QueD complement(2185719..2186075) Pseudomonas putida GB-1 5869731 YP_001668182.1 CDS PputGB1_1943 NC_010322.1 2186399 2187049 R hypothetical protein complement(2186399..2187049) Pseudomonas putida GB-1 5869732 YP_001668183.1 CDS PputGB1_1944 NC_010322.1 2187130 2188209 R KEGG: pen:PSEEN1911 hypothetical protein; hypothetical protein complement(2187130..2188209) Pseudomonas putida GB-1 5869733 YP_001668184.1 CDS PputGB1_1945 NC_010322.1 2188374 2188682 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1912 hypothetical protein; peptidase 2188374..2188682 Pseudomonas putida GB-1 5869734 YP_001668185.1 CDS PputGB1_1946 NC_010322.1 2188682 2188996 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1913 hypothetical protein; peptidase 2188682..2188996 Pseudomonas putida GB-1 5869735 YP_001668186.1 CDS PputGB1_1947 NC_010322.1 2188997 2189665 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1914 DNA-binding response regulator; two component transcriptional regulator 2188997..2189665 Pseudomonas putida GB-1 5869736 YP_001668187.1 CDS PputGB1_1948 NC_010322.1 2189662 2190981 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN1915 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2189662..2190981 Pseudomonas putida GB-1 5869737 YP_001668188.1 CDS PputGB1_1949 NC_010322.1 2191235 2192389 D PFAM: CBS domain containing protein; HPP family protein?; KEGG: pen:PSEEN1916 hypothetical protein; hypothetical protein 2191235..2192389 Pseudomonas putida GB-1 5869738 YP_001668189.1 CDS PputGB1_1950 NC_010322.1 2192363 2193229 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1917 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2192363..2193229) Pseudomonas putida GB-1 5869739 YP_001668190.1 CDS PputGB1_1951 NC_010322.1 2193409 2195298 D PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN1919 acetyl-CoA synthetase; AMP-dependent synthetase and ligase 2193409..2195298 Pseudomonas putida GB-1 5869740 YP_001668191.1 CDS PputGB1_1952 NC_010322.1 2195364 2196434 R PFAM: AFG1-family ATPase; KEGG: pen:PSEEN1920 ATPase, AFG1 family; AFG1 family ATPase complement(2195364..2196434) Pseudomonas putida GB-1 5869741 YP_001668192.1 CDS PputGB1_1953 NC_010322.1 2196562 2196804 R KEGG: pfo:Pfl_3131 hypothetical protein; hypothetical protein complement(2196562..2196804) Pseudomonas putida GB-1 5869742 YP_001668193.1 CDS PputGB1_1954 NC_010322.1 2197289 2199676 R KEGG: pen:PSEEN3403 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase complement(2197289..2199676) Pseudomonas putida GB-1 5869744 YP_001668194.1 CDS PputGB1_1955 NC_010322.1 2199690 2200151 R PFAM: response regulator receiver; KEGG: pen:PSEEN3402 response regulator; response regulator receiver protein complement(2199690..2200151) Pseudomonas putida GB-1 5869745 YP_001668195.1 CDS PputGB1_1956 NC_010322.1 2200167 2202413 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: pen:PSEEN3401 bacteriophytochrome 1; GAF sensor signal transduction histidine kinase complement(2200167..2202413) Pseudomonas putida GB-1 5869746 YP_001668196.1 CDS PputGB1_1957 NC_010322.1 2202681 2203208 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3400 type 1 pili protein CsuB; spore coat U domain-containing protein 2202681..2203208 Pseudomonas putida GB-1 5869747 YP_001668197.1 CDS PputGB1_1958 NC_010322.1 2203239 2203775 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3399 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2203239..2203775 Pseudomonas putida GB-1 5869748 YP_001668198.1 CDS PputGB1_1959 NC_010322.1 2203794 2204327 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3398 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2203794..2204327 Pseudomonas putida GB-1 5869749 YP_001668199.1 CDS PputGB1_1960 NC_010322.1 2204331 2204834 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3397 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2204331..2204834 Pseudomonas putida GB-1 5869750 YP_001668200.1 CDS PputGB1_1961 NC_010322.1 2204875 2205651 D KEGG: pen:PSEEN3396 type 1 pili usher pathway chaperone CsuC; type 1 pili usher pathway chaperone CsuC 2204875..2205651 Pseudomonas putida GB-1 5869751 YP_001668201.1 CDS PputGB1_1962 NC_010322.1 2205760 2208057 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pen:PSEEN3395 type 1 pili usher protein CsuD; fimbrial biogenesis outer membrane usher protein 2205760..2208057 Pseudomonas putida GB-1 5869752 YP_001668202.1 CDS PputGB1_1963 NC_010322.1 2208054 2209025 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3394 type 1 pili protein CsuE; spore coat U domain-containing protein 2208054..2209025 Pseudomonas putida GB-1 5869753 YP_001668203.1 CDS PputGB1_1964 NC_010322.1 2209092 2210240 R PFAM: peptidase M14 carboxypeptidase A; KEGG: pen:PSEEN3393 zinc-dependent carboxypeptidase (M14 family); peptidase M14 carboxypeptidase A complement(2209092..2210240) Pseudomonas putida GB-1 5869754 YP_001668204.1 CDS PputGB1_1965 NC_010322.1 2210512 2211474 D TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: pae:PA2595 putative sulfonate transport system substrate-binding protein; aliphatic sulfonates ABC transporter substrate-binding protein 2210512..2211474 Pseudomonas putida GB-1 5869755 YP_001668205.1 CDS PputGB1_1966 NC_010322.1 2211489 2212451 D KEGG: pae:PA2594 putative sulfonate transport system substrate-binding protein; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2211489..2212451 Pseudomonas putida GB-1 5869756 YP_001668206.1 CDS PputGB1_1967 NC_010322.1 2212474 2213247 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: psa:PST_1310 AraC protein; AraC family transcriptional regulator complement(2212474..2213247) Pseudomonas putida GB-1 5869757 YP_001668207.1 CDS PputGB1_1968 NC_010322.1 2213284 2214516 R PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2124 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2213284..2214516) Pseudomonas putida GB-1 5869758 YP_001668208.1 CDS PputGB1_1969 NC_010322.1 2214657 2214887 R hypothetical protein complement(2214657..2214887) Pseudomonas putida GB-1 5869759 YP_001668209.1 CDS PputGB1_1970 NC_010322.1 2214880 2215662 R PFAM: VacJ family lipoprotein; KEGG: mag:amb0433 surface lipoprotein; VacJ family lipoprotein complement(2214880..2215662) Pseudomonas putida GB-1 5869760 YP_001668210.1 CDS PputGB1_1971 NC_010322.1 2215839 2216537 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_4997 DNA-binding response regulator; two component transcriptional regulator 2215839..2216537 Pseudomonas putida GB-1 5869761 YP_001668211.1 CDS PputGB1_1972 NC_010322.1 2216534 2217889 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4996 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2216534..2217889 Pseudomonas putida GB-1 5869762 YP_001668212.1 CDS PputGB1_1973 NC_010322.1 2217890 2218354 R PFAM: protein of unknown function DUF1348; KEGG: sit:TM1040_2246 protein of unknown function DUF1348; hypothetical protein complement(2217890..2218354) Pseudomonas putida GB-1 5869763 YP_001668213.1 CDS PputGB1_1974 NC_010322.1 2218555 2219028 D KEGG: pfl:PFL_3034 hypothetical protein; hypothetical protein 2218555..2219028 Pseudomonas putida GB-1 5869764 YP_001668214.1 CDS dkgB NC_010322.1 2219109 2219912 R catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B complement(2219109..2219912) Pseudomonas putida GB-1 5869765 YP_001668215.1 CDS PputGB1_1976 NC_010322.1 2220117 2224298 D PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 2220117..2224298 Pseudomonas putida GB-1 5869766 YP_001668216.1 CDS PputGB1_1977 NC_010322.1 2224345 2224839 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN3408 hypothetical protein; hypothetical protein complement(2224345..2224839) Pseudomonas putida GB-1 5869767 YP_001668217.1 CDS PputGB1_1978 NC_010322.1 2224823 2226475 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN3407 ferredoxin-nitrite reductase; sulfite reductase (ferredoxin) complement(2224823..2226475) Pseudomonas putida GB-1 5869768 YP_001668218.1 CDS PputGB1_1979 NC_010322.1 2226689 2227765 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 2226689..2227765 Pseudomonas putida GB-1 5869769 YP_001668219.1 CDS PputGB1_1980 NC_010322.1 2227851 2227964 D KEGG: pen:PSEEN3404 hypothetical protein; hypothetical protein 2227851..2227964 Pseudomonas putida GB-1 5869770 YP_001668220.1 CDS PputGB1_1981 NC_010322.1 2228034 2228252 R KEGG: pen:PSEEN2042 hypothetical protein; hypothetical protein complement(2228034..2228252) Pseudomonas putida GB-1 5869771 YP_001668221.1 CDS metH NC_010322.1 2228423 2232130 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(2228423..2232130) Pseudomonas putida GB-1 5869772 YP_001668222.1 CDS PputGB1_1983 NC_010322.1 2232314 2234614 D PFAM: fatty acid cistrans isomerase; KEGG: pen:PSEEN3381 esterified fatty acid cis/trans isomerase; fatty acid cistrans isomerase 2232314..2234614 Pseudomonas putida GB-1 5869773 YP_001668223.1 CDS PputGB1_1984 NC_010322.1 2234722 2235756 D PFAM: acyltransferase 3; KEGG: pen:PSEEN3380 acetyltransferase Act; acyltransferase 3 2234722..2235756 Pseudomonas putida GB-1 5869774 YP_001668224.1 CDS PputGB1_1985 NC_010322.1 2235815 2236399 D TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: pen:PSEEN3379 hypothetical protein; IscR-regulated protein YhgI 2235815..2236399 Pseudomonas putida GB-1 5869775 YP_001668225.1 CDS PputGB1_1986 NC_010322.1 2236607 2237215 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN3378 hypothetical protein; electron transport protein SCO1/SenC 2236607..2237215 Pseudomonas putida GB-1 5869776 YP_001668226.1 CDS PputGB1_1987 NC_010322.1 2237216 2237698 D PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN3377 hypothetical protein; hypothetical protein 2237216..2237698 Pseudomonas putida GB-1 5869777 YP_001668227.1 CDS PputGB1_1988 NC_010322.1 2237746 2237973 R KEGG: pen:PSEEN3376 hypothetical protein; hypothetical protein complement(2237746..2237973) Pseudomonas putida GB-1 5869778 YP_001668228.1 CDS PputGB1_1989 NC_010322.1 2238046 2238879 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3375 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2238046..2238879) Pseudomonas putida GB-1 5869779 YP_001668229.1 CDS PputGB1_1990 NC_010322.1 2238876 2239190 R PFAM: branched-chain amino acid transport; KEGG: pen:PSEEN3374 hypothetical protein; branched-chain amino acid transport complement(2238876..2239190) Pseudomonas putida GB-1 5869780 YP_001668230.1 CDS PputGB1_1991 NC_010322.1 2239187 2239879 R PFAM: AzlC family protein; KEGG: pen:PSEEN3373 branched-chain amino acid transport protein, AzlC; AzlC family protein complement(2239187..2239879) Pseudomonas putida GB-1 5869781 YP_001668231.1 CDS PputGB1_1992 NC_010322.1 2239991 2240677 R KEGG: pen:PSEEN3372 hypothetical protein; hypothetical protein complement(2239991..2240677) Pseudomonas putida GB-1 5869782 YP_001668232.1 CDS PputGB1_1993 NC_010322.1 2240825 2241907 R KEGG: pen:PSEEN3371 hypothetical protein; hypothetical protein complement(2240825..2241907) Pseudomonas putida GB-1 5869783 YP_001668233.1 CDS PputGB1_1994 NC_010322.1 2241946 2242572 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3370 transporter, LysE family; lysine exporter protein LysE/YggA complement(2241946..2242572) Pseudomonas putida GB-1 5869784 YP_001668234.1 CDS PputGB1_1995 NC_010322.1 2242575 2243363 R PFAM: Protein of unknown function YqcI/YcgG; KEGG: pen:PSEEN3369 hypothetical protein; hypothetical protein complement(2242575..2243363) Pseudomonas putida GB-1 5869785 YP_001668235.1 CDS PputGB1_1996 NC_010322.1 2243524 2244444 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3368 transcriptional regulator, LysR family; LysR family transcriptional regulator 2243524..2244444 Pseudomonas putida GB-1 5869786 YP_001668236.1 CDS PputGB1_1997 NC_010322.1 2244425 2245321 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3367 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2244425..2245321) Pseudomonas putida GB-1 5869787 YP_001668237.1 CDS PputGB1_1998 NC_010322.1 2245441 2246631 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3366 transporter, MFS family; major facilitator superfamily transporter 2245441..2246631 Pseudomonas putida GB-1 5869788 YP_001668238.1 CDS PputGB1_1999 NC_010322.1 2246698 2249058 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95oC; DNA polymerase II 2246698..2249058 Pseudomonas putida GB-1 5869789 YP_001668239.1 CDS PputGB1_2000 NC_010322.1 2249138 2253634 D SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein 2249138..2253634 Pseudomonas putida GB-1 5869790 YP_001668240.1 CDS PputGB1_2001 NC_010322.1 2253865 2254416 D KEGG: pen:PSEEN3357 hypothetical protein; hypothetical protein 2253865..2254416 Pseudomonas putida GB-1 5869791 YP_001668241.1 CDS PputGB1_2002 NC_010322.1 2254591 2255031 D KEGG: pen:PSEEN3356 hypothetical protein; hypothetical protein 2254591..2255031 Pseudomonas putida GB-1 5869792 YP_001668242.1 CDS PputGB1_2003 NC_010322.1 2255105 2255938 D PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3355 hypothetical protein; hypothetical protein 2255105..2255938 Pseudomonas putida GB-1 5869793 YP_001668243.1 CDS PputGB1_2006 NC_010322.1 2256659 2257141 R PFAM: DoxX family protein; KEGG: pen:PSEEN3339 hypothetical protein; DoxX family protein complement(2256659..2257141) Pseudomonas putida GB-1 5869795 YP_001668244.1 CDS PputGB1_2007 NC_010322.1 2257250 2258536 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2402 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2257250..2258536) Pseudomonas putida GB-1 5869796 YP_001668245.1 CDS PputGB1_2008 NC_010322.1 2258533 2259273 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2403 two-component response regulator; two component transcriptional regulator complement(2258533..2259273) Pseudomonas putida GB-1 5869797 YP_001668246.1 CDS PputGB1_2009 NC_010322.1 2259495 2259770 D KEGG: pen:PSEEN2405 hypothetical protein; hypothetical protein 2259495..2259770 Pseudomonas putida GB-1 5869798 YP_001668247.1 CDS PputGB1_2010 NC_010322.1 2259760 2260296 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2406 thioredoxin; redoxin domain-containing protein 2259760..2260296 Pseudomonas putida GB-1 5869799 YP_001668248.1 CDS PputGB1_2011 NC_010322.1 2260314 2261078 R KEGG: pen:PSEEN2117 hypothetical protein; hypothetical protein complement(2260314..2261078) Pseudomonas putida GB-1 5869800 YP_001668249.1 CDS PputGB1_2012 NC_010322.1 2261143 2262420 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(2261143..2262420) Pseudomonas putida GB-1 5869801 YP_001668250.1 CDS PputGB1_2013 NC_010322.1 2262629 2262793 D KEGG: pst:PSPTO_2036 lipoprotein, putative; hypothetical protein 2262629..2262793 Pseudomonas putida GB-1 5869802 YP_001668251.1 CDS PputGB1_2014 NC_010322.1 2262814 2263902 R hypothetical protein complement(2262814..2263902) Pseudomonas putida GB-1 5869803 YP_001668252.1 CDS PputGB1_2015 NC_010322.1 2263978 2264985 R PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase; 5'-nucleotidase complement(2263978..2264985) Pseudomonas putida GB-1 5869804 YP_001668253.1 CDS PputGB1_2016 NC_010322.1 2265044 2265313 R hypothetical protein complement(2265044..2265313) Pseudomonas putida GB-1 5869805 YP_001668254.1 CDS PputGB1_2017 NC_010322.1 2265673 2266158 D hypothetical protein 2265673..2266158 Pseudomonas putida GB-1 5869806 YP_001668255.1 CDS PputGB1_2018 NC_010322.1 2266208 2266699 R PFAM: protein of unknown function DUF1543; KEGG: pfl:PFL_2512 hypothetical protein; hypothetical protein complement(2266208..2266699) Pseudomonas putida GB-1 5869807 YP_001668256.1 CDS PputGB1_2019 NC_010322.1 2266737 2267627 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: hne:HNE_1372 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2266737..2267627) Pseudomonas putida GB-1 5869808 YP_001668257.1 CDS PputGB1_2020 NC_010322.1 2267722 2268897 D PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1505 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2267722..2268897 Pseudomonas putida GB-1 5869809 YP_001668258.1 CDS PputGB1_2021 NC_010322.1 2269069 2269692 R PFAM: Glutathione S-transferase domain; KEGG: asa:ASA_2515 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(2269069..2269692) Pseudomonas putida GB-1 5869810 YP_001668259.1 CDS PputGB1_2022 NC_010322.1 2269983 2270690 D KEGG: pen:PSEEN2128 hypothetical protein; hypothetical protein 2269983..2270690 Pseudomonas putida GB-1 5869811 YP_001668260.1 CDS PputGB1_2023 NC_010322.1 2270817 2271737 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2270817..2271737 Pseudomonas putida GB-1 5869812 YP_001668261.1 CDS PputGB1_2024 NC_010322.1 2271911 2272687 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3053 oxidoreductase; short-chain dehydrogenase/reductase SDR 2271911..2272687 Pseudomonas putida GB-1 5869813 YP_001668262.1 CDS PputGB1_2025 NC_010322.1 2272739 2273674 R PFAM: cyclase family protein; KEGG: pap:PSPA7_0926 cyclase family protein; cyclase family protein complement(2272739..2273674) Pseudomonas putida GB-1 5869814 YP_001668263.1 CDS PputGB1_2026 NC_010322.1 2273773 2274315 R KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein complement(2273773..2274315) Pseudomonas putida GB-1 5869815 YP_001668264.1 CDS PputGB1_2027 NC_010322.1 2274422 2275408 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_2437 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(2274422..2275408) Pseudomonas putida GB-1 5869816 YP_001668265.1 CDS PputGB1_2028 NC_010322.1 2275566 2275973 R KEGG: reh:H16_A1692 hypothetical protein; hypothetical protein complement(2275566..2275973) Pseudomonas putida GB-1 5869817 YP_001668266.1 CDS PputGB1_2029 NC_010322.1 2275995 2276792 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_3522 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2275995..2276792) Pseudomonas putida GB-1 5869818 YP_001668267.1 CDS PputGB1_2030 NC_010322.1 2276879 2277790 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3524 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2276879..2277790) Pseudomonas putida GB-1 5869819 YP_001668268.1 CDS PputGB1_2031 NC_010322.1 2277909 2278919 D PFAM: aldo/keto reductase; KEGG: bch:Bcen2424_6070 aldo/keto reductase; pyridoxal 4-dehydrogenase 2277909..2278919 Pseudomonas putida GB-1 5869820 YP_001668269.1 CDS PputGB1_2032 NC_010322.1 2278966 2279874 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3898 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2278966..2279874) Pseudomonas putida GB-1 5869821 YP_001668270.1 CDS PputGB1_2033 NC_010322.1 2280029 2281333 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_4138 metabolite-proton symporter; major facilitator superfamily transporter 2280029..2281333 Pseudomonas putida GB-1 5869822 YP_001668271.1 CDS PputGB1_2034 NC_010322.1 2281364 2282605 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2281364..2282605 Pseudomonas putida GB-1 5869823 YP_001668272.1 CDS PputGB1_2035 NC_010322.1 2282605 2283627 D PFAM: histone deacetylase superfamily; KEGG: pfo:Pfl_3895 histone deacetylase superfamily; histone deacetylase superfamily protein 2282605..2283627 Pseudomonas putida GB-1 5869824 YP_001668273.1 CDS PputGB1_2036 NC_010322.1 2283977 2285713 R PFAM: S-type Pyocin domain protein; KEGG: pst:PSPTO_1035 colicin/pyosin nuclease family protein; S-type pyocin domain-containing protein complement(2283977..2285713) Pseudomonas putida GB-1 5869825 YP_001668274.1 CDS PputGB1_2037 NC_010322.1 2285921 2287345 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2394 transcriptional regulator, GntR family; transcriptional regulator complement(2285921..2287345) Pseudomonas putida GB-1 5869826 YP_001668275.1 CDS PputGB1_2038 NC_010322.1 2287671 2289083 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN2395 gamma-aminobutyrate permease GabP-like; amino acid permease-associated protein 2287671..2289083 Pseudomonas putida GB-1 5869827 YP_001668276.1 CDS PputGB1_2039 NC_010322.1 2289087 2289287 R hypothetical protein complement(2289087..2289287) Pseudomonas putida GB-1 5869828 YP_001668277.1 CDS PputGB1_2040 NC_010322.1 2289353 2290201 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2289353..2290201) Pseudomonas putida GB-1 5869829 YP_001668278.1 CDS PputGB1_2041 NC_010322.1 2290198 2290647 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2290198..2290647) Pseudomonas putida GB-1 5869830 YP_001668279.1 CDS PputGB1_2042 NC_010322.1 2290854 2292107 D PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein 2290854..2292107 Pseudomonas putida GB-1 5869831 YP_001668280.1 CDS PputGB1_2043 NC_010322.1 2292100 2293314 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit 2292100..2293314 Pseudomonas putida GB-1 5869832 YP_001668281.1 CDS PputGB1_2044 NC_010322.1 2293331 2296477 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein 2293331..2296477 Pseudomonas putida GB-1 5869833 YP_001668282.1 CDS PputGB1_2045 NC_010322.1 2296594 2297931 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3801 major facilitator family transporter; major facilitator superfamily transporter complement(2296594..2297931) Pseudomonas putida GB-1 5869834 YP_001668283.1 CDS PputGB1_2046 NC_010322.1 2298083 2298841 R KEGG: pfl:PFL_3586 hypothetical protein; hypothetical protein complement(2298083..2298841) Pseudomonas putida GB-1 5869835 YP_001668284.1 CDS PputGB1_2047 NC_010322.1 2298995 2301145 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2377 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2298995..2301145) Pseudomonas putida GB-1 5869836 YP_001668285.1 CDS PputGB1_2048 NC_010322.1 2301212 2301622 R KEGG: pen:PSEEN2378 hypothetical protein; hypothetical protein complement(2301212..2301622) Pseudomonas putida GB-1 5869837 YP_001668286.1 CDS PputGB1_2049 NC_010322.1 2301738 2302514 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pfl:PFL_0481 ParA family protein; cobyrinic acid ac-diamide synthase complement(2301738..2302514) Pseudomonas putida GB-1 5869838 YP_001668287.1 CDS PputGB1_2050 NC_010322.1 2302619 2304190 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3185 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2302619..2304190) Pseudomonas putida GB-1 5869839 YP_001668288.1 CDS PputGB1_2051 NC_010322.1 2304249 2304728 R KEGG: pen:PSEEN3184 hypothetical protein; hypothetical protein complement(2304249..2304728) Pseudomonas putida GB-1 5869840 YP_001668289.1 CDS PputGB1_2052 NC_010322.1 2304845 2305357 D PFAM: GCN5-related N-acetyltransferase; KEGG: psb:Psyr_3098 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2304845..2305357 Pseudomonas putida GB-1 5869841 YP_001668290.1 CDS PputGB1_2053 NC_010322.1 2305480 2305803 D KEGG: pin:Ping_1187 hypothetical protein; hypothetical protein 2305480..2305803 Pseudomonas putida GB-1 5869842 YP_001668291.1 CDS PputGB1_2054 NC_010322.1 2305850 2307187 R PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family; outer membrane porin complement(2305850..2307187) Pseudomonas putida GB-1 5869843 YP_001668292.1 CDS PputGB1_2055 NC_010322.1 2307184 2307618 R TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: pde:Pden_2983 pseudoazurin; pseudoazurin complement(2307184..2307618) Pseudomonas putida GB-1 5869844 YP_001668293.1 CDS PputGB1_2056 NC_010322.1 2307636 2308424 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_3008 iron ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2307636..2308424) Pseudomonas putida GB-1 5869845 YP_001668294.1 CDS PputGB1_2057 NC_010322.1 2308421 2309437 R PFAM: transport system permease protein; ABC-3 protein; KEGG: psp:PSPPH_3007 iron ABC transporter, permease protein, putative; transport system permease complement(2308421..2309437) Pseudomonas putida GB-1 5869846 YP_001668295.1 CDS PputGB1_2058 NC_010322.1 2309437 2310447 R PFAM: periplasmic binding protein; KEGG: psp:PSPPH_3006 iron compound ABC transporter, periplasmic iron compound-binding protein; periplasmic binding protein complement(2309437..2310447) Pseudomonas putida GB-1 5869847 YP_001668296.1 CDS PputGB1_2059 NC_010322.1 2310786 2311952 R KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein complement(2310786..2311952) Pseudomonas putida GB-1 5869848 YP_001668297.1 CDS PputGB1_2060 NC_010322.1 2312094 2314220 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2012 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor complement(2312094..2314220) Pseudomonas putida GB-1 5869849 YP_001668298.1 CDS PputGB1_2061 NC_010322.1 2314602 2315171 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2134 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2314602..2315171) Pseudomonas putida GB-1 5869850 YP_001668299.1 CDS PputGB1_2062 NC_010322.1 2315250 2315594 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN2135 carboxymuconolactone decarboxylase; alkylhydroperoxidase complement(2315250..2315594) Pseudomonas putida GB-1 5869851 YP_001668300.1 CDS PputGB1_2063 NC_010322.1 2315728 2316627 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN2136 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase complement(2315728..2316627) Pseudomonas putida GB-1 5869852 YP_001668301.1 CDS PputGB1_2064 NC_010322.1 2316786 2317331 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pen:PSEEN2137 2'-5' RNA ligase; 2'-5' RNA ligase 2316786..2317331 Pseudomonas putida GB-1 5869853 YP_001668302.1 CDS PputGB1_2065 NC_010322.1 2317339 2319768 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_3491 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; TonB-dependent siderophore receptor complement(2317339..2319768) Pseudomonas putida GB-1 5869854 YP_001668303.1 CDS PputGB1_2066 NC_010322.1 2319862 2320836 R PFAM: FecR protein; KEGG: mms:mma_2023 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR complement(2319862..2320836) Pseudomonas putida GB-1 5869855 YP_001668304.1 CDS PputGB1_2067 NC_010322.1 2320833 2321339 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3271 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(2320833..2321339) Pseudomonas putida GB-1 5869856 YP_001668305.1 CDS PputGB1_2068 NC_010322.1 2321428 2322024 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN2157 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(2321428..2322024) Pseudomonas putida GB-1 5869857 YP_001668306.1 CDS PputGB1_2069 NC_010322.1 2322117 2322713 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN2158 transcriptional regulator, TetR family; TetR family transcriptional regulator 2322117..2322713 Pseudomonas putida GB-1 5869858 YP_001668307.1 CDS PputGB1_2070 NC_010322.1 2322763 2323668 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_1817 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2322763..2323668) Pseudomonas putida GB-1 5869859 YP_001668308.1 CDS PputGB1_2071 NC_010322.1 2323850 2324902 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_1816 oxidoreductase, zinc-binding; alcohol dehydrogenase 2323850..2324902 Pseudomonas putida GB-1 5869860 YP_001668309.1 CDS PputGB1_2072 NC_010322.1 2324982 2326298 R KEGG: pen:PSEEN2301 hypothetical protein; hypothetical protein complement(2324982..2326298) Pseudomonas putida GB-1 5869861 YP_001668310.1 CDS PputGB1_2073 NC_010322.1 2326503 2327702 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2302 sugar exporter, MFS family; sugar efflux transporter 2326503..2327702 Pseudomonas putida GB-1 5869862 YP_001668311.1 CDS PputGB1_2074 NC_010322.1 2327753 2328337 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2303 transporter, LysE family; lysine exporter protein LysE/YggA complement(2327753..2328337) Pseudomonas putida GB-1 5869863 YP_001668312.1 CDS PputGB1_2075 NC_010322.1 2328388 2329224 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN2304 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2328388..2329224) Pseudomonas putida GB-1 5869864 YP_001668313.1 CDS PputGB1_2076 NC_010322.1 2329267 2330196 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2306 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2329267..2330196) Pseudomonas putida GB-1 5869865 YP_001668314.1 CDS PputGB1_2077 NC_010322.1 2330294 2330947 D catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 2330294..2330947 Pseudomonas putida GB-1 5869866 YP_001668315.1 CDS PputGB1_2078 NC_010322.1 2331057 2331506 D PFAM: conserved hypothetical protein; KEGG: psa:PST_0247 hypothetical protein; hypothetical protein 2331057..2331506 Pseudomonas putida GB-1 5869867 YP_001668316.1 CDS PputGB1_2079 NC_010322.1 2331503 2331940 D PFAM: RES domain protein; KEGG: rpb:RPB_4184 hypothetical protein; RES domain-containing protein 2331503..2331940 Pseudomonas putida GB-1 5869868 YP_001668317.1 CDS PputGB1_2080 NC_010322.1 2331948 2333102 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN3349 cysteine desulfurase; class V aminotransferase complement(2331948..2333102) Pseudomonas putida GB-1 5869869 YP_001668318.1 CDS PputGB1_2081 NC_010322.1 2333297 2334223 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3344 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2333297..2334223) Pseudomonas putida GB-1 5869870 YP_001668319.1 CDS PputGB1_2082 NC_010322.1 2334364 2335593 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3343 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2334364..2335593 Pseudomonas putida GB-1 5869871 YP_001668320.1 CDS PputGB1_2083 NC_010322.1 2335892 2337292 D KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein 2335892..2337292 Pseudomonas putida GB-1 5869872 YP_001668321.1 CDS PputGB1_2084 NC_010322.1 2337312 2337674 D hypothetical protein 2337312..2337674 Pseudomonas putida GB-1 5869873 YP_001668322.1 CDS PputGB1_2085 NC_010322.1 2337741 2338472 D KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein 2337741..2338472 Pseudomonas putida GB-1 5869874 YP_001668323.1 CDS PputGB1_2086 NC_010322.1 2338864 2339928 R PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN3035 hypothetical protein; integral membrane protein TerC complement(2338864..2339928) Pseudomonas putida GB-1 5869875 YP_001668324.1 CDS PputGB1_2087 NC_010322.1 2340095 2341402 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3030 periplamic phosphate-binding protein; OmpA/MotB domain-containing protein complement(2340095..2341402) Pseudomonas putida GB-1 5869876 YP_001668325.1 CDS PputGB1_2088 NC_010322.1 2341516 2342664 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3041 polyamine ABC transporter, ATP binding protein; ABC transporter-like protein complement(2341516..2342664) Pseudomonas putida GB-1 5869877 YP_001668326.1 CDS PputGB1_2089 NC_010322.1 2342682 2343488 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3040 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2342682..2343488) Pseudomonas putida GB-1 5869878 YP_001668327.1 CDS PputGB1_2090 NC_010322.1 2343495 2344412 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3039 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2343495..2344412) Pseudomonas putida GB-1 5869879 YP_001668328.1 CDS PputGB1_2091 NC_010322.1 2344409 2345434 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3038 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(2344409..2345434) Pseudomonas putida GB-1 5869880 YP_001668329.1 CDS PputGB1_2092 NC_010322.1 2345791 2346912 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein complement(2345791..2346912) Pseudomonas putida GB-1 5869881 YP_001668330.1 CDS PputGB1_2093 NC_010322.1 2346991 2347284 D PFAM: protein of unknown function DUF1330; KEGG: pen:PSEEN3036 hypothetical protein; hypothetical protein 2346991..2347284 Pseudomonas putida GB-1 5869882 YP_001668331.1 CDS PputGB1_2094 NC_010322.1 2347349 2348368 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pfo:Pfl_1969 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein complement(2347349..2348368) Pseudomonas putida GB-1 5869883 YP_001668332.1 CDS PputGB1_2095 NC_010322.1 2348503 2349399 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1970 transcriptional regulator, LysR family; LysR family transcriptional regulator 2348503..2349399 Pseudomonas putida GB-1 5869884 YP_001668333.1 CDS PputGB1_2096 NC_010322.1 2349407 2350669 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2702 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(2349407..2350669) Pseudomonas putida GB-1 5869885 YP_001668334.1 CDS PputGB1_2097 NC_010322.1 2350644 2351456 R PFAM: protein of unknown function DUF1365; KEGG: pen:PSEEN2703 hypothetical protein; hypothetical protein complement(2350644..2351456) Pseudomonas putida GB-1 5869886 YP_001668335.1 CDS PputGB1_2098 NC_010322.1 2351453 2352700 R PFAM: amine oxidase; KEGG: pen:PSEEN2704 hypothetical protein; amine oxidase complement(2351453..2352700) Pseudomonas putida GB-1 5869887 YP_001668336.1 CDS PputGB1_2099 NC_010322.1 2352704 2353456 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2705 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2352704..2353456) Pseudomonas putida GB-1 5869888 YP_001668337.1 CDS PputGB1_2100 NC_010322.1 2353453 2353875 R PFAM: protein of unknown function DUF1486; KEGG: pen:PSEEN2706 hypothetical protein; hypothetical protein complement(2353453..2353875) Pseudomonas putida GB-1 5869889 YP_001668338.1 CDS PputGB1_2101 NC_010322.1 2354019 2354603 R KEGG: pmy:Pmen_3475 hypothetical protein; hypothetical protein complement(2354019..2354603) Pseudomonas putida GB-1 5869890 YP_001668339.1 CDS PputGB1_2102 NC_010322.1 2354607 2357510 R PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein barrel; KEGG: pmy:Pmen_3474 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(2354607..2357510) Pseudomonas putida GB-1 5869891 YP_001668340.1 CDS PputGB1_2103 NC_010322.1 2357507 2357812 R PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: psb:Psyr_2223 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta heterotetrameric complement(2357507..2357812) Pseudomonas putida GB-1 5869892 YP_001668341.1 CDS PputGB1_2104 NC_010322.1 2357825 2359066 R PFAM: FAD dependent oxidoreductase; KEGG: pmy:Pmen_3472 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2357825..2359066) Pseudomonas putida GB-1 5869893 YP_001668342.1 CDS PputGB1_2105 NC_010322.1 2359048 2359959 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2359048..2359959) Pseudomonas putida GB-1 5869894 YP_001668343.1 CDS PputGB1_2106 NC_010322.1 2359956 2360822 R TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: pmy:Pmen_3470 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase complement(2359956..2360822) Pseudomonas putida GB-1 5869895 YP_001668344.1 CDS PputGB1_2107 NC_010322.1 2361033 2361434 D KEGG: pen:PSEEN3331 hypothetical protein; hypothetical protein 2361033..2361434 Pseudomonas putida GB-1 5869896 YP_001668345.1 CDS PputGB1_2108 NC_010322.1 2361568 2361789 D PFAM: MbtH domain protein; KEGG: pen:PSEEN3329 hypothetical protein; MbtH domain-containing protein 2361568..2361789 Pseudomonas putida GB-1 5869897 YP_001668346.1 CDS PputGB1_2109 NC_010322.1 2361786 2362505 D PFAM: Thioesterase; KEGG: pen:PSEEN3328 thioesterase involved in non-ribosomal peptide biosynthesis; thioesterase 2361786..2362505 Pseudomonas putida GB-1 5869898 YP_001668347.1 CDS PputGB1_2110 NC_010322.1 2362563 2363114 D PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3325 hydrolase, isochorismatase family; isochorismatase hydrolase 2362563..2363114 Pseudomonas putida GB-1 5869899 YP_001668348.1 CDS PputGB1_2111 NC_010322.1 2363141 2364193 D PFAM: protein of unknown function DUF1615; KEGG: pen:PSEEN3324 hypothetical protein; hypothetical protein 2363141..2364193 Pseudomonas putida GB-1 5869900 YP_001668349.1 CDS PputGB1_2112 NC_010322.1 2364223 2365086 R KEGG: pen:PSEEN3242 hypothetical protein; hypothetical protein complement(2364223..2365086) Pseudomonas putida GB-1 5869901 YP_001668350.1 CDS PputGB1_2113 NC_010322.1 2365083 2365982 R PFAM: ABC-3 protein; KEGG: pen:PSEEN3241 cation ABC transporter, permease protein; ABC-3 protein complement(2365083..2365982) Pseudomonas putida GB-1 5869902 YP_001668351.1 CDS PputGB1_2114 NC_010322.1 2365982 2366728 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3240 cation ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2365982..2366728) Pseudomonas putida GB-1 5869903 YP_001668352.1 CDS PputGB1_2115 NC_010322.1 2366725 2367627 R PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN3239 cation ABC transporter, periplasmic cation-binding protein; periplasmic solute binding protein complement(2366725..2367627) Pseudomonas putida GB-1 5869904 YP_001668353.1 CDS PputGB1_2116 NC_010322.1 2367644 2368213 R KEGG: pen:PSEEN3238 hypothetical protein; hypothetical protein complement(2367644..2368213) Pseudomonas putida GB-1 5869905 YP_001668354.1 CDS PputGB1_2117 NC_010322.1 2368210 2368530 R KEGG: pen:PSEEN3237 hypothetical protein; hypothetical protein complement(2368210..2368530) Pseudomonas putida GB-1 5869906 YP_001668355.1 CDS PputGB1_2118 NC_010322.1 2368527 2369066 R KEGG: pen:PSEEN3236 hypothetical protein; hypothetical protein complement(2368527..2369066) Pseudomonas putida GB-1 5869907 YP_001668356.1 CDS PputGB1_2119 NC_010322.1 2369063 2370256 R PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN3235 hypothetical protein; peptidase complement(2369063..2370256) Pseudomonas putida GB-1 5869908 YP_001668357.1 CDS PputGB1_2120 NC_010322.1 2370433 2371767 R KEGG: pen:PSEEN3223 L-ornithine N5-oxygenase PvdA; L-ornithine N5-oxygenase PvdA complement(2370433..2371767) Pseudomonas putida GB-1 5869909 YP_001668358.1 CDS PputGB1_2121 NC_010322.1 2371942 2372388 D KEGG: pen:PSEEN3219 hypothetical protein; hypothetical protein 2371942..2372388 Pseudomonas putida GB-1 5869910 YP_001668359.1 CDS pbpG NC_010322.1 2372479 2373405 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2372479..2373405) Pseudomonas putida GB-1 5869911 YP_001668360.1 CDS PputGB1_2123 NC_010322.1 2373948 2374145 D KEGG: pen:PSEEN3601 transcriptional regulator CynR; transcriptional regulator CynR 2373948..2374145 Pseudomonas putida GB-1 5869912 YP_001668361.1 CDS PputGB1_2124 NC_010322.1 2374388 2375092 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2374388..2375092 Pseudomonas putida GB-1 5869913 YP_001668362.1 CDS PputGB1_2125 NC_010322.1 2375146 2375700 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bvi:Bcep1808_4018 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2375146..2375700 Pseudomonas putida GB-1 5869914 YP_001668363.1 CDS PputGB1_2126 NC_010322.1 2375717 2376109 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN5448 endoribonuclease L-PSP; endoribonuclease L-PSP 2375717..2376109 Pseudomonas putida GB-1 5869915 YP_001668364.1 CDS PputGB1_2127 NC_010322.1 2376209 2377852 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2376209..2377852 Pseudomonas putida GB-1 5869916 YP_001668365.1 CDS PputGB1_2128 NC_010322.1 2378242 2378478 R hypothetical protein complement(2378242..2378478) Pseudomonas putida GB-1 5869917 YP_001668366.1 CDS PputGB1_2129 NC_010322.1 2378669 2379343 R PFAM: Alginate lyase 2; KEGG: pap:PSPA7_2458 alginate lyase superfamily; alginate lyase 2 complement(2378669..2379343) Pseudomonas putida GB-1 5869918 YP_001668367.1 CDS PputGB1_2130 NC_010322.1 2379589 2379912 D PFAM: protein of unknown function DUF1654; KEGG: psp:PSPPH_2150 hypothetical protein; hypothetical protein 2379589..2379912 Pseudomonas putida GB-1 5869919 YP_001668368.1 CDS PputGB1_2131 NC_010322.1 2379951 2380820 R PFAM: peptidase S24 and S26 domain protein; KEGG: psp:PSPPH_2151 prophage PSPPH03, transcriptional regulator, Cro/CI family; putative phage repressor complement(2379951..2380820) Pseudomonas putida GB-1 5869920 YP_001668369.1 CDS PputGB1_2132 NC_010322.1 2380940 2381254 D KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein 2380940..2381254 Pseudomonas putida GB-1 5869921 YP_001668370.1 CDS PputGB1_2133 NC_010322.1 2381331 2381513 R KEGG: pen:PSEEN3216 hypothetical protein; hypothetical protein complement(2381331..2381513) Pseudomonas putida GB-1 5869922 YP_001668371.1 CDS PputGB1_2134 NC_010322.1 2381608 2381958 R KEGG: pen:PSEEN3215 hypothetical protein; hypothetical protein complement(2381608..2381958) Pseudomonas putida GB-1 5869923 YP_001668372.1 CDS PputGB1_2135 NC_010322.1 2382120 2382941 D catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2382120..2382941 Pseudomonas putida GB-1 5869924 YP_001668373.1 CDS PputGB1_2136 NC_010322.1 2383006 2383248 R KEGG: pen:PSEEN3213 hypothetical protein; hypothetical protein complement(2383006..2383248) Pseudomonas putida GB-1 5869925 YP_001668374.1 CDS PputGB1_2137 NC_010322.1 2383346 2383873 R KEGG: pen:PSEEN3212 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2383346..2383873) Pseudomonas putida GB-1 5869926 YP_001668375.1 CDS PputGB1_2138 NC_010322.1 2384099 2384458 R KEGG: pen:PSEEN3211 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit complement(2384099..2384458) Pseudomonas putida GB-1 5869927 YP_001668376.1 CDS PputGB1_2139 NC_010322.1 2384805 2386106 D PFAM: outer membrane porin; KEGG: pen:PSEEN3209 OprD-like porin; outer membrane porin 2384805..2386106 Pseudomonas putida GB-1 5869928 YP_001668377.1 CDS PputGB1_2140 NC_010322.1 2386174 2386923 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2386174..2386923 Pseudomonas putida GB-1 5869929 YP_001668378.1 CDS PputGB1_2141 NC_010322.1 2386939 2387289 R PFAM: response regulator receiver; KEGG: pen:PSEEN3207 response regulator; response regulator receiver protein complement(2386939..2387289) Pseudomonas putida GB-1 5869930 YP_001668379.1 CDS PputGB1_2142 NC_010322.1 2387556 2391005 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: pen:PSEEN3205 sensor histidine kinase/response regulator (hybrid); multi-sensor hybrid histidine kinase 2387556..2391005 Pseudomonas putida GB-1 5869931 YP_001668380.1 CDS PputGB1_2143 NC_010322.1 2391002 2391823 D PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3204 chemotaxis protein methyltransferase, CheR-like; chemotaxis protein CheR 2391002..2391823 Pseudomonas putida GB-1 5869932 YP_001668381.1 CDS PputGB1_2144 NC_010322.1 2391820 2392395 D PFAM: CheB methylesterase; KEGG: pen:PSEEN3203 methylesterase, CheB-like; CheB methylesterase 2391820..2392395 Pseudomonas putida GB-1 5869933 YP_001668382.1 CDS PputGB1_2145 NC_010322.1 2392389 2393615 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3202 response regulator/sensor histidine kinase (hybrid); response regulator receiver sensor signal transduction histidine kinase 2392389..2393615 Pseudomonas putida GB-1 5869934 YP_001668383.1 CDS PputGB1_2146 NC_010322.1 2393660 2394037 D PFAM: response regulator receiver; KEGG: pen:PSEEN3201 response regulator; response regulator receiver protein 2393660..2394037 Pseudomonas putida GB-1 5869935 YP_001668384.1 CDS PputGB1_2147 NC_010322.1 2394188 2394769 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN3199 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2394188..2394769) Pseudomonas putida GB-1 5869936 YP_001668385.1 CDS PputGB1_2148 NC_010322.1 2394782 2395630 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pen:PSEEN3198 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(2394782..2395630) Pseudomonas putida GB-1 5869937 YP_001668386.1 CDS PputGB1_2149 NC_010322.1 2395644 2396828 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(2395644..2396828) Pseudomonas putida GB-1 5869938 YP_001668387.1 CDS PputGB1_2150 NC_010322.1 2396999 2398018 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3196 transcriptional regulator, AraC family; AraC family transcriptional regulator 2396999..2398018 Pseudomonas putida GB-1 5869939 YP_001668388.1 CDS PputGB1_2151 NC_010322.1 2398023 2398460 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN3195 hypothetical protein; alkylhydroperoxidase complement(2398023..2398460) Pseudomonas putida GB-1 5869940 YP_001668389.1 CDS PputGB1_2152 NC_010322.1 2398661 2399857 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3193 transporter, MFS family; major facilitator superfamily transporter 2398661..2399857 Pseudomonas putida GB-1 5869941 YP_001668390.1 CDS PputGB1_2153 NC_010322.1 2399850 2401358 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3192 transcriptional regulator, GntR family; transcriptional regulator complement(2399850..2401358) Pseudomonas putida GB-1 5869942 YP_001668391.1 CDS PputGB1_2154 NC_010322.1 2401367 2401705 R KEGG: pen:PSEEN3191 hypothetical protein; hypothetical protein complement(2401367..2401705) Pseudomonas putida GB-1 5869943 YP_001668392.1 CDS PputGB1_2155 NC_010322.1 2401902 2402480 D PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3190 NAD(P)H-flavin oxidoreductase; flavin reductase domain-containing protein 2401902..2402480 Pseudomonas putida GB-1 5869944 YP_001668393.1 CDS PputGB1_2156 NC_010322.1 2402566 2402964 R PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN3189 hypothetical protein; hypothetical protein complement(2402566..2402964) Pseudomonas putida GB-1 5869945 YP_001668394.1 CDS glcF NC_010322.1 2402957 2404192 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN3188 glycolate oxidase subunit, FeS protein; glycolate oxidase iron-sulfur subunit complement(2402957..2404192) Pseudomonas putida GB-1 5869946 YP_001668395.1 CDS glcE NC_010322.1 2404202 2405254 R PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3187 glycolate oxidase, subunit GlcE; glycolate oxidase FAD binding subunit complement(2404202..2405254) Pseudomonas putida GB-1 5869947 YP_001668396.1 CDS PputGB1_2159 NC_010322.1 2405254 2406753 R TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3186 glycolate oxidase, FAD-linked subunit; glycolate oxidase subunit GlcD complement(2405254..2406753) Pseudomonas putida GB-1 5869948 YP_001668397.1 CDS PputGB1_2160 NC_010322.1 2406948 2407712 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pau:PA14_70710 glc operon transcriptional activator; DNA-binding transcriptional regulator GlcC 2406948..2407712 Pseudomonas putida GB-1 5869949 YP_001668398.1 CDS PputGB1_2161 NC_010322.1 2407774 2408091 R TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2379 hypothetical protein; hypothetical protein complement(2407774..2408091) Pseudomonas putida GB-1 5869950 YP_001668399.1 CDS PputGB1_2162 NC_010322.1 2408253 2409353 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pfo:Pfl_3918 sigma-54 specific transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator complement(2408253..2409353) Pseudomonas putida GB-1 5869951 YP_001668400.1 CDS PputGB1_2163 NC_010322.1 2409363 2410550 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl_3917 acyl-CoA dehydrogenase-like; type 2 acyl-CoA dehydrogenase complement(2409363..2410550) Pseudomonas putida GB-1 5869952 YP_001668401.1 CDS PputGB1_2164 NC_010322.1 2410560 2411120 R PFAM: NADPH-dependent FMN reductase; KEGG: pfo:Pfl_3915 FMN reductase; FMN reductase complement(2410560..2411120) Pseudomonas putida GB-1 5869953 YP_001668402.1 CDS PputGB1_2165 NC_010322.1 2411418 2413385 R KEGG: pen:PSEEN2489 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(2411418..2413385) Pseudomonas putida GB-1 5869954 YP_001668403.1 CDS PputGB1_2166 NC_010322.1 2413874 2415214 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3480 major facilitator family transporter; major facilitator superfamily transporter 2413874..2415214 Pseudomonas putida GB-1 5869955 YP_001668404.1 CDS PputGB1_2167 NC_010322.1 2415318 2416571 D PFAM: outer membrane porin; KEGG: pfl:PFL_3474 BenF-like porin; outer membrane porin 2415318..2416571 Pseudomonas putida GB-1 5869956 YP_001668405.1 CDS PputGB1_2168 NC_010322.1 2416682 2417395 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3473 transcriptional regulator VanR; GntR family transcriptional regulator 2416682..2417395 Pseudomonas putida GB-1 5869957 YP_001668406.1 CDS PputGB1_2169 NC_010322.1 2417402 2418352 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: psp:PSPPH_2474 vanillate monooxygenase, oxidoreductase subunit; ferredoxin complement(2417402..2418352) Pseudomonas putida GB-1 5869958 YP_001668407.1 CDS PputGB1_2170 NC_010322.1 2418365 2419432 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein complement(2418365..2419432) Pseudomonas putida GB-1 5869959 YP_001668408.1 CDS PputGB1_2171 NC_010322.1 2419646 2420311 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2026 ABC transporter-like; ABC transporter-like protein 2419646..2420311 Pseudomonas putida GB-1 5869960 YP_001668409.1 CDS PputGB1_2172 NC_010322.1 2420311 2422773 D PFAM: protein of unknown function DUF214; KEGG: pfl:PFL_2229 ABC transporter, permease protein, putative; hypothetical protein 2420311..2422773 Pseudomonas putida GB-1 5869961 YP_001668410.1 CDS PputGB1_2173 NC_010322.1 2422763 2423818 D KEGG: pfl:PFL_2230 lipoprotein, putative; putative lipoprotein 2422763..2423818 Pseudomonas putida GB-1 5869962 YP_001668411.1 CDS PputGB1_2174 NC_010322.1 2423979 2424725 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfo:Pfl_4449 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2423979..2424725) Pseudomonas putida GB-1 5869963 YP_001668412.1 CDS PputGB1_2175 NC_010322.1 2424825 2425469 D PFAM: regulatory protein TetR; KEGG: pfl:PFL_2706 transcriptional regulator, TetR family; TetR family transcriptional regulator 2424825..2425469 Pseudomonas putida GB-1 5869964 YP_001668413.1 CDS PputGB1_2176 NC_010322.1 2425543 2426259 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_2707 DNA-binding response regulator; two component transcriptional regulator 2425543..2426259 Pseudomonas putida GB-1 5869965 YP_001668414.1 CDS PputGB1_2177 NC_010322.1 2426256 2427032 D SMART: extracellular solute-binding protein family 3; KEGG: pfl:PFL_2708 periplasmic amino acid-binding protein-related protein; extracellular solute-binding protein 2426256..2427032 Pseudomonas putida GB-1 5869966 YP_001668415.1 CDS PputGB1_2178 NC_010322.1 2427029 2429281 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pfl:PFL_2709 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 2427029..2429281 Pseudomonas putida GB-1 5869967 YP_001668416.1 CDS PputGB1_2179 NC_010322.1 2429478 2430884 D PFAM: amino acid permease-associated region; KEGG: pfl:PFL_2710 amino acid transporter, AAT family; amino acid permease-associated protein 2429478..2430884 Pseudomonas putida GB-1 5869968 YP_001668417.1 CDS PputGB1_2180 NC_010322.1 2431318 2432112 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfl:PFL_2711 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase 2431318..2432112 Pseudomonas putida GB-1 5869969 YP_001668418.1 CDS PputGB1_2181 NC_010322.1 2432145 2433305 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pae:PA4979 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2432145..2433305 Pseudomonas putida GB-1 5869970 YP_001668419.1 CDS PputGB1_2182 NC_010322.1 2433322 2435439 D KEGG: pfl:PFL_2713 acyl-CoA synthetase, putative; acyl-CoA synthetase 2433322..2435439 Pseudomonas putida GB-1 5869971 YP_001668420.1 CDS PputGB1_2183 NC_010322.1 2435432 2437039 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pap:PSPA7_5710 probable acetolactate synthase large subunit; hypothetical protein 2435432..2437039 Pseudomonas putida GB-1 5869972 YP_001668421.1 CDS alr NC_010322.1 2437074 2438303 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 2437074..2438303 Pseudomonas putida GB-1 5869973 YP_001668422.1 CDS PputGB1_2185 NC_010322.1 2438328 2439518 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pae:PA4976 aspartate transaminase; class I/II aminotransferase 2438328..2439518 Pseudomonas putida GB-1 5869974 YP_001668423.1 CDS PputGB1_2186 NC_010322.1 2439511 2440923 D PFAM: Aldehyde Dehydrogenase; KEGG: cps:CPS_0387 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2439511..2440923 Pseudomonas putida GB-1 5869975 YP_001668424.1 CDS PputGB1_2187 NC_010322.1 2440967 2441668 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pfl:PFL_2716 NAD(P)H dehydrogenase, quinone family; ribosyldihydronicotinamide dehydrogenase 2440967..2441668 Pseudomonas putida GB-1 5869976 YP_001668425.1 CDS PputGB1_2188 NC_010322.1 2441842 2442945 D PFAM: extracellular solute-binding protein family 1; KEGG: pfl:PFL_3466 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 2441842..2442945 Pseudomonas putida GB-1 5869977 YP_001668426.1 CDS PputGB1_2189 NC_010322.1 2442980 2444392 D PFAM: aminotransferase class-III; KEGG: pfl:PFL_3467 hypothetical protein; hypothetical protein 2442980..2444392 Pseudomonas putida GB-1 5869978 YP_001668427.1 CDS PputGB1_2190 NC_010322.1 2444389 2445285 D PFAM: regulatory protein LuxR; KEGG: pfl:PFL_3468 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2444389..2445285 Pseudomonas putida GB-1 5869979 YP_001668428.1 CDS PputGB1_2191 NC_010322.1 2445434 2446960 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pmy:Pmen_2182 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2445434..2446960 Pseudomonas putida GB-1 5869980 YP_001668429.1 CDS PputGB1_2192 NC_010322.1 2446966 2448045 R KEGG: pen:PSEEN2265 sensor box protein; TIGRFAM: PAS sensor protein; PFAM: helix-turn-helix domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; XRE family transcriptional regulator complement(2446966..2448045) Pseudomonas putida GB-1 5869981 YP_001668430.1 CDS PputGB1_2193 NC_010322.1 2448263 2449234 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2129 dioxygenase, beta subunit; ferredoxin complement(2448263..2449234) Pseudomonas putida GB-1 5869982 YP_001668431.1 CDS PputGB1_2194 NC_010322.1 2449313 2450434 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN2130 dioxygenase, alpha subunit; Rieske (2Fe-2S) domain-containing protein complement(2449313..2450434) Pseudomonas putida GB-1 5869983 YP_001668432.1 CDS PputGB1_2195 NC_010322.1 2450556 2452154 R member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter complement(2450556..2452154) Pseudomonas putida GB-1 5869984 YP_001668433.1 CDS PputGB1_2196 NC_010322.1 2452349 2453440 R KEGG: pen:PSEEN2132 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(2452349..2453440) Pseudomonas putida GB-1 5869985 YP_001668434.1 CDS PputGB1_2197 NC_010322.1 2453538 2454449 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2133 transcriptional regulator, LysR family; LysR family transcriptional regulator 2453538..2454449 Pseudomonas putida GB-1 5869986 YP_001668435.1 CDS PputGB1_2198 NC_010322.1 2454488 2454970 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_3639 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2454488..2454970) Pseudomonas putida GB-1 5869987 YP_001668436.1 CDS PputGB1_2199 NC_010322.1 2455095 2456126 D PFAM: histone deacetylase superfamily; KEGG: pfl:PFL_3640 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein 2455095..2456126 Pseudomonas putida GB-1 5869988 YP_001668437.1 CDS PputGB1_2200 NC_010322.1 2456203 2457606 D PFAM: amino acid permease-associated region; KEGG: pfl:PFL_3642 D-serine/D-alanine/glycine transporter; amino acid permease-associated protein 2456203..2457606 Pseudomonas putida GB-1 5869989 YP_001668438.1 CDS PputGB1_2201 NC_010322.1 2457749 2460997 D KEGG: ypi:YpsIP31758_2494 hypothetical protein; hypothetical protein 2457749..2460997 Pseudomonas putida GB-1 5869990 YP_001668439.1 CDS PputGB1_2202 NC_010322.1 2460984 2461805 D KEGG: ypi:YpsIP31758_2493 hypothetical protein; hypothetical protein 2460984..2461805 Pseudomonas putida GB-1 5869991 YP_001668440.1 CDS PputGB1_2203 NC_010322.1 2461838 2462710 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_32200 transcriptional regulator CatR; LysR family transcriptional regulator complement(2461838..2462710) Pseudomonas putida GB-1 5869992 YP_001668441.1 CDS PputGB1_2204 NC_010322.1 2462846 2463967 D TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pen:PSEEN3138 muconate cycloisomerase I (cis,cis-muconate lactonizing enzyme I) (MLE); muconate and chloromuconate cycloisomerase 2462846..2463967 Pseudomonas putida GB-1 5869993 YP_001668442.1 CDS PputGB1_2205 NC_010322.1 2463989 2464279 D KEGG: pen:PSEEN3137 muconolactone delta-isomerase (MIase); TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase 2463989..2464279 Pseudomonas putida GB-1 5869994 YP_001668443.1 CDS PputGB1_2206 NC_010322.1 2464323 2465258 D TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pfo:Pfl_2961 intradiol ring-cleavage dioxygenase; catechol 1,2-dioxygenase 2464323..2465258 Pseudomonas putida GB-1 5869995 YP_001668444.1 CDS PputGB1_2207 NC_010322.1 2465777 2466946 D PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: mmw:Mmwyl1_1823 acyl-CoA dehydrogenase type 2 domain; type 2 acyl-CoA dehydrogenase 2465777..2466946 Pseudomonas putida GB-1 5869996 YP_001668445.1 CDS PputGB1_2208 NC_010322.1 2466964 2467326 D KEGG: mmw:Mmwyl1_1824 hypothetical protein; hypothetical protein 2466964..2467326 Pseudomonas putida GB-1 5869997 YP_001668446.1 CDS PputGB1_2209 NC_010322.1 2467343 2468626 D PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: mmw:Mmwyl1_1826 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2467343..2468626 Pseudomonas putida GB-1 5869998 YP_001668447.1 CDS PputGB1_2210 NC_010322.1 2468623 2469102 D PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: rpb:RPB_3896 aromatic-ring-hydroxylating dioxygenase, beta subunit; aromatic-ring-hydroxylating dioxygenase subunit beta 2468623..2469102 Pseudomonas putida GB-1 5869999 YP_001668448.1 CDS PputGB1_2211 NC_010322.1 2469113 2469853 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mmw:Mmwyl1_1828 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2469113..2469853 Pseudomonas putida GB-1 5870000 YP_001668449.1 CDS PputGB1_2212 NC_010322.1 2469901 2470860 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mmw:Mmwyl1_1829 ferredoxin; ferredoxin 2469901..2470860 Pseudomonas putida GB-1 5870001 YP_001668450.1 CDS PputGB1_2213 NC_010322.1 2470872 2471369 D PFAM: flavin reductase domain protein FMN-binding; KEGG: pfo:Pfl_0712 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 2470872..2471369 Pseudomonas putida GB-1 5870002 YP_001668451.1 CDS PputGB1_2214 NC_010322.1 2471385 2471864 R PFAM: regulatory protein MarR; KEGG: mmw:Mmwyl1_1816 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2471385..2471864) Pseudomonas putida GB-1 5870003 YP_001668452.1 CDS PputGB1_2215 NC_010322.1 2472005 2473144 D PFAM: Amidase; KEGG: xau:Xaut_1052 amidase; amidase 2472005..2473144 Pseudomonas putida GB-1 5870004 YP_001668453.1 CDS PputGB1_2216 NC_010322.1 2473137 2473649 D KEGG: mmw:Mmwyl1_1825 hypothetical protein; hypothetical protein 2473137..2473649 Pseudomonas putida GB-1 5870005 YP_001668454.1 CDS PputGB1_2217 NC_010322.1 2473801 2475120 R KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein complement(2473801..2475120) Pseudomonas putida GB-1 5870006 YP_001668455.1 CDS PputGB1_2218 NC_010322.1 2475299 2475697 R PFAM: cytochrome c class I; KEGG: rpe:RPE_3768 cytochrome c, class I; cytochrome c class I complement(2475299..2475697) Pseudomonas putida GB-1 5870007 YP_001668456.1 CDS PputGB1_2219 NC_010322.1 2475822 2476736 R activator of genes involved in phenylacetic acid catabolism; DNA-binding transcriptional activator FeaR complement(2475822..2476736) Pseudomonas putida GB-1 5870008 YP_001668457.1 CDS PputGB1_2220 NC_010322.1 2477061 2477579 R KEGG: mpt:Mpe_A2652 hypothetical protein; hypothetical protein complement(2477061..2477579) Pseudomonas putida GB-1 5870009 YP_001668458.1 CDS PputGB1_2221 NC_010322.1 2477584 2478105 R PFAM: methylamine dehydrogenase light chain domain protein; KEGG: pat:Patl_0157 twin-arginine translocation pathway signal; amine dehydrogenase complement(2477584..2478105) Pseudomonas putida GB-1 5870010 YP_001668459.1 CDS PputGB1_2222 NC_010322.1 2478120 2478761 R TIGRFAM: methylamine dehydrogenase accessory protein MauD; PFAM: Redoxin domain protein; KEGG: bam:Bamb_4470 methylamine dehydrogenase accessory protein MauD; methylamine dehydrogenase accessory protein MauD complement(2478120..2478761) Pseudomonas putida GB-1 5870011 YP_001668460.1 CDS PputGB1_2223 NC_010322.1 2478766 2479302 R PFAM: methylamine utilisation MauE; KEGG: azo:azo2259 putative methylamine utilization protein MauE; methylamine utilisation MauE complement(2478766..2479302) Pseudomonas putida GB-1 5870012 YP_001668461.1 CDS PputGB1_2224 NC_010322.1 2479318 2480469 R PFAM: methylamine dehydrogenase heavy subunit; KEGG: bam:Bamb_4472 amine dehydrogenase; amine dehydrogenase complement(2479318..2480469) Pseudomonas putida GB-1 5870013 YP_001668462.1 CDS PputGB1_2225 NC_010322.1 2480672 2482159 D PFAM: Aldehyde Dehydrogenase; KEGG: bte:BTH_II0330 phenylacetaldehyde dehydrogenase; aldehyde dehydrogenase 2480672..2482159 Pseudomonas putida GB-1 5870014 YP_001668463.1 CDS PputGB1_2226 NC_010322.1 2482263 2482757 D KEGG: pen:PSEEN2309 hypothetical protein; hypothetical protein 2482263..2482757 Pseudomonas putida GB-1 5870015 YP_001668464.1 CDS PputGB1_2227 NC_010322.1 2482894 2484990 D KEGG: pen:PSEEN2310 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2482894..2484990 Pseudomonas putida GB-1 5870016 YP_001668465.1 CDS PputGB1_2228 NC_010322.1 2485033 2485857 R PFAM: aldo/keto reductase; KEGG: pfl:PFL_5394 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(2485033..2485857) Pseudomonas putida GB-1 5870017 YP_001668466.1 CDS PputGB1_2229 NC_010322.1 2486104 2486982 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN2407 hypothetical protein; hypothetical protein 2486104..2486982 Pseudomonas putida GB-1 5870018 YP_001668467.1 CDS PputGB1_2230 NC_010322.1 2486994 2487896 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1962 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2486994..2487896) Pseudomonas putida GB-1 5870019 YP_001668468.1 CDS PputGB1_2231 NC_010322.1 2488276 2490531 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pen:PSEEN2372 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 2488276..2490531 Pseudomonas putida GB-1 5870020 YP_001668469.1 CDS PputGB1_2232 NC_010322.1 2490793 2492004 D PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; creatinase 2490793..2492004 Pseudomonas putida GB-1 5870021 YP_001668470.1 CDS PputGB1_2233 NC_010322.1 2492124 2493458 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1; general substrate transporter 2492124..2493458 Pseudomonas putida GB-1 5870022 YP_001668471.1 CDS PputGB1_2234 NC_010322.1 2493527 2494534 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pmy:Pmen_0490 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2493527..2494534) Pseudomonas putida GB-1 5870023 YP_001668472.1 CDS pssA NC_010322.1 2494715 2496043 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2494715..2496043 Pseudomonas putida GB-1 5870024 YP_001668473.1 CDS PputGB1_2236 NC_010322.1 2496053 2497012 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3353 hypothetical protein; hypothetical protein complement(2496053..2497012) Pseudomonas putida GB-1 5870025 YP_001668474.1 CDS PputGB1_2237 NC_010322.1 2497114 2498055 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3352 transcriptional regulator, LysR family; LysR family transcriptional regulator 2497114..2498055 Pseudomonas putida GB-1 5870026 YP_001668475.1 CDS PputGB1_2238 NC_010322.1 2498000 2498347 R KEGG: pap:PSPA7_3033 hypothetical protein; hypothetical protein complement(2498000..2498347) Pseudomonas putida GB-1 5870027 YP_001668476.1 CDS PputGB1_2239 NC_010322.1 2498632 2499798 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfo:Pfl_2170 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 2498632..2499798 Pseudomonas putida GB-1 5870028 YP_001668477.1 CDS PputGB1_2240 NC_010322.1 2500586 2500906 R KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein complement(2500586..2500906) Pseudomonas putida GB-1 5870029 YP_001668478.1 CDS PputGB1_2241 NC_010322.1 2501003 2502376 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2055 decarboxylase; hypothetical protein complement(2501003..2502376) Pseudomonas putida GB-1 5870030 YP_001668479.1 CDS PputGB1_2242 NC_010322.1 2502539 2503600 R PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A1977 conserved hypothetical protein 698; hypothetical protein complement(2502539..2503600) Pseudomonas putida GB-1 5870031 YP_001668480.1 CDS PputGB1_2243 NC_010322.1 2503711 2504619 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1978 transcriptional regulator, LysR family; LysR family transcriptional regulator 2503711..2504619 Pseudomonas putida GB-1 5870032 YP_001668481.1 CDS PputGB1_2244 NC_010322.1 2504793 2505665 D KEGG: ang:An14g06150 hypothetical protein Pfam: RHS_repeat UPF0126 PE D-aminoacyl_C; hypothetical protein 2504793..2505665 Pseudomonas putida GB-1 5870033 YP_001668482.1 CDS PputGB1_2245 NC_010322.1 2505737 2506666 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bbr:BB1891 hypothetical protein; hypothetical protein complement(2505737..2506666) Pseudomonas putida GB-1 5870034 YP_001668483.1 CDS PputGB1_2246 NC_010322.1 2506962 2507555 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pmy:Pmen_3469 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2506962..2507555) Pseudomonas putida GB-1 5870035 YP_001668484.1 CDS PputGB1_2247 NC_010322.1 2507834 2509168 D TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region; KEGG: pmy:Pmen_3468 glutamine synthetase, catalytic region; glutamine synthetase 2507834..2509168 Pseudomonas putida GB-1 5870036 YP_001668485.1 CDS PputGB1_2248 NC_010322.1 2509235 2510140 D PFAM: glutamine amidotransferase class-II; KEGG: pmy:Pmen_3467 glutamine amidotransferase, class-II; glutamine amidotransferase 2509235..2510140 Pseudomonas putida GB-1 5870037 YP_001668486.1 CDS PputGB1_2249 NC_010322.1 2510168 2510842 D PFAM: glutamate synthase alpha subunit domain protein; KEGG: pmy:Pmen_3466 glutamate synthase, alpha subunit domain protein; glutamate synthase subunit alpha 2510168..2510842 Pseudomonas putida GB-1 5870038 YP_001668487.1 CDS PputGB1_2250 NC_010322.1 2510858 2512183 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: pmy:Pmen_3465 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 2510858..2512183 Pseudomonas putida GB-1 5870039 YP_001668488.1 CDS PputGB1_2251 NC_010322.1 2512323 2513627 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pst:PSPTO_2586 ammonium transporter; ammonium transporter 2512323..2513627 Pseudomonas putida GB-1 5870040 YP_001668489.1 CDS PputGB1_2252 NC_010322.1 2513691 2515103 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3342 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease complement(2513691..2515103) Pseudomonas putida GB-1 5870041 YP_001668490.1 CDS PputGB1_2253 NC_010322.1 2515455 2515907 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3341 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2515455..2515907) Pseudomonas putida GB-1 5870042 YP_001668491.1 CDS PputGB1_2254 NC_010322.1 2516018 2516632 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3340 transporter, LysE family; lysine exporter protein LysE/YggA 2516018..2516632 Pseudomonas putida GB-1 5870043 YP_001668492.1 CDS PputGB1_2255 NC_010322.1 2516699 2517331 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2025 transporter, LysE family; lysine exporter protein LysE/YggA 2516699..2517331 Pseudomonas putida GB-1 5870044 YP_001668493.1 CDS PputGB1_2256 NC_010322.1 2517353 2519536 R PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2027 sensor histidine kinase/response regulator hybrid; GAF sensor hybrid histidine kinase complement(2517353..2519536) Pseudomonas putida GB-1 5870045 YP_001668494.1 CDS PputGB1_2257 NC_010322.1 2519637 2520809 R KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; peptidyl-Asp metalloendopeptidase complement(2519637..2520809) Pseudomonas putida GB-1 5870046 YP_001668495.1 CDS PputGB1_2258 NC_010322.1 2520893 2521456 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2028 hydrolase, MutT/NUDIX family; NUDIX hydrolase complement(2520893..2521456) Pseudomonas putida GB-1 5870047 YP_001668496.1 CDS PputGB1_2259 NC_010322.1 2521459 2522211 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2029 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2521459..2522211) Pseudomonas putida GB-1 5870048 YP_001668497.1 CDS PputGB1_2260 NC_010322.1 2522300 2522689 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3235 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(2522300..2522689) Pseudomonas putida GB-1 5870049 YP_001668498.1 CDS PputGB1_2261 NC_010322.1 2522778 2523263 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2031 oxidoreductase; flavin reductase domain-containing protein complement(2522778..2523263) Pseudomonas putida GB-1 5870050 YP_001668499.1 CDS PputGB1_2262 NC_010322.1 2523277 2524758 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2032 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2523277..2524758) Pseudomonas putida GB-1 5870051 YP_001668500.1 CDS PputGB1_2263 NC_010322.1 2524755 2525588 R PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: pen:PSEEN2033 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(2524755..2525588) Pseudomonas putida GB-1 5870052 YP_001668501.1 CDS PputGB1_2264 NC_010322.1 2525657 2526253 R PFAM: protein of unknown function DUF1185; KEGG: pen:PSEEN2034 hypothetical protein; hypothetical protein complement(2525657..2526253) Pseudomonas putida GB-1 5870053 YP_001668502.1 CDS PputGB1_2265 NC_010322.1 2526558 2527598 R PFAM: luciferase family protein; KEGG: pen:PSEEN2035 monooxygenase, bacterial luciferase family; luciferase family protein complement(2526558..2527598) Pseudomonas putida GB-1 5870054 YP_001668503.1 CDS PputGB1_2266 NC_010322.1 2527674 2528159 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2036 oxidoreductase; flavin reductase domain-containing protein complement(2527674..2528159) Pseudomonas putida GB-1 5870055 YP_001668504.1 CDS PputGB1_2267 NC_010322.1 2528476 2529882 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN2038 permease, cytosine/purines, uracil, thiamine, allantoin permease family; cytosine/purines uracil thiamine allantoin permease 2528476..2529882 Pseudomonas putida GB-1 5870056 YP_001668505.1 CDS PputGB1_2268 NC_010322.1 2529935 2531560 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2039 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(2529935..2531560) Pseudomonas putida GB-1 5870057 YP_001668506.1 CDS PputGB1_2269 NC_010322.1 2531792 2532988 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2040 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2531792..2532988) Pseudomonas putida GB-1 5870058 YP_001668507.1 CDS PputGB1_2270 NC_010322.1 2533501 2534880 D PFAM: flavin-containing monooxygenase FMO; KEGG: pmy:Pmen_3459 flavin-containing monooxygenase; flavin-containing monooxygenase FMO 2533501..2534880 Pseudomonas putida GB-1 5870059 YP_001668508.1 CDS PputGB1_2271 NC_010322.1 2534998 2535537 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN2041 transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2534998..2535537 Pseudomonas putida GB-1 5870060 YP_001668509.1 CDS PputGB1_2272 NC_010322.1 2535563 2536474 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1921 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2535563..2536474) Pseudomonas putida GB-1 5870061 YP_001668510.1 CDS PputGB1_2273 NC_010322.1 2536511 2537137 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1922 alkylhydroperoxidase, AhpD domain protein; alkylhydroperoxidase 2536511..2537137 Pseudomonas putida GB-1 5870062 YP_001668511.1 CDS PputGB1_2274 NC_010322.1 2537237 2538301 D KEGG: pen:PSEEN1923 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2537237..2538301 Pseudomonas putida GB-1 5870063 YP_001668512.1 CDS PputGB1_2275 NC_010322.1 2538298 2539119 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1924 ABC transporter, ATP-binding protein; ABC transporter-like protein 2538298..2539119 Pseudomonas putida GB-1 5870064 YP_001668513.1 CDS PputGB1_2276 NC_010322.1 2539106 2540311 D KEGG: pen:PSEEN1925 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein 2539106..2540311 Pseudomonas putida GB-1 5870065 YP_001668514.1 CDS PputGB1_2277 NC_010322.1 2540311 2541066 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1926 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2540311..2541066 Pseudomonas putida GB-1 5870066 YP_001668515.1 CDS PputGB1_2278 NC_010322.1 2541115 2541801 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1928 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2541115..2541801) Pseudomonas putida GB-1 5870067 YP_001668516.1 CDS PputGB1_2279 NC_010322.1 2541882 2542823 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(2541882..2542823) Pseudomonas putida GB-1 5870068 YP_001668517.1 CDS PputGB1_2280 NC_010322.1 2542931 2543812 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1930 transcriptional regulator, LysR family; LysR family transcriptional regulator 2542931..2543812 Pseudomonas putida GB-1 5870069 YP_001668518.1 CDS PputGB1_2281 NC_010322.1 2543836 2544042 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pen:PSEEN1931 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(2543836..2544042) Pseudomonas putida GB-1 5870070 YP_001668519.1 CDS PputGB1_2282 NC_010322.1 2544061 2544795 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1932 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2544061..2544795) Pseudomonas putida GB-1 5870071 YP_001668520.1 CDS PputGB1_2283 NC_010322.1 2544920 2545840 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1933 transcriptional regulator, LysR family; LysR family transcriptional regulator 2544920..2545840 Pseudomonas putida GB-1 5870072 YP_001668521.1 CDS PputGB1_2284 NC_010322.1 2545935 2546207 D KEGG: pen:PSEEN1934 hypothetical protein; hypothetical protein 2545935..2546207 Pseudomonas putida GB-1 5870073 YP_001668522.1 CDS PputGB1_2285 NC_010322.1 2546269 2546919 R PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN1937 hypothetical protein; SH3 type 3 domain-containing protein complement(2546269..2546919) Pseudomonas putida GB-1 5870074 YP_001668523.1 CDS PputGB1_2286 NC_010322.1 2547190 2548533 D PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 2547190..2548533 Pseudomonas putida GB-1 5870075 YP_001668524.1 CDS PputGB1_2287 NC_010322.1 2548665 2549144 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pen:PSEEN2353 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 2548665..2549144 Pseudomonas putida GB-1 5870076 YP_001668525.1 CDS PputGB1_2288 NC_010322.1 2549230 2550978 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: nca:Noca_2609 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(2549230..2550978) Pseudomonas putida GB-1 5870077 YP_001668526.1 CDS PputGB1_2289 NC_010322.1 2551295 2551612 D hypothetical protein 2551295..2551612 Pseudomonas putida GB-1 5870078 YP_001668527.1 CDS PputGB1_2290 NC_010322.1 2551621 2551821 D PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN3298 hypothetical protein; hypothetical protein 2551621..2551821 Pseudomonas putida GB-1 5870079 YP_001668528.1 CDS PputGB1_2291 NC_010322.1 2551871 2552512 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2174 transporter, LysE family; lysine exporter protein LysE/YggA 2551871..2552512 Pseudomonas putida GB-1 5870080 YP_001668529.1 CDS PputGB1_2292 NC_010322.1 2552720 2553508 D SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2979 hypothetical protein; extracellular solute-binding protein 2552720..2553508 Pseudomonas putida GB-1 5870081 YP_001668530.1 CDS PputGB1_2293 NC_010322.1 2553526 2554545 R PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN2169 hypothetical protein; hypothetical protein complement(2553526..2554545) Pseudomonas putida GB-1 5870082 YP_001668531.1 CDS PputGB1_2294 NC_010322.1 2554585 2555946 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2170 cytochrome c; gluconate 2-dehydrogenase complement(2554585..2555946) Pseudomonas putida GB-1 5870083 YP_001668532.1 CDS PputGB1_2295 NC_010322.1 2555965 2558214 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: pen:PSEEN2171 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(2555965..2558214) Pseudomonas putida GB-1 5870084 YP_001668533.1 CDS PputGB1_2296 NC_010322.1 2558214 2558669 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2172 isoquinoline 1-oxidoreductase, alpha subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2558214..2558669) Pseudomonas putida GB-1 5870085 YP_001668534.1 CDS PputGB1_2297 NC_010322.1 2558928 2561114 D PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: pen:PSEEN3294 hypothetical protein; hypothetical protein 2558928..2561114 Pseudomonas putida GB-1 5870086 YP_001668535.1 CDS PputGB1_2298 NC_010322.1 2561138 2562028 R hypothetical protein complement(2561138..2562028) Pseudomonas putida GB-1 5870087 YP_001668536.1 CDS PputGB1_2299 NC_010322.1 2562031 2565021 R hypothetical protein complement(2562031..2565021) Pseudomonas putida GB-1 5870088 YP_001668537.1 CDS PputGB1_2300 NC_010322.1 2565324 2565614 R KEGG: pfo:Pfl_2311 hypothetical protein; hypothetical protein complement(2565324..2565614) Pseudomonas putida GB-1 5870089 YP_001668538.1 CDS PputGB1_2301 NC_010322.1 2565779 2566207 D KEGG: pst:PSPTO_3688 hypothetical protein; hypothetical protein 2565779..2566207 Pseudomonas putida GB-1 5870090 YP_001668539.1 CDS PputGB1_2302 NC_010322.1 2566204 2567496 D KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 2566204..2567496 Pseudomonas putida GB-1 5870091 YP_001668540.1 CDS PputGB1_2303 NC_010322.1 2567564 2569696 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2610 putative ferrichrome-iron TonB-dependent receptor; TonB-dependent siderophore receptor complement(2567564..2569696) Pseudomonas putida GB-1 5870092 YP_001668541.1 CDS PputGB1_2304 NC_010322.1 2569922 2570503 D KEGG: pen:PSEEN2168 hypothetical protein; hypothetical protein 2569922..2570503 Pseudomonas putida GB-1 5870093 YP_001668542.1 CDS PputGB1_2305 NC_010322.1 2570508 2571272 R KEGG: dac:Daci_3654 hypothetical protein; hypothetical protein complement(2570508..2571272) Pseudomonas putida GB-1 5870094 YP_001668543.1 CDS PputGB1_2306 NC_010322.1 2571475 2571993 D PFAM: protein of unknown function DUF606; KEGG: dac:Daci_4323 protein of unknown function DUF606; hypothetical protein 2571475..2571993 Pseudomonas putida GB-1 5870095 YP_001668544.1 CDS PputGB1_2307 NC_010322.1 2571994 2572902 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_4324 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2571994..2572902) Pseudomonas putida GB-1 5870096 YP_001668545.1 CDS PputGB1_2308 NC_010322.1 2573041 2574255 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pfl:PFL_6147 YeeE/YedE family protein; hypothetical protein 2573041..2574255 Pseudomonas putida GB-1 5870097 YP_001668546.1 CDS PputGB1_2309 NC_010322.1 2574369 2575343 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_5626 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 2574369..2575343 Pseudomonas putida GB-1 5870098 YP_001668547.1 CDS PputGB1_2310 NC_010322.1 2575385 2576305 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2681 probable transcriptional regulator; LysR family transcriptional regulator 2575385..2576305 Pseudomonas putida GB-1 5870099 YP_001668548.1 CDS PputGB1_2311 NC_010322.1 2576385 2576714 R KEGG: pen:PSEEN2652 hypothetical protein; hypothetical protein complement(2576385..2576714) Pseudomonas putida GB-1 5870100 YP_001668549.1 CDS PputGB1_2312 NC_010322.1 2576789 2577439 R KEGG: pen:PSEEN2653 hypothetical protein; hypothetical protein complement(2576789..2577439) Pseudomonas putida GB-1 5870101 YP_001668550.1 CDS PputGB1_2313 NC_010322.1 2577639 2578388 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2654 transcriptional regulator, GntR family; GntR family transcriptional regulator 2577639..2578388 Pseudomonas putida GB-1 5870102 YP_001668551.1 CDS PputGB1_2314 NC_010322.1 2578459 2580039 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2655 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase complement(2578459..2580039) Pseudomonas putida GB-1 5870103 YP_001668552.1 CDS PputGB1_2315 NC_010322.1 2580131 2581684 R KEGG: pen:PSEEN2656 D-galactarate dehydrogenase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(2580131..2581684) Pseudomonas putida GB-1 5870104 YP_001668553.1 CDS PputGB1_2316 NC_010322.1 2581763 2583127 R TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2657 D-galactonate permease; d-galactonate transporter complement(2581763..2583127) Pseudomonas putida GB-1 5870105 YP_001668554.1 CDS PputGB1_2317 NC_010322.1 2583232 2584143 R catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase complement(2583232..2584143) Pseudomonas putida GB-1 5870106 YP_001668555.1 CDS PputGB1_2318 NC_010322.1 2584482 2585291 R PFAM: peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26 complement(2584482..2585291) Pseudomonas putida GB-1 5870107 YP_001668556.1 CDS PputGB1_2319 NC_010322.1 2585750 2586532 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2663 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2585750..2586532) Pseudomonas putida GB-1 5870108 YP_001668557.1 CDS PputGB1_2320 NC_010322.1 2586555 2587799 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2664 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase complement(2586555..2587799) Pseudomonas putida GB-1 5870109 YP_001668558.1 CDS PputGB1_2321 NC_010322.1 2587816 2588526 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2665 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(2587816..2588526) Pseudomonas putida GB-1 5870110 YP_001668559.1 CDS PputGB1_2322 NC_010322.1 2588523 2589242 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2666 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(2588523..2589242) Pseudomonas putida GB-1 5870111 YP_001668560.1 CDS PputGB1_2323 NC_010322.1 2589416 2590168 R PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2667 amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(2589416..2590168) Pseudomonas putida GB-1 5870112 YP_001668561.1 CDS PputGB1_2324 NC_010322.1 2590191 2591063 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN2668 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(2590191..2591063) Pseudomonas putida GB-1 5870113 YP_001668562.1 CDS PputGB1_2325 NC_010322.1 2591205 2592230 D PFAM: Malate/L-lactate dehydrogenase; KEGG: pen:PSEEN2669 malate dehydrogenase; malate/L-lactate dehydrogenase 2591205..2592230 Pseudomonas putida GB-1 5870114 YP_001668563.1 CDS PputGB1_2326 NC_010322.1 2592360 2593556 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2592360..2593556 Pseudomonas putida GB-1 5870115 YP_001668564.1 CDS PputGB1_2327 NC_010322.1 2593853 2595133 D PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: pen:PSEEN2671 serine transport protein; aromatic amino acid permease 2593853..2595133 Pseudomonas putida GB-1 5870116 YP_001668565.1 CDS PputGB1_2328 NC_010322.1 2595301 2595801 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2672 thiol peroxidase; redoxin domain-containing protein 2595301..2595801 Pseudomonas putida GB-1 5870117 YP_001668566.1 CDS PputGB1_2329 NC_010322.1 2596020 2597330 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: pen:PSEEN2673 multidrug resistance efflux pump; membrane fusion protein; RND family efflux transporter MFP subunit 2596020..2597330 Pseudomonas putida GB-1 5870118 YP_001668567.1 CDS PputGB1_2330 NC_010322.1 2597327 2600425 D PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2674 multidrug resistance efflux transporter; acriflavin resistance protein 2597327..2600425 Pseudomonas putida GB-1 5870119 YP_001668568.1 CDS PputGB1_2331 NC_010322.1 2600422 2603529 D PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2675 multidrug resistance efflux pump; acriflavin resistance protein 2600422..2603529 Pseudomonas putida GB-1 5870120 YP_001668569.1 CDS PputGB1_2332 NC_010322.1 2603526 2605016 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2676 outer membrane protein precursor; RND efflux system outer membrane lipoprotein 2603526..2605016 Pseudomonas putida GB-1 5870121 YP_001668570.1 CDS PputGB1_2333 NC_010322.1 2605283 2607370 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN2858 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2605283..2607370 Pseudomonas putida GB-1 5870122 YP_001668571.1 CDS PputGB1_2334 NC_010322.1 2607367 2607627 R PFAM: protein of unknown function DUF1652; KEGG: pfl:PFL_3228 hypothetical protein; hypothetical protein complement(2607367..2607627) Pseudomonas putida GB-1 5870123 YP_001668572.1 CDS PputGB1_2335 NC_010322.1 2607898 2608545 R PFAM: protein of unknown function DUF1345; KEGG: pen:PSEEN3002 hypothetical protein; hypothetical protein complement(2607898..2608545) Pseudomonas putida GB-1 5870124 YP_001668573.1 CDS PputGB1_2336 NC_010322.1 2608714 2610351 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2608714..2610351 Pseudomonas putida GB-1 5870125 YP_001668574.1 CDS PputGB1_2337 NC_010322.1 2610430 2610942 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psb:Psyr_2580 sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 factor 2610430..2610942 Pseudomonas putida GB-1 5870126 YP_001668575.1 CDS PputGB1_2338 NC_010322.1 2610939 2611883 D PFAM: FecR protein; KEGG: psp:PSPPH_2748 PupR protein; anti-FecI sigma factor FecR 2610939..2611883 Pseudomonas putida GB-1 5870127 YP_001668576.1 CDS PputGB1_2339 NC_010322.1 2611950 2614352 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_2749 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2611950..2614352 Pseudomonas putida GB-1 5870128 YP_001668577.1 CDS PputGB1_2340 NC_010322.1 2614634 2619460 D KEGG: pen:PSEEN1853 hypothetical protein; hypothetical protein 2614634..2619460 Pseudomonas putida GB-1 5870129 YP_001668578.1 CDS PputGB1_2342 NC_010322.1 2620062 2621000 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1436 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2620062..2621000) Pseudomonas putida GB-1 5870131 YP_001668579.1 CDS PputGB1_2343 NC_010322.1 2621149 2621976 D PFAM: amidohydrolase 2; KEGG: pna:Pnap_1548 amidohydrolase 2; amidohydrolase 2 2621149..2621976 Pseudomonas putida GB-1 5870132 YP_001668580.1 CDS PputGB1_2344 NC_010322.1 2622019 2623368 D PFAM: major facilitator superfamily MFS_1; KEGG: bpd:BURPS668_A0581 probable glucarate transporter; major facilitator superfamily transporter 2622019..2623368 Pseudomonas putida GB-1 5870133 YP_001668581.1 CDS PputGB1_2345 NC_010322.1 2623365 2624105 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_0784 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2623365..2624105 Pseudomonas putida GB-1 5870134 YP_001668582.1 CDS PputGB1_2346 NC_010322.1 2624102 2624932 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll6916 hypothetical protein; xylose isomerase domain-containing protein 2624102..2624932 Pseudomonas putida GB-1 5870135 YP_001668583.1 CDS PputGB1_2347 NC_010322.1 2624923 2625339 R PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2647 hypothetical protein; endoribonuclease L-PSP complement(2624923..2625339) Pseudomonas putida GB-1 5870136 YP_001668584.1 CDS PputGB1_2348 NC_010322.1 2625339 2626658 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2648 oxidoreductase, PNDR family (class II); FAD dependent oxidoreductase complement(2625339..2626658) Pseudomonas putida GB-1 5870137 YP_001668585.1 CDS PputGB1_2349 NC_010322.1 2626962 2627639 D PFAM: protein of unknown function DUF1028; KEGG: pen:PSEEN2649 hypothetical protein; hypothetical protein 2626962..2627639 Pseudomonas putida GB-1 5870138 YP_001668586.1 CDS PputGB1_2350 NC_010322.1 2627632 2628792 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 2627632..2628792 Pseudomonas putida GB-1 5870139 YP_001668587.1 CDS PputGB1_2351 NC_010322.1 2628851 2630119 R PFAM: Carbohydrate-selective porin OprB; KEGG: pfo:Pfl_2711 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(2628851..2630119) Pseudomonas putida GB-1 5870140 YP_001668588.1 CDS PputGB1_2352 NC_010322.1 2630228 2632645 R TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN2918 quinate dehydrogenase (pyrroloquinoline-quinone); PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein complement(2630228..2632645) Pseudomonas putida GB-1 5870141 YP_001668589.1 CDS PputGB1_2353 NC_010322.1 2632878 2633228 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2914 hypothetical protein; cupin complement(2632878..2633228) Pseudomonas putida GB-1 5870142 YP_001668590.1 CDS PputGB1_2354 NC_010322.1 2633345 2634250 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2913 transcriptional regulator, LysR family; LysR family transcriptional regulator 2633345..2634250 Pseudomonas putida GB-1 5870143 YP_001668591.1 CDS PputGB1_2355 NC_010322.1 2634353 2635552 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2912 transporter, MFS superfamily; major facilitator superfamily transporter 2634353..2635552 Pseudomonas putida GB-1 5870144 YP_001668592.1 CDS PputGB1_2356 NC_010322.1 2635565 2636176 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2911 transporter, LysE family; lysine exporter protein LysE/YggA complement(2635565..2636176) Pseudomonas putida GB-1 5870145 YP_001668593.1 CDS PputGB1_2357 NC_010322.1 2636279 2637277 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2910 transcriptional regulator, AraC family; AraC family transcriptional regulator 2636279..2637277 Pseudomonas putida GB-1 5870146 YP_001668594.1 CDS PputGB1_2358 NC_010322.1 2637244 2638095 R PFAM: SCP-like extracellular; KEGG: pen:PSEEN2909 hypothetical protein; hypothetical protein complement(2637244..2638095) Pseudomonas putida GB-1 5870147 YP_001668595.1 CDS PputGB1_2359 NC_010322.1 2638302 2638913 R PFAM: cell wall hydrolase SleB; KEGG: pen:PSEEN2908 hypothetical protein; cell wall hydrolase SleB complement(2638302..2638913) Pseudomonas putida GB-1 5870148 YP_001668596.1 CDS PputGB1_2360 NC_010322.1 2638948 2639865 R PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN2907 hypothetical protein; auxin efflux carrier complement(2638948..2639865) Pseudomonas putida GB-1 5870149 YP_001668597.1 CDS PputGB1_2361 NC_010322.1 2639972 2640835 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2455 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2639972..2640835) Pseudomonas putida GB-1 5870150 YP_001668598.1 CDS PputGB1_2362 NC_010322.1 2640906 2641754 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2456 amino acid transporter permease protein; binding-protein-dependent transport system inner membrane protein complement(2640906..2641754) Pseudomonas putida GB-1 5870151 YP_001668599.1 CDS PputGB1_2363 NC_010322.1 2641751 2642767 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN2457 amino acid transporter, periplasmic amino acid-binding protein; substrate-binding region of ABC-type glycine betaine transport system complement(2641751..2642767) Pseudomonas putida GB-1 5870152 YP_001668600.1 CDS PputGB1_2364 NC_010322.1 2642930 2644834 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: plu:plu2820 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin 2642930..2644834 Pseudomonas putida GB-1 5870153 YP_001668601.1 CDS PputGB1_2365 NC_010322.1 2644867 2647011 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2997 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(2644867..2647011) Pseudomonas putida GB-1 5870154 YP_001668602.1 CDS PputGB1_2366 NC_010322.1 2647210 2648529 D PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2996 Na+/H+ antiporter, NahC family; Na+/H+ antiporter NhaC 2647210..2648529 Pseudomonas putida GB-1 5870155 YP_001668603.1 CDS PputGB1_2367 NC_010322.1 2648543 2649550 R PFAM: FecR protein; KEGG: pen:PSEEN2995 transmembrane sensor, FecR family; anti-FecI sigma factor FecR complement(2648543..2649550) Pseudomonas putida GB-1 5870156 YP_001668604.1 CDS PputGB1_2368 NC_010322.1 2649822 2651591 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_3819 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(2649822..2651591) Pseudomonas putida GB-1 5870157 YP_001668605.1 CDS PputGB1_2369 NC_010322.1 2651662 2653284 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2651662..2653284) Pseudomonas putida GB-1 5870158 YP_001668606.1 CDS PputGB1_2370 NC_010322.1 2653479 2654885 D KEGG: pmy:Pmen_3816 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 2653479..2654885 Pseudomonas putida GB-1 5870159 YP_001668607.1 CDS PputGB1_2371 NC_010322.1 2654898 2655527 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pmy:Pmen_3815 response regulator receiver protein; two component LuxR family transcriptional regulator 2654898..2655527 Pseudomonas putida GB-1 5870160 YP_001668608.1 CDS PputGB1_2372 NC_010322.1 2655663 2656136 D PFAM: regulatory protein MarR; KEGG: pen:PSEEN2994 transcriptional regulator, MarR family; MarR family transcriptional regulator 2655663..2656136 Pseudomonas putida GB-1 5870161 YP_001668609.1 CDS PputGB1_2373 NC_010322.1 2656167 2657354 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2993 HlyD family secretion protein; secretion protein HlyD family protein 2656167..2657354 Pseudomonas putida GB-1 5870162 YP_001668610.1 CDS PputGB1_2374 NC_010322.1 2657351 2658886 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2992 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 2657351..2658886 Pseudomonas putida GB-1 5870163 YP_001668611.1 CDS PputGB1_2375 NC_010322.1 2659287 2659706 D KEGG: smg:SMGWSS_010 putative ribosomal protein S1; 30S ribosomal protein S1 2659287..2659706 Pseudomonas putida GB-1 5870164 YP_001668612.1 CDS PputGB1_2376 NC_010322.1 2659778 2660524 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2990 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2659778..2660524 Pseudomonas putida GB-1 5870165 YP_001668613.1 CDS PputGB1_2377 NC_010322.1 2660534 2662600 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase complement(2660534..2662600) Pseudomonas putida GB-1 5870166 YP_001668614.1 CDS PputGB1_2378 NC_010322.1 2662664 2664319 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase complement(2662664..2664319) Pseudomonas putida GB-1 5870167 YP_001668615.1 CDS PputGB1_2379 NC_010322.1 2664377 2665786 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2988 transcriptional regulator, GntR family; transcriptional regulator complement(2664377..2665786) Pseudomonas putida GB-1 5870168 YP_001668616.1 CDS PputGB1_2380 NC_010322.1 2665837 2667240 R TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN2987 iron-sulfur cluster-binding protein; cytochrome c oxidase accessory protein CcoG complement(2665837..2667240) Pseudomonas putida GB-1 5870169 YP_001668617.1 CDS PputGB1_2381 NC_010322.1 2667362 2667601 R KEGG: pfl:PFL_2870 hypothetical protein; hypothetical protein complement(2667362..2667601) Pseudomonas putida GB-1 5870170 YP_001668618.1 CDS PputGB1_2382 NC_010322.1 2667705 2668259 D PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN2986 transporter, MgtC family; MgtC/SapB transporter 2667705..2668259 Pseudomonas putida GB-1 5870171 YP_001668619.1 CDS PputGB1_2384 NC_010322.1 2668792 2669691 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(2668792..2669691) Pseudomonas putida GB-1 5870173 YP_001668620.1 CDS PputGB1_2385 NC_010322.1 2669711 2670109 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN2982 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2669711..2670109) Pseudomonas putida GB-1 5870174 YP_001668621.1 CDS PputGB1_2386 NC_010322.1 2670183 2671061 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3049 transcriptional regulator PobR; AraC family transcriptional regulator complement(2670183..2671061) Pseudomonas putida GB-1 5870175 YP_001668622.1 CDS PputGB1_2387 NC_010322.1 2671235 2672422 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2671235..2672422 Pseudomonas putida GB-1 5870176 YP_001668623.1 CDS PputGB1_2388 NC_010322.1 2672466 2673119 R PFAM: Ankyrin; KEGG: reh:H16_B0798 ankyrin repeat protein containing four repeats; ankyrin complement(2672466..2673119) Pseudomonas putida GB-1 5870177 YP_001668624.1 CDS PputGB1_2389 NC_010322.1 2673236 2675026 D KEGG: pfl:PFL_5184 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2673236..2675026 Pseudomonas putida GB-1 5870178 YP_001668625.1 CDS PputGB1_2390 NC_010322.1 2675071 2675952 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 2675071..2675952 Pseudomonas putida GB-1 5870179 YP_001668626.1 CDS PputGB1_2391 NC_010322.1 2676129 2677046 R KEGG: rso:RS00362 hypothetical protein; hypothetical protein complement(2676129..2677046) Pseudomonas putida GB-1 5870180 YP_001668627.1 CDS PputGB1_2392 NC_010322.1 2677118 2678170 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(2677118..2678170) Pseudomonas putida GB-1 5870181 YP_001668628.1 CDS PputGB1_2393 NC_010322.1 2678354 2678776 D PFAM: regulatory protein AsnC/Lrp family; KEGG: rme:Rmet_5648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2678354..2678776 Pseudomonas putida GB-1 5870182 YP_001668629.1 CDS PputGB1_2394 NC_010322.1 2679120 2680538 D PFAM: amino acid permease-associated region; KEGG: pfl:PFL_3642 D-serine/D-alanine/glycine transporter; amino acid permease-associated protein 2679120..2680538 Pseudomonas putida GB-1 5870183 YP_001668630.1 CDS PputGB1_2395 NC_010322.1 2680574 2681173 R PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN2926 hypothetical protein; lipid-binding START domain-containing protein complement(2680574..2681173) Pseudomonas putida GB-1 5870184 YP_001668631.1 CDS PputGB1_2396 NC_010322.1 2681264 2682100 R TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2925 hypothetical protein; hypothetical protein complement(2681264..2682100) Pseudomonas putida GB-1 5870185 YP_001668632.1 CDS PputGB1_2397 NC_010322.1 2682207 2683598 R KEGG: bte:BTH_II1741 monoxygenase; monoxygenase complement(2682207..2683598) Pseudomonas putida GB-1 5870186 YP_001668633.1 CDS PputGB1_2398 NC_010322.1 2683615 2684595 R KEGG: mms:mma_3465 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein complement(2683615..2684595) Pseudomonas putida GB-1 5870187 YP_001668634.1 CDS PputGB1_2399 NC_010322.1 2684793 2685677 D KEGG: pen:PSEEN2922 hypothetical protein; hypothetical protein 2684793..2685677 Pseudomonas putida GB-1 5870188 YP_001668635.1 CDS PputGB1_2400 NC_010322.1 2685685 2686569 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: mlo:mlr2632 hypothetical protein; hypothetical protein complement(2685685..2686569) Pseudomonas putida GB-1 5870189 YP_001668636.1 CDS PputGB1_2401 NC_010322.1 2686741 2687412 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN2015 transcriptional regulator, TetR family; TetR family transcriptional regulator 2686741..2687412 Pseudomonas putida GB-1 5870190 YP_001668637.1 CDS PputGB1_2402 NC_010322.1 2687420 2688529 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2335 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2687420..2688529) Pseudomonas putida GB-1 5870191 YP_001668638.1 CDS PputGB1_2403 NC_010322.1 2688649 2688861 D KEGG: pen:PSEEN2759 hypothetical protein; hypothetical protein 2688649..2688861 Pseudomonas putida GB-1 5870192 YP_001668639.1 CDS PputGB1_2404 NC_010322.1 2688906 2689232 R hypothetical protein complement(2688906..2689232) Pseudomonas putida GB-1 5870193 YP_001668640.1 CDS PputGB1_2405 NC_010322.1 2689422 2689832 D PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2338 hypothetical protein; endoribonuclease L-PSP 2689422..2689832 Pseudomonas putida GB-1 5870194 YP_001668641.1 CDS PputGB1_2406 NC_010322.1 2689942 2690814 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pmy:Pmen_1087 protein of unknown function DUF6, transmembrane; hypothetical protein 2689942..2690814 Pseudomonas putida GB-1 5870195 YP_001668642.1 CDS PputGB1_2407 NC_010322.1 2690811 2691530 R KEGG: pfo:Pfl_1444 hypothetical protein; hypothetical protein complement(2690811..2691530) Pseudomonas putida GB-1 5870196 YP_001668643.1 CDS PputGB1_2408 NC_010322.1 2691612 2691863 R KEGG: pen:PSEEN3318 lipoprotein; lipoprotein complement(2691612..2691863) Pseudomonas putida GB-1 5870197 YP_001668644.1 CDS PputGB1_2409 NC_010322.1 2691994 2692653 D KEGG: smd:Smed_5191 hypothetical protein; hypothetical protein 2691994..2692653 Pseudomonas putida GB-1 5870198 YP_001668645.1 CDS PputGB1_2410 NC_010322.1 2692818 2694287 D KEGG: pfo:Pfl_1376 hypothetical protein; hypothetical protein 2692818..2694287 Pseudomonas putida GB-1 5870199 YP_001668646.1 CDS PputGB1_2411 NC_010322.1 2694284 2695177 D KEGG: pfo:Pfl_1375 hypothetical protein; hypothetical protein 2694284..2695177 Pseudomonas putida GB-1 5870200 YP_001668647.1 CDS PputGB1_2412 NC_010322.1 2695259 2696215 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfl:PFL_2731 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2695259..2696215) Pseudomonas putida GB-1 5870201 YP_001668648.1 CDS PputGB1_2413 NC_010322.1 2696364 2698448 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pfl:PFL_2732 hydantoin utilization protein A; 5-oxoprolinase complement(2696364..2698448) Pseudomonas putida GB-1 5870202 YP_001668649.1 CDS PputGB1_2414 NC_010322.1 2698462 2700207 R PFAM: Hydantoinase B/oxoprolinase; KEGG: pfl:PFL_2733 hydantoin utilization protein B; hydantoinase B/oxoprolinase complement(2698462..2700207) Pseudomonas putida GB-1 5870203 YP_001668650.1 CDS PputGB1_2415 NC_010322.1 2700397 2701251 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: yen:YE1223 putative LysR-family transcriptional regulatory protein; LysR family transcriptional regulator complement(2700397..2701251) Pseudomonas putida GB-1 5870204 YP_001668651.1 CDS PputGB1_2416 NC_010322.1 2701344 2701772 D PFAM: transmembrane pair domain protein; KEGG: spe:Spro_3410 transmembrane pair domain protein; transmembrane pair domain-containing protein 2701344..2701772 Pseudomonas putida GB-1 5870205 YP_001668652.1 CDS PputGB1_2417 NC_010322.1 2701846 2702865 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(2701846..2702865) Pseudomonas putida GB-1 5870206 YP_001668653.1 CDS PputGB1_2418 NC_010322.1 2703012 2704589 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_46010 putative ATP-binding component of ABC transporter; ABC transporter-like protein complement(2703012..2704589) Pseudomonas putida GB-1 5870207 YP_001668654.1 CDS PputGB1_2419 NC_010322.1 2704761 2705123 R KEGG: pen:PSEEN2091 hypothetical protein; hypothetical protein complement(2704761..2705123) Pseudomonas putida GB-1 5870208 YP_001668655.1 CDS PputGB1_2420 NC_010322.1 2705120 2705497 R KEGG: pen:PSEEN2092 hypothetical protein; hypothetical protein complement(2705120..2705497) Pseudomonas putida GB-1 5870209 YP_001668656.1 CDS PputGB1_2421 NC_010322.1 2705917 2706984 D TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN2432 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 2705917..2706984 Pseudomonas putida GB-1 5870210 YP_001668657.1 CDS cobN NC_010322.1 2706988 2710749 D with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 2706988..2710749 Pseudomonas putida GB-1 5870211 YP_001668658.1 CDS PputGB1_2423 NC_010322.1 2710751 2711773 D KEGG: pen:PSEEN2434 magnesium chelatase, subunit ChII; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase 2710751..2711773 Pseudomonas putida GB-1 5870212 YP_001668659.1 CDS PputGB1_2424 NC_010322.1 2711875 2712441 D KEGG: pen:PSEEN2435 hypothetical protein; hypothetical protein 2711875..2712441 Pseudomonas putida GB-1 5870213 YP_001668660.1 CDS PputGB1_2425 NC_010322.1 2712548 2712814 R KEGG: pen:PSEEN2436 hypothetical protein; hypothetical protein complement(2712548..2712814) Pseudomonas putida GB-1 5870214 YP_001668661.1 CDS PputGB1_2426 NC_010322.1 2713157 2714482 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN2438 sigma-54 dependent transcriptional regulator; sigma-54 dependent trancsriptional regulator 2713157..2714482 Pseudomonas putida GB-1 5870215 YP_001668662.1 CDS PputGB1_2427 NC_010322.1 2714683 2715825 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC; RND family efflux transporter MFP subunit 2714683..2715825 Pseudomonas putida GB-1 5870216 YP_001668663.1 CDS PputGB1_2428 NC_010322.1 2715841 2718972 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN3124 multidrug efflux pump MexD (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein 2715841..2718972 Pseudomonas putida GB-1 5870217 YP_001668664.1 CDS PputGB1_2429 NC_010322.1 2718972 2720375 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3123 outer membrane protein OprJ precursor; RND efflux system outer membrane lipoprotein 2718972..2720375 Pseudomonas putida GB-1 5870218 YP_001668665.1 CDS PputGB1_2430 NC_010322.1 2720464 2721021 R PFAM: regulatory protein LacI; KEGG: pen:PSEEN3061 transcriptional regulator NfxB; regulatory protein LacI complement(2720464..2721021) Pseudomonas putida GB-1 5870219 YP_001668666.1 CDS PputGB1_2431 NC_010322.1 2721201 2723174 R PFAM: peptidase U32; KEGG: pen:PSEEN3060 peptidase, U32 family; peptidase U32 complement(2721201..2723174) Pseudomonas putida GB-1 5870220 YP_001668667.1 CDS PputGB1_2432 NC_010322.1 2723329 2723709 R PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2383 endoribonuclease, L-PSP family; endoribonuclease L-PSP complement(2723329..2723709) Pseudomonas putida GB-1 5870221 YP_001668668.1 CDS PputGB1_2433 NC_010322.1 2723784 2724539 D PFAM: protein of unknown function DUF633; KEGG: pen:PSEEN2384 hypothetical protein; hypothetical protein 2723784..2724539 Pseudomonas putida GB-1 5870222 YP_001668669.1 CDS PputGB1_2434 NC_010322.1 2724541 2724801 R KEGG: pen:PSEEN2386 hypothetical protein; hypothetical protein complement(2724541..2724801) Pseudomonas putida GB-1 5870223 YP_001668670.1 CDS PputGB1_2435 NC_010322.1 2724926 2725858 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2387 transcriptional regulator, LysR family; LysR family transcriptional regulator 2724926..2725858 Pseudomonas putida GB-1 5870224 YP_001668671.1 CDS PputGB1_2436 NC_010322.1 2726003 2727154 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN2889 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2726003..2727154) Pseudomonas putida GB-1 5870225 YP_001668672.1 CDS PputGB1_2437 NC_010322.1 2727171 2728241 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2888 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(2727171..2728241) Pseudomonas putida GB-1 5870226 YP_001668673.1 CDS PputGB1_2438 NC_010322.1 2728497 2730158 D TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: psa:PST_4120 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha 2728497..2730158 Pseudomonas putida GB-1 5870227 YP_001668674.1 CDS PputGB1_2439 NC_010322.1 2730158 2731063 D catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 2730158..2731063 Pseudomonas putida GB-1 5870228 YP_001668675.1 CDS PputGB1_2440 NC_010322.1 2731065 2731364 D acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 2731065..2731364 Pseudomonas putida GB-1 5870229 YP_001668676.1 CDS PputGB1_2441 NC_010322.1 2731357 2732205 D The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 2731357..2732205 Pseudomonas putida GB-1 5870230 YP_001668677.1 CDS PputGB1_2442 NC_010322.1 2732202 2732993 D TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: psa:PST_4116 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 2732202..2732993 Pseudomonas putida GB-1 5870231 YP_001668678.1 CDS PputGB1_2443 NC_010322.1 2732995 2733609 D Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 2732995..2733609 Pseudomonas putida GB-1 5870232 YP_001668679.1 CDS PputGB1_2444 NC_010322.1 2733606 2734526 D TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: psa:PST_4114 malonyl CoA-acyl carrier protein transacylase; malonate decarboxylasesubunit epsilon 2733606..2734526 Pseudomonas putida GB-1 5870233 YP_001668680.1 CDS PputGB1_2445 NC_010322.1 2734627 2735049 D TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: pfl:PFL_5813 malonate transporter, MadL subunit; malonate transporter subunit MadL 2734627..2735049 Pseudomonas putida GB-1 5870234 YP_001668681.1 CDS PputGB1_2446 NC_010322.1 2735052 2735816 D TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: pfl:PFL_5812 malonate transporter, MadM subunit; malonate transporter subunit MadM 2735052..2735816 Pseudomonas putida GB-1 5870235 YP_001668682.1 CDS PputGB1_2447 NC_010322.1 2736013 2741847 D KEGG: pen:PSEEN2857 hypothetical protein; hypothetical protein 2736013..2741847 Pseudomonas putida GB-1 5870236 YP_001668683.1 CDS PputGB1_2448 NC_010322.1 2741866 2743842 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pen:PSEEN2854 hypothetical protein; hypothetical protein 2741866..2743842 Pseudomonas putida GB-1 5870237 YP_001668684.1 CDS PputGB1_2449 NC_010322.1 2743839 2744495 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein; electron transport protein SCO1/SenC 2743839..2744495 Pseudomonas putida GB-1 5870238 YP_001668685.1 CDS PputGB1_2450 NC_010322.1 2744492 2745157 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2852 SCO1/SenC family protein; electron transport protein SCO1/SenC 2744492..2745157 Pseudomonas putida GB-1 5870239 YP_001668686.1 CDS PputGB1_2451 NC_010322.1 2745163 2746839 D KEGG: pen:PSEEN2851 cytochrome c; cytochrome c 2745163..2746839 Pseudomonas putida GB-1 5870240 YP_001668687.1 CDS PputGB1_2452 NC_010322.1 2746852 2747493 D PFAM: SurA domain; KEGG: pen:PSEEN2850 hypothetical protein; SurA domain-containing protein 2746852..2747493 Pseudomonas putida GB-1 5870241 YP_001668688.1 CDS PputGB1_2453 NC_010322.1 2747746 2748276 D PFAM: response regulator receiver; KEGG: pen:PSEEN2849 response regulator; response regulator receiver protein 2747746..2748276 Pseudomonas putida GB-1 5870242 YP_001668689.1 CDS PputGB1_2454 NC_010322.1 2748337 2750010 D PFAM: type II secretion system protein E; KEGG: pen:PSEEN2848 type II secretion system protein E; type II secretion system protein E 2748337..2750010 Pseudomonas putida GB-1 5870243 YP_001668690.1 CDS PputGB1_2455 NC_010322.1 2749994 2750773 D KEGG: pen:PSEEN2847 hypothetical protein; hypothetical protein 2749994..2750773 Pseudomonas putida GB-1 5870244 YP_001668691.1 CDS PputGB1_2456 NC_010322.1 2750775 2751317 D KEGG: pen:PSEEN2846 hypothetical protein; hypothetical protein 2750775..2751317 Pseudomonas putida GB-1 5870245 YP_001668692.1 CDS PputGB1_2457 NC_010322.1 2751304 2751867 D KEGG: pen:PSEEN2845 hypothetical protein; hypothetical protein 2751304..2751867 Pseudomonas putida GB-1 5870246 YP_001668693.1 CDS PputGB1_2458 NC_010322.1 2751867 2752376 D KEGG: pen:PSEEN2844 hypothetical protein; hypothetical protein 2751867..2752376 Pseudomonas putida GB-1 5870247 YP_001668694.1 CDS PputGB1_2459 NC_010322.1 2752373 2754238 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN2843 secretion type II protein related to GspD (secretin) protein; type II and III secretion system protein 2752373..2754238 Pseudomonas putida GB-1 5870248 YP_001668695.1 CDS PputGB1_2460 NC_010322.1 2754235 2754714 D related to protein G. signal peptide; KEGG: pen:PSEEN2842 secretion type II protein related to protein G. signal peptide; secretion type II protein 2754235..2754714 Pseudomonas putida GB-1 5870249 YP_001668696.1 CDS PputGB1_2461 NC_010322.1 2754720 2755094 D PFAM: type II secretion system protein G; KEGG: pen:PSEEN2841 secretion protein; type II secretion system protein G 2754720..2755094 Pseudomonas putida GB-1 5870250 YP_001668697.1 CDS PputGB1_2462 NC_010322.1 2755069 2755596 D KEGG: pen:PSEEN2840 hypothetical protein; hypothetical protein 2755069..2755596 Pseudomonas putida GB-1 5870251 YP_001668698.1 CDS PputGB1_2463 NC_010322.1 2755593 2755985 D chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2755593..2755985 Pseudomonas putida GB-1 5870252 YP_001668699.1 CDS PputGB1_2464 NC_010322.1 2755982 2756395 D KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; curli production assembly/transport protein CsgF 2755982..2756395 Pseudomonas putida GB-1 5870253 YP_001668700.1 CDS PputGB1_2465 NC_010322.1 2756430 2757281 D PFAM: Curli production assembly/transport component CsgG; KEGG: pen:PSEEN2837 curli production assembly/transport component CsgG precursor; curli production assembly/transport protein CsgG 2756430..2757281 Pseudomonas putida GB-1 5870254 YP_001668701.1 CDS PputGB1_2466 NC_010322.1 2757426 2758313 D KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 2757426..2758313 Pseudomonas putida GB-1 5870255 YP_001668702.1 CDS PputGB1_2467 NC_010322.1 2758404 2758586 D hypothetical protein 2758404..2758586 Pseudomonas putida GB-1 5870256 YP_001668703.1 CDS PputGB1_2468 NC_010322.1 2758859 2759188 D KEGG: pen:PSEEN1832 hypothetical protein; hypothetical protein 2758859..2759188 Pseudomonas putida GB-1 5870257 YP_001668704.1 CDS PputGB1_2469 NC_010322.1 2759622 2761532 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN2820 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 2759622..2761532 Pseudomonas putida GB-1 5870258 YP_001668705.1 CDS PputGB1_2470 NC_010322.1 2761536 2763269 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2819 ABC efflux transporter, permease/ATP-binding protein; ABC transporter-like protein 2761536..2763269 Pseudomonas putida GB-1 5870259 YP_001668706.1 CDS PputGB1_2471 NC_010322.1 2763259 2763936 D KEGG: pen:PSEEN2818 hypothetical protein; hypothetical protein 2763259..2763936 Pseudomonas putida GB-1 5870260 YP_001668707.1 CDS PputGB1_2472 NC_010322.1 2763929 2765221 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: pen:PSEEN2817 hypothetical protein; monooxygenase FAD-binding 2763929..2765221 Pseudomonas putida GB-1 5870261 YP_001668708.1 CDS PputGB1_2473 NC_010322.1 2765365 2766678 R KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein complement(2765365..2766678) Pseudomonas putida GB-1 5870262 YP_001668709.1 CDS PputGB1_2474 NC_010322.1 2766784 2768277 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2978 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(2766784..2768277) Pseudomonas putida GB-1 5870263 YP_001668710.1 CDS PputGB1_2475 NC_010322.1 2768597 2770255 D PFAM: Quinohemoprotein amine dehydrogenase A alpha subunit haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; KEGG: pen:PSEEN2977 quinohemoprotein amine dehydrogenase 60 kDa subunit; hypothetical protein 2768597..2770255 Pseudomonas putida GB-1 5870264 YP_001668711.1 CDS PputGB1_2476 NC_010322.1 2770304 2771734 D PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2976 hypothetical protein; radical SAM domain-containing protein 2770304..2771734 Pseudomonas putida GB-1 5870265 YP_001668712.1 CDS PputGB1_2477 NC_010322.1 2771736 2772059 D PFAM: Quinohemoprotein amine dehydrogenase gamma subunit; KEGG: pen:PSEEN2975 quinohemoprotein amine dehydrogenase gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma 2771736..2772059 Pseudomonas putida GB-1 5870266 YP_001668713.1 CDS PputGB1_2478 NC_010322.1 2772091 2773212 D KEGG: pen:PSEEN2974 quinohemoprotein amine dehydrogenase 40 kDa subunit; hypothetical protein 2772091..2773212 Pseudomonas putida GB-1 5870267 YP_001668714.1 CDS PputGB1_2479 NC_010322.1 2773289 2774962 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2773289..2774962 Pseudomonas putida GB-1 5870268 YP_001668715.1 CDS mobA NC_010322.1 2774993 2775568 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2774993..2775568) Pseudomonas putida GB-1 5870269 YP_001668716.1 CDS PputGB1_2481 NC_010322.1 2775630 2778758 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2971 multidrug/solvent RND transporter, AcrB-like; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2775630..2778758) Pseudomonas putida GB-1 5870270 YP_001668717.1 CDS PputGB1_2482 NC_010322.1 2778770 2779945 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2970 multidrug efflux RND membrane fusion protein; RND family efflux transporter MFP subunit complement(2778770..2779945) Pseudomonas putida GB-1 5870271 YP_001668718.1 CDS PputGB1_2483 NC_010322.1 2780137 2780838 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2969 response regulator; two component transcriptional regulator 2780137..2780838 Pseudomonas putida GB-1 5870272 YP_001668719.1 CDS PputGB1_2484 NC_010322.1 2780845 2782143 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2968 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2780845..2782143 Pseudomonas putida GB-1 5870273 YP_001668720.1 CDS PputGB1_2485 NC_010322.1 2782118 2783209 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN2967 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2782118..2783209) Pseudomonas putida GB-1 5870274 YP_001668721.1 CDS PputGB1_2486 NC_010322.1 2783251 2784090 R KEGG: pen:PSEEN2966 hypothetical protein; hypothetical protein complement(2783251..2784090) Pseudomonas putida GB-1 5870275 YP_001668722.1 CDS PputGB1_2487 NC_010322.1 2784090 2787095 R KEGG: pen:PSEEN2965 hypothetical protein; bacteriophage N4 receptor, outer membrane subunit complement(2784090..2787095) Pseudomonas putida GB-1 5870276 YP_001668723.1 CDS nfrB NC_010322.1 2787092 2789266 R PFAM: General secretory system II protein E domain protein; KEGG: pen:PSEEN2964 bacteriophage receptor protein NfrB; bacteriophage N4 adsorption protein B complement(2787092..2789266) Pseudomonas putida GB-1 5870277 YP_001668724.1 CDS PputGB1_2489 NC_010322.1 2789460 2789891 D PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN2961 hypothetical protein; transmembrane pair domain-containing protein 2789460..2789891 Pseudomonas putida GB-1 5870278 YP_001668725.1 CDS PputGB1_2490 NC_010322.1 2790073 2791632 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 2790073..2791632 Pseudomonas putida GB-1 5870279 YP_001668726.1 CDS PputGB1_2491 NC_010322.1 2791798 2792979 R KEGG: pen:PSEEN2958 hypothetical protein; hypothetical protein complement(2791798..2792979) Pseudomonas putida GB-1 5870280 YP_001668727.1 CDS PputGB1_2492 NC_010322.1 2793043 2793510 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2957 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2793043..2793510) Pseudomonas putida GB-1 5870281 YP_001668728.1 CDS PputGB1_2493 NC_010322.1 2793621 2795240 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2956 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(2793621..2795240) Pseudomonas putida GB-1 5870282 YP_001668729.1 CDS PputGB1_2494 NC_010322.1 2795388 2799215 R KEGG: pen:PSEEN2953 hypothetical protein; hypothetical protein complement(2795388..2799215) Pseudomonas putida GB-1 5870283 YP_001668730.1 CDS PputGB1_2495 NC_010322.1 2799539 2800693 D KEGG: pen:PSEEN2952 hypothetical protein; hypothetical protein 2799539..2800693 Pseudomonas putida GB-1 5870284 YP_001668731.1 CDS PputGB1_2496 NC_010322.1 2800767 2801885 D KEGG: pen:PSEEN2951 hypothetical protein; hypothetical protein 2800767..2801885 Pseudomonas putida GB-1 5870285 YP_001668732.1 CDS PputGB1_2497 NC_010322.1 2801930 2802712 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pfo:Pfl_2165 transcriptional regulator, AraC family; AraC family transcriptional regulator 2801930..2802712 Pseudomonas putida GB-1 5870286 YP_001668733.1 CDS PputGB1_2498 NC_010322.1 2802691 2803290 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_3318 efflux protein, LysE family; lysine exporter protein LysE/YggA complement(2802691..2803290) Pseudomonas putida GB-1 5870287 YP_001668734.1 CDS PputGB1_2499 NC_010322.1 2803573 2805144 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: pen:PSEEN3059 hypothetical protein; integral membrane protein TerC 2803573..2805144 Pseudomonas putida GB-1 5870288 YP_001668735.1 CDS PputGB1_2500 NC_010322.1 2805107 2805967 R TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein complement(2805107..2805967) Pseudomonas putida GB-1 5870289 YP_001668736.1 CDS PputGB1_2501 NC_010322.1 2806028 2807614 R PFAM: EAL domain protein; KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); diguanylate phosphodiesterase complement(2806028..2807614) Pseudomonas putida GB-1 5870290 YP_001668737.1 CDS PputGB1_2502 NC_010322.1 2807915 2808991 D KEGG: pen:PSEEN3054 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2807915..2808991 Pseudomonas putida GB-1 5870291 YP_001668738.1 CDS PputGB1_2503 NC_010322.1 2809016 2809822 R KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); hypothetical protein complement(2809016..2809822) Pseudomonas putida GB-1 5870292 YP_001668739.1 CDS PputGB1_2504 NC_010322.1 2809956 2810642 R PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN3053 hypothetical protein; ThiJ/PfpI domain-containing protein complement(2809956..2810642) Pseudomonas putida GB-1 5870293 YP_001668740.1 CDS PputGB1_2505 NC_010322.1 2810733 2812856 D KEGG: pen:PSEEN3051 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2810733..2812856 Pseudomonas putida GB-1 5870294 YP_001668741.1 CDS PputGB1_2506 NC_010322.1 2812863 2814479 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3246 sensor histidine kinase/response regulator; histidine kinase complement(2812863..2814479) Pseudomonas putida GB-1 5870295 YP_001668742.1 CDS PputGB1_2507 NC_010322.1 2814560 2815615 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN3050 hypothetical protein; hypothetical protein complement(2814560..2815615) Pseudomonas putida GB-1 5870296 YP_001668743.1 CDS PputGB1_2508 NC_010322.1 2815752 2816339 D PFAM: regulatory protein TetR; KEGG: eca:ECA1819 TetR-family transcriptional regulator; TetR family transcriptional regulator 2815752..2816339 Pseudomonas putida GB-1 5870297 YP_001668744.1 CDS PputGB1_2509 NC_010322.1 2816459 2817874 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2311 multidrug efflux RND outer membrane protein OprN; RND efflux system outer membrane lipoprotein complement(2816459..2817874) Pseudomonas putida GB-1 5870298 YP_001668745.1 CDS PputGB1_2510 NC_010322.1 2817871 2821050 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2312 acridine efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2817871..2821050) Pseudomonas putida GB-1 5870299 YP_001668746.1 CDS PputGB1_2511 NC_010322.1 2821063 2822304 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2313 multidrug efflux RND membrane fusion protein MexE; RND family efflux transporter MFP subunit complement(2821063..2822304) Pseudomonas putida GB-1 5870300 YP_001668747.1 CDS PputGB1_2512 NC_010322.1 2822462 2824048 R PFAM: Rhodanese domain protein; KEGG: pae:PA2603 probable thiosulfate sulfurtransferase; rhodanese domain-containing protein complement(2822462..2824048) Pseudomonas putida GB-1 5870301 YP_001668748.1 CDS PputGB1_2513 NC_010322.1 2824045 2824653 R PFAM: cysteine dioxygenase type I; KEGG: pfl:PFL_1375 hypothetical protein; cysteine dioxygenase type I complement(2824045..2824653) Pseudomonas putida GB-1 5870302 YP_001668749.1 CDS PputGB1_2514 NC_010322.1 2824848 2825783 D TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: psb:Psyr_3606 ABC transporter, substrate-binding protein, aliphatic sulphonates; aliphatic sulfonates ABC transporter substrate-binding protein 2824848..2825783 Pseudomonas putida GB-1 5870303 YP_001668750.1 CDS PputGB1_2515 NC_010322.1 2825811 2827118 D KEGG: rha:RHA1_ro01764 probable nitrilotriacetate monooxygenase, component A; putative nitrilotriacetate monooxygenase, component A 2825811..2827118 Pseudomonas putida GB-1 5870304 YP_001668751.1 CDS PputGB1_2516 NC_010322.1 2827112 2828302 R PFAM: type II secretion system protein; KEGG: pen:PSEEN2459 type II secretion pathway protein F; type II secretion system protein complement(2827112..2828302) Pseudomonas putida GB-1 5870305 YP_001668752.1 CDS PputGB1_2517 NC_010322.1 2828314 2828739 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN2460 probable type II secretion system protein G; general secretion pathway protein G complement(2828314..2828739) Pseudomonas putida GB-1 5870306 YP_001668753.1 CDS PputGB1_2518 NC_010322.1 2828844 2829518 D PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN2461 lytic transglycosylase; lytic transglycosylase 2828844..2829518 Pseudomonas putida GB-1 5870307 YP_001668754.1 CDS PputGB1_2519 NC_010322.1 2829637 2831097 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2416 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2829637..2831097 Pseudomonas putida GB-1 5870308 YP_001668755.1 CDS PputGB1_2520 NC_010322.1 2831395 2832888 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2417 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2831395..2832888 Pseudomonas putida GB-1 5870309 YP_001668756.1 CDS PputGB1_2521 NC_010322.1 2832857 2834284 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2418 sigma-54 dependent transcriptional regulator, fis family/response regulator; Fis family two component sigma-54 specific transcriptional regulator 2832857..2834284 Pseudomonas putida GB-1 5870310 YP_001668757.1 CDS PputGB1_2522 NC_010322.1 2834369 2834671 R KEGG: pen:PSEEN2419 hypothetical protein; hypothetical protein complement(2834369..2834671) Pseudomonas putida GB-1 5870311 YP_001668758.1 CDS PputGB1_2523 NC_010322.1 2834756 2836108 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pen:PSEEN2420 gluconate permease (GntP family); gluconate transporter complement(2834756..2836108) Pseudomonas putida GB-1 5870312 YP_001668759.1 CDS PputGB1_2524 NC_010322.1 2836220 2836759 R TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase complement(2836220..2836759) Pseudomonas putida GB-1 5870313 YP_001668760.1 CDS PputGB1_2525 NC_010322.1 2836967 2837986 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN2422 transcriptional regulator, LacI family; LacI family transcriptional regulator 2836967..2837986 Pseudomonas putida GB-1 5870314 YP_001668761.1 CDS PputGB1_2526 NC_010322.1 2838145 2839464 D KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 2838145..2839464 Pseudomonas putida GB-1 5870315 YP_001668762.1 CDS PputGB1_2527 NC_010322.1 2839439 2842711 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2424 sensor histidine kinase/response regulator; Hpt sensor hybrid histidine kinase complement(2839439..2842711) Pseudomonas putida GB-1 5870316 YP_001668763.1 CDS PputGB1_2528 NC_010322.1 2842725 2843339 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN2425 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(2842725..2843339) Pseudomonas putida GB-1 5870317 YP_001668764.1 CDS PputGB1_2529 NC_010322.1 2843562 2843804 R PFAM: protein of unknown function DUF1272; KEGG: pen:PSEEN2426 hypothetical protein; hypothetical protein complement(2843562..2843804) Pseudomonas putida GB-1 5870318 YP_001668765.1 CDS PputGB1_2530 NC_010322.1 2843871 2844623 R TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2427 precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase complement(2843871..2844623) Pseudomonas putida GB-1 5870319 YP_001668766.1 CDS PputGB1_2531 NC_010322.1 2844657 2845043 R KEGG: pen:PSEEN2428 cobalamin biosynthesis protein CobE; cobalamin biosynthesis protein CobE complement(2844657..2845043) Pseudomonas putida GB-1 5870320 YP_001668767.1 CDS PputGB1_2532 NC_010322.1 2845043 2845729 R TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: pen:PSEEN2429 cobalt transporter subunit CbtA; cobalt transporter subunit CbtA complement(2845043..2845729) Pseudomonas putida GB-1 5870321 YP_001668768.1 CDS PputGB1_2533 NC_010322.1 2845739 2845927 R TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: pen:PSEEN2431 hypothetical protein; cobalt transporter subunit CbtB complement(2845739..2845927) Pseudomonas putida GB-1 5870322 YP_001668769.1 CDS PputGB1_2534 NC_010322.1 2846359 2847459 R PFAM: luciferase family protein; KEGG: bur:Bcep18194_B1755 alkanesulfonate monooxygenase; alkanesulfonate monooxygenase complement(2846359..2847459) Pseudomonas putida GB-1 5870323 YP_001668770.1 CDS PputGB1_2535 NC_010322.1 2847487 2848821 R KEGG: psb:Psyr_2211 monooxygenase, NtaA/SnaA/SoxA family; NtaA/SnaA/SoxA family monooxygenase complement(2847487..2848821) Pseudomonas putida GB-1 5870324 YP_001668771.1 CDS PputGB1_2536 NC_010322.1 2848912 2849706 R PFAM: class II aldolase/adducin family protein; KEGG: pst:PSPTO_2487 hypothetical protein; aldolase II superfamily protein complement(2848912..2849706) Pseudomonas putida GB-1 5870325 YP_001668772.1 CDS PputGB1_2537 NC_010322.1 2849731 2850675 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pst:PSPTO_2424 D-isomer specific 2-hydroxyacid dehydrogenase family protein; D-isomer specific 2-hydroxyacid dehydrogenase complement(2849731..2850675) Pseudomonas putida GB-1 5870326 YP_001668773.1 CDS PputGB1_2538 NC_010322.1 2850672 2851808 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pst:PSPTO_1790 acyl-CoA dehydrogenase family protein; type 2 acyl-CoA dehydrogenase complement(2850672..2851808) Pseudomonas putida GB-1 5870327 YP_001668774.1 CDS PputGB1_2539 NC_010322.1 2852019 2852909 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_1376 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2852019..2852909) Pseudomonas putida GB-1 5870328 YP_001668775.1 CDS PputGB1_2540 NC_010322.1 2853005 2853484 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2001 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2853005..2853484) Pseudomonas putida GB-1 5870329 YP_001668776.1 CDS PputGB1_2541 NC_010322.1 2853609 2854238 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2002 transporter, LysE family; lysine exporter protein LysE/YggA 2853609..2854238 Pseudomonas putida GB-1 5870330 YP_001668777.1 CDS PputGB1_2542 NC_010322.1 2854260 2855144 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN2003 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2854260..2855144 Pseudomonas putida GB-1 5870331 YP_001668778.1 CDS PputGB1_2543 NC_010322.1 2855207 2856181 D KEGG: scl:sce1298 hypothetical protein; hypothetical protein 2855207..2856181 Pseudomonas putida GB-1 5870332 YP_001668779.1 CDS PputGB1_2544 NC_010322.1 2856287 2857174 D PFAM: Pirin domain protein; KEGG: pen:PSEEN2646 hypothetical protein; pirin domain-containing protein 2856287..2857174 Pseudomonas putida GB-1 5870333 YP_001668780.1 CDS PputGB1_2545 NC_010322.1 2857215 2858192 D PFAM: HhH-GPD family protein; AlkA domain protein; KEGG: pfl:PFL_4632 DNA-3-methyladenine glycosylase II; alcohol dehydrogenase 2857215..2858192 Pseudomonas putida GB-1 5870334 YP_001668781.1 CDS PputGB1_2546 NC_010322.1 2858379 2858639 D PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN2104 hypothetical protein; hypothetical protein 2858379..2858639 Pseudomonas putida GB-1 5870335 YP_001668782.1 CDS PputGB1_2547 NC_010322.1 2858660 2859274 R PFAM: protein of unknown function DUF1282; KEGG: pfo:Pfl_2694 protein of unknown function DUF1282; hypothetical protein complement(2858660..2859274) Pseudomonas putida GB-1 5870336 YP_001668783.1 CDS PputGB1_2548 NC_010322.1 2859361 2859648 R KEGG: pen:PSEEN2105 hypothetical protein; hypothetical protein complement(2859361..2859648) Pseudomonas putida GB-1 5870337 YP_001668784.1 CDS PputGB1_2549 NC_010322.1 2859816 2860475 R PFAM: 2OG-Fe(II) oxygenase; KEGG: pen:PSEEN2825 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA; 2OG-Fe(II) oxygenase complement(2859816..2860475) Pseudomonas putida GB-1 5870338 YP_001668785.1 CDS PputGB1_2550 NC_010322.1 2860652 2862097 R PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2824 curlin; signal peptide; curlin-associated protein complement(2860652..2862097) Pseudomonas putida GB-1 5870339 YP_001668786.1 CDS PputGB1_2551 NC_010322.1 2862114 2862587 R PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2823 curli fiber surface-exposed nucleator CsgB; curlin-associated protein complement(2862114..2862587) Pseudomonas putida GB-1 5870340 YP_001668787.1 CDS PputGB1_2552 NC_010322.1 2862604 2864835 R KEGG: pen:PSEEN2822 hypothetical protein; hypothetical protein complement(2862604..2864835) Pseudomonas putida GB-1 5870341 YP_001668788.1 CDS PputGB1_2553 NC_010322.1 2864868 2866196 R KEGG: pen:PSEEN2821 hypothetical protein; hypothetical protein complement(2864868..2866196) Pseudomonas putida GB-1 5870342 YP_001668789.1 CDS PputGB1_2554 NC_010322.1 2866495 2867622 R KEGG: csa:Csal_2244 hypothetical protein; hypothetical protein complement(2866495..2867622) Pseudomonas putida GB-1 5870343 YP_001668790.1 CDS PputGB1_2555 NC_010322.1 2867622 2870303 R KEGG: csa:Csal_0206 hypothetical protein; hypothetical protein complement(2867622..2870303) Pseudomonas putida GB-1 5870344 YP_001668791.1 CDS PputGB1_2556 NC_010322.1 2870315 2871193 R KEGG: csa:Csal_0205 hypothetical protein; hypothetical protein complement(2870315..2871193) Pseudomonas putida GB-1 5870345 YP_001668792.1 CDS PputGB1_2557 NC_010322.1 2871193 2873373 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0262 hypothetical protein; ImpA family type VI secretion-associated protein complement(2871193..2873373) Pseudomonas putida GB-1 5870346 YP_001668793.1 CDS PputGB1_2558 NC_010322.1 2873387 2874235 R KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein complement(2873387..2874235) Pseudomonas putida GB-1 5870347 YP_001668794.1 CDS PputGB1_2559 NC_010322.1 2874479 2875297 R KEGG: pen:PSEEN2686 hypothetical protein; hypothetical protein complement(2874479..2875297) Pseudomonas putida GB-1 5870348 YP_001668795.1 CDS PputGB1_2560 NC_010322.1 2875300 2875989 R PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2687 hypothetical protein; putative phosphohistidine phosphatase, SixA complement(2875300..2875989) Pseudomonas putida GB-1 5870349 YP_001668796.1 CDS PputGB1_2561 NC_010322.1 2876263 2877009 D KEGG: pfl:PFL_0053 hypothetical protein; gluconate 2-dehydrogenase 2876263..2877009 Pseudomonas putida GB-1 5870350 YP_001668797.1 CDS PputGB1_2562 NC_010322.1 2877013 2878797 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: pfo:Pfl_0085 glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2877013..2878797 Pseudomonas putida GB-1 5870351 YP_001668798.1 CDS PputGB1_2563 NC_010322.1 2878810 2880057 D PFAM: cytochrome c class I; KEGG: pfl:PFL_0055 cytochrome c family protein; gluconate 2-dehydrogenase 2878810..2880057 Pseudomonas putida GB-1 5870352 YP_001668799.1 CDS PputGB1_2564 NC_010322.1 2880278 2881297 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pau:PA14_35370 transcriptional regulator PtxS; LacI family transcriptional regulator 2880278..2881297 Pseudomonas putida GB-1 5870353 YP_001668800.1 CDS PputGB1_2565 NC_010322.1 2881364 2882143 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pau:PA14_35360 putative epimerase; xylose isomerase domain-containing protein 2881364..2882143 Pseudomonas putida GB-1 5870354 YP_001668801.1 CDS PputGB1_2566 NC_010322.1 2882136 2883086 D PFAM: PfkB domain protein; KEGG: pae:PA2261 probable 2-ketogluconate kinase; ribokinase-like domain-containing protein 2882136..2883086 Pseudomonas putida GB-1 5870355 YP_001668802.1 CDS PputGB1_2567 NC_010322.1 2883146 2884438 D PFAM: major facilitator superfamily MFS_1; KEGG: pau:PA14_35330 putative 2-ketogluconate transporter; major facilitator superfamily transporter 2883146..2884438 Pseudomonas putida GB-1 5870356 YP_001668803.1 CDS PputGB1_2568 NC_010322.1 2884449 2885411 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pau:PA14_35320 2-ketogluconate 6-phosphate reductase; D-isomer specific 2-hydroxyacid dehydrogenase 2884449..2885411 Pseudomonas putida GB-1 5870357 YP_001668804.1 CDS PputGB1_2569 NC_010322.1 2885470 2886435 R PFAM: Endonuclease I; KEGG: plu:plu2037 hypothetical protein; deoxyribonuclease I complement(2885470..2886435) Pseudomonas putida GB-1 5870358 YP_001668805.1 CDS PputGB1_2570 NC_010322.1 2886450 2886833 R KEGG: psb:Psyr_3795 hypothetical protein; hypothetical protein complement(2886450..2886833) Pseudomonas putida GB-1 5870359 YP_001668806.1 CDS PputGB1_2571 NC_010322.1 2886981 2889380 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: psp:PSPPH_1459 outer membrane protein, OMP85 family; outer membrane protein assembly complex, YaeT protein complement(2886981..2889380) Pseudomonas putida GB-1 5870360 YP_001668807.1 CDS PputGB1_2572 NC_010322.1 2889542 2890234 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3793 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 2889542..2890234 Pseudomonas putida GB-1 5870361 YP_001668808.1 CDS PputGB1_2573 NC_010322.1 2890231 2891496 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: psb:Psyr_3792 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 2890231..2891496 Pseudomonas putida GB-1 5870362 YP_001668809.1 CDS PputGB1_2574 NC_010322.1 2891528 2891995 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_4037 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2891528..2891995) Pseudomonas putida GB-1 5870363 YP_001668810.1 CDS PputGB1_2575 NC_010322.1 2892159 2893409 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2892159..2893409 Pseudomonas putida GB-1 5870364 YP_001668811.1 CDS PputGB1_2576 NC_010322.1 2893488 2894693 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 2893488..2894693 Pseudomonas putida GB-1 5870365 YP_001668812.1 CDS PputGB1_2577 NC_010322.1 2894706 2895890 R PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_2918 major facilitator family transporter; major facilitator superfamily transporter complement(2894706..2895890) Pseudomonas putida GB-1 5870366 YP_001668813.1 CDS PputGB1_2578 NC_010322.1 2895997 2896467 R PFAM: regulatory protein AsnC/Lrp family; KEGG: hch:HCH_01492 transcriptional regulator; AsnC family transcriptional regulator complement(2895997..2896467) Pseudomonas putida GB-1 5870367 YP_001668814.1 CDS PputGB1_2579 NC_010322.1 2896489 2897784 R PFAM: FAD dependent oxidoreductase; KEGG: bpt:Bpet3491 putative oxidoreductase; FAD dependent oxidoreductase complement(2896489..2897784) Pseudomonas putida GB-1 5870368 YP_001668815.1 CDS PputGB1_2580 NC_010322.1 2897882 2898721 R PFAM: extracellular solute-binding protein family 3; KEGG: ret:RHE_PF00192 probable amino acid ABC transporter, substrate-binding protein; extracellular solute-binding protein complement(2897882..2898721) Pseudomonas putida GB-1 5870369 YP_001668816.1 CDS PputGB1_2581 NC_010322.1 2898783 2899550 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vco:VC0395_A0972 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2898783..2899550) Pseudomonas putida GB-1 5870370 YP_001668817.1 CDS PputGB1_2582 NC_010322.1 2899563 2900528 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00191 probable amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(2899563..2900528) Pseudomonas putida GB-1 5870371 YP_001668818.1 CDS PputGB1_2583 NC_010322.1 2900778 2901437 D KEGG: reh:H16_B1854 putative hydrolase alpha/beta fold; putative hydrolase alpha/beta fold 2900778..2901437 Pseudomonas putida GB-1 5870372 YP_001668819.1 CDS PputGB1_2584 NC_010322.1 2901422 2902303 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vvu:VV1_2777 transcriptional regulator; LysR family transcriptional regulator complement(2901422..2902303) Pseudomonas putida GB-1 5870373 YP_001668820.1 CDS PputGB1_2585 NC_010322.1 2902489 2904132 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2902489..2904132 Pseudomonas putida GB-1 5870374 YP_001668821.1 CDS PputGB1_2586 NC_010322.1 2904273 2906816 R PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein complement(2904273..2906816) Pseudomonas putida GB-1 5870375 YP_001668822.1 CDS PputGB1_2587 NC_010322.1 2906976 2908298 R PFAM: amino acid permease-associated region; KEGG: pap:PSPA7_1544 probable amino acid permease; amino acid permease-associated protein complement(2906976..2908298) Pseudomonas putida GB-1 5870376 YP_001668823.1 CDS PputGB1_2588 NC_010322.1 2908396 2909217 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pap:PSPA7_1543 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2908396..2909217) Pseudomonas putida GB-1 5870377 YP_001668824.1 CDS PputGB1_2589 NC_010322.1 2909379 2910167 D PFAM: regulatory protein LuxR; KEGG: pau:PA14_17720 putative transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2909379..2910167 Pseudomonas putida GB-1 5870378 YP_001668825.1 CDS PputGB1_2590 NC_010322.1 2910170 2910961 R PFAM: regulatory protein LuxR; KEGG: pau:PA14_45250 putative transcriptional regulator; LuxR family transcriptional regulator complement(2910170..2910961) Pseudomonas putida GB-1 5870379 YP_001668826.1 CDS PputGB1_2591 NC_010322.1 2911157 2912521 D PFAM: amino acid permease-associated region; KEGG: pau:PA14_45240 putative amino acid permease; amino acid permease-associated protein 2911157..2912521 Pseudomonas putida GB-1 5870380 YP_001668827.1 CDS PputGB1_2592 NC_010322.1 2912531 2913637 D PFAM: peptidase S58 DmpA; KEGG: pae:PA1486 hypothetical protein; peptidase S58 DmpA 2912531..2913637 Pseudomonas putida GB-1 5870381 YP_001668828.1 CDS PputGB1_2593 NC_010322.1 2913753 2914394 D KEGG: eca:ECA1481 hypothetical protein; hypothetical protein 2913753..2914394 Pseudomonas putida GB-1 5870382 YP_001668829.1 CDS PputGB1_2594 NC_010322.1 2914373 2914810 R PFAM: Calcium/calmodulin dependent protein kinase II association-domain protein; KEGG: pde:Pden_1337 hypothetical protein; calcium/calmodulin dependent protein kinase II association-domain-containing protein complement(2914373..2914810) Pseudomonas putida GB-1 5870383 YP_001668830.1 CDS PputGB1_2595 NC_010322.1 2915201 2915605 D TIGRFAM: RNA polymerase-binding protein DksA; KEGG: pfl:PFL_6174 RNA polymerase-binding protein DksA, putative; TraR/DksA family transcriptional regulator 2915201..2915605 Pseudomonas putida GB-1 5870384 YP_001668831.1 CDS PputGB1_2596 NC_010322.1 2915682 2916446 D PFAM: protein of unknown function DUF347; KEGG: pfl:PFL_4648 hypothetical protein; hypothetical protein 2915682..2916446 Pseudomonas putida GB-1 5870385 YP_001668832.1 CDS PputGB1_2597 NC_010322.1 2916465 2916890 D KEGG: bvi:Bcep1808_7222 conserved hypothetical signal peptide protein; putative signal peptide protein 2916465..2916890 Pseudomonas putida GB-1 5870386 YP_001668833.1 CDS PputGB1_2598 NC_010322.1 2916958 2917623 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rme:Rmet_4978 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2916958..2917623 Pseudomonas putida GB-1 5870387 YP_001668834.1 CDS PputGB1_2599 NC_010322.1 2917599 2918951 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2297 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 2917599..2918951 Pseudomonas putida GB-1 5870388 YP_001668835.1 CDS PputGB1_2600 NC_010322.1 2918967 2919455 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_2362 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2918967..2919455) Pseudomonas putida GB-1 5870389 YP_001668836.1 CDS PputGB1_2601 NC_010322.1 2919551 2922598 D PFAM: aminoglycoside phosphotransferase; peptidase M23B; aminotransferase class-III; KEGG: pfl:PFL_2361 hypothetical protein; hypothetical protein 2919551..2922598 Pseudomonas putida GB-1 5870390 YP_001668837.1 CDS PputGB1_2602 NC_010322.1 2922651 2923091 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pfl:PFL_2362 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2922651..2923091) Pseudomonas putida GB-1 5870391 YP_001668838.1 CDS PputGB1_2603 NC_010322.1 2923380 2924168 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pfl:PFL_2360 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 2923380..2924168 Pseudomonas putida GB-1 5870392 YP_001668839.1 CDS PputGB1_2604 NC_010322.1 2924234 2924881 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2359 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 2924234..2924881 Pseudomonas putida GB-1 5870393 YP_001668840.1 CDS PputGB1_2605 NC_010322.1 2924891 2925550 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_2358 amino acid ABC transporter; polar amino acid ABC transporter inner membrane subunit 2924891..2925550 Pseudomonas putida GB-1 5870394 YP_001668841.1 CDS PputGB1_2606 NC_010322.1 2925547 2926311 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2357 glutamine ABC transporter, ATP-binding protein; ABC transporter-like protein 2925547..2926311 Pseudomonas putida GB-1 5870395 YP_001668842.1 CDS PputGB1_2607 NC_010322.1 2926435 2926794 D KEGG: ctc:CTC02318 histidine ammonia-lyase; histidine ammonia-lyase 2926435..2926794 Pseudomonas putida GB-1 5870396 YP_001668843.1 CDS PputGB1_2608 NC_010322.1 2926791 2927069 D KEGG: mxa:MXAN_3465 histidine ammonia-lyase; histidine ammonia-lyase 2926791..2927069 Pseudomonas putida GB-1 5870397 YP_001668844.1 CDS PputGB1_2609 NC_010322.1 2927337 2928368 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pau:PA14_20890 ADP-L-glycero-D-mannoheptose 6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 2927337..2928368 Pseudomonas putida GB-1 5870398 YP_001668845.1 CDS PputGB1_2610 NC_010322.1 2928506 2929510 R TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator complement(2928506..2929510) Pseudomonas putida GB-1 5870399 YP_001668846.1 CDS PputGB1_2611 NC_010322.1 2929507 2930106 R TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2790 regulatory PhaM protein; phenylacetic acid degradation protein PaaY complement(2929507..2930106) Pseudomonas putida GB-1 5870400 YP_001668847.1 CDS PputGB1_2612 NC_010322.1 2930461 2931234 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2791 enoyl-CoA hydratase/isomerase PhaA; enoyl-CoA hydratase-isomerase 2930461..2931234 Pseudomonas putida GB-1 5870401 YP_001668848.1 CDS PputGB1_2613 NC_010322.1 2931269 2932060 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2931269..2932060 Pseudomonas putida GB-1 5870402 YP_001668849.1 CDS PputGB1_2614 NC_010322.1 2932063 2933580 D converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2932063..2933580 Pseudomonas putida GB-1 5870403 YP_001668850.1 CDS PputGB1_2615 NC_010322.1 2933573 2934013 D TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein; phenylacetic acid degradation protein PaaD 2933573..2934013 Pseudomonas putida GB-1 5870404 YP_001668851.1 CDS PputGB1_2616 NC_010322.1 2934006 2935226 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2934006..2935226 Pseudomonas putida GB-1 5870405 YP_001668852.1 CDS PputGB1_2617 NC_010322.1 2935348 2936667 D TIGRFAM: phenylacetate-CoA ligase; KEGG: pen:PSEEN2796 phenylacetyl-CoA ligase; phenylacetate-CoA ligase 2935348..2936667 Pseudomonas putida GB-1 5870406 YP_001668853.1 CDS paaA NC_010322.1 2936873 2937862 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2936873..2937862 Pseudomonas putida GB-1 5870407 YP_001668854.1 CDS paaB NC_010322.1 2937888 2938169 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2937888..2938169 Pseudomonas putida GB-1 5870408 YP_001668855.1 CDS PputGB1_2620 NC_010322.1 2938178 2938936 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pen:PSEEN2800 phenylacetic acid degradation, subunit of multicomponent oxygenase; phenylacetate-CoA oxygenase subunit PaaI 2938178..2938936 Pseudomonas putida GB-1 5870409 YP_001668856.1 CDS PputGB1_2621 NC_010322.1 2938923 2939456 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN2801 ring-hydroxylation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ 2938923..2939456 Pseudomonas putida GB-1 5870410 YP_001668857.1 CDS PputGB1_2622 NC_010322.1 2939472 2940548 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2802 ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK 2939472..2940548 Pseudomonas putida GB-1 5870411 YP_001668858.1 CDS PputGB1_2623 NC_010322.1 2940718 2941026 D PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN2803 hypothetical protein; hypothetical protein 2940718..2941026 Pseudomonas putida GB-1 5870412 YP_001668859.1 CDS PputGB1_2624 NC_010322.1 2941023 2942585 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2941023..2942585 Pseudomonas putida GB-1 5870413 YP_001668860.1 CDS PputGB1_2625 NC_010322.1 2942625 2943857 D PFAM: outer membrane porin; KEGG: pen:PSEEN2805 phenylacetic acid-specific porin; outer membrane porin 2942625..2943857 Pseudomonas putida GB-1 5870414 YP_001668861.1 CDS PputGB1_2626 NC_010322.1 2943896 2945950 D catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2943896..2945950 Pseudomonas putida GB-1 5870415 YP_001668862.1 CDS PputGB1_2627 NC_010322.1 2945999 2946268 R KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein complement(2945999..2946268) Pseudomonas putida GB-1 5870416 YP_001668863.1 CDS PputGB1_2628 NC_010322.1 2946375 2946584 R KEGG: pmy:Pmen_2359 hypothetical protein; hypothetical protein complement(2946375..2946584) Pseudomonas putida GB-1 5870417 YP_001668864.1 CDS PputGB1_2629 NC_010322.1 2946705 2947256 R PFAM: peptidase S14 ClpP; KEGG: pen:PSEEN3077 clp protease (protease subunit); peptidase S14 ClpP complement(2946705..2947256) Pseudomonas putida GB-1 5870418 YP_001668865.1 CDS PputGB1_2630 NC_010322.1 2947279 2947653 R PFAM: protein of unknown function DUF1452; KEGG: pen:PSEEN3078 hypothetical protein; hypothetical protein complement(2947279..2947653) Pseudomonas putida GB-1 5870419 YP_001668866.1 CDS PputGB1_2631 NC_010322.1 2947806 2948579 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN3079 DNase with DNase I-like domain; endonuclease/exonuclease/phosphatase 2947806..2948579 Pseudomonas putida GB-1 5870420 YP_001668867.1 CDS PputGB1_2632 NC_010322.1 2948576 2949778 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN3080 phospholipase (biosynthetic); cardiolipin synthase 2 2948576..2949778 Pseudomonas putida GB-1 5870421 YP_001668868.1 CDS PputGB1_2633 NC_010322.1 2949778 2950731 D KEGG: pen:PSEEN3081 hypothetical protein; hypothetical protein 2949778..2950731 Pseudomonas putida GB-1 5870422 YP_001668869.1 CDS PputGB1_2634 NC_010322.1 2950777 2951241 R KEGG: pen:PSEEN2768 hypothetical protein; hypothetical protein complement(2950777..2951241) Pseudomonas putida GB-1 5870423 YP_001668870.1 CDS ligD NC_010322.1 2951369 2953870 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2951369..2953870 Pseudomonas putida GB-1 5870424 YP_001668871.1 CDS PputGB1_2636 NC_010322.1 2953911 2954954 D KEGG: pen:PSEEN2765 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2953911..2954954 Pseudomonas putida GB-1 5870425 YP_001668872.1 CDS PputGB1_2637 NC_010322.1 2954951 2955703 D PFAM: LmbE family protein; KEGG: pen:PSEEN2764 hypothetical protein; LmbE family protein 2954951..2955703 Pseudomonas putida GB-1 5870426 YP_001668873.1 CDS PputGB1_2638 NC_010322.1 2955714 2956313 D PFAM: NodS family protein; Methyltransferase type 12; KEGG: pen:PSEEN2763 methyltransferase; NodS family protein 2955714..2956313 Pseudomonas putida GB-1 5870427 YP_001668874.1 CDS PputGB1_2639 NC_010322.1 2956310 2957008 D PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2762 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 2956310..2957008 Pseudomonas putida GB-1 5870428 YP_001668875.1 CDS PputGB1_2640 NC_010322.1 2957003 2957824 R TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: pen:PSEEN2761 Ku protein; Ku protein complement(2957003..2957824) Pseudomonas putida GB-1 5870429 YP_001668876.1 CDS PputGB1_2641 NC_010322.1 2957913 2958500 R KEGG: fjo:Fjoh_3241 nucleoside phosphorylase-like protein; nucleoside phosphorylase-like protein complement(2957913..2958500) Pseudomonas putida GB-1 5870430 YP_001668877.1 CDS PputGB1_2642 NC_010322.1 2958638 2958820 R KEGG: pen:PSEEN3087 hypothetical protein; hypothetical protein complement(2958638..2958820) Pseudomonas putida GB-1 5870431 YP_001668878.1 CDS PputGB1_2643 NC_010322.1 2958968 2960251 R PFAM: major facilitator superfamily MFS_1; KEGG: mfa:Mfla_1799 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2958968..2960251) Pseudomonas putida GB-1 5870432 YP_001668879.1 CDS PputGB1_2644 NC_010322.1 2960256 2961167 R PFAM: aldo/keto reductase; KEGG: mfa:Mfla_1798 twin-arginine translocation pathway signal; aldo/keto reductase complement(2960256..2961167) Pseudomonas putida GB-1 5870433 YP_001668880.1 CDS PputGB1_2645 NC_010322.1 2961257 2962120 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pen:PSEEN3113 Dyp-type peroxidase; Dyp-type peroxidase family protein complement(2961257..2962120) Pseudomonas putida GB-1 5870434 YP_001668881.1 CDS PputGB1_2646 NC_010322.1 2962305 2963198 D PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3114 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 2962305..2963198 Pseudomonas putida GB-1 5870435 YP_001668882.1 CDS PputGB1_2647 NC_010322.1 2963214 2963744 R PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN3115 beta-carotene hydroxylase; fatty acid hydroxylase complement(2963214..2963744) Pseudomonas putida GB-1 5870436 YP_001668883.1 CDS PputGB1_2648 NC_010322.1 2964078 2964791 D PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN3117 magnesium transporter, MgtC family; MgtC/SapB transporter 2964078..2964791 Pseudomonas putida GB-1 5870437 YP_001668884.1 CDS PputGB1_2649 NC_010322.1 2964809 2965318 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3121 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2964809..2965318 Pseudomonas putida GB-1 5870438 YP_001668885.1 CDS PputGB1_2650 NC_010322.1 2965320 2966300 R KEGG: pen:PSEEN2808 Tn4652 cointegrate resolution protein T; Tn4652 cointegrate resolution protein T complement(2965320..2966300) Pseudomonas putida GB-1 5870439 YP_001668886.1 CDS PputGB1_2651 NC_010322.1 2966526 2967767 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: psa:PST_3570 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase complement(2966526..2967767) Pseudomonas putida GB-1 5870440 YP_001668887.1 CDS codB NC_010322.1 2968985 2970250 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bte:BTH_II1641 cytosine permease; cytosine permease complement(2968985..2970250) Pseudomonas putida GB-1 5870442 YP_001668888.1 CDS PputGB1_2655 NC_010322.1 2970741 2971565 D PFAM: class II aldolase/adducin family protein; KEGG: pfl:PFL_1381 hypothetical protein; class II aldolase/adducin family protein 2970741..2971565 Pseudomonas putida GB-1 5870443 YP_001668889.1 CDS PputGB1_2656 NC_010322.1 2971576 2972544 D KEGG: pfl:PFL_1382 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative; aliphatic sulfonate ABC transporter periplasmic substrate-binding protein 2971576..2972544 Pseudomonas putida GB-1 5870444 YP_001668890.1 CDS PputGB1_2657 NC_010322.1 2972719 2975154 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psp:PSPPH_2892 TonB-dependent siderophore receptor, putative; TonB-dependent receptor plug 2972719..2975154 Pseudomonas putida GB-1 5870445 YP_001668891.1 CDS PputGB1_2658 NC_010322.1 2975205 2976524 D KEGG: pfl:PFL_1391 monooxygenase, NtaA/SnaA/SoxA family; NtaA/SnaA/SoxA family monooxygenase 2975205..2976524 Pseudomonas putida GB-1 5870446 YP_001668892.1 CDS PputGB1_2659 NC_010322.1 2976534 2978141 D PFAM: extracellular solute-binding protein family 5; KEGG: kra:Krad_0939 extracellular solute-binding protein family 5; extracellular solute-binding protein 2976534..2978141 Pseudomonas putida GB-1 5870447 YP_001668893.1 CDS PputGB1_2660 NC_010322.1 2978138 2979097 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_0940 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2978138..2979097 Pseudomonas putida GB-1 5870448 YP_001668894.1 CDS PputGB1_2661 NC_010322.1 2979094 2979936 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_0941 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2979094..2979936 Pseudomonas putida GB-1 5870449 YP_001668895.1 CDS PputGB1_2662 NC_010322.1 2979933 2981549 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: nfa:nfa17450 putative ABC transporter ATP-binding protein; ABC transporter-like protein 2979933..2981549 Pseudomonas putida GB-1 5870450 YP_001668896.1 CDS PputGB1_2663 NC_010322.1 2981668 2982327 R PFAM: TENA/THI-4 domain protein; KEGG: nwi:Nwi_0858 TenA/THI-4 protein; TenA family transcription regulator complement(2981668..2982327) Pseudomonas putida GB-1 5870451 YP_001668897.1 CDS PputGB1_2664 NC_010322.1 2982330 2982977 R PFAM: TENA/THI-4 domain protein; KEGG: pde:Pden_3673 transcriptional activator, TenA family; TenA family transcription regulator complement(2982330..2982977) Pseudomonas putida GB-1 5870452 YP_001668898.1 CDS PputGB1_2665 NC_010322.1 2983423 2986818 D PFAM: multicopper oxidase type 2; KEGG: pen:PSEEN2124 hypothetical protein; multicopper oxidase type 2 2983423..2986818 Pseudomonas putida GB-1 5870453 YP_001668899.1 CDS PputGB1_2666 NC_010322.1 2986880 2987863 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2123 electron transporter, SCO1/SenC family protein/cytochrome c; electron transport protein SCO1/SenC 2986880..2987863 Pseudomonas putida GB-1 5870454 YP_001668900.1 CDS PputGB1_2667 NC_010322.1 2987945 2990272 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2876 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2987945..2990272 Pseudomonas putida GB-1 5870455 YP_001668901.1 CDS PputGB1_2668 NC_010322.1 2990260 2991132 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN2877 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 2990260..2991132 Pseudomonas putida GB-1 5870456 YP_001668902.1 CDS PputGB1_2669 NC_010322.1 2991198 2992148 D PFAM: integrase family protein; KEGG: pap:PSPA7_3058 cointegrate resolution protein S; integrase family protein 2991198..2992148 Pseudomonas putida GB-1 5870457 YP_001668903.1 CDS PputGB1_2670 NC_010322.1 2992138 2993862 R PFAM: short-chain dehydrogenase/reductase SDR; SMP-30/Gluconolaconase/LRE domain protein; KR domain protein; KEGG: ent:Ent638_1528 short-chain dehydrogenase/reductase SDR; SMP-30/gluconolaconase/LRE domain-containing protein complement(2992138..2993862) Pseudomonas putida GB-1 5870458 YP_001668904.1 CDS PputGB1_2671 NC_010322.1 2993990 2994889 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2993990..2994889 Pseudomonas putida GB-1 5870459 YP_001668905.1 CDS PputGB1_2672 NC_010322.1 2994896 2996041 R PFAM: glycerate kinase; KEGG: pen:PSEEN2878 glycerate kinase; glycerate kinase complement(2994896..2996041) Pseudomonas putida GB-1 5870460 YP_001668906.1 CDS PputGB1_2673 NC_010322.1 2996167 2997264 R PFAM: sugar diacid recognition domain protein; KEGG: pen:PSEEN2879 sugar diacid utilization regulator; transcriptional regulator CdaR complement(2996167..2997264) Pseudomonas putida GB-1 5870461 YP_001668907.1 CDS PputGB1_2674 NC_010322.1 2997428 2998756 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator superfamily transporter 2997428..2998756 Pseudomonas putida GB-1 5870462 YP_001668908.1 CDS PputGB1_2675 NC_010322.1 2998943 3000463 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN3126 ferredoxin reductase component; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2998943..3000463 Pseudomonas putida GB-1 5870463 YP_001668909.1 CDS PputGB1_2676 NC_010322.1 3000536 3001546 D PFAM: aldo/keto reductase; KEGG: pen:PSEEN3127 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3000536..3001546 Pseudomonas putida GB-1 5870464 YP_001668910.1 CDS PputGB1_2677 NC_010322.1 3001642 3002739 D FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 3001642..3002739 Pseudomonas putida GB-1 5870465 YP_001668911.1 CDS PputGB1_2678 NC_010322.1 3002874 3003854 R PFAM: luciferase family protein; KEGG: bbr:BB2749 probable monooxygenase; luciferase family protein complement(3002874..3003854) Pseudomonas putida GB-1 5870466 YP_001668912.1 CDS PputGB1_2679 NC_010322.1 3003955 3004866 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3132 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3003955..3004866) Pseudomonas putida GB-1 5870467 YP_001668913.1 CDS PputGB1_2680 NC_010322.1 3004936 3006003 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: pen:PSEEN3133 membrane bound hydrolase; membrane-bound metal-dependent hydrolase complement(3004936..3006003) Pseudomonas putida GB-1 5870468 YP_001668914.1 CDS PputGB1_2681 NC_010322.1 3006069 3007319 R PFAM: outer membrane porin; KEGG: pen:PSEEN3134 benzoate-specific porin; outer membrane porin complement(3006069..3007319) Pseudomonas putida GB-1 5870469 YP_001668915.1 CDS PputGB1_2682 NC_010322.1 3007374 3008591 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: pen:PSEEN3135 benzoate membrane transport protein MFS superfamily); benzoate transporter complement(3007374..3008591) Pseudomonas putida GB-1 5870470 YP_001668916.1 CDS PputGB1_2683 NC_010322.1 3008693 3009607 R TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase complement(3008693..3009607) Pseudomonas putida GB-1 5870471 YP_001668917.1 CDS PputGB1_2684 NC_010322.1 3009636 3010964 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3139 benzoate transport protein (MFS superfamily); major facilitator superfamily transporter complement(3009636..3010964) Pseudomonas putida GB-1 5870472 YP_001668918.1 CDS benD NC_010322.1 3011022 3011783 R catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase complement(3011022..3011783) Pseudomonas putida GB-1 5870473 YP_001668919.1 CDS PputGB1_2686 NC_010322.1 3011929 3012939 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3141 benzoate 1,2-dioxygenase electron transfer component includes: ferredoxin; ferredoxin--NAD(+) reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(3011929..3012939) Pseudomonas putida GB-1 5870474 YP_001668920.1 CDS PputGB1_2687 NC_010322.1 3013012 3013497 R KEGG: pen:PSEEN3142 benzoate 1,2-dioxygenase beta subunit; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; benzoate 1,2-dioxygenase small subunit complement(3013012..3013497) Pseudomonas putida GB-1 5870475 YP_001668921.1 CDS PputGB1_2688 NC_010322.1 3013494 3014867 R TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pen:PSEEN3143 benzoate 1,2-dioxygenase alpha subunit; benzoate 1,2-dioxygenase large subunit complement(3013494..3014867) Pseudomonas putida GB-1 5870476 YP_001668922.1 CDS PputGB1_2689 NC_010322.1 3014980 3015936 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3012 benABC operon transcriptional activator BenR; AraC family transcriptional regulator complement(3014980..3015936) Pseudomonas putida GB-1 5870477 YP_001668923.1 CDS PputGB1_2690 NC_010322.1 3016160 3017215 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pst:PSPTO_3056 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3016160..3017215) Pseudomonas putida GB-1 5870478 YP_001668924.1 CDS proX NC_010322.1 3017294 3018322 R with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit complement(3017294..3018322) Pseudomonas putida GB-1 5870479 YP_001668925.1 CDS PputGB1_2692 NC_010322.1 3018393 3019346 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_3059 glycine betaine/L-proline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3018393..3019346) Pseudomonas putida GB-1 5870480 YP_001668926.1 CDS PputGB1_2693 NC_010322.1 3019390 3020550 R KEGG: pst:PSPTO_3060 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(3019390..3020550) Pseudomonas putida GB-1 5870481 YP_001668927.1 CDS PputGB1_2694 NC_010322.1 3020912 3021892 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_3061 transcriptional regulator, LysR family; LysR family transcriptional regulator 3020912..3021892 Pseudomonas putida GB-1 5870482 YP_001668928.1 CDS PputGB1_2695 NC_010322.1 3021986 3022870 D KEGG: pfo:Pfl_1951 hypothetical protein; hypothetical protein 3021986..3022870 Pseudomonas putida GB-1 5870483 YP_001668929.1 CDS PputGB1_2696 NC_010322.1 3022873 3023604 R KEGG: pfl:PFL_2174 hypothetical protein; hypothetical protein complement(3022873..3023604) Pseudomonas putida GB-1 5870484 YP_001668930.1 CDS PputGB1_2697 NC_010322.1 3023828 3024619 R TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase; histidinol-phosphate phosphatase complement(3023828..3024619) Pseudomonas putida GB-1 5870485 YP_001668931.1 CDS PputGB1_2698 NC_010322.1 3024682 3025248 R PFAM: protein of unknown function DUF204; KEGG: pau:PA14_26450 hypothetical protein; hypothetical protein complement(3024682..3025248) Pseudomonas putida GB-1 5870486 YP_001668932.1 CDS PputGB1_2699 NC_010322.1 3025537 3026427 D PFAM: UspA domain protein; KEGG: pen:PSEEN2890 universal stress protein; UspA domain-containing protein 3025537..3026427 Pseudomonas putida GB-1 5870487 YP_001668933.1 CDS PputGB1_2700 NC_010322.1 3026499 3027020 R KEGG: pen:PSEEN2891 hypothetical protein; hypothetical protein complement(3026499..3027020) Pseudomonas putida GB-1 5870488 YP_001668934.1 CDS PputGB1_2701 NC_010322.1 3027217 3027963 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: pen:PSEEN2892 hypothetical protein; phytanoyl-CoA dioxygenase complement(3027217..3027963) Pseudomonas putida GB-1 5870489 YP_001668935.1 CDS PputGB1_2702 NC_010322.1 3028018 3028461 R KEGG: pen:PSEEN2893 hypothetical protein; hypothetical protein complement(3028018..3028461) Pseudomonas putida GB-1 5870490 YP_001668936.1 CDS PputGB1_2703 NC_010322.1 3028595 3029464 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2894 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3028595..3029464) Pseudomonas putida GB-1 5870491 YP_001668937.1 CDS PputGB1_2704 NC_010322.1 3029572 3030957 D PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2895 aldehyde dehydrogenase; aldehyde dehydrogenase 3029572..3030957 Pseudomonas putida GB-1 5870492 YP_001668938.1 CDS PputGB1_2705 NC_010322.1 3030996 3032906 R KEGG: pca:Pcar_0793 hypothetical protein; hypothetical protein complement(3030996..3032906) Pseudomonas putida GB-1 5870493 YP_001668939.1 CDS PputGB1_2706 NC_010322.1 3032966 3033865 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2898 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3032966..3033865) Pseudomonas putida GB-1 5870494 YP_001668940.1 CDS PputGB1_2707 NC_010322.1 3034049 3035407 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2899 glutamine synthetase; glutamate--putrescine ligase 3034049..3035407 Pseudomonas putida GB-1 5870495 YP_001668941.1 CDS PputGB1_2708 NC_010322.1 3035473 3036561 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2900 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 3035473..3036561 Pseudomonas putida GB-1 5870496 YP_001668942.1 CDS PputGB1_2709 NC_010322.1 3036575 3037870 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2901 oxidoreductase; FAD dependent oxidoreductase 3036575..3037870 Pseudomonas putida GB-1 5870497 YP_001668943.1 CDS PputGB1_2710 NC_010322.1 3038040 3038717 D KEGG: pen:PSEEN2904 hypothetical protein; hypothetical protein 3038040..3038717 Pseudomonas putida GB-1 5870498 YP_001668944.1 CDS PputGB1_2711 NC_010322.1 3038787 3040163 R KEGG: pen:PSEEN2454 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(3038787..3040163) Pseudomonas putida GB-1 5870499 YP_001668945.1 CDS PputGB1_2712 NC_010322.1 3040310 3041251 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2453 transcriptional regulator, LysR family; LysR family transcriptional regulator 3040310..3041251 Pseudomonas putida GB-1 5870500 YP_001668946.1 CDS PputGB1_2713 NC_010322.1 3041262 3042683 R KEGG: pen:PSEEN2452 lipopolysaccharide biosynthesis sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(3041262..3042683) Pseudomonas putida GB-1 5870501 YP_001668947.1 CDS PputGB1_2714 NC_010322.1 3042861 3043613 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: pen:PSEEN2451 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase complement(3042861..3043613) Pseudomonas putida GB-1 5870502 YP_001668948.1 CDS PputGB1_2715 NC_010322.1 3043613 3044800 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2450 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(3043613..3044800) Pseudomonas putida GB-1 5870503 YP_001668949.1 CDS PputGB1_2716 NC_010322.1 3044797 3045999 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN2449 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 protein complement(3044797..3045999) Pseudomonas putida GB-1 5870504 YP_001668950.1 CDS PputGB1_2717 NC_010322.1 3046049 3047053 R PFAM: protein of unknown function DUF535; KEGG: pen:PSEEN2448 glycosyl transferase; hypothetical protein complement(3046049..3047053) Pseudomonas putida GB-1 5870505 YP_001668951.1 CDS PputGB1_2718 NC_010322.1 3047063 3048040 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2447 glycosyl transferase, group 2 family; glycosyl transferase family protein complement(3047063..3048040) Pseudomonas putida GB-1 5870506 YP_001668952.1 CDS PputGB1_2719 NC_010322.1 3048046 3048570 R KEGG: pen:PSEEN2446 serine O-acetyltransferase; serine O-acetyltransferase complement(3048046..3048570) Pseudomonas putida GB-1 5870507 YP_001668953.1 CDS PputGB1_2720 NC_010322.1 3048579 3049535 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2445 glycosyl transferase; glycosyl transferase family protein complement(3048579..3049535) Pseudomonas putida GB-1 5870508 YP_001668954.1 CDS PputGB1_2721 NC_010322.1 3049528 3050145 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2444 hypothetical protein; hexapaptide repeat-containing transferase complement(3049528..3050145) Pseudomonas putida GB-1 5870509 YP_001668955.1 CDS PputGB1_2722 NC_010322.1 3050250 3051716 R PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN2443 oxidoreductase; GMC oxidoreductase complement(3050250..3051716) Pseudomonas putida GB-1 5870510 YP_001668956.1 CDS PputGB1_2723 NC_010322.1 3051953 3053329 R PFAM: polysaccharide biosynthesis protein; KEGG: pen:PSEEN2442 transporter; polysaccharide biosynthesis protein complement(3051953..3053329) Pseudomonas putida GB-1 5870511 YP_001668957.1 CDS PputGB1_2724 NC_010322.1 3053425 3054951 D KEGG: pen:PSEEN2441 hypothetical protein; hypothetical protein 3053425..3054951 Pseudomonas putida GB-1 5870512 YP_001668958.1 CDS PputGB1_2725 NC_010322.1 3054956 3057556 D KEGG: pen:PSEEN2440 hypothetical protein; hypothetical protein 3054956..3057556 Pseudomonas putida GB-1 5870513 YP_001668959.1 CDS PputGB1_2726 NC_010322.1 3057662 3058636 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN2439 UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase); UDP-glucose 4-epimerase 3057662..3058636 Pseudomonas putida GB-1 5870514 YP_001668960.1 CDS PputGB1_2727 NC_010322.1 3058769 3059575 R KEGG: pen:PSEEN2946 exopolysaccharide biosynthesis related tyrosine-protein kinase; non-specific protein-tyrosine kinase complement(3058769..3059575) Pseudomonas putida GB-1 5870515 YP_001668961.1 CDS PputGB1_2728 NC_010322.1 3059587 3061149 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN2947 exopolysaccharide transport protein; lipopolysaccharide biosynthesis protein complement(3059587..3061149) Pseudomonas putida GB-1 5870516 YP_001668962.1 CDS PputGB1_2729 NC_010322.1 3061169 3062284 R KEGG: pen:PSEEN2948 hypothetical protein; hypothetical protein complement(3061169..3062284) Pseudomonas putida GB-1 5870517 YP_001668963.1 CDS PputGB1_2730 NC_010322.1 3062310 3062867 R PFAM: polysaccharide export protein; KEGG: pen:PSEEN2949 polysaccharide export protein; polysaccharide export protein complement(3062310..3062867) Pseudomonas putida GB-1 5870518 YP_001668964.1 CDS PputGB1_2731 NC_010322.1 3063129 3063305 R KEGG: pen:PSEEN2950 hypothetical protein; hypothetical protein complement(3063129..3063305) Pseudomonas putida GB-1 5870519 YP_001668965.1 CDS PputGB1_2732 NC_010322.1 3063557 3064099 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2382 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(3063557..3064099) Pseudomonas putida GB-1 5870520 YP_001668966.1 CDS PputGB1_2733 NC_010322.1 3064179 3065597 R PFAM: short chain fatty acid transporter; KEGG: pen:PSEEN2481 short-chain fatty acid transporter (scFAT family); short chain fatty acid transporter complement(3064179..3065597) Pseudomonas putida GB-1 5870521 YP_001668967.1 CDS PputGB1_2734 NC_010322.1 3065750 3066406 R KEGG: pen:PSEEN2465 acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(3065750..3066406) Pseudomonas putida GB-1 5870522 YP_001668968.1 CDS PputGB1_2735 NC_010322.1 3066441 3067139 R KEGG: pen:PSEEN2464 acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(3066441..3067139) Pseudomonas putida GB-1 5870523 YP_001668969.1 CDS PputGB1_2736 NC_010322.1 3067280 3068185 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2463 transcriptional regulator, LysR family; LysR family transcriptional regulator 3067280..3068185 Pseudomonas putida GB-1 5870524 YP_001668970.1 CDS PputGB1_2737 NC_010322.1 3068173 3068994 D PFAM: aldo/keto reductase; KEGG: pen:PSEEN2462 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3068173..3068994 Pseudomonas putida GB-1 5870525 YP_001668971.1 CDS dnaE2 NC_010322.1 3069053 3072133 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase complement(3069053..3072133) Pseudomonas putida GB-1 5870526 YP_001668972.1 CDS PputGB1_2739 NC_010322.1 3072130 3073548 R KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; hypothetical protein complement(3072130..3073548) Pseudomonas putida GB-1 5870527 YP_001668973.1 CDS PputGB1_2740 NC_010322.1 3073555 3074175 R KEGG: pen:PSEEN2413 hypothetical protein; hypothetical protein complement(3073555..3074175) Pseudomonas putida GB-1 5870528 YP_001668974.1 CDS PputGB1_2741 NC_010322.1 3074175 3074792 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(3074175..3074792) Pseudomonas putida GB-1 5870529 YP_001668975.1 CDS PputGB1_2742 NC_010322.1 3074885 3075541 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN3015 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 3074885..3075541 Pseudomonas putida GB-1 5870530 YP_001668976.1 CDS PputGB1_2743 NC_010322.1 3075557 3076468 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5811 malonate utilization transcriptional regulator; LysR family transcriptional regulator 3075557..3076468 Pseudomonas putida GB-1 5870531 YP_001668977.1 CDS PputGB1_2744 NC_010322.1 3076505 3078565 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2375 putative ferric-citrate TonB-dependent receptor; TonB-dependent receptor complement(3076505..3078565) Pseudomonas putida GB-1 5870532 YP_001668978.1 CDS PputGB1_2745 NC_010322.1 3078669 3080018 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_2512 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3078669..3080018) Pseudomonas putida GB-1 5870533 YP_001668979.1 CDS PputGB1_2746 NC_010322.1 3080053 3080376 R PFAM: NIPSNAP family containing protein; KEGG: pna:Pnap_2711 NIPSNAP family containing protein; NIPSNAP family protein complement(3080053..3080376) Pseudomonas putida GB-1 5870534 YP_001668980.1 CDS PputGB1_2747 NC_010322.1 3080376 3082094 R proposed role in polysaccahride synthesis; putative succinate dehydrogenase complement(3080376..3082094) Pseudomonas putida GB-1 5870535 YP_001668981.1 CDS PputGB1_2748 NC_010322.1 3082091 3082918 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2709 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3082091..3082918) Pseudomonas putida GB-1 5870536 YP_001668982.1 CDS PputGB1_2749 NC_010322.1 3083096 3083968 D PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: psa:PST_2119 transcriptional regulator PobR; AraC family transcriptional regulator 3083096..3083968 Pseudomonas putida GB-1 5870537 YP_001668983.1 CDS PputGB1_2750 NC_010322.1 3083995 3084768 R PFAM: regulatory protein IclR; KEGG: pfo:Pfl_1294 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(3083995..3084768) Pseudomonas putida GB-1 5870538 YP_001668984.1 CDS PputGB1_2751 NC_010322.1 3084834 3086291 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3084834..3086291) Pseudomonas putida GB-1 5870539 YP_001668985.1 CDS PputGB1_2752 NC_010322.1 3086288 3087598 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1292 general substrate transporter; major facilitator superfamily transporter complement(3086288..3087598) Pseudomonas putida GB-1 5870540 YP_001668986.1 CDS PputGB1_2753 NC_010322.1 3087682 3088857 R KEGG: pfo:Pfl_1291 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(3087682..3088857) Pseudomonas putida GB-1 5870541 YP_001668987.1 CDS PputGB1_2757 NC_010322.1 3091606 3092325 R hypothetical protein complement(3091606..3092325) Pseudomonas putida GB-1 5870543 YP_001668988.1 CDS PputGB1_2758 NC_010322.1 3092337 3093557 R PFAM: PAAR repeat-containing protein; KEGG: psp:PSPPH_2282 rhs family protein; PAAR repeat-containing protein complement(3092337..3093557) Pseudomonas putida GB-1 5870544 YP_001668989.1 CDS PputGB1_2759 NC_010322.1 3093554 3094147 R PFAM: Domain of unknown function DUF1795; KEGG: psp:PSPPH_2281 hypothetical protein; hypothetical protein complement(3093554..3094147) Pseudomonas putida GB-1 5870545 YP_001668990.1 CDS PputGB1_2760 NC_010322.1 3094169 3096010 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: psp:PSPPH_5069 rhs family protein; ImpA family type VI secretion-associated protein complement(3094169..3096010) Pseudomonas putida GB-1 5870546 YP_001668991.1 CDS PputGB1_2761 NC_010322.1 3096203 3097318 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_4977 ADP-ribosylglycohydrolase; ADP-ribosylation/crystallin J1 complement(3096203..3097318) Pseudomonas putida GB-1 5870547 YP_001668992.1 CDS PputGB1_2762 NC_010322.1 3097315 3098802 R KEGG: psp:PSPPH_5068 hypothetical protein; hypothetical protein complement(3097315..3098802) Pseudomonas putida GB-1 5870548 YP_001668993.1 CDS PputGB1_2763 NC_010322.1 3099710 3100459 D KEGG: psp:PSPPH_0135 hypothetical protein; hypothetical protein 3099710..3100459 Pseudomonas putida GB-1 5870549 YP_001668994.1 CDS PputGB1_2764 NC_010322.1 3100524 3101063 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: psp:PSPPH_0134 hypothetical protein; type VI secretion protein 3100524..3101063 Pseudomonas putida GB-1 5870550 YP_001668995.1 CDS PputGB1_2765 NC_010322.1 3101078 3102580 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: psp:PSPPH_0133 hypothetical protein; EvpB family type VI secretion protein 3101078..3102580 Pseudomonas putida GB-1 5870551 YP_001668996.1 CDS PputGB1_2766 NC_010322.1 3102607 3103089 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: psp:PSPPH_0132 protein of unknown function (DUF1316) subfamily; type VI secretion system lysozyme-like protein 3102607..3103089 Pseudomonas putida GB-1 5870552 YP_001668997.1 CDS PputGB1_2767 NC_010322.1 3103089 3104909 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879; type VI secretion protein 3103089..3104909 Pseudomonas putida GB-1 5870553 YP_001668998.1 CDS PputGB1_2768 NC_010322.1 3104873 3105943 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: psp:PSPPH_0130 ImpH; type VI secretion protein 3104873..3105943 Pseudomonas putida GB-1 5870554 YP_001668999.1 CDS PputGB1_2769 NC_010322.1 3105940 3108537 D KEGG: psp:PSPPH_0129 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 3105940..3108537 Pseudomonas putida GB-1 5870555 YP_001669000.1 CDS PputGB1_2770 NC_010322.1 3108562 3109284 D KEGG: psp:PSPPH_0128 lipoprotein, putative; hypothetical protein 3108562..3109284 Pseudomonas putida GB-1 5870556 YP_001669001.1 CDS PputGB1_2771 NC_010322.1 3109281 3110624 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: psb:Psyr_4960 protein of unknown function DUF876; type VI secretion protein 3109281..3110624 Pseudomonas putida GB-1 5870557 YP_001669002.1 CDS PputGB1_2772 NC_010322.1 3110621 3111337 D KEGG: psp:PSPPH_0126 hypothetical protein; hypothetical protein 3110621..3111337 Pseudomonas putida GB-1 5870558 YP_001669003.1 CDS PputGB1_2773 NC_010322.1 3111368 3115165 D TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: psp:PSPPH_0125 ImcF-related family; type VI secretion protein IcmF 3111368..3115165 Pseudomonas putida GB-1 5870559 YP_001669004.1 CDS PputGB1_2774 NC_010322.1 3115162 3116070 D KEGG: psp:PSPPH_0124 hypothetical protein; hypothetical protein 3115162..3116070 Pseudomonas putida GB-1 5870560 YP_001669005.1 CDS PputGB1_2775 NC_010322.1 3116067 3118562 D PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0123 OmpA domain protein; OmpA/MotB domain-containing protein 3116067..3118562 Pseudomonas putida GB-1 5870561 YP_001669006.1 CDS PputGB1_2776 NC_010322.1 3118706 3119224 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_0122 hypothetical protein; Hcp1 family type VI secretion system effector 3118706..3119224 Pseudomonas putida GB-1 5870562 YP_001669007.1 CDS PputGB1_2777 NC_010322.1 3119309 3120406 D TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: psp:PSPPH_0121 ImpA-related N-terminal family; ImpA family type VI secretion-associated protein 3119309..3120406 Pseudomonas putida GB-1 5870563 YP_001669008.1 CDS PputGB1_2778 NC_010322.1 3120521 3123037 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pfo:Pfl_3139 excinuclease ABC, A subunit; excinuclease ABC subunit A 3120521..3123037 Pseudomonas putida GB-1 5870564 YP_001669009.1 CDS PputGB1_2779 NC_010322.1 3123125 3123631 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_3796 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 factor 3123125..3123631 Pseudomonas putida GB-1 5870565 YP_001669010.1 CDS PputGB1_2780 NC_010322.1 3123631 3124593 D PFAM: FecR protein; KEGG: pfo:Pfl_3797 putative FecR; anti-FecI sigma factor FecR 3123631..3124593 Pseudomonas putida GB-1 5870566 YP_001669011.1 CDS PputGB1_2781 NC_010322.1 3124695 3127112 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_3798 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3124695..3127112 Pseudomonas putida GB-1 5870567 YP_001669012.1 CDS PputGB1_2782 NC_010322.1 3127229 3128104 R PFAM: Auxin Efflux Carrier; KEGG: pau:PA14_42100 putative permease; auxin efflux carrier complement(3127229..3128104) Pseudomonas putida GB-1 5870568 YP_001669013.1 CDS PputGB1_2783 NC_010322.1 3128531 3129826 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2678 hypothetical protein; major facilitator superfamily transporter 3128531..3129826 Pseudomonas putida GB-1 5870569 YP_001669014.1 CDS PputGB1_2784 NC_010322.1 3129939 3130247 D KEGG: pen:PSEEN2677 hypothetical protein; hypothetical protein 3129939..3130247 Pseudomonas putida GB-1 5870570 YP_001669015.1 CDS PputGB1_2785 NC_010322.1 3130296 3130847 D PFAM: PEBP family protein; KEGG: reu:Reut_B3733 YbhB and YbcL; PEBP family protein 3130296..3130847 Pseudomonas putida GB-1 5870571 YP_001669016.1 CDS PputGB1_2786 NC_010322.1 3131402 3132463 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3131402..3132463 Pseudomonas putida GB-1 5870572 YP_001669017.1 CDS PputGB1_2787 NC_010322.1 3132542 3132823 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: psb:Psyr_2901 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3132542..3132823 Pseudomonas putida GB-1 5870573 YP_001669018.1 CDS PputGB1_2788 NC_010322.1 3132841 3134763 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3152 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3132841..3134763 Pseudomonas putida GB-1 5870574 YP_001669019.1 CDS PputGB1_2789 NC_010322.1 3134760 3135818 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3153 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3134760..3135818 Pseudomonas putida GB-1 5870575 YP_001669020.1 CDS PputGB1_2790 NC_010322.1 3135818 3136834 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3154 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3135818..3136834 Pseudomonas putida GB-1 5870576 YP_001669021.1 CDS PputGB1_2791 NC_010322.1 3136854 3138242 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3155 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 3136854..3138242 Pseudomonas putida GB-1 5870577 YP_001669022.1 CDS PputGB1_2792 NC_010322.1 3138512 3139903 D PFAM: Citrate transporter; KEGG: pen:PSEEN3157 hypothetical protein; citrate transporter 3138512..3139903 Pseudomonas putida GB-1 5870578 YP_001669023.1 CDS PputGB1_2793 NC_010322.1 3139914 3140684 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3139914..3140684 Pseudomonas putida GB-1 5870579 YP_001669024.1 CDS PputGB1_2794 NC_010322.1 3140740 3141219 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3140740..3141219 Pseudomonas putida GB-1 5870580 YP_001669025.1 CDS PputGB1_2795 NC_010322.1 3141287 3143245 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3141287..3143245 Pseudomonas putida GB-1 5870581 YP_001669026.1 CDS PputGB1_2796 NC_010322.1 3143278 3143553 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3160 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3143278..3143553 Pseudomonas putida GB-1 5870582 YP_001669027.1 CDS PputGB1_2797 NC_010322.1 3143674 3146130 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN3161 outer membrane autotransporter; outer membrane autotransporter 3143674..3146130 Pseudomonas putida GB-1 5870583 YP_001669028.1 CDS PputGB1_2798 NC_010322.1 3146127 3146750 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3162 transporter, LysE family; lysine exporter protein LysE/YggA complement(3146127..3146750) Pseudomonas putida GB-1 5870584 YP_001669029.1 CDS PputGB1_2799 NC_010322.1 3146882 3147691 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3163 transcriptional regulator, AraC family; AraC family transcriptional regulator 3146882..3147691 Pseudomonas putida GB-1 5870585 YP_001669030.1 CDS PputGB1_2800 NC_010322.1 3147807 3148421 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA 3147807..3148421 Pseudomonas putida GB-1 5870586 YP_001669031.1 CDS PputGB1_2801 NC_010322.1 3148369 3149094 R PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; metallophosphoesterase complement(3148369..3149094) Pseudomonas putida GB-1 5870587 YP_001669032.1 CDS PputGB1_2802 NC_010322.1 3149170 3149685 D KEGG: pen:PSEEN3166 hypothetical protein; hypothetical protein 3149170..3149685 Pseudomonas putida GB-1 5870588 YP_001669033.1 CDS PputGB1_2803 NC_010322.1 3149761 3150504 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rca:Rcas_0871 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3149761..3150504 Pseudomonas putida GB-1 5870589 YP_001669034.1 CDS PputGB1_2804 NC_010322.1 3150501 3150743 D KEGG: pen:PSEEN3168 hypothetical protein; hypothetical protein 3150501..3150743 Pseudomonas putida GB-1 5870590 YP_001669035.1 CDS PputGB1_2805 NC_010322.1 3150748 3151248 R KEGG: pen:PSEEN3169 methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase); TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(3150748..3151248) Pseudomonas putida GB-1 5870591 YP_001669036.1 CDS PputGB1_2806 NC_010322.1 3151319 3152128 R KEGG: psb:Psyr_2496 lipopolysaccharide core biosynthesis domain protein; lipopolysaccharide core biosynthesis domain-containing protein complement(3151319..3152128) Pseudomonas putida GB-1 5870592 YP_001669037.1 CDS PputGB1_2807 NC_010322.1 3152283 3153923 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(3152283..3153923) Pseudomonas putida GB-1 5870593 YP_001669038.1 CDS PputGB1_2808 NC_010322.1 3153935 3155713 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_4079 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3153935..3155713) Pseudomonas putida GB-1 5870594 YP_001669039.1 CDS PputGB1_2809 NC_010322.1 3155706 3158171 R KEGG: psa:PST_0618 transporter, putative; transporter complement(3155706..3158171) Pseudomonas putida GB-1 5870595 YP_001669040.1 CDS PputGB1_2810 NC_010322.1 3158187 3159182 R KEGG: psa:PST_0617 glycosyl hydrolase; glycosyl hydrolase complement(3158187..3159182) Pseudomonas putida GB-1 5870596 YP_001669041.1 CDS PputGB1_2811 NC_010322.1 3159204 3160562 R PFAM: protein of unknown function DUF1329; KEGG: psa:PST_0616 hypothetical protein; hypothetical protein complement(3159204..3160562) Pseudomonas putida GB-1 5870597 YP_001669042.1 CDS PputGB1_2812 NC_010322.1 3160601 3162556 R PFAM: protein of unknown function DUF1302; KEGG: psa:PST_0615 hypothetical protein; hypothetical protein complement(3160601..3162556) Pseudomonas putida GB-1 5870598 YP_001669043.1 CDS PputGB1_2813 NC_010322.1 3162631 3163209 R PFAM: protein of unknown function DUF1234; KEGG: reu:Reut_A2133 protein of unknown function DUF1234; hypothetical protein complement(3162631..3163209) Pseudomonas putida GB-1 5870599 YP_001669044.1 CDS PputGB1_2814 NC_010322.1 3163403 3164410 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_A2149 helix-turn-helix, AraC type; AraC family transcriptional regulator 3163403..3164410 Pseudomonas putida GB-1 5870600 YP_001669045.1 CDS PputGB1_2815 NC_010322.1 3164435 3164758 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: mgi:Mflv_3012 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(3164435..3164758) Pseudomonas putida GB-1 5870601 YP_001669046.1 CDS PputGB1_2816 NC_010322.1 3164755 3165408 R PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2145 DsbA oxidoreductase; DSBA oxidoreductase complement(3164755..3165408) Pseudomonas putida GB-1 5870602 YP_001669047.1 CDS PputGB1_2817 NC_010322.1 3165413 3166693 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_A2132 general substrate transporter:major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3165413..3166693) Pseudomonas putida GB-1 5870603 YP_001669048.1 CDS PputGB1_2818 NC_010322.1 3166886 3167938 R PFAM: protein of unknown function DUF849; KEGG: reh:H16_B2526 hypothetical protein; hypothetical protein complement(3166886..3167938) Pseudomonas putida GB-1 5870604 YP_001669049.1 CDS PputGB1_2819 NC_010322.1 3167984 3168832 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A2147 taurine dioxygenase; taurine dioxygenase complement(3167984..3168832) Pseudomonas putida GB-1 5870605 YP_001669050.1 CDS PputGB1_2820 NC_010322.1 3168846 3169826 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_1716 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(3168846..3169826) Pseudomonas putida GB-1 5870606 YP_001669051.1 CDS PputGB1_2821 NC_010322.1 3169983 3170399 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pau:PA14_29010 putative transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3169983..3170399) Pseudomonas putida GB-1 5870607 YP_001669052.1 CDS PputGB1_2822 NC_010322.1 3170512 3171747 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pmy:Pmen_3221 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3170512..3171747 Pseudomonas putida GB-1 5870608 YP_001669053.1 CDS PputGB1_2823 NC_010322.1 3171813 3172169 D PFAM: SmpA/OmlA domain protein; KEGG: pap:PSPA7_5598 osmotically inducible lipoprotein OsmE; SmpA/OmlA domain-containing protein 3171813..3172169 Pseudomonas putida GB-1 5870609 YP_001669054.1 CDS PputGB1_2824 NC_010322.1 3172171 3172530 R KEGG: pfo:Pfl_3288 hypothetical protein; hypothetical protein complement(3172171..3172530) Pseudomonas putida GB-1 5870610 YP_001669055.1 CDS PputGB1_2825 NC_010322.1 3172790 3173104 D hypothetical protein 3172790..3173104 Pseudomonas putida GB-1 5870611 YP_001669056.1 CDS PputGB1_2826 NC_010322.1 3173216 3173416 D hypothetical protein 3173216..3173416 Pseudomonas putida GB-1 5870612 YP_001669057.1 CDS PputGB1_2827 NC_010322.1 3173520 3173735 D hypothetical protein 3173520..3173735 Pseudomonas putida GB-1 5870613 YP_001669058.1 CDS PputGB1_2828 NC_010322.1 3173794 3173916 R hypothetical protein complement(3173794..3173916) Pseudomonas putida GB-1 5870614 YP_001669059.1 CDS PputGB1_2829 NC_010322.1 3173974 3174309 R hypothetical protein complement(3173974..3174309) Pseudomonas putida GB-1 5870615 YP_001669060.1 CDS PputGB1_2830 NC_010322.1 3174377 3174907 R KEGG: yli:YALI0A15081g hypothetical protein; acetyltransferase complement(3174377..3174907) Pseudomonas putida GB-1 5870616 YP_001669061.1 CDS PputGB1_2831 NC_010322.1 3175061 3175429 R KEGG: pen:PSEEN3170 hypothetical protein; hypothetical protein complement(3175061..3175429) Pseudomonas putida GB-1 5870617 YP_001669062.1 CDS PputGB1_2832 NC_010322.1 3175898 3175996 R hypothetical protein complement(3175898..3175996) Pseudomonas putida GB-1 5870618 YP_001669063.1 CDS PputGB1_2833 NC_010322.1 3176104 3176391 R KEGG: syn:slr0334 hypothetical protein; hypothetical protein complement(3176104..3176391) Pseudomonas putida GB-1 5870619 YP_001669064.1 CDS PputGB1_2834 NC_010322.1 3176636 3177325 D PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN2273 hypothetical protein; hypothetical protein 3176636..3177325 Pseudomonas putida GB-1 5870620 YP_001669065.1 CDS PputGB1_2835 NC_010322.1 3177411 3177575 D hypothetical protein 3177411..3177575 Pseudomonas putida GB-1 5870621 YP_001669066.1 CDS PputGB1_2836 NC_010322.1 3177596 3179182 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3176 ABC transporte, ATP binding protein; ABC transporter-like protein 3177596..3179182 Pseudomonas putida GB-1 5870622 YP_001669067.1 CDS PputGB1_2837 NC_010322.1 3179379 3180572 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2927 transporter; major facilitator superfamily transporter 3179379..3180572 Pseudomonas putida GB-1 5870623 YP_001669068.1 CDS PputGB1_2838 NC_010322.1 3180534 3181580 R KEGG: pen:PSEEN2928 hypothetical protein; hypothetical protein complement(3180534..3181580) Pseudomonas putida GB-1 5870624 YP_001669069.1 CDS PputGB1_2839 NC_010322.1 3181780 3182619 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3181780..3182619 Pseudomonas putida GB-1 5870625 YP_001669070.1 CDS PputGB1_2840 NC_010322.1 3182760 3184463 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3182760..3184463 Pseudomonas putida GB-1 5870626 YP_001669071.1 CDS PputGB1_2841 NC_010322.1 3184648 3185322 D PFAM: YheO domain protein; KEGG: pen:PSEEN2009 hypothetical protein; YheO domain-containing protein 3184648..3185322 Pseudomonas putida GB-1 5870627 YP_001669072.1 CDS PputGB1_2842 NC_010322.1 3185319 3186236 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN2008 L-serine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 3185319..3186236 Pseudomonas putida GB-1 5870628 YP_001669073.1 CDS PputGB1_2843 NC_010322.1 3186422 3187519 D TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN2366 carboxynorspermidine decarboxylase NspC; carboxynorspermidine decarboxylase 3186422..3187519 Pseudomonas putida GB-1 5870629 YP_001669074.1 CDS PputGB1_2844 NC_010322.1 3187598 3188797 D PFAM: Saccharopine dehydrogenase; KEGG: pen:PSEEN2365 hypothetical protein; saccharopine dehydrogenase 3187598..3188797 Pseudomonas putida GB-1 5870630 YP_001669075.1 CDS PputGB1_2845 NC_010322.1 3188855 3189901 R PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2364 hypothetical protein; type 11 methyltransferase complement(3188855..3189901) Pseudomonas putida GB-1 5870631 YP_001669076.1 CDS PputGB1_2846 NC_010322.1 3190146 3191483 D KEGG: pen:PSEEN3359 UDP-glucose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3190146..3191483 Pseudomonas putida GB-1 5870632 YP_001669077.1 CDS PputGB1_2847 NC_010322.1 3191471 3192445 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN3360 UDP-glucuronate 5'-epimerase; NAD-dependent epimerase/dehydratase 3191471..3192445 Pseudomonas putida GB-1 5870633 YP_001669078.1 CDS PputGB1_2848 NC_010322.1 3192480 3193223 D PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN3361 glycosyl transferase, group 2 family; glycosyl transferase family protein 3192480..3193223 Pseudomonas putida GB-1 5870634 YP_001669079.1 CDS PputGB1_2849 NC_010322.1 3193220 3193492 D PFAM: lipid A biosynthesis domain protein; KEGG: pen:PSEEN3362 hypothetical protein; lipid A biosynthesis domain-containing protein 3193220..3193492 Pseudomonas putida GB-1 5870635 YP_001669080.1 CDS PputGB1_2850 NC_010322.1 3193497 3195023 D PFAM: glycosyl transferase family 39; KEGG: pen:PSEEN3363 hypothetical protein; glycosyl transferase family protein 3193497..3195023 Pseudomonas putida GB-1 5870636 YP_001669081.1 CDS PputGB1_2851 NC_010322.1 3195004 3196569 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(3195004..3196569) Pseudomonas putida GB-1 5870637 YP_001669082.1 CDS PputGB1_2852 NC_010322.1 3196715 3197935 D PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2356 hypothetical protein; radical SAM domain-containing protein 3196715..3197935 Pseudomonas putida GB-1 5870638 YP_001669083.1 CDS PputGB1_2853 NC_010322.1 3197926 3198774 D KEGG: pen:PSEEN2355 hypothetical protein; hypothetical protein 3197926..3198774 Pseudomonas putida GB-1 5870639 YP_001669084.1 CDS PputGB1_2854 NC_010322.1 3198865 3199122 R KEGG: bxe:Bxe_A3019 hypothetical protein; hypothetical protein complement(3198865..3199122) Pseudomonas putida GB-1 5870640 YP_001669085.1 CDS PputGB1_2855 NC_010322.1 3199119 3199937 R KEGG: ypi:YpsIP31758_2493 hypothetical protein; hypothetical protein complement(3199119..3199937) Pseudomonas putida GB-1 5870641 YP_001669086.1 CDS PputGB1_2856 NC_010322.1 3199930 3203148 R KEGG: ypi:YpsIP31758_2494 hypothetical protein; hypothetical protein complement(3199930..3203148) Pseudomonas putida GB-1 5870642 YP_001669087.1 CDS PputGB1_2857 NC_010322.1 3203145 3204071 R hypothetical protein complement(3203145..3204071) Pseudomonas putida GB-1 5870643 YP_001669088.1 CDS PputGB1_2858 NC_010322.1 3204068 3206146 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pae:PA0262 hypothetical protein; ImpA family type VI secretion-associated protein complement(3204068..3206146) Pseudomonas putida GB-1 5870644 YP_001669089.1 CDS PputGB1_2859 NC_010322.1 3206160 3207032 R KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein complement(3206160..3207032) Pseudomonas putida GB-1 5870645 YP_001669090.1 CDS PputGB1_2860 NC_010322.1 3207217 3208188 R KEGG: psp:PSPPH_2447 UreA amidolyase-related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein complement(3207217..3208188) Pseudomonas putida GB-1 5870646 YP_001669091.1 CDS PputGB1_2861 NC_010322.1 3208185 3209072 R PFAM: Allophanate hydrolase subunit 1; KEGG: pfl:PFL_4548 allophanate hydrolase subunit 1 family; allophanate hydrolase subunit 1 complement(3208185..3209072) Pseudomonas putida GB-1 5870647 YP_001669092.1 CDS PputGB1_2862 NC_010322.1 3209165 3209923 R PFAM: LamB/YcsF family protein; KEGG: pfl:PFL_4551 hypothetical protein; hypothetical protein complement(3209165..3209923) Pseudomonas putida GB-1 5870648 YP_001669093.1 CDS PputGB1_2863 NC_010322.1 3210044 3210961 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_2444 transcriptional regulator, LysR family; LysR family transcriptional regulator 3210044..3210961 Pseudomonas putida GB-1 5870649 YP_001669094.1 CDS PputGB1_2864 NC_010322.1 3211049 3213115 D TIGRFAM: trehalose synthase; KEGG: psa:PST_0034 trehalose synthase; trehalose synthase 3211049..3213115 Pseudomonas putida GB-1 5870650 YP_001669095.1 CDS PputGB1_2865 NC_010322.1 3213205 3216189 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pfo:Pfl_5637 outer membrane autotransporter barrel; outer membrane autotransporter 3213205..3216189 Pseudomonas putida GB-1 5870651 YP_001669096.1 CDS PputGB1_2866 NC_010322.1 3216464 3218602 D KEGG: rpb:RPB_3423 hypothetical protein; hypothetical protein 3216464..3218602 Pseudomonas putida GB-1 5870652 YP_001669097.1 CDS PputGB1_2867 NC_010322.1 3218737 3219366 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3218737..3219366 Pseudomonas putida GB-1 5870653 YP_001669098.1 CDS PputGB1_2868 NC_010322.1 3219376 3220077 D PFAM: protein of unknown function DUF1275; KEGG: pen:PSEEN2178 hypothetical protein; hypothetical protein 3219376..3220077 Pseudomonas putida GB-1 5870654 YP_001669099.1 CDS PputGB1_2869 NC_010322.1 3220078 3221580 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: stm:STM4290 proline/glycine betaine transporter; proline/glycine betaine transporter complement(3220078..3221580) Pseudomonas putida GB-1 5870655 YP_001669100.1 CDS PputGB1_2870 NC_010322.1 3221721 3222695 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3221721..3222695) Pseudomonas putida GB-1 5870656 YP_001669101.1 CDS PputGB1_2871 NC_010322.1 3222869 3223762 R PFAM: protein of unknown function RIO1; KEGG: pst:PSPTO_0748 hypothetical protein; hypothetical protein complement(3222869..3223762) Pseudomonas putida GB-1 5870657 YP_001669102.1 CDS PputGB1_2872 NC_010322.1 3223850 3225241 R TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: psp:PSPPH_4937 GabA permease; GABA permease complement(3223850..3225241) Pseudomonas putida GB-1 5870658 YP_001669103.1 CDS PputGB1_2873 NC_010322.1 3225392 3226642 R catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase complement(3225392..3226642) Pseudomonas putida GB-1 5870659 YP_001669104.1 CDS PputGB1_2874 NC_010322.1 3226757 3227734 R in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein complement(3226757..3227734) Pseudomonas putida GB-1 5870660 YP_001669105.1 CDS PputGB1_2875 NC_010322.1 3227931 3228626 D regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3227931..3228626 Pseudomonas putida GB-1 5870661 YP_001669106.1 CDS PputGB1_2876 NC_010322.1 3228701 3229381 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2089 DNA-binding response regulator; two component transcriptional regulator 3228701..3229381 Pseudomonas putida GB-1 5870662 YP_001669107.1 CDS PputGB1_2877 NC_010322.1 3229359 3230750 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2088 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3229359..3230750 Pseudomonas putida GB-1 5870663 YP_001669108.1 CDS cysS NC_010322.1 3230784 3232166 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3230784..3232166) Pseudomonas putida GB-1 5870664 YP_001669109.1 CDS PputGB1_2879 NC_010322.1 3232176 3233879 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(3232176..3233879) Pseudomonas putida GB-1 5870665 YP_001669110.1 CDS PputGB1_2880 NC_010322.1 3234128 3234628 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN2085 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); cyclophilin type peptidyl-prolyl cis-trans isomerase 3234128..3234628 Pseudomonas putida GB-1 5870666 YP_001669111.1 CDS PputGB1_2881 NC_010322.1 3234625 3235347 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 3234625..3235347 Pseudomonas putida GB-1 5870667 YP_001669112.1 CDS PputGB1_2882 NC_010322.1 3235414 3237723 R PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN2083 penicillin amidase; peptidase S45 penicillin amidase complement(3235414..3237723) Pseudomonas putida GB-1 5870668 YP_001669113.1 CDS PputGB1_2883 NC_010322.1 3237919 3238293 D KEGG: pen:PSEEN2082 hypothetical protein; hypothetical protein 3237919..3238293 Pseudomonas putida GB-1 5870669 YP_001669114.1 CDS PputGB1_2884 NC_010322.1 3238330 3238518 R KEGG: pen:PSEEN2081 hypothetical protein; hypothetical protein complement(3238330..3238518) Pseudomonas putida GB-1 5870670 YP_001669115.1 CDS PputGB1_2885 NC_010322.1 3238670 3239128 D KEGG: pfl:PFL_0784 hypothetical protein; hypothetical protein 3238670..3239128 Pseudomonas putida GB-1 5870671 YP_001669116.1 CDS PputGB1_2886 NC_010322.1 3239378 3239758 D KEGG: pen:PSEEN2080 hypothetical protein; hypothetical protein 3239378..3239758 Pseudomonas putida GB-1 5870672 YP_001669117.1 CDS PputGB1_2887 NC_010322.1 3239823 3240467 D KEGG: pfl:PFL_0781 hypothetical protein; hypothetical protein 3239823..3240467 Pseudomonas putida GB-1 5870673 YP_001669118.1 CDS PputGB1_2888 NC_010322.1 3240542 3241096 D KEGG: pfl:PFL_0780 hypothetical protein; hypothetical protein 3240542..3241096 Pseudomonas putida GB-1 5870674 YP_001669119.1 CDS PputGB1_2889 NC_010322.1 3241116 3244790 R PFAM: protein of unknown function DUF490; KEGG: pen:PSEEN2079 hypothetical protein; hypothetical protein complement(3241116..3244790) Pseudomonas putida GB-1 5870675 YP_001669120.1 CDS PputGB1_2890 NC_010322.1 3244787 3246529 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN2078 surface antigen; surface antigen (D15) complement(3244787..3246529) Pseudomonas putida GB-1 5870676 YP_001669121.1 CDS PputGB1_2891 NC_010322.1 3246582 3247232 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2077 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3246582..3247232) Pseudomonas putida GB-1 5870677 YP_001669122.1 CDS PputGB1_2892 NC_010322.1 3247395 3248207 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 3247395..3248207 Pseudomonas putida GB-1 5870678 YP_001669123.1 CDS PputGB1_2893 NC_010322.1 3248247 3248999 R KEGG: pen:PSEEN2072 transmembrane regulator PrtR; putative transmembrane anti-sigma factor complement(3248247..3248999) Pseudomonas putida GB-1 5870679 YP_001669124.1 CDS PputGB1_2894 NC_010322.1 3248996 3249517 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2071 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor complement(3248996..3249517) Pseudomonas putida GB-1 5870680 YP_001669125.1 CDS PputGB1_2895 NC_010322.1 3249642 3250694 D PFAM: Catalase domain protein; KEGG: pen:PSEEN2069 catalase; catalase domain-containing protein 3249642..3250694 Pseudomonas putida GB-1 5870681 YP_001669126.1 CDS PputGB1_2896 NC_010322.1 3250691 3251224 D PFAM: cytochrome B561; KEGG: pen:PSEEN2068 cytochrome b561; cytochrome B561 3250691..3251224 Pseudomonas putida GB-1 5870682 YP_001669127.1 CDS PputGB1_2897 NC_010322.1 3251311 3252516 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2067 transporter, MFS family; major facilitator superfamily transporter 3251311..3252516 Pseudomonas putida GB-1 5870683 YP_001669128.1 CDS PputGB1_2898 NC_010322.1 3252598 3253143 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2066 transcriptional regulator; XRE family transcriptional regulator 3252598..3253143 Pseudomonas putida GB-1 5870684 YP_001669129.1 CDS PputGB1_2899 NC_010322.1 3253146 3253445 D KEGG: pen:PSEEN2065 hypothetical protein; hypothetical protein 3253146..3253445 Pseudomonas putida GB-1 5870685 YP_001669130.1 CDS PputGB1_2900 NC_010322.1 3253418 3254032 R PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN2064 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase complement(3253418..3254032) Pseudomonas putida GB-1 5870686 YP_001669131.1 CDS PputGB1_2901 NC_010322.1 3254062 3254793 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2063 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(3254062..3254793) Pseudomonas putida GB-1 5870687 YP_001669132.1 CDS PputGB1_2902 NC_010322.1 3254883 3255446 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN2062 transcriptional regulator, TetR family; TetR family transcriptional regulator 3254883..3255446 Pseudomonas putida GB-1 5870688 YP_001669133.1 CDS PputGB1_2903 NC_010322.1 3255433 3256026 D KEGG: pen:PSEEN2061 hypothetical protein; hypothetical protein 3255433..3256026 Pseudomonas putida GB-1 5870689 YP_001669134.1 CDS PputGB1_2904 NC_010322.1 3256073 3257077 R PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3017 hypothetical protein; bile acid:sodium symporter complement(3256073..3257077) Pseudomonas putida GB-1 5870690 YP_001669135.1 CDS ampC NC_010322.1 3257184 3258326 D PFAM: beta-lactamase; KEGG: pen:PSEEN3018 beta-lactamase class C; beta-lactamase 3257184..3258326 Pseudomonas putida GB-1 5870691 YP_001669136.1 CDS PputGB1_2906 NC_010322.1 3258628 3258960 D KEGG: pen:PSEEN3020 hypothetical protein; hypothetical protein 3258628..3258960 Pseudomonas putida GB-1 5870692 YP_001669137.1 CDS PputGB1_2907 NC_010322.1 3259007 3259318 R KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein complement(3259007..3259318) Pseudomonas putida GB-1 5870693 YP_001669138.1 CDS PputGB1_2908 NC_010322.1 3259459 3259647 R KEGG: pen:PSEEN3023 hypothetical protein; hypothetical protein complement(3259459..3259647) Pseudomonas putida GB-1 5870694 YP_001669139.1 CDS PputGB1_2909 NC_010322.1 3259786 3260106 R PFAM: protein of unknown function DUF74; KEGG: pen:PSEEN3024 hypothetical protein; hypothetical protein complement(3259786..3260106) Pseudomonas putida GB-1 5870695 YP_001669140.1 CDS PputGB1_2910 NC_010322.1 3260177 3261061 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3025 hypothetical protein; hypothetical protein complement(3260177..3261061) Pseudomonas putida GB-1 5870696 YP_001669141.1 CDS PputGB1_2911 NC_010322.1 3261302 3262345 R PFAM: extracellular solute-binding protein family 1; KEGG: pfl:PFL_2704 extracellular solute-binding protein, PotD/PotF family; extracellular solute-binding protein complement(3261302..3262345) Pseudomonas putida GB-1 5870697 YP_001669142.1 CDS PputGB1_2912 NC_010322.1 3262523 3264475 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pfl:PFL_2703 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 3262523..3264475 Pseudomonas putida GB-1 5870698 YP_001669143.1 CDS PputGB1_2913 NC_010322.1 3264515 3265114 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pau:PA14_65950 putative transcriptional regulator; XRE family transcriptional regulator 3264515..3265114 Pseudomonas putida GB-1 5870699 YP_001669144.1 CDS PputGB1_2914 NC_010322.1 3265195 3266397 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:Pfl_2451 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3265195..3266397 Pseudomonas putida GB-1 5870700 YP_001669145.1 CDS PputGB1_2915 NC_010322.1 3266460 3267071 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(3266460..3267071) Pseudomonas putida GB-1 5870701 YP_001669146.1 CDS PputGB1_2916 NC_010322.1 3267205 3268107 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2930 transcriptional regulator, LysR family; LysR family transcriptional regulator 3267205..3268107 Pseudomonas putida GB-1 5870702 YP_001669147.1 CDS PputGB1_2917 NC_010322.1 3268100 3268459 D PFAM: protein of unknown function DUF419; KEGG: pen:PSEEN2931 hypothetical protein; hypothetical protein 3268100..3268459 Pseudomonas putida GB-1 5870703 YP_001669148.1 CDS PputGB1_2918 NC_010322.1 3268498 3268911 R PFAM: protein of unknown function DUF1294; KEGG: pen:PSEEN2932 hypothetical protein; hypothetical protein complement(3268498..3268911) Pseudomonas putida GB-1 5870704 YP_001669149.1 CDS PputGB1_2919 NC_010322.1 3268904 3269734 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3268904..3269734) Pseudomonas putida GB-1 5870705 YP_001669150.1 CDS PputGB1_2920 NC_010322.1 3270034 3271668 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: pen:PSEEN2935 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3270034..3271668 Pseudomonas putida GB-1 5870706 YP_001669151.1 CDS PputGB1_2921 NC_010322.1 3271863 3272429 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pen:PSEEN2937 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3271863..3272429 Pseudomonas putida GB-1 5870707 YP_001669152.1 CDS PputGB1_2922 NC_010322.1 3272426 3272995 D KEGG: pen:PSEEN2938 hypothetical protein; hypothetical protein 3272426..3272995 Pseudomonas putida GB-1 5870708 YP_001669153.1 CDS PputGB1_2923 NC_010322.1 3273293 3273733 D KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 3273293..3273733 Pseudomonas putida GB-1 5870709 YP_001669154.1 CDS PputGB1_2924 NC_010322.1 3273735 3274313 D KEGG: pen:PSEEN2940 hypothetical protein; hypothetical protein 3273735..3274313 Pseudomonas putida GB-1 5870710 YP_001669155.1 CDS PputGB1_2925 NC_010322.1 3274363 3275814 D KEGG: pen:PSEEN2941 hypothetical protein; hypothetical protein 3274363..3275814 Pseudomonas putida GB-1 5870711 YP_001669156.1 CDS PputGB1_2926 NC_010322.1 3275877 3276557 D PFAM: peptidase C39 bacteriocin processing; KEGG: pen:PSEEN2942 hypothetical protein; peptidase C39 bacteriocin processing 3275877..3276557 Pseudomonas putida GB-1 5870712 YP_001669157.1 CDS PputGB1_2927 NC_010322.1 3276603 3277355 D KEGG: pen:PSEEN2943 hypothetical protein; hypothetical protein 3276603..3277355 Pseudomonas putida GB-1 5870713 YP_001669158.1 CDS PputGB1_2928 NC_010322.1 3277402 3278682 D KEGG: pen:PSEEN2944 hypothetical protein; hypothetical protein 3277402..3278682 Pseudomonas putida GB-1 5870714 YP_001669159.1 CDS PputGB1_2929 NC_010322.1 3278819 3281020 D PFAM: sulfatase; KEGG: pen:PSEEN2945 sulfatase; sulfatase 3278819..3281020 Pseudomonas putida GB-1 5870715 YP_001669160.1 CDS PputGB1_2930 NC_010322.1 3281115 3281843 D PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pen:PSEEN3016 hypothetical protein; hypothetical protein 3281115..3281843 Pseudomonas putida GB-1 5870716 YP_001669161.1 CDS PputGB1_2931 NC_010322.1 3281862 3282485 R TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: pen:PSEEN2100 urease accessory protein UreG; urease accessory protein UreG complement(3281862..3282485) Pseudomonas putida GB-1 5870717 YP_001669162.1 CDS PputGB1_2932 NC_010322.1 3282497 3283171 R PFAM: Urease accessory protein UreF; KEGG: pen:PSEEN2099 urease accessory protein UreF; urease accessory protein UreF complement(3282497..3283171) Pseudomonas putida GB-1 5870718 YP_001669163.1 CDS PputGB1_2933 NC_010322.1 3283171 3283716 R PFAM: HupE/UreJ protein; KEGG: pen:PSEEN2098 urease accessory protein UreJ; HupE/UreJ protein complement(3283171..3283716) Pseudomonas putida GB-1 5870719 YP_001669164.1 CDS ureE NC_010322.1 3283735 3284232 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(3283735..3284232) Pseudomonas putida GB-1 5870720 YP_001669165.1 CDS ureC NC_010322.1 3284243 3285946 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(3284243..3285946) Pseudomonas putida GB-1 5870721 YP_001669166.1 CDS ureB NC_010322.1 3285943 3286260 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(3285943..3286260) Pseudomonas putida GB-1 5870722 YP_001669167.1 CDS ureA NC_010322.1 3286280 3286582 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(3286280..3286582) Pseudomonas putida GB-1 5870723 YP_001669168.1 CDS PputGB1_2938 NC_010322.1 3286592 3287425 R PFAM: Urease accessory protein UreD; KEGG: pen:PSEEN2093 urease accessory protein UreD; urease accessory protein UreD complement(3286592..3287425) Pseudomonas putida GB-1 5870724 YP_001669169.1 CDS PputGB1_2939 NC_010322.1 3287699 3288613 R PFAM: integrase family protein; KEGG: pen:PSEEN2998 site-specific recombinase, phage integrase family; integrase family protein complement(3287699..3288613) Pseudomonas putida GB-1 5870725 YP_001669170.1 CDS PputGB1_2940 NC_010322.1 3288828 3290009 D PFAM: NnrS family protein; KEGG: pen:PSEEN3000 NnrS protein; NnrS family protein 3288828..3290009 Pseudomonas putida GB-1 5870726 YP_001669171.1 CDS PputGB1_2943 NC_010322.1 3291207 3293468 R PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: pen:PSEEN2644 hypothetical protein; DEAD/DEAH box helicase complement(3291207..3293468) Pseudomonas putida GB-1 5870728 YP_001669172.1 CDS PputGB1_2944 NC_010322.1 3293465 3295114 R PFAM: VRR-NUC domain protein; KEGG: pen:PSEEN2643 hypothetical protein; VRR-NUC domain-containing protein complement(3293465..3295114) Pseudomonas putida GB-1 5870729 YP_001669173.1 CDS PputGB1_2945 NC_010322.1 3295343 3296653 R PFAM: major facilitator superfamily MFS_1; KEGG: ecw:EcE24377A_4501 phthalate permease family protein; major facilitator superfamily transporter complement(3295343..3296653) Pseudomonas putida GB-1 5870730 YP_001669174.1 CDS PputGB1_2946 NC_010322.1 3296744 3297961 R KEGG: bja:blr3199 hypothetical protein; hypothetical protein complement(3296744..3297961) Pseudomonas putida GB-1 5870731 YP_001669175.1 CDS PputGB1_2947 NC_010322.1 3297982 3299040 R PFAM: Malate/L-lactate dehydrogenase; KEGG: csa:Csal_1752 malate/L-lactate dehydrogenase; malate/L-lactate dehydrogenase complement(3297982..3299040) Pseudomonas putida GB-1 5870732 YP_001669176.1 CDS PputGB1_2948 NC_010322.1 3299076 3300617 R PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_B0321 altronate dehydratase; galactarate dehydratase complement(3299076..3300617) Pseudomonas putida GB-1 5870733 YP_001669177.1 CDS PputGB1_2949 NC_010322.1 3300803 3301756 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_0863 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3300803..3301756) Pseudomonas putida GB-1 5870734 YP_001669178.1 CDS PputGB1_2950 NC_010322.1 3301784 3302731 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3514 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3301784..3302731) Pseudomonas putida GB-1 5870735 YP_001669179.1 CDS PputGB1_2951 NC_010322.1 3302833 3304146 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pol:Bpro_3515 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 3302833..3304146 Pseudomonas putida GB-1 5870736 YP_001669180.1 CDS PputGB1_2952 NC_010322.1 3304213 3305514 D PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4257 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3304213..3305514 Pseudomonas putida GB-1 5870737 YP_001669181.1 CDS PputGB1_2953 NC_010322.1 3305626 3306978 R PFAM: regulatory protein GntR HTH; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3305626..3306978) Pseudomonas putida GB-1 5870738 YP_001669182.1 CDS PputGB1_2954 NC_010322.1 3306978 3308363 R KEGG: pen:PSEEN2632 hypothetical protein; hypothetical protein complement(3306978..3308363) Pseudomonas putida GB-1 5870739 YP_001669183.1 CDS PputGB1_2955 NC_010322.1 3308884 3309906 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN2630 quinone oxidoreductase; alcohol dehydrogenase complement(3308884..3309906) Pseudomonas putida GB-1 5870740 YP_001669184.1 CDS PputGB1_2956 NC_010322.1 3310113 3311027 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2629 transcriptional regulator, LysR family; LysR family transcriptional regulator 3310113..3311027 Pseudomonas putida GB-1 5870741 YP_001669185.1 CDS PputGB1_2957 NC_010322.1 3311138 3312448 D PFAM: integrase family protein; KEGG: mpt:Mpe_A1087 prophage CP4-like integrase; integrase family protein 3311138..3312448 Pseudomonas putida GB-1 5870742 YP_001669186.1 CDS PputGB1_2958 NC_010322.1 3312850 3313308 D PFAM: GCN5-related N-acetyltransferase; KEGG: mmw:Mmwyl1_1781 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3312850..3313308 Pseudomonas putida GB-1 5870743 YP_001669187.1 CDS PputGB1_2959 NC_010322.1 3313441 3313647 R hypothetical protein complement(3313441..3313647) Pseudomonas putida GB-1 5870744 YP_001669188.1 CDS PputGB1_2960 NC_010322.1 3313647 3313889 R hypothetical protein complement(3313647..3313889) Pseudomonas putida GB-1 5870745 YP_001669189.1 CDS PputGB1_2961 NC_010322.1 3314582 3315019 D KEGG: pen:PSEEN3029 chromate transporter; hypothetical protein 3314582..3315019 Pseudomonas putida GB-1 5870746 YP_001669190.1 CDS PputGB1_2962 NC_010322.1 3315024 3317567 D KEGG: pen:PSEEN1307 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3315024..3317567 Pseudomonas putida GB-1 5870747 YP_001669191.1 CDS PputGB1_2963 NC_010322.1 3317697 3318047 D KEGG: cgr:CAGL0J01771g unnamed protein product; hypothetical protein 3317697..3318047 Pseudomonas putida GB-1 5870748 YP_001669192.1 CDS PputGB1_2964 NC_010322.1 3318138 3318518 D KEGG: pfo:Pfl_4134 hypothetical protein; hypothetical protein 3318138..3318518 Pseudomonas putida GB-1 5870749 YP_001669193.1 CDS PputGB1_2965 NC_010322.1 3318561 3319085 R KEGG: mxa:MXAN_2374 hypothetical protein; hypothetical protein complement(3318561..3319085) Pseudomonas putida GB-1 5870750 YP_001669194.1 CDS PputGB1_2966 NC_010322.1 3319232 3321019 D catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 3319232..3321019 Pseudomonas putida GB-1 5870751 YP_001669195.1 CDS PputGB1_2967 NC_010322.1 3321141 3321866 R PFAM: protein of unknown function DUF72; KEGG: psb:Psyr_2383 protein of unknown function DUF72; hypothetical protein complement(3321141..3321866) Pseudomonas putida GB-1 5870752 YP_001669196.1 CDS PputGB1_2968 NC_010322.1 3323054 3323278 D hypothetical protein 3323054..3323278 Pseudomonas putida GB-1 5870753 YP_001669197.1 CDS PputGB1_2969 NC_010322.1 3323322 3323510 R hypothetical protein complement(3323322..3323510) Pseudomonas putida GB-1 5870754 YP_001669198.1 CDS PputGB1_2970 NC_010322.1 3324075 3324281 D PFAM: regulatory protein LysR; helix-turn-helix Fis-type; KEGG: azc:AZC_0246 transcriptional regulator; LysR family transcriptional regulator 3324075..3324281 Pseudomonas putida GB-1 5870755 YP_001669199.1 CDS PputGB1_2971 NC_010322.1 3324278 3325159 R PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit complement(3324278..3325159) Pseudomonas putida GB-1 5870756 YP_001669200.1 CDS PputGB1_2972 NC_010322.1 3325150 3325428 R PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein complement(3325150..3325428) Pseudomonas putida GB-1 5870757 YP_001669201.1 CDS PputGB1_2973 NC_010322.1 3325595 3325978 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_1960 transcriptional regulator, AraC family; AraC family transcriptional regulator 3325595..3325978 Pseudomonas putida GB-1 5870758 YP_001669202.1 CDS PputGB1_2974 NC_010322.1 3326046 3326318 R PFAM: Propeptide PepSY amd peptidase M4; KEGG: pmy:Pmen_2589 hypothetical protein; peptidase complement(3326046..3326318) Pseudomonas putida GB-1 5870759 YP_001669203.1 CDS PputGB1_2975 NC_010322.1 3326734 3326961 R hypothetical protein complement(3326734..3326961) Pseudomonas putida GB-1 5870760 YP_001669204.1 CDS PputGB1_2976 NC_010322.1 3327195 3327515 R PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2430 NUDIX hydrolase; NUDIX hydrolase complement(3327195..3327515) Pseudomonas putida GB-1 5870761 YP_001669205.1 CDS PputGB1_2977 NC_010322.1 3327671 3328123 D KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein 3327671..3328123 Pseudomonas putida GB-1 5870762 YP_001669206.1 CDS PputGB1_2978 NC_010322.1 3328356 3329741 D PFAM: methyltransferase small; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small 3328356..3329741 Pseudomonas putida GB-1 5870763 YP_001669207.1 CDS PputGB1_2979 NC_010322.1 3329835 3331043 R PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6467 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3329835..3331043) Pseudomonas putida GB-1 5870764 YP_001669208.1 CDS PputGB1_2980 NC_010322.1 3331093 3332121 R PFAM: dienelactone hydrolase; KEGG: rso:RSc0206 hypothetical signal peptide protein; dienelactone hydrolase complement(3331093..3332121) Pseudomonas putida GB-1 5870765 YP_001669209.1 CDS PputGB1_2981 NC_010322.1 3332327 3333292 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 3332327..3333292 Pseudomonas putida GB-1 5870766 YP_001669210.1 CDS PputGB1_2982 NC_010322.1 3333344 3333571 R hypothetical protein complement(3333344..3333571) Pseudomonas putida GB-1 5870767 YP_001669211.1 CDS PputGB1_2983 NC_010322.1 3333830 3334120 R KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein complement(3333830..3334120) Pseudomonas putida GB-1 5870768 YP_001669212.1 CDS PputGB1_2984 NC_010322.1 3335255 3336457 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1875 glutathione-dependent formaldehyde dehydrogenase; alcohol dehydrogenase 3335255..3336457 Pseudomonas putida GB-1 5870769 YP_001669213.1 CDS PputGB1_2985 NC_010322.1 3336471 3336704 D KEGG: pmy:Pmen_2271 hypothetical protein; hypothetical protein 3336471..3336704 Pseudomonas putida GB-1 5870770 YP_001669214.1 CDS PputGB1_2986 NC_010322.1 3336738 3338063 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_2360 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3336738..3338063 Pseudomonas putida GB-1 5870771 YP_001669215.1 CDS PputGB1_2987 NC_010322.1 3338143 3338685 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase 3338143..3338685 Pseudomonas putida GB-1 5870772 YP_001669216.1 CDS PputGB1_2988 NC_010322.1 3338758 3339900 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_4750 sensor histidine kinase; histidine kinase complement(3338758..3339900) Pseudomonas putida GB-1 5870773 YP_001669217.1 CDS PputGB1_2989 NC_010322.1 3340086 3340448 D PFAM: response regulator receiver; KEGG: rpc:RPC_1228 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3340086..3340448 Pseudomonas putida GB-1 5870774 YP_001669218.1 CDS PputGB1_2990 NC_010322.1 3340520 3340786 R KEGG: pfo:Pfl_2790 hypothetical protein; hypothetical protein complement(3340520..3340786) Pseudomonas putida GB-1 5870775 YP_001669219.1 CDS PputGB1_2991 NC_010322.1 3340996 3341412 D PFAM: response regulator receiver; KEGG: mex:Mext_3363 response regulator receiver; response regulator receiver protein 3340996..3341412 Pseudomonas putida GB-1 5870776 YP_001669220.1 CDS PputGB1_2992 NC_010322.1 3341579 3342388 D PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_3182 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3341579..3342388 Pseudomonas putida GB-1 5870777 YP_001669221.1 CDS PputGB1_2993 NC_010322.1 3342385 3343566 D KEGG: psp:PSPPH_1479 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3342385..3343566 Pseudomonas putida GB-1 5870778 YP_001669222.1 CDS PputGB1_2994 NC_010322.1 3343688 3344134 D PFAM: protein of unknown function DUF1452; KEGG: pen:PSEEN3078 hypothetical protein; hypothetical protein 3343688..3344134 Pseudomonas putida GB-1 5870779 YP_001669223.1 CDS PputGB1_2995 NC_010322.1 3344108 3344533 R PFAM: response regulator receiver; KEGG: pfl:PFL_4716 response regulator; response regulator receiver protein complement(3344108..3344533) Pseudomonas putida GB-1 5870780 YP_001669224.1 CDS PputGB1_2996 NC_010322.1 3344616 3345050 R KEGG: psb:Psyr_2382 conservedhypothetical protein; hypothetical protein complement(3344616..3345050) Pseudomonas putida GB-1 5870781 YP_001669225.1 CDS PputGB1_2997 NC_010322.1 3345047 3345355 R KEGG: psa:PST_0215 hypothetical protein; hypothetical protein complement(3345047..3345355) Pseudomonas putida GB-1 5870782 YP_001669226.1 CDS PputGB1_2998 NC_010322.1 3345492 3345797 R KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein complement(3345492..3345797) Pseudomonas putida GB-1 5870783 YP_001669227.1 CDS PputGB1_2999 NC_010322.1 3345881 3346936 R PFAM: peptidase M42 family protein; KEGG: pfl:PFL_4725 glutamyl aminopeptidase, M42 family; peptidase M42 family protein complement(3345881..3346936) Pseudomonas putida GB-1 5870784 YP_001669228.1 CDS PputGB1_3000 NC_010322.1 3346969 3347493 R KEGG: pfo:Pfl_2692 hypothetical protein; hypothetical protein complement(3346969..3347493) Pseudomonas putida GB-1 5870785 YP_001669229.1 CDS PputGB1_3001 NC_010322.1 3347690 3348547 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2411 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3347690..3348547 Pseudomonas putida GB-1 5870786 YP_001669230.1 CDS PputGB1_3002 NC_010322.1 3348600 3348761 R hypothetical protein complement(3348600..3348761) Pseudomonas putida GB-1 5870787 YP_001669231.1 CDS PputGB1_3003 NC_010322.1 3348915 3349418 D PFAM: CinA domain protein; KEGG: pfo:Pfl_2789 CinA-like; CinA domain-containing protein 3348915..3349418 Pseudomonas putida GB-1 5870788 YP_001669232.1 CDS PputGB1_3004 NC_010322.1 3349430 3349936 D KEGG: psb:Psyr_0770 hypothetical protein; hypothetical protein 3349430..3349936 Pseudomonas putida GB-1 5870789 YP_001669233.1 CDS PputGB1_3005 NC_010322.1 3349946 3350389 D KEGG: pfl:PFL_4721 hypothetical protein; hypothetical protein 3349946..3350389 Pseudomonas putida GB-1 5870790 YP_001669234.1 CDS PputGB1_3006 NC_010322.1 3350621 3352375 D PFAM: glycoside hydrolase 15-related; KEGG: xcb:XC_3171 hypothetical protein; glycoside hydrolase 15-related 3350621..3352375 Pseudomonas putida GB-1 5870791 YP_001669235.1 CDS PputGB1_3007 NC_010322.1 3352467 3352931 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pap:PSPA7_3133 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3352467..3352931 Pseudomonas putida GB-1 5870792 YP_001669236.1 CDS PputGB1_3008 NC_010322.1 3353010 3353258 D KEGG: pen:PSEEN2766 hypothetical protein; hypothetical protein 3353010..3353258 Pseudomonas putida GB-1 5870793 YP_001669237.1 CDS PputGB1_3009 NC_010322.1 3353351 3354490 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_2676 glutathione-independent formaldehyde dehydrogenase; alcohol dehydrogenase complement(3353351..3354490) Pseudomonas putida GB-1 5870794 YP_001669238.1 CDS PputGB1_3010 NC_010322.1 3354671 3355468 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl_1868 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth complement(3354671..3355468) Pseudomonas putida GB-1 5870795 YP_001669239.1 CDS PputGB1_3011 NC_010322.1 3355465 3355707 R KEGG: pfo:Pfl_2029 hypothetical protein; hypothetical protein complement(3355465..3355707) Pseudomonas putida GB-1 5870796 YP_001669240.1 CDS PputGB1_3012 NC_010322.1 3355874 3356413 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase 3355874..3356413 Pseudomonas putida GB-1 5870797 YP_001669241.1 CDS PputGB1_3013 NC_010322.1 3356484 3356648 R KEGG: pfo:Pfl_3702 hypothetical protein; hypothetical protein complement(3356484..3356648) Pseudomonas putida GB-1 5870798 YP_001669242.1 CDS PputGB1_3014 NC_010322.1 3356922 3357152 R KEGG: pen:PSEEN2769 metallothionein; metallothionein complement(3356922..3357152) Pseudomonas putida GB-1 5870799 YP_001669243.1 CDS PputGB1_3015 NC_010322.1 3357339 3358460 R ATP-dependent carboxylate-amine ligase; carboxylate-amine ligase complement(3357339..3358460) Pseudomonas putida GB-1 5870800 YP_001669244.1 CDS PputGB1_3016 NC_010322.1 3358453 3359406 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small complement(3358453..3359406) Pseudomonas putida GB-1 5870801 YP_001669245.1 CDS PputGB1_3017 NC_010322.1 3359406 3360731 R KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein complement(3359406..3360731) Pseudomonas putida GB-1 5870802 YP_001669246.1 CDS PputGB1_3018 NC_010322.1 3361185 3365300 D KEGG: psa:PST_3560 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase with CheB and CheR activity 3361185..3365300 Pseudomonas putida GB-1 5870803 YP_001669247.1 CDS PputGB1_3019 NC_010322.1 3365882 3367045 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: bur:Bcep18194_B0529 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 3365882..3367045 Pseudomonas putida GB-1 5870804 YP_001669248.1 CDS PputGB1_3020 NC_010322.1 3367068 3368729 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_B0530 choline dehydrogenase; choline dehydrogenase 3367068..3368729 Pseudomonas putida GB-1 5870805 YP_001669249.1 CDS PputGB1_3021 NC_010322.1 3368805 3369890 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B0536 transcriptional regulator, AraC family; AraC family transcriptional regulator 3368805..3369890 Pseudomonas putida GB-1 5870806 YP_001669250.1 CDS PputGB1_3022 NC_010322.1 3369962 3370909 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: bov:BOV_1524 putative glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein; choline ABC transporter periplasmic binding protein complement(3369962..3370909) Pseudomonas putida GB-1 5870807 YP_001669251.1 CDS PputGB1_3023 NC_010322.1 3370965 3371714 R PFAM: class II aldolase/adducin family protein; KEGG: bur:Bcep18194_B0534 hypothetical protein; hypothetical protein complement(3370965..3371714) Pseudomonas putida GB-1 5870808 YP_001669252.1 CDS PputGB1_3024 NC_010322.1 3371918 3373387 D PFAM: Aldehyde Dehydrogenase; KEGG: reu:Reut_B5835 aldehyde dehydrogenase; aldehyde dehydrogenase 3371918..3373387 Pseudomonas putida GB-1 5870809 YP_001669253.1 CDS PputGB1_3025 NC_010322.1 3373237 3373632 R KEGG: pfl:PFL_2353 hypothetical protein; hypothetical protein complement(3373237..3373632) Pseudomonas putida GB-1 5870810 YP_001669254.1 CDS PputGB1_3026 NC_010322.1 3374043 3374636 D PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_0625 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3374043..3374636 Pseudomonas putida GB-1 5870811 YP_001669255.1 CDS PputGB1_3027 NC_010322.1 3374633 3374992 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: pmy:Pmen_3163 protein of unknown function DUF861, cupin_3; hypothetical protein 3374633..3374992 Pseudomonas putida GB-1 5870812 YP_001669256.1 CDS PputGB1_3028 NC_010322.1 3375258 3375665 D KEGG: pfl:PFL_4824 hypothetical protein; hypothetical protein 3375258..3375665 Pseudomonas putida GB-1 5870813 YP_001669257.1 CDS PputGB1_3029 NC_010322.1 3375970 3377436 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bbr:BB2449 hypothetical protein; hypothetical protein 3375970..3377436 Pseudomonas putida GB-1 5870814 YP_001669258.1 CDS PputGB1_3030 NC_010322.1 3377479 3378966 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: bbr:BB2448 hypothetical protein; hypothetical protein 3377479..3378966 Pseudomonas putida GB-1 5870815 YP_001669259.1 CDS PputGB1_3031 NC_010322.1 3379304 3380203 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pfl:PFL_2353 hypothetical protein; hypothetical protein complement(3379304..3380203) Pseudomonas putida GB-1 5870816 YP_001669260.1 CDS PputGB1_3032 NC_010322.1 3380324 3381388 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: dac:Daci_4497 male sterility domain; hypothetical protein complement(3380324..3381388) Pseudomonas putida GB-1 5870817 YP_001669261.1 CDS PputGB1_3033 NC_010322.1 3381462 3381863 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pfl:PFL_2355 transcriptional regulator, MerR family; MerR family transcriptional regulator 3381462..3381863 Pseudomonas putida GB-1 5870818 YP_001669262.1 CDS PputGB1_3034 NC_010322.1 3382017 3382637 R PFAM: integrase family protein; KEGG: psa:PST_3407 site-specific recombinase, phage integrase family; integrase family protein complement(3382017..3382637) Pseudomonas putida GB-1 5870819 YP_001669263.1 CDS PputGB1_3035 NC_010322.1 3382808 3383602 D PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: dac:Daci_2795 3''-kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 3382808..3383602 Pseudomonas putida GB-1 5870820 YP_001669264.1 CDS PputGB1_3036 NC_010322.1 3383714 3384271 D KEGG: psp:PSPPH_0157 hypothetical protein; hypothetical protein 3383714..3384271 Pseudomonas putida GB-1 5870821 YP_001669265.1 CDS PputGB1_3037 NC_010322.1 3384567 3386057 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: mms:mma_0788 hypothetical protein; hypothetical protein 3384567..3386057 Pseudomonas putida GB-1 5870822 YP_001669266.1 CDS PputGB1_3038 NC_010322.1 3386121 3387416 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: shn:Shewana3_2989 protein of unknown function DUF1254; hypothetical protein 3386121..3387416 Pseudomonas putida GB-1 5870823 YP_001669267.1 CDS PputGB1_3039 NC_010322.1 3387818 3388291 D PFAM: OsmC family protein; KEGG: aci:ACIAD0918 hypothetical protein; OsmC family protein 3387818..3388291 Pseudomonas putida GB-1 5870824 YP_001669268.1 CDS PputGB1_3040 NC_010322.1 3388390 3388740 D KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 3388390..3388740 Pseudomonas putida GB-1 5870825 YP_001669269.1 CDS PputGB1_3041 NC_010322.1 3388830 3390083 D PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 3388830..3390083 Pseudomonas putida GB-1 5870826 YP_001669270.1 CDS PputGB1_3042 NC_010322.1 3390080 3391543 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 3390080..3391543 Pseudomonas putida GB-1 5870827 YP_001669271.1 CDS PputGB1_3043 NC_010322.1 3391540 3394686 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 3391540..3394686 Pseudomonas putida GB-1 5870828 YP_001669272.1 CDS PputGB1_3044 NC_010322.1 3394857 3395834 R KEGG: pmy:Pmen_3461 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(3394857..3395834) Pseudomonas putida GB-1 5870829 YP_001669273.1 CDS PputGB1_3045 NC_010322.1 3396145 3397827 D TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: oan:Oant_3482 YidE/YbjL duplication; YidE/YbjL duplication 3396145..3397827 Pseudomonas putida GB-1 5870830 YP_001669274.1 CDS PputGB1_3046 NC_010322.1 3398040 3399332 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rru:Rru_A1313 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 3398040..3399332 Pseudomonas putida GB-1 5870831 YP_001669275.1 CDS PputGB1_3047 NC_010322.1 3399383 3400051 D KEGG: pfl:PFL_2838 lipoprotein, putative; putative lipoprotein 3399383..3400051 Pseudomonas putida GB-1 5870832 YP_001669276.1 CDS PputGB1_3048 NC_010322.1 3400110 3401138 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mtc:MT3167 transcriptional regulator, AraC family; AraC family transcriptional regulator 3400110..3401138 Pseudomonas putida GB-1 5870833 YP_001669277.1 CDS PputGB1_3049 NC_010322.1 3401146 3402774 R PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3289 ion mechanosensitive channel; mechanosensitive ion channel protein MscS complement(3401146..3402774) Pseudomonas putida GB-1 5870834 YP_001669278.1 CDS PputGB1_3050 NC_010322.1 3402818 3405346 R PFAM: Spermine synthase; KEGG: pfl:PFL_2841 spermine/spermidine synthase family protein; spermine synthase complement(3402818..3405346) Pseudomonas putida GB-1 5870835 YP_001669279.1 CDS PputGB1_3051 NC_010322.1 3405428 3406996 R PFAM: sulfatase; KEGG: pfl:PFL_2842 sulfatase family protein; sulfatase complement(3405428..3406996) Pseudomonas putida GB-1 5870836 YP_001669280.1 CDS PputGB1_3052 NC_010322.1 3407081 3408091 R KEGG: pfl:PFL_2843 nonspecific acid phosphatase; nonspecific acid phosphatase complement(3407081..3408091) Pseudomonas putida GB-1 5870837 YP_001669281.1 CDS PputGB1_3053 NC_010322.1 3408136 3409446 R KEGG: pfl:PFL_2844 hypothetical protein; hypothetical protein complement(3408136..3409446) Pseudomonas putida GB-1 5870838 YP_001669282.1 CDS PputGB1_3054 NC_010322.1 3409443 3411044 R PFAM: TPR repeat-containing protein; von Willebrand factor type A; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pfl:PFL_2845 TPR domain protein, putative; hypothetical protein complement(3409443..3411044) Pseudomonas putida GB-1 5870839 YP_001669283.1 CDS PputGB1_3055 NC_010322.1 3411041 3412015 R PFAM: von Willebrand factor type A; KEGG: pfl:PFL_2846 von Willebrand factor type A domain protein; von Willebrand factor type A complement(3411041..3412015) Pseudomonas putida GB-1 5870840 YP_001669284.1 CDS PputGB1_3056 NC_010322.1 3412002 3412499 R KEGG: pfl:PFL_2847 alpha-2 type XI collagen; alpha-2 type XI collagen complement(3412002..3412499) Pseudomonas putida GB-1 5870841 YP_001669285.1 CDS PputGB1_3057 NC_010322.1 3412496 3413446 R PFAM: protein of unknown function DUF58; KEGG: pfl:PFL_2848 hypothetical protein; hypothetical protein complement(3412496..3413446) Pseudomonas putida GB-1 5870842 YP_001669286.1 CDS PputGB1_3058 NC_010322.1 3413458 3414432 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pfl:PFL_2849 MoxR domain protein; ATPase complement(3413458..3414432) Pseudomonas putida GB-1 5870843 YP_001669287.1 CDS PputGB1_3059 NC_010322.1 3414526 3416841 R PFAM: TPR repeat-containing protein; PBS lyase HEAT domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll2660 hypothetical protein; hypothetical protein complement(3414526..3416841) Pseudomonas putida GB-1 5870844 YP_001669288.1 CDS PputGB1_3060 NC_010322.1 3416820 3417032 R KEGG: bbr:BB2448 hypothetical protein; hypothetical protein complement(3416820..3417032) Pseudomonas putida GB-1 5870845 YP_001669289.1 CDS PputGB1_3061 NC_010322.1 3417033 3417902 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6; hypothetical protein complement(3417033..3417902) Pseudomonas putida GB-1 5870846 YP_001669290.1 CDS PputGB1_3062 NC_010322.1 3418024 3419406 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_1890 transcriptional regulator, GntR family with aminotransferase domain; transcriptional regulator 3418024..3419406 Pseudomonas putida GB-1 5870847 YP_001669291.1 CDS PputGB1_3063 NC_010322.1 3419432 3420073 R PFAM: protein of unknown function DUF1109; KEGG: pen:PSEEN3271 hypothetical protein; hypothetical protein complement(3419432..3420073) Pseudomonas putida GB-1 5870848 YP_001669292.1 CDS PputGB1_3064 NC_010322.1 3420060 3420599 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(3420060..3420599) Pseudomonas putida GB-1 5870849 YP_001669293.1 CDS PputGB1_3065 NC_010322.1 3420834 3421121 D KEGG: pen:PSEEN3274 hypothetical protein; hypothetical protein 3420834..3421121 Pseudomonas putida GB-1 5870850 YP_001669294.1 CDS PputGB1_3066 NC_010322.1 3421138 3421971 D PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3275 hypothetical protein; hypothetical protein 3421138..3421971 Pseudomonas putida GB-1 5870851 YP_001669295.1 CDS PputGB1_3067 NC_010322.1 3421968 3422723 D KEGG: pen:PSEEN3276 hypothetical protein; hypothetical protein 3421968..3422723 Pseudomonas putida GB-1 5870852 YP_001669296.1 CDS PputGB1_3068 NC_010322.1 3422734 3423201 D PFAM: DoxX family protein; KEGG: pen:PSEEN3277 hypothetical protein; DoxX family protein 3422734..3423201 Pseudomonas putida GB-1 5870853 YP_001669297.1 CDS PputGB1_3069 NC_010322.1 3423216 3424166 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2717 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3423216..3424166) Pseudomonas putida GB-1 5870854 YP_001669298.1 CDS PputGB1_3070 NC_010322.1 3424275 3425072 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_2716 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3424275..3425072 Pseudomonas putida GB-1 5870855 YP_001669299.1 CDS PputGB1_3071 NC_010322.1 3425223 3426230 D TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5645 zinc-binding alcohol dehydrogenase family protein; zinc-binding alcohol dehydrogenase family protein 3425223..3426230 Pseudomonas putida GB-1 5870856 YP_001669300.1 CDS PputGB1_3072 NC_010322.1 3426413 3427165 D KEGG: rme:Rmet_5409 hypothetical protein; hypothetical protein 3426413..3427165 Pseudomonas putida GB-1 5870857 YP_001669301.1 CDS PputGB1_3073 NC_010322.1 3427162 3428508 D KEGG: rme:Rmet_5410 hypothetical protein; hypothetical protein 3427162..3428508 Pseudomonas putida GB-1 5870858 YP_001669302.1 CDS PputGB1_3074 NC_010322.1 3428508 3430598 D PFAM: peptidase M50; KEGG: rme:Rmet_5411 peptidase M50; peptidase M50 3428508..3430598 Pseudomonas putida GB-1 5870859 YP_001669303.1 CDS PputGB1_3075 NC_010322.1 3430693 3441219 D TIGRFAM: conserved repeat domain protein; outer membrane adhesin like proteiin; KEGG: rme:Rmet_5407 hypothetical protein; outer membrane adhesin like protein 3430693..3441219 Pseudomonas putida GB-1 5870860 YP_001669304.1 CDS PputGB1_3076 NC_010322.1 3441257 3442765 D PFAM: outer membrane efflux protein; KEGG: rme:Rmet_5408 outer membrane efflux protein; outer membrane efflux protein 3441257..3442765 Pseudomonas putida GB-1 5870861 YP_001669305.1 CDS PputGB1_3077 NC_010322.1 3442886 3443233 D PFAM: regulatory protein ArsR; KEGG: pfl:PFL_2186 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator 3442886..3443233 Pseudomonas putida GB-1 5870862 YP_001669306.1 CDS PputGB1_3078 NC_010322.1 3443255 3444538 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pen:PSEEN3307 arsenite efflux pump; arsenical pump membrane protein 3443255..3444538 Pseudomonas putida GB-1 5870863 YP_001669307.1 CDS PputGB1_3079 NC_010322.1 3444567 3445037 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN3308 arsenate reductase; protein tyrosine phosphatase 3444567..3445037 Pseudomonas putida GB-1 5870864 YP_001669308.1 CDS PputGB1_3080 NC_010322.1 3445051 3445752 D TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: pfl:PFL_2183 ArsH protein; arsenical resistance protein ArsH 3445051..3445752 Pseudomonas putida GB-1 5870865 YP_001669309.1 CDS PputGB1_3081 NC_010322.1 3445807 3446097 R KEGG: pen:PSEEN2771 hypothetical protein; hypothetical protein complement(3445807..3446097) Pseudomonas putida GB-1 5870866 YP_001669310.1 CDS PputGB1_3082 NC_010322.1 3446266 3446523 R hypothetical protein complement(3446266..3446523) Pseudomonas putida GB-1 5870867 YP_001669311.1 CDS PputGB1_3083 NC_010322.1 3446718 3447902 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pfl:PFL_3535 peptidase, M20/M25/M40 family; amidohydrolase complement(3446718..3447902) Pseudomonas putida GB-1 5870868 YP_001669312.1 CDS PputGB1_3084 NC_010322.1 3447904 3449205 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3534 proline/betaine transporter; major facilitator superfamily transporter complement(3447904..3449205) Pseudomonas putida GB-1 5870869 YP_001669313.1 CDS PputGB1_3085 NC_010322.1 3449579 3450709 D KEGG: bam:Bamb_5897 outer membrane protein (porin)-like protein; hypothetical protein 3449579..3450709 Pseudomonas putida GB-1 5870870 YP_001669314.1 CDS PputGB1_3086 NC_010322.1 3450686 3451624 R PFAM: regulatory protein MarR; regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5417 transcriptional regulator, LysR family; MarR family transcriptional regulator complement(3450686..3451624) Pseudomonas putida GB-1 5870871 YP_001669315.1 CDS PputGB1_3087 NC_010322.1 3451711 3452211 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bte:BTH_I1124 AhpC/TSA family protein; redoxin domain-containing protein complement(3451711..3452211) Pseudomonas putida GB-1 5870872 YP_001669316.1 CDS PputGB1_3088 NC_010322.1 3452315 3452455 R hypothetical protein complement(3452315..3452455) Pseudomonas putida GB-1 5870873 YP_001669317.1 CDS PputGB1_3089 NC_010322.1 3452955 3453938 D PFAM: Domain of unknown function DUF1852; KEGG: pfl:PFL_3510 hypothetical protein; hypothetical protein 3452955..3453938 Pseudomonas putida GB-1 5870874 YP_001669318.1 CDS PputGB1_3090 NC_010322.1 3453966 3455000 D catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3453966..3455000 Pseudomonas putida GB-1 5870875 YP_001669319.1 CDS PputGB1_3091 NC_010322.1 3455026 3455535 D PFAM: flavin reductase domain protein FMN-binding; KEGG: pfl:PFL_3512 flavin reductase domain protein; flavin reductase domain-containing protein 3455026..3455535 Pseudomonas putida GB-1 5870876 YP_001669320.1 CDS PputGB1_3092 NC_010322.1 3455634 3456563 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_2852 transcriptional regulator MetR; LysR family transcriptional regulator 3455634..3456563 Pseudomonas putida GB-1 5870877 YP_001669321.1 CDS PputGB1_3093 NC_010322.1 3456609 3457583 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(3456609..3457583) Pseudomonas putida GB-1 5870878 YP_001669322.1 CDS PputGB1_3094 NC_010322.1 3457618 3458871 R PFAM: glycine hydroxymethyltransferase; KEGG: psp:PSPPH_4750 serine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(3457618..3458871) Pseudomonas putida GB-1 5870879 YP_001669323.1 CDS PputGB1_3095 NC_010322.1 3458904 3461774 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(3458904..3461774) Pseudomonas putida GB-1 5870880 YP_001669324.1 CDS PputGB1_3096 NC_010322.1 3461790 3462167 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(3461790..3462167) Pseudomonas putida GB-1 5870881 YP_001669325.1 CDS PputGB1_3097 NC_010322.1 3462428 3463960 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pfl:PFL_4639 sigma-54 dependent transcriptional regulator TyrR, putative; putative PAS/PAC sensor protein complement(3462428..3463960) Pseudomonas putida GB-1 5870882 YP_001669326.1 CDS PputGB1_3098 NC_010322.1 3464055 3465479 R involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease complement(3464055..3465479) Pseudomonas putida GB-1 5870883 YP_001669327.1 CDS PputGB1_3099 NC_010322.1 3465833 3467521 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(3465833..3467521) Pseudomonas putida GB-1 5870884 YP_001669328.1 CDS PputGB1_3100 NC_010322.1 3467526 3468995 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro05709 hypothetical protein; cytosine/purines uracil thiamine allantoin permease complement(3467526..3468995) Pseudomonas putida GB-1 5870885 YP_001669329.1 CDS PputGB1_3101 NC_010322.1 3468992 3469171 R hypothetical protein complement(3468992..3469171) Pseudomonas putida GB-1 5870886 YP_001669330.1 CDS PputGB1_3102 NC_010322.1 3469268 3470776 R PFAM: Aldehyde Dehydrogenase; KEGG: bch:Bcen2424_5056 aldehyde dehydrogenase (NAD(+)); aldehyde dehydrogenase complement(3469268..3470776) Pseudomonas putida GB-1 5870887 YP_001669331.1 CDS PputGB1_3103 NC_010322.1 3470792 3471763 R TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sil:SPO0678 agmatinase, putative; agmatinase complement(3470792..3471763) Pseudomonas putida GB-1 5870888 YP_001669332.1 CDS PputGB1_3104 NC_010322.1 3472032 3472958 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pau:PA14_46060 transcriptional regulator; LysR family transcriptional regulator 3472032..3472958 Pseudomonas putida GB-1 5870889 YP_001669333.1 CDS PputGB1_3105 NC_010322.1 3473066 3473629 R KEGG: gfo:GFO_2590 hypothetical protein; hypothetical protein complement(3473066..3473629) Pseudomonas putida GB-1 5870890 YP_001669334.1 CDS PputGB1_3106 NC_010322.1 3474181 3475590 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pfl:PFL_2518 domain of unknown function (DUF404) family; hypothetical protein 3474181..3475590 Pseudomonas putida GB-1 5870891 YP_001669335.1 CDS PputGB1_3107 NC_010322.1 3475594 3476544 D PFAM: protein of unknown function DUF403; KEGG: pfl:PFL_2519 hypothetical protein; hypothetical protein 3475594..3476544 Pseudomonas putida GB-1 5870892 YP_001669336.1 CDS PputGB1_3108 NC_010322.1 3476541 3477320 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pfl:PFL_2520 transglutaminase-like superfamily domain protein; transglutaminase domain-containing protein 3476541..3477320 Pseudomonas putida GB-1 5870893 YP_001669337.1 CDS PputGB1_3109 NC_010322.1 3477394 3478116 D KEGG: pae:PA1733 putative proteasome-type protease; putative proteasome-type protease 3477394..3478116 Pseudomonas putida GB-1 5870894 YP_001669338.1 CDS PputGB1_3110 NC_010322.1 3478193 3479329 D PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4999 hypothetical protein; major facilitator superfamily transporter 3478193..3479329 Pseudomonas putida GB-1 5870895 YP_001669339.1 CDS PputGB1_3111 NC_010322.1 3479469 3480812 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: asa:ASA_2939 DsdX permease; gluconate transporter 3479469..3480812 Pseudomonas putida GB-1 5870896 YP_001669340.1 CDS PputGB1_3112 NC_010322.1 3480847 3482184 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 3480847..3482184 Pseudomonas putida GB-1 5870897 YP_001669341.1 CDS PputGB1_3113 NC_010322.1 3482220 3483167 D regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 3482220..3483167 Pseudomonas putida GB-1 5870898 YP_001669342.1 CDS PputGB1_3114 NC_010322.1 3483353 3485449 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psa:PST_3455 ATPase of the AAA+ class; ATPase central domain-containing protein 3483353..3485449 Pseudomonas putida GB-1 5870899 YP_001669343.1 CDS PputGB1_3115 NC_010322.1 3485523 3486554 D KEGG: psa:PST_3457 transcriptional factor MdcH; transcriptional factor MdcH 3485523..3486554 Pseudomonas putida GB-1 5870900 YP_001669344.1 CDS PputGB1_3116 NC_010322.1 3486706 3487356 D KEGG: she:Shewmr4_1721 hypothetical protein; hypothetical protein 3486706..3487356 Pseudomonas putida GB-1 5870901 YP_001669345.1 CDS PputGB1_3117 NC_010322.1 3487537 3490161 D KEGG: afw:Anae109_4010 hypothetical protein; hypothetical protein 3487537..3490161 Pseudomonas putida GB-1 5870902 YP_001669346.1 CDS PputGB1_3118 NC_010322.1 3490164 3493349 D PFAM: UvrD/REP helicase; KEGG: afw:Anae109_4011 UvrD/REP helicase; UvrD/REP helicase 3490164..3493349 Pseudomonas putida GB-1 5870903 YP_001669347.1 CDS PputGB1_3119 NC_010322.1 3493429 3493728 D hypothetical protein 3493429..3493728 Pseudomonas putida GB-1 5870904 YP_001669348.1 CDS PputGB1_3120 NC_010322.1 3493764 3495428 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_2226 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase complement(3493764..3495428) Pseudomonas putida GB-1 5870905 YP_001669349.1 CDS PputGB1_3121 NC_010322.1 3495412 3496575 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pfl:PFL_2225 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(3495412..3496575) Pseudomonas putida GB-1 5870906 YP_001669350.1 CDS PputGB1_3122 NC_010322.1 3496665 3496937 R with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD complement(3496665..3496937) Pseudomonas putida GB-1 5870907 YP_001669351.1 CDS PputGB1_3123 NC_010322.1 3497260 3498780 R PFAM: Aldehyde Dehydrogenase; KEGG: pfl:PFL_2222 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3497260..3498780) Pseudomonas putida GB-1 5870908 YP_001669352.1 CDS PputGB1_3124 NC_010322.1 3498907 3500694 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pfl:PFL_2221 quinoprotein ethanol dehydrogenase; methanol/ethanol family PQQ-dependent dehydrogenase complement(3498907..3500694) Pseudomonas putida GB-1 5870909 YP_001669353.1 CDS PputGB1_3125 NC_010322.1 3501097 3502038 R PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase, putative; beta-lactamase domain-containing protein complement(3501097..3502038) Pseudomonas putida GB-1 5870910 YP_001669354.1 CDS PputGB1_3126 NC_010322.1 3502077 3502838 R KEGG: pfl:PFL_2219 hypothetical protein; hypothetical protein complement(3502077..3502838) Pseudomonas putida GB-1 5870911 YP_001669355.1 CDS PputGB1_3127 NC_010322.1 3502847 3503722 R SMART: extracellular solute-binding protein family 3; KEGG: pfl:PFL_2218 periplasmic binding protein, putative; extracellular solute-binding protein complement(3502847..3503722) Pseudomonas putida GB-1 5870912 YP_001669356.1 CDS PputGB1_3128 NC_010322.1 3503728 3504189 R PFAM: cytochrome c class I; KEGG: pfl:PFL_2217 cytochrome c-550; cytochrome c class I complement(3503728..3504189) Pseudomonas putida GB-1 5870913 YP_001669357.1 CDS PputGB1_3129 NC_010322.1 3504444 3506339 D TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: pfl:PFL_2216 quinoprotein ethanol dehydrogenase; methanol/ethanol family PQQ-dependent dehydrogenase 3504444..3506339 Pseudomonas putida GB-1 5870914 YP_001669358.1 CDS PputGB1_3130 NC_010322.1 3506407 3507066 D PFAM: pentapeptide repeat protein; KEGG: pfl:PFL_2215 pentapeptide repeat family protein; pentapeptide repeat-containing protein 3506407..3507066 Pseudomonas putida GB-1 5870915 YP_001669359.1 CDS PputGB1_3131 NC_010322.1 3507356 3507994 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_2212 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(3507356..3507994) Pseudomonas putida GB-1 5870916 YP_001669360.1 CDS PputGB1_3132 NC_010322.1 3507994 3509268 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pfl:PFL_2211 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3507994..3509268) Pseudomonas putida GB-1 5870917 YP_001669361.1 CDS PputGB1_3133 NC_010322.1 3509419 3510597 D KEGG: pfl:PFL_2209 hypothetical protein; hypothetical protein 3509419..3510597 Pseudomonas putida GB-1 5870918 YP_001669362.1 CDS PputGB1_3134 NC_010322.1 3510628 3511617 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pfl:PFL_2208 YVTN beta-propeller repeat family protein; hypothetical protein 3510628..3511617 Pseudomonas putida GB-1 5870919 YP_001669363.1 CDS PputGB1_3135 NC_010322.1 3511614 3512354 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2207 ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 3511614..3512354 Pseudomonas putida GB-1 5870920 YP_001669364.1 CDS PputGB1_3136 NC_010322.1 3512351 3513142 D PFAM: ABC-2 type transporter; KEGG: pfl:PFL_2206 ABC efflux transporter, permease protein; ABC transporter 3512351..3513142 Pseudomonas putida GB-1 5870921 YP_001669365.1 CDS PputGB1_3137 NC_010322.1 3513280 3513828 D KEGG: pfl:PFL_2205 hypothetical protein; hypothetical protein 3513280..3513828 Pseudomonas putida GB-1 5870922 YP_001669366.1 CDS PputGB1_3138 NC_010322.1 3513887 3514552 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pfl:PFL_2204 DNA-binding response regulator AgmR; two component LuxR family transcriptional regulator 3513887..3514552 Pseudomonas putida GB-1 5870923 YP_001669367.1 CDS PputGB1_3139 NC_010322.1 3514537 3516444 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pfl:PFL_2203 sensory box histidine kinase/response regulator; PAS/PAC sensor hybrid histidine kinase complement(3514537..3516444) Pseudomonas putida GB-1 5870924 YP_001669368.1 CDS PputGB1_3140 NC_010322.1 3516413 3517576 R PFAM: domain of unknown function DUF1745; KEGG: pfl:PFL_2202 hypothetical protein; hypothetical protein complement(3516413..3517576) Pseudomonas putida GB-1 5870925 YP_001669369.1 CDS PputGB1_3141 NC_010322.1 3517723 3518910 R KEGG: pfl:PFL_2201 hypothetical protein; hypothetical protein complement(3517723..3518910) Pseudomonas putida GB-1 5870926 YP_001669370.1 CDS PputGB1_3142 NC_010322.1 3519152 3519751 R KEGG: hch:HCH_04391 hypothetical protein; hypothetical protein complement(3519152..3519751) Pseudomonas putida GB-1 5870927 YP_001669371.1 CDS PputGB1_3143 NC_010322.1 3519751 3520449 R hypothetical protein complement(3519751..3520449) Pseudomonas putida GB-1 5870928 YP_001669372.1 CDS PputGB1_3144 NC_010322.1 3520544 3521332 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(3520544..3521332) Pseudomonas putida GB-1 5870929 YP_001669373.1 CDS PputGB1_3145 NC_010322.1 3521383 3522276 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2479 phosphate transport system permease protein 2; phosphate ABC transporter permease complement(3521383..3522276) Pseudomonas putida GB-1 5870930 YP_001669374.1 CDS PputGB1_3146 NC_010322.1 3522273 3523241 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_2478 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease complement(3522273..3523241) Pseudomonas putida GB-1 5870931 YP_001669375.1 CDS PputGB1_3147 NC_010322.1 3523312 3524343 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ana:all4575 phosphate transport system substrate-binding protein; phosphate ABC transporter substrate-binding protein complement(3523312..3524343) Pseudomonas putida GB-1 5870932 YP_001669376.1 CDS PputGB1_3148 NC_010322.1 3524525 3525442 D PFAM: protein of unknown function DUF344; KEGG: pap:PSPA7_2825 hypothetical protein; hypothetical protein 3524525..3525442 Pseudomonas putida GB-1 5870933 YP_001669377.1 CDS PputGB1_3149 NC_010322.1 3525516 3525749 R hypothetical protein complement(3525516..3525749) Pseudomonas putida GB-1 5870934 YP_001669378.1 CDS PputGB1_3150 NC_010322.1 3525834 3526271 R PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: gga:418178 microsomal glutathione S-transferase 1; eicosanoid and glutathione metabolism membrane protein complement(3525834..3526271) Pseudomonas putida GB-1 5870935 YP_001669379.1 CDS PputGB1_3151 NC_010322.1 3526268 3526582 R KEGG: pfl:PFL_2443 hypothetical protein; hypothetical protein complement(3526268..3526582) Pseudomonas putida GB-1 5870936 YP_001669380.1 CDS PputGB1_3152 NC_010322.1 3526688 3527503 D PFAM: helix-turn-helix domain protein; KEGG: pfl:PFL_2446 DNA-binding protein; XRE family transcriptional regulator 3526688..3527503 Pseudomonas putida GB-1 5870937 YP_001669381.1 CDS PputGB1_3153 NC_010322.1 3527493 3528278 R PFAM: Hydratase/decarboxylase; KEGG: bja:blr0622 putative hydratase; hydratase/decarboxylase complement(3527493..3528278) Pseudomonas putida GB-1 5870938 YP_001669382.1 CDS PputGB1_3154 NC_010322.1 3528396 3529739 R PFAM: major facilitator superfamily MFS_1; KEGG: ecv:APECO1_2505 hypothetical protein; major facilitator superfamily transporter complement(3528396..3529739) Pseudomonas putida GB-1 5870939 YP_001669383.1 CDS PputGB1_3155 NC_010322.1 3529784 3530926 R PFAM: iron-containing alcohol dehydrogenase; KEGG: bbr:BB1480 NAD-dependent 4-hydroxybutyrate dehydrogenase; iron-containing alcohol dehydrogenase complement(3529784..3530926) Pseudomonas putida GB-1 5870940 YP_001669384.1 CDS PputGB1_3156 NC_010322.1 3531069 3532010 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1479 putative regulatory protein; LysR family transcriptional regulator 3531069..3532010 Pseudomonas putida GB-1 5870941 YP_001669385.1 CDS PputGB1_3157 NC_010322.1 3532128 3533351 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pfl:PFL_4167 monooxygenase, DszC family; type 2 acyl-CoA dehydrogenase 3532128..3533351 Pseudomonas putida GB-1 5870942 YP_001669386.1 CDS PputGB1_3158 NC_010322.1 3533362 3534027 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_4166 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3533362..3534027 Pseudomonas putida GB-1 5870943 YP_001669387.1 CDS PputGB1_3159 NC_010322.1 3534054 3534824 D PFAM: NLPA lipoprotein; KEGG: pfl:PFL_4165 lipoprotein, NlpA family; NLPA lipoprotein 3534054..3534824 Pseudomonas putida GB-1 5870944 YP_001669388.1 CDS PputGB1_3160 NC_010322.1 3534866 3535879 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_34270 putative ATP-binding component of ABC transporter; ABC transporter-like protein 3534866..3535879 Pseudomonas putida GB-1 5870945 YP_001669389.1 CDS PputGB1_3161 NC_010322.1 3535880 3538570 R TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Rhodanese domain protein; KEGG: pst:PSPTO_2632 rhodanese domain protein/cystathionine beta-lyase; cystathionine beta-lyase complement(3535880..3538570) Pseudomonas putida GB-1 5870946 YP_001669390.1 CDS PputGB1_3162 NC_010322.1 3538619 3539209 R KEGG: pst:PSPTO_2631 hypothetical protein; hypothetical protein complement(3538619..3539209) Pseudomonas putida GB-1 5870947 YP_001669391.1 CDS PputGB1_3163 NC_010322.1 3539239 3540057 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_2630 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3539239..3540057) Pseudomonas putida GB-1 5870948 YP_001669392.1 CDS PputGB1_3164 NC_010322.1 3540047 3540727 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2629 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(3540047..3540727) Pseudomonas putida GB-1 5870949 YP_001669393.1 CDS PputGB1_3165 NC_010322.1 3540717 3541451 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2628 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(3540717..3541451) Pseudomonas putida GB-1 5870950 YP_001669394.1 CDS PputGB1_3166 NC_010322.1 3541451 3542290 R SMART: extracellular solute-binding protein family 3; KEGG: pst:PSPTO_2627 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(3541451..3542290) Pseudomonas putida GB-1 5870951 YP_001669395.1 CDS PputGB1_3167 NC_010322.1 3542570 3543421 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_2626 transcriptional regulator, LysR family; LysR family transcriptional regulator 3542570..3543421 Pseudomonas putida GB-1 5870952 YP_001669396.1 CDS PputGB1_3168 NC_010322.1 3543440 3543904 R PFAM: regulatory protein AsnC/Lrp family; KEGG: bte:BTH_I0319 AsnC family regulatory protein; AsnC family transcriptional regulator complement(3543440..3543904) Pseudomonas putida GB-1 5870953 YP_001669397.1 CDS PputGB1_3169 NC_010322.1 3544024 3544743 D PFAM: AzlC family protein; KEGG: bte:BTH_I0320 brancheD-chain amino acid transport protein AzlC; AzlC family protein 3544024..3544743 Pseudomonas putida GB-1 5870954 YP_001669398.1 CDS PputGB1_3170 NC_010322.1 3544740 3545042 D PFAM: branched-chain amino acid transport; KEGG: bpd:BURPS668_0363 AzlD family protein; branched-chain amino acid transport 3544740..3545042 Pseudomonas putida GB-1 5870955 YP_001669399.1 CDS PputGB1_3171 NC_010322.1 3545202 3546077 D PFAM: UspA domain protein; KEGG: eba:ebA222 universal stress protein; UspA domain-containing protein 3545202..3546077 Pseudomonas putida GB-1 5870956 YP_001669400.1 CDS PputGB1_3172 NC_010322.1 3546163 3546534 R hypothetical protein complement(3546163..3546534) Pseudomonas putida GB-1 5870957 YP_001669401.1 CDS PputGB1_3173 NC_010322.1 3546531 3546770 R KEGG: kpn:KPN_04766 hypothetical protein; hypothetical protein complement(3546531..3546770) Pseudomonas putida GB-1 5870958 YP_001669402.1 CDS PputGB1_3174 NC_010322.1 3546763 3547674 R PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: ter:Tery_3032 cupin 4; cupin 4 family protein complement(3546763..3547674) Pseudomonas putida GB-1 5870959 YP_001669403.1 CDS PputGB1_3175 NC_010322.1 3547684 3549339 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo0453 probable composite transport ATP-binding permase protein; ABC transporter-like protein complement(3547684..3549339) Pseudomonas putida GB-1 5870960 YP_001669404.1 CDS PputGB1_3176 NC_010322.1 3549391 3550098 R KEGG: lpc:LPC_2246 hypothetical protein; hypothetical protein complement(3549391..3550098) Pseudomonas putida GB-1 5870961 YP_001669405.1 CDS PputGB1_3177 NC_010322.1 3550330 3550923 R KEGG: pst:PSPTO_2852 hypothetical protein; hypothetical protein complement(3550330..3550923) Pseudomonas putida GB-1 5870962 YP_001669406.1 CDS PputGB1_3178 NC_010322.1 3551207 3551605 R KEGG: pst:PSPTO_2843 hypothetical protein; hypothetical protein complement(3551207..3551605) Pseudomonas putida GB-1 5870963 YP_001669407.1 CDS PputGB1_3179 NC_010322.1 3551737 3552423 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pfo:Pfl_3562 transcriptional regulator, TetR family; TetR family transcriptional regulator 3551737..3552423 Pseudomonas putida GB-1 5870964 YP_001669408.1 CDS PputGB1_3180 NC_010322.1 3552725 3553201 R PFAM: regulatory protein AsnC/Lrp family; KEGG: zmo:ZMO0023 transcriptional regulator; AsnC family transcriptional regulator complement(3552725..3553201) Pseudomonas putida GB-1 5870965 YP_001669409.1 CDS PputGB1_3181 NC_010322.1 3553309 3554154 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sal:Sala_1861 protein of unknown function DUF6, transmembrane; hypothetical protein 3553309..3554154 Pseudomonas putida GB-1 5870966 YP_001669410.1 CDS PputGB1_3182 NC_010322.1 3554296 3555537 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2622 transporter, MFS family; major facilitator superfamily transporter 3554296..3555537 Pseudomonas putida GB-1 5870967 YP_001669411.1 CDS PputGB1_3183 NC_010322.1 3555553 3558267 R KEGG: pen:PSEEN5381 P-type ATPase, Mg2+ ATPase transporter; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase complement(3555553..3558267) Pseudomonas putida GB-1 5870968 YP_001669412.1 CDS PputGB1_3184 NC_010322.1 3559012 3560637 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: psa:PST_1890 probable chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(3559012..3560637) Pseudomonas putida GB-1 5870969 YP_001669413.1 CDS PputGB1_3185 NC_010322.1 3560778 3561668 R PFAM: alpha/beta hydrolase fold; KEGG: ccr:CC_2230 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold family protein complement(3560778..3561668) Pseudomonas putida GB-1 5870970 YP_001669414.1 CDS PputGB1_3186 NC_010322.1 3561896 3563140 D KEGG: psp:PSPPH_1225 hypothetical protein; hypothetical protein 3561896..3563140 Pseudomonas putida GB-1 5870971 YP_001669415.1 CDS PputGB1_3187 NC_010322.1 3563106 3564569 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: bxe:Bxe_A4302 transcriptional regulator, GntR family; transcriptional regulator complement(3563106..3564569) Pseudomonas putida GB-1 5870972 YP_001669416.1 CDS PputGB1_3188 NC_010322.1 3564651 3566417 D PFAM: peptidase M24; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vei:Veis_3512 hypothetical protein; ferredoxin 3564651..3566417 Pseudomonas putida GB-1 5870973 YP_001669417.1 CDS PputGB1_3189 NC_010322.1 3566616 3568310 D PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: noc:Noc_0564 hypothetical protein; hypothetical protein 3566616..3568310 Pseudomonas putida GB-1 5870974 YP_001669418.1 CDS PputGB1_3190 NC_010322.1 3568342 3568878 D hypothetical protein 3568342..3568878 Pseudomonas putida GB-1 5870975 YP_001669419.1 CDS PputGB1_3191 NC_010322.1 3568955 3569524 R PFAM: dihydrodipicolinate synthetase; KEGG: spe:Spro_2222 dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(3568955..3569524) Pseudomonas putida GB-1 5870976 YP_001669420.1 CDS PputGB1_3192 NC_010322.1 3569581 3571494 R KEGG: mxa:MXAN_4340 hypothetical protein; hypothetical protein complement(3569581..3571494) Pseudomonas putida GB-1 5870977 YP_001669421.1 CDS PputGB1_3193 NC_010322.1 3571651 3572520 R TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: pfl:PFL_3321 dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(3571651..3572520) Pseudomonas putida GB-1 5870978 YP_001669422.1 CDS PputGB1_3194 NC_010322.1 3572830 3576390 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC complement(3572830..3576390) Pseudomonas putida GB-1 5870979 YP_001669423.1 CDS PputGB1_3195 NC_010322.1 3576378 3577493 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase complement(3576378..3577493) Pseudomonas putida GB-1 5870980 YP_001669424.1 CDS PputGB1_3196 NC_010322.1 3577493 3579778 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(3577493..3579778) Pseudomonas putida GB-1 5870981 YP_001669425.1 CDS bcsA NC_010322.1 3579778 3582387 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit complement(3579778..3582387) Pseudomonas putida GB-1 5870982 YP_001669426.1 CDS PputGB1_3198 NC_010322.1 3582384 3583091 R KEGG: psa:PST_0282 cellulose synthase, putative; cellulose synthase complement(3582384..3583091) Pseudomonas putida GB-1 5870983 YP_001669427.1 CDS PputGB1_3199 NC_010322.1 3583088 3583306 R hypothetical protein complement(3583088..3583306) Pseudomonas putida GB-1 5870984 YP_001669428.1 CDS PputGB1_3200 NC_010322.1 3583303 3584916 R KEGG: psa:PST_0283 hypothetical protein; hypothetical protein complement(3583303..3584916) Pseudomonas putida GB-1 5870985 YP_001669429.1 CDS PputGB1_3201 NC_010322.1 3584909 3585094 R hypothetical protein complement(3584909..3585094) Pseudomonas putida GB-1 5870986 YP_001669430.1 CDS PputGB1_3202 NC_010322.1 3585091 3586581 R KEGG: psa:PST_0284 putative protease; putative protease complement(3585091..3586581) Pseudomonas putida GB-1 5870987 YP_001669431.1 CDS PputGB1_3203 NC_010322.1 3586918 3588771 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2245 ABC transporter, transmembrane region; ABC transporter-like protein 3586918..3588771 Pseudomonas putida GB-1 5870988 YP_001669432.1 CDS PputGB1_3204 NC_010322.1 3588840 3589667 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: psp:PSPPH_2832 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(3588840..3589667) Pseudomonas putida GB-1 5870989 YP_001669433.1 CDS PputGB1_3205 NC_010322.1 3589917 3590936 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pst:PSPTO_2524 ABC transporter, ATP-binding protein; ABC transporter-like protein 3589917..3590936 Pseudomonas putida GB-1 5870990 YP_001669434.1 CDS PputGB1_3206 NC_010322.1 3590933 3591802 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2523 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3590933..3591802 Pseudomonas putida GB-1 5870991 YP_001669435.1 CDS PputGB1_3207 NC_010322.1 3591807 3592601 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_2522 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3591807..3592601 Pseudomonas putida GB-1 5870992 YP_001669436.1 CDS PputGB1_3208 NC_010322.1 3592616 3592906 D KEGG: psp:PSPPH_2836 Dye-L-proDH alpha; hypothetical protein 3592616..3592906 Pseudomonas putida GB-1 5870993 YP_001669437.1 CDS PputGB1_3209 NC_010322.1 3592903 3594261 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: psb:Psyr_2331 FAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region; BFD/(2Fe-2S)-binding domain-containing protein 3592903..3594261 Pseudomonas putida GB-1 5870994 YP_001669438.1 CDS PputGB1_3210 NC_010322.1 3594258 3595394 D PFAM: FAD dependent oxidoreductase; KEGG: pst:PSPTO_2519 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 3594258..3595394 Pseudomonas putida GB-1 5870995 YP_001669439.1 CDS PputGB1_3211 NC_010322.1 3595391 3596434 D PFAM: extracellular solute-binding protein family 1; KEGG: psp:PSPPH_2839 bacterial extracellular solute-binding domain protein; extracellular solute-binding protein 3595391..3596434 Pseudomonas putida GB-1 5870996 YP_001669440.1 CDS PputGB1_3212 NC_010322.1 3596629 3597873 D PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 3596629..3597873 Pseudomonas putida GB-1 5870997 YP_001669441.1 CDS PputGB1_3213 NC_010322.1 3597930 3598670 R PFAM: class II aldolase/adducin family protein; KEGG: bpt:Bpet3845 Put. aldolase, class II; hypothetical protein complement(3597930..3598670) Pseudomonas putida GB-1 5870998 YP_001669442.1 CDS PputGB1_3214 NC_010322.1 3598684 3600006 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator superfamily transporter complement(3598684..3600006) Pseudomonas putida GB-1 5870999 YP_001669443.1 CDS PputGB1_3215 NC_010322.1 3600287 3600961 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: oan:Oant_4590 transcriptional regulator, GntR family; GntR family transcriptional regulator 3600287..3600961 Pseudomonas putida GB-1 5871000 YP_001669444.1 CDS PputGB1_3216 NC_010322.1 3601013 3601783 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpn:KPN_00388 bacterial regulatory proteins, IclR; IclR family transcriptional regulator complement(3601013..3601783) Pseudomonas putida GB-1 5871001 YP_001669445.1 CDS PputGB1_3217 NC_010322.1 3601939 3602748 D PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bxe:Bxe_C0879 shikimate 5-dehydrogenase; shikimate dehydrogenase 3601939..3602748 Pseudomonas putida GB-1 5871002 YP_001669446.1 CDS PputGB1_3218 NC_010322.1 3602753 3604486 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00386 putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3602753..3604486 Pseudomonas putida GB-1 5871003 YP_001669447.1 CDS PputGB1_3219 NC_010322.1 3604471 3604791 D PFAM: NIPSNAP family containing protein; KEGG: kpn:KPN_00385 NIPSNAP; NIPSNAP family protein 3604471..3604791 Pseudomonas putida GB-1 5871004 YP_001669448.1 CDS PputGB1_3220 NC_010322.1 3604833 3606515 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00384 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3604833..3606515 Pseudomonas putida GB-1 5871005 YP_001669449.1 CDS PputGB1_3221 NC_010322.1 3606556 3610140 R TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein; type VI secretion protein IcmF complement(3606556..3610140) Pseudomonas putida GB-1 5871006 YP_001669450.1 CDS PputGB1_3222 NC_010322.1 3610137 3611600 R TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: aeh:Mlg_0056 ImpA domain protein; type VI secretion-associated protein complement(3610137..3611600) Pseudomonas putida GB-1 5871007 YP_001669451.1 CDS PputGB1_3223 NC_010322.1 3611588 3612325 R KEGG: maq:Maqu_3722 hypothetical protein; hypothetical protein complement(3611588..3612325) Pseudomonas putida GB-1 5871008 YP_001669452.1 CDS PputGB1_3224 NC_010322.1 3612561 3613064 D TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: plu:plu0372 hypothetical protein; type VI secretion protein 3612561..3613064 Pseudomonas putida GB-1 5871009 YP_001669453.1 CDS PputGB1_3225 NC_010322.1 3613082 3614572 D TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: maq:Maqu_3732 protein of unknown function DUF877; EvpB family type VI secretion protein 3613082..3614572 Pseudomonas putida GB-1 5871010 YP_001669454.1 CDS PputGB1_3226 NC_010322.1 3614569 3614979 D TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: maq:Maqu_3731 protein of unknown function DUF1316; type VI secretion system lysozyme-like protein 3614569..3614979 Pseudomonas putida GB-1 5871011 YP_001669455.1 CDS PputGB1_3227 NC_010322.1 3614983 3616749 D TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: vco:VC0395_0028 hypothetical protein; type VI secretion protein 3614983..3616749 Pseudomonas putida GB-1 5871012 YP_001669456.1 CDS PputGB1_3228 NC_010322.1 3616713 3617729 D TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: maq:Maqu_3729 protein of unknown function DUF1305; type VI secretion protein 3616713..3617729 Pseudomonas putida GB-1 5871013 YP_001669457.1 CDS PputGB1_3229 NC_010322.1 3617726 3618295 D PFAM: Forkhead-associated protein; KEGG: vco:VC0395_0026 hypothetical protein; FHA domain-containing protein 3617726..3618295 Pseudomonas putida GB-1 5871014 YP_001669458.1 CDS PputGB1_3230 NC_010322.1 3618292 3619089 D KEGG: aeh:Mlg_0051 hypothetical protein; hypothetical protein 3618292..3619089 Pseudomonas putida GB-1 5871015 YP_001669459.1 CDS PputGB1_3231 NC_010322.1 3619145 3620482 D TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: eca:ECA3438 hypothetical protein; type VI secretion protein 3619145..3620482 Pseudomonas putida GB-1 5871016 YP_001669460.1 CDS PputGB1_3232 NC_010322.1 3620484 3621353 D KEGG: vco:VC0395_0022 hypothetical protein; hypothetical protein 3620484..3621353 Pseudomonas putida GB-1 5871017 YP_001669461.1 CDS PputGB1_3233 NC_010322.1 3621473 3621988 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: maq:Maqu_0180 protein of unknown function DUF796; Hcp1 family type VI secretion system effector 3621473..3621988 Pseudomonas putida GB-1 5871018 YP_001669462.1 CDS PputGB1_3234 NC_010322.1 3622062 3624230 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: pau:PA14_44900 hypothetical protein; ImpA family type VI secretion-associated protein 3622062..3624230 Pseudomonas putida GB-1 5871019 YP_001669463.1 CDS PputGB1_3235 NC_010322.1 3624227 3625159 D hypothetical protein 3624227..3625159 Pseudomonas putida GB-1 5871020 YP_001669464.1 CDS PputGB1_3236 NC_010322.1 3625152 3628142 D hypothetical protein 3625152..3628142 Pseudomonas putida GB-1 5871021 YP_001669465.1 CDS PputGB1_3237 NC_010322.1 3628145 3629035 D hypothetical protein 3628145..3629035 Pseudomonas putida GB-1 5871022 YP_001669466.1 CDS PputGB1_3238 NC_010322.1 3629032 3629289 D PFAM: PAAR repeat-containing protein; KEGG: bxe:Bxe_A3019 hypothetical protein; PAAR repeat-containing protein 3629032..3629289 Pseudomonas putida GB-1 5871023 YP_001669467.1 CDS PputGB1_3239 NC_010322.1 3629597 3630922 D PFAM: major facilitator superfamily MFS_1; KEGG: psp:PSPPH_2104 transporter, putative; major facilitator superfamily transporter 3629597..3630922 Pseudomonas putida GB-1 5871024 YP_001669468.1 CDS PputGB1_3240 NC_010322.1 3631133 3631948 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase domain-containing protein complement(3631133..3631948) Pseudomonas putida GB-1 5871025 YP_001669469.1 CDS PputGB1_3241 NC_010322.1 3631979 3633031 R PFAM: oxidoreductase domain protein; CoA-binding domain protein; Oxidoreductase domain; KEGG: pfl:PFL_5392 oxidoreductase, putative; oxidoreductase domain-containing protein complement(3631979..3633031) Pseudomonas putida GB-1 5871026 YP_001669470.1 CDS PputGB1_3242 NC_010322.1 3633171 3633947 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pfl:PFL_5393 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(3633171..3633947) Pseudomonas putida GB-1 5871027 YP_001669471.1 CDS PputGB1_3243 NC_010322.1 3634142 3635854 D proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 3634142..3635854 Pseudomonas putida GB-1 5871028 YP_001669472.1 CDS PputGB1_3244 NC_010322.1 3636019 3637488 D PFAM: Aldehyde Dehydrogenase; KEGG: bpt:Bpet1388 benzaldehyde dehydrogenase II; aldehyde dehydrogenase 3636019..3637488 Pseudomonas putida GB-1 5871029 YP_001669473.1 CDS PputGB1_3245 NC_010322.1 3637507 3638631 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bch:Bcen2424_6517 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3637507..3638631 Pseudomonas putida GB-1 5871030 YP_001669474.1 CDS PputGB1_3246 NC_010322.1 3638692 3639582 D KEGG: xau:Xaut_1344 conserved hypothetical protein; putative signal peptide; putative signal peptide 3638692..3639582 Pseudomonas putida GB-1 5871031 YP_001669475.1 CDS PputGB1_3247 NC_010322.1 3639666 3641456 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_2976 possible transcriptional regulator, fis family; Fis family GAF modulated sigma54 specific transcriptional regulator 3639666..3641456 Pseudomonas putida GB-1 5871032 YP_001669476.1 CDS PputGB1_3248 NC_010322.1 3641460 3644345 R PFAM: histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: maq:Maqu_2105 putative metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(3641460..3644345) Pseudomonas putida GB-1 5871033 YP_001669477.1 CDS PputGB1_3249 NC_010322.1 3644549 3646042 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN2886 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3644549..3646042) Pseudomonas putida GB-1 5871034 YP_001669478.1 CDS PputGB1_3250 NC_010322.1 3646149 3647531 R PFAM: aminotransferase class-III; KEGG: pen:PSEEN2885 aminotransferase, class III; putative aminotransferase complement(3646149..3647531) Pseudomonas putida GB-1 5871035 YP_001669479.1 CDS PputGB1_3251 NC_010322.1 3647574 3648416 R PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2887 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(3647574..3648416) Pseudomonas putida GB-1 5871036 YP_001669480.1 CDS PputGB1_3252 NC_010322.1 3648698 3650092 D PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_0446 putrescine importer; amino acid permease-associated protein 3648698..3650092 Pseudomonas putida GB-1 5871037 YP_001669481.1 CDS PputGB1_3253 NC_010322.1 3650211 3651791 D PFAM: Aldehyde Dehydrogenase; KEGG: pmy:Pmen_0227 aldehyde dehydrogenase; aldehyde dehydrogenase 3650211..3651791 Pseudomonas putida GB-1 5871038 YP_001669482.1 CDS PputGB1_3254 NC_010322.1 3651823 3652689 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_2407 transcriptional regulator, MarR family; LysR family transcriptional regulator complement(3651823..3652689) Pseudomonas putida GB-1 5871039 YP_001669483.1 CDS PputGB1_3255 NC_010322.1 3652802 3653671 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_2408 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 3652802..3653671 Pseudomonas putida GB-1 5871040 YP_001669484.1 CDS PputGB1_3256 NC_010322.1 3653668 3654468 D KEGG: dac:Daci_2409 phosphonate ABC transporter, ATPase subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase 3653668..3654468 Pseudomonas putida GB-1 5871041 YP_001669485.1 CDS PputGB1_3257 NC_010322.1 3654465 3655283 D TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: maq:Maqu_3991 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter inner membrane subunit 3654465..3655283 Pseudomonas putida GB-1 5871042 YP_001669486.1 CDS PputGB1_3258 NC_010322.1 3655369 3656574 D TIGRFAM: phosphonate metabolism-associated iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; KEGG: vei:Veis_2143 iron-containing alcohol dehydrogenase; phosphonate metabolism-associated iron-containing alcohol dehydrogenase 3655369..3656574 Pseudomonas putida GB-1 5871043 YP_001669487.1 CDS PputGB1_3259 NC_010322.1 3656663 3657958 D PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_2142 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3656663..3657958 Pseudomonas putida GB-1 5871044 YP_001669488.1 CDS PputGB1_3260 NC_010322.1 3658001 3658867 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_2144 transcriptional regulator, LysR family; LysR family transcriptional regulator 3658001..3658867 Pseudomonas putida GB-1 5871045 YP_001669489.1 CDS PputGB1_3261 NC_010322.1 3658949 3659776 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3658949..3659776 Pseudomonas putida GB-1 5871046 YP_001669490.1 CDS PputGB1_3262 NC_010322.1 3659982 3661355 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3659982..3661355 Pseudomonas putida GB-1 5871047 YP_001669491.1 CDS PputGB1_3263 NC_010322.1 3661478 3662983 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pmy:Pmen_0163 uracil-xanthine permease; xanthine permease 3661478..3662983 Pseudomonas putida GB-1 5871048 YP_001669492.1 CDS PputGB1_3264 NC_010322.1 3663046 3663777 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_4325 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3663046..3663777) Pseudomonas putida GB-1 5871049 YP_001669493.1 CDS PputGB1_3265 NC_010322.1 3663900 3664673 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1302 transcriptional regulator, LysR family; LysR family transcriptional regulator 3663900..3664673 Pseudomonas putida GB-1 5871050 YP_001669494.1 CDS PputGB1_3266 NC_010322.1 3664691 3665182 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB1082 putative acetyltransferase; N-acetyltransferase GCN5 complement(3664691..3665182) Pseudomonas putida GB-1 5871051 YP_001669495.1 CDS PputGB1_3267 NC_010322.1 3665445 3666515 D KEGG: kpn:KPN_02108 taurine transport protein (ABC superfamily, peri_bind); taurine ABC transporter substrate-binding protein 3665445..3666515 Pseudomonas putida GB-1 5871052 YP_001669496.1 CDS PputGB1_3268 NC_010322.1 3666496 3667491 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpn:KPN_02107 ABC-type transport system, permease component; binding-protein-dependent transport system inner membrane protein 3666496..3667491 Pseudomonas putida GB-1 5871053 YP_001669497.1 CDS PputGB1_3269 NC_010322.1 3667485 3668276 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2221 ABC transporter-related protein; ABC transporter-like protein 3667485..3668276 Pseudomonas putida GB-1 5871054 YP_001669498.1 CDS PputGB1_3270 NC_010322.1 3668351 3668944 D PFAM: Haem oxygenase; KEGG: mmw:Mmwyl1_0316 haem oxygenase; heme oxygenase 3668351..3668944 Pseudomonas putida GB-1 5871055 YP_001669499.1 CDS PputGB1_3271 NC_010322.1 3668976 3669983 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: bbr:BB1239 cytochrome oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(3668976..3669983) Pseudomonas putida GB-1 5871056 YP_001669500.1 CDS PputGB1_3272 NC_010322.1 3669998 3671419 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I complement(3669998..3671419) Pseudomonas putida GB-1 5871057 YP_001669501.1 CDS PputGB1_3273 NC_010322.1 3671422 3671898 R KEGG: bam:Bamb_2523 uncharacterised conserved protein UCP030820; hypothetical protein complement(3671422..3671898) Pseudomonas putida GB-1 5871058 YP_001669502.1 CDS PputGB1_3274 NC_010322.1 3671888 3673897 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: gdi:GDI3239 putative sulfite reductase; sulfite reductase (ferredoxin) complement(3671888..3673897) Pseudomonas putida GB-1 5871059 YP_001669503.1 CDS PputGB1_3275 NC_010322.1 3674066 3675472 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rme:Rmet_4954 transcriptional regulator, GntR family; transcriptional regulator 3674066..3675472 Pseudomonas putida GB-1 5871060 YP_001669504.1 CDS PputGB1_3276 NC_010322.1 3675634 3676008 D KEGG: pen:PSEEN3302 hypothetical protein; hypothetical protein 3675634..3676008 Pseudomonas putida GB-1 5871061 YP_001669505.1 CDS PputGB1_3277 NC_010322.1 3676072 3676227 R KEGG: psb:Psyr_1178 hypothetical protein; hypothetical protein complement(3676072..3676227) Pseudomonas putida GB-1 5871062 YP_001669506.1 CDS PputGB1_3278 NC_010322.1 3676224 3677429 R PFAM: aminotransferase class I and II; KEGG: pfo:Pfl_1713 aminotransferase, class I and II; GntR family transcriptional regulator complement(3676224..3677429) Pseudomonas putida GB-1 5871063 YP_001669507.1 CDS PputGB1_3279 NC_010322.1 3677512 3677958 D PFAM: regulatory protein MarR; KEGG: pfo:Pfl_1712 transcriptional regulator, MarR family; MarR family transcriptional regulator 3677512..3677958 Pseudomonas putida GB-1 5871064 YP_001669508.1 CDS PputGB1_3280 NC_010322.1 3678013 3680421 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor complement(3678013..3680421) Pseudomonas putida GB-1 5871065 YP_001669509.1 CDS PputGB1_3281 NC_010322.1 3680525 3681448 R PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(3680525..3681448) Pseudomonas putida GB-1 5871066 YP_001669510.1 CDS PputGB1_3282 NC_010322.1 3681445 3681960 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3681445..3681960) Pseudomonas putida GB-1 5871067 YP_001669511.1 CDS PputGB1_3283 NC_010322.1 3682153 3683931 D PFAM: sulfatase; KEGG: pen:PSEEN4076 transmembrane sulphatase; hypothetical protein 3682153..3683931 Pseudomonas putida GB-1 5871068 YP_001669512.1 CDS PputGB1_3284 NC_010322.1 3684100 3684768 D PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: bbr:BB2384 putative TetR-family transcriptional regulator; TetR family transcriptional regulator 3684100..3684768 Pseudomonas putida GB-1 5871069 YP_001669513.1 CDS PputGB1_3285 NC_010322.1 3684779 3686284 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2480 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 3684779..3686284 Pseudomonas putida GB-1 5871070 YP_001669514.1 CDS PputGB1_3286 NC_010322.1 3686167 3687459 R PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1818 putative transporter; major facilitator superfamily transporter complement(3686167..3687459) Pseudomonas putida GB-1 5871071 YP_001669515.1 CDS PputGB1_3287 NC_010322.1 3687590 3688126 R PFAM: protein of unknown function DUF330; KEGG: pfo:Pfl_2832 protein of unknown function DUF330; hypothetical protein complement(3687590..3688126) Pseudomonas putida GB-1 5871072 YP_001669516.1 CDS PputGB1_3288 NC_010322.1 3688138 3689778 R PFAM: Mammalian cell entry related domain protein; KEGG: pfo:Pfl_2831 hypothetical protein; hypothetical protein complement(3688138..3689778) Pseudomonas putida GB-1 5871073 YP_001669517.1 CDS PputGB1_3289 NC_010322.1 3689762 3690406 R PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2440 paraquat-inducible protein A; paraquat-inducible protein A complement(3689762..3690406) Pseudomonas putida GB-1 5871074 YP_001669518.1 CDS PputGB1_3290 NC_010322.1 3690403 3690999 R PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2441 paraquat-inducible protein A; paraquat-inducible protein A complement(3690403..3690999) Pseudomonas putida GB-1 5871075 YP_001669519.1 CDS PputGB1_3291 NC_010322.1 3691132 3692478 R KEGG: sbm:Shew185_1554 hypothetical protein; hypothetical protein complement(3691132..3692478) Pseudomonas putida GB-1 5871076 YP_001669520.1 CDS PputGB1_3292 NC_010322.1 3692907 3693380 D KEGG: pfo:Pfl_2136 hypothetical protein; hypothetical protein 3692907..3693380 Pseudomonas putida GB-1 5871077 YP_001669521.1 CDS PputGB1_3293 NC_010322.1 3693429 3694370 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2103 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3693429..3694370) Pseudomonas putida GB-1 5871078 YP_001669522.1 CDS PputGB1_3294 NC_010322.1 3694831 3695217 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3694831..3695217 Pseudomonas putida GB-1 5871079 YP_001669523.1 CDS PputGB1_3295 NC_010322.1 3695254 3695823 D KEGG: pen:PSEEN3006 hypothetical protein; hypothetical protein 3695254..3695823 Pseudomonas putida GB-1 5871080 YP_001669524.1 CDS PputGB1_3296 NC_010322.1 3695887 3697566 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3007 metabolite MFS transporter, MHS family; major facilitator superfamily transporter complement(3695887..3697566) Pseudomonas putida GB-1 5871081 YP_001669525.1 CDS PputGB1_3297 NC_010322.1 3697761 3698447 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_55240 hypothetical protein; AraC family transcriptional regulator 3697761..3698447 Pseudomonas putida GB-1 5871082 YP_001669526.1 CDS PputGB1_3298 NC_010322.1 3698430 3699311 R PFAM: fatty acid hydroxylase; KEGG: pau:PA14_55230 hypothetical protein; fatty acid hydroxylase complement(3698430..3699311) Pseudomonas putida GB-1 5871083 YP_001669527.1 CDS PputGB1_3299 NC_010322.1 3699430 3700209 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3008 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(3699430..3700209) Pseudomonas putida GB-1 5871084 YP_001669528.1 CDS PputGB1_3300 NC_010322.1 3700206 3700625 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2571 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3700206..3700625) Pseudomonas putida GB-1 5871085 YP_001669529.1 CDS PputGB1_3301 NC_010322.1 3700701 3701627 R PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2459 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3700701..3701627) Pseudomonas putida GB-1 5871086 YP_001669530.1 CDS PputGB1_3302 NC_010322.1 3701819 3706288 D PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3009 hypothetical protein; hypothetical protein 3701819..3706288 Pseudomonas putida GB-1 5871087 YP_001669531.1 CDS PputGB1_3303 NC_010322.1 3706293 3708737 R PFAM: UvrD/REP helicase; KEGG: pen:PSEEN3010 helicase; UvrD/REP family; UvrD/REP helicase complement(3706293..3708737) Pseudomonas putida GB-1 5871088 YP_001669532.1 CDS PputGB1_3304 NC_010322.1 3708924 3709622 D PFAM: Pirin domain protein; KEGG: pen:PSEEN3011 hypothetical protein; pirin domain-containing protein 3708924..3709622 Pseudomonas putida GB-1 5871089 YP_001669533.1 CDS PputGB1_3305 NC_010322.1 3709775 3710674 R KEGG: bur:Bcep18194_B3157 MetA-pathway phenol degradation-like protein; MetA-pathway phenol degradation-like protein complement(3709775..3710674) Pseudomonas putida GB-1 5871090 YP_001669534.1 CDS PputGB1_3306 NC_010322.1 3710751 3711812 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: azo:azo2439 probable phenol hydroxylase, subunit P5; oxidoreductase FAD-binding subunit complement(3710751..3711812) Pseudomonas putida GB-1 5871091 YP_001669535.1 CDS PputGB1_3307 NC_010322.1 3711824 3712183 R PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1783 phenol hydroxylase conserved region; phenol hydroxylase region complement(3711824..3712183) Pseudomonas putida GB-1 5871092 YP_001669536.1 CDS PputGB1_3308 NC_010322.1 3712249 3713763 R PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: azo:azo2441 probable phenol hydroxylase, subunit P3; methane/phenol/toluene hydroxylase complement(3712249..3713763) Pseudomonas putida GB-1 5871093 YP_001669537.1 CDS PputGB1_3309 NC_010322.1 3713796 3714065 R PFAM: monooxygenase component MmoB/DmpM; KEGG: rme:Rmet_1785 monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM complement(3713796..3714065) Pseudomonas putida GB-1 5871094 YP_001669538.1 CDS PputGB1_3310 NC_010322.1 3714062 3715057 R PFAM: methane/phenol/toluene hydroxylase; KEGG: mpt:Mpe_A3308 phenol hydrolase beta subunit; phenol 2-monooxygenase complement(3714062..3715057) Pseudomonas putida GB-1 5871095 YP_001669539.1 CDS PputGB1_3311 NC_010322.1 3715113 3715370 R PFAM: Phenol hydroxylase subunit; KEGG: mpt:Mpe_A3309 phenol hydrolase assembly protein; phenol hydroxylase subunit complement(3715113..3715370) Pseudomonas putida GB-1 5871096 YP_001669540.1 CDS PputGB1_3312 NC_010322.1 3715746 3717434 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3204 transcriptional regulator, fis family; putative sigma-54 specific transcriptional regulator 3715746..3717434 Pseudomonas putida GB-1 5871097 YP_001669541.1 CDS PputGB1_3313 NC_010322.1 3717602 3718507 D TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 3717602..3718507 Pseudomonas putida GB-1 5871098 YP_001669542.1 CDS PputGB1_3314 NC_010322.1 3718757 3721528 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3301 non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein 3718757..3721528 Pseudomonas putida GB-1 5871099 YP_001669543.1 CDS PputGB1_3315 NC_010322.1 3721626 3722156 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_1213 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3721626..3722156 Pseudomonas putida GB-1 5871100 YP_001669544.1 CDS PputGB1_3316 NC_010322.1 3722153 3723106 D PFAM: FecR protein; KEGG: psa:PST_4175 probable transmembrane sensor; anti-FecI sigma factor FecR 3722153..3723106 Pseudomonas putida GB-1 5871101 YP_001669545.1 CDS PputGB1_3317 NC_010322.1 3723191 3725641 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 3723191..3725641 Pseudomonas putida GB-1 5871102 YP_001669546.1 CDS PputGB1_3318 NC_010322.1 3725677 3726717 R PFAM: luciferase family protein; KEGG: pae:PA1186 hypothetical protein; luciferase family protein complement(3725677..3726717) Pseudomonas putida GB-1 5871103 YP_001669547.1 CDS PputGB1_3319 NC_010322.1 3726847 3727737 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_4195 probable transcriptional regulator; LysR family transcriptional regulator 3726847..3727737 Pseudomonas putida GB-1 5871104 YP_001669548.1 CDS PputGB1_3320 NC_010322.1 3727760 3729610 R KEGG: bxe:Bxe_A4359 hypothetical protein; hypothetical protein complement(3727760..3729610) Pseudomonas putida GB-1 5871105 YP_001669549.1 CDS PputGB1_3321 NC_010322.1 3729690 3730175 R KEGG: pen:PSEEN3260 hypothetical protein; hypothetical protein complement(3729690..3730175) Pseudomonas putida GB-1 5871106 YP_001669550.1 CDS PputGB1_3322 NC_010322.1 3730234 3732720 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: atu:Atu5311 TonB-dependent receptor; TonB-dependent siderophore receptor complement(3730234..3732720) Pseudomonas putida GB-1 5871107 YP_001669551.1 CDS PputGB1_3323 NC_010322.1 3732835 3733782 R PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(3732835..3733782) Pseudomonas putida GB-1 5871108 YP_001669552.1 CDS PputGB1_3324 NC_010322.1 3733786 3734295 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2531 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3733786..3734295) Pseudomonas putida GB-1 5871109 YP_001669553.1 CDS PputGB1_3325 NC_010322.1 3734467 3734985 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mms:mma_1233 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3734467..3734985 Pseudomonas putida GB-1 5871110 YP_001669554.1 CDS PputGB1_3326 NC_010322.1 3734982 3735953 D PFAM: FecR protein; KEGG: mms:mma_1214 Fe2+-dicitrate sensor, membrane component; anti-FecI sigma factor FecR 3734982..3735953 Pseudomonas putida GB-1 5871111 YP_001669555.1 CDS PputGB1_3327 NC_010322.1 3736052 3738451 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN3225 TonB-dependent siderophore receptor FpvA; TonB-dependent siderophore receptor 3736052..3738451 Pseudomonas putida GB-1 5871112 YP_001669556.1 CDS PputGB1_3328 NC_010322.1 3738524 3739582 R PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN3417 sigma-54 dependent transcriptional regulator; response regulator receiver protein complement(3738524..3739582) Pseudomonas putida GB-1 5871113 YP_001669557.1 CDS PputGB1_3329 NC_010322.1 3739877 3740950 D KEGG: pen:PSEEN3419 ABC transporter, periplasmic sulfonate-binding protein; ABC transporter periplasmic sulfonate-binding protein 3739877..3740950 Pseudomonas putida GB-1 5871114 YP_001669558.1 CDS PputGB1_3330 NC_010322.1 3740962 3742185 D PFAM: secretory lipase; KEGG: pen:PSEEN3420 hypothetical protein; secretory lipase 3740962..3742185 Pseudomonas putida GB-1 5871115 YP_001669559.1 CDS PputGB1_3331 NC_010322.1 3742198 3743397 D KEGG: pfl:PFL_2922 monooxygenase, SsuD family; alkanesulfonate monooxygenase 3742198..3743397 Pseudomonas putida GB-1 5871116 YP_001669560.1 CDS PputGB1_3332 NC_010322.1 3743402 3744955 D PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_2921 peptide ABC transporter, periplasmic peptide-binding protein, putative; extracellular solute-binding protein 3743402..3744955 Pseudomonas putida GB-1 5871117 YP_001669561.1 CDS PputGB1_3333 NC_010322.1 3745183 3747759 D PFAM: TonB-dependent receptor plug; KEGG: pfl:PFL_2919 TonB-dependent receptor, putative; TonB-dependent receptor plug 3745183..3747759 Pseudomonas putida GB-1 5871118 YP_001669562.1 CDS PputGB1_3334 NC_010322.1 3747787 3748875 D PFAM: luciferase family protein; KEGG: pfl:PFL_2918 monooxygenase, SsuD family; alkanesulfonate monooxygenase 3747787..3748875 Pseudomonas putida GB-1 5871119 YP_001669563.1 CDS PputGB1_3335 NC_010322.1 3749008 3750792 R KEGG: pfl:PFL_3161 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(3749008..3750792) Pseudomonas putida GB-1 5871120 YP_001669564.1 CDS PputGB1_3336 NC_010322.1 3750789 3751616 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3162 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3750789..3751616) Pseudomonas putida GB-1 5871121 YP_001669565.1 CDS PputGB1_3337 NC_010322.1 3751609 3752685 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfl:PFL_3163 peptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(3751609..3752685) Pseudomonas putida GB-1 5871122 YP_001669566.1 CDS PputGB1_3338 NC_010322.1 3752678 3754252 R PFAM: extracellular solute-binding protein family 5; KEGG: pfl:PFL_3164 peptide ABC transporter, periplasmic peptide-binding protein, putative; extracellular solute-binding protein complement(3752678..3754252) Pseudomonas putida GB-1 5871123 YP_001669567.1 CDS PputGB1_3339 NC_010322.1 3754263 3755450 R KEGG: pfl:PFL_3165 monooxygenase, SsuD family; alkanesulfonate monooxygenase complement(3754263..3755450) Pseudomonas putida GB-1 5871124 YP_001669568.1 CDS PputGB1_3340 NC_010322.1 3755524 3756255 R PFAM: class II aldolase/adducin family protein; KEGG: pen:PSEEN3423 hypothetical protein; class II aldolase/adducin family protein complement(3755524..3756255) Pseudomonas putida GB-1 5871125 YP_001669569.1 CDS PputGB1_3341 NC_010322.1 3756274 3757335 R KEGG: pen:PSEEN3424 hypothetical protein; hypothetical protein complement(3756274..3757335) Pseudomonas putida GB-1 5871126 YP_001669570.1 CDS PputGB1_3342 NC_010322.1 3757626 3758858 D PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3425 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 3757626..3758858 Pseudomonas putida GB-1 5871127 YP_001669571.1 CDS PputGB1_3343 NC_010322.1 3758951 3760726 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3426 ABC transporter; ATP-binding and memebrane protein; ABC transporter-like protein 3758951..3760726 Pseudomonas putida GB-1 5871128 YP_001669572.1 CDS PputGB1_3344 NC_010322.1 3760719 3762566 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3427 ABC transporter, ATP-binding and membrane protein; ABC transporter-like protein 3760719..3762566 Pseudomonas putida GB-1 5871129 YP_001669573.1 CDS PputGB1_3345 NC_010322.1 3762867 3764015 D PFAM: luciferase family protein; KEGG: pen:PSEEN3428 FMNH2-dependent alkanesulfonate monooxygenase; alkanesulfonate monooxygenase 3762867..3764015 Pseudomonas putida GB-1 5871130 YP_001669574.1 CDS PputGB1_3346 NC_010322.1 3764035 3765099 D KEGG: pen:PSEEN3429 hypothetical protein; hypothetical protein 3764035..3765099 Pseudomonas putida GB-1 5871131 YP_001669575.1 CDS PputGB1_3347 NC_010322.1 3765096 3766154 D KEGG: pen:PSEEN3430 hypothetical protein; hypothetical protein 3765096..3766154 Pseudomonas putida GB-1 5871132 YP_001669576.1 CDS PputGB1_3348 NC_010322.1 3766359 3768602 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3436 TonB-dependent siderophore receptor; TonB-dependent receptor 3766359..3768602 Pseudomonas putida GB-1 5871133 YP_001669577.1 CDS PputGB1_3349 NC_010322.1 3768720 3771167 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3437 TonB-dependent siderophore receptor; TonB-dependent receptor 3768720..3771167 Pseudomonas putida GB-1 5871134 YP_001669578.1 CDS PputGB1_3350 NC_010322.1 3771365 3772117 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3438 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3771365..3772117 Pseudomonas putida GB-1 5871135 YP_001669579.1 CDS PputGB1_3351 NC_010322.1 3772128 3772883 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3439 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3772128..3772883 Pseudomonas putida GB-1 5871136 YP_001669580.1 CDS PputGB1_3352 NC_010322.1 3772895 3773680 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3440 ABC transporter, ATP-binding protein; ABC transporter-like protein 3772895..3773680 Pseudomonas putida GB-1 5871137 YP_001669581.1 CDS PputGB1_3353 NC_010322.1 3773739 3784565 R PFAM: Hemolysin-type calcium-binding region; Animal haem peroxidase; KEGG: mes:Meso_0791 animal haem peroxidase; heme peroxidase complement(3773739..3784565) Pseudomonas putida GB-1 5871138 YP_001669582.1 CDS PputGB1_3354 NC_010322.1 3785111 3786847 D KEGG: nmu:Nmul_A1280 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 3785111..3786847 Pseudomonas putida GB-1 5871139 YP_001669583.1 CDS PputGB1_3355 NC_010322.1 3786854 3788194 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: nmu:Nmul_A1281 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 3786854..3788194 Pseudomonas putida GB-1 5871140 YP_001669584.1 CDS PputGB1_3356 NC_010322.1 3788196 3789524 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_5374 ABC transporter, permease protein; TolC family type I secretion outer membrane protein 3788196..3789524 Pseudomonas putida GB-1 5871141 YP_001669585.1 CDS PputGB1_3357 NC_010322.1 3789598 3790461 D KEGG: pen:PSEEN3270 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3789598..3790461 Pseudomonas putida GB-1 5871142 YP_001669586.1 CDS PputGB1_3358 NC_010322.1 3790495 3792921 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: reu:Reut_B3686 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3790495..3792921) Pseudomonas putida GB-1 5871143 YP_001669587.1 CDS PputGB1_3359 NC_010322.1 3793030 3794013 R PFAM: FecR protein; KEGG: neu:NE1098 putative transmembrane sensor; anti-FecI sigma factor FecR complement(3793030..3794013) Pseudomonas putida GB-1 5871144 YP_001669588.1 CDS PputGB1_3360 NC_010322.1 3794014 3794526 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_3271 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(3794014..3794526) Pseudomonas putida GB-1 5871145 YP_001669589.1 CDS PputGB1_3361 NC_010322.1 3794617 3795285 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2169 hypothetical protein; type 12 methyltransferase 3794617..3795285 Pseudomonas putida GB-1 5871146 YP_001669590.1 CDS PputGB1_3362 NC_010322.1 3795422 3797329 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pen:PSEEN2014 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(3795422..3797329) Pseudomonas putida GB-1 5871147 YP_001669591.1 CDS PputGB1_3363 NC_010322.1 3797618 3798991 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN2013 major facilitator family transporter; major facilitator superfamily transporter 3797618..3798991 Pseudomonas putida GB-1 5871148 YP_001669592.1 CDS PputGB1_3364 NC_010322.1 3799027 3800439 R PFAM: Pyridoxal-dependent decarboxylase; KEGG: pen:PSEEN2370 tyrosine decarboxylase; aromatic-L-amino-acid decarboxylase complement(3799027..3800439) Pseudomonas putida GB-1 5871149 YP_001669593.1 CDS PputGB1_3365 NC_010322.1 3800522 3801466 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2369 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3800522..3801466) Pseudomonas putida GB-1 5871150 YP_001669594.1 CDS PputGB1_3366 NC_010322.1 3801604 3802317 R PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN2368 hypothetical protein; hypothetical protein complement(3801604..3802317) Pseudomonas putida GB-1 5871151 YP_001669595.1 CDS PputGB1_3367 NC_010322.1 3802415 3803806 R TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2401 hypothetical protein; aminophosphonate oxidoreductase complement(3802415..3803806) Pseudomonas putida GB-1 5871152 YP_001669596.1 CDS PputGB1_3368 NC_010322.1 3803821 3805137 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2400 sugar MFS transporter; major facilitator superfamily transporter complement(3803821..3805137) Pseudomonas putida GB-1 5871153 YP_001669597.1 CDS PputGB1_3369 NC_010322.1 3805381 3806277 D TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2399 transcriptional regulator, LysR family; LysR family transcriptional regulator 3805381..3806277 Pseudomonas putida GB-1 5871154 YP_001669598.1 CDS PputGB1_3370 NC_010322.1 3806301 3806672 D KEGG: pen:PSEEN2397 hypothetical protein; hypothetical protein 3806301..3806672 Pseudomonas putida GB-1 5871155 YP_001669599.1 CDS PputGB1_3371 NC_010322.1 3806662 3807438 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2396 trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase complement(3806662..3807438) Pseudomonas putida GB-1 5871156 YP_001669600.1 CDS PputGB1_3372 NC_010322.1 3807575 3808966 R PFAM: amino acid permease-associated region; KEGG: pfl:PFL_6228 proline-specific permease ProY; amino acid permease-associated protein complement(3807575..3808966) Pseudomonas putida GB-1 5871157 YP_001669601.1 CDS PputGB1_3373 NC_010322.1 3809047 3809871 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: pfl:PFL_6227 phytanoyl-CoA dioxygenase, PhyH family; phytanoyl-CoA dioxygenase complement(3809047..3809871) Pseudomonas putida GB-1 5871158 YP_001669602.1 CDS PputGB1_3374 NC_010322.1 3810007 3810933 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A0473 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 3810007..3810933 Pseudomonas putida GB-1 5871159 YP_001669603.1 CDS PputGB1_3376 NC_010322.1 3811556 3812011 R KEGG: bur:Bcep18194_C7498 hypothetical protein; hypothetical protein complement(3811556..3812011) Pseudomonas putida GB-1 5871161 YP_001669604.1 CDS PputGB1_3377 NC_010322.1 3812441 3813271 D hypothetical protein 3812441..3813271 Pseudomonas putida GB-1 5871162 YP_001669605.1 CDS PputGB1_3378 NC_010322.1 3813383 3813991 R hypothetical protein complement(3813383..3813991) Pseudomonas putida GB-1 5871163 YP_001669606.1 CDS PputGB1_3379 NC_010322.1 3814170 3814709 D hypothetical protein 3814170..3814709 Pseudomonas putida GB-1 5871164 YP_001669607.1 CDS PputGB1_3380 NC_010322.1 3814908 3815195 D KEGG: lpc:LPC_1833 hypothetical protein; hypothetical protein 3814908..3815195 Pseudomonas putida GB-1 5871165 YP_001669608.1 CDS PputGB1_3381 NC_010322.1 3815494 3815697 R hypothetical protein complement(3815494..3815697) Pseudomonas putida GB-1 5871166 YP_001669609.1 CDS PputGB1_3382 NC_010322.1 3815697 3815990 R KEGG: psp:PSPPH_4947 hypothetical protein; hypothetical protein complement(3815697..3815990) Pseudomonas putida GB-1 5871167 YP_001669610.1 CDS PputGB1_3383 NC_010322.1 3816419 3817360 D KEGG: pmy:Pmen_2248 hypothetical protein; hypothetical protein 3816419..3817360 Pseudomonas putida GB-1 5871168 YP_001669611.1 CDS PputGB1_3384 NC_010322.1 3817353 3818723 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pen:PSEEN3029 chromate transporter; chromate transporter 3817353..3818723 Pseudomonas putida GB-1 5871169 YP_001669612.1 CDS PputGB1_3385 NC_010322.1 3819053 3819697 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rso:RSc0073 probable transporter transmembrane protein; lysine exporter protein LysE/YggA 3819053..3819697 Pseudomonas putida GB-1 5871170 YP_001669613.1 CDS PputGB1_3386 NC_010322.1 3819879 3820103 R hypothetical protein complement(3819879..3820103) Pseudomonas putida GB-1 5871171 YP_001669614.1 CDS PputGB1_3387 NC_010322.1 3820146 3820679 R KEGG: psb:Psyr_2766 hypothetical protein; hypothetical protein complement(3820146..3820679) Pseudomonas putida GB-1 5871172 YP_001669615.1 CDS PputGB1_3388 NC_010322.1 3820676 3821107 R PFAM: glycoside hydrolase family 24; KEGG: cvi:CV_0727 probable phage-related lysozyme; lysozyme complement(3820676..3821107) Pseudomonas putida GB-1 5871173 YP_001669616.1 CDS PputGB1_3389 NC_010322.1 3821510 3821737 R hypothetical protein complement(3821510..3821737) Pseudomonas putida GB-1 5871174 YP_001669617.1 CDS PputGB1_3390 NC_010322.1 3821811 3822776 R KEGG: acb:A1S_2022 putative tail fiber; hypothetical protein complement(3821811..3822776) Pseudomonas putida GB-1 5871175 YP_001669618.1 CDS PputGB1_3391 NC_010322.1 3822786 3823841 R hypothetical protein complement(3822786..3823841) Pseudomonas putida GB-1 5871176 YP_001669619.1 CDS PputGB1_3392 NC_010322.1 3823841 3831043 R PFAM: Fibronectin type III domain protein; Protein of unknown function DUF1983; KEGG: pst:PSPTO_4041 host specificity protein J, internal deletion; hypothetical protein complement(3823841..3831043) Pseudomonas putida GB-1 5871177 YP_001669620.1 CDS PputGB1_3393 NC_010322.1 3831043 3831441 R KEGG: pst:PSPTO_4042 hypothetical protein; hypothetical protein complement(3831043..3831441) Pseudomonas putida GB-1 5871178 YP_001669621.1 CDS PputGB1_3394 NC_010322.1 3831444 3832046 R KEGG: pst:PSPTO_4043 hypothetical protein; hypothetical protein complement(3831444..3832046) Pseudomonas putida GB-1 5871179 YP_001669622.1 CDS PputGB1_3395 NC_010322.1 3832046 3832630 R KEGG: pst:PSPTO_4044 hypothetical protein; hypothetical protein complement(3832046..3832630) Pseudomonas putida GB-1 5871180 YP_001669623.1 CDS PputGB1_3396 NC_010322.1 3832647 3835373 R TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure; KEGG: pst:PSPTO_4046 tail tape meausure protein; lambda family phage tail tape measure protein complement(3832647..3835373) Pseudomonas putida GB-1 5871181 YP_001669624.1 CDS PputGB1_3397 NC_010322.1 3835430 3835744 R KEGG: eba:ebA1855 hypothetical protein; hypothetical protein complement(3835430..3835744) Pseudomonas putida GB-1 5871182 YP_001669625.1 CDS PputGB1_3398 NC_010322.1 3836111 3836569 R hypothetical protein complement(3836111..3836569) Pseudomonas putida GB-1 5871183 YP_001669626.1 CDS PputGB1_3399 NC_010322.1 3836562 3837137 R KEGG: nha:Nham_3777 hypothetical protein; hypothetical protein complement(3836562..3837137) Pseudomonas putida GB-1 5871184 YP_001669627.1 CDS PputGB1_3400 NC_010322.1 3837134 3837988 R PFAM: BRO domain protein; KEGG: plu:plu2952 hypothetical protein; prophage antirepressor complement(3837134..3837988) Pseudomonas putida GB-1 5871185 YP_001669628.1 CDS PputGB1_3401 NC_010322.1 3838063 3838221 R PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein complement(3838063..3838221) Pseudomonas putida GB-1 5871186 YP_001669629.1 CDS PputGB1_3402 NC_010322.1 3838336 3838743 D PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein 3838336..3838743 Pseudomonas putida GB-1 5871187 YP_001669630.1 CDS PputGB1_3403 NC_010322.1 3838925 3839500 D KEGG: nme:NMB1330 hypothetical protein; hypothetical protein 3838925..3839500 Pseudomonas putida GB-1 5871188 YP_001669631.1 CDS PputGB1_3404 NC_010322.1 3839642 3840247 R KEGG: rba:RB4084 hypothetical protein; hypothetical protein complement(3839642..3840247) Pseudomonas putida GB-1 5871189 YP_001669632.1 CDS PputGB1_3405 NC_010322.1 3840443 3840736 D KEGG: xac:XAC2177 hypothetical protein; hypothetical protein 3840443..3840736 Pseudomonas putida GB-1 5871190 YP_001669633.1 CDS PputGB1_3406 NC_010322.1 3840938 3841234 R PFAM: Protein of unknown function DUF1799 phage-related; KEGG: psb:Psyr_2781 hypothetical protein; hypothetical protein complement(3840938..3841234) Pseudomonas putida GB-1 5871191 YP_001669634.1 CDS PputGB1_3407 NC_010322.1 3841252 3841635 R PFAM: Domain of unknown function DUF1789; KEGG: psb:Psyr_2782 hypothetical protein; hypothetical protein complement(3841252..3841635) Pseudomonas putida GB-1 5871192 YP_001669635.1 CDS PputGB1_3408 NC_010322.1 3841645 3842304 R PFAM: tail protein 3; KEGG: psb:Psyr_2783 hypothetical protein; tail protein 3 complement(3841645..3842304) Pseudomonas putida GB-1 5871193 YP_001669636.1 CDS PputGB1_3409 NC_010322.1 3842371 3842961 R hypothetical protein complement(3842371..3842961) Pseudomonas putida GB-1 5871194 YP_001669637.1 CDS PputGB1_3410 NC_010322.1 3843022 3843444 R KEGG: psb:Psyr_2784 hypothetical protein; hypothetical protein complement(3843022..3843444) Pseudomonas putida GB-1 5871195 YP_001669638.1 CDS PputGB1_3411 NC_010322.1 3843441 3844115 R KEGG: pfl:PFL_3757 hypothetical protein; hypothetical protein complement(3843441..3844115) Pseudomonas putida GB-1 5871196 YP_001669639.1 CDS PputGB1_3412 NC_010322.1 3844117 3844509 R KEGG: pst:PSPTO_2079 hypothetical protein; hypothetical protein complement(3844117..3844509) Pseudomonas putida GB-1 5871197 YP_001669640.1 CDS PputGB1_3413 NC_010322.1 3844512 3844904 R KEGG: cko:CKO_01862 hypothetical protein; hypothetical protein complement(3844512..3844904) Pseudomonas putida GB-1 5871198 YP_001669641.1 CDS PputGB1_3414 NC_010322.1 3844945 3845529 R KEGG: pfl:PFL_3760 hypothetical protein; hypothetical protein complement(3844945..3845529) Pseudomonas putida GB-1 5871199 YP_001669642.1 CDS PputGB1_3415 NC_010322.1 3845578 3846522 R KEGG: pfl:PFL_3761 hypothetical protein; hypothetical protein complement(3845578..3846522) Pseudomonas putida GB-1 5871200 YP_001669643.1 CDS PputGB1_3416 NC_010322.1 3846533 3847252 R KEGG: pfl:PFL_3762 hypothetical protein; hypothetical protein complement(3846533..3847252) Pseudomonas putida GB-1 5871201 YP_001669644.1 CDS PputGB1_3417 NC_010322.1 3847681 3848724 R TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; KEGG: psb:Psyr_2792 phage putative head morphogenesis protein, SPP1 gp7; SPP1 family phage head morphogenesis protein complement(3847681..3848724) Pseudomonas putida GB-1 5871202 YP_001669645.1 CDS PputGB1_3418 NC_010322.1 3848714 3850138 R KEGG: pfl:PFL_3765 hypothetical protein; hypothetical protein complement(3848714..3850138) Pseudomonas putida GB-1 5871203 YP_001669646.1 CDS PputGB1_3419 NC_010322.1 3850147 3851448 R PFAM: protein of unknown function DUF264; KEGG: pfl:PFL_3766 hypothetical protein; hypothetical protein complement(3850147..3851448) Pseudomonas putida GB-1 5871204 YP_001669647.1 CDS PputGB1_3420 NC_010322.1 3851435 3851896 R KEGG: psb:Psyr_2795 hypothetical protein; hypothetical protein complement(3851435..3851896) Pseudomonas putida GB-1 5871205 YP_001669648.1 CDS PputGB1_3421 NC_010322.1 3851928 3852536 R KEGG: pfl:PFL_3768 hypothetical protein; hypothetical protein complement(3851928..3852536) Pseudomonas putida GB-1 5871206 YP_001669649.1 CDS PputGB1_3422 NC_010322.1 3852611 3852940 D hypothetical protein 3852611..3852940 Pseudomonas putida GB-1 5871207 YP_001669650.1 CDS PputGB1_3423 NC_010322.1 3852958 3853389 R PFAM: 20S proteasome A and B subunits; KEGG: psb:Psyr_2798 hypothetical protein; 20S proteasome subunits A and B complement(3852958..3853389) Pseudomonas putida GB-1 5871208 YP_001669651.1 CDS PputGB1_3424 NC_010322.1 3853386 3853550 R hypothetical protein complement(3853386..3853550) Pseudomonas putida GB-1 5871209 YP_001669652.1 CDS PputGB1_3425 NC_010322.1 3853601 3853864 R KEGG: pap:PSPA7_2402 hypothetical protein; hypothetical protein complement(3853601..3853864) Pseudomonas putida GB-1 5871210 YP_001669653.1 CDS PputGB1_3426 NC_010322.1 3853866 3854189 R KEGG: pap:PSPA7_2401 peptidase M48, Ste24p; peptidase M48, Ste24p complement(3853866..3854189) Pseudomonas putida GB-1 5871211 YP_001669654.1 CDS PputGB1_3427 NC_010322.1 3854709 3855254 R KEGG: pfl:PFL_3772 hypothetical protein; hypothetical protein complement(3854709..3855254) Pseudomonas putida GB-1 5871213 YP_001669655.1 CDS PputGB1_3428 NC_010322.1 3855251 3855397 R hypothetical protein complement(3855251..3855397) Pseudomonas putida GB-1 5871214 YP_001669656.1 CDS PputGB1_3429 NC_010322.1 3855394 3855999 R PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein; lambda NinG family protein complement(3855394..3855999) Pseudomonas putida GB-1 5871215 YP_001669657.1 CDS PputGB1_3430 NC_010322.1 3855996 3856199 R hypothetical protein complement(3855996..3856199) Pseudomonas putida GB-1 5871216 YP_001669658.1 CDS PputGB1_3431 NC_010322.1 3856196 3856357 R hypothetical protein complement(3856196..3856357) Pseudomonas putida GB-1 5871217 YP_001669659.1 CDS PputGB1_3432 NC_010322.1 3856354 3856824 R hypothetical protein complement(3856354..3856824) Pseudomonas putida GB-1 5871218 YP_001669660.1 CDS PputGB1_3433 NC_010322.1 3856817 3857071 R hypothetical protein complement(3856817..3857071) Pseudomonas putida GB-1 5871219 YP_001669661.1 CDS PputGB1_3434 NC_010322.1 3857068 3857337 R hypothetical protein complement(3857068..3857337) Pseudomonas putida GB-1 5871220 YP_001669662.1 CDS PputGB1_3435 NC_010322.1 3857337 3857627 R hypothetical protein complement(3857337..3857627) Pseudomonas putida GB-1 5871221 YP_001669663.1 CDS PputGB1_3436 NC_010322.1 3857627 3857818 R hypothetical protein complement(3857627..3857818) Pseudomonas putida GB-1 5871222 YP_001669664.1 CDS PputGB1_3437 NC_010322.1 3857815 3858186 R KEGG: abo:ABO_0763 hypothetical protein; hypothetical protein complement(3857815..3858186) Pseudomonas putida GB-1 5871223 YP_001669665.1 CDS PputGB1_3438 NC_010322.1 3858186 3858992 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB ATP binding domain-containing protein complement(3858186..3858992) Pseudomonas putida GB-1 5871224 YP_001669666.1 CDS PputGB1_3439 NC_010322.1 3858982 3859731 R KEGG: plu:plu3473 hypothetical protein; putative transcriptional regulator complement(3858982..3859731) Pseudomonas putida GB-1 5871225 YP_001669667.1 CDS PputGB1_3440 NC_010322.1 3859901 3860758 R PFAM: BRO domain protein; KEGG: pfl:PFL_3777 hypothetical protein; prophage antirepressor complement(3859901..3860758) Pseudomonas putida GB-1 5871226 YP_001669668.1 CDS PputGB1_3441 NC_010322.1 3861092 3861283 R hypothetical protein complement(3861092..3861283) Pseudomonas putida GB-1 5871227 YP_001669669.1 CDS PputGB1_3442 NC_010322.1 3861311 3861535 R KEGG: bbr:BB3521 phage regulatory protein; hypothetical protein complement(3861311..3861535) Pseudomonas putida GB-1 5871228 YP_001669670.1 CDS PputGB1_3443 NC_010322.1 3861635 3862321 D PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B; XRE family transcriptional regulator 3861635..3862321 Pseudomonas putida GB-1 5871229 YP_001669671.1 CDS PputGB1_3444 NC_010322.1 3862331 3862561 D KEGG: psb:Psyr_2813 hypothetical protein; hypothetical protein 3862331..3862561 Pseudomonas putida GB-1 5871230 YP_001669672.1 CDS PputGB1_3445 NC_010322.1 3863030 3863827 D hypothetical protein 3863030..3863827 Pseudomonas putida GB-1 5871231 YP_001669673.1 CDS PputGB1_3446 NC_010322.1 3864293 3864649 R hypothetical protein complement(3864293..3864649) Pseudomonas putida GB-1 5871232 YP_001669674.1 CDS PputGB1_3447 NC_010322.1 3864724 3864933 D hypothetical protein 3864724..3864933 Pseudomonas putida GB-1 5871233 YP_001669675.1 CDS PputGB1_3448 NC_010322.1 3865065 3865550 D hypothetical protein 3865065..3865550 Pseudomonas putida GB-1 5871234 YP_001669676.1 CDS PputGB1_3449 NC_010322.1 3865574 3865993 D KEGG: psb:Psyr_2818 hypothetical protein; hypothetical protein 3865574..3865993 Pseudomonas putida GB-1 5871235 YP_001669677.1 CDS PputGB1_3450 NC_010322.1 3865990 3866193 D hypothetical protein 3865990..3866193 Pseudomonas putida GB-1 5871236 YP_001669678.1 CDS PputGB1_3451 NC_010322.1 3866190 3866405 D hypothetical protein 3866190..3866405 Pseudomonas putida GB-1 5871237 YP_001669679.1 CDS PputGB1_3452 NC_010322.1 3866402 3866857 D hypothetical protein 3866402..3866857 Pseudomonas putida GB-1 5871238 YP_001669680.1 CDS PputGB1_3453 NC_010322.1 3866854 3866970 D hypothetical protein 3866854..3866970 Pseudomonas putida GB-1 5871239 YP_001669681.1 CDS PputGB1_3454 NC_010322.1 3867145 3868269 D KEGG: xau:Xaut_3682 hypothetical protein; hypothetical protein 3867145..3868269 Pseudomonas putida GB-1 5871240 YP_001669682.1 CDS PputGB1_3455 NC_010322.1 3868277 3869035 D PFAM: ERF family protein; KEGG: xau:Xaut_3683 ERF family protein; ERF family protein 3868277..3869035 Pseudomonas putida GB-1 5871241 YP_001669683.1 CDS PputGB1_3456 NC_010322.1 3869039 3869656 D PFAM: Exonuclease, phage-type; KEGG: xau:Xaut_3679 hypothetical protein; exonuclease, phage-type 3869039..3869656 Pseudomonas putida GB-1 5871242 YP_001669684.1 CDS PputGB1_3457 NC_010322.1 3869664 3870176 D KEGG: psb:Psyr_2836 hypothetical protein; hypothetical protein 3869664..3870176 Pseudomonas putida GB-1 5871243 YP_001669685.1 CDS PputGB1_3458 NC_010322.1 3870426 3870788 D KEGG: psp:PSPPH_2146 hypothetical protein; hypothetical protein 3870426..3870788 Pseudomonas putida GB-1 5871244 YP_001669686.1 CDS PputGB1_3459 NC_010322.1 3870846 3871148 R hypothetical protein complement(3870846..3871148) Pseudomonas putida GB-1 5871245 YP_001669687.1 CDS PputGB1_3460 NC_010322.1 3871230 3872318 D hypothetical protein 3871230..3872318 Pseudomonas putida GB-1 5871246 YP_001669688.1 CDS PputGB1_3461 NC_010322.1 3872932 3874791 D PFAM: C-5 cytosine-specific DNA methylase; KEGG: psb:Psyr_2828 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 3872932..3874791 Pseudomonas putida GB-1 5871247 YP_001669689.1 CDS PputGB1_3462 NC_010322.1 3875133 3875585 D hypothetical protein 3875133..3875585 Pseudomonas putida GB-1 5871248 YP_001669690.1 CDS PputGB1_3463 NC_010322.1 3875582 3875878 D hypothetical protein 3875582..3875878 Pseudomonas putida GB-1 5871249 YP_001669691.1 CDS PputGB1_3464 NC_010322.1 3875919 3876218 R KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein complement(3875919..3876218) Pseudomonas putida GB-1 5871250 YP_001669692.1 CDS PputGB1_3465 NC_010322.1 3876400 3876894 D KEGG: stt:t1391 hypothetical protein; hypothetical protein 3876400..3876894 Pseudomonas putida GB-1 5871251 YP_001669693.1 CDS PputGB1_3466 NC_010322.1 3876891 3877142 D hypothetical protein 3876891..3877142 Pseudomonas putida GB-1 5871252 YP_001669694.1 CDS PputGB1_3467 NC_010322.1 3877139 3877684 D hypothetical protein 3877139..3877684 Pseudomonas putida GB-1 5871253 YP_001669695.1 CDS PputGB1_3468 NC_010322.1 3877672 3878004 D hypothetical protein 3877672..3878004 Pseudomonas putida GB-1 5871254 YP_001669696.1 CDS PputGB1_3469 NC_010322.1 3878048 3878239 D hypothetical protein 3878048..3878239 Pseudomonas putida GB-1 5871255 YP_001669697.1 CDS PputGB1_3470 NC_010322.1 3878290 3878706 D hypothetical protein 3878290..3878706 Pseudomonas putida GB-1 5871256 YP_001669698.1 CDS PputGB1_3471 NC_010322.1 3878744 3879478 D PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; phosphoprotein phosphatase 3878744..3879478 Pseudomonas putida GB-1 5871257 YP_001669699.1 CDS PputGB1_3472 NC_010322.1 3879494 3879670 D KEGG: sec:SC082 hypothetical protein; hypothetical protein 3879494..3879670 Pseudomonas putida GB-1 5871258 YP_001669700.1 CDS PputGB1_3473 NC_010322.1 3879960 3881138 D PFAM: integrase family protein; KEGG: lpp:lpp2312 hypothetical protein; integrase family protein 3879960..3881138 Pseudomonas putida GB-1 5871259 YP_001669701.1 CDS PputGB1_3474 NC_010322.1 3881386 3881742 R PFAM: regulatory protein MerR; KEGG: pen:PSEEN1970 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3881386..3881742) Pseudomonas putida GB-1 5871261 YP_001669702.1 CDS ihfA NC_010322.1 3881723 3882025 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(3881723..3882025) Pseudomonas putida GB-1 5871262 YP_001669703.1 CDS pheT NC_010322.1 3882030 3884411 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3882030..3884411) Pseudomonas putida GB-1 5871263 YP_001669704.1 CDS pheS NC_010322.1 3884445 3885461 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3884445..3885461) Pseudomonas putida GB-1 5871264 YP_001669705.1 CDS rplT NC_010322.1 3885571 3885927 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3885571..3885927) Pseudomonas putida GB-1 5871265 YP_001669706.1 CDS rpmI NC_010322.1 3885955 3886149 R PFAM: ribosomal protein L35; KEGG: pen:PSEEN1965 50S ribosomal subunit protein A; 50S ribosomal protein L35 complement(3885955..3886149) Pseudomonas putida GB-1 5871266 YP_001669707.1 CDS infC NC_010322.1 3886210 3886761 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(3886210..3886761) Pseudomonas putida GB-1 5871267 YP_001669708.1 CDS thrS NC_010322.1 3886761 3888683 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(3886761..3888683) Pseudomonas putida GB-1 5871268 YP_001669709.1 CDS PputGB1_3482 NC_010322.1 3889021 3889326 D KEGG: pen:PSEEN1962 hypothetical protein; hypothetical protein 3889021..3889326 Pseudomonas putida GB-1 5871269 YP_001669710.1 CDS PputGB1_3483 NC_010322.1 3889490 3889702 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pfl:PFL_2109 cold shock protein CapA, fragment-related protein; cold-shock DNA-binding domain-containing protein 3889490..3889702 Pseudomonas putida GB-1 5871270 YP_001669711.1 CDS PputGB1_3484 NC_010322.1 3889827 3890147 R KEGG: pen:PSEEN1960 hypothetical protein; hypothetical protein complement(3889827..3890147) Pseudomonas putida GB-1 5871271 YP_001669712.1 CDS PputGB1_3485 NC_010322.1 3890382 3890633 D KEGG: pen:PSEEN1959 hypothetical protein; hypothetical protein 3890382..3890633 Pseudomonas putida GB-1 5871272 YP_001669713.1 CDS PputGB1_3486 NC_010322.1 3890605 3891606 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pen:PSEEN1958 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase complement(3890605..3891606) Pseudomonas putida GB-1 5871273 YP_001669714.1 CDS PputGB1_3487 NC_010322.1 3891663 3892061 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(3891663..3892061) Pseudomonas putida GB-1 5871274 YP_001669715.1 CDS PputGB1_3488 NC_010322.1 3892058 3892966 R TIGRFAM: ribokinase; PFAM: PfkB domain protein; KEGG: pen:PSEEN1956 ribokinase RbsK; ribokinase complement(3892058..3892966) Pseudomonas putida GB-1 5871275 YP_001669716.1 CDS PputGB1_3489 NC_010322.1 3892982 3894004 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1955 ribose operon repressor RbsR; LacI family transcriptional regulator complement(3892982..3894004) Pseudomonas putida GB-1 5871276 YP_001669717.1 CDS PputGB1_3490 NC_010322.1 3894009 3895004 R PFAM: inner-membrane translocator; KEGG: pen:PSEEN1954 ribose ABC transporter, permease protein RbsC; monosaccharide-transporting ATPase complement(3894009..3895004) Pseudomonas putida GB-1 5871277 YP_001669718.1 CDS PputGB1_3491 NC_010322.1 3895001 3896554 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1953 ribose ABC transporter, ATP-binding protein RbsA; ABC transporter-like protein complement(3895001..3896554) Pseudomonas putida GB-1 5871278 YP_001669719.1 CDS PputGB1_3492 NC_010322.1 3896574 3897533 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1952 ribose ABC transporter, periplasmic ribose-binding protein RbsB; monosaccharide-transporting ATPase complement(3896574..3897533) Pseudomonas putida GB-1 5871279 YP_001669720.1 CDS PputGB1_3493 NC_010322.1 3897842 3898930 D KEGG: pen:PSEEN1951 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; type II L-asparaginase 3897842..3898930 Pseudomonas putida GB-1 5871280 YP_001669721.1 CDS PputGB1_3494 NC_010322.1 3899112 3899534 R TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: pen:PSEEN3090 homoprotocatechuate degradative operon repressor; MarR family transcriptional regulator complement(3899112..3899534) Pseudomonas putida GB-1 5871281 YP_001669722.1 CDS PputGB1_3495 NC_010322.1 3899690 3900640 R TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3091 4-hydroxyphenylacetate catabolism regulatory protein HpaA; AraC family transcriptional regulator complement(3899690..3900640) Pseudomonas putida GB-1 5871282 YP_001669723.1 CDS PputGB1_3496 NC_010322.1 3900767 3901426 D KEGG: pen:PSEEN3092 4-hydroxyphenylacetate degradation; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HhdD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG1 3900767..3901426 Pseudomonas putida GB-1 5871283 YP_001669724.1 CDS PputGB1_3497 NC_010322.1 3901437 3902201 D KEGG: pen:PSEEN3093 4-hydroxyphenylacetate degradation bifunctional; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase (5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase) (OPET decarboxylase); TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit; PFAM: fumarylacetoacetate (FAA) hydrolase; 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 3901437..3902201 Pseudomonas putida GB-1 5871284 YP_001669725.1 CDS PputGB1_3498 NC_010322.1 3902198 3903667 D TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN3094 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (CHMS dehydrogenase); 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 3902198..3903667 Pseudomonas putida GB-1 5871285 YP_001669726.1 CDS PputGB1_3499 NC_010322.1 3903745 3904668 D KEGG: pen:PSEEN3095 3,4-dihydroxyphenylacetate 2,3-dioxygenase (homoprotocatechuate 2,3-dioxygenase) (HPC dioxygenase); TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; 3,4-dihydroxyphenylacetate 2,3-dioxygenase 3903745..3904668 Pseudomonas putida GB-1 5871286 YP_001669727.1 CDS PputGB1_3500 NC_010322.1 3904732 3905136 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pen:PSEEN3096 5-carboxymethyl-2-hydroxymuconate delta-isomerase (5-carboxymethyl-2-hydroxymuconic acid isomerase) (CHM isomerase) (CHMI); 5-carboxymethyl-2-hydroxymuconate isomerase 3904732..3905136 Pseudomonas putida GB-1 5871287 YP_001669728.1 CDS PputGB1_3501 NC_010322.1 3905190 3906497 D PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_0966 probable MFS transporter; major facilitator superfamily transporter 3905190..3906497 Pseudomonas putida GB-1 5871288 YP_001669729.1 CDS PputGB1_3502 NC_010322.1 3906515 3907318 D KEGG: pen:PSEEN3097 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (OHED hydratase); TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 3906515..3907318 Pseudomonas putida GB-1 5871289 YP_001669730.1 CDS PputGB1_3503 NC_010322.1 3907329 3908132 D KEGG: pen:PSEEN3098 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, with PEP/pyruvate domain; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: HpcH/HpaI aldolase; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 3907329..3908132 Pseudomonas putida GB-1 5871290 YP_001669731.1 CDS PputGB1_3504 NC_010322.1 3908182 3909111 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3104 P-hydroxyphenylacetate hydroxylase C1:reductase component; flavin reductase domain-containing protein complement(3908182..3909111) Pseudomonas putida GB-1 5871291 YP_001669732.1 CDS PputGB1_3505 NC_010322.1 3909190 3910359 R PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3105 P-hydroxyphenylacetate hydroxylase C2:oxygenase component; type 2 acyl-CoA dehydrogenase complement(3909190..3910359) Pseudomonas putida GB-1 5871292 YP_001669733.1 CDS PputGB1_3506 NC_010322.1 3910562 3911161 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN3089 transcriptional regulator, TetR family; TetR family transcriptional regulator 3910562..3911161 Pseudomonas putida GB-1 5871293 YP_001669734.1 CDS PputGB1_3507 NC_010322.1 3911173 3911595 R TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein MarR; KEGG: pen:PSEEN3090 homoprotocatechuate degradative operon repressor; MarR family transcriptional regulator complement(3911173..3911595) Pseudomonas putida GB-1 5871294 YP_001669735.1 CDS PputGB1_3508 NC_010322.1 3911841 3913139 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3099 oxidoreductase; aromatic-ring hydroxylase; FAD dependent oxidoreductase 3911841..3913139 Pseudomonas putida GB-1 5871295 YP_001669736.1 CDS PputGB1_3509 NC_010322.1 3913170 3913535 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN3100 hypothetical protein; hypothetical protein 3913170..3913535 Pseudomonas putida GB-1 5871296 YP_001669737.1 CDS PputGB1_3510 NC_010322.1 3913517 3914461 R activator of genes involved in phenylacetic acid catabolism; DNA-binding transcriptional activator FeaR complement(3913517..3914461) Pseudomonas putida GB-1 5871297 YP_001669738.1 CDS PputGB1_3511 NC_010322.1 3914575 3915147 R KEGG: pen:PSEEN3102 hypothetical protein; hypothetical protein complement(3914575..3915147) Pseudomonas putida GB-1 5871298 YP_001669739.1 CDS PputGB1_3512 NC_010322.1 3915128 3916624 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3103 amino acid permease; amino acid permease-associated protein complement(3915128..3916624) Pseudomonas putida GB-1 5871299 YP_001669740.1 CDS PputGB1_3513 NC_010322.1 3917001 3918488 D PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN3107 aldehyde dehydrogenase; aldehyde dehydrogenase 3917001..3918488 Pseudomonas putida GB-1 5871300 YP_001669741.1 CDS PputGB1_3514 NC_010322.1 3918667 3919977 D KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 3918667..3919977 Pseudomonas putida GB-1 5871301 YP_001669742.1 CDS PputGB1_3515 NC_010322.1 3920194 3921411 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3088 bicyclomycin/multidrug transport protein (MFS superfamily); Bcr/CflA subfamily drug resistance transporter 3920194..3921411 Pseudomonas putida GB-1 5871302 YP_001669743.1 CDS PputGB1_3516 NC_010322.1 3921537 3922676 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 3921537..3922676 Pseudomonas putida GB-1 5871303 YP_001669744.1 CDS PputGB1_3517 NC_010322.1 3922709 3923131 D PFAM: Endoribonuclease L-PSP; KEGG: mmw:Mmwyl1_3167 endoribonuclease L-PSP; endoribonuclease L-PSP 3922709..3923131 Pseudomonas putida GB-1 5871304 YP_001669745.1 CDS PputGB1_3518 NC_010322.1 3923185 3924480 D PFAM: FAD dependent oxidoreductase; KEGG: mmw:Mmwyl1_0459 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3923185..3924480 Pseudomonas putida GB-1 5871305 YP_001669746.1 CDS PputGB1_3519 NC_010322.1 3924631 3926676 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_34990 putative TonB-dependent receptor; TonB-dependent siderophore receptor complement(3924631..3926676) Pseudomonas putida GB-1 5871306 YP_001669747.1 CDS PputGB1_3520 NC_010322.1 3926893 3927135 D PFAM: protein of unknown function DUF1654; KEGG: pen:PSEEN1950 hypothetical protein; hypothetical protein 3926893..3927135 Pseudomonas putida GB-1 5871307 YP_001669748.1 CDS PputGB1_3521 NC_010322.1 3927142 3927834 D PFAM: Endonuclease I; KEGG: pen:PSEEN1949 DNA-specific endonuclease I; deoxyribonuclease I 3927142..3927834 Pseudomonas putida GB-1 5871308 YP_001669749.1 CDS PputGB1_3522 NC_010322.1 3927838 3928263 R KEGG: pen:PSEEN1948 hypothetical protein; hypothetical protein complement(3927838..3928263) Pseudomonas putida GB-1 5871309 YP_001669750.1 CDS PputGB1_3523 NC_010322.1 3928361 3928930 R PFAM: Sporulation domain protein; KEGG: pen:PSEEN2166 hypothetical protein; sporulation domain-containing protein complement(3928361..3928930) Pseudomonas putida GB-1 5871310 YP_001669751.1 CDS PputGB1_3524 NC_010322.1 3929584 3930867 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2164 FAD-dependant oxidoreductase; FAD dependent oxidoreductase 3929584..3930867 Pseudomonas putida GB-1 5871313 YP_001669752.1 CDS PputGB1_3525 NC_010322.1 3930985 3931719 R KEGG: pen:PSEEN2163 hypothetical protein; hypothetical protein complement(3930985..3931719) Pseudomonas putida GB-1 5871314 YP_001669753.1 CDS PputGB1_3526 NC_010322.1 3931886 3932065 D KEGG: pen:PSEEN2162 hypothetical protein; hypothetical protein 3931886..3932065 Pseudomonas putida GB-1 5871315 YP_001669754.1 CDS PputGB1_3527 NC_010322.1 3932135 3932887 R PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN2161 hypothetical protein; integral membrane protein TerC complement(3932135..3932887) Pseudomonas putida GB-1 5871316 YP_001669755.1 CDS PputGB1_3528 NC_010322.1 3932916 3933155 R KEGG: pen:PSEEN2160 lipoprotein; lipoprotein complement(3932916..3933155) Pseudomonas putida GB-1 5871317 YP_001669756.1 CDS PputGB1_3529 NC_010322.1 3933286 3934179 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2159 transcriptional activator, LysR family; LysR family transcriptional regulator 3933286..3934179 Pseudomonas putida GB-1 5871318 YP_001669757.1 CDS PputGB1_3530 NC_010322.1 3934251 3935462 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3934251..3935462 Pseudomonas putida GB-1 5871319 YP_001669758.1 CDS PputGB1_3531 NC_010322.1 3935551 3936198 D PFAM: protein of unknown function DUF480; KEGG: pen:PSEEN2299 hypothetical protein; hypothetical protein 3935551..3936198 Pseudomonas putida GB-1 5871320 YP_001669759.1 CDS PputGB1_3532 NC_010322.1 3936203 3936424 R KEGG: pen:PSEEN2298 hypothetical protein; hypothetical protein complement(3936203..3936424) Pseudomonas putida GB-1 5871321 YP_001669760.1 CDS PputGB1_3533 NC_010322.1 3936559 3938121 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2297 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F complement(3936559..3938121) Pseudomonas putida GB-1 5871322 YP_001669761.1 CDS PputGB1_3534 NC_010322.1 3938246 3938809 R TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2296 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); peroxiredoxin complement(3938246..3938809) Pseudomonas putida GB-1 5871323 YP_001669762.1 CDS PputGB1_3535 NC_010322.1 3939041 3940396 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(3939041..3940396) Pseudomonas putida GB-1 5871324 YP_001669763.1 CDS PputGB1_3536 NC_010322.1 3940496 3941335 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN2294 glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase complement(3940496..3941335) Pseudomonas putida GB-1 5871325 YP_001669764.1 CDS PputGB1_3537 NC_010322.1 3941564 3942478 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2293 cytochrome c; cytochrome c class I complement(3941564..3942478) Pseudomonas putida GB-1 5871326 YP_001669765.1 CDS PputGB1_3538 NC_010322.1 3942475 3943125 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2292 cytochrome c; cytochrome c class I complement(3942475..3943125) Pseudomonas putida GB-1 5871327 YP_001669766.1 CDS PputGB1_3539 NC_010322.1 3943203 3943562 R KEGG: pen:PSEEN2290 hypothetical protein; hypothetical protein complement(3943203..3943562) Pseudomonas putida GB-1 5871328 YP_001669767.1 CDS PputGB1_3540 NC_010322.1 3943722 3944024 D PFAM: Domain of unknown function DUF1883; KEGG: pen:PSEEN2289 hypothetical protein; hypothetical protein 3943722..3944024 Pseudomonas putida GB-1 5871329 YP_001669768.1 CDS PputGB1_3541 NC_010322.1 3944032 3944202 D KEGG: pen:PSEEN2288 hypothetical protein; hypothetical protein 3944032..3944202 Pseudomonas putida GB-1 5871330 YP_001669769.1 CDS PputGB1_3542 NC_010322.1 3944254 3945339 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN2287 oxidoreductase, 2-nitropropane dioxygenase family; 2-nitropropane dioxygenase 3944254..3945339 Pseudomonas putida GB-1 5871331 YP_001669770.1 CDS PputGB1_3543 NC_010322.1 3945422 3946180 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2286 molybdate ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3945422..3946180 Pseudomonas putida GB-1 5871332 YP_001669771.1 CDS PputGB1_3544 NC_010322.1 3946180 3946860 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2285 molybdate ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 3946180..3946860 Pseudomonas putida GB-1 5871333 YP_001669772.1 CDS PputGB1_3545 NC_010322.1 3946862 3947953 D KEGG: pen:PSEEN2284 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3946862..3947953 Pseudomonas putida GB-1 5871334 YP_001669773.1 CDS PputGB1_3546 NC_010322.1 3948011 3949033 D KEGG: pen:PSEEN2283 DNA topoisomerase IB; DNA topoisomerase 3948011..3949033 Pseudomonas putida GB-1 5871335 YP_001669774.1 CDS PputGB1_3547 NC_010322.1 3949287 3949484 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3949287..3949484 Pseudomonas putida GB-1 5871336 YP_001669775.1 CDS PputGB1_3548 NC_010322.1 3949530 3949883 R PFAM: response regulator receiver; KEGG: pen:PSEEN2281 response regulator; response regulator receiver protein complement(3949530..3949883) Pseudomonas putida GB-1 5871337 YP_001669776.1 CDS PputGB1_3549 NC_010322.1 3949895 3951340 R KEGG: pen:PSEEN2280 signal transduction protein; PFAM: KaiA binding; SMART: AAA ATPase; non-specific serine/threonine protein kinase complement(3949895..3951340) Pseudomonas putida GB-1 5871338 YP_001669777.1 CDS PputGB1_3550 NC_010322.1 3951346 3952506 R KEGG: pen:PSEEN2279 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3951346..3952506) Pseudomonas putida GB-1 5871339 YP_001669778.1 CDS PputGB1_3551 NC_010322.1 3952590 3952865 R KEGG: pen:PSEEN2278 hypothetical protein; hypothetical protein complement(3952590..3952865) Pseudomonas putida GB-1 5871340 YP_001669779.1 CDS PputGB1_3552 NC_010322.1 3953255 3953668 D PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein; DoxX family protein 3953255..3953668 Pseudomonas putida GB-1 5871342 YP_001669780.1 CDS PputGB1_3553 NC_010322.1 3953670 3953867 R KEGG: pen:PSEEN2274 hypothetical protein; hypothetical protein complement(3953670..3953867) Pseudomonas putida GB-1 5871343 YP_001669781.1 CDS PputGB1_3554 NC_010322.1 3954309 3955319 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 3954309..3955319 Pseudomonas putida GB-1 5871344 YP_001669782.1 CDS PputGB1_3555 NC_010322.1 3955411 3955617 D KEGG: psb:Psyr_3356 hypothetical protein; hypothetical protein 3955411..3955617 Pseudomonas putida GB-1 5871345 YP_001669783.1 CDS PputGB1_3556 NC_010322.1 3956599 3957618 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(3956599..3957618) Pseudomonas putida GB-1 5871347 YP_001669784.1 CDS PputGB1_3557 NC_010322.1 3957816 3958526 D PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2270 phosphoglycerate mutase family protein; phosphoglycerate mutase 3957816..3958526 Pseudomonas putida GB-1 5871348 YP_001669785.1 CDS PputGB1_3558 NC_010322.1 3958583 3958900 D PFAM: Sterol-binding domain protein; KEGG: pfo:Pfl_3116 sterol-binding; sterol-binding domain-containing protein 3958583..3958900 Pseudomonas putida GB-1 5871349 YP_001669786.1 CDS PputGB1_3559 NC_010322.1 3959086 3960153 D PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN2268 aminoglycoside aminotranferase; aminoglycoside phosphotransferase 3959086..3960153 Pseudomonas putida GB-1 5871350 YP_001669787.1 CDS PputGB1_3560 NC_010322.1 3960189 3960956 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2267 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3960189..3960956 Pseudomonas putida GB-1 5871351 YP_001669788.1 CDS PputGB1_3561 NC_010322.1 3960957 3961778 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2266 hypothetical protein; type 12 methyltransferase complement(3960957..3961778) Pseudomonas putida GB-1 5871352 YP_001669789.1 CDS PputGB1_3562 NC_010322.1 3961890 3962240 R KEGG: pen:PSEEN2264 hypothetical protein; hypothetical protein complement(3961890..3962240) Pseudomonas putida GB-1 5871353 YP_001669790.1 CDS PputGB1_3563 NC_010322.1 3962313 3963473 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase complement(3962313..3963473) Pseudomonas putida GB-1 5871354 YP_001669791.1 CDS PputGB1_3564 NC_010322.1 3963963 3964355 D PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN2262 hypothetical protein; 17 kDa surface antigen 3963963..3964355 Pseudomonas putida GB-1 5871355 YP_001669792.1 CDS PputGB1_3565 NC_010322.1 3964482 3966311 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2261 transporter, sodium:sulfate symporter family; citrate transporter 3964482..3966311 Pseudomonas putida GB-1 5871356 YP_001669793.1 CDS PputGB1_3566 NC_010322.1 3966491 3967873 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN2260 diguanylate cyclase (GGDEF) domain; diguanylate cyclase 3966491..3967873 Pseudomonas putida GB-1 5871357 YP_001669794.1 CDS PputGB1_3567 NC_010322.1 3967875 3968636 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein; hypothetical protein complement(3967875..3968636) Pseudomonas putida GB-1 5871358 YP_001669795.1 CDS PputGB1_3568 NC_010322.1 3968735 3969640 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2258 transcriptional regulator, LysR family; LysR family transcriptional regulator 3968735..3969640 Pseudomonas putida GB-1 5871359 YP_001669796.1 CDS PputGB1_3569 NC_010322.1 3969771 3969965 R KEGG: pen:PSEEN2257 hypothetical protein; hypothetical protein complement(3969771..3969965) Pseudomonas putida GB-1 5871360 YP_001669798.1 CDS PputGB1_3571 NC_010322.1 3970334 3970690 R PFAM: Variant SH3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN2253 hypothetical protein; SH3 domain-containing protein complement(3970334..3970690) Pseudomonas putida GB-1 5871362 YP_001669799.1 CDS PputGB1_3572 NC_010322.1 3970896 3971936 D PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl_2255 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3970896..3971936 Pseudomonas putida GB-1 5871363 YP_001669800.1 CDS PputGB1_3573 NC_010322.1 3972229 3972414 D hypothetical protein 3972229..3972414 Pseudomonas putida GB-1 5871364 YP_001669801.1 CDS PputGB1_3574 NC_010322.1 3972498 3973790 R PFAM: outer membrane porin; KEGG: psa:PST_1676 benzoate-specific porin; outer membrane porin complement(3972498..3973790) Pseudomonas putida GB-1 5871365 YP_001669802.1 CDS PputGB1_3575 NC_010322.1 3973930 3975243 R PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2307 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3973930..3975243) Pseudomonas putida GB-1 5871366 YP_001669803.1 CDS PputGB1_3576 NC_010322.1 3975452 3976093 R PFAM: isochorismatase hydrolase; KEGG: spe:Spro_2308 N-carbamoylsarcosine amidase; isochorismatase hydrolase complement(3975452..3976093) Pseudomonas putida GB-1 5871367 YP_001669804.1 CDS PputGB1_3577 NC_010322.1 3976108 3976860 R PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_2309 Asp/Glu racemase; Asp/Glu/hydantoin racemase complement(3976108..3976860) Pseudomonas putida GB-1 5871368 YP_001669805.1 CDS PputGB1_3578 NC_010322.1 3976874 3977680 R PFAM: alpha/beta hydrolase fold; KEGG: spe:Spro_2310 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3976874..3977680) Pseudomonas putida GB-1 5871369 YP_001669806.1 CDS PputGB1_3579 NC_010322.1 3977677 3978825 R PFAM: monooxygenase FAD-binding; KEGG: spe:Spro_2311 monooxygenase FAD-binding; monooxygenase FAD-binding complement(3977677..3978825) Pseudomonas putida GB-1 5871370 YP_001669807.1 CDS PputGB1_3580 NC_010322.1 3979146 3980198 D KEGG: spe:Spro_2312 hypothetical protein; hypothetical protein 3979146..3980198 Pseudomonas putida GB-1 5871371 YP_001669808.1 CDS PputGB1_3581 NC_010322.1 3980268 3980744 D PFAM: regulatory protein MarR; KEGG: azc:AZC_2473 transcriptional regulator; MarR family transcriptional regulator 3980268..3980744 Pseudomonas putida GB-1 5871372 YP_001669809.1 CDS PputGB1_3582 NC_010322.1 3980945 3981418 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pap:PSPA7_3672 probable oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3980945..3981418 Pseudomonas putida GB-1 5871373 YP_001669810.1 CDS PputGB1_3583 NC_010322.1 3981415 3984978 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cytochrome c class I; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: spe:Spro_2315 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3981415..3984978 Pseudomonas putida GB-1 5871374 YP_001669811.1 CDS PputGB1_3584 NC_010322.1 3984982 3985620 R PFAM: regulatory protein TetR; KEGG: bxe:Bxe_B0653 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3984982..3985620) Pseudomonas putida GB-1 5871375 YP_001669812.1 CDS PputGB1_3585 NC_010322.1 3985726 3986688 D PFAM: protein of unknown function DUF182; KEGG: pap:PSPA7_5263 hypothetical protein; hypothetical protein 3985726..3986688 Pseudomonas putida GB-1 5871376 YP_001669813.1 CDS PputGB1_3586 NC_010322.1 3986715 3987998 R TIGRFAM: salicylate 1-monooxygenase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aci:ACIAD1424 salicylate 1-monooxygenase; salicylate 1-monooxygenase complement(3986715..3987998) Pseudomonas putida GB-1 5871377 YP_001669814.1 CDS PputGB1_3587 NC_010322.1 3988110 3989447 R PFAM: General substrate transporter; protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: eba:ebA5311 benzoate MFS transporter; major facilitator superfamily transporter complement(3988110..3989447) Pseudomonas putida GB-1 5871378 YP_001669815.1 CDS PputGB1_3588 NC_010322.1 3989682 3990587 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2518 LysR-family transcriptional regulator; LysR family transcriptional regulator 3989682..3990587 Pseudomonas putida GB-1 5871379 YP_001669816.1 CDS PputGB1_3589 NC_010322.1 3990644 3991798 R PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA3773 hypothetical protein; major facilitator superfamily transporter complement(3990644..3991798) Pseudomonas putida GB-1 5871380 YP_001669817.1 CDS PputGB1_3590 NC_010322.1 3992080 3993297 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3992080..3993297 Pseudomonas putida GB-1 5871381 YP_001669818.1 CDS PputGB1_3591 NC_010322.1 3993370 3994248 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3993370..3994248) Pseudomonas putida GB-1 5871382 YP_001669819.1 CDS PputGB1_3592 NC_010322.1 3994360 3994809 R PFAM: GCN5-related N-acetyltransferase; KEGG: rde:RD1_3192 acetyltransferase, putative; N-acetyltransferase GCN5 complement(3994360..3994809) Pseudomonas putida GB-1 5871383 YP_001669820.1 CDS PputGB1_3593 NC_010322.1 3995038 3995733 D KEGG: bxe:Bxe_B0643 3-oxoadipate CoA-transferase subunit A (PcaI); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3995038..3995733 Pseudomonas putida GB-1 5871384 YP_001669821.1 CDS PputGB1_3594 NC_010322.1 3995742 3996383 D KEGG: bmu:Bmul_5287 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 3995742..3996383 Pseudomonas putida GB-1 5871385 YP_001669822.1 CDS PputGB1_3595 NC_010322.1 3996627 3996800 R hypothetical protein complement(3996627..3996800) Pseudomonas putida GB-1 5871386 YP_001669823.1 CDS PputGB1_3596 NC_010322.1 3997186 3997857 D PFAM: protein of unknown function UPF0005; KEGG: pen:PSEEN2225 hypothetical protein; hypothetical protein 3997186..3997857 Pseudomonas putida GB-1 5871388 YP_001669824.1 CDS PputGB1_3597 NC_010322.1 3998037 3999416 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN2224 transporter, xanthine/uracil permease family; xanthine permease 3998037..3999416 Pseudomonas putida GB-1 5871389 YP_001669825.1 CDS PputGB1_3598 NC_010322.1 3999593 3999985 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3999593..3999985 Pseudomonas putida GB-1 5871390 YP_001669826.1 CDS PputGB1_3599 NC_010322.1 3999987 4000346 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3999987..4000346 Pseudomonas putida GB-1 5871391 YP_001669827.1 CDS PputGB1_3600 NC_010322.1 4000346 4000642 D TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: pen:PSEEN2221 hypothetical protein; sulfur relay protein TusB/DsrH 4000346..4000642 Pseudomonas putida GB-1 5871392 YP_001669828.1 CDS PputGB1_3601 NC_010322.1 4000639 4000974 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pen:PSEEN2220 sulfite reductase, gamma subunit DsrC-like; TusE/DsrC/DsvC family sulfur relay protein 4000639..4000974 Pseudomonas putida GB-1 5871393 YP_001669829.1 CDS PputGB1_3602 NC_010322.1 4000971 4001972 D PFAM: glycosyl transferase family 3; KEGG: pen:PSEEN2219 phosphoribosyltransferase; hypothetical protein 4000971..4001972 Pseudomonas putida GB-1 5871394 YP_001669830.1 CDS PputGB1_3603 NC_010322.1 4002069 4003028 D KEGG: pen:PSEEN2218 hypothetical protein; hypothetical protein 4002069..4003028 Pseudomonas putida GB-1 5871395 YP_001669831.1 CDS PputGB1_3604 NC_010322.1 4003062 4004453 R TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2217 siroheme synthase; uroporphyrin-III C-methyltransferase complement(4003062..4004453) Pseudomonas putida GB-1 5871396 YP_001669832.1 CDS PputGB1_3605 NC_010322.1 4004454 4005734 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(4004454..4005734) Pseudomonas putida GB-1 5871397 YP_001669833.1 CDS PputGB1_3606 NC_010322.1 4005765 4006139 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(4005765..4006139) Pseudomonas putida GB-1 5871398 YP_001669834.1 CDS PputGB1_3607 NC_010322.1 4006136 4007461 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2214 DNA-dependant ATPase; recombination factor protein RarA complement(4006136..4007461) Pseudomonas putida GB-1 5871399 YP_001669835.1 CDS lolA NC_010322.1 4007474 4008097 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(4007474..4008097) Pseudomonas putida GB-1 5871400 YP_001669836.1 CDS PputGB1_3609 NC_010322.1 4008160 4010583 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: pen:PSEEN2212 cell division protein FtsK; cell division protein FtsK complement(4008160..4010583) Pseudomonas putida GB-1 5871401 YP_001669837.1 CDS aat NC_010322.1 4011022 4011702 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 4011022..4011702 Pseudomonas putida GB-1 5871402 YP_001669838.1 CDS PputGB1_3611 NC_010322.1 4011759 4012466 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 4011759..4012466 Pseudomonas putida GB-1 5871403 YP_001669839.1 CDS infA NC_010322.1 4012569 4012787 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 4012569..4012787 Pseudomonas putida GB-1 5871404 YP_001669840.1 CDS PputGB1_3613 NC_010322.1 4012873 4015143 R KEGG: pen:PSEEN2207 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(4012873..4015143) Pseudomonas putida GB-1 5871405 YP_001669841.1 CDS clpS NC_010322.1 4015174 4015536 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(4015174..4015536) Pseudomonas putida GB-1 5871406 YP_001669842.1 CDS PputGB1_3615 NC_010322.1 4015767 4016021 D KEGG: pen:PSEEN2205 cold-shock protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 4015767..4016021 Pseudomonas putida GB-1 5871407 YP_001669843.1 CDS PputGB1_3616 NC_010322.1 4016093 4017349 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pen:PSEEN2204 isocitrate dehydrogenase; isocitrate dehydrogenase complement(4016093..4017349) Pseudomonas putida GB-1 5871408 YP_001669844.1 CDS PputGB1_3617 NC_010322.1 4017764 4019989 D KEGG: pen:PSEEN2202 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 4017764..4019989 Pseudomonas putida GB-1 5871409 YP_001669845.1 CDS PputGB1_3618 NC_010322.1 4020211 4020651 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2201 hydrolase, NUDIX family; NUDIX hydrolase 4020211..4020651 Pseudomonas putida GB-1 5871410 YP_001669846.1 CDS mnmA NC_010322.1 4020711 4021835 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4020711..4021835 Pseudomonas putida GB-1 5871411 YP_001669847.1 CDS PputGB1_3620 NC_010322.1 4021832 4022458 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 4021832..4022458 Pseudomonas putida GB-1 5871412 YP_001669848.1 CDS PputGB1_3621 NC_010322.1 4022600 4024018 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4022600..4024018 Pseudomonas putida GB-1 5871413 YP_001669849.1 CDS PputGB1_3622 NC_010322.1 4024100 4025266 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: pen:PSEEN2197 hypothetical protein; cupin 4 family protein 4024100..4025266 Pseudomonas putida GB-1 5871414 YP_001669850.1 CDS PputGB1_3623 NC_010322.1 4025259 4025687 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2196 acetyl transferase, GNAT family; N-acetyltransferase GCN5 4025259..4025687 Pseudomonas putida GB-1 5871415 YP_001669851.1 CDS PputGB1_3624 NC_010322.1 4025856 4027814 D decatenates replicating daughter chromosomes; DNA topoisomerase III 4025856..4027814 Pseudomonas putida GB-1 5871416 YP_001669852.1 CDS PputGB1_3625 NC_010322.1 4027892 4029181 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2188 oxidoreductase with FAD/NAD(P)-binding domain; FAD dependent oxidoreductase 4027892..4029181 Pseudomonas putida GB-1 5871417 YP_001669853.1 CDS PputGB1_3626 NC_010322.1 4029263 4030093 D PFAM: alpha/beta hydrolase fold; KEGG: pfo:Pfl_2172 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 4029263..4030093 Pseudomonas putida GB-1 5871418 YP_001669854.1 CDS PputGB1_3627 NC_010322.1 4030234 4031013 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2185 hypothetical protein; hypothetical protein 4030234..4031013 Pseudomonas putida GB-1 5871419 YP_001669855.1 CDS nudC NC_010322.1 4030981 4031811 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(4030981..4031811) Pseudomonas putida GB-1 5871420 YP_001669856.1 CDS PputGB1_3629 NC_010322.1 4031849 4032661 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4031849..4032661) Pseudomonas putida GB-1 5871421 YP_001669857.1 CDS nhaB NC_010322.1 4032812 4034314 D involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 4032812..4034314 Pseudomonas putida GB-1 5871422 YP_001669858.1 CDS PputGB1_3631 NC_010322.1 4034445 4035062 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: pen:PSEEN2180 hypothetical protein; deaminase-reductase domain-containing protein 4034445..4035062 Pseudomonas putida GB-1 5871423 YP_001669859.1 CDS PputGB1_3632 NC_010322.1 4035141 4035686 D PFAM: Lipocalin family protein; KEGG: pmy:Pmen_0511 lipocalin family protein; lipocalin family protein 4035141..4035686 Pseudomonas putida GB-1 5871424 YP_001669860.1 CDS PputGB1_3633 NC_010322.1 4035756 4036217 D KEGG: psb:Psyr_2640 NUDIX hydrolase; NUDIX hydrolase 4035756..4036217 Pseudomonas putida GB-1 5871425 YP_001669861.1 CDS PputGB1_3634 NC_010322.1 4036235 4037194 D PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN2683 ribonuclease Z; ribonuclease Z 4036235..4037194 Pseudomonas putida GB-1 5871426 YP_001669862.1 CDS PputGB1_3635 NC_010322.1 4037201 4037770 D KEGG: pen:PSEEN3303 hypothetical protein; hypothetical protein 4037201..4037770 Pseudomonas putida GB-1 5871427 YP_001669863.1 CDS PputGB1_3636 NC_010322.1 4037789 4039072 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(4037789..4039072) Pseudomonas putida GB-1 5871428 YP_001669864.1 CDS PputGB1_3637 NC_010322.1 4039084 4040601 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3254 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease complement(4039084..4040601) Pseudomonas putida GB-1 5871429 YP_001669865.1 CDS PputGB1_3638 NC_010322.1 4040945 4042384 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 4040945..4042384 Pseudomonas putida GB-1 5871430 YP_001669866.1 CDS PputGB1_3639 NC_010322.1 4042468 4043835 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 4042468..4043835 Pseudomonas putida GB-1 5871431 YP_001669867.1 CDS PputGB1_3640 NC_010322.1 4043836 4045110 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 4043836..4045110 Pseudomonas putida GB-1 5871432 YP_001669868.1 CDS PputGB1_3641 NC_010322.1 4045286 4045906 R PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN3246 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4045286..4045906) Pseudomonas putida GB-1 5871433 YP_001669869.1 CDS PputGB1_3642 NC_010322.1 4045906 4046262 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_4319 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4045906..4046262) Pseudomonas putida GB-1 5871434 YP_001669870.1 CDS PputGB1_3643 NC_010322.1 4046322 4046609 R TIGRFAM: addiction module antidote protein, HigA family; KEGG: pen:PSEEN1946 proteic killer active protein; XRE family plasmid maintenance system antidote protein complement(4046322..4046609) Pseudomonas putida GB-1 5871435 YP_001669871.1 CDS PputGB1_3644 NC_010322.1 4046625 4046951 R PFAM: plasmid maintenance system killer; KEGG: pen:PSEEN1945 proteic killer suppression protein; plasmid maintenance system killer protein complement(4046625..4046951) Pseudomonas putida GB-1 5871436 YP_001669872.1 CDS PputGB1_3645 NC_010322.1 4047020 4048816 R PFAM: glycoside hydrolase 15-related; KEGG: pen:PSEEN1941 glycosyl hydrolase, family 15; glycoside hydrolase 15-related complement(4047020..4048816) Pseudomonas putida GB-1 5871437 YP_001669873.1 CDS PputGB1_3646 NC_010322.1 4048961 4050466 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(4048961..4050466) Pseudomonas putida GB-1 5871438 YP_001669874.1 CDS PputGB1_3647 NC_010322.1 4050463 4051446 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(4050463..4051446) Pseudomonas putida GB-1 5871439 YP_001669875.1 CDS PputGB1_3648 NC_010322.1 4051651 4051818 D KEGG: pen:PSEEN1938 hypothetical protein; hypothetical protein 4051651..4051818 Pseudomonas putida GB-1 5871440 YP_001669876.1 CDS glgA NC_010322.1 4052354 4053913 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 4052354..4053913 Pseudomonas putida GB-1 5871441 YP_001669877.1 CDS PputGB1_3650 NC_010322.1 4053928 4055670 D KEGG: pen:PSEEN2053 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 4053928..4055670 Pseudomonas putida GB-1 5871442 YP_001669878.1 CDS PputGB1_3651 NC_010322.1 4055667 4057736 D KEGG: pen:PSEEN2052 4-alpha-glucanotransferase MalQ; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 4055667..4057736 Pseudomonas putida GB-1 5871443 YP_001669879.1 CDS PputGB1_3652 NC_010322.1 4057733 4060507 D KEGG: pen:PSEEN2051 maltooligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; maltooligosyl trehalose synthase 4057733..4060507 Pseudomonas putida GB-1 5871444 YP_001669880.1 CDS PputGB1_3653 NC_010322.1 4060522 4060788 D KEGG: pen:PSEEN2050 hypothetical protein; hypothetical protein 4060522..4060788 Pseudomonas putida GB-1 5871445 YP_001669881.1 CDS PputGB1_3654 NC_010322.1 4060940 4063093 D KEGG: pen:PSEEN2049 glycosyl hydrolase GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 4060940..4063093 Pseudomonas putida GB-1 5871446 YP_001669882.1 CDS PputGB1_3655 NC_010322.1 4063166 4063960 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfl:PFL_2876 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase 4063166..4063960 Pseudomonas putida GB-1 5871447 YP_001669883.1 CDS PputGB1_3656 NC_010322.1 4064279 4065355 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN2047 outer membrane, autotransporter barrel domain protein; outer membrane autotransporter 4064279..4065355 Pseudomonas putida GB-1 5871448 YP_001669884.1 CDS PputGB1_3657 NC_010322.1 4065479 4067689 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(4065479..4067689) Pseudomonas putida GB-1 5871449 YP_001669885.1 CDS PputGB1_3658 NC_010322.1 4067686 4071006 R KEGG: pen:PSEEN2045 trehalose synthase/glycosidase fusion protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase complement(4067686..4071006) Pseudomonas putida GB-1 5871450 YP_001669886.1 CDS PputGB1_3659 NC_010322.1 4071057 4073075 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pen:PSEEN2044 glycosidase, alpha-amylase family protein; alpha amylase complement(4071057..4073075) Pseudomonas putida GB-1 5871451 YP_001669887.1 CDS PputGB1_3660 NC_010322.1 4073215 4073376 D KEGG: pen:PSEEN2043 hypothetical protein; hypothetical protein 4073215..4073376 Pseudomonas putida GB-1 5871452 YP_001669888.1 CDS PputGB1_3661 NC_010322.1 4073516 4075198 R activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein complement(4073516..4075198) Pseudomonas putida GB-1 5871453 YP_001669889.1 CDS PputGB1_3662 NC_010322.1 4075418 4076581 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3386 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 4075418..4076581 Pseudomonas putida GB-1 5871454 YP_001669890.1 CDS PputGB1_3663 NC_010322.1 4076602 4078209 D PFAM: carboxyl transferase; KEGG: pen:PSEEN3387 3-methylcrotonyl-CoA carboxylase, beta subunit; propionyl-CoA carboxylase 4076602..4078209 Pseudomonas putida GB-1 5871455 YP_001669891.1 CDS PputGB1_3664 NC_010322.1 4078213 4079028 D catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 4078213..4079028 Pseudomonas putida GB-1 5871456 YP_001669892.1 CDS PputGB1_3665 NC_010322.1 4079025 4080977 D PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pen:PSEEN3389 methylcrotonoyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase L chain ATP-binding 4079025..4080977 Pseudomonas putida GB-1 5871457 YP_001669893.1 CDS PputGB1_3666 NC_010322.1 4081010 4081663 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN3390 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(4081010..4081663) Pseudomonas putida GB-1 5871458 YP_001669894.1 CDS PputGB1_3667 NC_010322.1 4081794 4082108 D KEGG: pen:PSEEN3391 hypothetical protein; hypothetical protein 4081794..4082108 Pseudomonas putida GB-1 5871459 YP_001669895.1 CDS PputGB1_3668 NC_010322.1 4082541 4083056 D PFAM: Sigma-70 region 4 type 2; KEGG: pen:PSEEN3392 hypothetical protein; sigma-70 region 4 type 2 4082541..4083056 Pseudomonas putida GB-1 5871460 YP_001669896.1 CDS PputGB1_3669 NC_010322.1 4083218 4084471 D PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rpa:RPA3398 possible arsenite permease; arsenical pump membrane protein 4083218..4084471 Pseudomonas putida GB-1 5871461 YP_001669897.1 CDS PputGB1_3670 NC_010322.1 4084773 4085333 R KEGG: pen:PSEEN3448 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(4084773..4085333) Pseudomonas putida GB-1 5871463 YP_001669898.1 CDS uvrC NC_010322.1 4085367 4087124 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(4085367..4087124) Pseudomonas putida GB-1 5871464 YP_001669899.1 CDS PputGB1_3672 NC_010322.1 4087285 4087830 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3450 response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family); two component LuxR family transcriptional regulator complement(4087285..4087830) Pseudomonas putida GB-1 5871465 YP_001669900.1 CDS PputGB1_3673 NC_010322.1 4087894 4088283 R SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN3451 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(4087894..4088283) Pseudomonas putida GB-1 5871466 YP_001669901.1 CDS PputGB1_3674 NC_010322.1 4088402 4088833 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(4088402..4088833) Pseudomonas putida GB-1 5871467 YP_001669902.1 CDS PputGB1_3675 NC_010322.1 4088844 4089230 R PFAM: protein of unknown function DUF488; KEGG: pen:PSEEN3465 hypothetical protein; hypothetical protein complement(4088844..4089230) Pseudomonas putida GB-1 5871468 YP_001669903.1 CDS PputGB1_3676 NC_010322.1 4089358 4090974 D PFAM: phosphate transporter; KEGG: pen:PSEEN3466 low-affinity inorganic phosphate transporter; phosphate transporter 4089358..4090974 Pseudomonas putida GB-1 5871469 YP_001669904.1 CDS PputGB1_3677 NC_010322.1 4090987 4091682 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN3467 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(4090987..4091682) Pseudomonas putida GB-1 5871470 YP_001669905.1 CDS PputGB1_3678 NC_010322.1 4091770 4092267 R KEGG: pen:PSEEN3472 hypothetical protein; hypothetical protein complement(4091770..4092267) Pseudomonas putida GB-1 5871471 YP_001669906.1 CDS PputGB1_3679 NC_010322.1 4092325 4093707 R PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN3473 gamma-aminobutyrate permease; amino acid permease-associated protein complement(4092325..4093707) Pseudomonas putida GB-1 5871472 YP_001669907.1 CDS PputGB1_3680 NC_010322.1 4093963 4094859 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3474 transcriptional regulator, LysR family; LysR family transcriptional regulator 4093963..4094859 Pseudomonas putida GB-1 5871473 YP_001669908.1 CDS PputGB1_3681 NC_010322.1 4094981 4096231 D PFAM: aminotransferase class-III; KEGG: pen:PSEEN3475 4-aminobutyrate aminotransferase, PLP-dependent; class III aminotransferase 4094981..4096231 Pseudomonas putida GB-1 5871474 YP_001669909.1 CDS PputGB1_3682 NC_010322.1 4096235 4096537 R KEGG: pen:PSEEN3476 hypothetical protein; hypothetical protein complement(4096235..4096537) Pseudomonas putida GB-1 5871475 YP_001669910.1 CDS PputGB1_3683 NC_010322.1 4096697 4097122 D KEGG: pen:PSEEN3477 hypothetical protein; hypothetical protein 4096697..4097122 Pseudomonas putida GB-1 5871476 YP_001669911.1 CDS PputGB1_3684 NC_010322.1 4097196 4099316 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4097196..4099316 Pseudomonas putida GB-1 5871477 YP_001669912.1 CDS PputGB1_3685 NC_010322.1 4099389 4100831 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN3479 probable sulfate transproter, MFS family; sulfate transporter complement(4099389..4100831) Pseudomonas putida GB-1 5871478 YP_001669913.1 CDS PputGB1_3686 NC_010322.1 4101054 4101824 D PFAM: NolW domain protein; KEGG: pen:PSEEN3480 type II secretion system protein D; signal peptide; NolW domain-containing protein 4101054..4101824 Pseudomonas putida GB-1 5871479 YP_001669914.1 CDS PputGB1_3687 NC_010322.1 4102282 4103607 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pen:PSEEN3481 isocitrate lyase; isocitrate lyase 4102282..4103607 Pseudomonas putida GB-1 5871480 YP_001669915.1 CDS PputGB1_3688 NC_010322.1 4103845 4104108 R KEGG: pen:PSEEN3574 hypothetical protein; hypothetical protein complement(4103845..4104108) Pseudomonas putida GB-1 5871481 YP_001669916.1 CDS PputGB1_3689 NC_010322.1 4104264 4104506 R KEGG: pen:PSEEN5265 hypothetical protein; hypothetical protein complement(4104264..4104506) Pseudomonas putida GB-1 5871482 YP_001669917.1 CDS PputGB1_3690 NC_010322.1 4105030 4105692 D PFAM: YhhN family protein; KEGG: pen:PSEEN3482 hypothetical protein; hypothetical protein 4105030..4105692 Pseudomonas putida GB-1 5871483 YP_001669918.1 CDS PputGB1_3691 NC_010322.1 4106074 4106487 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 4106074..4106487 Pseudomonas putida GB-1 5871484 YP_001669919.1 CDS PputGB1_3692 NC_010322.1 4106498 4107175 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 4106498..4107175 Pseudomonas putida GB-1 5871485 YP_001669920.1 CDS PputGB1_3693 NC_010322.1 4107255 4109036 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 4107255..4109036 Pseudomonas putida GB-1 5871486 YP_001669921.1 CDS PputGB1_3694 NC_010322.1 4109039 4109536 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 4109039..4109536 Pseudomonas putida GB-1 5871487 YP_001669922.1 CDS PputGB1_3695 NC_010322.1 4109533 4110897 D shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F 4109533..4110897 Pseudomonas putida GB-1 5871488 YP_001669923.1 CDS PputGB1_3696 NC_010322.1 4111031 4113745 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 4111031..4113745 Pseudomonas putida GB-1 5871489 YP_001669924.1 CDS PputGB1_3697 NC_010322.1 4113742 4114749 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 4113742..4114749 Pseudomonas putida GB-1 5871490 YP_001669925.1 CDS PputGB1_3698 NC_010322.1 4114761 4115309 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 4114761..4115309 Pseudomonas putida GB-1 5871491 YP_001669926.1 CDS PputGB1_3699 NC_010322.1 4115320 4115820 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 4115320..4115820 Pseudomonas putida GB-1 5871492 YP_001669927.1 CDS PputGB1_3700 NC_010322.1 4115824 4116132 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 4115824..4116132 Pseudomonas putida GB-1 5871493 YP_001669928.1 CDS PputGB1_3701 NC_010322.1 4116129 4117982 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 4116129..4117982 Pseudomonas putida GB-1 5871494 YP_001669929.1 CDS PputGB1_3702 NC_010322.1 4118023 4119555 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 4118023..4119555 Pseudomonas putida GB-1 5871495 YP_001669930.1 CDS PputGB1_3703 NC_010322.1 4119563 4121032 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 4119563..4121032 Pseudomonas putida GB-1 5871496 YP_001669931.1 CDS PputGB1_3704 NC_010322.1 4121122 4121385 R PFAM: transcriptional activator Ogr/delta; KEGG: csa:Csal_1361 hypothetical protein; transcriptional activator Ogr/delta complement(4121122..4121385) Pseudomonas putida GB-1 5871497 YP_001669932.1 CDS PputGB1_3705 NC_010322.1 4121565 4121945 D PFAM: CI repressor; KEGG: vvy:VV2150 hypothetical protein; CI repressor 4121565..4121945 Pseudomonas putida GB-1 5871498 YP_001669933.1 CDS PputGB1_3706 NC_010322.1 4121942 4122304 R hypothetical protein complement(4121942..4122304) Pseudomonas putida GB-1 5871499 YP_001669934.1 CDS PputGB1_3707 NC_010322.1 4122297 4122644 R hypothetical protein complement(4122297..4122644) Pseudomonas putida GB-1 5871500 YP_001669935.1 CDS PputGB1_3708 NC_010322.1 4122654 4122902 R PFAM: regulatory protein LuxR; KEGG: pap:PSPA7_3898 transcriptional regulator LasR; LuxR family transcriptional regulator complement(4122654..4122902) Pseudomonas putida GB-1 5871501 YP_001669936.1 CDS PputGB1_3710 NC_010322.1 4125278 4125838 R PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN3555 oxidoreductase, flavoprotein; NADPH-dependent FMN reductase complement(4125278..4125838) Pseudomonas putida GB-1 5871503 YP_001669937.1 CDS PputGB1_3711 NC_010322.1 4125995 4126213 D KEGG: pen:PSEEN3556 hypothetical protein; hypothetical protein 4125995..4126213 Pseudomonas putida GB-1 5871504 YP_001669938.1 CDS PputGB1_3712 NC_010322.1 4126197 4128470 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase; lysine decarboxylase complement(4126197..4128470) Pseudomonas putida GB-1 5871505 YP_001669939.1 CDS PputGB1_3713 NC_010322.1 4128539 4129297 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(4128539..4129297) Pseudomonas putida GB-1 5871506 YP_001669940.1 CDS rnhA NC_010322.1 4129349 4129795 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(4129349..4129795) Pseudomonas putida GB-1 5871507 YP_001669941.1 CDS PputGB1_3715 NC_010322.1 4129811 4130584 R KEGG: pen:PSEEN3560 hypothetical protein; hypothetical protein complement(4129811..4130584) Pseudomonas putida GB-1 5871508 YP_001669942.1 CDS PputGB1_3716 NC_010322.1 4130670 4131449 D KEGG: pen:PSEEN3561 hydroxyacylglutathione hydrolase GloB; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 4130670..4131449 Pseudomonas putida GB-1 5871509 YP_001669943.1 CDS PputGB1_3717 NC_010322.1 4131550 4132980 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: pen:PSEEN3562 membrane-bound lytic murein transglycosylase D MltD; MltD domain-containing protein 4131550..4132980 Pseudomonas putida GB-1 5871510 YP_001669944.1 CDS PputGB1_3718 NC_010322.1 4133305 4135077 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3564 ABC transporter, periplamic binding protein; extracellular solute-binding protein 4133305..4135077 Pseudomonas putida GB-1 5871511 YP_001669945.1 CDS PputGB1_3719 NC_010322.1 4135074 4136909 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3565 ABC transporter, periplamic binding protein; extracellular solute-binding protein 4135074..4136909 Pseudomonas putida GB-1 5871512 YP_001669946.1 CDS PputGB1_3720 NC_010322.1 4136911 4137984 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3566 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4136911..4137984 Pseudomonas putida GB-1 5871513 YP_001669947.1 CDS PputGB1_3721 NC_010322.1 4137986 4139005 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3567 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4137986..4139005 Pseudomonas putida GB-1 5871514 YP_001669948.1 CDS PputGB1_3722 NC_010322.1 4139007 4140614 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3568 ABC transporter, ATP-binding protein; ABC transporter-like protein 4139007..4140614 Pseudomonas putida GB-1 5871515 YP_001669949.1 CDS PputGB1_3723 NC_010322.1 4140681 4141187 D KEGG: pap:PSPA7_3407 hypothetical protein; hypothetical protein 4140681..4141187 Pseudomonas putida GB-1 5871516 YP_001669950.1 CDS PputGB1_3724 NC_010322.1 4141252 4141818 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bam:Bamb_4377 metal-dependent phosphohydrolase; metal dependent phosphohydrolase 4141252..4141818 Pseudomonas putida GB-1 5871517 YP_001669951.1 CDS PputGB1_3725 NC_010322.1 4141960 4144890 D PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: pen:PSEEN0260 aminotransferase, class III; hypothetical protein 4141960..4144890 Pseudomonas putida GB-1 5871518 YP_001669952.1 CDS PputGB1_3726 NC_010322.1 4144894 4146129 R PFAM: amine oxidase; KEGG: kra:Krad_1593 amine oxidase; amine oxidase complement(4144894..4146129) Pseudomonas putida GB-1 5871519 YP_001669953.1 CDS PputGB1_3727 NC_010322.1 4146207 4147112 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mfa:Mfla_0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 4146207..4147112 Pseudomonas putida GB-1 5871520 YP_001669954.1 CDS PputGB1_3728 NC_010322.1 4147168 4149033 D KEGG: pae:PA3713 hypothetical protein; hypothetical protein 4147168..4149033 Pseudomonas putida GB-1 5871521 YP_001669955.1 CDS PputGB1_3729 NC_010322.1 4149156 4149851 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3605 transcriptional regulator of kdp operon; two component transcriptional regulator complement(4149156..4149851) Pseudomonas putida GB-1 5871522 YP_001669956.1 CDS PputGB1_3730 NC_010322.1 4149848 4152502 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: pen:PSEEN3606 two-component sensor KdpD sensory kinase; osmosensitive K+ channel signal transduction histidine kinase complement(4149848..4152502) Pseudomonas putida GB-1 5871523 YP_001669957.1 CDS PputGB1_3731 NC_010322.1 4152563 4153114 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(4152563..4153114) Pseudomonas putida GB-1 5871524 YP_001669958.1 CDS PputGB1_3732 NC_010322.1 4153125 4155179 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(4153125..4155179) Pseudomonas putida GB-1 5871525 YP_001669959.1 CDS PputGB1_3733 NC_010322.1 4155189 4156883 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(4155189..4156883) Pseudomonas putida GB-1 5871526 YP_001669960.1 CDS PputGB1_3734 NC_010322.1 4157159 4158211 R PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3611 hypothetical protein; hypothetical protein complement(4157159..4158211) Pseudomonas putida GB-1 5871527 YP_001669961.1 CDS PputGB1_3735 NC_010322.1 4158224 4159018 R KEGG: pen:PSEEN3612 hypothetical protein; hypothetical protein complement(4158224..4159018) Pseudomonas putida GB-1 5871528 YP_001669962.1 CDS PputGB1_3736 NC_010322.1 4159128 4159982 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3613 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(4159128..4159982) Pseudomonas putida GB-1 5871529 YP_001669963.1 CDS PputGB1_3737 NC_010322.1 4159979 4160767 R KEGG: pen:PSEEN3614 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase complement(4159979..4160767) Pseudomonas putida GB-1 5871530 YP_001669964.1 CDS PputGB1_3738 NC_010322.1 4160860 4161246 R KEGG: pen:PSEEN3615 hypothetical protein; hypothetical protein complement(4160860..4161246) Pseudomonas putida GB-1 5871531 YP_001669965.1 CDS PputGB1_3739 NC_010322.1 4161364 4161822 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN3616 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA complement(4161364..4161822) Pseudomonas putida GB-1 5871532 YP_001669966.1 CDS PputGB1_3740 NC_010322.1 4161819 4162166 R KEGG: pen:PSEEN3617 hypothetical protein; hypothetical protein complement(4161819..4162166) Pseudomonas putida GB-1 5871533 YP_001669967.1 CDS gpsA NC_010322.1 4162203 4163228 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(4162203..4163228) Pseudomonas putida GB-1 5871534 YP_001669968.1 CDS PputGB1_3742 NC_010322.1 4163344 4165491 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3619 TonB-dependent receptor; TonB-dependent receptor plug 4163344..4165491 Pseudomonas putida GB-1 5871535 YP_001669969.1 CDS PputGB1_3743 NC_010322.1 4165491 4166381 D KEGG: pen:PSEEN3620 hypothetical protein; hypothetical protein 4165491..4166381 Pseudomonas putida GB-1 5871536 YP_001669970.1 CDS PputGB1_3744 NC_010322.1 4166378 4168309 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3621 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 4166378..4168309 Pseudomonas putida GB-1 5871537 YP_001669971.1 CDS PputGB1_3745 NC_010322.1 4168517 4169032 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 4168517..4169032 Pseudomonas putida GB-1 5871538 YP_001669972.1 CDS PputGB1_3746 NC_010322.1 4169044 4170264 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 4169044..4170264 Pseudomonas putida GB-1 5871539 YP_001669973.1 CDS PputGB1_3747 NC_010322.1 4170332 4171336 R PFAM: amidohydrolase 2; KEGG: pen:PSEEN3625 amidohydrolase; amidohydrolase 2 complement(4170332..4171336) Pseudomonas putida GB-1 5871540 YP_001669974.1 CDS PputGB1_3748 NC_010322.1 4171454 4172317 D PFAM: Pirin domain protein; KEGG: pen:PSEEN3626 hypothetical protein; pirin domain-containing protein 4171454..4172317 Pseudomonas putida GB-1 5871541 YP_001669975.1 CDS PputGB1_3749 NC_010322.1 4172350 4173075 R PFAM: dienelactone hydrolase; KEGG: pen:PSEEN3627 dienelactone hydrolase; dienelactone hydrolase complement(4172350..4173075) Pseudomonas putida GB-1 5871542 YP_001669976.1 CDS PputGB1_3750 NC_010322.1 4173137 4175041 R molecular chaperone; heat shock protein 90 complement(4173137..4175041) Pseudomonas putida GB-1 5871543 YP_001669977.1 CDS PputGB1_3751 NC_010322.1 4175112 4175594 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3629 hypothetical protein; thioesterase superfamily protein complement(4175112..4175594) Pseudomonas putida GB-1 5871544 YP_001669978.1 CDS PputGB1_3752 NC_010322.1 4175591 4176067 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3630 hypothetical protein; thioesterase superfamily protein complement(4175591..4176067) Pseudomonas putida GB-1 5871545 YP_001669979.1 CDS PputGB1_3753 NC_010322.1 4176222 4176524 D KEGG: pen:PSEEN3631 lipoprotein; lipoprotein 4176222..4176524 Pseudomonas putida GB-1 5871546 YP_001669980.1 CDS PputGB1_3754 NC_010322.1 4176592 4177341 R PFAM: protein of unknown function DUF599; KEGG: pen:PSEEN3632 hypothetical protein; hypothetical protein complement(4176592..4177341) Pseudomonas putida GB-1 5871547 YP_001669981.1 CDS PputGB1_3755 NC_010322.1 4177558 4178871 R PFAM: branched-chain amino acid transport system II carrier protein; KEGG: pen:PSEEN3633 branched chain amino acid transporter; branched-chain amino acid transport system II carrier protein complement(4177558..4178871) Pseudomonas putida GB-1 5871548 YP_001669982.1 CDS PputGB1_3756 NC_010322.1 4179244 4180128 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(4179244..4180128) Pseudomonas putida GB-1 5871549 YP_001669983.1 CDS sucC NC_010322.1 4180128 4181294 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(4180128..4181294) Pseudomonas putida GB-1 5871550 YP_001669984.1 CDS PputGB1_3758 NC_010322.1 4181467 4182903 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(4181467..4182903) Pseudomonas putida GB-1 5871551 YP_001669985.1 CDS PputGB1_3759 NC_010322.1 4182997 4184217 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(4182997..4184217) Pseudomonas putida GB-1 5871552 YP_001669986.1 CDS sucA NC_010322.1 4184260 4187091 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(4184260..4187091) Pseudomonas putida GB-1 5871553 YP_001669987.1 CDS sdhB NC_010322.1 4187338 4188042 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(4187338..4188042) Pseudomonas putida GB-1 5871554 YP_001669988.1 CDS sdhA NC_010322.1 4188054 4189826 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(4188054..4189826) Pseudomonas putida GB-1 5871555 YP_001669989.1 CDS PputGB1_3763 NC_010322.1 4189830 4190198 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pen:PSEEN3643 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein complement(4189830..4190198) Pseudomonas putida GB-1 5871556 YP_001669990.1 CDS PputGB1_3764 NC_010322.1 4190192 4190578 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: pen:PSEEN3644 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(4190192..4190578) Pseudomonas putida GB-1 5871557 YP_001669991.1 CDS gltA NC_010322.1 4190931 4192220 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 4190931..4192220 Pseudomonas putida GB-1 5871558 YP_001669992.1 CDS PputGB1_3766 NC_010322.1 4192296 4192904 R PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN3647 hypothetical protein; lipid-binding START domain-containing protein complement(4192296..4192904) Pseudomonas putida GB-1 5871559 YP_001669993.1 CDS PputGB1_3767 NC_010322.1 4192935 4193189 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN3648 hypothetical protein; hypothetical protein complement(4192935..4193189) Pseudomonas putida GB-1 5871560 YP_001669994.1 CDS PputGB1_3768 NC_010322.1 4193318 4193800 R KEGG: pen:PSEEN3649 hypothetical protein; hypothetical protein complement(4193318..4193800) Pseudomonas putida GB-1 5871561 YP_001669995.1 CDS PputGB1_3769 NC_010322.1 4193865 4195307 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3650 transcriptional regulator, GntR family; transcriptional regulator complement(4193865..4195307) Pseudomonas putida GB-1 5871562 YP_001669996.1 CDS PputGB1_3770 NC_010322.1 4195481 4196293 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3654 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein complement(4195481..4196293) Pseudomonas putida GB-1 5871563 YP_001669997.1 CDS PputGB1_3771 NC_010322.1 4196290 4196643 R KEGG: pen:PSEEN3655 lipoprotein; lipoprotein complement(4196290..4196643) Pseudomonas putida GB-1 5871564 YP_001669998.1 CDS PputGB1_3772 NC_010322.1 4196653 4197474 R KEGG: pen:PSEEN3656 hypothetical protein; hypothetical protein complement(4196653..4197474) Pseudomonas putida GB-1 5871565 YP_001669999.1 CDS PputGB1_3773 NC_010322.1 4197551 4198480 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN3657 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha complement(4197551..4198480) Pseudomonas putida GB-1 5871566 YP_001670000.1 CDS PputGB1_3774 NC_010322.1 4198481 4199230 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN3658 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit complement(4198481..4199230) Pseudomonas putida GB-1 5871567 YP_001670001.1 CDS PputGB1_3775 NC_010322.1 4199781 4201445 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pen:PSEEN3660 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 4199781..4201445 Pseudomonas putida GB-1 5871568 YP_001670002.1 CDS PputGB1_3776 NC_010322.1 4201516 4201917 R SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_4193 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4201516..4201917) Pseudomonas putida GB-1 5871569 YP_001670003.1 CDS PputGB1_3777 NC_010322.1 4201920 4202216 R KEGG: bur:Bcep18194_B1537 hypothetical protein; hypothetical protein complement(4201920..4202216) Pseudomonas putida GB-1 5871570 YP_001670004.1 CDS PputGB1_3778 NC_010322.1 4202311 4203636 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3661 permease, MFS superfamily; major facilitator superfamily transporter complement(4202311..4203636) Pseudomonas putida GB-1 5871571 YP_001670005.1 CDS PputGB1_3779 NC_010322.1 4203709 4204188 R KEGG: pen:PSEEN3662 hypothetical protein; hypothetical protein complement(4203709..4204188) Pseudomonas putida GB-1 5871572 YP_001670006.1 CDS PputGB1_3780 NC_010322.1 4204358 4204834 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor complement(4204358..4204834) Pseudomonas putida GB-1 5871573 YP_001670007.1 CDS PputGB1_3781 NC_010322.1 4205021 4206244 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3664 RND efflux membrane fusion protein; RND family efflux transporter MFP subunit 4205021..4206244 Pseudomonas putida GB-1 5871574 YP_001670008.1 CDS PputGB1_3782 NC_010322.1 4206245 4208209 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pen:PSEEN3665 efflux ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 4206245..4208209 Pseudomonas putida GB-1 5871575 YP_001670009.1 CDS PputGB1_3783 NC_010322.1 4208213 4209628 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3666 multidrug efflux outer membrane protein, RND family; RND efflux system outer membrane lipoprotein 4208213..4209628 Pseudomonas putida GB-1 5871576 YP_001670010.1 CDS PputGB1_3784 NC_010322.1 4209712 4211334 R KEGG: pfo:Pfl_1854 twin-arginine translocation pathway signal; hypothetical protein complement(4209712..4211334) Pseudomonas putida GB-1 5871577 YP_001670011.1 CDS PputGB1_3785 NC_010322.1 4211522 4212868 D PFAM: peptidase M19 renal dipeptidase; KEGG: psb:Psyr_1966 peptidase M19, renal dipeptidase; peptidase M19 4211522..4212868 Pseudomonas putida GB-1 5871578 YP_001670012.1 CDS PputGB1_3786 NC_010322.1 4212886 4214178 D PFAM: aminotransferase class V; KEGG: pen:PSEEN3221 aminotransferase, class V; class V aminotransferase 4212886..4214178 Pseudomonas putida GB-1 5871579 YP_001670013.1 CDS PputGB1_3787 NC_010322.1 4214218 4215186 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN3228 lipase; alpha/beta hydrolase domain-containing protein complement(4214218..4215186) Pseudomonas putida GB-1 5871580 YP_001670014.1 CDS PputGB1_3788 NC_010322.1 4215328 4216449 D SMART: transcription factor jumonji jmjC domain protein; KEGG: pfo:Pfl_1843 transcription factor jumonji, JmjC; transcription factor jumonji domain-containing protein 4215328..4216449 Pseudomonas putida GB-1 5871581 YP_001670015.1 CDS PputGB1_3789 NC_010322.1 4216523 4217491 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3668 siderophore interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 4216523..4217491 Pseudomonas putida GB-1 5871582 YP_001670016.1 CDS PputGB1_3790 NC_010322.1 4217532 4218923 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(4217532..4218923) Pseudomonas putida GB-1 5871583 YP_001670017.1 CDS PputGB1_3791 NC_010322.1 4219138 4220460 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3670 sensor histidine kinase ArmS; integral membrane sensor signal transduction histidine kinase complement(4219138..4220460) Pseudomonas putida GB-1 5871584 YP_001670018.1 CDS PputGB1_3792 NC_010322.1 4220457 4221140 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3671 DNA-binding response regulator; two component transcriptional regulator complement(4220457..4221140) Pseudomonas putida GB-1 5871585 YP_001670019.1 CDS PputGB1_3793 NC_010322.1 4221376 4222722 D KEGG: psb:Psyr_0686 hypothetical protein; hypothetical protein 4221376..4222722 Pseudomonas putida GB-1 5871586 YP_001670020.1 CDS PputGB1_3794 NC_010322.1 4222732 4223355 D PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 4222732..4223355 Pseudomonas putida GB-1 5871587 YP_001670021.1 CDS PputGB1_3795 NC_010322.1 4223379 4224002 D PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 4223379..4224002 Pseudomonas putida GB-1 5871588 YP_001670022.1 CDS PputGB1_3796 NC_010322.1 4224018 4224575 R KEGG: pen:PSEEN2871 hypothetical protein; hypothetical protein complement(4224018..4224575) Pseudomonas putida GB-1 5871589 YP_001670023.1 CDS PputGB1_3797 NC_010322.1 4224581 4225552 R PFAM: protein of unknown function DUF182; KEGG: pau:PA14_61120 putative xanthine dehydrogenase accessory factor X; hypothetical protein complement(4224581..4225552) Pseudomonas putida GB-1 5871590 YP_001670024.1 CDS PputGB1_3798 NC_010322.1 4225556 4226767 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2873 cytochrome c; gluconate 2-dehydrogenase complement(4225556..4226767) Pseudomonas putida GB-1 5871591 YP_001670025.1 CDS PputGB1_3799 NC_010322.1 4226770 4227306 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2874 oxidase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(4226770..4227306) Pseudomonas putida GB-1 5871592 YP_001670026.1 CDS PputGB1_3800 NC_010322.1 4227299 4230130 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; KEGG: pen:PSEEN2875 oxidase, large subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(4227299..4230130) Pseudomonas putida GB-1 5871593 YP_001670027.1 CDS PputGB1_3801 NC_010322.1 4230411 4232126 D PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: pen:PSEEN1818 thiol:disulfide interchange protein DsbD; protein-disulfide reductase 4230411..4232126 Pseudomonas putida GB-1 5871594 YP_001670028.1 CDS PputGB1_3802 NC_010322.1 4232126 4232962 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1817 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 4232126..4232962 Pseudomonas putida GB-1 5871595 YP_001670029.1 CDS dsbG NC_010322.1 4232964 4233722 D Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 4232964..4233722 Pseudomonas putida GB-1 5871596 YP_001670030.1 CDS PputGB1_3804 NC_010322.1 4233913 4234056 R KEGG: pen:PSEEN1815 pyoverdine synthetase A; hypothetical protein complement(4233913..4234056) Pseudomonas putida GB-1 5871597 YP_001670031.1 CDS PputGB1_3805 NC_010322.1 4234652 4234930 D PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 4234652..4234930 Pseudomonas putida GB-1 5871598 YP_001670032.1 CDS PputGB1_3806 NC_010322.1 4234921 4235802 D PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 4234921..4235802 Pseudomonas putida GB-1 5871599 YP_001670033.1 CDS PputGB1_3807 NC_010322.1 4235972 4236715 D hypothetical protein 4235972..4236715 Pseudomonas putida GB-1 5871600 YP_001670034.1 CDS PputGB1_3808 NC_010322.1 4236715 4237416 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xau:Xaut_0457 ABC transporter related; ABC transporter-like protein 4236715..4237416 Pseudomonas putida GB-1 5871601 YP_001670035.1 CDS PputGB1_3809 NC_010322.1 4237459 4250412 R catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase complement(4237459..4250412) Pseudomonas putida GB-1 5871602 YP_001670036.1 CDS PputGB1_3810 NC_010322.1 4250718 4251248 D RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 4250718..4251248 Pseudomonas putida GB-1 5871603 YP_001670037.1 CDS PputGB1_3811 NC_010322.1 4251302 4252315 R KEGG: pen:PSEEN1813 siderophore biosynthesis protein; siderophore biosynthesis protein complement(4251302..4252315) Pseudomonas putida GB-1 5871604 YP_001670038.1 CDS PputGB1_3812 NC_010322.1 4252379 4253179 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1812 periplasmic binding protein; extracellular solute-binding protein complement(4252379..4253179) Pseudomonas putida GB-1 5871605 YP_001670039.1 CDS PputGB1_3813 NC_010322.1 4253351 4253902 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN1811 exonuclease; exonuclease RNase T and DNA polymerase III 4253351..4253902 Pseudomonas putida GB-1 5871606 YP_001670040.1 CDS PputGB1_3814 NC_010322.1 4253976 4254260 D PFAM: protein of unknown function DUF1255; KEGG: pen:PSEEN1810 hypothetical protein; hypothetical protein 4253976..4254260 Pseudomonas putida GB-1 5871607 YP_001670041.1 CDS PputGB1_3815 NC_010322.1 4254403 4255098 R KEGG: pen:PSEEN1809 hypothetical protein; hypothetical protein complement(4254403..4255098) Pseudomonas putida GB-1 5871608 YP_001670042.1 CDS PputGB1_3816 NC_010322.1 4255149 4256573 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4255149..4256573 Pseudomonas putida GB-1 5871609 YP_001670043.1 CDS PputGB1_3817 NC_010322.1 4256587 4257195 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4256587..4257195 Pseudomonas putida GB-1 5871610 YP_001670044.1 CDS PputGB1_3818 NC_010322.1 4257201 4257395 D KEGG: pen:PSEEN1805 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 4257201..4257395 Pseudomonas putida GB-1 5871611 YP_001670045.1 CDS PputGB1_3819 NC_010322.1 4257392 4258333 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1804 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 4257392..4258333 Pseudomonas putida GB-1 5871612 YP_001670046.1 CDS PputGB1_3820 NC_010322.1 4258695 4260137 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 4258695..4260137 Pseudomonas putida GB-1 5871613 YP_001670047.1 CDS PputGB1_3821 NC_010322.1 4260137 4260745 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 4260137..4260745 Pseudomonas putida GB-1 5871614 YP_001670048.1 CDS PputGB1_3822 NC_010322.1 4260751 4260948 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: pen:PSEEN1800 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 4260751..4260948 Pseudomonas putida GB-1 5871615 YP_001670049.1 CDS PputGB1_3823 NC_010322.1 4260945 4261922 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1799 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 4260945..4261922 Pseudomonas putida GB-1 5871616 YP_001670050.1 CDS PputGB1_3824 NC_010322.1 4262177 4263595 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN1798 oxidase with iron-sulfur cluster; cytochrome c oxidase accessory protein CcoG 4262177..4263595 Pseudomonas putida GB-1 5871617 YP_001670051.1 CDS PputGB1_3825 NC_010322.1 4263611 4264138 D KEGG: pen:PSEEN1797 hypothetical protein; hypothetical protein 4263611..4264138 Pseudomonas putida GB-1 5871618 YP_001670052.1 CDS PputGB1_3826 NC_010322.1 4264309 4266783 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN1796 copper-transporting P-type ATPase CcoI; heavy metal translocating P-type ATPase 4264309..4266783 Pseudomonas putida GB-1 5871619 YP_001670053.1 CDS PputGB1_3827 NC_010322.1 4266762 4266977 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pen:PSEEN1795 cytochrome oxidase maturation protein, cbb3-type CcoS; cbb3-type cytochrome oxidase maturation protein 4266762..4266977 Pseudomonas putida GB-1 5871620 YP_001670054.1 CDS PputGB1_3828 NC_010322.1 4266970 4267653 D KEGG: pen:PSEEN1794 hypothetical protein; hypothetical protein 4266970..4267653 Pseudomonas putida GB-1 5871621 YP_001670055.1 CDS PputGB1_3829 NC_010322.1 4267759 4269141 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4267759..4269141 Pseudomonas putida GB-1 5871622 YP_001670056.1 CDS PputGB1_3830 NC_010322.1 4269328 4270062 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pen:PSEEN1792 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 4269328..4270062 Pseudomonas putida GB-1 5871623 YP_001670057.1 CDS PputGB1_3831 NC_010322.1 4270118 4270666 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4270118..4270666 Pseudomonas putida GB-1 5871624 YP_001670058.1 CDS recR NC_010322.1 4270794 4271396 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(4270794..4271396) Pseudomonas putida GB-1 5871625 YP_001670059.1 CDS PputGB1_3833 NC_010322.1 4271541 4271876 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1789 hypothetical protein; hypothetical protein complement(4271541..4271876) Pseudomonas putida GB-1 5871626 YP_001670060.1 CDS PputGB1_3834 NC_010322.1 4271940 4274003 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(4271940..4274003) Pseudomonas putida GB-1 5871627 YP_001670061.1 CDS PputGB1_3835 NC_010322.1 4274128 4274892 D SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1787 hypothetical protein; extracellular solute-binding protein 4274128..4274892 Pseudomonas putida GB-1 5871628 YP_001670062.1 CDS PputGB1_3836 NC_010322.1 4274990 4275478 R KEGG: pen:PSEEN1786 hypothetical protein; hypothetical protein complement(4274990..4275478) Pseudomonas putida GB-1 5871629 YP_001670063.1 CDS PputGB1_3837 NC_010322.1 4275561 4275980 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN1785 transcriptional regulator; MerR family transcriptional regulator 4275561..4275980 Pseudomonas putida GB-1 5871630 YP_001670064.1 CDS ligA NC_010322.1 4276283 4278613 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(4276283..4278613) Pseudomonas putida GB-1 5871632 YP_001670065.1 CDS zipA NC_010322.1 4278713 4279603 R interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA complement(4278713..4279603) Pseudomonas putida GB-1 5871633 YP_001670066.1 CDS PputGB1_3840 NC_010322.1 4279809 4283297 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pen:PSEEN1767 chromosome segregation SMC protein; chromosome segregation protein SMC complement(4279809..4283297) Pseudomonas putida GB-1 5871634 YP_001670067.1 CDS PputGB1_3841 NC_010322.1 4283301 4283960 R PFAM: regulatory protein GntR HTH; KEGG: pen:PSEEN1766 transcriptional regulator (GntR-family); GntR family transcriptional regulator complement(4283301..4283960) Pseudomonas putida GB-1 5871635 YP_001670068.1 CDS PputGB1_3842 NC_010322.1 4284229 4285683 D TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pen:PSEEN1765 xanthine dehydrogenase, small subunit XhdA; xanthine dehydrogenase small subunit 4284229..4285683 Pseudomonas putida GB-1 5871636 YP_001670069.1 CDS PputGB1_3843 NC_010322.1 4285676 4288075 D KEGG: pen:PSEEN1764 xanthine dehydrogenase, large subunit XhdB; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; xanthine dehydrogenase molybdopterin binding subunit 4285676..4288075 Pseudomonas putida GB-1 5871637 YP_001670070.1 CDS PputGB1_3844 NC_010322.1 4288239 4289084 D TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN1763 xanthine dehydrogenase accessory factor XdhC; xanthine dehydrogenase accessory protein XdhC 4288239..4289084 Pseudomonas putida GB-1 5871638 YP_001670071.1 CDS PputGB1_3845 NC_010322.1 4289095 4290399 D Catalyzes the deamination of guanine; guanine deaminase 4289095..4290399 Pseudomonas putida GB-1 5871639 YP_001670072.1 CDS PputGB1_3846 NC_010322.1 4290396 4291094 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(4290396..4291094) Pseudomonas putida GB-1 5871640 YP_001670073.1 CDS PputGB1_3847 NC_010322.1 4291246 4292001 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1760 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4291246..4292001) Pseudomonas putida GB-1 5871641 YP_001670074.1 CDS PputGB1_3848 NC_010322.1 4292286 4293635 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN1759 transporter; xanthine/uracil/vitamin C permease 4292286..4293635 Pseudomonas putida GB-1 5871642 YP_001670075.1 CDS PputGB1_3849 NC_010322.1 4294086 4294439 R TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: pen:PSEEN1686 transthyretin; hydroxyisourate hydrolase complement(4294086..4294439) Pseudomonas putida GB-1 5871643 YP_001670076.1 CDS PputGB1_3850 NC_010322.1 4294839 4295765 D KEGG: pen:PSEEN1685 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 4294839..4295765 Pseudomonas putida GB-1 5871644 YP_001670077.1 CDS PputGB1_3851 NC_010322.1 4295765 4296280 D KEGG: pen:PSEEN1684 hypothetical protein; hypothetical protein 4295765..4296280 Pseudomonas putida GB-1 5871645 YP_001670078.1 CDS PputGB1_3852 NC_010322.1 4296330 4296833 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4296330..4296833 Pseudomonas putida GB-1 5871646 YP_001670079.1 CDS PputGB1_3853 NC_010322.1 4296878 4298206 D PFAM: protein of unknown function DUF989; KEGG: pen:PSEEN1682 hypothetical protein; hypothetical protein 4296878..4298206 Pseudomonas putida GB-1 5871647 YP_001670080.1 CDS PputGB1_3854 NC_010322.1 4298365 4299720 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1681 xanthine/uracil permease; xanthine permease 4298365..4299720 Pseudomonas putida GB-1 5871648 YP_001670081.1 CDS PputGB1_3855 NC_010322.1 4299792 4300646 D KEGG: pen:PSEEN1680 hypothetical protein; hypothetical protein 4299792..4300646 Pseudomonas putida GB-1 5871649 YP_001670082.1 CDS PputGB1_3856 NC_010322.1 4301002 4301784 D KEGG: pen:PSEEN1679 hypothetical protein; hypothetical protein 4301002..4301784 Pseudomonas putida GB-1 5871650 YP_001670083.1 CDS PputGB1_3857 NC_010322.1 4301852 4302166 R KEGG: pen:PSEEN1678 hypothetical protein; hypothetical protein complement(4301852..4302166) Pseudomonas putida GB-1 5871651 YP_001670084.1 CDS PputGB1_3858 NC_010322.1 4302319 4304262 D PFAM: sulfatase; KEGG: pen:PSEEN1677 sulfatase; sulfatase 4302319..4304262 Pseudomonas putida GB-1 5871652 YP_001670085.1 CDS PputGB1_3859 NC_010322.1 4304316 4305230 R PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein complement(4304316..4305230) Pseudomonas putida GB-1 5871653 YP_001670086.1 CDS PputGB1_3860 NC_010322.1 4305363 4305974 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN1675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4305363..4305974 Pseudomonas putida GB-1 5871654 YP_001670087.1 CDS PputGB1_3861 NC_010322.1 4306105 4306545 R PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN1674 hypothetical protein; hypothetical protein complement(4306105..4306545) Pseudomonas putida GB-1 5871655 YP_001670088.1 CDS PputGB1_3862 NC_010322.1 4306803 4308578 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4306803..4308578 Pseudomonas putida GB-1 5871656 YP_001670089.1 CDS PputGB1_3863 NC_010322.1 4308633 4309415 D KEGG: pen:PSEEN1671 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 4308633..4309415 Pseudomonas putida GB-1 5871657 YP_001670090.1 CDS PputGB1_3864 NC_010322.1 4309469 4310362 D KEGG: pen:PSEEN1670 tartronic semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 4309469..4310362 Pseudomonas putida GB-1 5871658 YP_001670091.1 CDS PputGB1_3865 NC_010322.1 4310622 4311896 D PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase 4310622..4311896 Pseudomonas putida GB-1 5871659 YP_001670092.1 CDS PputGB1_3866 NC_010322.1 4311893 4313308 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4311893..4313308 Pseudomonas putida GB-1 5871660 YP_001670093.1 CDS PputGB1_3867 NC_010322.1 4313492 4314370 D PFAM: Urea transporter; KEGG: pen:PSEEN1667 transporter; Urea transporter 4313492..4314370 Pseudomonas putida GB-1 5871661 YP_001670094.1 CDS PputGB1_3868 NC_010322.1 4314746 4315114 R KEGG: psp:PSPPH_1154 YD repeat protein; hypothetical protein complement(4314746..4315114) Pseudomonas putida GB-1 5871662 YP_001670095.1 CDS PputGB1_3869 NC_010322.1 4315269 4316090 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pen:PSEEN1666 cation transporter, VIC family; Ion transport protein 4315269..4316090 Pseudomonas putida GB-1 5871663 YP_001670096.1 CDS PputGB1_3870 NC_010322.1 4316207 4317205 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1665 periplasmic thiosulfate-binding protein; sulfate ABC transporter substrate-binding protein 4316207..4317205 Pseudomonas putida GB-1 5871664 YP_001670097.1 CDS PputGB1_3871 NC_010322.1 4317351 4319375 D PFAM: MscS Mechanosensitive ion channel; KEGG: pfo:Pfl_5033 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4317351..4319375 Pseudomonas putida GB-1 5871665 YP_001670098.1 CDS PputGB1_3872 NC_010322.1 4319434 4320360 R KEGG: pen:PSEEN1664 hypothetical protein; hypothetical protein complement(4319434..4320360) Pseudomonas putida GB-1 5871666 YP_001670099.1 CDS PputGB1_3873 NC_010322.1 4320396 4321292 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1663 hypothetical protein; hypothetical protein complement(4320396..4321292) Pseudomonas putida GB-1 5871667 YP_001670100.1 CDS PputGB1_3874 NC_010322.1 4321426 4321863 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1662 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4321426..4321863 Pseudomonas putida GB-1 5871668 YP_001670101.1 CDS PputGB1_3875 NC_010322.1 4322361 4323893 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN1660 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4322361..4323893 Pseudomonas putida GB-1 5871669 YP_001670102.1 CDS PputGB1_3876 NC_010322.1 4323910 4324638 D PFAM: Asp/Glu/hydantoin racemase; KEGG: pen:PSEEN1659 hydantoin racemase; Asp/Glu/hydantoin racemase 4323910..4324638 Pseudomonas putida GB-1 5871670 YP_001670103.1 CDS PputGB1_3877 NC_010322.1 4324694 4325890 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1658 D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase complement(4324694..4325890) Pseudomonas putida GB-1 5871671 YP_001670104.1 CDS PputGB1_3878 NC_010322.1 4325935 4326597 R KEGG: pen:PSEEN1657 hypothetical protein; hypothetical protein complement(4325935..4326597) Pseudomonas putida GB-1 5871672 YP_001670105.1 CDS PputGB1_3879 NC_010322.1 4326830 4327168 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1656 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(4326830..4327168) Pseudomonas putida GB-1 5871673 YP_001670106.1 CDS PputGB1_3880 NC_010322.1 4327207 4328148 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A1705 putative 10 TMS drug/metabolite exporter, DME family, DMT super family; hypothetical protein complement(4327207..4328148) Pseudomonas putida GB-1 5871674 YP_001670107.1 CDS PputGB1_3881 NC_010322.1 4328304 4329197 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5201 transcriptional regulator, LysR family; LysR family transcriptional regulator 4328304..4329197 Pseudomonas putida GB-1 5871675 YP_001670108.1 CDS PputGB1_3882 NC_010322.1 4329199 4329606 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN1655 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(4329199..4329606) Pseudomonas putida GB-1 5871676 YP_001670109.1 CDS PputGB1_3883 NC_010322.1 4329683 4330471 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pen:PSEEN3771 phenazine biosynthesis protein, PhzC/F family; PhzF family phenazine biosynthesis protein complement(4329683..4330471) Pseudomonas putida GB-1 5871677 YP_001670110.1 CDS PputGB1_3884 NC_010322.1 4330522 4331460 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN3772 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(4330522..4331460) Pseudomonas putida GB-1 5871678 YP_001670111.1 CDS PputGB1_3885 NC_010322.1 4331780 4332679 D KEGG: pfo:Pfl_2415 hypothetical protein; hypothetical protein 4331780..4332679 Pseudomonas putida GB-1 5871679 YP_001670112.1 CDS PputGB1_3886 NC_010322.1 4332841 4333770 D KEGG: pfo:Pfl_2415 hypothetical protein; hypothetical protein 4332841..4333770 Pseudomonas putida GB-1 5871680 YP_001670113.1 CDS PputGB1_3887 NC_010322.1 4333856 4334272 R KEGG: pen:PSEEN3773 hypothetical protein; hypothetical protein complement(4333856..4334272) Pseudomonas putida GB-1 5871681 YP_001670114.1 CDS PputGB1_3888 NC_010322.1 4334285 4335481 R KEGG: pen:PSEEN3774 cytochrome c-type biogenesis protein CycH; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; cytochrome c-type biogenesis protein CcmI complement(4334285..4335481) Pseudomonas putida GB-1 5871682 YP_001670115.1 CDS PputGB1_3889 NC_010322.1 4335474 4335950 R PFAM: cytochrome C biogenesis protein; KEGG: pen:PSEEN3775 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein complement(4335474..4335950) Pseudomonas putida GB-1 5871683 YP_001670116.1 CDS PputGB1_3890 NC_010322.1 4335947 4336483 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN3776 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(4335947..4336483) Pseudomonas putida GB-1 5871684 YP_001670117.1 CDS PputGB1_3891 NC_010322.1 4336480 4338468 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3777 periplasmic cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(4336480..4338468) Pseudomonas putida GB-1 5871685 YP_001670118.1 CDS PputGB1_3892 NC_010322.1 4338465 4338920 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(4338465..4338920) Pseudomonas putida GB-1 5871686 YP_001670119.1 CDS PputGB1_3893 NC_010322.1 4338917 4339093 R TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: pen:PSEEN3779 cytochrome c-type biogenesis protein CcmD; heme exporter protein CcmD complement(4338917..4339093) Pseudomonas putida GB-1 5871687 YP_001670120.1 CDS PputGB1_3894 NC_010322.1 4339090 4339857 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3780 cytochrome c-type biogenesis protein CcmC; heme ABC export system, permease protein; heme exporter protein CcmC complement(4339090..4339857) Pseudomonas putida GB-1 5871688 YP_001670121.1 CDS PputGB1_3895 NC_010322.1 4339904 4340572 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pen:PSEEN3781 heme ABC export system, permease protein CcmB; heme exporter protein CcmB complement(4339904..4340572) Pseudomonas putida GB-1 5871689 YP_001670122.1 CDS PputGB1_3896 NC_010322.1 4340569 4341201 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(4340569..4341201) Pseudomonas putida GB-1 5871690 YP_001670123.1 CDS PputGB1_3897 NC_010322.1 4341370 4342926 D KEGG: pen:PSEEN3783 hypothetical protein; hypothetical protein 4341370..4342926 Pseudomonas putida GB-1 5871691 YP_001670124.1 CDS PputGB1_3898 NC_010322.1 4342923 4343261 D KEGG: pen:PSEEN3784 hypothetical protein; hypothetical protein 4342923..4343261 Pseudomonas putida GB-1 5871692 YP_001670125.1 CDS PputGB1_3899 NC_010322.1 4343343 4346096 D KEGG: pen:PSEEN3785 hypothetical protein; hypothetical protein 4343343..4346096 Pseudomonas putida GB-1 5871693 YP_001670126.1 CDS PputGB1_3900 NC_010322.1 4346152 4346547 R KEGG: pen:PSEEN3786 hypothetical protein; hypothetical protein complement(4346152..4346547) Pseudomonas putida GB-1 5871694 YP_001670127.1 CDS PputGB1_3901 NC_010322.1 4346549 4347028 R PFAM: CheW domain protein; KEGG: pen:PSEEN3787 purine-binding chemotaxis protein CheW; CheW protein complement(4346549..4347028) Pseudomonas putida GB-1 5871695 YP_001670128.1 CDS PputGB1_3902 NC_010322.1 4347070 4347960 R PFAM: CheW domain protein; KEGG: pen:PSEEN3788 hypothetical protein; CheW protein complement(4347070..4347960) Pseudomonas putida GB-1 5871696 YP_001670129.1 CDS PputGB1_3903 NC_010322.1 4347960 4348748 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3789 ATPase, ParA family protein; cobyrinic acid ac-diamide synthase complement(4347960..4348748) Pseudomonas putida GB-1 5871697 YP_001670130.1 CDS PputGB1_3904 NC_010322.1 4348849 4349706 R Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD complement(4348849..4349706) Pseudomonas putida GB-1 5871698 YP_001670131.1 CDS motC NC_010322.1 4349709 4350449 R homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein complement(4349709..4350449) Pseudomonas putida GB-1 5871699 YP_001670132.1 CDS PputGB1_3906 NC_010322.1 4350449 4351579 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4350449..4351579) Pseudomonas putida GB-1 5871700 YP_001670133.1 CDS PputGB1_3907 NC_010322.1 4351626 4353857 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: pen:PSEEN3793 chemotaxis histidine kinase CheA; CheA signal transduction histidine kinase complement(4351626..4353857) Pseudomonas putida GB-1 5871701 YP_001670134.1 CDS PputGB1_3908 NC_010322.1 4353870 4354658 R PFAM: Chemotaxis phosphatase CheZ; KEGG: pen:PSEEN3794 chemotactic response, CheY protein phophatase; chemotaxis phosphatase, CheZ complement(4353870..4354658) Pseudomonas putida GB-1 5871702 YP_001670135.1 CDS PputGB1_3909 NC_010322.1 4354679 4355065 R PFAM: response regulator receiver; KEGG: pen:PSEEN3795 chemotaxis protein CheY; response regulator receiver protein complement(4354679..4355065) Pseudomonas putida GB-1 5871703 YP_001670136.1 CDS fliA NC_010322.1 4355161 4355901 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(4355161..4355901) Pseudomonas putida GB-1 5871704 YP_001670137.1 CDS PputGB1_3911 NC_010322.1 4355898 4356731 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3797 flagellar number regulator FleN; cobyrinic acid ac-diamide synthase complement(4355898..4356731) Pseudomonas putida GB-1 5871705 YP_001670138.1 CDS flhF NC_010322.1 4356825 4358132 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(4356825..4358132) Pseudomonas putida GB-1 5871706 YP_001670139.1 CDS flhA NC_010322.1 4358144 4360273 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(4358144..4360273) Pseudomonas putida GB-1 5871707 YP_001670140.1 CDS flhB NC_010322.1 4360415 4361557 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4360415..4361557) Pseudomonas putida GB-1 5871708 YP_001670141.1 CDS fliR NC_010322.1 4361560 4362336 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(4361560..4362336) Pseudomonas putida GB-1 5871709 YP_001670142.1 CDS fliQ NC_010322.1 4362344 4362613 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(4362344..4362613) Pseudomonas putida GB-1 5871710 YP_001670143.1 CDS fliP NC_010322.1 4362635 4363390 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(4362635..4363390) Pseudomonas putida GB-1 5871711 YP_001670144.1 CDS PputGB1_3918 NC_010322.1 4363390 4363824 R PFAM: flagellar biosynthesis protein FliO; KEGG: pen:PSEEN3804 flagellar assembly protein FliO; flagellar biosynthesis protein FliO complement(4363390..4363824) Pseudomonas putida GB-1 5871712 YP_001670145.1 CDS fliN NC_010322.1 4363837 4364301 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(4363837..4364301) Pseudomonas putida GB-1 5871713 YP_001670146.1 CDS fliM NC_010322.1 4364349 4365317 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(4364349..4365317) Pseudomonas putida GB-1 5871714 YP_001670147.1 CDS fliL NC_010322.1 4365327 4365824 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(4365327..4365824) Pseudomonas putida GB-1 5871715 YP_001670148.1 CDS PputGB1_3922 NC_010322.1 4365976 4367241 R PFAM: flagellar hook-length control protein; KEGG: pen:PSEEN3808 flagellar hook-length control protein FliK; flagellar hook-length control protein complement(4365976..4367241) Pseudomonas putida GB-1 5871716 YP_001670149.1 CDS PputGB1_3923 NC_010322.1 4367314 4367661 R PFAM: Hpt domain protein; KEGG: pen:PSEEN3809 hypothetical protein; Hpt protein complement(4367314..4367661) Pseudomonas putida GB-1 5871717 YP_001670150.1 CDS PputGB1_3924 NC_010322.1 4367710 4369401 R PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3810 sensor histidine kinase/response regulator (hybrid); response regulator receiver protein complement(4367710..4369401) Pseudomonas putida GB-1 5871718 YP_001670151.1 CDS PputGB1_3925 NC_010322.1 4369410 4369715 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3811 anti-sigma F factor antagonist; anti-sigma-factor antagonist complement(4369410..4369715) Pseudomonas putida GB-1 5871719 YP_001670152.1 CDS fliJ NC_010322.1 4369830 4370282 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(4369830..4370282) Pseudomonas putida GB-1 5871720 YP_001670153.1 CDS fliI NC_010322.1 4370289 4371644 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(4370289..4371644) Pseudomonas putida GB-1 5871721 YP_001670154.1 CDS fliH NC_010322.1 4371634 4372416 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(4371634..4372416) Pseudomonas putida GB-1 5871722 YP_001670155.1 CDS fliG NC_010322.1 4372453 4373472 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(4372453..4373472) Pseudomonas putida GB-1 5871723 YP_001670156.1 CDS fliF NC_010322.1 4373465 4375243 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(4373465..4375243) Pseudomonas putida GB-1 5871724 YP_001670157.1 CDS fliE NC_010322.1 4375259 4375591 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(4375259..4375591) Pseudomonas putida GB-1 5871725 YP_001670158.1 CDS PputGB1_3932 NC_010322.1 4375679 4377034 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN3818 response regulator FleR; Fis family two component sigma-54 specific transcriptional regulator complement(4375679..4377034) Pseudomonas putida GB-1 5871726 YP_001670159.1 CDS PputGB1_3933 NC_010322.1 4377034 4378251 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pen:PSEEN3819 sensory box histidine kinase FleS; PAS/PAC sensor signal transduction histidine kinase complement(4377034..4378251) Pseudomonas putida GB-1 5871727 YP_001670160.1 CDS PputGB1_3934 NC_010322.1 4378461 4379936 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3820 transcriptional regulator FleQ; sigma-54 dependent trancsriptional regulator complement(4378461..4379936) Pseudomonas putida GB-1 5871728 YP_001670161.1 CDS PputGB1_3935 NC_010322.1 4380105 4380434 R KEGG: psp:PSPPH_3388 motility-related protein FliT; hypothetical protein complement(4380105..4380434) Pseudomonas putida GB-1 5871729 YP_001670162.1 CDS fliS NC_010322.1 4380415 4380816 R flagellin specific chaperone; flagellar protein FliS complement(4380415..4380816) Pseudomonas putida GB-1 5871730 YP_001670163.1 CDS PputGB1_3937 NC_010322.1 4380944 4382335 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: psa:PST_1406 flagellar cap protein FliD; flagellar hook-associated 2 domain-containing protein complement(4380944..4382335) Pseudomonas putida GB-1 5871731 YP_001670164.1 CDS PputGB1_3938 NC_010322.1 4382416 4382772 R PFAM: flagellar protein FlaG protein; KEGG: pfl:PFL_1630 flagellin FlaG; flagellar protein FlaG protein complement(4382416..4382772) Pseudomonas putida GB-1 5871732 YP_001670165.1 CDS PputGB1_3939 NC_010322.1 4382849 4384300 R PFAM: flagellin domain protein; flagellin hook IN repeat protein; KEGG: psa:PST_1404 flagellin type B; flagellin domain-containing protein complement(4382849..4384300) Pseudomonas putida GB-1 5871733 YP_001670166.1 CDS PputGB1_3940 NC_010322.1 4384689 4385618 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: pfo:Pfl_1524 3-oxoacyl-(acyl-carrier-protein) synthase III, putative; beta-ketoacyl-acyl-carrier-protein synthase I complement(4384689..4385618) Pseudomonas putida GB-1 5871734 YP_001670167.1 CDS flgL NC_010322.1 4385906 4387468 R With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(4385906..4387468) Pseudomonas putida GB-1 5871735 YP_001670168.1 CDS flgK NC_010322.1 4387482 4389524 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(4387482..4389524) Pseudomonas putida GB-1 5871736 YP_001670169.1 CDS flgJ NC_010322.1 4389537 4390691 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(4389537..4390691) Pseudomonas putida GB-1 5871737 YP_001670170.1 CDS flgI NC_010322.1 4390703 4391818 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(4390703..4391818) Pseudomonas putida GB-1 5871738 YP_001670171.1 CDS flgH NC_010322.1 4391825 4392520 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(4391825..4392520) Pseudomonas putida GB-1 5871739 YP_001670172.1 CDS flgG NC_010322.1 4392557 4393342 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(4392557..4393342) Pseudomonas putida GB-1 5871740 YP_001670173.1 CDS flgF NC_010322.1 4393390 4394130 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(4393390..4394130) Pseudomonas putida GB-1 5871741 YP_001670174.1 CDS PputGB1_3948 NC_010322.1 4394291 4394461 R KEGG: pmy:Pmen_1706 hypothetical protein; hypothetical protein complement(4394291..4394461) Pseudomonas putida GB-1 5871742 YP_001670175.1 CDS flgE NC_010322.1 4394632 4395954 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(4394632..4395954) Pseudomonas putida GB-1 5871743 YP_001670176.1 CDS flgD NC_010322.1 4395983 4396684 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(4395983..4396684) Pseudomonas putida GB-1 5871744 YP_001670177.1 CDS flgC NC_010322.1 4396697 4397140 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(4396697..4397140) Pseudomonas putida GB-1 5871745 YP_001670178.1 CDS flgB NC_010322.1 4397143 4397553 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(4397143..4397553) Pseudomonas putida GB-1 5871746 YP_001670179.1 CDS PputGB1_3953 NC_010322.1 4397826 4398653 R PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3844 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR complement(4397826..4398653) Pseudomonas putida GB-1 5871747 YP_001670180.1 CDS PputGB1_3954 NC_010322.1 4398703 4399632 R PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3845 chemotaxis protein CheV; response regulator receiver modulated CheW protein complement(4398703..4399632) Pseudomonas putida GB-1 5871748 YP_001670181.1 CDS flgA NC_010322.1 4399710 4400462 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4399710..4400462 Pseudomonas putida GB-1 5871749 YP_001670182.1 CDS PputGB1_3956 NC_010322.1 4400627 4400941 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pen:PSEEN3847 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 4400627..4400941 Pseudomonas putida GB-1 5871750 YP_001670183.1 CDS PputGB1_3957 NC_010322.1 4400991 4401458 D PFAM: FlgN family protein; KEGG: pen:PSEEN3848 flagella synthesis protein FlgN; FlgN family protein 4400991..4401458 Pseudomonas putida GB-1 5871751 YP_001670184.1 CDS PputGB1_3958 NC_010322.1 4401538 4402281 D PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3849 hypothetical protein; type IV pilus assembly PilZ 4401538..4402281 Pseudomonas putida GB-1 5871752 YP_001670185.1 CDS PputGB1_3959 NC_010322.1 4402387 4403730 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3850 major facilitator family transporter; major facilitator superfamily transporter complement(4402387..4403730) Pseudomonas putida GB-1 5871753 YP_001670186.1 CDS PputGB1_3960 NC_010322.1 4403859 4405181 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3851 glutamine synthetase; glutamate--putrescine ligase complement(4403859..4405181) Pseudomonas putida GB-1 5871754 YP_001670187.1 CDS PputGB1_3961 NC_010322.1 4405272 4405757 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3852 transcriptional regulator BkdR; AsnC family transcriptional regulator complement(4405272..4405757) Pseudomonas putida GB-1 5871755 YP_001670188.1 CDS PputGB1_3962 NC_010322.1 4405956 4407188 D PFAM: dehydrogenase E1 component; KEGG: pen:PSEEN3853 2-oxoisovalerate dehydrogenase, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 4405956..4407188 Pseudomonas putida GB-1 5871756 YP_001670189.1 CDS PputGB1_3963 NC_010322.1 4407190 4408248 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: pen:PSEEN3854 2-oxoisovalerate dehydrogenase, beta subunit; transketolase central region 4407190..4408248 Pseudomonas putida GB-1 5871757 YP_001670190.1 CDS PputGB1_3964 NC_010322.1 4408249 4409520 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pen:PSEEN3855 2-oxoisovalerate dehydrogenase, lipoamide acyltransferase component; branched-chain alpha-keto acid dehydrogenase subunit E2 4408249..4409520 Pseudomonas putida GB-1 5871758 YP_001670191.1 CDS PputGB1_3965 NC_010322.1 4409523 4410902 D E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4409523..4410902 Pseudomonas putida GB-1 5871759 YP_001670192.1 CDS PputGB1_3966 NC_010322.1 4410981 4411979 R KEGG: asa:ASA_4012 GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(4410981..4411979) Pseudomonas putida GB-1 5871760 YP_001670193.1 CDS PputGB1_3967 NC_010322.1 4412196 4412711 D KEGG: pen:PSEEN3857 hypothetical protein; hypothetical protein 4412196..4412711 Pseudomonas putida GB-1 5871761 YP_001670194.1 CDS PputGB1_3968 NC_010322.1 4412835 4413455 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pae:PA1269 probable transcriptional regulator; GntR family transcriptional regulator 4412835..4413455 Pseudomonas putida GB-1 5871762 YP_001670195.1 CDS PputGB1_3969 NC_010322.1 4413620 4414993 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bam:Bamb_6108 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4413620..4414993 Pseudomonas putida GB-1 5871763 YP_001670196.1 CDS PputGB1_3970 NC_010322.1 4415030 4415974 D PFAM: dihydrodipicolinate synthetase; KEGG: pen:PSEEN4051 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 4415030..4415974 Pseudomonas putida GB-1 5871764 YP_001670197.1 CDS PputGB1_3971 NC_010322.1 4416324 4417058 D PFAM: AzlC family protein; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC; AzlC family protein 4416324..4417058 Pseudomonas putida GB-1 5871765 YP_001670198.1 CDS PputGB1_3972 NC_010322.1 4417055 4417381 D PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport; branched-chain amino acid transport 4417055..4417381 Pseudomonas putida GB-1 5871766 YP_001670199.1 CDS PputGB1_3973 NC_010322.1 4417563 4418930 D PFAM: amino acid permease-associated region; KEGG: bch:Bcen2424_4907 amino acid permease-associated region; amino acid permease-associated protein 4417563..4418930 Pseudomonas putida GB-1 5871767 YP_001670200.1 CDS PputGB1_3974 NC_010322.1 4419213 4419806 R TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: pen:PSEEN3864 ATP-binding protein PhnN; phosphonate metabolism protein/1,5-bisphosphokinase PhnN complement(4419213..4419806) Pseudomonas putida GB-1 5871769 YP_001670201.1 CDS PputGB1_3975 NC_010322.1 4420153 4420479 D PFAM: Arc domain protein DNA binding domain protein; KEGG: pen:PSEEN3868 alginate biosynthesis transcriptional activator; Arc domain-containing protein 4420153..4420479 Pseudomonas putida GB-1 5871770 YP_001670202.1 CDS PputGB1_3976 NC_010322.1 4420586 4422028 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pen:PSEEN3870 magnesium transporter; magnesium transporter complement(4420586..4422028) Pseudomonas putida GB-1 5871771 YP_001670203.1 CDS PputGB1_3977 NC_010322.1 4423220 4423408 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(4423220..4423408) Pseudomonas putida GB-1 5871777 YP_001670204.1 CDS PputGB1_3978 NC_010322.1 4423576 4424811 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(4423576..4424811) Pseudomonas putida GB-1 5871778 YP_001670205.1 CDS alaS NC_010322.1 4424896 4427589 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(4424896..4427589) Pseudomonas putida GB-1 5871779 YP_001670206.1 CDS PputGB1_3980 NC_010322.1 4427837 4428844 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(4427837..4428844) Pseudomonas putida GB-1 5871780 YP_001670207.1 CDS PputGB1_3981 NC_010322.1 4428855 4429145 R KEGG: pen:PSEEN3877 hypothetical protein; hypothetical protein complement(4428855..4429145) Pseudomonas putida GB-1 5871781 YP_001670208.1 CDS PputGB1_3982 NC_010322.1 4429160 4430509 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(4429160..4430509) Pseudomonas putida GB-1 5871782 YP_001670209.1 CDS astD NC_010322.1 4430533 4431996 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(4430533..4431996) Pseudomonas putida GB-1 5871783 YP_001670210.1 CDS PputGB1_3984 NC_010322.1 4431997 4433025 R KEGG: pen:PSEEN3880 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase complement(4431997..4433025) Pseudomonas putida GB-1 5871784 YP_001670211.1 CDS PputGB1_3985 NC_010322.1 4433104 4434123 R KEGG: pen:PSEEN3881 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit; arginine/ornithine succinyltransferase subunit alpha complement(4433104..4434123) Pseudomonas putida GB-1 5871785 YP_001670212.1 CDS argD NC_010322.1 4434259 4435479 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4434259..4435479) Pseudomonas putida GB-1 5871786 YP_001670213.1 CDS PputGB1_3987 NC_010322.1 4435787 4436767 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3883 transcriptional regulator ArgR, AraC family; AraC family transcriptional regulator complement(4435787..4436767) Pseudomonas putida GB-1 5871787 YP_001670214.1 CDS PputGB1_3988 NC_010322.1 4436866 4437630 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3884 arginine/ornithine transport ATP-binding protein AotP; ABC transporter-like protein complement(4436866..4437630) Pseudomonas putida GB-1 5871788 YP_001670215.1 CDS PputGB1_3989 NC_010322.1 4437653 4438351 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3885 arginine/ornithine transport membrane protein AotM; polar amino acid ABC transporter inner membrane subunit complement(4437653..4438351) Pseudomonas putida GB-1 5871789 YP_001670216.1 CDS PputGB1_3990 NC_010322.1 4438348 4439037 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3886 arginine/ornithine transport protein AotQ (membrane); polar amino acid ABC transporter inner membrane subunit complement(4438348..4439037) Pseudomonas putida GB-1 5871790 YP_001670217.1 CDS PputGB1_3991 NC_010322.1 4439126 4439911 R TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3887 arginine/ornithine periplasmic-binding protein AotJ; cationic amino acid ABC transporter periplasmic binding protein complement(4439126..4439911) Pseudomonas putida GB-1 5871791 YP_001670218.1 CDS PputGB1_3992 NC_010322.1 4440426 4442387 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4440426..4442387) Pseudomonas putida GB-1 5871792 YP_001670219.1 CDS PputGB1_3993 NC_010322.1 4442786 4443040 D KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein 4442786..4443040 Pseudomonas putida GB-1 5871793 YP_001670220.1 CDS PputGB1_3994 NC_010322.1 4443194 4444753 R PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN3891 phenylalanine hydroxylase gene cluster transcription activator; transcriptional regulator TyrR complement(4443194..4444753) Pseudomonas putida GB-1 5871794 YP_001670221.1 CDS phhA NC_010322.1 4445010 4445798 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 4445010..4445798 Pseudomonas putida GB-1 5871795 YP_001670222.1 CDS phhB NC_010322.1 4445838 4446194 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 4445838..4446194 Pseudomonas putida GB-1 5871796 YP_001670223.1 CDS PputGB1_3997 NC_010322.1 4446374 4447207 D KEGG: pen:PSEEN3441 protein-tyrosine phosphatase; autotransporter; protein tyrosine/serine phosphatase 4446374..4447207 Pseudomonas putida GB-1 5871797 YP_001670224.1 CDS PputGB1_3998 NC_010322.1 4447604 4448791 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3896 transport protein (MFS family); major facilitator superfamily transporter 4447604..4448791 Pseudomonas putida GB-1 5871798 YP_001670225.1 CDS PputGB1_3999 NC_010322.1 4448829 4451849 R PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3897 oxidase, FAD-binding; FAD linked oxidase domain-containing protein complement(4448829..4451849) Pseudomonas putida GB-1 5871799 YP_001670226.1 CDS PputGB1_4000 NC_010322.1 4452002 4452886 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3898 transcriptional regulator, LysR family; LysR family transcriptional regulator 4452002..4452886 Pseudomonas putida GB-1 5871800 YP_001670227.1 CDS PputGB1_4001 NC_010322.1 4452955 4454358 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3899 aromatic amino acid transporter (APC family); amino acid permease-associated protein complement(4452955..4454358) Pseudomonas putida GB-1 5871801 YP_001670228.1 CDS PputGB1_4002 NC_010322.1 4455020 4456087 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN3900 ribosomal large subunit pseudouridine synthase B; RNA-binding S4 domain-containing protein complement(4455020..4456087) Pseudomonas putida GB-1 5871802 YP_001670229.1 CDS PputGB1_4003 NC_010322.1 4456361 4457131 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pen:PSEEN3901 hypothetical protein; segregation and condensation protein B complement(4456361..4457131) Pseudomonas putida GB-1 5871803 YP_001670230.1 CDS PputGB1_4004 NC_010322.1 4457118 4457963 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: pen:PSEEN3902 hypothetical protein; chromosome segregation and condensation protein ScpA complement(4457118..4457963) Pseudomonas putida GB-1 5871804 YP_001670231.1 CDS PputGB1_4005 NC_010322.1 4457969 4458634 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN3903 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein complement(4457969..4458634) Pseudomonas putida GB-1 5871805 YP_001670232.1 CDS PputGB1_4006 NC_010322.1 4458612 4459472 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pen:PSEEN3904 phosphoesterase (PHP family); phosphotransferase domain-containing protein complement(4458612..4459472) Pseudomonas putida GB-1 5871806 YP_001670233.1 CDS PputGB1_4007 NC_010322.1 4459540 4460133 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 4459540..4460133 Pseudomonas putida GB-1 5871807 YP_001670234.1 CDS PputGB1_4008 NC_010322.1 4460135 4460434 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 4460135..4460434 Pseudomonas putida GB-1 5871808 YP_001670235.1 CDS PputGB1_4009 NC_010322.1 4460577 4461254 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3908 two-component response regulator; two component transcriptional regulator 4460577..4461254 Pseudomonas putida GB-1 5871809 YP_001670236.1 CDS PputGB1_4010 NC_010322.1 4461356 4461772 D PFAM: protein of unknown function Spy-related; KEGG: pen:PSEEN3909 hypothetical protein; hypothetical protein 4461356..4461772 Pseudomonas putida GB-1 5871810 YP_001670237.1 CDS PputGB1_4011 NC_010322.1 4461831 4463171 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3910 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4461831..4463171 Pseudomonas putida GB-1 5871811 YP_001670238.1 CDS PputGB1_4012 NC_010322.1 4463257 4463814 R PFAM: nitroreductase; KEGG: pen:PSEEN3911 nitroreductase; nitroreductase complement(4463257..4463814) Pseudomonas putida GB-1 5871812 YP_001670239.1 CDS PputGB1_4013 NC_010322.1 4463917 4465371 D PFAM: cation transporter; KEGG: pen:PSEEN3912 potassium uptake protein, TrkH family; cation transporter 4463917..4465371 Pseudomonas putida GB-1 5871813 YP_001670240.1 CDS PputGB1_4014 NC_010322.1 4465328 4466389 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3913 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4465328..4466389) Pseudomonas putida GB-1 5871814 YP_001670241.1 CDS PputGB1_4015 NC_010322.1 4466543 4466854 D KEGG: pen:PSEEN3914 hypothetical protein; hypothetical protein 4466543..4466854 Pseudomonas putida GB-1 5871815 YP_001670242.1 CDS PputGB1_4016 NC_010322.1 4466908 4467720 R PFAM: metallophosphoesterase; KEGG: pen:PSEEN3916 metallo-dependent phosphoesterase; metallophosphoesterase complement(4466908..4467720) Pseudomonas putida GB-1 5871816 YP_001670243.1 CDS PputGB1_4017 NC_010322.1 4467848 4468615 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3917 transcriptional regulator, AraC family; AraC family transcriptional regulator 4467848..4468615 Pseudomonas putida GB-1 5871817 YP_001670244.1 CDS PputGB1_4018 NC_010322.1 4468716 4469606 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3918 hypothetical protein; hypothetical protein 4468716..4469606 Pseudomonas putida GB-1 5871818 YP_001670245.1 CDS PputGB1_4019 NC_010322.1 4469607 4469888 R TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: pen:PSEEN3919 hypothetical protein; hypothetical protein complement(4469607..4469888) Pseudomonas putida GB-1 5871819 YP_001670246.1 CDS PputGB1_4020 NC_010322.1 4469956 4472142 D PFAM: Patatin; surface antigen variable number repeat protein; KEGG: pen:PSEEN3920 hypothetical protein; patatin 4469956..4472142 Pseudomonas putida GB-1 5871820 YP_001670247.1 CDS PputGB1_4021 NC_010322.1 4472176 4472613 R PFAM: regulatory protein MarR; KEGG: pen:PSEEN3921 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4472176..4472613) Pseudomonas putida GB-1 5871821 YP_001670248.1 CDS PputGB1_4022 NC_010322.1 4472764 4474911 R KEGG: pen:PSEEN3922 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(4472764..4474911) Pseudomonas putida GB-1 5871822 YP_001670249.1 CDS PputGB1_4023 NC_010322.1 4475158 4475745 D TIGRFAM: yecA family protein; KEGG: pen:PSEEN3923 hypothetical protein; yecA family protein 4475158..4475745 Pseudomonas putida GB-1 5871823 YP_001670250.1 CDS PputGB1_4024 NC_010322.1 4475753 4476118 D PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN3924 hypothetical protein; hypothetical protein 4475753..4476118 Pseudomonas putida GB-1 5871824 YP_001670251.1 CDS PputGB1_4025 NC_010322.1 4476430 4477788 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3927 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 4476430..4477788 Pseudomonas putida GB-1 5871825 YP_001670252.1 CDS PputGB1_4026 NC_010322.1 4477831 4478430 R PFAM: DTW domain containing protein; KEGG: pen:PSEEN3930 hypothetical protein; DTW domain-containing protein complement(4477831..4478430) Pseudomonas putida GB-1 5871826 YP_001670253.1 CDS PputGB1_4027 NC_010322.1 4478495 4480060 R KEGG: pen:PSEEN3931 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(4478495..4480060) Pseudomonas putida GB-1 5871827 YP_001670254.1 CDS PputGB1_4028 NC_010322.1 4480198 4481091 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3932 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4480198..4481091) Pseudomonas putida GB-1 5871828 YP_001670255.1 CDS PputGB1_4029 NC_010322.1 4481305 4482267 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pen:PSEEN3933 agmatinase; agmatinase 4481305..4482267 Pseudomonas putida GB-1 5871829 YP_001670256.1 CDS PputGB1_4030 NC_010322.1 4482544 4483923 D PFAM: Na+/solute symporter; KEGG: pen:PSEEN3934 sodium-solute symporter; Na+/solute symporter 4482544..4483923 Pseudomonas putida GB-1 5871830 YP_001670257.1 CDS PputGB1_4031 NC_010322.1 4484010 4484138 R KEGG: pen:PSEEN3935 hypothetical protein; hypothetical protein complement(4484010..4484138) Pseudomonas putida GB-1 5871831 YP_001670258.1 CDS PputGB1_4032 NC_010322.1 4484263 4485156 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3936 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4484263..4485156) Pseudomonas putida GB-1 5871832 YP_001670259.1 CDS PputGB1_4033 NC_010322.1 4485263 4486423 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3937 hypothetical protein; hypothetical protein 4485263..4486423 Pseudomonas putida GB-1 5871833 YP_001670260.1 CDS PputGB1_4034 NC_010322.1 4486392 4487318 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3940 hypothetical protein; hypothetical protein complement(4486392..4487318) Pseudomonas putida GB-1 5871834 YP_001670261.1 CDS PputGB1_4035 NC_010322.1 4487424 4487819 R KEGG: pfl:PFL_1560 hypothetical protein; hypothetical protein complement(4487424..4487819) Pseudomonas putida GB-1 5871835 YP_001670262.1 CDS PputGB1_4036 NC_010322.1 4487996 4488298 D TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: pen:PSEEN3938 hypothetical protein; addiction module killer protein 4487996..4488298 Pseudomonas putida GB-1 5871836 YP_001670263.1 CDS PputGB1_4037 NC_010322.1 4488291 4488584 D TIGRFAM: addiction module antidote protein; KEGG: pen:PSEEN3939 hypothetical protein; putative transcriptional regulator 4488291..4488584 Pseudomonas putida GB-1 5871837 YP_001670264.1 CDS PputGB1_4038 NC_010322.1 4488674 4488946 D KEGG: pen:PSEEN3948 hypothetical protein; hypothetical protein 4488674..4488946 Pseudomonas putida GB-1 5871838 YP_001670265.1 CDS PputGB1_4039 NC_010322.1 4489072 4490433 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN3951 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(4489072..4490433) Pseudomonas putida GB-1 5871839 YP_001670266.1 CDS PputGB1_4040 NC_010322.1 4490537 4491838 D PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3952 transporter with mechanosensitive ion channel; mechanosensitive ion channel protein MscS 4490537..4491838 Pseudomonas putida GB-1 5871840 YP_001670267.1 CDS PputGB1_4041 NC_010322.1 4491855 4492268 R PFAM: Class I peptide chain release factor; KEGG: pen:PSEEN2056 protein chain release factor B; peptidyl-tRNA hydrolase domain-containing protein complement(4491855..4492268) Pseudomonas putida GB-1 5871841 YP_001670268.1 CDS PputGB1_4042 NC_010322.1 4492334 4493269 R PFAM: Auxin Efflux Carrier; KEGG: pmy:Pmen_0140 auxin efflux carrier; auxin efflux carrier complement(4492334..4493269) Pseudomonas putida GB-1 5871842 YP_001670269.1 CDS PputGB1_4043 NC_010322.1 4493271 4494146 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3958 transport protein; carboxylate/amino acid/amine transporter complement(4493271..4494146) Pseudomonas putida GB-1 5871843 YP_001670270.1 CDS PputGB1_4044 NC_010322.1 4494331 4494930 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN3959 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(4494331..4494930) Pseudomonas putida GB-1 5871844 YP_001670271.1 CDS PputGB1_4045 NC_010322.1 4495031 4495354 R KEGG: pen:PSEEN3960 hypothetical protein; hypothetical protein complement(4495031..4495354) Pseudomonas putida GB-1 5871845 YP_001670272.1 CDS PputGB1_4046 NC_010322.1 4495403 4496326 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3961 transcriptional regulator, LysR family; LysR family transcriptional regulator 4495403..4496326 Pseudomonas putida GB-1 5871846 YP_001670273.1 CDS PputGB1_4047 NC_010322.1 4496340 4497152 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3962 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4496340..4497152 Pseudomonas putida GB-1 5871847 YP_001670274.1 CDS PputGB1_4048 NC_010322.1 4497146 4497703 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN3963 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 4497146..4497703 Pseudomonas putida GB-1 5871848 YP_001670275.1 CDS PputGB1_4049 NC_010322.1 4497767 4499599 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3964 ABC transporter, ATP-binding protein/permease protein; ABC transporter-like protein 4497767..4499599 Pseudomonas putida GB-1 5871849 YP_001670276.1 CDS PputGB1_4050 NC_010322.1 4499633 4500760 R PFAM: protein of unknown function DUF482; KEGG: pen:PSEEN3965 hypothetical protein; hypothetical protein complement(4499633..4500760) Pseudomonas putida GB-1 5871850 YP_001670277.1 CDS PputGB1_4051 NC_010322.1 4501023 4502267 D KEGG: pen:PSEEN3966 hypothetical protein; hypothetical protein 4501023..4502267 Pseudomonas putida GB-1 5871851 YP_001670278.1 CDS PputGB1_4052 NC_010322.1 4502384 4503505 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(4502384..4503505) Pseudomonas putida GB-1 5871852 YP_001670279.1 CDS PputGB1_4053 NC_010322.1 4503742 4507647 R KEGG: pen:PSEEN3969 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(4503742..4507647) Pseudomonas putida GB-1 5871853 YP_001670280.1 CDS PputGB1_4054 NC_010322.1 4508142 4509506 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3971 glutamine synthetase; glutamine synthetase 4508142..4509506 Pseudomonas putida GB-1 5871854 YP_001670281.1 CDS PputGB1_4055 NC_010322.1 4509531 4510838 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3972 oxidoreductase; FAD dependent oxidoreductase 4509531..4510838 Pseudomonas putida GB-1 5871855 YP_001670282.1 CDS PputGB1_4056 NC_010322.1 4510918 4512615 R activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase complement(4510918..4512615) Pseudomonas putida GB-1 5871856 YP_001670283.1 CDS PputGB1_4057 NC_010322.1 4512948 4514636 R Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase complement(4512948..4514636) Pseudomonas putida GB-1 5871857 YP_001670284.1 CDS PputGB1_4058 NC_010322.1 4514855 4515799 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3976 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4514855..4515799 Pseudomonas putida GB-1 5871858 YP_001670285.1 CDS PputGB1_4059 NC_010322.1 4515834 4516304 D PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN3977 enoyl-CoA hydratase, R-specific; dehydratase 4515834..4516304 Pseudomonas putida GB-1 5871859 YP_001670286.1 CDS PputGB1_4060 NC_010322.1 4516369 4517607 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN3978 RNA polymerase sigma-70 factor, ECF subfamily; RNA polymerase ECF-subfamily sigma factor complement(4516369..4517607) Pseudomonas putida GB-1 5871860 YP_001670287.1 CDS PputGB1_4061 NC_010322.1 4517607 4518092 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pen:PSEEN3979 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(4517607..4518092) Pseudomonas putida GB-1 5871861 YP_001670288.1 CDS PputGB1_4062 NC_010322.1 4518114 4518458 R PFAM: DGPFAETKE family protein; KEGG: pen:PSEEN3980 hypothetical protein; DGPFAETKE family protein complement(4518114..4518458) Pseudomonas putida GB-1 5871862 YP_001670289.1 CDS PputGB1_4063 NC_010322.1 4518503 4518928 R KEGG: pen:PSEEN3981 hypothetical protein; hypothetical protein complement(4518503..4518928) Pseudomonas putida GB-1 5871863 YP_001670290.1 CDS PputGB1_4064 NC_010322.1 4519112 4519390 R KEGG: pen:PSEEN4001 hypothetical protein; hypothetical protein complement(4519112..4519390) Pseudomonas putida GB-1 5871864 YP_001670291.1 CDS PputGB1_4065 NC_010322.1 4519724 4520092 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4002 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4519724..4520092 Pseudomonas putida GB-1 5871865 YP_001670292.1 CDS PputGB1_4066 NC_010322.1 4520047 4520583 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(4520047..4520583) Pseudomonas putida GB-1 5871866 YP_001670293.1 CDS PputGB1_4067 NC_010322.1 4520580 4521539 R PFAM: ribonuclease BN; KEGG: pen:PSEEN4004 ribonuclease BN; ribonuclease BN complement(4520580..4521539) Pseudomonas putida GB-1 5871867 YP_001670294.1 CDS PputGB1_4068 NC_010322.1 4521696 4521875 R PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; CsbD family protein complement(4521696..4521875) Pseudomonas putida GB-1 5871868 YP_001670295.1 CDS PputGB1_4069 NC_010322.1 4522118 4523590 D SMART: Parallel beta-helix repeat; KEGG: aci:ACIAD1714 3-dehydroshikimate dehydratase (DHS dehydratase) (DHSase); parallel beta-helix repeat-containing protein 4522118..4523590 Pseudomonas putida GB-1 5871869 YP_001670296.1 CDS PputGB1_4070 NC_010322.1 4523719 4524099 D KEGG: pen:PSEEN4006 hypothetical protein; hypothetical protein 4523719..4524099 Pseudomonas putida GB-1 5871870 YP_001670297.1 CDS PputGB1_4071 NC_010322.1 4524100 4524936 R SMART: RNA binding S1 domain protein; KEGG: pen:PSEEN4007 hypothetical protein; RNA-binding S1 domain-containing protein complement(4524100..4524936) Pseudomonas putida GB-1 5871871 YP_001670298.1 CDS PputGB1_4072 NC_010322.1 4525043 4527496 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor complement(4525043..4527496) Pseudomonas putida GB-1 5871872 YP_001670299.1 CDS PputGB1_4073 NC_010322.1 4527615 4528556 R PFAM: FecR protein; KEGG: pen:PSEEN2530 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(4527615..4528556) Pseudomonas putida GB-1 5871873 YP_001670300.1 CDS PputGB1_4074 NC_010322.1 4528553 4529071 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ecw:EcE24377A_4870 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 factor complement(4528553..4529071) Pseudomonas putida GB-1 5871874 YP_001670301.1 CDS PputGB1_4075 NC_010322.1 4529219 4530088 D KEGG: pen:PSEEN4008 lipoprotein; lipoprotein 4529219..4530088 Pseudomonas putida GB-1 5871875 YP_001670302.1 CDS PputGB1_4076 NC_010322.1 4530215 4530571 D KEGG: yen:YE3851 hypothetical protein; hypothetical protein 4530215..4530571 Pseudomonas putida GB-1 5871876 YP_001670303.1 CDS aceK NC_010322.1 4530611 4532320 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(4530611..4532320) Pseudomonas putida GB-1 5871877 YP_001670304.1 CDS PputGB1_4078 NC_010322.1 4532410 4533363 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4010 hypothetical protein; hypothetical protein 4532410..4533363 Pseudomonas putida GB-1 5871878 YP_001670305.1 CDS PputGB1_4079 NC_010322.1 4533377 4533835 D KEGG: pfl:PFL_0005 hypothetical protein; hypothetical protein 4533377..4533835 Pseudomonas putida GB-1 5871879 YP_001670306.1 CDS PputGB1_4080 NC_010322.1 4533839 4534720 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4011 hypothetical protein; hypothetical protein complement(4533839..4534720) Pseudomonas putida GB-1 5871880 YP_001670307.1 CDS PputGB1_4081 NC_010322.1 4535163 4536023 D PFAM: protein of unknown function DUF323; KEGG: pfl:PFL_4089 lipoprotein, putative; hypothetical protein 4535163..4536023 Pseudomonas putida GB-1 5871881 YP_001670308.1 CDS PputGB1_4082 NC_010322.1 4536151 4538610 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_33680 ferripyoverdine receptor; TonB-dependent siderophore receptor 4536151..4538610 Pseudomonas putida GB-1 5871882 YP_001670309.1 CDS PputGB1_4083 NC_010322.1 4538849 4550677 R TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: pap:PSPA7_2859 linear gramicidin synthetase subunit D; amino acid adenylation domain-containing protein complement(4538849..4550677) Pseudomonas putida GB-1 5871883 YP_001670310.1 CDS PputGB1_4084 NC_010322.1 4550690 4554034 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfl:PFL_4094 non-ribosomal peptide synthetase; amino acid adenylation domain-containing protein complement(4550690..4554034) Pseudomonas putida GB-1 5871884 YP_001670311.1 CDS PputGB1_4085 NC_010322.1 4554036 4561856 R TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: psp:PSPPH_1926 pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser component; amino acid adenylation domain-containing protein complement(4554036..4561856) Pseudomonas putida GB-1 5871885 YP_001670312.1 CDS PputGB1_4086 NC_010322.1 4561858 4568325 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfl:PFL_4095 peptide synthase; amino acid adenylation domain-containing protein complement(4561858..4568325) Pseudomonas putida GB-1 5871886 YP_001670313.1 CDS PputGB1_4087 NC_010322.1 4568510 4569493 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: psb:Psyr_1956 pyoverdine biosynthesis regulatory gene, putative; taurine catabolism dioxygenase TauD/TfdA complement(4568510..4569493) Pseudomonas putida GB-1 5871887 YP_001670314.1 CDS PputGB1_4088 NC_010322.1 4569675 4570124 D TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pae:PA4922 azurin precursor; azurin 4569675..4570124 Pseudomonas putida GB-1 5871888 YP_001670315.1 CDS PputGB1_4089 NC_010322.1 4570161 4571813 D KEGG: pen:PSEEN3224 pyoverdine ABC export system, permease/ATP-binding protein; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 4570161..4571813 Pseudomonas putida GB-1 5871889 YP_001670316.1 CDS PputGB1_4090 NC_010322.1 4571956 4573116 D KEGG: pna:Pnap_4284 hypothetical protein; hypothetical protein 4571956..4573116 Pseudomonas putida GB-1 5871890 YP_001670317.1 CDS PputGB1_4091 NC_010322.1 4573170 4574105 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN4012 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase complement(4573170..4574105) Pseudomonas putida GB-1 5871891 YP_001670318.1 CDS PputGB1_4092 NC_010322.1 4574279 4575253 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN4013 cysteine synthase A; cysteine synthase A complement(4574279..4575253) Pseudomonas putida GB-1 5871892 YP_001670319.1 CDS PputGB1_4093 NC_010322.1 4575388 4576461 D KEGG: pfl:PFL_1518 hypothetical protein; hypothetical protein 4575388..4576461 Pseudomonas putida GB-1 5871893 YP_001670320.1 CDS PputGB1_4094 NC_010322.1 4576691 4577536 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4014 ATPase, AAA family; ATPase 4576691..4577536 Pseudomonas putida GB-1 5871894 YP_001670321.1 CDS PputGB1_4095 NC_010322.1 4577550 4578728 D KEGG: pen:PSEEN4015 hypothetical protein; hypothetical protein 4577550..4578728 Pseudomonas putida GB-1 5871895 YP_001670322.1 CDS PputGB1_4096 NC_010322.1 4578780 4579697 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: pen:PSEEN4016 allophanate hydrolase subunit 2; urea amidolyase-like protein complement(4578780..4579697) Pseudomonas putida GB-1 5871896 YP_001670323.1 CDS PputGB1_4097 NC_010322.1 4579694 4580380 R PFAM: Allophanate hydrolase subunit 1; KEGG: pen:PSEEN4017 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(4579694..4580380) Pseudomonas putida GB-1 5871897 YP_001670324.1 CDS PputGB1_4098 NC_010322.1 4580377 4581156 R PFAM: LamB/YcsF family protein; KEGG: pen:PSEEN4018 hypothetical protein; LamB/YcsF family protein complement(4580377..4581156) Pseudomonas putida GB-1 5871898 YP_001670325.1 CDS PputGB1_4099 NC_010322.1 4581166 4582452 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4019 transporter, MFS family; major facilitator superfamily transporter complement(4581166..4582452) Pseudomonas putida GB-1 5871899 YP_001670326.1 CDS PputGB1_4100 NC_010322.1 4582583 4583494 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 4582583..4583494 Pseudomonas putida GB-1 5871900 YP_001670327.1 CDS PputGB1_4101 NC_010322.1 4583704 4584225 D hypothetical protein 4583704..4584225 Pseudomonas putida GB-1 5871901 YP_001670328.1 CDS PputGB1_4102 NC_010322.1 4584401 4584922 R KEGG: pen:PSEEN4022 hypothetical protein; hypothetical protein complement(4584401..4584922) Pseudomonas putida GB-1 5871902 YP_001670329.1 CDS PputGB1_4103 NC_010322.1 4584932 4585705 R PFAM: glutamine amidotransferase class-II; KEGG: pen:PSEEN4023 glutamine amidotransferase, class II; glutamine amidotransferase complement(4584932..4585705) Pseudomonas putida GB-1 5871903 YP_001670330.1 CDS PputGB1_4104 NC_010322.1 4585720 4586217 R KEGG: pen:PSEEN4024 hypothetical protein; hypothetical protein complement(4585720..4586217) Pseudomonas putida GB-1 5871904 YP_001670331.1 CDS PputGB1_4105 NC_010322.1 4586310 4588352 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: pen:PSEEN4025 peptidase, S9 family; oligopeptidase B 4586310..4588352 Pseudomonas putida GB-1 5871905 YP_001670332.1 CDS PputGB1_4106 NC_010322.1 4588494 4588772 R KEGG: pen:PSEEN4027 hypothetical protein; hypothetical protein complement(4588494..4588772) Pseudomonas putida GB-1 5871906 YP_001670333.1 CDS PputGB1_4107 NC_010322.1 4588905 4589276 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pfl:PFL_1503 hypothetical protein; hypothetical protein 4588905..4589276 Pseudomonas putida GB-1 5871907 YP_001670334.1 CDS PputGB1_4108 NC_010322.1 4589348 4589818 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pfo:Pfl_1395 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 4589348..4589818 Pseudomonas putida GB-1 5871908 YP_001670335.1 CDS PputGB1_4109 NC_010322.1 4589894 4591384 R PFAM: Aldehyde Dehydrogenase; KEGG: rso:RSc2110 probable aldehyde dehydrogenase oxidoreductase protein; aldehyde dehydrogenase complement(4589894..4591384) Pseudomonas putida GB-1 5871909 YP_001670336.1 CDS PputGB1_4110 NC_010322.1 4591398 4592291 R PFAM: dihydrodipicolinate synthetase; KEGG: pau:PA14_09730 putative dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(4591398..4592291) Pseudomonas putida GB-1 5871910 YP_001670337.1 CDS PputGB1_4111 NC_010322.1 4592365 4593693 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pau:PA14_09740 putative MFS transporter; major facilitator superfamily transporter complement(4592365..4593693) Pseudomonas putida GB-1 5871911 YP_001670338.1 CDS PputGB1_4112 NC_010322.1 4593877 4595196 R PFAM: FAD dependent oxidoreductase; KEGG: pau:PA14_09750 putative oxidoreductase; FAD dependent oxidoreductase complement(4593877..4595196) Pseudomonas putida GB-1 5871912 YP_001670339.1 CDS PputGB1_4113 NC_010322.1 4595259 4595975 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pau:PA14_09760 putative transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4595259..4595975) Pseudomonas putida GB-1 5871913 YP_001670340.1 CDS PputGB1_4114 NC_010322.1 4596270 4597661 R TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; GABA permease complement(4596270..4597661) Pseudomonas putida GB-1 5871914 YP_001670341.1 CDS PputGB1_4115 NC_010322.1 4597897 4598235 D KEGG: pfo:Pfl_1394 hypothetical protein; hypothetical protein 4597897..4598235 Pseudomonas putida GB-1 5871915 YP_001670342.1 CDS PputGB1_4116 NC_010322.1 4598306 4599514 R KEGG: pen:PSEEN4030 hypothetical protein; hypothetical protein complement(4598306..4599514) Pseudomonas putida GB-1 5871916 YP_001670343.1 CDS PputGB1_4117 NC_010322.1 4599556 4600008 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN4031 hypothetical protein; hypothetical protein complement(4599556..4600008) Pseudomonas putida GB-1 5871917 YP_001670344.1 CDS PputGB1_4118 NC_010322.1 4600150 4600743 D PFAM: nitroreductase; KEGG: pen:PSEEN4032 nitroreductase; nitroreductase 4600150..4600743 Pseudomonas putida GB-1 5871918 YP_001670345.1 CDS PputGB1_4119 NC_010322.1 4600802 4601734 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4033 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(4600802..4601734) Pseudomonas putida GB-1 5871919 YP_001670346.1 CDS PputGB1_4120 NC_010322.1 4601737 4602030 R PFAM: protein of unknown function DUF709; KEGG: pen:PSEEN4034 hypothetical protein; hypothetical protein complement(4601737..4602030) Pseudomonas putida GB-1 5871920 YP_001670347.1 CDS PputGB1_4121 NC_010322.1 4602027 4603160 R TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pen:PSEEN4035 ribonuclease D, processes tRNA; ribonuclease D complement(4602027..4603160) Pseudomonas putida GB-1 5871921 YP_001670348.1 CDS PputGB1_4122 NC_010322.1 4603300 4604937 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pen:PSEEN4036 transmembrane sulfatase; sulfatase complement(4603300..4604937) Pseudomonas putida GB-1 5871922 YP_001670349.1 CDS PputGB1_4123 NC_010322.1 4605191 4605427 D KEGG: pen:PSEEN4038 hypothetical protein; hypothetical protein 4605191..4605427 Pseudomonas putida GB-1 5871923 YP_001670350.1 CDS PputGB1_4124 NC_010322.1 4605551 4606732 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN4039 cystathionine gamma-synthase; cystathionine gamma-lyase complement(4605551..4606732) Pseudomonas putida GB-1 5871924 YP_001670351.1 CDS PputGB1_4125 NC_010322.1 4606825 4607286 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4041 transcriptional regulator, AsnC familiy; AsnC family transcriptional regulator 4606825..4607286 Pseudomonas putida GB-1 5871925 YP_001670352.1 CDS PputGB1_4126 NC_010322.1 4607343 4609673 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN4042 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit complement(4607343..4609673) Pseudomonas putida GB-1 5871926 YP_001670353.1 CDS moaA NC_010322.1 4609898 4610902 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4609898..4610902 Pseudomonas putida GB-1 5871927 YP_001670354.1 CDS PputGB1_4128 NC_010322.1 4610923 4611822 D PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN4044 hypothetical protein; hypothetical protein 4610923..4611822 Pseudomonas putida GB-1 5871928 YP_001670355.1 CDS PputGB1_4129 NC_010322.1 4611835 4612374 R TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN4045 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(4611835..4612374) Pseudomonas putida GB-1 5871929 YP_001670356.1 CDS PputGB1_4130 NC_010322.1 4612516 4613403 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4046 transcriptional regulator, LysR family; LysR family transcriptional regulator 4612516..4613403 Pseudomonas putida GB-1 5871930 YP_001670357.1 CDS PputGB1_4131 NC_010322.1 4613391 4614173 R PFAM: helix-turn-helix- domain containing protein AraC type; PAS fold-4 domain protein; KEGG: pen:PSEEN4047 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4613391..4614173) Pseudomonas putida GB-1 5871931 YP_001670358.1 CDS PputGB1_4132 NC_010322.1 4614434 4616047 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4049 amino acid transporter; amino acid permease-associated protein 4614434..4616047 Pseudomonas putida GB-1 5871932 YP_001670359.1 CDS PputGB1_4133 NC_010322.1 4616071 4616997 D PFAM: proline racemase; KEGG: pen:PSEEN4050 proline racemase; proline racemase 4616071..4616997 Pseudomonas putida GB-1 5871933 YP_001670360.1 CDS PputGB1_4134 NC_010322.1 4617041 4617988 D PFAM: dihydrodipicolinate synthetase; KEGG: pen:PSEEN4051 dihydrodipicolinate synthase; dihydrodipicolinate synthetase 4617041..4617988 Pseudomonas putida GB-1 5871934 YP_001670361.1 CDS PputGB1_4135 NC_010322.1 4618083 4619660 D PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN4052 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase 4618083..4619660 Pseudomonas putida GB-1 5871935 YP_001670362.1 CDS PputGB1_4136 NC_010322.1 4619663 4620910 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4053 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase 4619663..4620910 Pseudomonas putida GB-1 5871936 YP_001670363.1 CDS PputGB1_4137 NC_010322.1 4620944 4622035 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN4054 xenobiotic reductase A; NADH:flavin oxidoreductase complement(4620944..4622035) Pseudomonas putida GB-1 5871937 YP_001670364.1 CDS PputGB1_4138 NC_010322.1 4622085 4622420 D PFAM: regulatory protein ArsR; KEGG: pen:PSEEN4055 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 4622085..4622420 Pseudomonas putida GB-1 5871938 YP_001670365.1 CDS PputGB1_4139 NC_010322.1 4622425 4623048 R PFAM: regulatory protein ArsR; LexA DNA-binding domain protein; Helix-turn-helix type 11 domain protein; KEGG: xau:Xaut_2681 putative transcriptional regulator; putative transcriptional regulator complement(4622425..4623048) Pseudomonas putida GB-1 5871939 YP_001670366.1 CDS PputGB1_4140 NC_010322.1 4623048 4623692 R KEGG: gme:Gmet_3376 hypothetical protein; hypothetical protein complement(4623048..4623692) Pseudomonas putida GB-1 5871940 YP_001670367.1 CDS PputGB1_4141 NC_010322.1 4623867 4625504 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(4623867..4625504) Pseudomonas putida GB-1 5871941 YP_001670368.1 CDS PputGB1_4142 NC_010322.1 4625832 4626023 R KEGG: pen:PSEEN4057 hypothetical protein; hypothetical protein complement(4625832..4626023) Pseudomonas putida GB-1 5871942 YP_001670369.1 CDS PputGB1_4143 NC_010322.1 4626212 4626829 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3330 transporter, LysE family; lysine exporter protein LysE/YggA 4626212..4626829 Pseudomonas putida GB-1 5871943 YP_001670370.1 CDS PputGB1_4144 NC_010322.1 4626932 4628140 R hypothetical protein complement(4626932..4628140) Pseudomonas putida GB-1 5871944 YP_001670371.1 CDS PputGB1_4145 NC_010322.1 4628151 4630064 R KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein complement(4628151..4630064) Pseudomonas putida GB-1 5871945 YP_001670372.1 CDS PputGB1_4146 NC_010322.1 4630073 4630933 R PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: psp:PSPPH_0908 lipoprotein, putative; SH3 type 3 domain-containing protein complement(4630073..4630933) Pseudomonas putida GB-1 5871946 YP_001670373.1 CDS PputGB1_4147 NC_010322.1 4631637 4632980 D PFAM: integrase family protein; KEGG: maq:Maqu_0395 phage integrase family protein; integrase family protein 4631637..4632980 Pseudomonas putida GB-1 5871947 YP_001670374.1 CDS PputGB1_4148 NC_010322.1 4633131 4633298 D PFAM: Prophage CP4-57 regulatory; KEGG: eli:ELI_04380 predicted transcriptional regulator; phage transcriptional regulator AlpA 4633131..4633298 Pseudomonas putida GB-1 5871948 YP_001670375.1 CDS PputGB1_4149 NC_010322.1 4634649 4635275 R KEGG: pna:Pnap_4284 hypothetical protein; hypothetical protein complement(4634649..4635275) Pseudomonas putida GB-1 5871949 YP_001670376.1 CDS PputGB1_4150 NC_010322.1 4635673 4636308 D KEGG: rba:RB4971 hypothetical protein; hypothetical protein 4635673..4636308 Pseudomonas putida GB-1 5871950 YP_001670377.1 CDS PputGB1_4151 NC_010322.1 4637043 4638140 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(4637043..4638140) Pseudomonas putida GB-1 5871951 YP_001670378.1 CDS PputGB1_4152 NC_010322.1 4638368 4639081 R hypothetical protein complement(4638368..4639081) Pseudomonas putida GB-1 5871952 YP_001670379.1 CDS PputGB1_4153 NC_010322.1 4639471 4641195 D PFAM: SMC domain protein; KEGG: ljo:LJ1055 predicted ATP-dependent endonuclease of the OLD family; SMC domain-containing protein 4639471..4641195 Pseudomonas putida GB-1 5871953 YP_001670380.1 CDS PputGB1_4154 NC_010322.1 4641198 4642835 D PFAM: UvrD/REP helicase; KEGG: ljo:LJ1056 hypothetical protein; UvrD/REP helicase 4641198..4642835 Pseudomonas putida GB-1 5871954 YP_001670381.1 CDS PputGB1_4155 NC_010322.1 4642968 4643690 D hypothetical protein 4642968..4643690 Pseudomonas putida GB-1 5871955 YP_001670382.1 CDS PputGB1_4156 NC_010322.1 4643852 4645759 R hypothetical protein complement(4643852..4645759) Pseudomonas putida GB-1 5871956 YP_001670383.1 CDS PputGB1_4157 NC_010322.1 4646396 4648240 R KEGG: gur:Gura_2918 hypothetical protein; hypothetical protein complement(4646396..4648240) Pseudomonas putida GB-1 5871957 YP_001670384.1 CDS PputGB1_4158 NC_010322.1 4648598 4648924 R KEGG: xcv:XCV2286 cytosine-specific DNA methyltransferase; hypothetical protein complement(4648598..4648924) Pseudomonas putida GB-1 5871958 YP_001670385.1 CDS PputGB1_4161 NC_010322.1 4650658 4651335 D hypothetical protein 4650658..4651335 Pseudomonas putida GB-1 5871960 YP_001670386.1 CDS PputGB1_4162 NC_010322.1 4651437 4651676 D KEGG: swi:Swit_0194 hypothetical protein; hypothetical protein 4651437..4651676 Pseudomonas putida GB-1 5871961 YP_001670387.1 CDS PputGB1_4163 NC_010322.1 4652907 4653275 D hypothetical protein 4652907..4653275 Pseudomonas putida GB-1 5871962 YP_001670388.1 CDS PputGB1_4164 NC_010322.1 4653523 4654899 D PFAM: Relaxase/mobilization nuclease family protein; KEGG: rme:Rmet_2839 hypothetical protein; relaxase/mobilization nuclease family protein 4653523..4654899 Pseudomonas putida GB-1 5871963 YP_001670389.1 CDS PputGB1_4165 NC_010322.1 4655213 4655494 R KEGG: psb:Psyr_4647 hypothetical protein; hypothetical protein complement(4655213..4655494) Pseudomonas putida GB-1 5871964 YP_001670390.1 CDS PputGB1_4166 NC_010322.1 4655791 4659951 R KEGG: ses:SARI_03320 hypothetical protein; hypothetical protein complement(4655791..4659951) Pseudomonas putida GB-1 5871965 YP_001670391.1 CDS PputGB1_4167 NC_010322.1 4661257 4661616 R KEGG: pfo:Pfl_3014 hypothetical protein; hypothetical protein complement(4661257..4661616) Pseudomonas putida GB-1 5871966 YP_001670392.1 CDS PputGB1_4168 NC_010322.1 4662495 4663325 D KEGG: xau:Xaut_4002 hypothetical protein; hypothetical protein 4662495..4663325 Pseudomonas putida GB-1 5871967 YP_001670393.1 CDS PputGB1_4169 NC_010322.1 4663402 4663833 R KEGG: pst:PSPTO_4696 ISPsy13, transposase OrfB; hypothetical protein complement(4663402..4663833) Pseudomonas putida GB-1 5871968 YP_001670394.1 CDS PputGB1_4170 NC_010322.1 4664438 4664818 D KEGG: ajs:Ajs_0813 hypothetical protein; hypothetical protein 4664438..4664818 Pseudomonas putida GB-1 5871969 YP_001670395.1 CDS PputGB1_4171 NC_010322.1 4665350 4665814 R hypothetical protein complement(4665350..4665814) Pseudomonas putida GB-1 5871970 YP_001670396.1 CDS PputGB1_4172 NC_010322.1 4666726 4667013 D PFAM: helix-turn-helix domain protein; KEGG: bpt:Bpet4560 predicted transcriptional regulator; XRE family transcriptional regulator 4666726..4667013 Pseudomonas putida GB-1 5871971 YP_001670397.1 CDS PputGB1_4173 NC_010322.1 4667623 4668270 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: asa:ASA_P5G021 putative partition protein; cobyrinic acid ac-diamide synthase 4667623..4668270 Pseudomonas putida GB-1 5871972 YP_001670398.1 CDS PputGB1_4174 NC_010322.1 4670584 4670829 D PFAM: helix-turn-helix domain protein; KEGG: pmy:Pmen_1180 putative transcriptional regulator, XRE family; XRE family transcriptional regulator 4670584..4670829 Pseudomonas putida GB-1 5871973 YP_001670399.1 CDS PputGB1_4175 NC_010322.1 4671144 4671584 R hypothetical protein complement(4671144..4671584) Pseudomonas putida GB-1 5871974 YP_001670400.1 CDS PputGB1_4176 NC_010322.1 4671846 4672559 D hypothetical protein 4671846..4672559 Pseudomonas putida GB-1 5871975 YP_001670401.1 CDS PputGB1_4177 NC_010322.1 4672662 4673396 R hypothetical protein complement(4672662..4673396) Pseudomonas putida GB-1 5871976 YP_001670402.1 CDS PputGB1_4178 NC_010322.1 4675604 4676314 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(4675604..4676314) Pseudomonas putida GB-1 5871978 YP_001670403.1 CDS PputGB1_4179 NC_010322.1 4676345 4677103 R PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4062 beta-lactamase-like; beta-lactamase domain-containing protein complement(4676345..4677103) Pseudomonas putida GB-1 5871979 YP_001670404.1 CDS PputGB1_4180 NC_010322.1 4677104 4678225 R KEGG: pen:PSEEN4063 lipoprotein; lipoprotein complement(4677104..4678225) Pseudomonas putida GB-1 5871980 YP_001670405.1 CDS PputGB1_4181 NC_010322.1 4678241 4679128 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(4678241..4679128) Pseudomonas putida GB-1 5871981 YP_001670406.1 CDS PputGB1_4182 NC_010322.1 4679388 4679948 D KEGG: pen:PSEEN4066 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 4679388..4679948 Pseudomonas putida GB-1 5871982 YP_001670407.1 CDS PputGB1_4183 NC_010322.1 4679960 4680433 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN4067 hypothetical protein; alkyl hydroperoxide reductase 4679960..4680433 Pseudomonas putida GB-1 5871983 YP_001670408.1 CDS PputGB1_4184 NC_010322.1 4680469 4681539 R PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN4068 permease (PerM family); hypothetical protein complement(4680469..4681539) Pseudomonas putida GB-1 5871984 YP_001670409.1 CDS PputGB1_4185 NC_010322.1 4681560 4681799 R PFAM: SirA family protein; KEGG: pen:PSEEN4069 hypothetical protein; SirA family protein complement(4681560..4681799) Pseudomonas putida GB-1 5871985 YP_001670410.1 CDS PputGB1_4186 NC_010322.1 4681921 4683357 D PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN4070 peptidase M48 family; peptidase M48 Ste24p 4681921..4683357 Pseudomonas putida GB-1 5871986 YP_001670411.1 CDS PputGB1_4187 NC_010322.1 4683389 4684447 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(4683389..4684447) Pseudomonas putida GB-1 5871987 YP_001670412.1 CDS PputGB1_4188 NC_010322.1 4684683 4686191 R PFAM: protein of unknown function DUF945; KEGG: pen:PSEEN4072 hypothetical protein; hypothetical protein complement(4684683..4686191) Pseudomonas putida GB-1 5871988 YP_001670413.1 CDS PputGB1_4189 NC_010322.1 4686636 4687988 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4074 amino acid transport protein (APC family); amino acid permease-associated protein 4686636..4687988 Pseudomonas putida GB-1 5871989 YP_001670414.1 CDS PputGB1_4190 NC_010322.1 4688055 4690121 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4075 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4688055..4690121 Pseudomonas putida GB-1 5871990 YP_001670415.1 CDS PputGB1_4191 NC_010322.1 4690204 4691163 D PFAM: cation efflux protein; KEGG: rpa:RPA2440 cation efflux protein; cation efflux protein 4690204..4691163 Pseudomonas putida GB-1 5871991 YP_001670416.1 CDS PputGB1_4192 NC_010322.1 4691363 4692049 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pen:PSEEN4083 hypothetical protein; exsB protein complement(4691363..4692049) Pseudomonas putida GB-1 5871993 YP_001670417.1 CDS PputGB1_4193 NC_010322.1 4692067 4692714 R PFAM: Radical SAM domain protein; KEGG: pen:PSEEN4084 radical activating enzyme; radical SAM domain-containing protein complement(4692067..4692714) Pseudomonas putida GB-1 5871994 YP_001670418.1 CDS PputGB1_4194 NC_010322.1 4692882 4693688 R TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN4085 hypothetical protein; tol-pal system protein YbgF complement(4692882..4693688) Pseudomonas putida GB-1 5871995 YP_001670419.1 CDS PputGB1_4195 NC_010322.1 4693695 4694195 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN4086 peptidoglycan-associated lipoprotein precursor; peptidoglycan-associated lipoprotein complement(4693695..4694195) Pseudomonas putida GB-1 5871996 YP_001670420.1 CDS tolB NC_010322.1 4694250 4695521 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(4694250..4695521) Pseudomonas putida GB-1 5871997 YP_001670421.1 CDS PputGB1_4197 NC_010322.1 4695548 4696666 R TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: pen:PSEEN4088 biopolymer transport protein TolA; protein TolA complement(4695548..4696666) Pseudomonas putida GB-1 5871998 YP_001670422.1 CDS PputGB1_4198 NC_010322.1 4696666 4697118 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN4089 biopolymer transport protein TolR; protein TolR complement(4696666..4697118) Pseudomonas putida GB-1 5871999 YP_001670423.1 CDS PputGB1_4199 NC_010322.1 4697133 4697828 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN4090 biopolymer transport protein TolQ; protein TolQ complement(4697133..4697828) Pseudomonas putida GB-1 5872000 YP_001670424.1 CDS PputGB1_4200 NC_010322.1 4697831 4698283 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4091 thioesterase; tol-pal system-associated acyl-CoA thioesterase complement(4697831..4698283) Pseudomonas putida GB-1 5872001 YP_001670425.1 CDS ruvB NC_010322.1 4698409 4699455 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(4698409..4699455) Pseudomonas putida GB-1 5872002 YP_001670426.1 CDS ruvA NC_010322.1 4699452 4700069 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(4699452..4700069) Pseudomonas putida GB-1 5872003 YP_001670427.1 CDS ruvC NC_010322.1 4700179 4700703 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(4700179..4700703) Pseudomonas putida GB-1 5872004 YP_001670428.1 CDS PputGB1_4204 NC_010322.1 4700830 4701576 R PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN4095 hypothetical protein; hypothetical protein complement(4700830..4701576) Pseudomonas putida GB-1 5872005 YP_001670429.1 CDS aspS NC_010322.1 4701691 4703466 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(4701691..4703466) Pseudomonas putida GB-1 5872006 YP_001670430.1 CDS PputGB1_4206 NC_010322.1 4703560 4703781 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pen:PSEEN4097 hypothetical protein; FmdB family regulatory protein complement(4703560..4703781) Pseudomonas putida GB-1 5872007 YP_001670431.1 CDS PputGB1_4207 NC_010322.1 4703874 4704203 R KEGG: pen:PSEEN4098 hypothetical protein; hypothetical protein complement(4703874..4704203) Pseudomonas putida GB-1 5872008 YP_001670432.1 CDS PputGB1_4208 NC_010322.1 4704341 4704814 R PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN4099 DNA-binding stress protein, Dps family; ferritin Dps family protein complement(4704341..4704814) Pseudomonas putida GB-1 5872009 YP_001670433.1 CDS PputGB1_4209 NC_010322.1 4705095 4705688 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4100 cold shock protein; cold-shock DNA-binding domain-containing protein 4705095..4705688 Pseudomonas putida GB-1 5872010 YP_001670434.1 CDS PputGB1_4210 NC_010322.1 4705750 4705956 R PFAM: SlyX family protein; KEGG: pen:PSEEN4101 hypothetical protein; hypothetical protein complement(4705750..4705956) Pseudomonas putida GB-1 5872011 YP_001670435.1 CDS PputGB1_4211 NC_010322.1 4705958 4706377 R PFAM: histidine triad (HIT) protein; KEGG: pfo:Pfl_4417 histidine triad (HIT) protein; histidine triad (HIT) protein complement(4705958..4706377) Pseudomonas putida GB-1 5872012 YP_001670436.1 CDS PputGB1_4212 NC_010322.1 4707069 4708352 D PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 4707069..4708352 Pseudomonas putida GB-1 5872013 YP_001670437.1 CDS PputGB1_4213 NC_010322.1 4708513 4710228 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4708513..4710228 Pseudomonas putida GB-1 5872014 YP_001670438.1 CDS PputGB1_4214 NC_010322.1 4710249 4711202 D KEGG: pen:PSEEN4106 lipoprotein; lipoprotein 4710249..4711202 Pseudomonas putida GB-1 5872015 YP_001670439.1 CDS PputGB1_4215 NC_010322.1 4711229 4712293 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(4711229..4712293) Pseudomonas putida GB-1 5872016 YP_001670440.1 CDS PputGB1_4216 NC_010322.1 4713268 4715910 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: pen:PSEEN4110 hypothetical protein; hypothetical protein 4713268..4715910 Pseudomonas putida GB-1 5872020 YP_001670441.1 CDS PputGB1_4217 NC_010322.1 4715910 4717202 D PFAM: virulence factor family protein; KEGG: pen:PSEEN4111 hypothetical protein; virulence factor family protein 4715910..4717202 Pseudomonas putida GB-1 5872021 YP_001670442.1 CDS PputGB1_4218 NC_010322.1 4717237 4719147 R PFAM: K potassium transporter; KEGG: pen:PSEEN4112 Kup system potassium uptake protein; K potassium transporter complement(4717237..4719147) Pseudomonas putida GB-1 5872022 YP_001670443.1 CDS rimO NC_010322.1 4719383 4720714 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4719383..4720714 Pseudomonas putida GB-1 5872023 YP_001670444.1 CDS PputGB1_4220 NC_010322.1 4720786 4721535 R KEGG: eba:ebA177 hypothetical protein; hypothetical protein complement(4720786..4721535) Pseudomonas putida GB-1 5872024 YP_001670445.1 CDS PputGB1_4221 NC_010322.1 4721590 4723305 R KEGG: eba:ebA176 hypothetical protein; hypothetical protein complement(4721590..4723305) Pseudomonas putida GB-1 5872025 YP_001670446.1 CDS PputGB1_4222 NC_010322.1 4723302 4724147 R KEGG: eba:ebA175 hypothetical protein; hypothetical protein complement(4723302..4724147) Pseudomonas putida GB-1 5872026 YP_001670447.1 CDS PputGB1_4223 NC_010322.1 4724232 4724858 R KEGG: pfo:Pfl_1971 hypothetical protein; hypothetical protein complement(4724232..4724858) Pseudomonas putida GB-1 5872027 YP_001670448.1 CDS PputGB1_4224 NC_010322.1 4725057 4725512 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4114 acyltransferase, GNAT family; N-acetyltransferase GCN5 4725057..4725512 Pseudomonas putida GB-1 5872028 YP_001670449.1 CDS PputGB1_4225 NC_010322.1 4725632 4726342 D PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN4116 hypothetical protein; RNA-binding S4 domain-containing protein 4725632..4726342 Pseudomonas putida GB-1 5872029 YP_001670450.1 CDS PputGB1_4226 NC_010322.1 4726392 4726853 D PFAM: protein of unknown function DUF1456; KEGG: pen:PSEEN4117 hypothetical protein; hypothetical protein 4726392..4726853 Pseudomonas putida GB-1 5872030 YP_001670451.1 CDS PputGB1_4227 NC_010322.1 4726860 4727552 D PFAM: protein of unknown function UPF0066; KEGG: pen:PSEEN4118 hypothetical protein; hypothetical protein 4726860..4727552 Pseudomonas putida GB-1 5872031 YP_001670452.1 CDS PputGB1_4228 NC_010322.1 4727616 4728938 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(4727616..4728938) Pseudomonas putida GB-1 5872032 YP_001670453.1 CDS PputGB1_4229 NC_010322.1 4729256 4730602 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1346 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase complement(4729256..4730602) Pseudomonas putida GB-1 5872033 YP_001670454.1 CDS PputGB1_4230 NC_010322.1 4730599 4731324 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1345 transcriptional regulatory protein PhoP; two component transcriptional regulator complement(4730599..4731324) Pseudomonas putida GB-1 5872034 YP_001670455.1 CDS PputGB1_4231 NC_010322.1 4731407 4732012 R KEGG: pen:PSEEN1343 outer membrane protein H1; outer membrane protein H1 complement(4731407..4732012) Pseudomonas putida GB-1 5872035 YP_001670456.1 CDS PputGB1_4232 NC_010322.1 4732143 4732934 D PFAM: dienelactone hydrolase; KEGG: pen:PSEEN1342 hydrolase; probable dienelactone hydrolase; dienelactone hydrolase 4732143..4732934 Pseudomonas putida GB-1 5872036 YP_001670457.1 CDS PputGB1_4233 NC_010322.1 4733008 4733709 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: pen:PSEEN1341 phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase 4733008..4733709 Pseudomonas putida GB-1 5872037 YP_001670458.1 CDS PputGB1_4234 NC_010322.1 4733713 4735320 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1340 sensory histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4733713..4735320) Pseudomonas putida GB-1 5872038 YP_001670459.1 CDS PputGB1_4235 NC_010322.1 4735317 4736015 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1339 DNA-binding response regulator; two component transcriptional regulator complement(4735317..4736015) Pseudomonas putida GB-1 5872039 YP_001670460.1 CDS PputGB1_4236 NC_010322.1 4736798 4739677 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 4736798..4739677 Pseudomonas putida GB-1 5872040 YP_001670461.1 CDS PputGB1_4237 NC_010322.1 4739816 4740001 D hypothetical protein 4739816..4740001 Pseudomonas putida GB-1 5872041 YP_001670462.1 CDS PputGB1_4238 NC_010322.1 4740448 4741698 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 4740448..4741698 Pseudomonas putida GB-1 5872042 YP_001670463.1 CDS PputGB1_4239 NC_010322.1 4742245 4743483 D PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin 4742245..4743483 Pseudomonas putida GB-1 5872043 YP_001670464.1 CDS PputGB1_4240 NC_010322.1 4743735 4744541 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pst:PSPTO_1053 hypothetical protein; NAD-dependent epimerase/dehydratase 4743735..4744541 Pseudomonas putida GB-1 5872044 YP_001670465.1 CDS PputGB1_4241 NC_010322.1 4744568 4745449 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pmy:Pmen_3300 SMP-30/gluconolaconase/LRE domain protein; SMP-30/gluconolaconase/LRE domain-containing protein 4744568..4745449 Pseudomonas putida GB-1 5872045 YP_001670466.1 CDS PputGB1_4242 NC_010322.1 4745514 4746485 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfo:Pfl_3454 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 4745514..4746485 Pseudomonas putida GB-1 5872046 YP_001670467.1 CDS PputGB1_4243 NC_010322.1 4746552 4747079 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfo:Pfl_3455 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4746552..4747079 Pseudomonas putida GB-1 5872047 YP_001670468.1 CDS PputGB1_4244 NC_010322.1 4747080 4748360 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: psp:PSPPH_0933 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 4747080..4748360 Pseudomonas putida GB-1 5872048 YP_001670469.1 CDS PputGB1_4245 NC_010322.1 4748418 4749341 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: psp:PSPPH_0932 hypothetical protein; hypothetical protein 4748418..4749341 Pseudomonas putida GB-1 5872049 YP_001670470.1 CDS PputGB1_4246 NC_010322.1 4749367 4750236 D PFAM: Aldose 1-epimerase; KEGG: pst:PSPTO_1047 hypothetical protein; aldose 1-epimerase 4749367..4750236 Pseudomonas putida GB-1 5872050 YP_001670471.1 CDS PputGB1_4247 NC_010322.1 4750286 4751575 R PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_5219 MFS transporter, phthalate permease family; major facilitator superfamily transporter complement(4750286..4751575) Pseudomonas putida GB-1 5872051 YP_001670472.1 CDS PputGB1_4248 NC_010322.1 4751739 4752635 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1324 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4751739..4752635) Pseudomonas putida GB-1 5872052 YP_001670473.1 CDS PputGB1_4249 NC_010322.1 4752708 4754744 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN1322 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit complement(4752708..4754744) Pseudomonas putida GB-1 5872053 YP_001670474.1 CDS PputGB1_4250 NC_010322.1 4754772 4755401 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(4754772..4755401) Pseudomonas putida GB-1 5872054 YP_001670475.1 CDS PputGB1_4251 NC_010322.1 4755538 4756089 R TIGRFAM: yecA family protein; KEGG: pen:PSEEN1320 hypothetical protein; yecA family protein complement(4755538..4756089) Pseudomonas putida GB-1 5872055 YP_001670476.1 CDS PputGB1_4252 NC_010322.1 4756182 4757171 R PFAM: Asparaginase/glutaminase; KEGG: bov:BOV_1888 asparaginase family protein; asparaginase/glutaminase complement(4756182..4757171) Pseudomonas putida GB-1 5872056 YP_001670477.1 CDS PputGB1_4253 NC_010322.1 4757168 4757491 R KEGG: aau:AAur_3986 putative integral membrane protein; hypothetical protein complement(4757168..4757491) Pseudomonas putida GB-1 5872057 YP_001670478.1 CDS PputGB1_4254 NC_010322.1 4757840 4758736 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2988 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4757840..4758736) Pseudomonas putida GB-1 5872058 YP_001670479.1 CDS PputGB1_4255 NC_010322.1 4759145 4759369 R hypothetical protein complement(4759145..4759369) Pseudomonas putida GB-1 5872059 YP_001670480.1 CDS PputGB1_4256 NC_010322.1 4759941 4760414 R KEGG: bxe:Bxe_C1245 tryptophan 2-monooxygenase; hypothetical protein complement(4759941..4760414) Pseudomonas putida GB-1 5872060 YP_001670481.1 CDS PputGB1_4257 NC_010322.1 4760542 4762185 R catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase complement(4760542..4762185) Pseudomonas putida GB-1 5872061 YP_001670482.1 CDS PputGB1_4258 NC_010322.1 4767866 4768762 D KEGG: pen:PSEEN1310 transporter, formate/nitrite family; formate/nitrate transporter 4767866..4768762 Pseudomonas putida GB-1 5872065 YP_001670483.1 CDS PputGB1_4259 NC_010322.1 4768766 4769857 R KEGG: pen:PSEEN1309 zinc-dependent hydrolase; zinc-dependent hydrolase complement(4768766..4769857) Pseudomonas putida GB-1 5872066 YP_001670484.1 CDS PputGB1_4260 NC_010322.1 4769978 4771060 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: pen:PSEEN1308 hypothetical protein; diguanylate cyclase 4769978..4771060 Pseudomonas putida GB-1 5872067 YP_001670485.1 CDS PputGB1_4261 NC_010322.1 4771112 4773697 D KEGG: pen:PSEEN1307 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4771112..4773697 Pseudomonas putida GB-1 5872068 YP_001670486.1 CDS PputGB1_4262 NC_010322.1 4773717 4774046 R KEGG: pen:PSEEN1306 hypothetical protein; hypothetical protein complement(4773717..4774046) Pseudomonas putida GB-1 5872069 YP_001670487.1 CDS PputGB1_4263 NC_010322.1 4774166 4775083 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1304 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4774166..4775083) Pseudomonas putida GB-1 5872070 YP_001670488.1 CDS PputGB1_4264 NC_010322.1 4775194 4775952 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1303 oxidoreductase, short-chain alcohol dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 4775194..4775952 Pseudomonas putida GB-1 5872071 YP_001670489.1 CDS PputGB1_4265 NC_010322.1 4775995 4776861 R PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1300 efflux transporter, membrane fusion protein; secretion protein HlyD family protein complement(4775995..4776861) Pseudomonas putida GB-1 5872072 YP_001670490.1 CDS PputGB1_4266 NC_010322.1 4776874 4777080 R PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN1299 hypothetical protein; hypothetical protein complement(4776874..4777080) Pseudomonas putida GB-1 5872073 YP_001670491.1 CDS PputGB1_4267 NC_010322.1 4777067 4779055 R PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN1298 hypothetical protein; fusaric acid resistance protein region complement(4777067..4779055) Pseudomonas putida GB-1 5872074 YP_001670492.1 CDS PputGB1_4268 NC_010322.1 4779258 4779374 R KEGG: pen:PSEEN1297 hypothetical protein; hypothetical protein complement(4779258..4779374) Pseudomonas putida GB-1 5872075 YP_001670493.1 CDS PputGB1_4269 NC_010322.1 4779511 4779672 R KEGG: pen:PSEEN1296 hypothetical protein; hypothetical protein complement(4779511..4779672) Pseudomonas putida GB-1 5872076 YP_001670494.1 CDS PputGB1_4270 NC_010322.1 4779739 4780068 R KEGG: pen:PSEEN1295 hypothetical protein; hypothetical protein complement(4779739..4780068) Pseudomonas putida GB-1 5872077 YP_001670495.1 CDS PputGB1_4271 NC_010322.1 4780132 4780827 R KEGG: pen:PSEEN1294 hypothetical protein; hypothetical protein complement(4780132..4780827) Pseudomonas putida GB-1 5872078 YP_001670496.1 CDS PputGB1_4272 NC_010322.1 4780990 4783836 D transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 4780990..4783836 Pseudomonas putida GB-1 5872079 YP_001670497.1 CDS PputGB1_4273 NC_010322.1 4784120 4786384 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN1292 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 4784120..4786384 Pseudomonas putida GB-1 5872080 YP_001670498.1 CDS PputGB1_4274 NC_010322.1 4786284 4787171 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pen:PSEEN1291 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase complement(4786284..4787171) Pseudomonas putida GB-1 5872081 YP_001670499.1 CDS PputGB1_4275 NC_010322.1 4787337 4787648 R KEGG: pen:PSEEN1288 hypothetical protein; hypothetical protein complement(4787337..4787648) Pseudomonas putida GB-1 5872082 YP_001670500.1 CDS PputGB1_4276 NC_010322.1 4788008 4789123 D PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN1286 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 4788008..4789123 Pseudomonas putida GB-1 5872083 YP_001670501.1 CDS PputGB1_4277 NC_010322.1 4789310 4790233 D PFAM: inner-membrane translocator; KEGG: pen:PSEEN1285 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4789310..4790233 Pseudomonas putida GB-1 5872084 YP_001670502.1 CDS livM NC_010322.1 4790230 4791486 D Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 4790230..4791486 Pseudomonas putida GB-1 5872085 YP_001670503.1 CDS livG NC_010322.1 4791483 4792250 D Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 4791483..4792250 Pseudomonas putida GB-1 5872086 YP_001670504.1 CDS PputGB1_4280 NC_010322.1 4792251 4792952 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1282 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 4792251..4792952 Pseudomonas putida GB-1 5872087 YP_001670505.1 CDS PputGB1_4281 NC_010322.1 4793059 4793733 D KEGG: pen:PSEEN1281 lipoprotein; lipoprotein 4793059..4793733 Pseudomonas putida GB-1 5872088 YP_001670506.1 CDS PputGB1_4282 NC_010322.1 4793837 4795444 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN1280 FAD-dependent dehydrogenases; FAD dependent oxidoreductase 4793837..4795444 Pseudomonas putida GB-1 5872089 YP_001670507.1 CDS nhaA NC_010322.1 4795741 4796916 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 4795741..4796916 Pseudomonas putida GB-1 5872090 YP_001670508.1 CDS PputGB1_4284 NC_010322.1 4796986 4797450 R PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1279 lipoprotein; 17 kDa surface antigen complement(4796986..4797450) Pseudomonas putida GB-1 5872091 YP_001670509.1 CDS PputGB1_4285 NC_010322.1 4797598 4797831 D KEGG: pen:PSEEN1278 hypothetical protein; hypothetical protein 4797598..4797831 Pseudomonas putida GB-1 5872092 YP_001670510.1 CDS PputGB1_4286 NC_010322.1 4797946 4798593 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(4797946..4798593) Pseudomonas putida GB-1 5872093 YP_001670511.1 CDS PputGB1_4287 NC_010322.1 4798612 4799589 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1276 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein complement(4798612..4799589) Pseudomonas putida GB-1 5872094 YP_001670512.1 CDS PputGB1_4288 NC_010322.1 4799689 4800834 R PFAM: beta-lactamase; KEGG: pen:PSEEN1275 beta-lactamase; beta-lactamase complement(4799689..4800834) Pseudomonas putida GB-1 5872095 YP_001670513.1 CDS PputGB1_4289 NC_010322.1 4800944 4803178 R KEGG: pen:PSEEN1274 hydrolase; beta-agarase complement(4800944..4803178) Pseudomonas putida GB-1 5872096 YP_001670514.1 CDS dinG NC_010322.1 4803258 4805402 R helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG complement(4803258..4805402) Pseudomonas putida GB-1 5872097 YP_001670515.1 CDS PputGB1_4291 NC_010322.1 4805501 4805965 D KEGG: pen:PSEEN1272 hypothetical protein; hypothetical protein 4805501..4805965 Pseudomonas putida GB-1 5872098 YP_001670516.1 CDS PputGB1_4292 NC_010322.1 4806037 4806795 R KEGG: pen:PSEEN1234 hypothetical protein; hypothetical protein complement(4806037..4806795) Pseudomonas putida GB-1 5872099 YP_001670517.1 CDS PputGB1_4293 NC_010322.1 4806788 4807063 R PFAM: protein of unknown function DUF1145; KEGG: pen:PSEEN1233 hypothetical protein; hypothetical protein complement(4806788..4807063) Pseudomonas putida GB-1 5872100 YP_001670518.1 CDS PputGB1_4294 NC_010322.1 4807162 4807881 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1232 outer memebrane protein, OmpA family; OmpA/MotB domain-containing protein complement(4807162..4807881) Pseudomonas putida GB-1 5872101 YP_001670519.1 CDS PputGB1_4295 NC_010322.1 4807971 4808663 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1231 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein complement(4807971..4808663) Pseudomonas putida GB-1 5872102 YP_001670520.1 CDS PputGB1_4296 NC_010322.1 4808823 4809317 D KEGG: pen:PSEEN1230 hypothetical protein; hypothetical protein 4808823..4809317 Pseudomonas putida GB-1 5872103 YP_001670521.1 CDS PputGB1_4297 NC_010322.1 4809320 4809796 D PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1229 hypothetical protein; hypothetical protein 4809320..4809796 Pseudomonas putida GB-1 5872104 YP_001670522.1 CDS PputGB1_4298 NC_010322.1 4809799 4810275 D SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN1228 hypothetical protein; water stress/hypersensitive response domain-containing protein 4809799..4810275 Pseudomonas putida GB-1 5872105 YP_001670523.1 CDS PputGB1_4299 NC_010322.1 4810283 4810480 D PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1227 hypothetical protein; SecC motif-containing protein 4810283..4810480 Pseudomonas putida GB-1 5872106 YP_001670524.1 CDS PputGB1_4300 NC_010322.1 4810511 4811413 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: psb:Psyr_4321 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent protein subunit beta complement(4810511..4811413) Pseudomonas putida GB-1 5872107 YP_001670525.1 CDS PputGB1_4301 NC_010322.1 4811410 4812621 R PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4774 hypothetical protein; major facilitator superfamily transporter complement(4811410..4812621) Pseudomonas putida GB-1 5872108 YP_001670526.1 CDS PputGB1_4302 NC_010322.1 4812618 4813406 R KEGG: psb:Psyr_4323 synthetase, putative; synthetase complement(4812618..4813406) Pseudomonas putida GB-1 5872109 YP_001670527.1 CDS PputGB1_4303 NC_010322.1 4813403 4814107 R KEGG: psb:Psyr_4324 serine O-acetyltransferase; Serine O-acetyltransferase complement(4813403..4814107) Pseudomonas putida GB-1 5872110 YP_001670528.1 CDS PputGB1_4304 NC_010322.1 4814289 4815629 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: psb:Psyr_4325 regulatory protein, GntR:aminotransferase, class I and II; transcriptional regulator 4814289..4815629 Pseudomonas putida GB-1 5872111 YP_001670529.1 CDS PputGB1_4305 NC_010322.1 4815733 4818174 D PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN1226 penicillin amidase; penicillin amidase 4815733..4818174 Pseudomonas putida GB-1 5872112 YP_001670530.1 CDS PputGB1_4306 NC_010322.1 4818310 4819326 D KEGG: pmy:Pmen_2196 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; RNA procession exonuclease-like protein 4818310..4819326 Pseudomonas putida GB-1 5872113 YP_001670531.1 CDS PputGB1_4307 NC_010322.1 4819323 4820981 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 4819323..4820981 Pseudomonas putida GB-1 5872114 YP_001670532.1 CDS PputGB1_4308 NC_010322.1 4821098 4822213 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pen:PSEEN1225 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 4821098..4822213 Pseudomonas putida GB-1 5872115 YP_001670533.1 CDS PputGB1_4309 NC_010322.1 4822280 4824730 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pmy:Pmen_2194 DEAD/H associated domain protein; DEAD/DEAH box helicase 4822280..4824730 Pseudomonas putida GB-1 5872116 YP_001670534.1 CDS PputGB1_4310 NC_010322.1 4824727 4825377 D KEGG: pmy:Pmen_2193 ICC-like phosphoesterase-like protein; ICC-like putative phosphoesterase 4824727..4825377 Pseudomonas putida GB-1 5872117 YP_001670535.1 CDS PputGB1_4311 NC_010322.1 4825384 4825611 R KEGG: pen:PSEEN1224 hypothetical protein; hypothetical protein complement(4825384..4825611) Pseudomonas putida GB-1 5872118 YP_001670536.1 CDS dcd NC_010322.1 4825706 4826272 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(4825706..4826272) Pseudomonas putida GB-1 5872119 YP_001670537.1 CDS PputGB1_4313 NC_010322.1 4826600 4826809 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1222 cold shock protein CapB; cold-shock DNA-binding domain-containing protein 4826600..4826809 Pseudomonas putida GB-1 5872120 YP_001670538.1 CDS PputGB1_4314 NC_010322.1 4826940 4828034 R PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN1221 ATPase, Mrp family; hypothetical protein complement(4826940..4828034) Pseudomonas putida GB-1 5872121 YP_001670539.1 CDS metG NC_010322.1 4828193 4830232 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 4828193..4830232 Pseudomonas putida GB-1 5872122 YP_001670540.1 CDS PputGB1_4316 NC_010322.1 4830321 4830869 D KEGG: pen:PSEEN1219 electron transport complex protein RnfA; electron transport complex protein RnfA 4830321..4830869 Pseudomonas putida GB-1 5872123 YP_001670541.1 CDS PputGB1_4317 NC_010322.1 4830866 4831840 D TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pen:PSEEN1217 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D 4830866..4831840 Pseudomonas putida GB-1 5872124 YP_001670542.1 CDS PputGB1_4318 NC_010322.1 4831837 4832439 D TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pen:PSEEN1216 electron transport complex protein RnfG; RnfABCDGE type electron transport complex subunit G 4831837..4832439 Pseudomonas putida GB-1 5872125 YP_001670543.1 CDS PputGB1_4319 NC_010322.1 4832432 4832956 D KEGG: pen:PSEEN1215 hypothetical protein; hypothetical protein 4832432..4832956 Pseudomonas putida GB-1 5872126 YP_001670544.1 CDS PputGB1_4320 NC_010322.1 4832961 4833599 D KEGG: pen:PSEEN1214 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 4832961..4833599 Pseudomonas putida GB-1 5872127 YP_001670545.1 CDS PputGB1_4321 NC_010322.1 4833704 4833880 D KEGG: pen:PSEEN1213 hypothetical protein; hypothetical protein 4833704..4833880 Pseudomonas putida GB-1 5872128 YP_001670546.1 CDS PputGB1_4322 NC_010322.1 4833932 4834555 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN1212 response regulator, LuxR family; two component LuxR family transcriptional regulator complement(4833932..4834555) Pseudomonas putida GB-1 5872129 YP_001670547.1 CDS PputGB1_4323 NC_010322.1 4834922 4835413 D KEGG: pen:PSEEN1211 hypothetical protein; hypothetical protein 4834922..4835413 Pseudomonas putida GB-1 5872130 YP_001670548.1 CDS PputGB1_4324 NC_010322.1 4835476 4836693 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(4835476..4836693) Pseudomonas putida GB-1 5872131 YP_001670549.1 CDS PputGB1_4325 NC_010322.1 4836850 4837776 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1209 outer membrane protein, OmpA/MotB family; OmpA/MotB domain-containing protein complement(4836850..4837776) Pseudomonas putida GB-1 5872132 YP_001670550.1 CDS PputGB1_4326 NC_010322.1 4837907 4838953 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 4837907..4838953 Pseudomonas putida GB-1 5872133 YP_001670551.1 CDS PputGB1_4327 NC_010322.1 4838950 4839624 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 4838950..4839624 Pseudomonas putida GB-1 5872134 YP_001670552.1 CDS PputGB1_4328 NC_010322.1 4839794 4840396 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1206 peroxiredoxin (alkyl hydroperoxide reductase C); alkyl hydroperoxide reductase complement(4839794..4840396) Pseudomonas putida GB-1 5872135 YP_001670553.1 CDS PputGB1_4329 NC_010322.1 4840620 4840838 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1205 bacterioferritin-associated ferredoxin Bfd; BFD/(2Fe-2S)-binding domain-containing protein 4840620..4840838 Pseudomonas putida GB-1 5872136 YP_001670554.1 CDS PputGB1_4330 NC_010322.1 4841040 4841513 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN1204 bacterioferritin; bacterioferritin 4841040..4841513 Pseudomonas putida GB-1 5872137 YP_001670555.1 CDS PputGB1_4331 NC_010322.1 4841571 4841906 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pen:PSEEN1203 hypothetical protein; glutaredoxin-like protein complement(4841571..4841906) Pseudomonas putida GB-1 5872138 YP_001670556.1 CDS PputGB1_4332 NC_010322.1 4841998 4844106 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1202 oxidoreductase molybdopterin-binding; molydopterin dinucleotide-binding region complement(4841998..4844106) Pseudomonas putida GB-1 5872139 YP_001670557.1 CDS PputGB1_4333 NC_010322.1 4844483 4845403 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 4844483..4845403 Pseudomonas putida GB-1 5872140 YP_001670558.1 CDS PputGB1_4334 NC_010322.1 4845400 4846509 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1200 ABC transporter, ATP-binding protein; ABC transporter-like protein 4845400..4846509 Pseudomonas putida GB-1 5872141 YP_001670559.1 CDS PputGB1_4335 NC_010322.1 4846546 4847016 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN1199 hypothetical protein; ybaK/ebsC protein complement(4846546..4847016) Pseudomonas putida GB-1 5872142 YP_001670560.1 CDS PputGB1_4336 NC_010322.1 4847319 4848170 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pen:PSEEN1198 glycerol uptake facilitator protein; MIP family channel protein 4847319..4848170 Pseudomonas putida GB-1 5872143 YP_001670561.1 CDS glpK NC_010322.1 4848221 4849720 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4848221..4849720 Pseudomonas putida GB-1 5872144 YP_001670562.1 CDS PputGB1_4338 NC_010322.1 4849822 4850577 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN1196 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator 4849822..4850577 Pseudomonas putida GB-1 5872145 YP_001670563.1 CDS glpD NC_010322.1 4850751 4852277 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 4850751..4852277 Pseudomonas putida GB-1 5872146 YP_001670564.1 CDS PputGB1_4340 NC_010322.1 4852335 4856714 R SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein complement(4852335..4856714) Pseudomonas putida GB-1 5872147 YP_001670565.1 CDS PputGB1_4341 NC_010322.1 4857053 4857970 D PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1193 glutamate/aspartate ABC transporter, periplasmic binding protein; extracellular solute-binding protein 4857053..4857970 Pseudomonas putida GB-1 5872148 YP_001670566.1 CDS PputGB1_4342 NC_010322.1 4858116 4858862 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1192 glutamate/aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 4858116..4858862 Pseudomonas putida GB-1 5872149 YP_001670567.1 CDS PputGB1_4343 NC_010322.1 4858863 4859534 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1191 glutamate-aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 4858863..4859534 Pseudomonas putida GB-1 5872150 YP_001670568.1 CDS PputGB1_4344 NC_010322.1 4859531 4860265 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1190 glutamate-aspartate ABC transporter, ATP-binding protein; ABC transporter-like protein 4859531..4860265 Pseudomonas putida GB-1 5872151 YP_001670569.1 CDS PputGB1_4345 NC_010322.1 4860335 4862239 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1189 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4860335..4862239 Pseudomonas putida GB-1 5872152 YP_001670570.1 CDS PputGB1_4346 NC_010322.1 4862236 4863564 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN1188 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 4862236..4863564 Pseudomonas putida GB-1 5872153 YP_001670571.1 CDS PputGB1_4347 NC_010322.1 4863590 4863925 D PFAM: GlpM family protein; KEGG: pen:PSEEN1187 membrane protein required for efficient alginate biosynthesis; GlpM family protein 4863590..4863925 Pseudomonas putida GB-1 5872154 YP_001670572.1 CDS PputGB1_4348 NC_010322.1 4863946 4864941 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1185 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(4863946..4864941) Pseudomonas putida GB-1 5872155 YP_001670573.1 CDS PputGB1_4349 NC_010322.1 4865138 4866055 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1184 transcriptional regulator MetR; LysR family transcriptional regulator 4865138..4866055 Pseudomonas putida GB-1 5872156 YP_001670574.1 CDS PputGB1_4350 NC_010322.1 4866039 4866452 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase complement(4866039..4866452) Pseudomonas putida GB-1 5872157 YP_001670575.1 CDS PputGB1_4351 NC_010322.1 4866616 4870905 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1182 ATP-dependent DNA helicase Lhr; DEAD/DEAH box helicase 4866616..4870905 Pseudomonas putida GB-1 5872158 YP_001670576.1 CDS PputGB1_4352 NC_010322.1 4871037 4872656 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN1180 ferredoxin-dependent glutamate synthase; glutamate synthase 4871037..4872656 Pseudomonas putida GB-1 5872159 YP_001670577.1 CDS PputGB1_4353 NC_010322.1 4872697 4874115 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1179 amino acid permease; amino acid permease-associated protein complement(4872697..4874115) Pseudomonas putida GB-1 5872160 YP_001670578.1 CDS PputGB1_4354 NC_010322.1 4874536 4877685 D KEGG: pen:PSEEN1178 membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase 4874536..4877685 Pseudomonas putida GB-1 5872161 YP_001670579.1 CDS PputGB1_4355 NC_010322.1 4877775 4878320 D PFAM: transcriptional regulator PadR family protein; KEGG: pen:PSEEN1177 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 4877775..4878320 Pseudomonas putida GB-1 5872162 YP_001670580.1 CDS PputGB1_4356 NC_010322.1 4878313 4879074 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN1176 iron-chelator utilization protein; FAD-binding 9 siderophore-interacting domain-containing protein 4878313..4879074 Pseudomonas putida GB-1 5872163 YP_001670581.1 CDS PputGB1_4357 NC_010322.1 4879132 4879767 R KEGG: pen:PSEEN1175 hypothetical protein; hypothetical protein complement(4879132..4879767) Pseudomonas putida GB-1 5872164 YP_001670582.1 CDS PputGB1_4358 NC_010322.1 4879769 4879990 R KEGG: pen:PSEEN1174 hypothetical protein; hypothetical protein complement(4879769..4879990) Pseudomonas putida GB-1 5872165 YP_001670583.1 CDS PputGB1_4359 NC_010322.1 4880155 4882203 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1173 TonB-dependent receptor; TonB-dependent receptor 4880155..4882203 Pseudomonas putida GB-1 5872166 YP_001670584.1 CDS PputGB1_4360 NC_010322.1 4882422 4883756 D PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN1171 porin B precursor (outer membrane protein D1) (glucose porin); carbohydrate-selective porin OprB 4882422..4883756 Pseudomonas putida GB-1 5872167 YP_001670585.1 CDS PputGB1_4361 NC_010322.1 4883786 4886197 D TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1170 glucose dehydrogenase Gcd; PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 4883786..4886197 Pseudomonas putida GB-1 5872168 YP_001670586.1 CDS PputGB1_4362 NC_010322.1 4886408 4888825 D KEGG: pen:PSEEN4367 DNA-binding ATP-dependent protease La-2; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 4886408..4888825 Pseudomonas putida GB-1 5872169 YP_001670587.1 CDS PputGB1_4363 NC_010322.1 4888934 4889326 D KEGG: pfl:PFL_4924 lipoprotein, putative; putative lipoprotein 4888934..4889326 Pseudomonas putida GB-1 5872170 YP_001670588.1 CDS PputGB1_4364 NC_010322.1 4889333 4890268 R KEGG: psb:Psyr_3990 hypothetical protein; hypothetical protein complement(4889333..4890268) Pseudomonas putida GB-1 5872171 YP_001670589.1 CDS PputGB1_4365 NC_010322.1 4890270 4891460 R KEGG: plu:plu3075 hypothetical protein; hypothetical protein complement(4890270..4891460) Pseudomonas putida GB-1 5872172 YP_001670590.1 CDS PputGB1_4366 NC_010322.1 4891600 4892406 D TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4372 methyltransferase; methyltransferase 4891600..4892406 Pseudomonas putida GB-1 5872173 YP_001670591.1 CDS PputGB1_4367 NC_010322.1 4892403 4893359 D TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; KEGG: pen:PSEEN4373 methyltransferase; methyltransferase 4892403..4893359 Pseudomonas putida GB-1 5872174 YP_001670592.1 CDS PputGB1_4368 NC_010322.1 4893429 4893632 R KEGG: pen:PSEEN4374 hypothetical protein; hypothetical protein complement(4893429..4893632) Pseudomonas putida GB-1 5872175 YP_001670593.1 CDS PputGB1_4369 NC_010322.1 4893872 4894546 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4285 heavy-metal DNA-binding response regulator CzrR; two component heavy metal response transcriptional regulator 4893872..4894546 Pseudomonas putida GB-1 5872176 YP_001670594.1 CDS PputGB1_4370 NC_010322.1 4894543 4895925 D KEGG: pen:PSEEN4286 heavy metal sensor histidine kinase; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 4894543..4895925 Pseudomonas putida GB-1 5872177 YP_001670595.1 CDS PputGB1_4371 NC_010322.1 4895972 4896712 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(4895972..4896712) Pseudomonas putida GB-1 5872178 YP_001670596.1 CDS recO NC_010322.1 4896756 4897439 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(4896756..4897439) Pseudomonas putida GB-1 5872179 YP_001670597.1 CDS era NC_010322.1 4897564 4898466 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(4897564..4898466) Pseudomonas putida GB-1 5872180 YP_001670598.1 CDS rnc NC_010322.1 4898459 4899148 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(4898459..4899148) Pseudomonas putida GB-1 5872181 YP_001670599.1 CDS PputGB1_4375 NC_010322.1 4899312 4900166 R KEGG: pen:PSEEN4291 leader peptidase (signal peptidase I) , serine protease; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(4899312..4900166) Pseudomonas putida GB-1 5872182 YP_001670600.1 CDS PputGB1_4376 NC_010322.1 4900172 4901962 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(4900172..4901962) Pseudomonas putida GB-1 5872183 YP_001670601.1 CDS PputGB1_4377 NC_010322.1 4902153 4903586 R KEGG: pen:PSEEN4293 serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(4902153..4903586) Pseudomonas putida GB-1 5872184 YP_001670602.1 CDS PputGB1_4378 NC_010322.1 4903763 4904728 R PFAM: MucB/RseB family protein; KEGG: pen:PSEEN4294 sigma factor AlgU regulatory protein MucB; sigma E regulatory protein MucB/RseB complement(4903763..4904728) Pseudomonas putida GB-1 5872185 YP_001670603.1 CDS PputGB1_4379 NC_010322.1 4904741 4905331 R PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: pen:PSEEN4295 sigma factor AlgU negative regulatory protein MucA; anti sigma-E protein, RseA complement(4904741..4905331) Pseudomonas putida GB-1 5872186 YP_001670604.1 CDS algU NC_010322.1 4905363 4905944 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU complement(4905363..4905944) Pseudomonas putida GB-1 5872187 YP_001670605.1 CDS PputGB1_4381 NC_010322.1 4906380 4907987 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 4906380..4907987 Pseudomonas putida GB-1 5872188 YP_001670606.1 CDS PputGB1_4382 NC_010322.1 4908602 4908841 R hypothetical protein complement(4908602..4908841) Pseudomonas putida GB-1 5872189 YP_001670607.1 CDS PputGB1_4383 NC_010322.1 4909799 4910392 R hypothetical protein complement(4909799..4910392) Pseudomonas putida GB-1 5872190 YP_001670608.1 CDS PputGB1_4384 NC_010322.1 4910443 4911882 R PFAM: integrase family protein; KEGG: eca:ECA2306 probable phage integrase; integrase family protein complement(4910443..4911882) Pseudomonas putida GB-1 5872191 YP_001670609.1 CDS PputGB1_4385 NC_010322.1 4911968 4912105 D KEGG: pen:PSEEN4297 L-aspartate oxidase (quinolinate synthetase B); L-aspartate oxidase 4911968..4912105 Pseudomonas putida GB-1 5872192 YP_001670610.1 CDS PputGB1_4386 NC_010322.1 4912188 4912652 R KEGG: pen:PSEEN4298 hypothetical protein; hypothetical protein complement(4912188..4912652) Pseudomonas putida GB-1 5872193 YP_001670611.1 CDS PputGB1_4387 NC_010322.1 4912636 4912890 R PFAM: protein of unknown function DUF339; KEGG: pen:PSEEN4299 hypothetical protein; hypothetical protein complement(4912636..4912890) Pseudomonas putida GB-1 5872194 YP_001670612.1 CDS PputGB1_4388 NC_010322.1 4913024 4913965 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: pen:PSEEN4300 hypothetical protein; folate-binding protein YgfZ 4913024..4913965 Pseudomonas putida GB-1 5872195 YP_001670613.1 CDS PputGB1_4389 NC_010322.1 4914015 4914827 D PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4301 hypothetical protein; putative signal transduction protein 4914015..4914827 Pseudomonas putida GB-1 5872196 YP_001670614.1 CDS PputGB1_4390 NC_010322.1 4914853 4916232 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pen:PSEEN4302 sensor histidine kinase TctE; integral membrane sensor signal transduction histidine kinase complement(4914853..4916232) Pseudomonas putida GB-1 5872197 YP_001670615.1 CDS PputGB1_4391 NC_010322.1 4916225 4916896 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4303 DNA-binding response regulator TctD; two component transcriptional regulator complement(4916225..4916896) Pseudomonas putida GB-1 5872198 YP_001670616.1 CDS PputGB1_4392 NC_010322.1 4917097 4918386 D PFAM: outer membrane porin; KEGG: pen:PSEEN4304 porin, OprD family; outer membrane porin 4917097..4918386 Pseudomonas putida GB-1 5872199 YP_001670617.1 CDS PputGB1_4393 NC_010322.1 4918433 4919413 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4305 tricarboxylate transport protein TctC; hypothetical protein 4918433..4919413 Pseudomonas putida GB-1 5872200 YP_001670618.1 CDS PputGB1_4394 NC_010322.1 4919598 4920056 D KEGG: pen:PSEEN4306 tricarboxylate transport protein TctB; tricarboxylate transport protein TctB 4919598..4920056 Pseudomonas putida GB-1 5872201 YP_001670619.1 CDS PputGB1_4395 NC_010322.1 4920060 4921574 D PFAM: protein of unknown function DUF112 transmembrane; KEGG: pen:PSEEN4307 tricarboxylate transport protein TctA; hypothetical protein 4920060..4921574 Pseudomonas putida GB-1 5872202 YP_001670620.1 CDS PputGB1_4396 NC_010322.1 4921567 4922598 D TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: pen:PSEEN4308 ammonia monooxygenase; membrane protein AbrB 4921567..4922598 Pseudomonas putida GB-1 5872203 YP_001670621.1 CDS PputGB1_4397 NC_010322.1 4922657 4923349 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(4922657..4923349) Pseudomonas putida GB-1 5872204 YP_001670622.1 CDS PputGB1_4398 NC_010322.1 4923476 4924582 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN4313 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 4923476..4924582 Pseudomonas putida GB-1 5872205 YP_001670623.1 CDS PputGB1_4399 NC_010322.1 4924628 4925077 R KEGG: pen:PSEEN4314 lipoprotein; lipoprotein complement(4924628..4925077) Pseudomonas putida GB-1 5872206 YP_001670624.1 CDS PputGB1_4400 NC_010322.1 4925290 4926771 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN4315 diguanylate cyclase (GGDEF domain); diguanylate cyclase 4925290..4926771 Pseudomonas putida GB-1 5872207 YP_001670625.1 CDS PputGB1_4401 NC_010322.1 4926764 4926976 D KEGG: pen:PSEEN4316 hypothetical protein; hypothetical protein 4926764..4926976 Pseudomonas putida GB-1 5872208 YP_001670626.1 CDS PputGB1_4402 NC_010322.1 4926985 4927677 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN4317 16S rRNA pseudouridylate 516 synthase; pseudouridine synthase 4926985..4927677 Pseudomonas putida GB-1 5872209 YP_001670627.1 CDS PputGB1_4403 NC_010322.1 4928126 4929013 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4319 (R)-3-hydroxydecanoyl-ACP:CoA transacylase (3-hydroxyacyl-CoA-acyl carrier protein transferase); alpha/beta hydrolase fold family protein 4928126..4929013 Pseudomonas putida GB-1 5872210 YP_001670628.1 CDS PputGB1_4404 NC_010322.1 4929411 4931117 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4320 sulfate transporter; sulfate transporter 4929411..4931117 Pseudomonas putida GB-1 5872212 YP_001670629.1 CDS PputGB1_4405 NC_010322.1 4931156 4932211 D KEGG: pen:PSEEN4330 hypothetical protein; hypothetical protein 4931156..4932211 Pseudomonas putida GB-1 5872213 YP_001670630.1 CDS PputGB1_4406 NC_010322.1 4932245 4933459 R KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein complement(4932245..4933459) Pseudomonas putida GB-1 5872214 YP_001670631.1 CDS PputGB1_4407 NC_010322.1 4933522 4934139 R PFAM: protein of unknown function DUF477; KEGG: pen:PSEEN4338 hypothetical protein; hypothetical protein complement(4933522..4934139) Pseudomonas putida GB-1 5872215 YP_001670632.1 CDS PputGB1_4408 NC_010322.1 4934326 4936617 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: pen:PSEEN4339 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase family protein 4934326..4936617 Pseudomonas putida GB-1 5872216 YP_001670633.1 CDS PputGB1_4409 NC_010322.1 4936703 4938460 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4340 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4936703..4938460 Pseudomonas putida GB-1 5872217 YP_001670634.1 CDS PputGB1_4410 NC_010322.1 4938454 4939788 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN4341 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 4938454..4939788 Pseudomonas putida GB-1 5872218 YP_001670635.1 CDS PputGB1_4411 NC_010322.1 4940031 4941350 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4342 dicarboxylate transport protein (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 4940031..4941350 Pseudomonas putida GB-1 5872219 YP_001670636.1 CDS PputGB1_4412 NC_010322.1 4941551 4942303 R PFAM: protein of unknown function DUF347; KEGG: pen:PSEEN4344 hypothetical protein; hypothetical protein complement(4941551..4942303) Pseudomonas putida GB-1 5872220 YP_001670637.1 CDS PputGB1_4413 NC_010322.1 4942645 4942932 D KEGG: pen:PSEEN4345 hypothetical protein; hypothetical protein 4942645..4942932 Pseudomonas putida GB-1 5872221 YP_001670638.1 CDS PputGB1_4414 NC_010322.1 4943051 4943656 D KEGG: pen:PSEEN4346 hypothetical protein; hypothetical protein 4943051..4943656 Pseudomonas putida GB-1 5872222 YP_001670639.1 CDS PputGB1_4415 NC_010322.1 4943657 4943923 R KEGG: pen:PSEEN4347 hypothetical protein; hypothetical protein complement(4943657..4943923) Pseudomonas putida GB-1 5872223 YP_001670640.1 CDS PputGB1_4416 NC_010322.1 4943940 4944233 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4348 hypothetical protein; antibiotic biosynthesis monooxygenase complement(4943940..4944233) Pseudomonas putida GB-1 5872224 YP_001670641.1 CDS PputGB1_4417 NC_010322.1 4944436 4945356 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pen:PSEEN4349 transcriptional regulator, AraC family; AraC family transcriptional regulator 4944436..4945356 Pseudomonas putida GB-1 5872225 YP_001670642.1 CDS PputGB1_4418 NC_010322.1 4945429 4947066 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pen:PSEEN4350 acetolactate synthase, large subunit; hypothetical protein complement(4945429..4947066) Pseudomonas putida GB-1 5872226 YP_001670643.1 CDS PputGB1_4419 NC_010322.1 4947181 4948056 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4351 transcriptional regulator, LysR family; LysR family transcriptional regulator 4947181..4948056 Pseudomonas putida GB-1 5872227 YP_001670644.1 CDS PputGB1_4420 NC_010322.1 4948155 4948769 R PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; KEGG: pen:PSEEN4352 hypothetical protein; NAD-dependent epimerase/dehydratase complement(4948155..4948769) Pseudomonas putida GB-1 5872228 YP_001670645.1 CDS PputGB1_4421 NC_010322.1 4948797 4949672 R PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4353 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein complement(4948797..4949672) Pseudomonas putida GB-1 5872229 YP_001670646.1 CDS PputGB1_4422 NC_010322.1 4949775 4950683 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4354 transcriptional regulator, LysR family; LysR family transcriptional regulator 4949775..4950683 Pseudomonas putida GB-1 5872230 YP_001670647.1 CDS PputGB1_4423 NC_010322.1 4950756 4950896 D KEGG: pen:PSEEN4355 hypothetical protein; hypothetical protein 4950756..4950896 Pseudomonas putida GB-1 5872231 YP_001670648.1 CDS PputGB1_4424 NC_010322.1 4950916 4951785 R KEGG: pen:PSEEN4356 carboxyphosphonoenolpyruvate phosphonomutase; carboxyphosphonoenolpyruvate phosphonomutase complement(4950916..4951785) Pseudomonas putida GB-1 5872232 YP_001670649.1 CDS PputGB1_4425 NC_010322.1 4952168 4953619 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4357 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 4952168..4953619 Pseudomonas putida GB-1 5872233 YP_001670650.1 CDS PputGB1_4426 NC_010322.1 4953705 4954337 R PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: pen:PSEEN4359 transcriptional regulator TtgR for multidrug efflux pump (TetR/AcrR family); TetR family transcriptional regulator complement(4953705..4954337) Pseudomonas putida GB-1 5872234 YP_001670651.1 CDS PputGB1_4427 NC_010322.1 4954595 4955749 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4360 multidrug/solvent efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 4954595..4955749 Pseudomonas putida GB-1 5872235 YP_001670652.1 CDS PputGB1_4428 NC_010322.1 4955753 4958905 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4361 multidrug/solvent RND transporter TtgB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4955753..4958905 Pseudomonas putida GB-1 5872236 YP_001670653.1 CDS PputGB1_4429 NC_010322.1 4958902 4960356 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4362 multidrug/solvent efflux outer membrane protein TtgC, RND family; RND efflux system outer membrane lipoprotein 4958902..4960356 Pseudomonas putida GB-1 5872237 YP_001670654.1 CDS PputGB1_4430 NC_010322.1 4960609 4961865 D PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin 4960609..4961865 Pseudomonas putida GB-1 5872238 YP_001670655.1 CDS PputGB1_4431 NC_010322.1 4962014 4962937 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4364 transcriptional regulator, LysR family; LysR family transcriptional regulator 4962014..4962937 Pseudomonas putida GB-1 5872239 YP_001670656.1 CDS PputGB1_4432 NC_010322.1 4963050 4963562 D PFAM: protein of unknown function DUF962; KEGG: pen:PSEEN4366 hypothetical protein; hypothetical protein 4963050..4963562 Pseudomonas putida GB-1 5872240 YP_001670657.1 CDS PputGB1_4433 NC_010322.1 4963580 4963972 R KEGG: pen:PSEEN1169 gamma-carboxymuconolactone decarboxylase (CMD); TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase complement(4963580..4963972) Pseudomonas putida GB-1 5872241 YP_001670658.1 CDS PputGB1_4434 NC_010322.1 4963983 4964774 R TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase complement(4963983..4964774) Pseudomonas putida GB-1 5872242 YP_001670659.1 CDS PputGB1_4435 NC_010322.1 4964786 4966138 R Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase complement(4964786..4966138) Pseudomonas putida GB-1 5872243 YP_001670660.1 CDS PputGB1_4436 NC_010322.1 4966148 4967437 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1166 dicarboxylic acid transport protein; alpha-ketoglutarate permease (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter complement(4966148..4967437) Pseudomonas putida GB-1 5872244 YP_001670661.1 CDS PputGB1_4437 NC_010322.1 4967627 4968829 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(4967627..4968829) Pseudomonas putida GB-1 5872245 YP_001670662.1 CDS PputGB1_4438 NC_010322.1 4969102 4970448 R TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1162 4-hydroxybenzoate transporter (MFS superfamily); benzoate transport complement(4969102..4970448) Pseudomonas putida GB-1 5872246 YP_001670663.1 CDS PputGB1_4439 NC_010322.1 4970770 4971645 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN1160 regulatory protein for pca operon (activator); IclR family transcriptional regulator complement(4970770..4971645) Pseudomonas putida GB-1 5872247 YP_001670664.1 CDS PputGB1_4440 NC_010322.1 4972121 4972321 D KEGG: pen:PSEEN1158 hypothetical protein; hypothetical protein 4972121..4972321 Pseudomonas putida GB-1 5872248 YP_001670665.1 CDS PputGB1_4441 NC_010322.1 4972615 4974108 D PFAM: phosphate transporter; KEGG: pen:PSEEN1157 low-affinity inorganic phosphate transporter; phosphate transporter 4972615..4974108 Pseudomonas putida GB-1 5872249 YP_001670666.1 CDS PputGB1_4442 NC_010322.1 4974204 4975679 R PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: pen:PSEEN1155 hypothetical protein; hypothetical protein complement(4974204..4975679) Pseudomonas putida GB-1 5872250 YP_001670667.1 CDS PputGB1_4443 NC_010322.1 4975848 4977722 D PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1154 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 4975848..4977722 Pseudomonas putida GB-1 5872251 YP_001670668.1 CDS PputGB1_4444 NC_010322.1 4977943 4979064 D PFAM: glycosyl transferase group 1; KEGG: pfo:Pfl_4432 glycosyl transferase, group 1; glycosyl transferase group 1 protein 4977943..4979064 Pseudomonas putida GB-1 5872252 YP_001670669.1 CDS PputGB1_4445 NC_010322.1 4979057 4979821 D KEGG: pfo:Pfl_4433 hypothetical protein; hypothetical protein 4979057..4979821 Pseudomonas putida GB-1 5872253 YP_001670670.1 CDS PputGB1_4446 NC_010322.1 4979818 4980810 D PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4434 hypothetical protein; hypothetical protein 4979818..4980810 Pseudomonas putida GB-1 5872254 YP_001670671.1 CDS purU NC_010322.1 4981016 4981867 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(4981016..4981867) Pseudomonas putida GB-1 5872255 YP_001670672.1 CDS PputGB1_4448 NC_010322.1 4982139 4982516 D KEGG: pen:PSEEN1151 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit 4982139..4982516 Pseudomonas putida GB-1 5872256 YP_001670673.1 CDS sbcB NC_010322.1 4982589 4984022 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(4982589..4984022) Pseudomonas putida GB-1 5872257 YP_001670674.1 CDS PputGB1_4450 NC_010322.1 4984080 4984439 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN1149 hypothetical protein; type IV pilus assembly PilZ complement(4984080..4984439) Pseudomonas putida GB-1 5872258 YP_001670675.1 CDS PputGB1_4451 NC_010322.1 4984563 4984949 R KEGG: pen:PSEEN1148 hypothetical protein; hypothetical protein complement(4984563..4984949) Pseudomonas putida GB-1 5872259 YP_001670676.1 CDS PputGB1_4452 NC_010322.1 4985129 4986583 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4985129..4986583 Pseudomonas putida GB-1 5872260 YP_001670677.1 CDS PputGB1_4453 NC_010322.1 4986625 4987545 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN1146 ferredoxin reductase; hypothetical protein complement(4986625..4987545) Pseudomonas putida GB-1 5872261 YP_001670678.1 CDS PputGB1_4454 NC_010322.1 4987795 4989318 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pen:PSEEN1145 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 4987795..4989318 Pseudomonas putida GB-1 5872262 YP_001670679.1 CDS PputGB1_4455 NC_010322.1 4989422 4990294 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3270 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4989422..4990294) Pseudomonas putida GB-1 5872263 YP_001670680.1 CDS PputGB1_4456 NC_010322.1 4990291 4990881 R KEGG: pen:PSEEN1144 hypothetical protein; hypothetical protein complement(4990291..4990881) Pseudomonas putida GB-1 5872264 YP_001670681.1 CDS PputGB1_4457 NC_010322.1 4990997 4991395 D PFAM: protein of unknown function DUF1486; KEGG: pmy:Pmen_3272 protein of unknown function DUF1486; hypothetical protein 4990997..4991395 Pseudomonas putida GB-1 5872265 YP_001670682.1 CDS PputGB1_4458 NC_010322.1 4991465 4992043 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN1143 protease C56; PfpI family intracellular peptidase complement(4991465..4992043) Pseudomonas putida GB-1 5872266 YP_001670683.1 CDS PputGB1_4459 NC_010322.1 4992095 4993252 R KEGG: pen:PSEEN1142 phospholipase; phospholipase complement(4992095..4993252) Pseudomonas putida GB-1 5872267 YP_001670684.1 CDS PputGB1_4460 NC_010322.1 4993254 4993835 R PFAM: YceI family protein; KEGG: pen:PSEEN1141 hypothetical protein; hypothetical protein complement(4993254..4993835) Pseudomonas putida GB-1 5872268 YP_001670685.1 CDS PputGB1_4461 NC_010322.1 4993880 4994176 R KEGG: pen:PSEEN1140 hypothetical protein; hypothetical protein complement(4993880..4994176) Pseudomonas putida GB-1 5872269 YP_001670686.1 CDS PputGB1_4462 NC_010322.1 4994173 4995261 R PFAM: beta-lactamase; KEGG: pen:PSEEN1139 beta-lactamase; beta-lactamase complement(4994173..4995261) Pseudomonas putida GB-1 5872270 YP_001670687.1 CDS PputGB1_4463 NC_010322.1 4995332 4996219 R KEGG: pen:PSEEN1138 hypothetical protein; hypothetical protein complement(4995332..4996219) Pseudomonas putida GB-1 5872271 YP_001670688.1 CDS PputGB1_4464 NC_010322.1 4996379 4997134 D KEGG: pen:PSEEN1137 hypothetical protein; hypothetical protein 4996379..4997134 Pseudomonas putida GB-1 5872272 YP_001670689.1 CDS PputGB1_4465 NC_010322.1 4997134 4997922 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN1136 acyltransferase; phospholipid/glycerol acyltransferase 4997134..4997922 Pseudomonas putida GB-1 5872273 YP_001670690.1 CDS PputGB1_4466 NC_010322.1 4997984 4998568 R PFAM: protein of unknown function DUF479; KEGG: pen:PSEEN1129 hypothetical protein; hypothetical protein complement(4997984..4998568) Pseudomonas putida GB-1 5872274 YP_001670691.1 CDS PputGB1_4467 NC_010322.1 4998718 4999020 D PFAM: regulatory protein ArsR; KEGG: pen:PSEEN1128 transcriptional regulator (ArsR family); ArsR family transcriptional regulator 4998718..4999020 Pseudomonas putida GB-1 5872275 YP_001670692.1 CDS PputGB1_4468 NC_010322.1 4999038 5000087 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1127 xenobiotic reductase B; NADH:flavin oxidoreductase 4999038..5000087 Pseudomonas putida GB-1 5872276 YP_001670693.1 CDS PputGB1_4469 NC_010322.1 5000155 5001024 R KEGG: pen:PSEEN1126 hypothetical protein; hypothetical protein complement(5000155..5001024) Pseudomonas putida GB-1 5872277 YP_001670694.1 CDS PputGB1_4470 NC_010322.1 5001112 5002107 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pen:PSEEN1125 nucleoside-diphosphate-sugar epimerases; NAD-dependent epimerase/dehydratase complement(5001112..5002107) Pseudomonas putida GB-1 5872278 YP_001670695.1 CDS PputGB1_4471 NC_010322.1 5002157 5003047 R specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein complement(5002157..5003047) Pseudomonas putida GB-1 5872279 YP_001670696.1 CDS PputGB1_4472 NC_010322.1 5003148 5003747 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN1123 transporter, LysE family; lysine exporter protein LysE/YggA 5003148..5003747 Pseudomonas putida GB-1 5872280 YP_001670697.1 CDS PputGB1_4473 NC_010322.1 5003986 5004582 D PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1121 superoxide dismutase; superoxide dismutase 5003986..5004582 Pseudomonas putida GB-1 5872281 YP_001670698.1 CDS PputGB1_4474 NC_010322.1 5004854 5006905 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN1120 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain); diguanylate cyclase/phosphodiesterase 5004854..5006905 Pseudomonas putida GB-1 5872282 YP_001670699.1 CDS PputGB1_4475 NC_010322.1 5007064 5008401 D KEGG: pen:PSEEN1119 hypothetical protein; hypothetical protein 5007064..5008401 Pseudomonas putida GB-1 5872283 YP_001670700.1 CDS PputGB1_4476 NC_010322.1 5008610 5010037 D PFAM: protein of unknown function DUF1111; KEGG: pen:PSEEN1117 hypothetical protein; hypothetical protein 5008610..5010037 Pseudomonas putida GB-1 5872284 YP_001670701.1 CDS PputGB1_4477 NC_010322.1 5010058 5011122 D KEGG: pen:PSEEN1116 lipoprotein; lipoprotein 5010058..5011122 Pseudomonas putida GB-1 5872285 YP_001670702.1 CDS PputGB1_4478 NC_010322.1 5011125 5012222 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1115 hypothetical protein; hypothetical protein 5011125..5012222 Pseudomonas putida GB-1 5872286 YP_001670703.1 CDS PputGB1_4481 NC_010322.1 5013615 5016659 D MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 5013615..5016659 Pseudomonas putida GB-1 5872288 YP_001670704.1 CDS PputGB1_4482 NC_010322.1 5016781 5017014 R KEGG: pen:PSEEN4454 hypothetical protein; hypothetical protein complement(5016781..5017014) Pseudomonas putida GB-1 5872289 YP_001670705.1 CDS PputGB1_4483 NC_010322.1 5017014 5017712 R PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN4455 lipopolysaccharide kinase InaA; lipopolysaccharide kinase complement(5017014..5017712) Pseudomonas putida GB-1 5872290 YP_001670706.1 CDS PputGB1_4484 NC_010322.1 5017719 5018399 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4456 hypothetical protein; type 11 methyltransferase complement(5017719..5018399) Pseudomonas putida GB-1 5872291 YP_001670707.1 CDS PputGB1_4485 NC_010322.1 5018507 5019817 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4457 sensor histidine kinase ColS; integral membrane sensor signal transduction histidine kinase complement(5018507..5019817) Pseudomonas putida GB-1 5872292 YP_001670708.1 CDS PputGB1_4486 NC_010322.1 5019807 5020490 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4458 response regulator ColR; two component transcriptional regulator complement(5019807..5020490) Pseudomonas putida GB-1 5872293 YP_001670709.1 CDS PputGB1_4487 NC_010322.1 5020674 5021402 D KEGG: pen:PSEEN4459 hypothetical protein; hypothetical protein 5020674..5021402 Pseudomonas putida GB-1 5872294 YP_001670710.1 CDS groEL NC_010322.1 5021555 5023198 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(5021555..5023198) Pseudomonas putida GB-1 5872295 YP_001670711.1 CDS groES NC_010322.1 5023247 5023540 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(5023247..5023540) Pseudomonas putida GB-1 5872296 YP_001670712.1 CDS fxsA NC_010322.1 5023783 5024244 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein complement(5023783..5024244) Pseudomonas putida GB-1 5872297 YP_001670713.1 CDS PputGB1_4491 NC_010322.1 5024310 5025140 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN4463 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(5024310..5025140) Pseudomonas putida GB-1 5872298 YP_001670714.1 CDS PputGB1_4492 NC_010322.1 5025194 5026204 R KEGG: pen:PSEEN4464 hypothetical protein; hypothetical protein complement(5025194..5026204) Pseudomonas putida GB-1 5872299 YP_001670715.1 CDS PputGB1_4493 NC_010322.1 5026357 5026710 D PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN4465 methylated DNA-protein cysteine methyltransferase; methylated-DNA-(protein)-cysteine S-methyltransferase 5026357..5026710 Pseudomonas putida GB-1 5872300 YP_001670716.1 CDS PputGB1_4494 NC_010322.1 5026754 5028301 D TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4466 muropeptide permease AmpG; AmpG-related permease 5026754..5028301 Pseudomonas putida GB-1 5872301 YP_001670717.1 CDS PputGB1_4495 NC_010322.1 5028369 5029613 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4467 multidrug efflux MFS transporter; major facilitator superfamily transporter complement(5028369..5029613) Pseudomonas putida GB-1 5872302 YP_001670718.1 CDS PputGB1_4496 NC_010322.1 5029726 5030568 R PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN4468 ion small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS complement(5029726..5030568) Pseudomonas putida GB-1 5872303 YP_001670719.1 CDS PputGB1_4497 NC_010322.1 5030683 5031168 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(5030683..5031168) Pseudomonas putida GB-1 5872304 YP_001670720.1 CDS PputGB1_4498 NC_010322.1 5031269 5032186 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 5031269..5032186 Pseudomonas putida GB-1 5872305 YP_001670721.1 CDS PputGB1_4499 NC_010322.1 5032224 5034248 D KEGG: pen:PSEEN4472 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 5032224..5034248 Pseudomonas putida GB-1 5872306 YP_001670722.1 CDS PputGB1_4500 NC_010322.1 5034250 5034816 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pen:PSEEN4473 Cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP--cobalamin adenosyltransferase 5034250..5034816 Pseudomonas putida GB-1 5872307 YP_001670723.1 CDS PputGB1_4501 NC_010322.1 5034947 5035891 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pen:PSEEN4474 hydrolase MutT/NUDIX family/thiamine monophosphate synthase; hypothetical protein complement(5034947..5035891) Pseudomonas putida GB-1 5872308 YP_001670724.1 CDS PputGB1_4502 NC_010322.1 5035888 5036520 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4475 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(5035888..5036520) Pseudomonas putida GB-1 5872309 YP_001670725.1 CDS argJ NC_010322.1 5036651 5037868 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(5036651..5037868) Pseudomonas putida GB-1 5872310 YP_001670726.1 CDS secA NC_010322.1 5038063 5040798 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(5038063..5040798) Pseudomonas putida GB-1 5872311 YP_001670727.1 CDS PputGB1_4505 NC_010322.1 5041100 5041555 D KEGG: pen:PSEEN4478 hypothetical protein; hypothetical protein 5041100..5041555 Pseudomonas putida GB-1 5872312 YP_001670728.1 CDS lpxC NC_010322.1 5041609 5042520 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(5041609..5042520) Pseudomonas putida GB-1 5872313 YP_001670729.1 CDS PputGB1_4507 NC_010322.1 5042633 5043829 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(5042633..5043829) Pseudomonas putida GB-1 5872314 YP_001670730.1 CDS PputGB1_4508 NC_010322.1 5043885 5045147 R PFAM: cell division protein FtsA; KEGG: pen:PSEEN4481 cell division protein FtsA; cell division protein FtsA complement(5043885..5045147) Pseudomonas putida GB-1 5872315 YP_001670731.1 CDS PputGB1_4509 NC_010322.1 5045162 5046031 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pen:PSEEN4482 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(5045162..5046031) Pseudomonas putida GB-1 5872316 YP_001670732.1 CDS ddl NC_010322.1 5046037 5046993 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(5046037..5046993) Pseudomonas putida GB-1 5872317 YP_001670733.1 CDS murC NC_010322.1 5046990 5048438 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(5046990..5048438) Pseudomonas putida GB-1 5872318 YP_001670734.1 CDS murG NC_010322.1 5048431 5049510 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(5048431..5049510) Pseudomonas putida GB-1 5872319 YP_001670735.1 CDS PputGB1_4513 NC_010322.1 5049500 5050714 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pen:PSEEN4486 cell division protein, stabililzes FtsZ ring; cell division protein FtsW complement(5049500..5050714) Pseudomonas putida GB-1 5872320 YP_001670736.1 CDS murD NC_010322.1 5050711 5052063 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(5050711..5052063) Pseudomonas putida GB-1 5872321 YP_001670737.1 CDS mraY NC_010322.1 5052064 5053146 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(5052064..5053146) Pseudomonas putida GB-1 5872322 YP_001670738.1 CDS PputGB1_4516 NC_010322.1 5053146 5054513 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN4489 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme); UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(5053146..5054513) Pseudomonas putida GB-1 5872323 YP_001670739.1 CDS murE NC_010322.1 5054506 5055996 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(5054506..5055996) Pseudomonas putida GB-1 5872324 YP_001670740.1 CDS PputGB1_4518 NC_010322.1 5055993 5057744 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pen:PSEEN4491 penicillin-binding protein; peptidoglycan glycosyltransferase complement(5055993..5057744) Pseudomonas putida GB-1 5872325 YP_001670741.1 CDS PputGB1_4519 NC_010322.1 5057741 5058034 R PFAM: cell division protein FtsL; KEGG: pen:PSEEN4492 cell division protein FtsL; cell division protein FtsL complement(5057741..5058034) Pseudomonas putida GB-1 5872326 YP_001670742.1 CDS mraW NC_010322.1 5058031 5058978 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pen:PSEEN4493 S-adenosylmethionine methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(5058031..5058978) Pseudomonas putida GB-1 5872327 YP_001670743.1 CDS PputGB1_4521 NC_010322.1 5058975 5059430 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(5058975..5059430) Pseudomonas putida GB-1 5872328 YP_001670744.1 CDS PputGB1_4522 NC_010322.1 5060180 5061055 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN4495 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase complement(5060180..5061055) Pseudomonas putida GB-1 5872330 YP_001670745.1 CDS PputGB1_4523 NC_010322.1 5061242 5063059 D PFAM: LppC family lipoprotein; KEGG: pen:PSEEN4496 lipoprotein LppC; LppC family lipoprotein 5061242..5063059 Pseudomonas putida GB-1 5872331 YP_001670746.1 CDS PputGB1_4524 NC_010322.1 5063059 5063430 D PFAM: protein of unknown function UPF0102; KEGG: pen:PSEEN4497 hypothetical protein; hypothetical protein 5063059..5063430 Pseudomonas putida GB-1 5872332 YP_001670747.1 CDS PputGB1_4525 NC_010322.1 5063517 5064110 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 5063517..5064110 Pseudomonas putida GB-1 5872333 YP_001670748.1 CDS PputGB1_4526 NC_010322.1 5064107 5064685 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN4499 lipoprotein; transport-associated 5064107..5064685 Pseudomonas putida GB-1 5872334 YP_001670749.1 CDS PputGB1_4527 NC_010322.1 5064807 5065025 D PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN4500 hypothetical protein; hypothetical protein 5064807..5065025 Pseudomonas putida GB-1 5872335 YP_001670750.1 CDS PputGB1_4528 NC_010322.1 5065076 5065507 R PFAM: Stringent starvation protein B; KEGG: pen:PSEEN4501 stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(5065076..5065507) Pseudomonas putida GB-1 5872336 YP_001670751.1 CDS PputGB1_4529 NC_010322.1 5065518 5066141 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4502 stringent starvation protein A; glutathione S-transferase domain-containing protein complement(5065518..5066141) Pseudomonas putida GB-1 5872337 YP_001670752.1 CDS PputGB1_4530 NC_010322.1 5066259 5067038 R KEGG: pen:PSEEN4503 ubiquinol--cytochrome c reductase, cytochrome c1; ubiquinol--cytochrome c reductase, cytochrome c1 complement(5066259..5067038) Pseudomonas putida GB-1 5872338 YP_001670753.1 CDS PputGB1_4531 NC_010322.1 5067038 5068252 R PFAM: Cytochrome b/b6 domain; KEGG: pen:PSEEN4504 ubiquinol--cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein complement(5067038..5068252) Pseudomonas putida GB-1 5872339 YP_001670754.1 CDS PputGB1_4532 NC_010322.1 5068249 5068842 R KEGG: pen:PSEEN4505 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(5068249..5068842) Pseudomonas putida GB-1 5872340 YP_001670755.1 CDS rpsI NC_010322.1 5069105 5069497 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(5069105..5069497) Pseudomonas putida GB-1 5872341 YP_001670756.1 CDS rplM NC_010322.1 5069512 5069940 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(5069512..5069940) Pseudomonas putida GB-1 5872342 YP_001670757.1 CDS PputGB1_4535 NC_010322.1 5070199 5071239 D PFAM: aldo/keto reductase; KEGG: pen:PSEEN4508 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 5070199..5071239 Pseudomonas putida GB-1 5872343 YP_001670758.1 CDS PputGB1_4536 NC_010322.1 5071335 5072339 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4509 transcriptional regulator, AraC family; AraC family transcriptional regulator 5071335..5072339 Pseudomonas putida GB-1 5872344 YP_001670759.1 CDS PputGB1_4537 NC_010322.1 5072371 5073465 R PFAM: AFG1-family ATPase; KEGG: pen:PSEEN4510 ATPase; AFG1 family ATPase complement(5072371..5073465) Pseudomonas putida GB-1 5872345 YP_001670760.1 CDS PputGB1_4538 NC_010322.1 5073550 5074899 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(5073550..5074899) Pseudomonas putida GB-1 5872346 YP_001670761.1 CDS PputGB1_4539 NC_010322.1 5074925 5075560 R KEGG: pen:PSEEN4512 hypothetical protein; hypothetical protein complement(5074925..5075560) Pseudomonas putida GB-1 5872347 YP_001670762.1 CDS PputGB1_4540 NC_010322.1 5075696 5076133 D PFAM: protein of unknown function DUF1043; KEGG: pen:PSEEN4513 hypothetical protein; hypothetical protein 5075696..5076133 Pseudomonas putida GB-1 5872348 YP_001670763.1 CDS PputGB1_4541 NC_010322.1 5076193 5077389 R catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase complement(5076193..5077389) Pseudomonas putida GB-1 5872349 YP_001670764.1 CDS PputGB1_4542 NC_010322.1 5077517 5077996 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4516 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5077517..5077996 Pseudomonas putida GB-1 5872350 YP_001670765.1 CDS PputGB1_4543 NC_010322.1 5078111 5078431 D KEGG: pfo:Pfl_4761 S-type pyocin; S-type pyocin 5078111..5078431 Pseudomonas putida GB-1 5872351 YP_001670766.1 CDS PputGB1_4544 NC_010322.1 5078428 5078685 D PFAM: Colicin immunity protein/pyocin immunity protein; KEGG: cko:CKO_02443 hypothetical protein; colicin immunity protein/pyocin immunity protein 5078428..5078685 Pseudomonas putida GB-1 5872352 YP_001670767.1 CDS PputGB1_4545 NC_010322.1 5078779 5080680 R in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase complement(5078779..5080680) Pseudomonas putida GB-1 5872353 YP_001670768.1 CDS PputGB1_4546 NC_010322.1 5080697 5081614 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(5080697..5081614) Pseudomonas putida GB-1 5872354 YP_001670769.1 CDS PputGB1_4547 NC_010322.1 5081813 5082571 R PFAM: protein of unknown function DUF34; KEGG: pen:PSEEN4520 hypothetical protein; hypothetical protein complement(5081813..5082571) Pseudomonas putida GB-1 5872355 YP_001670770.1 CDS PputGB1_4548 NC_010322.1 5082740 5083900 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pen:PSEEN4521 HtrA-like serine protease AlgW; 2-alkenal reductase 5082740..5083900 Pseudomonas putida GB-1 5872356 YP_001670771.1 CDS PputGB1_4549 NC_010322.1 5083931 5084695 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4522 general amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5083931..5084695) Pseudomonas putida GB-1 5872357 YP_001670772.1 CDS PputGB1_4550 NC_010322.1 5084706 5085803 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4523 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(5084706..5085803) Pseudomonas putida GB-1 5872358 YP_001670773.1 CDS PputGB1_4551 NC_010322.1 5085814 5086992 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4524 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(5085814..5086992) Pseudomonas putida GB-1 5872359 YP_001670774.1 CDS PputGB1_4552 NC_010322.1 5087060 5088088 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN4525 general amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(5087060..5088088) Pseudomonas putida GB-1 5872360 YP_001670775.1 CDS PputGB1_4553 NC_010322.1 5088421 5089077 D PFAM: phospholipase/Carboxylesterase; KEGG: pen:PSEEN4526 carboxylesterase; carboxylesterase 5088421..5089077 Pseudomonas putida GB-1 5872361 YP_001670776.1 CDS PputGB1_4554 NC_010322.1 5089179 5090648 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 5089179..5090648 Pseudomonas putida GB-1 5872362 YP_001670777.1 CDS PputGB1_4555 NC_010322.1 5090812 5091258 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pen:PSEEN4528 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis protein MoaE complement(5090812..5091258) Pseudomonas putida GB-1 5872363 YP_001670778.1 CDS PputGB1_4556 NC_010322.1 5091261 5091506 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: pen:PSEEN4529 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 complement(5091261..5091506) Pseudomonas putida GB-1 5872364 YP_001670779.1 CDS moaC NC_010322.1 5091506 5091976 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(5091506..5091976) Pseudomonas putida GB-1 5872365 YP_001670780.1 CDS PputGB1_4558 NC_010322.1 5092083 5093477 R PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pen:PSEEN4531 PhoH family protein; PhoH family protein complement(5092083..5093477) Pseudomonas putida GB-1 5872366 YP_001670781.1 CDS PputGB1_4559 NC_010322.1 5093759 5094886 R PFAM: polysaccharide deacetylase; KEGG: pen:PSEEN4533 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(5093759..5094886) Pseudomonas putida GB-1 5872367 YP_001670782.1 CDS PputGB1_4560 NC_010322.1 5095024 5095803 D PFAM: protein of unknown function DUF328; KEGG: pen:PSEEN4534 hypothetical protein; hypothetical protein 5095024..5095803 Pseudomonas putida GB-1 5872368 YP_001670783.1 CDS PputGB1_4561 NC_010322.1 5096608 5097924 D KEGG: pen:PSEEN4535 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; GDP-mannose 6-dehydrogenase 5096608..5097924 Pseudomonas putida GB-1 5872369 YP_001670784.1 CDS PputGB1_4562 NC_010322.1 5097991 5099481 D KEGG: pen:PSEEN4536 glycosyl transferase Alg8; glycosyl transferase Alg8 5097991..5099481 Pseudomonas putida GB-1 5872370 YP_001670785.1 CDS PputGB1_4563 NC_010322.1 5099519 5100685 D PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN4537 alginate biosynthesis protein Alg44; type IV pilus assembly PilZ 5099519..5100685 Pseudomonas putida GB-1 5872371 YP_001670786.1 CDS PputGB1_4564 NC_010322.1 5100698 5102248 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4538 alginate biosynthesis precursor AlgK; Sel1 domain-containing protein 5100698..5102248 Pseudomonas putida GB-1 5872372 YP_001670787.1 CDS PputGB1_4565 NC_010322.1 5102245 5103723 D KEGG: pen:PSEEN4539 outer membrane protein AlgE; outer membrane protein AlgE 5102245..5103723 Pseudomonas putida GB-1 5872373 YP_001670788.1 CDS PputGB1_4566 NC_010322.1 5103746 5105305 D SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pen:PSEEN4540 alginate-C5-mannuronan-epimerase AlgG; carbohydrate-binding and sugar hydrolysis protein 5103746..5105305 Pseudomonas putida GB-1 5872374 YP_001670789.1 CDS PputGB1_4567 NC_010322.1 5105319 5106758 D KEGG: pen:PSEEN4541 alginate biosynthesis protein AlgX; alginate biosynthesis protein AlgX 5105319..5106758 Pseudomonas putida GB-1 5872375 YP_001670790.1 CDS algL NC_010322.1 5106767 5107870 D Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 5106767..5107870 Pseudomonas putida GB-1 5872376 YP_001670791.1 CDS PputGB1_4569 NC_010322.1 5108000 5109457 D PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pen:PSEEN4543 alginate O-acetylation protein AlgI; membrane bound O-acyl transferase MBOAT family protein 5108000..5109457 Pseudomonas putida GB-1 5872377 YP_001670792.1 CDS PputGB1_4570 NC_010322.1 5109468 5110625 D KEGG: pen:PSEEN4544 alginate O-acetylation protein AlgJ precursor; alginate O-acetylation protein AlgJ 5109468..5110625 Pseudomonas putida GB-1 5872378 YP_001670793.1 CDS PputGB1_4571 NC_010322.1 5110646 5111293 D KEGG: pen:PSEEN4545 alginate O-acetyltransferase AlgF; alginate O-acetyltransferase AlgF 5110646..5111293 Pseudomonas putida GB-1 5872379 YP_001670794.1 CDS PputGB1_4572 NC_010322.1 5111325 5112782 D KEGG: pen:PSEEN4546 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 5111325..5112782 Pseudomonas putida GB-1 5872380 YP_001670795.1 CDS PputGB1_4573 NC_010322.1 5112907 5113371 D KEGG: pen:PSEEN4547 hypothetical protein; hypothetical protein 5112907..5113371 Pseudomonas putida GB-1 5872381 YP_001670796.1 CDS PputGB1_4574 NC_010322.1 5113387 5114199 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4551 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 5113387..5114199 Pseudomonas putida GB-1 5872382 YP_001670797.1 CDS PputGB1_4575 NC_010322.1 5114322 5115773 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4552 multidrug efflux MFS outer membrane protein; RND efflux system outer membrane lipoprotein complement(5114322..5115773) Pseudomonas putida GB-1 5872383 YP_001670798.1 CDS PputGB1_4576 NC_010322.1 5115770 5116831 R PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4553 multidrug efflux MFS membrane fusion protein; secretion protein HlyD family protein complement(5115770..5116831) Pseudomonas putida GB-1 5872384 YP_001670799.1 CDS PputGB1_4577 NC_010322.1 5116860 5118401 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4554 multidrug efflux MFS transporter; major facilitator superfamily transporter complement(5116860..5118401) Pseudomonas putida GB-1 5872385 YP_001670800.1 CDS PputGB1_4578 NC_010322.1 5118518 5119423 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4555 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5118518..5119423) Pseudomonas putida GB-1 5872386 YP_001670801.1 CDS PputGB1_4579 NC_010322.1 5119633 5120082 D PFAM: UspA domain protein; KEGG: pen:PSEEN4556 universal stress protein family; UspA domain-containing protein 5119633..5120082 Pseudomonas putida GB-1 5872387 YP_001670802.1 CDS PputGB1_4580 NC_010322.1 5120212 5121072 R PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4557 HlyD family secretion protein; secretion protein HlyD family protein complement(5120212..5121072) Pseudomonas putida GB-1 5872388 YP_001670803.1 CDS PputGB1_4581 NC_010322.1 5121083 5121283 R PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN4558 hypothetical protein; hypothetical protein complement(5121083..5121283) Pseudomonas putida GB-1 5872389 YP_001670804.1 CDS PputGB1_4582 NC_010322.1 5121273 5123450 R PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN4559 fusaric acid resistance protein; fusaric acid resistance protein region complement(5121273..5123450) Pseudomonas putida GB-1 5872390 YP_001670805.1 CDS PputGB1_4583 NC_010322.1 5123447 5124976 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4560 fusaric acid resistance protein; RND efflux system outer membrane lipoprotein complement(5123447..5124976) Pseudomonas putida GB-1 5872391 YP_001670806.1 CDS PputGB1_4584 NC_010322.1 5125168 5126115 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4561 transcriptional regulator, LysR family; LysR family transcriptional regulator 5125168..5126115 Pseudomonas putida GB-1 5872392 YP_001670807.1 CDS PputGB1_4585 NC_010322.1 5126194 5127168 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4562 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 5126194..5127168 Pseudomonas putida GB-1 5872393 YP_001670808.1 CDS PputGB1_4586 NC_010322.1 5127281 5128183 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4563 hypothetical protein; hypothetical protein complement(5127281..5128183) Pseudomonas putida GB-1 5872394 YP_001670809.1 CDS PputGB1_4587 NC_010322.1 5128369 5129244 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4564 transcriptional regulator, AraC family; AraC family transcriptional regulator 5128369..5129244 Pseudomonas putida GB-1 5872395 YP_001670810.1 CDS PputGB1_4588 NC_010322.1 5129317 5131707 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4565 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5129317..5131707) Pseudomonas putida GB-1 5872396 YP_001670811.1 CDS PputGB1_4589 NC_010322.1 5131837 5132817 R PFAM: FecR protein; KEGG: pen:PSEEN4566 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(5131837..5132817) Pseudomonas putida GB-1 5872397 YP_001670812.1 CDS PputGB1_4590 NC_010322.1 5132814 5133389 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4567 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(5132814..5133389) Pseudomonas putida GB-1 5872398 YP_001670813.1 CDS PputGB1_4591 NC_010322.1 5133394 5133720 R KEGG: pen:PSEEN4568 hypothetical protein; hypothetical protein complement(5133394..5133720) Pseudomonas putida GB-1 5872399 YP_001670814.1 CDS PputGB1_4592 NC_010322.1 5133720 5135297 R PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4569 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(5133720..5135297) Pseudomonas putida GB-1 5872400 YP_001670815.1 CDS PputGB1_4593 NC_010322.1 5135294 5135599 R KEGG: pen:PSEEN4570 hypothetical protein; hypothetical protein complement(5135294..5135599) Pseudomonas putida GB-1 5872401 YP_001670816.1 CDS PputGB1_4594 NC_010322.1 5135757 5136251 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this protein may be involved in ferric dicitrate uptake; RNA polymerase sigma factor 5135757..5136251 Pseudomonas putida GB-1 5872402 YP_001670817.1 CDS PputGB1_4595 NC_010322.1 5136248 5137174 D PFAM: FecR protein; KEGG: pen:PSEEN4572 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5136248..5137174 Pseudomonas putida GB-1 5872403 YP_001670818.1 CDS PputGB1_4596 NC_010322.1 5137264 5139588 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4573 Fe(III) dicitrate transport protein FecA; TonB-dependent siderophore receptor 5137264..5139588 Pseudomonas putida GB-1 5872404 YP_001670819.1 CDS PputGB1_4597 NC_010322.1 5139766 5140113 D KEGG: pen:PSEEN4601 hypothetical protein; hypothetical protein 5139766..5140113 Pseudomonas putida GB-1 5872405 YP_001670820.1 CDS PputGB1_4598 NC_010322.1 5140235 5140525 D KEGG: pen:PSEEN4602 hypothetical protein; hypothetical protein 5140235..5140525 Pseudomonas putida GB-1 5872406 YP_001670821.1 CDS PputGB1_4599 NC_010322.1 5140529 5140999 R PFAM: phosphate-starvation-inducible E; KEGG: pen:PSEEN4603 hypothetical protein; phosphate-starvation-inducible E complement(5140529..5140999) Pseudomonas putida GB-1 5872407 YP_001670822.1 CDS PputGB1_4600 NC_010322.1 5141231 5141494 D PFAM: YebG family protein; KEGG: pen:PSEEN4605 hypothetical protein; hypothetical protein 5141231..5141494 Pseudomonas putida GB-1 5872408 YP_001670823.1 CDS PputGB1_4601 NC_010322.1 5141556 5142575 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: pen:PSEEN4606 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(5141556..5142575) Pseudomonas putida GB-1 5872409 YP_001670824.1 CDS PputGB1_4602 NC_010322.1 5142700 5143506 D KEGG: pen:PSEEN4608 hypothetical protein; hypothetical protein 5142700..5143506 Pseudomonas putida GB-1 5872410 YP_001670825.1 CDS PputGB1_4603 NC_010322.1 5143500 5144132 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4610 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(5143500..5144132) Pseudomonas putida GB-1 5872411 YP_001670826.1 CDS PputGB1_4604 NC_010322.1 5144145 5145437 R KEGG: pen:PSEEN4611 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase complement(5144145..5145437) Pseudomonas putida GB-1 5872412 YP_001670827.1 CDS PputGB1_4605 NC_010322.1 5145441 5146742 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(5145441..5146742) Pseudomonas putida GB-1 5872413 YP_001670828.1 CDS PputGB1_4606 NC_010322.1 5146911 5147699 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN4613 transcriptional regulator, IclR family; IclR family transcriptional regulator 5146911..5147699 Pseudomonas putida GB-1 5872414 YP_001670829.1 CDS PputGB1_4607 NC_010322.1 5147927 5148841 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4615 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(5147927..5148841) Pseudomonas putida GB-1 5872415 YP_001670830.1 CDS PputGB1_4608 NC_010322.1 5148956 5149861 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4616 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(5148956..5149861) Pseudomonas putida GB-1 5872416 YP_001670831.1 CDS PputGB1_4609 NC_010322.1 5150038 5150724 R PFAM: LrgB family protein; KEGG: pen:PSEEN4617 effector of murein hydrolase LgrB; LrgB family protein complement(5150038..5150724) Pseudomonas putida GB-1 5872417 YP_001670832.1 CDS PputGB1_4610 NC_010322.1 5150714 5151100 R PFAM: LrgA family protein; KEGG: pen:PSEEN4618 murein hydrolase transporter LgrA; LrgA family protein complement(5150714..5151100) Pseudomonas putida GB-1 5872418 YP_001670833.1 CDS PputGB1_4611 NC_010322.1 5151197 5152078 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4619 transcriptional regulator, LysR family; LysR family transcriptional regulator 5151197..5152078 Pseudomonas putida GB-1 5872419 YP_001670834.1 CDS PputGB1_4612 NC_010322.1 5152113 5152568 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(5152113..5152568) Pseudomonas putida GB-1 5872420 YP_001670835.1 CDS PputGB1_4613 NC_010322.1 5152695 5153123 D KEGG: pfl:PFL_0954 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 5152695..5153123 Pseudomonas putida GB-1 5872421 YP_001670836.1 CDS PputGB1_4614 NC_010322.1 5153183 5153800 D KEGG: pen:PSEEN4621 hypothetical protein; hypothetical protein 5153183..5153800 Pseudomonas putida GB-1 5872422 YP_001670837.1 CDS PputGB1_4615 NC_010322.1 5153785 5154720 R PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(5153785..5154720) Pseudomonas putida GB-1 5872423 YP_001670838.1 CDS PputGB1_4616 NC_010322.1 5154939 5155499 D KEGG: pen:PSEEN4622 hypothetical protein; hypothetical protein 5154939..5155499 Pseudomonas putida GB-1 5872424 YP_001670839.1 CDS PputGB1_4617 NC_010322.1 5155533 5156270 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4623 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 5155533..5156270 Pseudomonas putida GB-1 5872425 YP_001670840.1 CDS PputGB1_4618 NC_010322.1 5156280 5156576 D PFAM: protein of unknown function DUF1244; KEGG: pen:PSEEN4624 hypothetical protein; hypothetical protein 5156280..5156576 Pseudomonas putida GB-1 5872426 YP_001670841.1 CDS PputGB1_4619 NC_010322.1 5156569 5156910 D PFAM: HopJ type III effector protein; KEGG: pen:PSEEN4625 type III effector HopPmaJ; HopJ type III effector protein 5156569..5156910 Pseudomonas putida GB-1 5872427 YP_001670842.1 CDS PputGB1_4620 NC_010322.1 5157010 5157912 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4626 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(5157010..5157912) Pseudomonas putida GB-1 5872428 YP_001670843.1 CDS PputGB1_4621 NC_010322.1 5158018 5159229 R enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase complement(5158018..5159229) Pseudomonas putida GB-1 5872429 YP_001670844.1 CDS PputGB1_4622 NC_010322.1 5159377 5160231 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4628 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5159377..5160231) Pseudomonas putida GB-1 5872430 YP_001670845.1 CDS PputGB1_4623 NC_010322.1 5160367 5161407 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN4629 peptidylarginine deiminase, PPADH family; agmatine deiminase 5160367..5161407 Pseudomonas putida GB-1 5872431 YP_001670846.1 CDS PputGB1_4624 NC_010322.1 5161404 5162300 D TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN4630 carbon-nitrogen hydrolase; N-carbamoylputrescine amidase 5161404..5162300 Pseudomonas putida GB-1 5872432 YP_001670847.1 CDS PputGB1_4625 NC_010322.1 5162303 5163388 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4631 periplasmic polyamine-binding protein; extracellular solute-binding protein 5162303..5163388 Pseudomonas putida GB-1 5872433 YP_001670848.1 CDS PputGB1_4626 NC_010322.1 5163392 5164501 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pen:PSEEN4632 peptidylarginine deiminase, PPADH family; agmatine deiminase 5163392..5164501 Pseudomonas putida GB-1 5872434 YP_001670849.1 CDS PputGB1_4627 NC_010322.1 5164523 5165041 R PFAM: cytochrome B561; KEGG: pen:PSEEN4633 cytochrome b561 family protein; cytochrome B561 complement(5164523..5165041) Pseudomonas putida GB-1 5872435 YP_001670850.1 CDS PputGB1_4628 NC_010322.1 5165053 5165319 R KEGG: pen:PSEEN4634 hypothetical protein; hypothetical protein complement(5165053..5165319) Pseudomonas putida GB-1 5872436 YP_001670851.1 CDS PputGB1_4629 NC_010322.1 5165495 5166673 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5165495..5166673 Pseudomonas putida GB-1 5872437 YP_001670852.1 CDS PputGB1_4630 NC_010322.1 5166758 5167477 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4636 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(5166758..5167477) Pseudomonas putida GB-1 5872438 YP_001670853.1 CDS PputGB1_4631 NC_010322.1 5167545 5168345 R PFAM: Cobalamin-independent synthase MetE domain protein; KEGG: pen:PSEEN4639 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(5167545..5168345) Pseudomonas putida GB-1 5872439 YP_001670854.1 CDS PputGB1_4632 NC_010322.1 5168554 5170041 D PFAM: methylenetetrahydrofolate reductase; KEGG: pen:PSEEN4641 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 5168554..5170041 Pseudomonas putida GB-1 5872440 YP_001670855.1 CDS PputGB1_4633 NC_010322.1 5170001 5170978 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN0805 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K complement(5170001..5170978) Pseudomonas putida GB-1 5872441 YP_001670856.1 CDS PputGB1_4634 NC_010322.1 5171057 5171254 R PFAM: protein of unknown function DUF466; KEGG: pen:PSEEN0804 hypothetical protein; hypothetical protein complement(5171057..5171254) Pseudomonas putida GB-1 5872442 YP_001670857.1 CDS PputGB1_4635 NC_010322.1 5171272 5173338 R PFAM: carbon starvation protein CstA; KEGG: pen:PSEEN0803 carbon starvation protein CstA; carbon starvation protein CstA complement(5171272..5173338) Pseudomonas putida GB-1 5872443 YP_001670858.1 CDS PputGB1_4636 NC_010322.1 5173516 5173881 D PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN0802 hypothetical protein; type IV pilus assembly PilZ 5173516..5173881 Pseudomonas putida GB-1 5872444 YP_001670859.1 CDS PputGB1_4637 NC_010322.1 5174145 5175662 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0801 xanthine/uracil permease; xanthine permease 5174145..5175662 Pseudomonas putida GB-1 5872445 YP_001670860.1 CDS PputGB1_4638 NC_010322.1 5175770 5177140 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(5175770..5177140) Pseudomonas putida GB-1 5872446 YP_001670861.1 CDS mscL NC_010322.1 5177317 5177736 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 5177317..5177736 Pseudomonas putida GB-1 5872447 YP_001670862.1 CDS PputGB1_4640 NC_010322.1 5177770 5178606 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase NAD binding; KEGG: pen:PSEEN4772 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(5177770..5178606) Pseudomonas putida GB-1 5872448 YP_001670863.1 CDS PputGB1_4641 NC_010322.1 5178757 5179464 D PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: pen:PSEEN4773 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 5178757..5179464 Pseudomonas putida GB-1 5872449 YP_001670864.1 CDS PputGB1_4642 NC_010322.1 5179561 5180685 D PFAM: methyltransferase small; KEGG: pen:PSEEN4774 nucleotide methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 5179561..5180685 Pseudomonas putida GB-1 5872450 YP_001670865.1 CDS PputGB1_4643 NC_010322.1 5180803 5180958 R KEGG: pen:PSEEN4775 hypothetical protein; hypothetical protein complement(5180803..5180958) Pseudomonas putida GB-1 5872451 YP_001670866.1 CDS PputGB1_4644 NC_010322.1 5180968 5181975 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: pen:PSEEN4776 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II complement(5180968..5181975) Pseudomonas putida GB-1 5872452 YP_001670867.1 CDS PputGB1_4645 NC_010322.1 5181979 5183415 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I complement(5181979..5183415) Pseudomonas putida GB-1 5872453 YP_001670868.1 CDS PputGB1_4646 NC_010322.1 5183760 5184989 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4778 transporter, MFS family; major facilitator superfamily transporter 5183760..5184989 Pseudomonas putida GB-1 5872454 YP_001670869.1 CDS PputGB1_4647 NC_010322.1 5185015 5185494 R PFAM: GCN5-related N-acetyltransferase; KEGG: pst:PSPTO_3654 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(5185015..5185494) Pseudomonas putida GB-1 5872455 YP_001670870.1 CDS PputGB1_4648 NC_010322.1 5185694 5186989 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4779 transporter; xanthine/uracil/vitamin C permease 5185694..5186989 Pseudomonas putida GB-1 5872456 YP_001670871.1 CDS PputGB1_4649 NC_010322.1 5186986 5188071 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 5186986..5188071 Pseudomonas putida GB-1 5872457 YP_001670872.1 CDS PputGB1_4650 NC_010322.1 5188115 5188720 R KEGG: pen:PSEEN4783 protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD); TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha complement(5188115..5188720) Pseudomonas putida GB-1 5872458 YP_001670873.1 CDS PputGB1_4651 NC_010322.1 5188731 5189450 R TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pen:PSEEN4784 protocatechuate 3,4-dioxygenase beta chain (3,4-PCD); protocatechuate 3,4-dioxygenase subunit beta complement(5188731..5189450) Pseudomonas putida GB-1 5872459 YP_001670874.1 CDS PputGB1_4652 NC_010322.1 5189651 5190544 D PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: pen:PSEEN4786 zinc-dependent peptidase (neutral); hypothetical protein 5189651..5190544 Pseudomonas putida GB-1 5872460 YP_001670875.1 CDS PputGB1_4653 NC_010322.1 5190718 5192637 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0717 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5190718..5192637 Pseudomonas putida GB-1 5872461 YP_001670876.1 CDS PputGB1_4654 NC_010322.1 5192768 5194435 R KEGG: pen:PSEEN0716 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(5192768..5194435) Pseudomonas putida GB-1 5872462 YP_001670877.1 CDS PputGB1_4655 NC_010322.1 5194553 5195494 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0715 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5194553..5195494) Pseudomonas putida GB-1 5872463 YP_001670878.1 CDS PputGB1_4656 NC_010322.1 5195537 5196127 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN0714 probable nitroreductase or quinone reductase; NAD(P)H dehydrogenase (quinone) complement(5195537..5196127) Pseudomonas putida GB-1 5872464 YP_001670879.1 CDS PputGB1_4657 NC_010322.1 5196290 5196604 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN0713 hypothetical protein; antibiotic biosynthesis monooxygenase 5196290..5196604 Pseudomonas putida GB-1 5872465 YP_001670880.1 CDS PputGB1_4658 NC_010322.1 5196594 5197358 R PFAM: protein of unknown function DUF81; KEGG: pfl:PFL_0767 hypothetical protein; hypothetical protein complement(5196594..5197358) Pseudomonas putida GB-1 5872466 YP_001670881.1 CDS PputGB1_4659 NC_010322.1 5197437 5198318 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 5197437..5198318 Pseudomonas putida GB-1 5872467 YP_001670882.1 CDS PputGB1_4660 NC_010322.1 5198606 5198950 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN0704 hypothetical protein; hypothetical protein 5198606..5198950 Pseudomonas putida GB-1 5872468 YP_001670883.1 CDS PputGB1_4661 NC_010322.1 5199246 5199734 D TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 5199246..5199734 Pseudomonas putida GB-1 5872469 YP_001670884.1 CDS PputGB1_4662 NC_010322.1 5199745 5200722 D KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein 5199745..5200722 Pseudomonas putida GB-1 5872470 YP_001670885.1 CDS PputGB1_4663 NC_010322.1 5200779 5201078 D hypothetical protein 5200779..5201078 Pseudomonas putida GB-1 5872471 YP_001670886.1 CDS PputGB1_4664 NC_010322.1 5201216 5202103 R KEGG: pen:PSEEN0700 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(5201216..5202103) Pseudomonas putida GB-1 5872472 YP_001670887.1 CDS PputGB1_4665 NC_010322.1 5202113 5203639 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0699 methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein; methylmalonate-semialdehyde dehydrogenase complement(5202113..5203639) Pseudomonas putida GB-1 5872473 YP_001670888.1 CDS PputGB1_4666 NC_010322.1 5203772 5204722 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0698 transcriptional regulator, LysR family; LysR family transcriptional regulator 5203772..5204722 Pseudomonas putida GB-1 5872474 YP_001670889.1 CDS PputGB1_4667 NC_010322.1 5204754 5205245 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0697 outer membrane lipoprotein (OmpA domain); OmpA/MotB domain-containing protein complement(5204754..5205245) Pseudomonas putida GB-1 5872475 YP_001670890.1 CDS PputGB1_4668 NC_010322.1 5205250 5206521 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0696 hypothetical protein; diguanylate cyclase complement(5205250..5206521) Pseudomonas putida GB-1 5872476 YP_001670891.1 CDS PputGB1_4669 NC_010322.1 5206518 5207084 R KEGG: pen:PSEEN0695 hypothetical protein; hypothetical protein complement(5206518..5207084) Pseudomonas putida GB-1 5872477 YP_001670892.1 CDS PputGB1_4670 NC_010322.1 5207165 5209240 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pen:PSEEN0693 exonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(5207165..5209240) Pseudomonas putida GB-1 5872478 YP_001670893.1 CDS PputGB1_4671 NC_010322.1 5209237 5212911 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN0692 exonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(5209237..5212911) Pseudomonas putida GB-1 5872479 YP_001670894.1 CDS PputGB1_4672 NC_010322.1 5212908 5216387 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: pen:PSEEN0691 exonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(5212908..5216387) Pseudomonas putida GB-1 5872480 YP_001670895.1 CDS PputGB1_4673 NC_010322.1 5221996 5222607 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(5221996..5222607) Pseudomonas putida GB-1 5872484 YP_001670896.1 CDS PputGB1_4674 NC_010322.1 5222607 5223620 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(5222607..5223620) Pseudomonas putida GB-1 5872485 YP_001670897.1 CDS PputGB1_4675 NC_010322.1 5223700 5224551 R KEGG: pen:PSEEN4708 phosphatidylserine synthase PssA; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(5223700..5224551) Pseudomonas putida GB-1 5872486 YP_001670898.1 CDS PputGB1_4676 NC_010322.1 5224702 5225718 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(5224702..5225718) Pseudomonas putida GB-1 5872487 YP_001670899.1 CDS ilvH NC_010322.1 5225774 5226265 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(5225774..5226265) Pseudomonas putida GB-1 5872488 YP_001670900.1 CDS PputGB1_4678 NC_010322.1 5226267 5227991 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit complement(5226267..5227991) Pseudomonas putida GB-1 5872489 YP_001670901.1 CDS PputGB1_4679 NC_010322.1 5228402 5228734 R PFAM: protein of unknown function DUF446; KEGG: pen:PSEEN4713 hypothetical protein; hypothetical protein complement(5228402..5228734) Pseudomonas putida GB-1 5872490 YP_001670902.1 CDS PputGB1_4680 NC_010322.1 5228734 5229537 R KEGG: pen:PSEEN4714 hypothetical protein; hypothetical protein complement(5228734..5229537) Pseudomonas putida GB-1 5872491 YP_001670903.1 CDS PputGB1_4681 NC_010322.1 5229553 5231874 R KEGG: pen:PSEEN4715 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B complement(5229553..5231874) Pseudomonas putida GB-1 5872492 YP_001670904.1 CDS PputGB1_4682 NC_010322.1 5231990 5233552 D KEGG: pen:PSEEN4716 hypothetical protein; hypothetical protein 5231990..5233552 Pseudomonas putida GB-1 5872493 YP_001670905.1 CDS PputGB1_4683 NC_010322.1 5233729 5234007 D PFAM: TfoX domain protein; KEGG: pen:PSEEN4718 hypothetical protein; TfoX domain-containing protein 5233729..5234007 Pseudomonas putida GB-1 5872494 YP_001670906.1 CDS PputGB1_4684 NC_010322.1 5234189 5235073 R PFAM: protein of unknown function DUF399; KEGG: pen:PSEEN4719 hypothetical protein; hypothetical protein complement(5234189..5235073) Pseudomonas putida GB-1 5872495 YP_001670907.1 CDS hmuV NC_010322.1 5235086 5235853 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(5235086..5235853) Pseudomonas putida GB-1 5872496 YP_001670908.1 CDS PputGB1_4686 NC_010322.1 5235853 5236890 R PFAM: transport system permease protein; ABC-3 protein; KEGG: pen:PSEEN4721 ABC transporter, permease component; transport system permease complement(5235853..5236890) Pseudomonas putida GB-1 5872497 YP_001670909.1 CDS PputGB1_4687 NC_010322.1 5236887 5237771 R PFAM: periplasmic binding protein; KEGG: pen:PSEEN4722 ABC transporter, periplasmic binding protein; periplasmic binding protein complement(5236887..5237771) Pseudomonas putida GB-1 5872498 YP_001670910.1 CDS PputGB1_4688 NC_010322.1 5237920 5238237 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN4723 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 5237920..5238237 Pseudomonas putida GB-1 5872499 YP_001670911.1 CDS PputGB1_4689 NC_010322.1 5238227 5238940 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(5238227..5238940) Pseudomonas putida GB-1 5872500 YP_001670912.1 CDS PputGB1_4690 NC_010322.1 5238940 5240112 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN4725 aminotransferase, class I; hypothetical protein complement(5238940..5240112) Pseudomonas putida GB-1 5872501 YP_001670913.1 CDS PputGB1_4691 NC_010322.1 5240323 5240766 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN4726 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 5240323..5240766 Pseudomonas putida GB-1 5872502 YP_001670914.1 CDS PputGB1_4692 NC_010322.1 5240830 5241717 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 5240830..5241717 Pseudomonas putida GB-1 5872503 YP_001670915.1 CDS PputGB1_4693 NC_010322.1 5241881 5242057 D KEGG: pen:PSEEN4728 hypothetical protein; hypothetical protein 5241881..5242057 Pseudomonas putida GB-1 5872504 YP_001670916.1 CDS PputGB1_4694 NC_010322.1 5242041 5245016 D TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN4729 sensory box histidine kinase CrbA; multi-sensor signal transduction histidine kinase 5242041..5245016 Pseudomonas putida GB-1 5872505 YP_001670917.1 CDS PputGB1_4695 NC_010322.1 5245021 5246463 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4730 response regulator CbrB; Fis family two component sigma-54 specific transcriptional regulator 5245021..5246463 Pseudomonas putida GB-1 5872506 YP_001670918.1 CDS PputGB1_4696 NC_010322.1 5247261 5248649 D KEGG: pen:PSEEN4733 poly(A) polymerase I (PAP); TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 5247261..5248649 Pseudomonas putida GB-1 5872507 YP_001670919.1 CDS PputGB1_4697 NC_010322.1 5248646 5249125 D KEGG: pen:PSEEN4734 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5248646..5249125 Pseudomonas putida GB-1 5872508 YP_001670920.1 CDS panB NC_010322.1 5249388 5250188 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 5249388..5250188 Pseudomonas putida GB-1 5872509 YP_001670921.1 CDS panC NC_010322.1 5250185 5251048 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5250185..5251048 Pseudomonas putida GB-1 5872510 YP_001670922.1 CDS pgi NC_010322.1 5251226 5252890 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 5251226..5252890 Pseudomonas putida GB-1 5872511 YP_001670923.1 CDS PputGB1_4701 NC_010322.1 5253026 5254960 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 5253026..5254960 Pseudomonas putida GB-1 5872512 YP_001670924.1 CDS PputGB1_4702 NC_010322.1 5255003 5255872 D KEGG: pen:PSEEN4739 hypothetical protein; hypothetical protein 5255003..5255872 Pseudomonas putida GB-1 5872513 YP_001670925.1 CDS PputGB1_4703 NC_010322.1 5255951 5258887 D PFAM: protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein; hypothetical protein 5255951..5258887 Pseudomonas putida GB-1 5872514 YP_001670926.1 CDS PputGB1_4704 NC_010322.1 5258999 5259418 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN4741 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(5258999..5259418) Pseudomonas putida GB-1 5872515 YP_001670927.1 CDS PputGB1_4705 NC_010322.1 5259488 5259781 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4742 hypothetical protein; antibiotic biosynthesis monooxygenase 5259488..5259781 Pseudomonas putida GB-1 5872516 YP_001670928.1 CDS PputGB1_4706 NC_010322.1 5259859 5260209 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN0800 hypothetical protein; transport-associated complement(5259859..5260209) Pseudomonas putida GB-1 5872517 YP_001670929.1 CDS PputGB1_4707 NC_010322.1 5260474 5262579 R KEGG: pen:PSEEN0799 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(5260474..5262579) Pseudomonas putida GB-1 5872518 YP_001670930.1 CDS PputGB1_4708 NC_010322.1 5262595 5262750 R hypothetical protein complement(5262595..5262750) Pseudomonas putida GB-1 5872519 YP_001670931.1 CDS rpsO NC_010322.1 5262830 5263099 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(5262830..5263099) Pseudomonas putida GB-1 5872520 YP_001670932.1 CDS truB NC_010322.1 5263247 5264164 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(5263247..5264164) Pseudomonas putida GB-1 5872521 YP_001670933.1 CDS rbfA NC_010322.1 5264168 5264566 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(5264168..5264566) Pseudomonas putida GB-1 5872522 YP_001670934.1 CDS infB NC_010322.1 5264683 5267211 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(5264683..5267211) Pseudomonas putida GB-1 5872523 YP_001670935.1 CDS nusA NC_010322.1 5267239 5268720 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(5267239..5268720) Pseudomonas putida GB-1 5872524 YP_001670936.1 CDS PputGB1_4714 NC_010322.1 5268780 5269238 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(5268780..5269238) Pseudomonas putida GB-1 5872525 YP_001670937.1 CDS secG NC_010322.1 5269653 5270051 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pen:PSEEN0792 preprotein translocase SecG subunit; preprotein translocase subunit SecG complement(5269653..5270051) Pseudomonas putida GB-1 5872528 YP_001670938.1 CDS tpiA NC_010322.1 5270056 5270811 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(5270056..5270811) Pseudomonas putida GB-1 5872529 YP_001670939.1 CDS glmM NC_010322.1 5270877 5272217 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(5270877..5272217) Pseudomonas putida GB-1 5872530 YP_001670940.1 CDS PputGB1_4718 NC_010322.1 5272234 5273085 R KEGG: pen:PSEEN0788 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(5272234..5273085) Pseudomonas putida GB-1 5872531 YP_001670941.1 CDS PputGB1_4719 NC_010322.1 5273094 5274998 R KEGG: pen:PSEEN0787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(5273094..5274998) Pseudomonas putida GB-1 5872532 YP_001670942.1 CDS PputGB1_4720 NC_010322.1 5275202 5275828 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pen:PSEEN0786 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent; ribosomal RNA methyltransferase RrmJ/FtsJ complement(5275202..5275828) Pseudomonas putida GB-1 5872533 YP_001670943.1 CDS PputGB1_4721 NC_010322.1 5275931 5276239 D PFAM: protein of unknown function UPF0044; KEGG: pen:PSEEN0785 hypothetical protein; hypothetical protein 5275931..5276239 Pseudomonas putida GB-1 5872534 YP_001670944.1 CDS PputGB1_4722 NC_010322.1 5276252 5276701 R KEGG: pen:PSEEN0784 hypothetical protein; hypothetical protein complement(5276252..5276701) Pseudomonas putida GB-1 5872535 YP_001670945.1 CDS greA NC_010322.1 5276679 5277161 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(5276679..5277161) Pseudomonas putida GB-1 5872536 YP_001670946.1 CDS carB NC_010322.1 5277158 5280379 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(5277158..5280379) Pseudomonas putida GB-1 5872537 YP_001670947.1 CDS PputGB1_4725 NC_010322.1 5280485 5281621 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(5280485..5281621) Pseudomonas putida GB-1 5872538 YP_001670948.1 CDS PputGB1_4726 NC_010322.1 5281886 5282689 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(5281886..5282689) Pseudomonas putida GB-1 5872539 YP_001670949.1 CDS PputGB1_4727 NC_010322.1 5282703 5283827 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(5282703..5283827) Pseudomonas putida GB-1 5872540 YP_001670950.1 CDS dnaK NC_010322.1 5284021 5285946 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(5284021..5285946) Pseudomonas putida GB-1 5872541 YP_001670951.1 CDS PputGB1_4729 NC_010322.1 5286048 5286602 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(5286048..5286602) Pseudomonas putida GB-1 5872542 YP_001670952.1 CDS PputGB1_4730 NC_010322.1 5286793 5288466 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pen:PSEEN0776 DNA repair protein RecN; DNA repair protein RecN 5286793..5288466 Pseudomonas putida GB-1 5872543 YP_001670953.1 CDS PputGB1_4731 NC_010322.1 5288584 5288988 R PFAM: ferric-uptake regulator; KEGG: pen:PSEEN0775 transcriptional repressor for ferric uptake; ferric uptake regulator family protein complement(5288584..5288988) Pseudomonas putida GB-1 5872544 YP_001670954.1 CDS PputGB1_4732 NC_010322.1 5289086 5289622 D PFAM: SmpA/OmlA domain protein; KEGG: pen:PSEEN0773 outer membrane lipoprotein OmlA; SmpA/OmlA domain-containing protein 5289086..5289622 Pseudomonas putida GB-1 5872545 YP_001670955.1 CDS PputGB1_4733 NC_010322.1 5289683 5290117 R PFAM: cyclase/dehydrase; KEGG: pen:PSEEN0771 hypothetical protein; cyclase/dehydrase complement(5289683..5290117) Pseudomonas putida GB-1 5872546 YP_001670956.1 CDS smpB NC_010322.1 5290281 5290763 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 5290281..5290763 Pseudomonas putida GB-1 5872547 YP_001670957.1 CDS PputGB1_4735 NC_010322.1 5290896 5291663 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0769 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5290896..5291663) Pseudomonas putida GB-1 5872548 YP_001670958.1 CDS PputGB1_4736 NC_010322.1 5291918 5293588 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pen:PSEEN0768 L-lactate permease; L-lactate transport 5291918..5293588 Pseudomonas putida GB-1 5872549 YP_001670959.1 CDS lldD NC_010322.1 5293652 5294797 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 5293652..5294797 Pseudomonas putida GB-1 5872550 YP_001670960.1 CDS PputGB1_4738 NC_010322.1 5294873 5297683 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN0766 D-lactate deshydrogenase; D-lactate dehydrogenase 5294873..5297683 Pseudomonas putida GB-1 5872551 YP_001670961.1 CDS PputGB1_4739 NC_010322.1 5298003 5298293 D KEGG: pen:PSEEN0762 hypothetical protein; hypothetical protein 5298003..5298293 Pseudomonas putida GB-1 5872552 YP_001670962.1 CDS PputGB1_4740 NC_010322.1 5298977 5300233 D PFAM: integrase family protein; KEGG: pmy:Pmen_1188 phage integrase family protein; integrase family protein 5298977..5300233 Pseudomonas putida GB-1 5872554 YP_001670963.1 CDS PputGB1_4741 NC_010322.1 5300575 5300904 D KEGG: har:HEAR1848 conserved hypothetical protein in putative prophage region; hypothetical protein 5300575..5300904 Pseudomonas putida GB-1 5872555 YP_001670964.1 CDS PputGB1_4742 NC_010322.1 5300976 5301944 D KEGG: pmy:Pmen_1184 hypothetical protein; hypothetical protein 5300976..5301944 Pseudomonas putida GB-1 5872556 YP_001670965.1 CDS PputGB1_4743 NC_010322.1 5302021 5303025 D KEGG: pmy:Pmen_1183 phage-related protein predicted endonuclease-like protein; phage-like protein endonuclease-like protein 5302021..5303025 Pseudomonas putida GB-1 5872557 YP_001670966.1 CDS PputGB1_4744 NC_010322.1 5303103 5304017 D KEGG: pmy:Pmen_1182 hypothetical protein; hypothetical protein 5303103..5304017 Pseudomonas putida GB-1 5872558 YP_001670967.1 CDS PputGB1_4745 NC_010322.1 5304068 5304556 D PFAM: DNA repair protein RadC; KEGG: pmy:Pmen_1181 DNA repair protein RadC; DNA repair protein RadC 5304068..5304556 Pseudomonas putida GB-1 5872559 YP_001670968.1 CDS PputGB1_4746 NC_010322.1 5304732 5306126 R PFAM: Restriction endonuclease EcoRII; KEGG: bfr:BF3682 type II restriction endonuclease; restriction endonuclease EcoRII complement(5304732..5306126) Pseudomonas putida GB-1 5872560 YP_001670969.1 CDS PputGB1_4747 NC_010322.1 5306428 5306904 R TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: hha:Hhal_0413 DNA mismatch endonuclease vsr; DNA mismatch endonuclease Vsr complement(5306428..5306904) Pseudomonas putida GB-1 5872561 YP_001670970.1 CDS PputGB1_4748 NC_010322.1 5306912 5308255 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: plu:plu0338 DNA-cytosine methyltransferase; DNA cytosine methylase complement(5306912..5308255) Pseudomonas putida GB-1 5872562 YP_001670971.1 CDS PputGB1_4749 NC_010322.1 5308311 5308766 R KEGG: psa:PST_3400 transposase-like protein TnpA3; transposase-like protein TnpA3 complement(5308311..5308766) Pseudomonas putida GB-1 5872563 YP_001670972.1 CDS PputGB1_4750 NC_010322.1 5308900 5309745 R PFAM: HNH endonuclease; KEGG: kpn:KPN_04695 hypothetical protein; HNH endonuclease complement(5308900..5309745) Pseudomonas putida GB-1 5872564 YP_001670973.1 CDS PputGB1_4751 NC_010322.1 5309753 5311366 R KEGG: stp:Strop_0567 hypothetical protein; hypothetical protein complement(5309753..5311366) Pseudomonas putida GB-1 5872565 YP_001670974.1 CDS PputGB1_4752 NC_010322.1 5311381 5311794 R KEGG: bfr:BF3682 type II restriction endonuclease; hypothetical protein complement(5311381..5311794) Pseudomonas putida GB-1 5872566 YP_001670975.1 CDS PputGB1_4753 NC_010322.1 5311797 5313698 R KEGG: rci:LRC70 putative DNA/RNA helicase (SNF2 family); PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase complement(5311797..5313698) Pseudomonas putida GB-1 5872567 YP_001670976.1 CDS PputGB1_4754 NC_010322.1 5313959 5314558 R KEGG: slo:Shew_1252 transposase; transposase complement(5313959..5314558) Pseudomonas putida GB-1 5872568 YP_001670977.1 CDS PputGB1_4755 NC_010322.1 5315107 5315289 R PFAM: Prophage CP4-57 regulatory; KEGG: spc:Sputcn32_3522 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(5315107..5315289) Pseudomonas putida GB-1 5872569 YP_001670978.1 CDS PputGB1_4756 NC_010322.1 5315869 5316630 D KEGG: pmy:Pmen_1158 hypothetical protein; hypothetical protein 5315869..5316630 Pseudomonas putida GB-1 5872570 YP_001670979.1 CDS PputGB1_4757 NC_010322.1 5317896 5321141 D PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: hpy:HP0733 hypothetical protein; hypothetical protein 5317896..5321141 Pseudomonas putida GB-1 5872571 YP_001670980.1 CDS PputGB1_4758 NC_010322.1 5321141 5322844 D KEGG: hpa:HPAG1_0715 labile enterotoxin output A; labile enterotoxin output A 5321141..5322844 Pseudomonas putida GB-1 5872572 YP_001670981.1 CDS PputGB1_4759 NC_010322.1 5322904 5323161 R hypothetical protein complement(5322904..5323161) Pseudomonas putida GB-1 5872573 YP_001670982.1 CDS PputGB1_4760 NC_010322.1 5323281 5324156 D KEGG: psa:PST_0849 predicted transcriptional regulator; transcriptional regulator 5323281..5324156 Pseudomonas putida GB-1 5872574 YP_001670983.1 CDS PputGB1_4761 NC_010322.1 5324255 5326648 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mmw:Mmwyl1_3640 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(5324255..5326648) Pseudomonas putida GB-1 5872575 YP_001670984.1 CDS PputGB1_4762 NC_010322.1 5326768 5328312 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0751 transport protein, MFS superfamily; major facilitator superfamily transporter complement(5326768..5328312) Pseudomonas putida GB-1 5872576 YP_001670985.1 CDS PputGB1_4763 NC_010322.1 5328439 5329308 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0750 transcriptional regulator, LysR family; LysR family transcriptional regulator 5328439..5329308 Pseudomonas putida GB-1 5872577 YP_001670986.1 CDS PputGB1_4764 NC_010322.1 5329316 5329798 R PFAM: protein of unknown function DUF1016; KEGG: psb:Psyr_0608 protein of unknown function DUF1016; hypothetical protein complement(5329316..5329798) Pseudomonas putida GB-1 5872578 YP_001670987.1 CDS PputGB1_4765 NC_010322.1 5330038 5331429 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; amino acid permease-associated protein complement(5330038..5331429) Pseudomonas putida GB-1 5872579 YP_001670988.1 CDS PputGB1_4766 NC_010322.1 5331817 5333172 R KEGG: pen:PSEEN0731 D-glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase complement(5331817..5333172) Pseudomonas putida GB-1 5872580 YP_001670989.1 CDS PputGB1_4767 NC_010322.1 5333192 5334544 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0730 transport protein, MFS superfamily; major facilitator superfamily transporter complement(5333192..5334544) Pseudomonas putida GB-1 5872581 YP_001670990.1 CDS PputGB1_4768 NC_010322.1 5334805 5335506 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0729 transcriptional regulator, GntR family; GntR family transcriptional regulator 5334805..5335506 Pseudomonas putida GB-1 5872582 YP_001670991.1 CDS PputGB1_4769 NC_010322.1 5335673 5336434 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stt:t2116 ABC transporter ATP-binding protein; ABC transporter-like protein complement(5335673..5336434) Pseudomonas putida GB-1 5872583 YP_001670992.1 CDS PputGB1_4770 NC_010322.1 5336431 5337492 R PFAM: transport system permease protein; KEGG: pfl:PFL_3501 heme/hemin ABC transporter, permease protein; transport system permease complement(5336431..5337492) Pseudomonas putida GB-1 5872584 YP_001670993.1 CDS PputGB1_4771 NC_010322.1 5337489 5338601 R PFAM: periplasmic binding protein; KEGG: bur:Bcep18194_C7105 ABC Fe3+-hydroxamate transporter, periplasmic ligand binding protein; periplasmic binding protein complement(5337489..5338601) Pseudomonas putida GB-1 5872585 YP_001670994.1 CDS PputGB1_4772 NC_010322.1 5338732 5339742 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0727 oxidoreductase, zinc-binding alcohol dehydrogenase; alcohol dehydrogenase complement(5338732..5339742) Pseudomonas putida GB-1 5872586 YP_001670995.1 CDS PputGB1_4773 NC_010322.1 5339845 5340438 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(5339845..5340438) Pseudomonas putida GB-1 5872587 YP_001670996.1 CDS PputGB1_4774 NC_010322.1 5340435 5341304 R KEGG: pen:PSEEN0725 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(5340435..5341304) Pseudomonas putida GB-1 5872588 YP_001670997.1 CDS PputGB1_4775 NC_010322.1 5341452 5342021 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0723 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(5341452..5342021) Pseudomonas putida GB-1 5872589 YP_001670998.1 CDS PputGB1_4776 NC_010322.1 5342201 5342887 D PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN0722 hypothetical protein; putative phosphohistidine phosphatase, SixA 5342201..5342887 Pseudomonas putida GB-1 5872590 YP_001670999.1 CDS PputGB1_4777 NC_010322.1 5342926 5343840 D PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN0720 hydrolase; histone deacetylase family protein; histone deacetylase superfamily protein 5342926..5343840 Pseudomonas putida GB-1 5872591 YP_001671000.1 CDS PputGB1_4778 NC_010322.1 5343989 5345230 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: pen:PSEEN0719 hypothetical protein; hypothetical protein 5343989..5345230 Pseudomonas putida GB-1 5872592 YP_001671001.1 CDS PputGB1_4779 NC_010322.1 5345339 5346670 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN0718 ATP-dependent RNA helicase, DEAD box family (RhlE); DEAD/DEAH box helicase complement(5345339..5346670) Pseudomonas putida GB-1 5872593 YP_001671002.1 CDS PputGB1_4780 NC_010322.1 5346726 5347640 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4787 transporter; hypothetical protein complement(5346726..5347640) Pseudomonas putida GB-1 5872594 YP_001671003.1 CDS PputGB1_4781 NC_010322.1 5347774 5348379 R KEGG: pfo:Pfl_4924 exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(5347774..5348379) Pseudomonas putida GB-1 5872595 YP_001671004.1 CDS PputGB1_4782 NC_010322.1 5348388 5348867 R PFAM: protein of unknown function DUF88; KEGG: pen:PSEEN4789 hypothetical protein; hypothetical protein complement(5348388..5348867) Pseudomonas putida GB-1 5872596 YP_001671005.1 CDS PputGB1_4783 NC_010322.1 5349048 5349806 R KEGG: pen:PSEEN4790 hypothetical protein; putative periplasmic ligand-binding sensor protein complement(5349048..5349806) Pseudomonas putida GB-1 5872597 YP_001671006.1 CDS PputGB1_4784 NC_010322.1 5349973 5350629 D PFAM: protein of unknown function UPF0259; KEGG: pen:PSEEN4791 hypothetical protein; hypothetical protein 5349973..5350629 Pseudomonas putida GB-1 5872598 YP_001671007.1 CDS PputGB1_4785 NC_010322.1 5350717 5351208 D hypothetical protein 5350717..5351208 Pseudomonas putida GB-1 5872599 YP_001671008.1 CDS PputGB1_4786 NC_010322.1 5351227 5353320 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; KEGG: pen:PSEEN4792 helicase, ATP-dependent; ATP-dependent helicase HrpB complement(5351227..5353320) Pseudomonas putida GB-1 5872600 YP_001671009.1 CDS PputGB1_4787 NC_010322.1 5353455 5355815 D KEGG: mmw:Mmwyl1_4223 hypothetical protein; hypothetical protein 5353455..5355815 Pseudomonas putida GB-1 5872601 YP_001671010.1 CDS PputGB1_4788 NC_010322.1 5355799 5357901 D PFAM: integrase family protein; KEGG: pst:PSPTO_4746 site-specific recombinase, phage integrase family domain protein; integrase family protein 5355799..5357901 Pseudomonas putida GB-1 5872602 YP_001671011.1 CDS PputGB1_4789 NC_010322.1 5357898 5358524 D KEGG: pst:PSPTO_4747 hypothetical protein; hypothetical protein 5357898..5358524 Pseudomonas putida GB-1 5872603 YP_001671012.1 CDS PputGB1_4790 NC_010322.1 5358502 5359968 D PFAM: integrase family protein; KEGG: pst:PSPTO_4748 site-specific recombinase, phage integrase family; integrase family protein 5358502..5359968 Pseudomonas putida GB-1 5872604 YP_001671013.1 CDS PputGB1_4791 NC_010322.1 5360527 5360682 R KEGG: pst:PSPTO_5591 ISPsy5, transposase; ISPsy5, transposase complement(5360527..5360682) Pseudomonas putida GB-1 5872605 YP_001671014.1 CDS PputGB1_4792 NC_010322.1 5360715 5362235 R PFAM: transposase IS66; KEGG: pst:PSPTO_5591 ISPsy5, transposase; transposase IS66 complement(5360715..5362235) Pseudomonas putida GB-1 5872606 YP_001671015.1 CDS PputGB1_4793 NC_010322.1 5362263 5362622 R PFAM: IS66 Orf2 family protein; KEGG: pst:PSPTO_3221 ISPsy5, Orf1; IS66 Orf2 family protein complement(5362263..5362622) Pseudomonas putida GB-1 5872607 YP_001671016.1 CDS PputGB1_4794 NC_010322.1 5363121 5363489 R KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein complement(5363121..5363489) Pseudomonas putida GB-1 5872608 YP_001671017.1 CDS PputGB1_4795 NC_010322.1 5363618 5364736 R PFAM: RES domain protein; KEGG: neu:NE0745 hypothetical protein; RES domain-containing protein complement(5363618..5364736) Pseudomonas putida GB-1 5872609 YP_001671018.1 CDS PputGB1_4796 NC_010322.1 5364895 5365803 R hypothetical protein complement(5364895..5365803) Pseudomonas putida GB-1 5872610 YP_001671019.1 CDS PputGB1_4797 NC_010322.1 5365947 5366450 R KEGG: psp:PSPPH_0671 prophage PSPPH01, ImpB/MucB/SamB family protein; hypothetical protein complement(5365947..5366450) Pseudomonas putida GB-1 5872611 YP_001671020.1 CDS PputGB1_4798 NC_010322.1 5366496 5366714 R KEGG: xcb:XC_2789 hypothetical protein; hypothetical protein complement(5366496..5366714) Pseudomonas putida GB-1 5872612 YP_001671021.1 CDS PputGB1_4799 NC_010322.1 5366732 5368558 R PFAM: protein of unknown function DUF262; KEGG: sse:Ssed_2266 DUF262; hypothetical protein complement(5366732..5368558) Pseudomonas putida GB-1 5872613 YP_001671022.1 CDS PputGB1_4800 NC_010322.1 5369036 5369392 R KEGG: maq:Maqu_3373 hypothetical protein; hypothetical protein complement(5369036..5369392) Pseudomonas putida GB-1 5872614 YP_001671023.1 CDS PputGB1_4801 NC_010322.1 5369466 5370287 R PFAM: protein of unknown function UPF0174; KEGG: pau:PA14_03370 hypothetical protein; hypothetical protein complement(5369466..5370287) Pseudomonas putida GB-1 5872615 YP_001671024.1 CDS PputGB1_4802 NC_010322.1 5370284 5370901 R SMART: helix-turn-helix domain protein; XRE family transcriptional regulator complement(5370284..5370901) Pseudomonas putida GB-1 5872616 YP_001671025.1 CDS PputGB1_4803 NC_010322.1 5371945 5372334 D hypothetical protein 5371945..5372334 Pseudomonas putida GB-1 5872617 YP_001671026.1 CDS PputGB1_4804 NC_010322.1 5372372 5372731 R hypothetical protein complement(5372372..5372731) Pseudomonas putida GB-1 5872618 YP_001671027.1 CDS PputGB1_4805 NC_010322.1 5372789 5373517 R PFAM: metallophosphoesterase; KEGG: pst:PSPTO_0031 Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(5372789..5373517) Pseudomonas putida GB-1 5872619 YP_001671028.1 CDS PputGB1_4806 NC_010322.1 5373597 5374160 R hypothetical protein complement(5373597..5374160) Pseudomonas putida GB-1 5872620 YP_001671029.1 CDS PputGB1_4807 NC_010322.1 5374940 5375404 D PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_4760 DNA-binding protein; Fis family transcriptional regulator 5374940..5375404 Pseudomonas putida GB-1 5872621 YP_001671030.1 CDS PputGB1_4808 NC_010322.1 5375561 5378095 R KEGG: psa:PST_0583 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB complement(5375561..5378095) Pseudomonas putida GB-1 5872622 YP_001671031.1 CDS PputGB1_4809 NC_010322.1 5378194 5378616 R hypothetical protein complement(5378194..5378616) Pseudomonas putida GB-1 5872623 YP_001671032.1 CDS PputGB1_4810 NC_010322.1 5378668 5378934 R hypothetical protein complement(5378668..5378934) Pseudomonas putida GB-1 5872624 YP_001671033.1 CDS PputGB1_4811 NC_010322.1 5379057 5379263 R KEGG: hne:HNE_0069 hypothetical protein; hypothetical protein complement(5379057..5379263) Pseudomonas putida GB-1 5872625 YP_001671034.1 CDS PputGB1_4812 NC_010322.1 5379266 5379520 R KEGG: psp:PSPPH_0607 hypothetical protein; hypothetical protein complement(5379266..5379520) Pseudomonas putida GB-1 5872626 YP_001671035.1 CDS PputGB1_4813 NC_010322.1 5380099 5381367 R KEGG: xcb:XC_2441 hypothetical protein; hypothetical protein complement(5380099..5381367) Pseudomonas putida GB-1 5872627 YP_001671036.1 CDS PputGB1_4814 NC_010322.1 5381364 5382308 R KEGG: xcb:XC_2442 hypothetical protein; hypothetical protein complement(5381364..5382308) Pseudomonas putida GB-1 5872628 YP_001671037.1 CDS PputGB1_4815 NC_010322.1 5382289 5384160 R PFAM: KAP P-loop domain protein; KEGG: xcb:XC_2443 hypothetical protein; KAP P-loop domain-containing protein complement(5382289..5384160) Pseudomonas putida GB-1 5872629 YP_001671038.1 CDS PputGB1_4816 NC_010322.1 5384330 5385697 R hypothetical protein complement(5384330..5385697) Pseudomonas putida GB-1 5872630 YP_001671039.1 CDS PputGB1_4817 NC_010322.1 5386033 5386470 R PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein complement(5386033..5386470) Pseudomonas putida GB-1 5872631 YP_001671040.1 CDS PputGB1_4818 NC_010322.1 5386518 5386886 R KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA complement(5386518..5386886) Pseudomonas putida GB-1 5872632 YP_001671041.1 CDS PputGB1_4819 NC_010322.1 5386967 5387236 R hypothetical protein complement(5386967..5387236) Pseudomonas putida GB-1 5872633 YP_001671042.1 CDS PputGB1_4820 NC_010322.1 5387471 5389177 R KEGG: pen:PSEEN1852 sensory box-containing diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5387471..5389177) Pseudomonas putida GB-1 5872634 YP_001671043.1 CDS PputGB1_4823 NC_010322.1 5390944 5391924 R PFAM: transposase IS4 family protein; KEGG: psp:PSPPH_3329 ISPsy2, transposase; transposase IS4 family protein complement(5390944..5391924) Pseudomonas putida GB-1 5872636 YP_001671044.1 CDS PputGB1_4824 NC_010322.1 5392187 5392555 D KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA 5392187..5392555 Pseudomonas putida GB-1 5872637 YP_001671045.1 CDS PputGB1_4825 NC_010322.1 5392603 5393040 D PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein 5392603..5393040 Pseudomonas putida GB-1 5872638 YP_001671046.1 CDS PputGB1_4826 NC_010322.1 5393037 5393699 R SMART: DEAD-like helicase; KEGG: pst:PSPTO_4773 ATP-dependent helicase, N-terminal domain protein; DEAD/DEAH box helicase complement(5393037..5393699) Pseudomonas putida GB-1 5872639 YP_001671047.1 CDS PputGB1_4827 NC_010322.1 5393816 5394235 D KEGG: pen:PSEEN4793 hypothetical protein; hypothetical protein 5393816..5394235 Pseudomonas putida GB-1 5872640 YP_001671048.1 CDS PputGB1_4828 NC_010322.1 5394258 5395130 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pen:PSEEN4794 cation efflux protein; cation diffusion facilitator family transporter 5394258..5395130 Pseudomonas putida GB-1 5872641 YP_001671049.1 CDS PputGB1_4829 NC_010322.1 5395165 5396001 R KEGG: pen:PSEEN4795 hypothetical protein; hypothetical protein complement(5395165..5396001) Pseudomonas putida GB-1 5872642 YP_001671050.1 CDS PputGB1_4830 NC_010322.1 5396393 5396869 D PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: pen:PSEEN4796 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5396393..5396869 Pseudomonas putida GB-1 5872643 YP_001671051.1 CDS PputGB1_4831 NC_010322.1 5396924 5397127 D KEGG: pen:PSEEN4797 hypothetical protein; hypothetical protein 5396924..5397127 Pseudomonas putida GB-1 5872644 YP_001671052.1 CDS PputGB1_4832 NC_010322.1 5397163 5397801 R PFAM: pseudouridine synthase; KEGG: pen:PSEEN4798 pseudouridylate synthase; pseudouridine synthase complement(5397163..5397801) Pseudomonas putida GB-1 5872645 YP_001671053.1 CDS PputGB1_4833 NC_010322.1 5397808 5399271 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(5397808..5399271) Pseudomonas putida GB-1 5872646 YP_001671054.1 CDS PputGB1_4834 NC_010322.1 5399377 5401029 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN4800 acyl-CoA dehydrogenase (AidB); acyl-CoA dehydrogenase domain-containing protein complement(5399377..5401029) Pseudomonas putida GB-1 5872647 YP_001671055.1 CDS PputGB1_4835 NC_010322.1 5401156 5403144 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4801 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(5401156..5403144) Pseudomonas putida GB-1 5872648 YP_001671056.1 CDS PputGB1_4836 NC_010322.1 5403410 5404207 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 5403410..5404207 Pseudomonas putida GB-1 5872649 YP_001671057.1 CDS thiE NC_010322.1 5404221 5404844 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 5404221..5404844 Pseudomonas putida GB-1 5872650 YP_001671058.1 CDS PputGB1_4838 NC_010322.1 5404861 5406144 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 5404861..5406144 Pseudomonas putida GB-1 5872651 YP_001671059.1 CDS PputGB1_4839 NC_010322.1 5406432 5406977 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4805 hypothetical protein; Sel1 domain-containing protein 5406432..5406977 Pseudomonas putida GB-1 5872652 YP_001671060.1 CDS PputGB1_4840 NC_010322.1 5406981 5407349 R PFAM: Domain of unknown function DUF1820; KEGG: pmy:Pmen_3777 hypothetical protein; hypothetical protein complement(5406981..5407349) Pseudomonas putida GB-1 5872653 YP_001671061.1 CDS PputGB1_4841 NC_010322.1 5407496 5408494 D PFAM: PhoH family protein; KEGG: pen:PSEEN4807 phosphate starvation-inducible protein (PhoH-like); PhoH family protein 5407496..5408494 Pseudomonas putida GB-1 5872654 YP_001671062.1 CDS PputGB1_4842 NC_010322.1 5408487 5408960 D PFAM: protein of unknown function UPF0054; KEGG: pen:PSEEN4808 hypothetical protein; putative metalloprotease 5408487..5408960 Pseudomonas putida GB-1 5872655 YP_001671063.1 CDS PputGB1_4843 NC_010322.1 5408986 5409825 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: pen:PSEEN4809 magnesium and cobalt efflux protein CorC; hypothetical protein 5408986..5409825 Pseudomonas putida GB-1 5872656 YP_001671064.1 CDS lnt NC_010322.1 5409834 5411351 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 5409834..5411351 Pseudomonas putida GB-1 5872657 YP_001671065.1 CDS PputGB1_4845 NC_010322.1 5411478 5412239 R PFAM: protein of unknown function DUF218; KEGG: pen:PSEEN4811 hypothetical protein; hypothetical protein complement(5411478..5412239) Pseudomonas putida GB-1 5872658 YP_001671066.1 CDS PputGB1_4846 NC_010322.1 5412373 5412687 R KEGG: pen:PSEEN4812 hypothetical protein; hypothetical protein complement(5412373..5412687) Pseudomonas putida GB-1 5872659 YP_001671067.1 CDS leuS NC_010322.1 5412916 5415522 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 5412916..5415522 Pseudomonas putida GB-1 5872660 YP_001671068.1 CDS PputGB1_4848 NC_010322.1 5415584 5416189 D PFAM: Rare lipoprotein B; KEGG: pen:PSEEN4814 lipoprotein, rare lipoprotein B family; rare lipoprotein B 5415584..5416189 Pseudomonas putida GB-1 5872661 YP_001671069.1 CDS holA NC_010322.1 5416211 5417266 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 5416211..5417266 Pseudomonas putida GB-1 5872662 YP_001671070.1 CDS PputGB1_4850 NC_010322.1 5417375 5417539 D PFAM: protein of unknown function DUF331; KEGG: pen:PSEEN4816 hypothetical protein; hypothetical protein 5417375..5417539 Pseudomonas putida GB-1 5872663 YP_001671071.1 CDS PputGB1_4851 NC_010322.1 5417600 5418916 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pen:PSEEN4817 membrane-bound lytic murein transglycosylase; lytic murein transglycosylase 5417600..5418916 Pseudomonas putida GB-1 5872664 YP_001671072.1 CDS PputGB1_4852 NC_010322.1 5419007 5419945 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pen:PSEEN4818 muramoyltetrapeptide carboxypeptidase; peptidase U61 LD-carboxypeptidase A complement(5419007..5419945) Pseudomonas putida GB-1 5872665 YP_001671073.1 CDS PputGB1_4853 NC_010322.1 5420033 5421049 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(5420033..5421049) Pseudomonas putida GB-1 5872666 YP_001671074.1 CDS lipB NC_010322.1 5421052 5421699 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(5421052..5421699) Pseudomonas putida GB-1 5872667 YP_001671075.1 CDS PputGB1_4855 NC_010322.1 5421699 5421974 R PFAM: protein of unknown function DUF493; KEGG: pen:PSEEN4821 hypothetical protein; hypothetical protein complement(5421699..5421974) Pseudomonas putida GB-1 5872668 YP_001671076.1 CDS PputGB1_4856 NC_010322.1 5422048 5423208 R PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pen:PSEEN4822 D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor); serine-type D-Ala-D-Ala carboxypeptidase complement(5422048..5423208) Pseudomonas putida GB-1 5872669 YP_001671077.1 CDS PputGB1_4857 NC_010322.1 5423431 5424432 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pen:PSEEN4823 lipoprotein, rare lipoprotein A family; rare lipoprotein A complement(5423431..5424432) Pseudomonas putida GB-1 5872670 YP_001671078.1 CDS PputGB1_4858 NC_010322.1 5424432 5425442 R TIGRFAM: lytic murein transglycosylase B; KEGG: pen:PSEEN4824 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B complement(5424432..5425442) Pseudomonas putida GB-1 5872671 YP_001671079.1 CDS PputGB1_4859 NC_010322.1 5425460 5426602 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pen:PSEEN4825 rod shape-determining protein; rod shape-determining protein RodA complement(5425460..5426602) Pseudomonas putida GB-1 5872672 YP_001671080.1 CDS PputGB1_4860 NC_010322.1 5426602 5428491 R KEGG: pen:PSEEN4826 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(5426602..5428491) Pseudomonas putida GB-1 5872673 YP_001671081.1 CDS PputGB1_4861 NC_010322.1 5428508 5428975 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(5428508..5428975) Pseudomonas putida GB-1 5872674 YP_001671082.1 CDS PputGB1_4862 NC_010322.1 5428986 5429405 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pen:PSEEN4828 hypothetical protein; iojap family protein complement(5428986..5429405) Pseudomonas putida GB-1 5872675 YP_001671083.1 CDS nadD NC_010322.1 5429449 5430108 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(5429449..5430108) Pseudomonas putida GB-1 5872676 YP_001671084.1 CDS proA NC_010322.1 5430110 5431381 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(5430110..5431381) Pseudomonas putida GB-1 5872677 YP_001671085.1 CDS PputGB1_4865 NC_010322.1 5431676 5432344 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 5431676..5432344 Pseudomonas putida GB-1 5872678 YP_001671086.1 CDS PputGB1_4866 NC_010322.1 5432347 5433663 D PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: pen:PSEEN4833 phosphatase, PAP2 family; phosphoesterase PA-phosphatase-like protein 5432347..5433663 Pseudomonas putida GB-1 5872679 YP_001671087.1 CDS PputGB1_4867 NC_010322.1 5433729 5434319 R PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN4834 ATP-dependent protease La domain protein; peptidase S16 lon domain-containing protein complement(5433729..5434319) Pseudomonas putida GB-1 5872680 YP_001671088.1 CDS PputGB1_4868 NC_010322.1 5434329 5435045 R PFAM: LrgB family protein; KEGG: pen:PSEEN4835 hypothetical protein; LrgB family protein complement(5434329..5435045) Pseudomonas putida GB-1 5872681 YP_001671089.1 CDS PputGB1_4869 NC_010322.1 5435042 5435404 R PFAM: LrgA family protein; KEGG: pen:PSEEN4836 hypothetical protein; LrgA family protein complement(5435042..5435404) Pseudomonas putida GB-1 5872682 YP_001671090.1 CDS PputGB1_4870 NC_010322.1 5435548 5436003 D PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN4838 MaoC-like dehydratase; dehydratase 5435548..5436003 Pseudomonas putida GB-1 5872683 YP_001671091.1 CDS prmA NC_010322.1 5436205 5437083 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5436205..5437083 Pseudomonas putida GB-1 5872684 YP_001671092.1 CDS PputGB1_4872 NC_010322.1 5437126 5438493 D TIGRFAM: MJ0042 family finger-like protein; KEGG: pen:PSEEN4860 hypothetical protein; Zinc finger-domain-containing protein 5437126..5438493 Pseudomonas putida GB-1 5872685 YP_001671093.1 CDS PputGB1_4873 NC_010322.1 5438669 5439682 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN4861 dihydrouridine synthase TIM-barrel protein nifR3; NifR3 family TIM-barrel protein 5438669..5439682 Pseudomonas putida GB-1 5872686 YP_001671094.1 CDS fis NC_010322.1 5439679 5439999 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5439679..5439999 Pseudomonas putida GB-1 5872687 YP_001671095.1 CDS purH NC_010322.1 5440081 5441688 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5440081..5441688 Pseudomonas putida GB-1 5872688 YP_001671096.1 CDS PputGB1_4876 NC_010322.1 5441858 5443153 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5441858..5443153 Pseudomonas putida GB-1 5872689 YP_001671097.1 CDS PputGB1_4877 NC_010322.1 5443289 5446060 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4865 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 5443289..5446060 Pseudomonas putida GB-1 5872690 YP_001671098.1 CDS PputGB1_4878 NC_010322.1 5446150 5446746 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pen:PSEEN4866 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein 5446150..5446746 Pseudomonas putida GB-1 5872691 YP_001671099.1 CDS PputGB1_4879 NC_010322.1 5446743 5447366 R hypothetical protein complement(5446743..5447366) Pseudomonas putida GB-1 5872692 YP_001671100.1 CDS PputGB1_4880 NC_010322.1 5447359 5448051 R hypothetical protein complement(5447359..5448051) Pseudomonas putida GB-1 5872693 YP_001671101.1 CDS PputGB1_4881 NC_010322.1 5448111 5448791 R KEGG: pen:PSEEN4867 hypothetical protein; hypothetical protein complement(5448111..5448791) Pseudomonas putida GB-1 5872694 YP_001671102.1 CDS PputGB1_4882 NC_010322.1 5448885 5450567 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pen:PSEEN4868 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(5448885..5450567) Pseudomonas putida GB-1 5872695 YP_001671103.1 CDS PputGB1_4883 NC_010322.1 5450570 5451301 R catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase complement(5450570..5451301) Pseudomonas putida GB-1 5872696 YP_001671104.1 CDS cobH NC_010322.1 5451301 5451927 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(5451301..5451927) Pseudomonas putida GB-1 5872697 YP_001671105.1 CDS PputGB1_4885 NC_010322.1 5451920 5453251 R TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN4871 precorrin-3B synthase; precorrin-3B synthase complement(5451920..5453251) Pseudomonas putida GB-1 5872698 YP_001671106.1 CDS PputGB1_4886 NC_010322.1 5453397 5454608 D KEGG: pen:PSEEN4872 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5453397..5454608 Pseudomonas putida GB-1 5872699 YP_001671107.1 CDS cbiD NC_010322.1 5454601 5455695 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5454601..5455695 Pseudomonas putida GB-1 5872700 YP_001671108.1 CDS PputGB1_4888 NC_010322.1 5455692 5456411 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5455692..5456411 Pseudomonas putida GB-1 5872701 YP_001671109.1 CDS PputGB1_4889 NC_010322.1 5456535 5456972 D PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN4877 hypothetical protein; hypothetical protein 5456535..5456972 Pseudomonas putida GB-1 5872702 YP_001671110.1 CDS PputGB1_4890 NC_010322.1 5457000 5457854 D PFAM: band 7 protein; KEGG: pen:PSEEN4878 hypothetical protein; hypothetical protein 5457000..5457854 Pseudomonas putida GB-1 5872703 YP_001671111.1 CDS PputGB1_4891 NC_010322.1 5458072 5458461 D KEGG: pen:PSEEN4879 hypothetical protein; hypothetical protein 5458072..5458461 Pseudomonas putida GB-1 5872704 YP_001671112.1 CDS PputGB1_4892 NC_010322.1 5458509 5458994 D PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN4881 hypothetical protein; hypothetical protein 5458509..5458994 Pseudomonas putida GB-1 5872705 YP_001671113.1 CDS PputGB1_4893 NC_010322.1 5459017 5459448 D KEGG: pen:PSEEN4882 hypothetical protein; hypothetical protein 5459017..5459448 Pseudomonas putida GB-1 5872706 YP_001671114.1 CDS PputGB1_4894 NC_010322.1 5459515 5461581 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN4883 outer membrane copper receptor OprC; TonB-dependent copper receptor 5459515..5461581 Pseudomonas putida GB-1 5872707 YP_001671115.1 CDS PputGB1_4895 NC_010322.1 5461640 5463007 D PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4884 hypothetical protein; peptidase 5461640..5463007 Pseudomonas putida GB-1 5872708 YP_001671116.1 CDS PputGB1_4896 NC_010322.1 5463230 5464651 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5463230..5464651 Pseudomonas putida GB-1 5872709 YP_001671117.1 CDS PputGB1_4897 NC_010322.1 5464699 5466042 R KEGG: pap:PSPA7_4058 probable carbohydrate binding domain; hypothetical protein complement(5464699..5466042) Pseudomonas putida GB-1 5872710 YP_001671118.1 CDS PputGB1_4898 NC_010322.1 5466447 5467712 D TIGRFAM: urea ABC transporter, urea binding protein; KEGG: pen:PSEEN4888 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea binding protein 5466447..5467712 Pseudomonas putida GB-1 5872711 YP_001671119.1 CDS PputGB1_4899 NC_010322.1 5467832 5469319 D TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4889 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtB 5467832..5469319 Pseudomonas putida GB-1 5872712 YP_001671120.1 CDS PputGB1_4900 NC_010322.1 5469319 5470398 D TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4890 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtC 5469319..5470398 Pseudomonas putida GB-1 5872713 YP_001671121.1 CDS PputGB1_4901 NC_010322.1 5470395 5471252 D TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pen:PSEEN4891 branched-chain amino acid transport ABC transporter, ATP-binding component; urea ABC transporter ATP-binding protein UrtD 5470395..5471252 Pseudomonas putida GB-1 5872714 YP_001671122.1 CDS PputGB1_4902 NC_010322.1 5471270 5471968 D KEGG: pen:PSEEN4892 branched-chain amino acid ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 5471270..5471968 Pseudomonas putida GB-1 5872715 YP_001671123.1 CDS PputGB1_4903 NC_010322.1 5472000 5472515 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4893 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5472000..5472515 Pseudomonas putida GB-1 5872716 YP_001671124.1 CDS PputGB1_4904 NC_010322.1 5472584 5472889 R KEGG: pen:PSEEN4895 hypothetical protein; hypothetical protein complement(5472584..5472889) Pseudomonas putida GB-1 5872717 YP_001671125.1 CDS PputGB1_4905 NC_010322.1 5472892 5473848 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein; chaperone DnaJ domain-containing protein complement(5472892..5473848) Pseudomonas putida GB-1 5872718 YP_001671126.1 CDS PputGB1_4906 NC_010322.1 5474013 5475284 D KEGG: pen:PSEEN4897 heat-shock protein, HSP70 family; HSP70 family protein 5474013..5475284 Pseudomonas putida GB-1 5872719 YP_001671127.1 CDS PputGB1_4907 NC_010322.1 5475321 5476328 R KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein complement(5475321..5476328) Pseudomonas putida GB-1 5872720 YP_001671128.1 CDS PputGB1_4908 NC_010322.1 5476399 5476686 R PFAM: PsiF repeat protein; KEGG: pen:PSEEN4899 protein induced by phosphate starvation; PsiF repeat-containing protein complement(5476399..5476686) Pseudomonas putida GB-1 5872721 YP_001671129.1 CDS PputGB1_4909 NC_010322.1 5476750 5477538 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN4900 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5476750..5477538) Pseudomonas putida GB-1 5872722 YP_001671130.1 CDS PputGB1_4910 NC_010322.1 5477701 5478573 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein; hypothetical protein 5477701..5478573 Pseudomonas putida GB-1 5872723 YP_001671131.1 CDS PputGB1_4911 NC_010322.1 5478570 5479460 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4903 triacylglycerol lipase; alpha/beta hydrolase fold family protein complement(5478570..5479460) Pseudomonas putida GB-1 5872724 YP_001671132.1 CDS PputGB1_4912 NC_010322.1 5479583 5479924 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5479583..5479924 Pseudomonas putida GB-1 5872725 YP_001671133.1 CDS PputGB1_4913 NC_010322.1 5479961 5480491 D PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: pen:PSEEN4905 bacterioferritin; ferritin Dps family protein 5479961..5480491 Pseudomonas putida GB-1 5872726 YP_001671134.1 CDS PputGB1_4914 NC_010322.1 5480603 5482669 R PFAM: AsmA family protein; KEGG: pen:PSEEN4906 hypothetical protein; AsmA family protein complement(5480603..5482669) Pseudomonas putida GB-1 5872727 YP_001671135.1 CDS PputGB1_4915 NC_010322.1 5483011 5483508 D KEGG: pen:PSEEN4907 hypothetical protein; hypothetical protein 5483011..5483508 Pseudomonas putida GB-1 5872728 YP_001671136.1 CDS PputGB1_4916 NC_010322.1 5483631 5484266 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN4908 transcriptional regulator, TetR family; TetR family transcriptional regulator 5483631..5484266 Pseudomonas putida GB-1 5872729 YP_001671137.1 CDS PputGB1_4917 NC_010322.1 5484277 5485407 D PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4909 mannose-6-phosphate isomerase; N-acylglucosamine 2-epimerase 5484277..5485407 Pseudomonas putida GB-1 5872730 YP_001671138.1 CDS PputGB1_4918 NC_010322.1 5485535 5486302 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(5485535..5486302) Pseudomonas putida GB-1 5872731 YP_001671139.1 CDS PputGB1_4919 NC_010322.1 5486897 5487613 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4913 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5486897..5487613) Pseudomonas putida GB-1 5872732 YP_001671140.1 CDS PputGB1_4920 NC_010322.1 5487610 5488485 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4914 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5487610..5488485) Pseudomonas putida GB-1 5872733 YP_001671141.1 CDS PputGB1_4921 NC_010322.1 5488482 5489783 R PFAM: inner-membrane translocator; KEGG: pen:PSEEN4915 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(5488482..5489783) Pseudomonas putida GB-1 5872734 YP_001671142.1 CDS PputGB1_4922 NC_010322.1 5489789 5490703 R PFAM: inner-membrane translocator; KEGG: pfo:Pfl_0553 inner-membrane translocator; inner-membrane translocator complement(5489789..5490703) Pseudomonas putida GB-1 5872735 YP_001671143.1 CDS PputGB1_4923 NC_010322.1 5490858 5491994 R PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN4917 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor complement(5490858..5491994) Pseudomonas putida GB-1 5872736 YP_001671144.1 CDS PputGB1_4924 NC_010322.1 5492443 5493648 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5492443..5493648 Pseudomonas putida GB-1 5872737 YP_001671145.1 CDS nadE NC_010322.1 5493652 5494479 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5493652..5494479 Pseudomonas putida GB-1 5872738 YP_001671146.1 CDS PputGB1_4926 NC_010322.1 5494594 5495046 R TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN4921 azurin; azurin complement(5494594..5495046) Pseudomonas putida GB-1 5872739 YP_001671147.1 CDS PputGB1_4927 NC_010322.1 5495393 5495980 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4924 hypothetical protein; hypothetical protein 5495393..5495980 Pseudomonas putida GB-1 5872740 YP_001671148.1 CDS PputGB1_4928 NC_010322.1 5496024 5498234 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN4925 Fe-S oxidase, SAM-binding; hypothetical protein complement(5496024..5498234) Pseudomonas putida GB-1 5872741 YP_001671149.1 CDS PputGB1_4929 NC_010322.1 5498801 5499739 D KEGG: psp:PSPPH_0325 hypothetical protein; hypothetical protein 5498801..5499739 Pseudomonas putida GB-1 5872742 YP_001671150.1 CDS PputGB1_4930 NC_010322.1 5499782 5501179 R unwinds double stranded DNA; replicative DNA helicase complement(5499782..5501179) Pseudomonas putida GB-1 5872743 YP_001671151.1 CDS rplI NC_010322.1 5501293 5501739 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(5501293..5501739) Pseudomonas putida GB-1 5872744 YP_001671152.1 CDS PputGB1_4932 NC_010322.1 5501760 5502623 R KEGG: pen:PSEEN4928 hypothetical protein; hypothetical protein complement(5501760..5502623) Pseudomonas putida GB-1 5872745 YP_001671153.1 CDS rpsR NC_010322.1 5502657 5502887 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(5502657..5502887) Pseudomonas putida GB-1 5872746 YP_001671154.1 CDS rpsF NC_010322.1 5502916 5503341 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(5502916..5503341) Pseudomonas putida GB-1 5872747 YP_001671155.1 CDS PputGB1_4935 NC_010322.1 5503627 5504373 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pen:PSEEN4932 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase complement(5503627..5504373) Pseudomonas putida GB-1 5872748 YP_001671156.1 CDS PputGB1_4936 NC_010322.1 5504370 5506943 R KEGG: pen:PSEEN4933 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(5504370..5506943) Pseudomonas putida GB-1 5872749 YP_001671157.1 CDS PputGB1_4937 NC_010322.1 5507677 5508690 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4935 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5507677..5508690 Pseudomonas putida GB-1 5872752 YP_001671158.1 CDS PputGB1_4938 NC_010322.1 5508690 5510255 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4936 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5508690..5510255 Pseudomonas putida GB-1 5872753 YP_001671159.1 CDS PputGB1_4939 NC_010322.1 5510306 5510776 R KEGG: kla:KLLA0F24948g unnamed protein product; hypothetical protein complement(5510306..5510776) Pseudomonas putida GB-1 5872754 YP_001671160.1 CDS PputGB1_4940 NC_010322.1 5510866 5512800 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4937 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(5510866..5512800) Pseudomonas putida GB-1 5872755 YP_001671161.1 CDS PputGB1_4941 NC_010322.1 5512987 5514279 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5512987..5514279) Pseudomonas putida GB-1 5872756 YP_001671162.1 CDS hisZ NC_010322.1 5514336 5515523 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(5514336..5515523) Pseudomonas putida GB-1 5872757 YP_001671163.1 CDS PputGB1_4943 NC_010322.1 5515825 5516694 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pen:PSEEN4940 HflC protein; HflC protein complement(5515825..5516694) Pseudomonas putida GB-1 5872758 YP_001671164.1 CDS PputGB1_4944 NC_010322.1 5516694 5517875 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pen:PSEEN4941 HflK protein; HflK protein complement(5516694..5517875) Pseudomonas putida GB-1 5872759 YP_001671165.1 CDS PputGB1_4945 NC_010322.1 5517972 5519273 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN4942 hypothetical protein; GTP-binding proten HflX complement(5517972..5519273) Pseudomonas putida GB-1 5872760 YP_001671166.1 CDS hfq NC_010322.1 5519286 5519546 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(5519286..5519546) Pseudomonas putida GB-1 5872761 YP_001671167.1 CDS miaA NC_010322.1 5519641 5520612 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(5519641..5520612) Pseudomonas putida GB-1 5872762 YP_001671168.1 CDS mutL NC_010322.1 5520614 5522512 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(5520614..5522512) Pseudomonas putida GB-1 5872763 YP_001671169.1 CDS PputGB1_4949 NC_010322.1 5522512 5523942 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: pen:PSEEN4946 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(5522512..5523942) Pseudomonas putida GB-1 5872764 YP_001671170.1 CDS PputGB1_4950 NC_010322.1 5523954 5524427 R PFAM: protein of unknown function UPF0079; KEGG: pen:PSEEN4947 hypothetical protein; hypothetical protein complement(5523954..5524427) Pseudomonas putida GB-1 5872765 YP_001671171.1 CDS PputGB1_4951 NC_010322.1 5524415 5525338 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: pen:PSEEN4948 hypothetical protein; carbohydrate kinase complement(5524415..5525338) Pseudomonas putida GB-1 5872766 YP_001671172.1 CDS PputGB1_4952 NC_010322.1 5525341 5526405 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pen:PSEEN4949 iron-sulfur cluster-binding protein; iron-sulfur cluster binding protein 5525341..5526405 Pseudomonas putida GB-1 5872767 YP_001671173.1 CDS PputGB1_4953 NC_010322.1 5526431 5527042 R PFAM: protein of unknown function UPF0126; KEGG: pen:PSEEN4953 hypothetical protein; hypothetical protein complement(5526431..5527042) Pseudomonas putida GB-1 5872768 YP_001671174.1 CDS PputGB1_4954 NC_010322.1 5527134 5527676 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(5527134..5527676) Pseudomonas putida GB-1 5872769 YP_001671175.1 CDS PputGB1_4955 NC_010322.1 5527829 5528860 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5527829..5528860 Pseudomonas putida GB-1 5872770 YP_001671176.1 CDS PputGB1_4956 NC_010322.1 5528995 5529474 D KEGG: pen:PSEEN4956 hypothetical protein; hypothetical protein 5528995..5529474 Pseudomonas putida GB-1 5872771 YP_001671177.1 CDS motB NC_010322.1 5529564 5530616 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(5529564..5530616) Pseudomonas putida GB-1 5872772 YP_001671178.1 CDS PputGB1_4958 NC_010322.1 5530620 5531471 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(5530620..5531471) Pseudomonas putida GB-1 5872773 YP_001671179.1 CDS PputGB1_4959 NC_010322.1 5531602 5533137 D PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4959 hypothetical protein; metal-dependent hydrolase HDOD 5531602..5533137 Pseudomonas putida GB-1 5872774 YP_001671180.1 CDS PputGB1_4960 NC_010322.1 5533182 5533991 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN4960 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 5533182..5533991 Pseudomonas putida GB-1 5872775 YP_001671181.1 CDS psd NC_010322.1 5534001 5534864 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5534001..5534864 Pseudomonas putida GB-1 5872776 YP_001671182.1 CDS PputGB1_4962 NC_010322.1 5534973 5536187 R KEGG: pen:PSEEN4962 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(5534973..5536187) Pseudomonas putida GB-1 5872777 YP_001671183.1 CDS PputGB1_4963 NC_010322.1 5536364 5537782 D KEGG: pen:PSEEN4963 hypothetical protein; hypothetical protein 5536364..5537782 Pseudomonas putida GB-1 5872778 YP_001671184.1 CDS PputGB1_4964 NC_010322.1 5537861 5538505 R PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN4964 hypothetical protein; hypothetical protein complement(5537861..5538505) Pseudomonas putida GB-1 5872779 YP_001671185.1 CDS PputGB1_4965 NC_010322.1 5538744 5541002 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(5538744..5541002) Pseudomonas putida GB-1 5872780 YP_001671186.1 CDS PputGB1_4966 NC_010322.1 5541013 5541531 R KEGG: pen:PSEEN4967 hypothetical protein; hypothetical protein complement(5541013..5541531) Pseudomonas putida GB-1 5872781 YP_001671187.1 CDS PputGB1_4967 NC_010322.1 5541528 5542514 R KEGG: pen:PSEEN4968 hypothetical protein; hypothetical protein complement(5541528..5542514) Pseudomonas putida GB-1 5872782 YP_001671188.1 CDS PputGB1_4968 NC_010322.1 5542511 5544415 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(5542511..5544415) Pseudomonas putida GB-1 5872783 YP_001671189.1 CDS PputGB1_4969 NC_010322.1 5544450 5545058 R PFAM: protein of unknown function UPF0227; KEGG: pen:PSEEN4970 hypothetical protein; hypothetical protein complement(5544450..5545058) Pseudomonas putida GB-1 5872784 YP_001671190.1 CDS PputGB1_4970 NC_010322.1 5545169 5545969 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: pen:PSEEN4971 metallo-phosphoesterase; calcineurin phosphoesterase domain-containing protein complement(5545169..5545969) Pseudomonas putida GB-1 5872785 YP_001671191.1 CDS PputGB1_4971 NC_010322.1 5546055 5546501 R PFAM: protein of unknown function DUF1249; KEGG: pen:PSEEN4972 hypothetical protein; hypothetical protein complement(5546055..5546501) Pseudomonas putida GB-1 5872786 YP_001671192.1 CDS PputGB1_4972 NC_010322.1 5546498 5547115 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4973 hydrolase, MutT/NUDIX family; NUDIX hydrolase complement(5546498..5547115) Pseudomonas putida GB-1 5872787 YP_001671193.1 CDS PputGB1_4973 NC_010322.1 5547301 5548047 D KEGG: pen:PSEEN4975 lipoprotein; lipoprotein 5547301..5548047 Pseudomonas putida GB-1 5872788 YP_001671194.1 CDS PputGB1_4974 NC_010322.1 5548016 5549299 R TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN4976 transporter, NCS1 nucleoside transporter family; hydroxymethylpyrimidine transporter CytX complement(5548016..5549299) Pseudomonas putida GB-1 5872789 YP_001671195.1 CDS PputGB1_4975 NC_010322.1 5549465 5551345 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(5549465..5551345) Pseudomonas putida GB-1 5872790 YP_001671196.1 CDS PputGB1_4976 NC_010322.1 5551768 5553204 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4979 type I efflux secretion system outer membrane protein, TolC; TolC family type I secretion outer membrane protein 5551768..5553204 Pseudomonas putida GB-1 5872791 YP_001671197.1 CDS PputGB1_4977 NC_010322.1 5553295 5554566 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(5553295..5554566) Pseudomonas putida GB-1 5872792 YP_001671198.1 CDS PputGB1_4978 NC_010322.1 5554578 5555471 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4981 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5554578..5555471) Pseudomonas putida GB-1 5872793 YP_001671199.1 CDS PputGB1_4979 NC_010322.1 5555556 5555888 D PFAM: small multidrug resistance protein; KEGG: pen:PSEEN4982 multidrug efflux SMR transporter; small multidrug resistance protein 5555556..5555888 Pseudomonas putida GB-1 5872794 YP_001671200.1 CDS PputGB1_4980 NC_010322.1 5555967 5557142 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4983 oxidase, FAD-binding; FAD dependent oxidoreductase 5555967..5557142 Pseudomonas putida GB-1 5872795 YP_001671201.1 CDS PputGB1_4981 NC_010322.1 5557139 5557951 D PFAM: aldo/keto reductase; KEGG: pen:PSEEN4984 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 5557139..5557951 Pseudomonas putida GB-1 5872796 YP_001671202.1 CDS PputGB1_4982 NC_010322.1 5558004 5558972 D KEGG: pen:PSEEN4985 hypothetical protein; hypothetical protein 5558004..5558972 Pseudomonas putida GB-1 5872797 YP_001671203.1 CDS PputGB1_4983 NC_010322.1 5559003 5560424 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(5559003..5560424) Pseudomonas putida GB-1 5872798 YP_001671204.1 CDS PputGB1_4984 NC_010322.1 5560555 5562363 R KEGG: pen:PSEEN4987 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(5560555..5562363) Pseudomonas putida GB-1 5872799 YP_001671205.1 CDS PputGB1_4985 NC_010322.1 5562379 5563554 R PFAM: O-antigen polymerase; KEGG: pen:PSEEN4988 lipopolysaccharide core biosynthesis protein; O-antigen polymerase complement(5562379..5563554) Pseudomonas putida GB-1 5872800 YP_001671206.1 CDS PputGB1_4986 NC_010322.1 5563655 5564260 D KEGG: pen:PSEEN4989 toluene tolerance protein Ttg8; toluene tolerance protein Ttg8 5563655..5564260 Pseudomonas putida GB-1 5872801 YP_001671207.1 CDS PputGB1_4987 NC_010322.1 5564264 5565355 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4990 glycosyl transferase; glycosyl transferase group 1 protein complement(5564264..5565355) Pseudomonas putida GB-1 5872802 YP_001671208.1 CDS PputGB1_4988 NC_010322.1 5565393 5566166 R KEGG: pen:PSEEN4991 hypothetical protein; hypothetical protein complement(5565393..5566166) Pseudomonas putida GB-1 5872803 YP_001671209.1 CDS PputGB1_4989 NC_010322.1 5566232 5567188 R KEGG: pen:PSEEN4992 hypothetical protein; hypothetical protein complement(5566232..5567188) Pseudomonas putida GB-1 5872804 YP_001671210.1 CDS PputGB1_4990 NC_010322.1 5567237 5568640 R PFAM: LmbE family protein; KEGG: pen:PSEEN4993 hypothetical protein; LmbE family protein complement(5567237..5568640) Pseudomonas putida GB-1 5872805 YP_001671211.1 CDS PputGB1_4991 NC_010322.1 5568637 5569533 R PFAM: Mig-14 family protein; KEGG: pen:PSEEN4994 hypothetical protein; Mig-14 family protein complement(5568637..5569533) Pseudomonas putida GB-1 5872806 YP_001671212.1 CDS PputGB1_4992 NC_010322.1 5569533 5570663 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4995 glycosyl transferase; glycosyl transferase group 1 protein complement(5569533..5570663) Pseudomonas putida GB-1 5872807 YP_001671213.1 CDS PputGB1_4993 NC_010322.1 5570647 5572404 R PFAM: Carbamoyltransferase; KEGG: pen:PSEEN4996 carbamoyltransferase, NodU family; carbamoyltransferase complement(5570647..5572404) Pseudomonas putida GB-1 5872808 YP_001671214.1 CDS PputGB1_4994 NC_010322.1 5572512 5573348 R PFAM: protein of unknown function DUF519; KEGG: pen:PSEEN4997 hypothetical protein; hypothetical protein complement(5572512..5573348) Pseudomonas putida GB-1 5872809 YP_001671215.1 CDS PputGB1_4995 NC_010322.1 5573455 5574933 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pen:PSEEN4998 major sodium:proline symporter (SSS family); sodium/proline symporter complement(5573455..5574933) Pseudomonas putida GB-1 5872810 YP_001671216.1 CDS putA NC_010322.1 5575291 5579244 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 5575291..5579244 Pseudomonas putida GB-1 5872811 YP_001671217.1 CDS PputGB1_4997 NC_010322.1 5579747 5581549 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5579747..5581549 Pseudomonas putida GB-1 5872812 YP_001671218.1 CDS PputGB1_4998 NC_010322.1 5581581 5583023 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN5005 peptidase, TldD/PmbA family; peptidase U62 modulator of DNA gyrase 5581581..5583023 Pseudomonas putida GB-1 5872813 YP_001671219.1 CDS PputGB1_4999 NC_010322.1 5583023 5584342 D KEGG: pen:PSEEN5006 hypothetical protein; hypothetical protein 5583023..5584342 Pseudomonas putida GB-1 5872814 YP_001671220.1 CDS PputGB1_5000 NC_010322.1 5584470 5585897 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5007 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 5584470..5585897 Pseudomonas putida GB-1 5872815 YP_001671221.1 CDS PputGB1_5001 NC_010322.1 5585962 5587347 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 5585962..5587347 Pseudomonas putida GB-1 5872816 YP_001671222.1 CDS PputGB1_5002 NC_010322.1 5587476 5588657 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5009 hypothetical protein; hypothetical protein 5587476..5588657 Pseudomonas putida GB-1 5872817 YP_001671223.1 CDS PputGB1_5003 NC_010322.1 5588741 5590924 D TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pen:PSEEN5010 hypothetical protein; YccS/YhfK family integral membrane protein 5588741..5590924 Pseudomonas putida GB-1 5872818 YP_001671224.1 CDS PputGB1_5004 NC_010322.1 5590958 5591695 R KEGG: pen:PSEEN5011 amino acid ABC transporter, periplasmic amino acid-binding protein; amino acid ABC transporter periplasmic amino acid-binding protein complement(5590958..5591695) Pseudomonas putida GB-1 5872819 YP_001671225.1 CDS PputGB1_5005 NC_010322.1 5591849 5592301 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_5776 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5591849..5592301 Pseudomonas putida GB-1 5872820 YP_001671226.1 CDS PputGB1_5006 NC_010322.1 5592373 5592669 R KEGG: pen:PSEEN5015 hypothetical protein; hypothetical protein complement(5592373..5592669) Pseudomonas putida GB-1 5872821 YP_001671227.1 CDS PputGB1_5007 NC_010322.1 5592682 5593221 R PFAM: protein of unknown function DUF45; KEGG: pen:PSEEN5016 hypothetical protein; hypothetical protein complement(5592682..5593221) Pseudomonas putida GB-1 5872822 YP_001671228.1 CDS PputGB1_5008 NC_010322.1 5593222 5595348 R KEGG: pen:PSEEN5017 sensory box protein/response regulator (hybrid); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5593222..5595348) Pseudomonas putida GB-1 5872823 YP_001671229.1 CDS PputGB1_5009 NC_010322.1 5595561 5596625 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(5595561..5596625) Pseudomonas putida GB-1 5872824 YP_001671230.1 CDS PputGB1_5010 NC_010322.1 5596726 5597055 R KEGG: pen:PSEEN5020 lipoprotein; lipoprotein complement(5596726..5597055) Pseudomonas putida GB-1 5872825 YP_001671231.1 CDS PputGB1_5011 NC_010322.1 5597119 5597337 R KEGG: pen:PSEEN5021 hypothetical protein; hypothetical protein complement(5597119..5597337) Pseudomonas putida GB-1 5872826 YP_001671232.1 CDS pgk NC_010322.1 5597370 5598533 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(5597370..5598533) Pseudomonas putida GB-1 5872827 YP_001671233.1 CDS PputGB1_5013 NC_010322.1 5598546 5599607 R KEGG: pen:PSEEN5023 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase complement(5598546..5599607) Pseudomonas putida GB-1 5872828 YP_001671234.1 CDS PputGB1_5014 NC_010322.1 5599798 5601795 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(5599798..5601795) Pseudomonas putida GB-1 5872829 YP_001671235.1 CDS PputGB1_5015 NC_010322.1 5602025 5603017 D PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5025 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 5602025..5603017 Pseudomonas putida GB-1 5872830 YP_001671236.1 CDS PputGB1_5016 NC_010322.1 5603036 5604226 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 5603036..5604226 Pseudomonas putida GB-1 5872831 YP_001671237.1 CDS ligB NC_010322.1 5604372 5606072 D this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 5604372..5606072 Pseudomonas putida GB-1 5872832 YP_001671238.1 CDS PputGB1_5018 NC_010322.1 5606204 5606596 D PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein 5606204..5606596 Pseudomonas putida GB-1 5872833 YP_001671239.1 CDS PputGB1_5019 NC_010322.1 5606667 5607125 R KEGG: pen:PSEEN5029 cytochrome c'; cytochrome c' complement(5606667..5607125) Pseudomonas putida GB-1 5872834 YP_001671240.1 CDS PputGB1_5020 NC_010322.1 5607245 5608396 D PFAM: MltA domain protein; 3D domain protein; KEGG: pen:PSEEN5030 outer membrane-bound lytic murein transglycolase A; MltA domain-containing protein 5607245..5608396 Pseudomonas putida GB-1 5872835 YP_001671241.1 CDS PputGB1_5021 NC_010322.1 5608447 5608833 R KEGG: pen:PSEEN5031 hypothetical protein; hypothetical protein complement(5608447..5608833) Pseudomonas putida GB-1 5872836 YP_001671242.1 CDS PputGB1_5022 NC_010322.1 5608861 5609694 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5032 hypothetical protein; hypothetical protein complement(5608861..5609694) Pseudomonas putida GB-1 5872837 YP_001671243.1 CDS PputGB1_5023 NC_010322.1 5609875 5611110 D PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5033 Na+/H+ antiporter; sodium/hydrogen exchanger 5609875..5611110 Pseudomonas putida GB-1 5872838 YP_001671244.1 CDS PputGB1_5024 NC_010322.1 5611143 5611544 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5034 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein complement(5611143..5611544) Pseudomonas putida GB-1 5872839 YP_001671245.1 CDS PputGB1_5025 NC_010322.1 5611841 5613250 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 5611841..5613250 Pseudomonas putida GB-1 5872840 YP_001671246.1 CDS PputGB1_5026 NC_010322.1 5613373 5614218 D KEGG: pen:PSEEN5038 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 5613373..5614218 Pseudomonas putida GB-1 5872841 YP_001671247.1 CDS PputGB1_5027 NC_010322.1 5614312 5615388 D KEGG: pap:PSPA7_0529 hypothetical protein; hypothetical protein 5614312..5615388 Pseudomonas putida GB-1 5872842 YP_001671248.1 CDS PputGB1_5028 NC_010322.1 5615440 5616228 D SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein; extracellular solute-binding protein 5615440..5616228 Pseudomonas putida GB-1 5872843 YP_001671249.1 CDS PputGB1_5029 NC_010322.1 5616446 5618326 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN5042 ATP-dependent RNA helicase RhlE, DEAD box family; DEAD/DEAH box helicase 5616446..5618326 Pseudomonas putida GB-1 5872844 YP_001671250.1 CDS PputGB1_5030 NC_010322.1 5618412 5618990 R PFAM: YceI family protein; KEGG: pen:PSEEN5043 hypothetical protein; hypothetical protein complement(5618412..5618990) Pseudomonas putida GB-1 5872845 YP_001671251.1 CDS PputGB1_5031 NC_010322.1 5619023 5619574 R PFAM: cytochrome B561; KEGG: pen:PSEEN5044 cytochrome, b561 family; cytochrome B561 complement(5619023..5619574) Pseudomonas putida GB-1 5872846 YP_001671252.1 CDS PputGB1_5032 NC_010322.1 5619776 5621626 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN5045 flavin-containing monamine oxidase family protein; amine oxidase complement(5619776..5621626) Pseudomonas putida GB-1 5872847 YP_001671253.1 CDS PputGB1_5033 NC_010322.1 5621837 5622328 D KEGG: pen:PSEEN5046 hypothetical protein; hypothetical protein 5621837..5622328 Pseudomonas putida GB-1 5872848 YP_001671254.1 CDS PputGB1_5034 NC_010322.1 5622408 5623814 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 5622408..5623814 Pseudomonas putida GB-1 5872849 YP_001671255.1 CDS PputGB1_5035 NC_010322.1 5623989 5624708 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5623989..5624708 Pseudomonas putida GB-1 5872850 YP_001671256.1 CDS PputGB1_5036 NC_010322.1 5624709 5625326 R TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pen:PSEEN5049 hemolysin III; hemolysin III family channel protein complement(5624709..5625326) Pseudomonas putida GB-1 5872851 YP_001671257.1 CDS PputGB1_5037 NC_010322.1 5625388 5625861 R PFAM: CheW domain protein; KEGG: pen:PSEEN5050 chemotaxis protein; CheW domain-containing protein complement(5625388..5625861) Pseudomonas putida GB-1 5872852 YP_001671258.1 CDS PputGB1_5038 NC_010322.1 5625854 5630797 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN5051 sensor histidine kinase/response regulator ChpA; CheA signal transduction histidine kinase complement(5625854..5630797) Pseudomonas putida GB-1 5872853 YP_001671259.1 CDS PputGB1_5039 NC_010322.1 5630820 5632880 R PFAM: chemotaxis sensory transducer; KEGG: pen:PSEEN5052 type IV pili methyl-accepting chemotaxis transducer PilJ; methyl-accepting chemotaxis sensory transducer complement(5630820..5632880) Pseudomonas putida GB-1 5872854 YP_001671260.1 CDS PputGB1_5040 NC_010322.1 5632892 5633446 R PFAM: CheW domain protein; KEGG: pen:PSEEN5053 type IV pili signal transduction protein PilI; CheW protein complement(5632892..5633446) Pseudomonas putida GB-1 5872855 YP_001671261.1 CDS PputGB1_5041 NC_010322.1 5633443 5633808 R PFAM: response regulator receiver; KEGG: pen:PSEEN5054 type IV pili response regulator PilH; response regulator receiver protein complement(5633443..5633808) Pseudomonas putida GB-1 5872856 YP_001671262.1 CDS PputGB1_5042 NC_010322.1 5633856 5634257 R PFAM: response regulator receiver; KEGG: pen:PSEEN5055 type IV pili response regulator PilG; response regulator receiver protein complement(5633856..5634257) Pseudomonas putida GB-1 5872857 YP_001671263.1 CDS PputGB1_5043 NC_010322.1 5634412 5635365 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 5634412..5635365 Pseudomonas putida GB-1 5872858 YP_001671264.1 CDS PputGB1_5044 NC_010322.1 5635457 5636362 D TIGRFAM: TonB family protein; KEGG: pen:PSEEN5057 hypothetical protein; TonB family protein 5635457..5636362 Pseudomonas putida GB-1 5872859 YP_001671265.1 CDS PputGB1_5045 NC_010322.1 5636529 5637098 D PFAM: protein of unknown function DUF179; KEGG: pen:PSEEN5058 hypothetical protein; hypothetical protein 5636529..5637098 Pseudomonas putida GB-1 5872860 YP_001671266.1 CDS PputGB1_5046 NC_010322.1 5637098 5637523 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 5637098..5637523 Pseudomonas putida GB-1 5872861 YP_001671267.1 CDS PputGB1_5047 NC_010322.1 5637573 5638091 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 5637573..5638091 Pseudomonas putida GB-1 5872862 YP_001671268.1 CDS pyrB NC_010322.1 5638104 5639108 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 5638104..5639108 Pseudomonas putida GB-1 5872863 YP_001671269.1 CDS pyrC NC_010322.1 5639105 5640376 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 5639105..5640376 Pseudomonas putida GB-1 5872864 YP_001671270.2 CDS PputGB1_5050 NC_010322.1 5640634 5641164 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 5640634..5641164 Pseudomonas putida GB-1 5872865 YP_001671271.1 CDS hslU NC_010322.1 5641241 5642584 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 5641241..5642584 Pseudomonas putida GB-1 5872866 YP_001671272.1 CDS PputGB1_5052 NC_010322.1 5642673 5643050 D PFAM: protein of unknown function DUF971; KEGG: pen:PSEEN5065 hypothetical protein; hypothetical protein 5642673..5643050 Pseudomonas putida GB-1 5872867 YP_001671273.1 CDS PputGB1_5053 NC_010322.1 5643319 5644998 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5066 poly(3-hydroxyalkanoate) polymerase 1; class II poly(R)-hydroxyalkanoic acid synthase 5643319..5644998 Pseudomonas putida GB-1 5872868 YP_001671274.1 CDS PputGB1_5054 NC_010322.1 5645062 5645913 D TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5067 poly(3-hydroxyalkanoate) depolymerase; poly(3-hydroxyalkanoate) depolymerase 5645062..5645913 Pseudomonas putida GB-1 5872869 YP_001671275.1 CDS PputGB1_5055 NC_010322.1 5645966 5647648 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5068 poly(3-hydroxyalkanoate) polymerase 2; class II poly(R)-hydroxyalkanoic acid synthase 5645966..5647648 Pseudomonas putida GB-1 5872870 YP_001671276.1 CDS PputGB1_5056 NC_010322.1 5647662 5648276 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN5069 transcriptional regulator, TetR family; TetR family transcriptional regulator 5647662..5648276 Pseudomonas putida GB-1 5872871 YP_001671277.1 CDS PputGB1_5057 NC_010322.1 5648398 5649174 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5070 polyhydroxyalkanoate synthesis protein PhaF; poly(hydroxyalkanoate) granule-associated protein complement(5648398..5649174) Pseudomonas putida GB-1 5872872 YP_001671278.1 CDS PputGB1_5058 NC_010322.1 5649185 5649604 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5071 polyhydroxyalkanoate granule-associated protein GA1; poly(hydroxyalkanoate) granule-associated protein complement(5649185..5649604) Pseudomonas putida GB-1 5872873 YP_001671279.1 CDS PputGB1_5059 NC_010322.1 5649782 5654479 D KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein 5649782..5654479 Pseudomonas putida GB-1 5872874 YP_001671280.1 CDS PputGB1_5060 NC_010322.1 5654492 5654767 R TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: pen:PSEEN5072 hypothetical protein; polyhydroxyalkanoic acid system protein complement(5654492..5654767) Pseudomonas putida GB-1 5872875 YP_001671281.1 CDS ubiE NC_010322.1 5654892 5655662 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 5654892..5655662 Pseudomonas putida GB-1 5872876 YP_001671282.1 CDS PputGB1_5062 NC_010322.1 5655662 5656285 D PFAM: Sterol-binding domain protein; KEGG: pen:PSEEN5074 hypothetical protein; sterol-binding domain-containing protein 5655662..5656285 Pseudomonas putida GB-1 5872877 YP_001671283.1 CDS PputGB1_5063 NC_010322.1 5656282 5657904 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: pen:PSEEN5075 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; 2-polyprenylphenol 6-hydroxylase 5656282..5657904 Pseudomonas putida GB-1 5872878 YP_001671284.1 CDS hisI NC_010322.1 5657977 5658369 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5657977..5658369 Pseudomonas putida GB-1 5872879 YP_001671285.1 CDS hisE NC_010322.1 5658371 5658706 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5658371..5658706 Pseudomonas putida GB-1 5872880 YP_001671286.1 CDS tatA NC_010322.1 5658732 5659004 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 5658732..5659004 Pseudomonas putida GB-1 5872881 YP_001671287.1 CDS tatB NC_010322.1 5659008 5659385 D Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 5659008..5659385 Pseudomonas putida GB-1 5872882 YP_001671288.1 CDS PputGB1_5068 NC_010322.1 5659382 5660170 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pen:PSEEN5080 twin aqrginine translocase protein subunit C; Sec-independent protein translocase subunit TatC 5659382..5660170 Pseudomonas putida GB-1 5872883 YP_001671289.1 CDS PputGB1_5069 NC_010322.1 5660167 5660874 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 5660167..5660874 Pseudomonas putida GB-1 5872884 YP_001671290.1 CDS PputGB1_5070 NC_010322.1 5660976 5662892 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5082 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5660976..5662892 Pseudomonas putida GB-1 5872885 YP_001671291.1 CDS PputGB1_5071 NC_010322.1 5663055 5664998 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5084 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5663055..5664998 Pseudomonas putida GB-1 5872886 YP_001671292.1 CDS PputGB1_5072 NC_010322.1 5665033 5665767 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5085 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5665033..5665767) Pseudomonas putida GB-1 5872887 YP_001671293.1 CDS PputGB1_5073 NC_010322.1 5665760 5666722 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5086 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(5665760..5666722) Pseudomonas putida GB-1 5872888 YP_001671294.1 CDS PputGB1_5074 NC_010322.1 5666802 5667602 R PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN5087 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(5666802..5667602) Pseudomonas putida GB-1 5872889 YP_001671295.1 CDS PputGB1_5075 NC_010322.1 5667852 5670425 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(5667852..5670425) Pseudomonas putida GB-1 5872890 YP_001671296.1 CDS mdoG NC_010322.1 5670418 5672097 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(5670418..5672097) Pseudomonas putida GB-1 5872891 YP_001671297.1 CDS PputGB1_5077 NC_010322.1 5672421 5672858 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(5672421..5672858) Pseudomonas putida GB-1 5872892 YP_001671298.1 CDS PputGB1_5078 NC_010322.1 5672855 5673826 R KEGG: pen:PSEEN5092 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(5672855..5673826) Pseudomonas putida GB-1 5872893 YP_001671299.1 CDS PputGB1_5079 NC_010322.1 5673904 5674707 R PFAM: N-formylglutamate amidohydrolase; KEGG: pen:PSEEN5093 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(5673904..5674707) Pseudomonas putida GB-1 5872894 YP_001671300.1 CDS PputGB1_5080 NC_010322.1 5674718 5675923 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(5674718..5675923) Pseudomonas putida GB-1 5872895 YP_001671301.1 CDS PputGB1_5081 NC_010322.1 5675939 5677342 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5095 amino acid transporter; amino acid permease-associated protein complement(5675939..5677342) Pseudomonas putida GB-1 5872896 YP_001671302.1 CDS PputGB1_5082 NC_010322.1 5677501 5679033 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(5677501..5679033) Pseudomonas putida GB-1 5872897 YP_001671303.1 CDS PputGB1_5083 NC_010322.1 5679141 5680814 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(5679141..5680814) Pseudomonas putida GB-1 5872898 YP_001671304.1 CDS PputGB1_5084 NC_010322.1 5681210 5681782 R PFAM: protein of unknown function DUF886; KEGG: pen:PSEEN5098 hypothetical protein; hypothetical protein complement(5681210..5681782) Pseudomonas putida GB-1 5872899 YP_001671305.1 CDS PputGB1_5085 NC_010322.1 5681779 5682525 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN5099 histidine utilization repressor; histidine utilization repressor complement(5681779..5682525) Pseudomonas putida GB-1 5872900 YP_001671306.1 CDS PputGB1_5086 NC_010322.1 5682635 5683999 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 5682635..5683999 Pseudomonas putida GB-1 5872901 YP_001671307.1 CDS PputGB1_5087 NC_010322.1 5684031 5684603 R PFAM: Lipocalin family protein; KEGG: pen:PSEEN5102 outer membrane lipoprotein Blc; lipocalin family protein complement(5684031..5684603) Pseudomonas putida GB-1 5872902 YP_001671308.1 CDS PputGB1_5088 NC_010322.1 5684600 5684854 R KEGG: pen:PSEEN5103 lipoprotein; hypothetical protein complement(5684600..5684854) Pseudomonas putida GB-1 5872903 YP_001671309.1 CDS PputGB1_5089 NC_010322.1 5685077 5685673 R PFAM: protein of unknown function DUF924; KEGG: pen:PSEEN5105 hypothetical protein; hypothetical protein complement(5685077..5685673) Pseudomonas putida GB-1 5872904 YP_001671310.1 CDS PputGB1_5090 NC_010322.1 5685677 5686687 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(5685677..5686687) Pseudomonas putida GB-1 5872905 YP_001671311.1 CDS PputGB1_5091 NC_010322.1 5686944 5689394 R KEGG: pen:PSEEN5107 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(5686944..5689394) Pseudomonas putida GB-1 5872906 YP_001671312.1 CDS PputGB1_5092 NC_010322.1 5689579 5689983 D PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5108 hypothetical protein; hypothetical protein 5689579..5689983 Pseudomonas putida GB-1 5872907 YP_001671313.1 CDS PputGB1_5093 NC_010322.1 5690175 5690714 R hypothetical protein complement(5690175..5690714) Pseudomonas putida GB-1 5872908 YP_001671314.1 CDS PputGB1_5094 NC_010322.1 5690768 5691598 R hypothetical protein complement(5690768..5691598) Pseudomonas putida GB-1 5872909 YP_001671315.1 CDS PputGB1_5095 NC_010322.1 5691605 5692189 R KEGG: bte:BTH_II1428 hypothetical protein; hypothetical protein complement(5691605..5692189) Pseudomonas putida GB-1 5872910 YP_001671316.1 CDS PputGB1_5096 NC_010322.1 5692390 5694210 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pen:PSEEN0392 regulatory protein TypA; GTP-binding protein TypA complement(5692390..5694210) Pseudomonas putida GB-1 5872911 YP_001671317.1 CDS PputGB1_5097 NC_010322.1 5694339 5695793 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(5694339..5695793) Pseudomonas putida GB-1 5872912 YP_001671318.1 CDS PputGB1_5098 NC_010322.1 5696221 5697627 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: pfl:PFL_0386 glutamine synthetase, type I; glutamine synthetase, type I 5696221..5697627 Pseudomonas putida GB-1 5872913 YP_001671319.1 CDS PputGB1_5099 NC_010322.1 5697779 5698315 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: pen:PSEEN0389 chorismate mutase; chorismate mutase 5697779..5698315 Pseudomonas putida GB-1 5872914 YP_001671320.1 CDS PputGB1_5100 NC_010322.1 5698582 5699667 D KEGG: pen:PSEEN0387 sensory box histidine kinase NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 5698582..5699667 Pseudomonas putida GB-1 5872915 YP_001671321.1 CDS PputGB1_5101 NC_010322.1 5699664 5701100 D KEGG: pen:PSEEN0386 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 5699664..5701100 Pseudomonas putida GB-1 5872916 YP_001671322.1 CDS PputGB1_5102 NC_010322.1 5701560 5701946 R KEGG: pen:PSEEN0385 hypothetical protein; hypothetical protein complement(5701560..5701946) Pseudomonas putida GB-1 5872917 YP_001671323.1 CDS PputGB1_5103 NC_010322.1 5701996 5702457 D TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN0384 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 5701996..5702457 Pseudomonas putida GB-1 5872918 YP_001671324.1 CDS PputGB1_5104 NC_010322.1 5702516 5703001 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(5702516..5703001) Pseudomonas putida GB-1 5872919 YP_001671325.1 CDS PputGB1_5105 NC_010322.1 5703041 5703295 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pen:PSEEN0382 glutaredoxin; glutaredoxin 3 complement(5703041..5703295) Pseudomonas putida GB-1 5872920 YP_001671326.1 CDS PputGB1_5106 NC_010322.1 5703297 5703710 R PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0381 hypothetical protein; rhodanese domain-containing protein complement(5703297..5703710) Pseudomonas putida GB-1 5872921 YP_001671327.1 CDS PputGB1_5107 NC_010322.1 5703917 5705452 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 5703917..5705452 Pseudomonas putida GB-1 5872922 YP_001671328.1 CDS PputGB1_5108 NC_010322.1 5705595 5706911 D PFAM: peptidase M23B; KEGG: pen:PSEEN0379 metalloendopeptidase, M23/M37 family; peptidase M23B 5705595..5706911 Pseudomonas putida GB-1 5872923 YP_001671329.1 CDS PputGB1_5109 NC_010322.1 5706990 5708306 D KEGG: pen:PSEEN0378 carboxy-terminal processing protease precursor; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 5706990..5708306 Pseudomonas putida GB-1 5872924 YP_001671330.1 CDS PputGB1_5110 NC_010322.1 5708303 5709082 D PFAM: protein of unknown function DUF610 YibQ; KEGG: pen:PSEEN0377 hypothetical protein; hypothetical protein 5708303..5709082 Pseudomonas putida GB-1 5872925 YP_001671331.1 CDS PputGB1_5111 NC_010322.1 5709130 5713809 R KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein complement(5709130..5713809) Pseudomonas putida GB-1 5872926 YP_001671332.1 CDS PputGB1_5112 NC_010322.1 5713978 5715981 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0375 choline transporter BetT; choline/carnitine/betaine transporter complement(5713978..5715981) Pseudomonas putida GB-1 5872927 YP_001671333.1 CDS PputGB1_5113 NC_010322.1 5716458 5717114 D HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 5716458..5717114 Pseudomonas putida GB-1 5872928 YP_001671334.1 CDS PputGB1_5114 NC_010322.1 5717154 5718626 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 5717154..5718626 Pseudomonas putida GB-1 5872929 YP_001671335.1 CDS PputGB1_5115 NC_010322.1 5718704 5720401 D catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 5718704..5720401 Pseudomonas putida GB-1 5872930 YP_001671336.1 CDS PputGB1_5116 NC_010322.1 5720668 5722410 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 5720668..5722410 Pseudomonas putida GB-1 5872931 YP_001671337.1 CDS PputGB1_5117 NC_010322.1 5722446 5725754 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 5722446..5725754 Pseudomonas putida GB-1 5872932 YP_001671338.1 CDS PputGB1_5118 NC_010322.1 5725800 5727260 D PFAM: protein of unknown function UPF0061; KEGG: pen:PSEEN0369 hypothetical protein; hypothetical protein 5725800..5727260 Pseudomonas putida GB-1 5872933 YP_001671339.1 CDS PputGB1_5119 NC_010322.1 5727338 5727772 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0368 thioredoxin; thioredoxin 5727338..5727772 Pseudomonas putida GB-1 5872934 YP_001671340.1 CDS PputGB1_5120 NC_010322.1 5727769 5728542 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase complement(5727769..5728542) Pseudomonas putida GB-1 5872935 YP_001671341.1 CDS PputGB1_5121 NC_010322.1 5728619 5729518 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0342 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5728619..5729518) Pseudomonas putida GB-1 5872936 YP_001671342.1 CDS PputGB1_5122 NC_010322.1 5729627 5730871 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0341 transporter, MFS superfamily; major facilitator superfamily transporter 5729627..5730871 Pseudomonas putida GB-1 5872937 YP_001671343.1 CDS PputGB1_5123 NC_010322.1 5730906 5731253 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0340 hypothetical protein; hypothetical protein complement(5730906..5731253) Pseudomonas putida GB-1 5872938 YP_001671344.1 CDS hemE NC_010322.1 5731370 5732434 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(5731370..5732434) Pseudomonas putida GB-1 5872939 YP_001671345.1 CDS gltD NC_010322.1 5732563 5733981 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(5732563..5733981) Pseudomonas putida GB-1 5872940 YP_001671346.1 CDS gltB NC_010322.1 5734088 5738533 R catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha complement(5734088..5738533) Pseudomonas putida GB-1 5872941 YP_001671347.1 CDS PputGB1_5127 NC_010322.1 5738907 5740511 R PFAM: Sporulation domain protein; KEGG: pen:PSEEN0336 hypothetical protein; sporulation domain-containing protein complement(5738907..5740511) Pseudomonas putida GB-1 5872942 YP_001671348.1 CDS aroB NC_010322.1 5740527 5741657 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(5740527..5741657) Pseudomonas putida GB-1 5872943 YP_001671349.1 CDS aroK NC_010322.1 5741720 5742211 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(5741720..5742211) Pseudomonas putida GB-1 5872944 YP_001671350.1 CDS PputGB1_5130 NC_010322.1 5742243 5743505 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: pen:PSEEN0333 type IV pili biogenesis protein PilQ; type IV pilus secretin PilQ complement(5742243..5743505) Pseudomonas putida GB-1 5872945 YP_001671351.1 CDS PputGB1_5131 NC_010322.1 5743435 5744445 R KEGG: pen:PSEEN0332 type IV pili biogenesis protein PilP; type IV pili biogenesis protein PilP complement(5743435..5744445) Pseudomonas putida GB-1 5872946 YP_001671352.1 CDS PputGB1_5132 NC_010322.1 5744442 5744978 R PFAM: Fimbrial assembly family protein; KEGG: pen:PSEEN0331 type IV pili biogenesis protein PilN; fimbrial assembly family protein complement(5744442..5744978) Pseudomonas putida GB-1 5872947 YP_001671353.1 CDS PputGB1_5133 NC_010322.1 5744975 5745856 R KEGG: pen:PSEEN0330 type IV pili biogenesis protein PilM; type IV pili biogenesis protein PilM complement(5744975..5745856) Pseudomonas putida GB-1 5872948 YP_001671354.1 CDS PputGB1_5134 NC_010322.1 5746035 5748488 D KEGG: pen:PSEEN0328 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 5746035..5748488 Pseudomonas putida GB-1 5872949 YP_001671355.1 CDS PputGB1_5135 NC_010322.1 5748672 5749949 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase complement(5748672..5749949) Pseudomonas putida GB-1 5872950 YP_001671356.1 CDS PputGB1_5136 NC_010322.1 5750118 5750939 R PFAM: nuclease (SNase domain protein); KEGG: pen:PSEEN0326 nuclease, staphylococcal nuclease homologue; nuclease complement(5750118..5750939) Pseudomonas putida GB-1 5872951 YP_001671357.1 CDS rpmE NC_010322.1 5750942 5751157 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(5750942..5751157) Pseudomonas putida GB-1 5872952 YP_001671358.1 CDS PputGB1_5138 NC_010322.1 5751325 5753544 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 5751325..5753544 Pseudomonas putida GB-1 5872953 YP_001671359.1 CDS argS NC_010322.1 5753665 5755401 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5753665..5755401 Pseudomonas putida GB-1 5872954 YP_001671360.1 CDS PputGB1_5140 NC_010322.1 5755403 5756101 D PFAM: Sporulation domain protein; KEGG: pen:PSEEN0322 hypothetical protein; sporulation domain-containing protein 5755403..5756101 Pseudomonas putida GB-1 5872955 YP_001671361.1 CDS PputGB1_5141 NC_010322.1 5756139 5756558 R PFAM: TM2 domain containing protein?; KEGG: pen:PSEEN0321 hypothetical protein; TM2 domain-containing protein complement(5756139..5756558) Pseudomonas putida GB-1 5872956 YP_001671362.1 CDS PputGB1_5142 NC_010322.1 5756725 5757351 D PFAM: NLP/P60 protein; KEGG: pen:PSEEN0320 hypothetical protein; NLP/P60 protein 5756725..5757351 Pseudomonas putida GB-1 5872957 YP_001671363.1 CDS PputGB1_5143 NC_010322.1 5757463 5758461 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pen:PSEEN0319 type IV pili twitching motility protein PilT; twitching motility protein complement(5757463..5758461) Pseudomonas putida GB-1 5872958 YP_001671364.1 CDS PputGB1_5144 NC_010322.1 5758527 5759213 D PFAM: alanine racemase domain protein; KEGG: pen:PSEEN0318 hypothetical protein; alanine racemase domain-containing protein 5758527..5759213 Pseudomonas putida GB-1 5872959 YP_001671365.1 CDS PputGB1_5145 NC_010322.1 5759252 5760070 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 5759252..5760070 Pseudomonas putida GB-1 5872960 YP_001671366.1 CDS PputGB1_5146 NC_010322.1 5760081 5760671 D PFAM: protein of unknown function YGGT; KEGG: pen:PSEEN0316 hypothetical protein; hypothetical protein 5760081..5760671 Pseudomonas putida GB-1 5872961 YP_001671367.1 CDS metX NC_010322.1 5760760 5761899 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 5760760..5761899 Pseudomonas putida GB-1 5872962 YP_001671368.1 CDS PputGB1_5148 NC_010322.1 5761907 5762527 D TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0314 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW 5761907..5762527 Pseudomonas putida GB-1 5872963 YP_001671369.1 CDS PputGB1_5149 NC_010322.1 5762550 5762984 D KEGG: pen:PSEEN0313 hypothetical protein; hypothetical protein 5762550..5762984 Pseudomonas putida GB-1 5872964 YP_001671370.1 CDS PputGB1_5150 NC_010322.1 5762981 5763577 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 5762981..5763577 Pseudomonas putida GB-1 5872965 YP_001671371.1 CDS PputGB1_5151 NC_010322.1 5763574 5764749 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 5763574..5764749 Pseudomonas putida GB-1 5872966 YP_001671372.1 CDS PputGB1_5152 NC_010322.1 5764759 5765085 D KEGG: pen:PSEEN0310 hypothetical protein; hypothetical protein 5764759..5765085 Pseudomonas putida GB-1 5872967 YP_001671373.1 CDS trmB NC_010322.1 5765737 5766459 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(5765737..5766459) Pseudomonas putida GB-1 5872968 YP_001671374.1 CDS thiG NC_010322.1 5766469 5767281 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(5766469..5767281) Pseudomonas putida GB-1 5872969 YP_001671375.1 CDS PputGB1_5155 NC_010322.1 5767336 5767536 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS complement(5767336..5767536) Pseudomonas putida GB-1 5872970 YP_001671376.1 CDS PputGB1_5156 NC_010322.1 5767639 5768010 R PFAM: protein of unknown function DUF423; KEGG: pen:PSEEN0305 hypothetical protein; hypothetical protein complement(5767639..5768010) Pseudomonas putida GB-1 5872971 YP_001671377.1 CDS mtgA NC_010322.1 5768075 5768785 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 5768075..5768785 Pseudomonas putida GB-1 5872972 YP_001671378.1 CDS PputGB1_5158 NC_010322.1 5768965 5769819 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(5768965..5769819) Pseudomonas putida GB-1 5872973 YP_001671379.1 CDS PputGB1_5159 NC_010322.1 5769931 5770956 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0302 cell division protein FtsX; hypothetical protein complement(5769931..5770956) Pseudomonas putida GB-1 5872974 YP_001671380.1 CDS PputGB1_5160 NC_010322.1 5770953 5771624 R KEGG: pen:PSEEN0301 cell division ATP binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(5770953..5771624) Pseudomonas putida GB-1 5872975 YP_001671381.1 CDS PputGB1_5161 NC_010322.1 5771627 5773159 R KEGG: pen:PSEEN0300 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(5771627..5773159) Pseudomonas putida GB-1 5872976 YP_001671382.1 CDS PputGB1_5162 NC_010322.1 5773391 5774746 D PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0299 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 5773391..5774746 Pseudomonas putida GB-1 5872977 YP_001671383.1 CDS PputGB1_5163 NC_010322.1 5774739 5776229 D PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0298 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 5774739..5776229 Pseudomonas putida GB-1 5872978 YP_001671384.1 CDS PputGB1_5164 NC_010322.1 5776229 5776831 D TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0297 methyltransferase; methyltransferase 5776229..5776831 Pseudomonas putida GB-1 5872979 YP_001671385.1 CDS PputGB1_5165 NC_010322.1 5776924 5778225 D PFAM: peptidase M16 domain protein; KEGG: pmy:Pmen_4176 peptidase M16 domain protein; peptidase M16 domain-containing protein 5776924..5778225 Pseudomonas putida GB-1 5872980 YP_001671386.1 CDS PputGB1_5166 NC_010322.1 5778218 5779591 D PFAM: peptidase M16 domain protein; KEGG: psp:PSPPH_4783 peptidase, M16 family; peptidase M16 domain-containing protein 5778218..5779591 Pseudomonas putida GB-1 5872981 YP_001671387.1 CDS PputGB1_5167 NC_010322.1 5779652 5780644 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN0296 hydrolase, alpha/beta superfamily; alpha/beta hydrolase fold family protein 5779652..5780644 Pseudomonas putida GB-1 5872982 YP_001671388.1 CDS PputGB1_5168 NC_010322.1 5780657 5781511 R PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0295 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein complement(5780657..5781511) Pseudomonas putida GB-1 5872983 YP_001671389.1 CDS PputGB1_5169 NC_010322.1 5781547 5782212 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN0294 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(5781547..5782212) Pseudomonas putida GB-1 5872984 YP_001671390.1 CDS PputGB1_5170 NC_010322.1 5782364 5783794 D PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN0293 coniferyl aldehyde dehydrogenase (CALDH); aldehyde dehydrogenase 5782364..5783794 Pseudomonas putida GB-1 5872985 YP_001671391.1 CDS PputGB1_5171 NC_010322.1 5783805 5784290 D KEGG: pen:PSEEN0292 hypothetical protein; hypothetical protein 5783805..5784290 Pseudomonas putida GB-1 5872986 YP_001671392.1 CDS PputGB1_5172 NC_010322.1 5784311 5785909 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0291 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 5784311..5785909 Pseudomonas putida GB-1 5872987 YP_001671393.1 CDS coaD NC_010322.1 5786022 5786501 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 5786022..5786501 Pseudomonas putida GB-1 5872988 YP_001671394.1 CDS PputGB1_5174 NC_010322.1 5786609 5786860 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0289 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin 5786609..5786860 Pseudomonas putida GB-1 5872989 YP_001671395.1 CDS PputGB1_5175 NC_010322.1 5787009 5787821 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(5787009..5787821) Pseudomonas putida GB-1 5872990 YP_001671396.1 CDS PputGB1_5176 NC_010322.1 5787825 5788697 R PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0286 hypothetical protein; putative signal transduction protein complement(5787825..5788697) Pseudomonas putida GB-1 5872991 YP_001671397.1 CDS PputGB1_5177 NC_010322.1 5788826 5790022 D KEGG: pen:PSEEN0284 hypothetical protein; hypothetical protein 5788826..5790022 Pseudomonas putida GB-1 5872992 YP_001671398.1 CDS PputGB1_5178 NC_010322.1 5790294 5792135 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 5790294..5792135 Pseudomonas putida GB-1 5872993 YP_001671399.1 CDS PputGB1_5181 NC_010322.1 5793285 5793824 R KEGG: pen:PSEEN0280 hypothetical protein; hypothetical protein complement(5793285..5793824) Pseudomonas putida GB-1 5872995 YP_001671400.1 CDS PputGB1_5182 NC_010322.1 5793970 5795025 R KEGG: pen:PSEEN0278 hypothetical protein; hypothetical protein complement(5793970..5795025) Pseudomonas putida GB-1 5872996 YP_001671401.1 CDS PputGB1_5183 NC_010322.1 5795270 5796661 D PFAM: sodium:dicarboxylate symporter; KEGG: pen:PSEEN0277 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 5795270..5796661 Pseudomonas putida GB-1 5872997 YP_001671402.1 CDS PputGB1_5184 NC_010322.1 5796697 5797212 R PFAM: dihydrofolate reductase region; KEGG: pen:PSEEN0273 dihydrofolate reductase type I, trimethoprim resistance; dihydrofolate reductase complement(5796697..5797212) Pseudomonas putida GB-1 5872998 YP_001671403.1 CDS PputGB1_5185 NC_010322.1 5797267 5798658 D KEGG: pen:PSEEN0272 hypothetical protein; hypothetical protein 5797267..5798658 Pseudomonas putida GB-1 5872999 YP_001671404.1 CDS PputGB1_5186 NC_010322.1 5798651 5800015 D PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN0271 hypothetical protein; HSR1-like GTP-binding protein 5798651..5800015 Pseudomonas putida GB-1 5873000 YP_001671405.1 CDS PputGB1_5187 NC_010322.1 5800033 5800581 R TIGRFAM: metal dependent phophohydrolase; phosphonate degradation operons associated HDIG domain protein; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pen:PSEEN0270 hypothetical protein; metal dependent phosphohydrolase complement(5800033..5800581) Pseudomonas putida GB-1 5873001 YP_001671406.1 CDS PputGB1_5188 NC_010322.1 5800656 5801681 R TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0269 ABC transporter, periplasmic binding protein; 2-aminoethylphosphonate ABC transporter substrate-binding protein complement(5800656..5801681) Pseudomonas putida GB-1 5873002 YP_001671407.1 CDS PputGB1_5189 NC_010322.1 5801700 5803424 R TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0268 ABC transporter, permease protein; 2-aminoethylphosphonate ABC transport system, permease complement(5801700..5803424) Pseudomonas putida GB-1 5873003 YP_001671408.1 CDS PputGB1_5190 NC_010322.1 5803426 5804484 R KEGG: pen:PSEEN0267 ABC transporter, ATP-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein complement(5803426..5804484) Pseudomonas putida GB-1 5873004 YP_001671409.1 CDS PputGB1_5191 NC_010322.1 5804719 5805588 R TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5231 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5804719..5805588) Pseudomonas putida GB-1 5873005 YP_001671410.1 CDS PputGB1_5192 NC_010322.1 5805598 5807850 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN5232 cadmium translocating P-type ATPase; heavy metal translocating P-type ATPase complement(5805598..5807850) Pseudomonas putida GB-1 5873006 YP_001671411.1 CDS PputGB1_5193 NC_010322.1 5807933 5808376 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN5233 transcriptional regulator CadR; MerR family transcriptional regulator 5807933..5808376 Pseudomonas putida GB-1 5873007 YP_001671412.1 CDS thyA NC_010322.1 5808419 5809390 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(5808419..5809390) Pseudomonas putida GB-1 5873008 YP_001671413.1 CDS PputGB1_5195 NC_010322.1 5809442 5810248 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(5809442..5810248) Pseudomonas putida GB-1 5873009 YP_001671414.1 CDS PputGB1_5196 NC_010322.1 5810265 5811047 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN5236 hypothetical protein; hypothetical protein complement(5810265..5811047) Pseudomonas putida GB-1 5873010 YP_001671415.1 CDS PputGB1_5197 NC_010322.1 5811177 5811923 D PFAM: protein of unknown function DUF833; KEGG: pen:PSEEN5237 hypothetical protein; hypothetical protein 5811177..5811923 Pseudomonas putida GB-1 5873011 YP_001671416.1 CDS PputGB1_5198 NC_010322.1 5811956 5814235 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN5238 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase PtsP complement(5811956..5814235) Pseudomonas putida GB-1 5873012 YP_001671417.1 CDS PputGB1_5199 NC_010322.1 5814258 5814737 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(5814258..5814737) Pseudomonas putida GB-1 5873013 YP_001671418.1 CDS PputGB1_5200 NC_010322.1 5814879 5815535 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5240 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 5814879..5815535 Pseudomonas putida GB-1 5873014 YP_001671419.1 CDS PputGB1_5201 NC_010322.1 5815652 5816077 R KEGG: pen:PSEEN5241 hypothetical protein; hypothetical protein complement(5815652..5816077) Pseudomonas putida GB-1 5873015 YP_001671420.1 CDS PputGB1_5202 NC_010322.1 5816116 5817630 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(5816116..5817630) Pseudomonas putida GB-1 5873016 YP_001671421.1 CDS PputGB1_5203 NC_010322.1 5817764 5818438 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 5817764..5818438 Pseudomonas putida GB-1 5873017 YP_001671422.1 CDS PputGB1_5204 NC_010322.1 5818554 5819456 R PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5244 hypothetical protein; SdiA-regulated domain-containing protein complement(5818554..5819456) Pseudomonas putida GB-1 5873018 YP_001671423.1 CDS PputGB1_5205 NC_010322.1 5819547 5820464 R PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5245 hypothetical protein; SdiA-regulated domain-containing protein complement(5819547..5820464) Pseudomonas putida GB-1 5873019 YP_001671424.1 CDS PputGB1_5206 NC_010322.1 5820646 5821311 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pen:PSEEN5246 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(5820646..5821311) Pseudomonas putida GB-1 5873020 YP_001671425.1 CDS PputGB1_5207 NC_010322.1 5821333 5822730 R PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN5247 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein complement(5821333..5822730) Pseudomonas putida GB-1 5873021 YP_001671426.1 CDS PputGB1_5208 NC_010322.1 5822902 5824131 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 5822902..5824131 Pseudomonas putida GB-1 5873022 YP_001671427.1 CDS PputGB1_5209 NC_010322.1 5824178 5824654 R KEGG: pen:PSEEN5249 hypothetical protein; hypothetical protein complement(5824178..5824654) Pseudomonas putida GB-1 5873023 YP_001671428.1 CDS PputGB1_5210 NC_010322.1 5824878 5825369 D KEGG: pen:PSEEN5250 periplasmic binding protein from ABC-type transporter; hypothetical protein 5824878..5825369 Pseudomonas putida GB-1 5873024 YP_001671429.1 CDS PputGB1_5211 NC_010322.1 5825431 5825934 R PFAM: protein of unknown function DUF523; KEGG: pfo:Pfl_5390 protein of unknown function DUF523; hypothetical protein complement(5825431..5825934) Pseudomonas putida GB-1 5873025 YP_001671430.1 CDS PputGB1_5212 NC_010322.1 5825921 5826556 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN5252 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase complement(5825921..5826556) Pseudomonas putida GB-1 5873026 YP_001671431.1 CDS PputGB1_5213 NC_010322.1 5826667 5827419 D KEGG: pen:PSEEN5253 hypothetical protein; hypothetical protein 5826667..5827419 Pseudomonas putida GB-1 5873027 YP_001671432.1 CDS PputGB1_5214 NC_010322.1 5827420 5828346 R KEGG: pen:PSEEN5254 lipase; lipase complement(5827420..5828346) Pseudomonas putida GB-1 5873028 YP_001671433.1 CDS PputGB1_5215 NC_010322.1 5828595 5829164 D KEGG: pen:PSEEN5255 hypothetical protein; hypothetical protein 5828595..5829164 Pseudomonas putida GB-1 5873029 YP_001671434.1 CDS PputGB1_5216 NC_010322.1 5829143 5829709 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; hexapaptide repeat-containing transferase complement(5829143..5829709) Pseudomonas putida GB-1 5873030 YP_001671435.1 CDS PputGB1_5217 NC_010322.1 5829797 5832160 D PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN5257 penicillin amidase; peptidase S45 penicillin amidase 5829797..5832160 Pseudomonas putida GB-1 5873031 YP_001671436.1 CDS PputGB1_5218 NC_010322.1 5832196 5833068 R PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5258 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein complement(5832196..5833068) Pseudomonas putida GB-1 5873032 YP_001671437.1 CDS PputGB1_5219 NC_010322.1 5833065 5833838 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5259 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5833065..5833838) Pseudomonas putida GB-1 5873033 YP_001671438.1 CDS PputGB1_5220 NC_010322.1 5833835 5834494 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5260 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(5833835..5834494) Pseudomonas putida GB-1 5873034 YP_001671439.1 CDS PputGB1_5221 NC_010322.1 5834475 5835140 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5261 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(5834475..5835140) Pseudomonas putida GB-1 5873035 YP_001671440.1 CDS PputGB1_5222 NC_010322.1 5835464 5836249 R PFAM: NLPA lipoprotein; KEGG: pen:PSEEN5262 lipoprotein; NLPA lipoprotein complement(5835464..5836249) Pseudomonas putida GB-1 5873036 YP_001671441.1 CDS PputGB1_5223 NC_010322.1 5836425 5837255 R PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(5836425..5837255) Pseudomonas putida GB-1 5873037 YP_001671442.1 CDS PputGB1_5224 NC_010322.1 5837320 5837901 R PFAM: protein of unknown function DUF1234; KEGG: pen:PSEEN5264 hypothetical protein; hypothetical protein complement(5837320..5837901) Pseudomonas putida GB-1 5873038 YP_001671443.1 CDS PputGB1_5225 NC_010322.1 5838096 5838497 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN5278 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(5838096..5838497) Pseudomonas putida GB-1 5873039 YP_001671444.1 CDS PputGB1_5226 NC_010322.1 5838499 5839218 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5279 biopolymer transport protein ExbB; MotA/TolQ/ExbB proton channel complement(5838499..5839218) Pseudomonas putida GB-1 5873040 YP_001671445.1 CDS PputGB1_5227 NC_010322.1 5839249 5840049 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pen:PSEEN5280 TonB-like protein; TonB family protein complement(5839249..5840049) Pseudomonas putida GB-1 5873041 YP_001671446.1 CDS PputGB1_5228 NC_010322.1 5840453 5841442 R KEGG: pen:PSEEN5281 sulfate/thiosulfate import ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(5840453..5841442) Pseudomonas putida GB-1 5873042 YP_001671447.1 CDS PputGB1_5229 NC_010322.1 5841446 5842318 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5282 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease complement(5841446..5842318) Pseudomonas putida GB-1 5873043 YP_001671448.1 CDS PputGB1_5230 NC_010322.1 5842330 5843148 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5283 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease complement(5842330..5843148) Pseudomonas putida GB-1 5873044 YP_001671449.1 CDS PputGB1_5231 NC_010322.1 5843334 5844341 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5284 sulfate/thiosulfate import ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein complement(5843334..5844341) Pseudomonas putida GB-1 5873045 YP_001671450.1 CDS PputGB1_5232 NC_010322.1 5844390 5844572 R KEGG: pfl:PFL_0191 hypothetical protein; hypothetical protein complement(5844390..5844572) Pseudomonas putida GB-1 5873046 YP_001671451.1 CDS PputGB1_5233 NC_010322.1 5844767 5847829 R PFAM: acriflavin resistance protein; KEGG: pen:PSEEN5287 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein complement(5844767..5847829) Pseudomonas putida GB-1 5873047 YP_001671452.1 CDS PputGB1_5234 NC_010322.1 5847826 5848893 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5288 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit complement(5847826..5848893) Pseudomonas putida GB-1 5873048 YP_001671453.1 CDS PputGB1_5235 NC_010322.1 5848890 5849978 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5289 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit complement(5848890..5849978) Pseudomonas putida GB-1 5873049 YP_001671454.1 CDS PputGB1_5236 NC_010322.1 5850283 5850738 D KEGG: pen:PSEEN3227 hypothetical protein; hypothetical protein 5850283..5850738 Pseudomonas putida GB-1 5873050 YP_001671455.1 CDS PputGB1_5237 NC_010322.1 5850846 5851739 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5291 putrescine ABC transporter, permease protein; ornithine carbamoyltransferase complement(5850846..5851739) Pseudomonas putida GB-1 5873051 YP_001671456.1 CDS PputGB1_5238 NC_010322.1 5851736 5852656 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5292 putrescine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5851736..5852656) Pseudomonas putida GB-1 5873052 YP_001671457.1 CDS PputGB1_5239 NC_010322.1 5852653 5853795 R KEGG: pen:PSEEN5293 puttaive putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(5852653..5853795) Pseudomonas putida GB-1 5873053 YP_001671458.1 CDS PputGB1_5240 NC_010322.1 5853856 5854950 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5294 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein complement(5853856..5854950) Pseudomonas putida GB-1 5873054 YP_001671459.1 CDS PputGB1_5241 NC_010322.1 5855109 5856206 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5295 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein complement(5855109..5856206) Pseudomonas putida GB-1 5873055 YP_001671460.1 CDS PputGB1_5242 NC_010322.1 5856377 5857738 R PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase complement(5856377..5857738) Pseudomonas putida GB-1 5873056 YP_001671461.1 CDS PputGB1_5243 NC_010322.1 5857787 5859145 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5297 glutamine synthetase; glutamate--putrescine ligase complement(5857787..5859145) Pseudomonas putida GB-1 5873057 YP_001671462.1 CDS PputGB1_5244 NC_010322.1 5859720 5861096 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5299 glutamine synthetase; glutamate--putrescine ligase 5859720..5861096 Pseudomonas putida GB-1 5873058 YP_001671463.1 CDS PputGB1_5245 NC_010322.1 5861248 5862546 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(5861248..5862546) Pseudomonas putida GB-1 5873059 YP_001671464.1 CDS PputGB1_5246 NC_010322.1 5862671 5863813 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(5862671..5863813) Pseudomonas putida GB-1 5873060 YP_001671465.1 CDS PputGB1_5247 NC_010322.1 5863931 5865298 D PFAM: adenylate cyclase; KEGG: pen:PSEEN5302 adenylate cyclase; adenylate cyclase 5863931..5865298 Pseudomonas putida GB-1 5873061 YP_001671466.1 CDS PputGB1_5248 NC_010322.1 5865472 5865942 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5303 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(5865472..5865942) Pseudomonas putida GB-1 5873062 YP_001671467.1 CDS PputGB1_5249 NC_010322.1 5866069 5866374 D KEGG: pen:PSEEN5304 hypothetical protein; hypothetical protein 5866069..5866374 Pseudomonas putida GB-1 5873063 YP_001671468.1 CDS PputGB1_5250 NC_010322.1 5866485 5868158 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pen:PSEEN5305 type II secretion system protein E; type II secretion system protein E 5866485..5868158 Pseudomonas putida GB-1 5873064 YP_001671469.1 CDS PputGB1_5251 NC_010322.1 5868247 5868561 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5306 hypothetical protein; hypothetical protein 5868247..5868561 Pseudomonas putida GB-1 5873065 YP_001671470.1 CDS PputGB1_5252 NC_010322.1 5868613 5871486 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(5868613..5871486) Pseudomonas putida GB-1 5873066 YP_001671471.1 CDS PputGB1_5253 NC_010322.1 5871619 5872002 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(5871619..5872002) Pseudomonas putida GB-1 5873067 YP_001671472.1 CDS gcvT NC_010322.1 5872054 5873136 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(5872054..5873136) Pseudomonas putida GB-1 5873068 YP_001671473.1 CDS PputGB1_5255 NC_010322.1 5873260 5874882 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5310 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5873260..5874882) Pseudomonas putida GB-1 5873069 YP_001671474.1 CDS PputGB1_5256 NC_010322.1 5875043 5876044 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5311 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein complement(5875043..5876044) Pseudomonas putida GB-1 5873070 YP_001671475.1 CDS PputGB1_5257 NC_010322.1 5876263 5877486 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(5876263..5877486) Pseudomonas putida GB-1 5873071 YP_001671476.1 CDS PputGB1_5258 NC_010322.1 5877490 5877972 R KEGG: pen:PSEEN5313 hypothetical protein; hypothetical protein complement(5877490..5877972) Pseudomonas putida GB-1 5873072 YP_001671477.1 CDS PputGB1_5259 NC_010322.1 5877969 5879168 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(5877969..5879168) Pseudomonas putida GB-1 5873073 YP_001671478.1 CDS PputGB1_5260 NC_010322.1 5879165 5880499 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pen:PSEEN5315 aminopeptidase P; peptidase M24 complement(5879165..5880499) Pseudomonas putida GB-1 5873074 YP_001671479.1 CDS PputGB1_5261 NC_010322.1 5880521 5881075 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(5880521..5881075) Pseudomonas putida GB-1 5873075 YP_001671480.1 CDS PputGB1_5262 NC_010322.1 5881221 5881439 D KEGG: pen:PSEEN5317 hypothetical protein; hypothetical protein 5881221..5881439 Pseudomonas putida GB-1 5873076 YP_001671481.1 CDS PputGB1_5263 NC_010322.1 5881436 5881756 D PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5318 hypothetical protein; hypothetical protein 5881436..5881756 Pseudomonas putida GB-1 5873077 YP_001671482.1 CDS PputGB1_5264 NC_010322.1 5882039 5882647 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pen:PSEEN5319 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5882039..5882647 Pseudomonas putida GB-1 5873079 YP_001671483.1 CDS PputGB1_5265 NC_010322.1 5882666 5882818 R KEGG: pen:PSEEN5320 hypothetical protein; hypothetical protein complement(5882666..5882818) Pseudomonas putida GB-1 5873080 YP_001671484.1 CDS PputGB1_5266 NC_010322.1 5882998 5883459 D PFAM: protein of unknown function DUF55; KEGG: pfo:Pfl_5440 protein of unknown function DUF589; hypothetical protein 5882998..5883459 Pseudomonas putida GB-1 5873081 YP_001671485.1 CDS PputGB1_5267 NC_010322.1 5883543 5884502 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5322 membrane fusion protein; secretion protein HlyD family protein 5883543..5884502 Pseudomonas putida GB-1 5873082 YP_001671486.1 CDS PputGB1_5268 NC_010322.1 5884499 5887219 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: pen:PSEEN5323 ribosome-associated ATPase, ATP-binding domain (N-terminal); ABC transporter-like protein 5884499..5887219 Pseudomonas putida GB-1 5873083 YP_001671487.1 CDS PputGB1_5269 NC_010322.1 5887221 5888333 D PFAM: ABC-2 type transporter; KEGG: pen:PSEEN5324 ABC transporter, permease protein; ABC transporter 5887221..5888333 Pseudomonas putida GB-1 5873084 YP_001671488.1 CDS PputGB1_5270 NC_010322.1 5888427 5888831 R PFAM: flagellar basal body-associated protein FliL; KEGG: pen:PSEEN5325 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(5888427..5888831) Pseudomonas putida GB-1 5873085 YP_001671489.1 CDS PputGB1_5271 NC_010322.1 5888989 5889966 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 5888989..5889966 Pseudomonas putida GB-1 5873086 YP_001671490.1 CDS PputGB1_5272 NC_010322.1 5890020 5890670 R PFAM: ChaC family protein; KEGG: pen:PSEEN5327 transporter, ChaC-related; ChaC family protein complement(5890020..5890670) Pseudomonas putida GB-1 5873087 YP_001671491.1 CDS PputGB1_5273 NC_010322.1 5890917 5891885 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(5890917..5891885) Pseudomonas putida GB-1 5873088 YP_001671492.1 CDS PputGB1_5274 NC_010322.1 5891885 5893351 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pen:PSEEN5330 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase complement(5891885..5893351) Pseudomonas putida GB-1 5873089 YP_001671493.1 CDS rho NC_010322.1 5893475 5894734 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(5893475..5894734) Pseudomonas putida GB-1 5873090 YP_001671494.1 CDS PputGB1_5276 NC_010322.1 5894962 5895288 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pfo:Pfl_5457 thioredoxin; thioredoxin complement(5894962..5895288) Pseudomonas putida GB-1 5873091 YP_001671495.1 CDS PputGB1_5277 NC_010322.1 5895545 5897047 D PFAM: Ppx/GppA phosphatase; KEGG: pen:PSEEN5335 exopolyphosphatase (ExopolyPase) (metaphosphatase); Ppx/GppA phosphatase 5895545..5897047 Pseudomonas putida GB-1 5873092 YP_001671496.1 CDS PputGB1_5278 NC_010322.1 5897034 5899277 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(5897034..5899277) Pseudomonas putida GB-1 5873093 YP_001671497.1 CDS PputGB1_5280 NC_010322.1 5899968 5901263 R PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN5339 hypothetical protein; fatty acid hydroxylase complement(5899968..5901263) Pseudomonas putida GB-1 5873095 YP_001671498.1 CDS PputGB1_5281 NC_010322.1 5901376 5902035 D PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN5340 enhancing lycopene biosynthesis protein 2; isoprenoid biosynthesis protein with amidotransferase-like domain 5901376..5902035 Pseudomonas putida GB-1 5873096 YP_001671499.1 CDS PputGB1_5282 NC_010322.1 5902132 5902584 R PFAM: protein of unknown function DUF188; KEGG: pen:PSEEN5341 hypothetical protein; hypothetical protein complement(5902132..5902584) Pseudomonas putida GB-1 5873097 YP_001671500.1 CDS cyaA NC_010322.1 5902751 5905606 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 5902751..5905606 Pseudomonas putida GB-1 5873098 YP_001671501.1 CDS PputGB1_5284 NC_010322.1 5905720 5906130 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator complement(5905720..5906130) Pseudomonas putida GB-1 5873099 YP_001671502.1 CDS PputGB1_5285 NC_010322.1 5906277 5906501 R PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN5362 hypothetical protein; hypothetical protein complement(5906277..5906501) Pseudomonas putida GB-1 5873100 YP_001671503.1 CDS cyaY NC_010322.1 5906503 5906835 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(5906503..5906835) Pseudomonas putida GB-1 5873101 YP_001671504.1 CDS PputGB1_5287 NC_010322.1 5907026 5907238 D KEGG: pen:PSEEN5364 lipoprotein Lppl; lipoprotein Lppl 5907026..5907238 Pseudomonas putida GB-1 5873102 YP_001671505.1 CDS PputGB1_5288 NC_010322.1 5907248 5908495 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN5365 diaminopimelate decarboxylase; diaminopimelate decarboxylase 5907248..5908495 Pseudomonas putida GB-1 5873103 YP_001671506.1 CDS dapF NC_010322.1 5908500 5909330 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 5908500..5909330 Pseudomonas putida GB-1 5873104 YP_001671507.1 CDS PputGB1_5290 NC_010322.1 5909344 5910054 D PFAM: protein of unknown function DUF484; KEGG: pen:PSEEN5367 hypothetical protein; hypothetical protein 5909344..5910054 Pseudomonas putida GB-1 5873105 YP_001671508.1 CDS xerC NC_010322.1 5910054 5910953 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 5910054..5910953 Pseudomonas putida GB-1 5873106 YP_001671509.1 CDS PputGB1_5292 NC_010322.1 5910950 5911645 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5369 haloacid dehalogenase-like hydrolase; HAD family hydrolase 5910950..5911645 Pseudomonas putida GB-1 5873107 YP_001671510.1 CDS PputGB1_5293 NC_010322.1 5911730 5912059 R KEGG: pen:PSEEN5374 hypothetical protein; hypothetical protein complement(5911730..5912059) Pseudomonas putida GB-1 5873108 YP_001671511.1 CDS PputGB1_5294 NC_010322.1 5912489 5913820 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN5375 ammonium transporter; ammonium transporter complement(5912489..5913820) Pseudomonas putida GB-1 5873109 YP_001671512.1 CDS PputGB1_5295 NC_010322.1 5913867 5914205 R PFAM: nitrogen regulatory protein P-II; KEGG: pen:PSEEN5376 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(5913867..5914205) Pseudomonas putida GB-1 5873110 YP_001671513.1 CDS PputGB1_5296 NC_010322.1 5914521 5914838 D PFAM: protein of unknown function DUF526; KEGG: pen:PSEEN5377 hypothetical protein; hypothetical protein 5914521..5914838 Pseudomonas putida GB-1 5873111 YP_001671514.1 CDS PputGB1_5297 NC_010322.1 5914839 5915192 D PFAM: AIG2 family protein; KEGG: pfl:PFL_5193 hypothetical protein; AIG2 family protein 5914839..5915192 Pseudomonas putida GB-1 5873112 YP_001671515.1 CDS PputGB1_5298 NC_010322.1 5915231 5915659 D PFAM: TOBE domain protein; KEGG: pen:PSEEN5378 molybdenum-pterin binding protein; TOBE domain-containing protein 5915231..5915659 Pseudomonas putida GB-1 5873113 YP_001671516.1 CDS PputGB1_5299 NC_010322.1 5915689 5917683 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN5383 hypothetical protein; Sel1 domain-containing protein complement(5915689..5917683) Pseudomonas putida GB-1 5873114 YP_001671517.1 CDS PputGB1_5300 NC_010322.1 5917941 5919431 D KEGG: pen:PSEEN5385 magnesium chelatase subunit D; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 5917941..5919431 Pseudomonas putida GB-1 5873115 YP_001671518.1 CDS PputGB1_5301 NC_010322.1 5919607 5921394 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pen:PSEEN5389 glutathione-regulated potassium-proton antiporter; potassium efflux system protein 5919607..5921394 Pseudomonas putida GB-1 5873116 YP_001671519.1 CDS PputGB1_5302 NC_010322.1 5921786 5922079 D KEGG: pen:PSEEN5391 hypothetical protein; hypothetical protein 5921786..5922079 Pseudomonas putida GB-1 5873117 YP_001671520.1 CDS PputGB1_5303 NC_010322.1 5922195 5922824 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase complement(5922195..5922824) Pseudomonas putida GB-1 5873118 YP_001671521.1 CDS PputGB1_5304 NC_010322.1 5922960 5923871 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5393 transcriptional regulator, LysR family; LysR family transcriptional regulator 5922960..5923871 Pseudomonas putida GB-1 5873119 YP_001671522.1 CDS PputGB1_5305 NC_010322.1 5923948 5925930 R PFAM: Amidohydrolase 3; KEGG: pen:PSEEN5394 puttaive metal-dependent hydrolase; amidohydrolase family; amidohydrolase 3 complement(5923948..5925930) Pseudomonas putida GB-1 5873120 YP_001671523.1 CDS PputGB1_5306 NC_010322.1 5926097 5926405 R KEGG: pen:PSEEN5396 hypothetical protein; hypothetical protein complement(5926097..5926405) Pseudomonas putida GB-1 5873121 YP_001671524.1 CDS PputGB1_5307 NC_010322.1 5926522 5927151 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase complement(5926522..5927151) Pseudomonas putida GB-1 5873122 YP_001671525.1 CDS PputGB1_5308 NC_010322.1 5927285 5928811 D PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: pen:PSEEN5400 small-conductance mechanosensitive channel; cyclic nucleotide-regulated small mechanosensitive ion channel 5927285..5928811 Pseudomonas putida GB-1 5873123 YP_001671526.1 CDS PputGB1_5309 NC_010322.1 5928858 5930144 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5401 oxidoreductase, FAD-binding; FAD dependent oxidoreductase complement(5928858..5930144) Pseudomonas putida GB-1 5873124 YP_001671527.1 CDS PputGB1_5310 NC_010322.1 5930332 5931822 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN5402 probable aldehyde dehydrogenase; aldehyde dehydrogenase complement(5930332..5931822) Pseudomonas putida GB-1 5873125 YP_001671528.1 CDS PputGB1_5311 NC_010322.1 5931959 5932849 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5404 transcriptional regulator, LysR family; LysR family transcriptional regulator 5931959..5932849 Pseudomonas putida GB-1 5873126 YP_001671529.1 CDS PputGB1_5312 NC_010322.1 5932990 5934384 D PFAM: protein of unknown function DUF1338; KEGG: pen:PSEEN5405 hypothetical protein; hypothetical protein 5932990..5934384 Pseudomonas putida GB-1 5873127 YP_001671530.1 CDS PputGB1_5313 NC_010322.1 5934436 5935362 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5407 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5934436..5935362) Pseudomonas putida GB-1 5873128 YP_001671531.1 CDS PputGB1_5314 NC_010322.1 5935520 5936908 D functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 5935520..5936908 Pseudomonas putida GB-1 5873129 YP_001671532.1 CDS PputGB1_5315 NC_010322.1 5936980 5938644 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN5409 diguanylate cyclase (GGDEF domain); diguanylate cyclase/phosphodiesterase complement(5936980..5938644) Pseudomonas putida GB-1 5873130 YP_001671533.1 CDS PputGB1_5316 NC_010322.1 5938938 5940947 D TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN5410 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep 5938938..5940947 Pseudomonas putida GB-1 5873131 YP_001671534.1 CDS PputGB1_5317 NC_010322.1 5941012 5941584 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 5941012..5941584 Pseudomonas putida GB-1 5873132 YP_001671535.1 CDS PputGB1_5318 NC_010322.1 5941707 5943563 R KEGG: pen:PSEEN5412 hypothetical protein; hypothetical protein complement(5941707..5943563) Pseudomonas putida GB-1 5873133 YP_001671536.1 CDS PputGB1_5319 NC_010322.1 5943729 5944151 R KEGG: pen:PSEEN5413 cytochrome c5; cytochrome c5 complement(5943729..5944151) Pseudomonas putida GB-1 5873134 YP_001671537.1 CDS PputGB1_5320 NC_010322.1 5944288 5944836 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN5414 transcriptional regulator; XRE family transcriptional regulator complement(5944288..5944836) Pseudomonas putida GB-1 5873135 YP_001671538.1 CDS dadX NC_010322.1 5944946 5946019 R catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase complement(5944946..5946019) Pseudomonas putida GB-1 5873136 YP_001671539.1 CDS PputGB1_5322 NC_010322.1 5946166 5947470 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(5946166..5947470) Pseudomonas putida GB-1 5873137 YP_001671540.1 CDS PputGB1_5323 NC_010322.1 5947627 5948115 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5417 leucine-responsive regulatory protein; AsnC family transcriptional regulator 5947627..5948115 Pseudomonas putida GB-1 5873138 YP_001671541.1 CDS PputGB1_5324 NC_010322.1 5948118 5948471 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5418 hypothetical protein; hypothetical protein complement(5948118..5948471) Pseudomonas putida GB-1 5873139 YP_001671542.1 CDS PputGB1_5325 NC_010322.1 5948619 5949911 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5419 oxidoreductase; D-amino acid dehydrogenase; FAD dependent oxidoreductase 5948619..5949911 Pseudomonas putida GB-1 5873140 YP_001671543.1 CDS PputGB1_5326 NC_010322.1 5950068 5950298 R KEGG: pen:PSEEN5420 hypothetical protein; hypothetical protein complement(5950068..5950298) Pseudomonas putida GB-1 5873141 YP_001671544.1 CDS PputGB1_5327 NC_010322.1 5950417 5951907 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5421 transcriptional regulator, GntR family; transcriptional regulator 5950417..5951907 Pseudomonas putida GB-1 5873142 YP_001671545.1 CDS PputGB1_5328 NC_010322.1 5951968 5953521 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN5422 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 5951968..5953521 Pseudomonas putida GB-1 5873143 YP_001671546.1 CDS PputGB1_5329 NC_010322.1 5953561 5954700 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5423 major facilitator family transporter; major facilitator superfamily transporter complement(5953561..5954700) Pseudomonas putida GB-1 5873144 YP_001671547.1 CDS PputGB1_5330 NC_010322.1 5954805 5956298 R PFAM: Aldehyde Dehydrogenase; KEGG: pen:PSEEN5424 aldehyde dehydrogenase; aldehyde dehydrogenase complement(5954805..5956298) Pseudomonas putida GB-1 5873145 YP_001671548.1 CDS PputGB1_5331 NC_010322.1 5956495 5956854 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN5425 hypothetical protein; hypothetical protein 5956495..5956854 Pseudomonas putida GB-1 5873146 YP_001671549.1 CDS rpmG NC_010322.1 5956925 5957080 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(5956925..5957080) Pseudomonas putida GB-1 5873147 YP_001671550.1 CDS rpmB NC_010322.1 5957092 5957328 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(5957092..5957328) Pseudomonas putida GB-1 5873148 YP_001671551.1 CDS PputGB1_5334 NC_010322.1 5957690 5959297 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN5430 periplasmic binding protein; extracellular solute-binding protein 5957690..5959297 Pseudomonas putida GB-1 5873149 YP_001671552.1 CDS radC NC_010322.1 5959359 5960039 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(5959359..5960039) Pseudomonas putida GB-1 5873150 YP_001671553.1 CDS PputGB1_5336 NC_010322.1 5960168 5961379 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 5960168..5961379 Pseudomonas putida GB-1 5873151 YP_001671554.1 CDS dut NC_010322.1 5961385 5961840 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 5961385..5961840 Pseudomonas putida GB-1 5873152 YP_001671555.1 CDS PputGB1_5338 NC_010322.1 5961952 5963352 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pen:PSEEN5434 phosphomannomutase; phosphomannomutase 5961952..5963352 Pseudomonas putida GB-1 5873153 YP_001671556.1 CDS PputGB1_5339 NC_010322.1 5963383 5964288 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 5963383..5964288 Pseudomonas putida GB-1 5873154 YP_001671557.1 CDS pyrE NC_010322.1 5964368 5965009 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(5964368..5965009) Pseudomonas putida GB-1 5873155 YP_001671558.1 CDS PputGB1_5341 NC_010322.1 5965090 5965869 D TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN5437 catabolite repression control protein Crc; exodeoxyribonuclease III Xth 5965090..5965869 Pseudomonas putida GB-1 5873156 YP_001671559.1 CDS rph NC_010322.1 5965931 5966653 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(5965931..5966653) Pseudomonas putida GB-1 5873157 YP_001671560.1 CDS PputGB1_5343 NC_010322.1 5966882 5967745 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pen:PSEEN5440 hypothetical protein; hypothetical protein 5966882..5967745 Pseudomonas putida GB-1 5873158 YP_001671561.1 CDS gmk NC_010322.1 5967759 5968379 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 5967759..5968379 Pseudomonas putida GB-1 5873159 YP_001671562.1 CDS PputGB1_5345 NC_010322.1 5968495 5970036 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5442 amino acid transporter; amino acid permease-associated protein complement(5968495..5970036) Pseudomonas putida GB-1 5873160 YP_001671563.1 CDS PputGB1_5346 NC_010322.1 5970156 5970923 R PFAM: peptidase C26; KEGG: pen:PSEEN5443 glutamine amidotransferase; peptidase C26 complement(5970156..5970923) Pseudomonas putida GB-1 5873161 YP_001671564.1 CDS PputGB1_5347 NC_010322.1 5970928 5972310 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5444 glutamine synthetase; glutamate--putrescine ligase complement(5970928..5972310) Pseudomonas putida GB-1 5873162 YP_001671565.1 CDS PputGB1_5348 NC_010322.1 5972516 5973388 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5445 transcriptional regulator, LysR family; LysR family transcriptional regulator 5972516..5973388 Pseudomonas putida GB-1 5873163 YP_001671566.1 CDS rpoZ NC_010322.1 5973629 5973892 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 5973629..5973892 Pseudomonas putida GB-1 5873164 YP_001671567.1 CDS PputGB1_5350 NC_010322.1 5973952 5976060 D KEGG: pen:PSEEN5447 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 5973952..5976060 Pseudomonas putida GB-1 5873165 YP_001671568.1 CDS PputGB1_5351 NC_010322.1 5976084 5976464 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pfo:Pfl_5552 YjgF-like protein; endoribonuclease L-PSP 5976084..5976464 Pseudomonas putida GB-1 5873166 YP_001671569.1 CDS PputGB1_5352 NC_010322.1 5976461 5977255 D KEGG: pen:PSEEN5449 lipoprotein; lipoprotein 5976461..5977255 Pseudomonas putida GB-1 5873167 YP_001671570.1 CDS PputGB1_5353 NC_010322.1 5977397 5978266 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: pen:PSEEN5450 hypothetical protein; NAD-dependent epimerase/dehydratase complement(5977397..5978266) Pseudomonas putida GB-1 5873168 YP_001671571.1 CDS PputGB1_5354 NC_010322.1 5978457 5979437 D TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB; tonB-system energizer ExbB 5978457..5979437 Pseudomonas putida GB-1 5873169 YP_001671572.1 CDS PputGB1_5355 NC_010322.1 5979441 5979869 D membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 5979441..5979869 Pseudomonas putida GB-1 5873170 YP_001671573.1 CDS PputGB1_5356 NC_010322.1 5979866 5980597 D TIGRFAM: TonB family protein; KEGG: pen:PSEEN5453 ferric siderophore transport system, periplasmic binding protein TonB; TonB family protein 5979866..5980597 Pseudomonas putida GB-1 5873171 YP_001671574.1 CDS PputGB1_5357 NC_010322.1 5980692 5981618 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5454 transcriptional regulator, LysR family; LysR family transcriptional regulator 5980692..5981618 Pseudomonas putida GB-1 5873172 YP_001671575.1 CDS PputGB1_5358 NC_010322.1 5981622 5983700 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 5981622..5983700 Pseudomonas putida GB-1 5873173 YP_001671576.1 CDS PputGB1_5359 NC_010322.1 5983779 5985182 D PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN5456 hypothetical protein; putative signal transduction protein 5983779..5985182 Pseudomonas putida GB-1 5873174 YP_001671577.1 CDS PputGB1_5360 NC_010322.1 5985216 5985590 R KEGG: pen:PSEEN5457 hypothetical protein; hypothetical protein complement(5985216..5985590) Pseudomonas putida GB-1 5873175 YP_001671578.1 CDS PputGB1_5361 NC_010322.1 5985738 5986043 R PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN5458 DNA-binding protein HU-alpha; histone family protein DNA-binding protein complement(5985738..5986043) Pseudomonas putida GB-1 5873176 YP_001671579.1 CDS PputGB1_5362 NC_010322.1 5986231 5987379 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5459 rubredoxin-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(5986231..5987379) Pseudomonas putida GB-1 5873177 YP_001671580.1 CDS PputGB1_5363 NC_010322.1 5987396 5987563 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pen:PSEEN5460 rubredoxin; rubredoxin-type Fe(Cys)4 protein complement(5987396..5987563) Pseudomonas putida GB-1 5873178 YP_001671581.1 CDS PputGB1_5364 NC_010322.1 5987737 5988294 D PFAM: Chorismate lyase; KEGG: pen:PSEEN5461 chorismate-pyruvate lyase; chorismate lyase 5987737..5988294 Pseudomonas putida GB-1 5873179 YP_001671582.1 CDS ubiA NC_010322.1 5988294 5989184 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 5988294..5989184 Pseudomonas putida GB-1 5873180 YP_001671583.1 CDS PputGB1_5366 NC_010322.1 5989218 5989562 R PFAM: Secreted repeat of unknown function; KEGG: pen:PSEEN5463 hypothetical protein; hypothetical protein complement(5989218..5989562) Pseudomonas putida GB-1 5873181 YP_001671584.1 CDS PputGB1_5367 NC_010322.1 5989759 5990448 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN5464 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 5989759..5990448 Pseudomonas putida GB-1 5873182 YP_001671585.1 CDS PputGB1_5368 NC_010322.1 5990497 5991804 D TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: pen:PSEEN5465 phosphate regulon sensor protein PhoR; PAS/PAC sensor signal transduction histidine kinase 5990497..5991804 Pseudomonas putida GB-1 5873183 YP_001671586.1 CDS PputGB1_5369 NC_010322.1 5992030 5993370 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN5466 metal ion transporter; hypothetical protein 5992030..5993370 Pseudomonas putida GB-1 5873184 YP_001671587.1 CDS PputGB1_5370 NC_010322.1 5993404 5994300 R PFAM: peptidase M23B; KEGG: pen:PSEEN5467 peptidase, M23/M37 family; peptidase M23B complement(5993404..5994300) Pseudomonas putida GB-1 5873185 YP_001671588.1 CDS PputGB1_5371 NC_010322.1 5994415 5995305 R PFAM: response regulator receiver; KEGG: pen:PSEEN5468 response regulator; response regulator receiver protein complement(5994415..5995305) Pseudomonas putida GB-1 5873186 YP_001671589.1 CDS PputGB1_5372 NC_010322.1 5995459 5996229 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pen:PSEEN5469 transcriptional repressor for high affinity phosphate uptake; phosphate uptake regulator PhoU complement(5995459..5996229) Pseudomonas putida GB-1 5873187 YP_001671590.1 CDS PputGB1_5373 NC_010322.1 5996293 5997126 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(5996293..5997126) Pseudomonas putida GB-1 5873188 YP_001671591.1 CDS PputGB1_5374 NC_010322.1 5997199 5998869 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5471 phosphate ABC transporter, permease protein; phosphate ABC transporter permease complement(5997199..5998869) Pseudomonas putida GB-1 5873189 YP_001671592.1 CDS PputGB1_5375 NC_010322.1 5998887 6001175 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5472 phosphate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5998887..6001175) Pseudomonas putida GB-1 5873190 YP_001671593.1 CDS PputGB1_5376 NC_010322.1 6001314 6002312 R TIGRFAM: phosphate binding protein; KEGG: pen:PSEEN5473 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate binding protein complement(6001314..6002312) Pseudomonas putida GB-1 5873191 YP_001671594.1 CDS PputGB1_5377 NC_010322.1 6002472 6003989 R PFAM: S-type Pyocin domain protein; KEGG: pfo:Pfl_5397 S-type pyocin; S-type pyocin domain-containing protein complement(6002472..6003989) Pseudomonas putida GB-1 5873192 YP_001671595.1 CDS PputGB1_5378 NC_010322.1 6004456 6007044 R PFAM: S-type Pyocin domain protein; KEGG: psb:Psyr_0310 HNH endonuclease:S-type Pyocin; S-type pyocin domain-containing protein complement(6004456..6007044) Pseudomonas putida GB-1 5873193 YP_001671596.1 CDS PputGB1_5379 NC_010322.1 6007172 6008461 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN5474 permease (MFS superfamily); major facilitator superfamily transporter complement(6007172..6008461) Pseudomonas putida GB-1 5873194 YP_001671597.1 CDS PputGB1_5380 NC_010322.1 6008822 6009220 D PFAM: thioesterase superfamily protein; KEGG: pfo:Pfl_5617 thioesterase superfamily; thioesterase superfamily protein 6008822..6009220 Pseudomonas putida GB-1 5873195 YP_001671598.1 CDS PputGB1_5381 NC_010322.1 6009283 6010188 D PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN5476 aldose 1-epimerase; aldose 1-epimerase 6009283..6010188 Pseudomonas putida GB-1 5873196 YP_001671599.1 CDS PputGB1_5382 NC_010322.1 6010251 6010784 R KEGG: pen:PSEEN5477 hypothetical protein; hypothetical protein complement(6010251..6010784) Pseudomonas putida GB-1 5873197 YP_001671600.1 CDS PputGB1_5383 NC_010322.1 6010833 6011078 R PFAM: Transglycosylase-associated protein; KEGG: pen:PSEEN5478 hypothetical protein; transglycosylase-associated protein complement(6010833..6011078) Pseudomonas putida GB-1 5873198 YP_001671601.1 CDS PputGB1_5384 NC_010322.1 6011187 6012269 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(6011187..6012269) Pseudomonas putida GB-1 5873199 YP_001671602.1 CDS PputGB1_5385 NC_010322.1 6012280 6012771 R KEGG: pen:PSEEN5480 phosphoribosylaminoimidazole carboxylase, mutase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(6012280..6012771) Pseudomonas putida GB-1 5873200 YP_001671603.1 CDS PputGB1_5386 NC_010322.1 6012943 6013875 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5481 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(6012943..6013875) Pseudomonas putida GB-1 5873201 YP_001671604.1 CDS aspA NC_010322.1 6014025 6015482 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 6014025..6015482 Pseudomonas putida GB-1 5873202 YP_001671605.1 CDS PputGB1_5388 NC_010322.1 6015662 6016654 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN5487 transcriptional regulator, AraC family; AraC family transcriptional regulator 6015662..6016654 Pseudomonas putida GB-1 5873203 YP_001671606.1 CDS PputGB1_5389 NC_010322.1 6016771 6017814 D PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN5488 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein 6016771..6017814 Pseudomonas putida GB-1 5873204 YP_001671607.1 CDS PputGB1_5390 NC_010322.1 6017814 6018917 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5489 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 6017814..6018917 Pseudomonas putida GB-1 5873205 YP_001671608.1 CDS PputGB1_5391 NC_010322.1 6018950 6020479 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5491 transcriptional regulator, GntR family; transcriptional regulator complement(6018950..6020479) Pseudomonas putida GB-1 5873206 YP_001671609.1 CDS PputGB1_5392 NC_010322.1 6020570 6021199 D PFAM: Negative transcriptional regulator; KEGG: pen:PSEEN5492 transcriptional regulator; FMN-binding negative transcriptional regulator 6020570..6021199 Pseudomonas putida GB-1 5873207 YP_001671610.1 CDS PputGB1_5393 NC_010322.1 6021212 6021658 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5493 acetyltransferase, GNAT family; N-acetyltransferase GCN5 6021212..6021658 Pseudomonas putida GB-1 5873208 YP_001671611.1 CDS PputGB1_5394 NC_010322.1 6021666 6022337 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5494 acetyltransferase, GNAT family; N-acetyltransferase GCN5 6021666..6022337 Pseudomonas putida GB-1 5873209 YP_001671612.1 CDS PputGB1_5395 NC_010322.1 6022440 6024248 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(6022440..6024248) Pseudomonas putida GB-1 5873210 YP_001671613.1 CDS PputGB1_5396 NC_010322.1 6024260 6025675 R biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A complement(6024260..6025675) Pseudomonas putida GB-1 5873211 YP_001671614.1 CDS PputGB1_5397 NC_010322.1 6025866 6026828 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5497 transcriptional regulator, LysR family; LysR family transcriptional regulator 6025866..6026828 Pseudomonas putida GB-1 5873212 YP_001671615.1 CDS PputGB1_5398 NC_010322.1 6026770 6026988 R KEGG: pen:PSEEN5498 hypothetical protein; hypothetical protein complement(6026770..6026988) Pseudomonas putida GB-1 5873213 YP_001671616.1 CDS PputGB1_5399 NC_010322.1 6027139 6028005 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN5499 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(6027139..6028005) Pseudomonas putida GB-1 5873214 YP_001671617.1 CDS PputGB1_5400 NC_010322.1 6028109 6029551 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 6028109..6029551 Pseudomonas putida GB-1 5873215 YP_001671618.1 CDS uvrD NC_010322.1 6029764 6031950 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 6029764..6031950 Pseudomonas putida GB-1 5873216 YP_001671619.1 CDS PputGB1_5402 NC_010322.1 6032085 6032939 D PFAM: import inner membrane translocase subunit Tim44; KEGG: pen:PSEEN5505 hypothetical protein; import inner membrane translocase subunit Tim44 6032085..6032939 Pseudomonas putida GB-1 5873217 YP_001671620.1 CDS PputGB1_5403 NC_010322.1 6033054 6033461 D KEGG: psb:Psyr_5067 hypothetical protein; hypothetical protein 6033054..6033461 Pseudomonas putida GB-1 5873218 YP_001671621.1 CDS PputGB1_5404 NC_010322.1 6033595 6035355 R PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5507 sodium/proton antiporter; sodium/hydrogen exchanger complement(6033595..6035355) Pseudomonas putida GB-1 5873219 YP_001671622.1 CDS PputGB1_5405 NC_010322.1 6035698 6036183 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5508 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 6035698..6036183 Pseudomonas putida GB-1 5873220 YP_001671623.1 CDS PputGB1_5406 NC_010322.1 6036180 6037052 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(6036180..6037052) Pseudomonas putida GB-1 5873221 YP_001671624.1 CDS PputGB1_5407 NC_010322.1 6037173 6037565 D KEGG: pen:PSEEN5510 hypothetical protein; hypothetical protein 6037173..6037565 Pseudomonas putida GB-1 5873222 YP_001671625.1 CDS PputGB1_5408 NC_010322.1 6037566 6038537 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5511 cobalamin synthesis protein, P47K family; cobalamin synthesis protein P47K complement(6037566..6038537) Pseudomonas putida GB-1 5873223 YP_001671626.1 CDS PputGB1_5409 NC_010322.1 6038578 6039204 R PFAM: Protein of unknown function DUF1826; KEGG: pen:PSEEN5512 hypothetical protein; hypothetical protein complement(6038578..6039204) Pseudomonas putida GB-1 5873224 YP_001671627.1 CDS PputGB1_5410 NC_010322.1 6039201 6040406 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5513 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K complement(6039201..6040406) Pseudomonas putida GB-1 5873225 YP_001671628.1 CDS PputGB1_5411 NC_010322.1 6040521 6040901 D KEGG: pen:PSEEN5514 hypothetical protein; hypothetical protein 6040521..6040901 Pseudomonas putida GB-1 5873226 YP_001671629.1 CDS PputGB1_5412 NC_010322.1 6040927 6041832 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 6040927..6041832 Pseudomonas putida GB-1 5873227 YP_001671630.1 CDS PputGB1_5413 NC_010322.1 6041816 6042343 R KEGG: pen:PSEEN5516 hypothetical protein; hypothetical protein complement(6041816..6042343) Pseudomonas putida GB-1 5873228 YP_001671631.1 CDS cls NC_010322.1 6042477 6043916 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 6042477..6043916 Pseudomonas putida GB-1 5873229 YP_001671632.1 CDS PputGB1_5415 NC_010322.1 6043981 6045165 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5518 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(6043981..6045165) Pseudomonas putida GB-1 5873230 YP_001671633.1 CDS PputGB1_5416 NC_010322.1 6045373 6046773 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 6045373..6046773 Pseudomonas putida GB-1 5873231 YP_001671634.1 CDS PputGB1_5417 NC_010322.1 6047157 6048380 R PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA0811 probable major facilitator superfamily (MFS) transporter; major facilitator superfamily transporter complement(6047157..6048380) Pseudomonas putida GB-1 5873232 YP_001671635.1 CDS PputGB1_5418 NC_010322.1 6048507 6049397 R PFAM: Asp/Glu/hydantoin racemase; KEGG: bci:BCI_0153 glutamate racemase; glutamate racemase complement(6048507..6049397) Pseudomonas putida GB-1 5873233 YP_001671636.1 CDS PputGB1_5419 NC_010322.1 6049409 6050383 R KEGG: rxy:Rxyl_1155 hypothetical protein; hypothetical protein complement(6049409..6050383) Pseudomonas putida GB-1 5873234 YP_001671637.1 CDS PputGB1_5420 NC_010322.1 6051479 6051823 R KEGG: dar:Daro_1371 hypothetical protein; hypothetical protein complement(6051479..6051823) Pseudomonas putida GB-1 5873235 YP_001671638.1 CDS PputGB1_5421 NC_010322.1 6051831 6052526 R KEGG: dar:Daro_1373 hypothetical protein; hypothetical protein complement(6051831..6052526) Pseudomonas putida GB-1 5873236 YP_001671639.1 CDS PputGB1_5422 NC_010322.1 6054036 6055475 D hypothetical protein 6054036..6055475 Pseudomonas putida GB-1 5873237 YP_001671640.1 CDS PputGB1_5423 NC_010322.1 6055482 6056171 D PFAM: peptidase M23B; KEGG: rso:RSc0249 putative calcium binding hemolysin protein; peptidase M23B 6055482..6056171 Pseudomonas putida GB-1 5873238 YP_001671641.1 CDS PputGB1_5424 NC_010322.1 6056930 6057208 D PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 6056930..6057208 Pseudomonas putida GB-1 5873239 YP_001671642.1 CDS PputGB1_5425 NC_010322.1 6057247 6058080 D PFAM: Integrase catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 6057247..6058080 Pseudomonas putida GB-1 5873240 YP_001671643.1 CDS PputGB1_5426 NC_010322.1 6058096 6058482 R hypothetical protein complement(6058096..6058482) Pseudomonas putida GB-1 5873241 YP_001671644.1 CDS PputGB1_5427 NC_010322.1 6058632 6060467 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(6058632..6060467) Pseudomonas putida GB-1 5873242 YP_001671645.1 CDS PputGB1_5428 NC_010322.1 6060471 6061247 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN5538 transcriptional repressor, DeoR family; DeoR family transcriptional regulator complement(6060471..6061247) Pseudomonas putida GB-1 5873243 YP_001671646.1 CDS PputGB1_5429 NC_010322.1 6061553 6062920 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pen:PSEEN5540 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(6061553..6062920) Pseudomonas putida GB-1 5873244 YP_001671647.1 CDS atpC NC_010322.1 6063041 6063460 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(6063041..6063460) Pseudomonas putida GB-1 5873245 YP_001671648.1 CDS PputGB1_5431 NC_010322.1 6063504 6064880 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(6063504..6064880) Pseudomonas putida GB-1 5873246 YP_001671649.1 CDS PputGB1_5432 NC_010322.1 6064908 6065768 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(6064908..6065768) Pseudomonas putida GB-1 5873247 YP_001671650.1 CDS PputGB1_5433 NC_010322.1 6065817 6067361 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(6065817..6067361) Pseudomonas putida GB-1 5873248 YP_001671651.1 CDS PputGB1_5434 NC_010322.1 6067383 6067919 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(6067383..6067919) Pseudomonas putida GB-1 5873249 YP_001671652.1 CDS PputGB1_5435 NC_010322.1 6067932 6068402 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(6067932..6068402) Pseudomonas putida GB-1 5873250 YP_001671653.1 CDS PputGB1_5436 NC_010322.1 6068459 6068716 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(6068459..6068716) Pseudomonas putida GB-1 5873251 YP_001671654.1 CDS PputGB1_5437 NC_010322.1 6068861 6069730 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(6068861..6069730) Pseudomonas putida GB-1 5873252 YP_001671655.1 CDS PputGB1_5438 NC_010322.1 6069747 6070154 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(6069747..6070154) Pseudomonas putida GB-1 5873253 YP_001671656.1 CDS PputGB1_5439 NC_010322.1 6070304 6071176 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pen:PSEEN5551 chromosomal partitioning protein ParB; parB-like partition protein complement(6070304..6071176) Pseudomonas putida GB-1 5873254 YP_001671657.1 CDS PputGB1_5440 NC_010322.1 6071186 6071977 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN5552 chromosome partitioning ATPase ParA; cobyrinic acid ac-diamide synthase complement(6071186..6071977) Pseudomonas putida GB-1 5873255 YP_001671658.1 CDS gidB NC_010322.1 6071996 6072646 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(6071996..6072646) Pseudomonas putida GB-1 5873256 YP_001671659.1 CDS PputGB1_5442 NC_010322.1 6072643 6074535 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(6072643..6074535) Pseudomonas putida GB-1 5873257 YP_001671660.1 CDS trmE NC_010322.1 6075052 6076422 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(6075052..6076422) Pseudomonas putida GB-1 5873258 YP_001671661.1 CDS PputGB1_5444 NC_010322.1 6076511 6078193 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(6076511..6078193) Pseudomonas putida GB-1 5873259 PputGB1_R0005 tRNA PputGB1_R0005 NC_010322.1 190651 190727 D tRNA-Ile 190651..190727 Pseudomonas putida GB-1 5867870 PputGB1_R0006 tRNA PputGB1_R0006 NC_010322.1 190752 190827 D tRNA-Ala 190752..190827 Pseudomonas putida GB-1 5867871 PputGB1_R0010 tRNA PputGB1_R0010 NC_010322.1 265377 265453 R tRNA-Arg complement(265377..265453) Pseudomonas putida GB-1 5867926 PputGB1_R0011 tRNA PputGB1_R0011 NC_010322.1 351243 351318 R tRNA-Thr complement(351243..351318) Pseudomonas putida GB-1 5867997 PputGB1_R0012 tRNA PputGB1_R0012 NC_010322.1 360082 360157 R tRNA-Phe complement(360082..360157) Pseudomonas putida GB-1 5868049 PputGB1_R0013 tRNA PputGB1_R0013 NC_010322.1 485105 485181 R tRNA-Met complement(485105..485181) Pseudomonas putida GB-1 5868155 PputGB1_R0017 tRNA PputGB1_R0017 NC_010322.1 550093 550176 D tRNA-Tyr 550093..550176 Pseudomonas putida GB-1 5868212 PputGB1_R0018 tRNA PputGB1_R0018 NC_010322.1 550201 550274 D tRNA-Gly 550201..550274 Pseudomonas putida GB-1 5868213 PputGB1_R0019 tRNA PputGB1_R0019 NC_010322.1 550304 550379 D tRNA-Thr 550304..550379 Pseudomonas putida GB-1 5868214 PputGB1_R0020 tRNA PputGB1_R0020 NC_010322.1 551706 551781 D tRNA-Trp 551706..551781 Pseudomonas putida GB-1 5868216 PputGB1_R0022 tRNA PputGB1_R0022 NC_010322.1 733146 733222 D tRNA-Ile 733146..733222 Pseudomonas putida GB-1 5868390 PputGB1_R0023 tRNA PputGB1_R0023 NC_010322.1 733247 733322 D tRNA-Ala 733247..733322 Pseudomonas putida GB-1 5868391 PputGB1_R0026 tRNA PputGB1_R0026 NC_010322.1 766609 766684 D tRNA-Asn 766609..766684 Pseudomonas putida GB-1 5868423 PputGB1_R0027 tRNA PputGB1_R0027 NC_010322.1 766689 766765 D tRNA-Pro 766689..766765 Pseudomonas putida GB-1 5868424 PputGB1_R0028 tRNA PputGB1_R0028 NC_010322.1 766772 766847 D tRNA-Lys 766772..766847 Pseudomonas putida GB-1 5868425 PputGB1_R0029 tRNA PputGB1_R0029 NC_010322.1 766894 766970 D tRNA-Pro 766894..766970 Pseudomonas putida GB-1 5868426 PputGB1_R0030 tRNA PputGB1_R0030 NC_010322.1 766976 767051 D tRNA-Lys 766976..767051 Pseudomonas putida GB-1 5868427 PputGB1_R0031 tRNA PputGB1_R0031 NC_010322.1 774066 774141 D tRNA-Thr 774066..774141 Pseudomonas putida GB-1 5868437 PputGB1_R0032 tRNA PputGB1_R0032 NC_010322.1 834666 834742 R tRNA-Met complement(834666..834742) Pseudomonas putida GB-1 5868491 PputGB1_R0033 tRNA PputGB1_R0033 NC_010322.1 876002 876076 R tRNA-Gln complement(876002..876076) Pseudomonas putida GB-1 5868525 PputGB1_R0034 tRNA PputGB1_R0034 NC_010322.1 1007715 1007799 R tRNA-Leu complement(1007715..1007799) Pseudomonas putida GB-1 5868634 PputGB1_R0036 tRNA PputGB1_R0036 NC_010322.1 1451405 1451480 D tRNA-Val 1451405..1451480 Pseudomonas putida GB-1 5869061 PputGB1_R0037 tRNA PputGB1_R0037 NC_010322.1 1451494 1451570 D tRNA-Asp 1451494..1451570 Pseudomonas putida GB-1 5869062 PputGB1_R0038 tRNA PputGB1_R0038 NC_010322.1 1451741 1451816 D tRNA-Val 1451741..1451816 Pseudomonas putida GB-1 5869063 PputGB1_R0039 tRNA PputGB1_R0039 NC_010322.1 1451830 1451906 D tRNA-Asp 1451830..1451906 Pseudomonas putida GB-1 5869064 PputGB1_R0040 tRNA PputGB1_R0040 NC_010322.1 1593221 1593310 D tRNA-Ser 1593221..1593310 Pseudomonas putida GB-1 5869188 PputGB1_R0041 tRNA PputGB1_R0041 NC_010322.1 1622931 1623006 D tRNA-Glu 1622931..1623006 Pseudomonas putida GB-1 5869219 PputGB1_R0042 tRNA PputGB1_R0042 NC_010322.1 1623009 1623084 D tRNA-Gly 1623009..1623084 Pseudomonas putida GB-1 5869220 PputGB1_R0043 tRNA PputGB1_R0043 NC_010322.1 1623176 1623251 D tRNA-Glu 1623176..1623251 Pseudomonas putida GB-1 5869221 PputGB1_R0044 tRNA PputGB1_R0044 NC_010322.1 1623255 1623330 D tRNA-Gly 1623255..1623330 Pseudomonas putida GB-1 5869222 PputGB1_R0045 tRNA PputGB1_R0045 NC_010322.1 1623415 1623490 D tRNA-Gly 1623415..1623490 Pseudomonas putida GB-1 5869223 PputGB1_R0046 tRNA PputGB1_R0046 NC_010322.1 1685683 1685758 R tRNA-Asn complement(1685683..1685758) Pseudomonas putida GB-1 5869273 PputGB1_R0047 tRNA PputGB1_R0047 NC_010322.1 1693894 1693969 D tRNA-Ala 1693894..1693969 Pseudomonas putida GB-1 5869279 PputGB1_R0048 tRNA PputGB1_R0048 NC_010322.1 1694042 1694117 D tRNA-Glu 1694042..1694117 Pseudomonas putida GB-1 5869280 PputGB1_R0049 tRNA PputGB1_R0049 NC_010322.1 1694171 1694246 D tRNA-Ala 1694171..1694246 Pseudomonas putida GB-1 5869281 PputGB1_R0050 tRNA PputGB1_R0050 NC_010322.1 1694289 1694364 D tRNA-Glu 1694289..1694364 Pseudomonas putida GB-1 5869282 PputGB1_R0051 tRNA PputGB1_R0051 NC_010322.1 1694427 1694502 D tRNA-Ala 1694427..1694502 Pseudomonas putida GB-1 5869283 PputGB1_R0052 tRNA PputGB1_R0052 NC_010322.1 1694545 1694620 D tRNA-Glu 1694545..1694620 Pseudomonas putida GB-1 5869284 PputGB1_R0053 tRNA PputGB1_R0053 NC_010322.1 1728503 1728578 D tRNA-Val 1728503..1728578 Pseudomonas putida GB-1 5869313 PputGB1_R0054 tRNA PputGB1_R0054 NC_010322.1 1728644 1728720 D tRNA-Asp 1728644..1728720 Pseudomonas putida GB-1 5869314 PputGB1_R0055 tRNA PputGB1_R0055 NC_010322.1 1728820 1728896 D tRNA-Asp 1728820..1728896 Pseudomonas putida GB-1 5869315 PputGB1_R0056 tRNA PputGB1_R0056 NC_010322.1 1729038 1729114 D tRNA-Asp 1729038..1729114 Pseudomonas putida GB-1 5869316 PputGB1_R0057 tRNA PputGB1_R0057 NC_010322.1 1882603 1882679 R tRNA-Pro complement(1882603..1882679) Pseudomonas putida GB-1 5869441 PputGB1_R0059 tRNA PputGB1_R0059 NC_010322.1 2094345 2094421 D tRNA-Ile 2094345..2094421 Pseudomonas putida GB-1 5869645 PputGB1_R0060 tRNA PputGB1_R0060 NC_010322.1 2094446 2094521 D tRNA-Ala 2094446..2094521 Pseudomonas putida GB-1 5869646 PputGB1_R0063 tRNA PputGB1_R0063 NC_010322.1 2138541 2138617 D tRNA-Arg 2138541..2138617 Pseudomonas putida GB-1 5869685 PputGB1_R0064 tRNA PputGB1_R0064 NC_010322.1 2138659 2138734 D tRNA-His 2138659..2138734 Pseudomonas putida GB-1 5869686 PputGB1_R0065 tRNA PputGB1_R0065 NC_010322.1 2138787 2138871 D tRNA-Leu 2138787..2138871 Pseudomonas putida GB-1 5869687 PputGB1_R0066 tRNA PputGB1_R0066 NC_010322.1 2138916 2138991 D tRNA-His 2138916..2138991 Pseudomonas putida GB-1 5869688 PputGB1_R0067 tRNA PputGB1_R0067 NC_010322.1 2197064 2197138 D tRNA-Gln 2197064..2197138 Pseudomonas putida GB-1 5869743 PputGB1_R0068 tRNA PputGB1_R0068 NC_010322.1 3854270 3854346 R tRNA-Gly complement(3854270..3854346) Pseudomonas putida GB-1 5871212 PputGB1_R0069 tRNA PputGB1_R0069 NC_010322.1 3881208 3881284 R tRNA-Pro complement(3881208..3881284) Pseudomonas putida GB-1 5871260 PputGB1_R0070 tRNA PputGB1_R0070 NC_010322.1 3929062 3929138 R tRNA-Val complement(3929062..3929138) Pseudomonas putida GB-1 5871311 PputGB1_R0071 tRNA PputGB1_R0071 NC_010322.1 3929305 3929381 R tRNA-Val complement(3929305..3929381) Pseudomonas putida GB-1 5871312 PputGB1_R0072 tRNA PputGB1_R0072 NC_010322.1 3953067 3953151 D tRNA-Leu 3953067..3953151 Pseudomonas putida GB-1 5871341 PputGB1_R0073 tRNA PputGB1_R0073 NC_010322.1 3956371 3956444 R tRNA-Cys complement(3956371..3956444) Pseudomonas putida GB-1 5871346 PputGB1_R0074 tRNA PputGB1_R0074 NC_010322.1 3996965 3997052 R tRNA-Ser complement(3996965..3997052) Pseudomonas putida GB-1 5871387 PputGB1_R0075 tRNA PputGB1_R0075 NC_010322.1 4084634 4084709 R tRNA-Gly complement(4084634..4084709) Pseudomonas putida GB-1 5871462 PputGB1_R0077 tRNA PputGB1_R0077 NC_010322.1 4419026 4419102 R tRNA-Arg complement(4419026..4419102) Pseudomonas putida GB-1 5871768 PputGB1_R0078 tRNA PputGB1_R0078 NC_010322.1 4422426 4422502 R tRNA-Arg complement(4422426..4422502) Pseudomonas putida GB-1 5871772 PputGB1_R0079 tRNA PputGB1_R0079 NC_010322.1 4422576 4422652 R tRNA-Arg complement(4422576..4422652) Pseudomonas putida GB-1 5871773 PputGB1_R0080 tRNA PputGB1_R0080 NC_010322.1 4422726 4422802 R tRNA-Arg complement(4422726..4422802) Pseudomonas putida GB-1 5871774 PputGB1_R0081 tRNA PputGB1_R0081 NC_010322.1 4422874 4422950 R tRNA-Arg complement(4422874..4422950) Pseudomonas putida GB-1 5871775 PputGB1_R0082 tRNA PputGB1_R0082 NC_010322.1 4423057 4423147 R tRNA-Ser complement(4423057..4423147) Pseudomonas putida GB-1 5871776 PputGB1_R0083 tRNA PputGB1_R0083 NC_010322.1 4675423 4675512 R tRNA-Ser complement(4675423..4675512) Pseudomonas putida GB-1 5871977 PputGB1_R0084 tRNA PputGB1_R0084 NC_010322.1 4691238 4691313 R tRNA-Lys complement(4691238..4691313) Pseudomonas putida GB-1 5871992 PputGB1_R0085 tRNA PputGB1_R0085 NC_010322.1 4712509 4712585 D tRNA-Met 4712509..4712585 Pseudomonas putida GB-1 5872017 PputGB1_R0086 tRNA PputGB1_R0086 NC_010322.1 4712720 4712796 D tRNA-Met 4712720..4712796 Pseudomonas putida GB-1 5872018 PputGB1_R0087 tRNA PputGB1_R0087 NC_010322.1 4712930 4713006 D tRNA-Met 4712930..4713006 Pseudomonas putida GB-1 5872019 PputGB1_R0091 tRNA PputGB1_R0091 NC_010322.1 4929125 4929198 D tRNA-Gly 4929125..4929198 Pseudomonas putida GB-1 5872211 PputGB1_R0096 tRNA PputGB1_R0096 NC_010322.1 5269369 5269445 R tRNA-Met complement(5269369..5269445) Pseudomonas putida GB-1 5872526 PputGB1_R0097 tRNA PputGB1_R0097 NC_010322.1 5269546 5269631 R tRNA-Leu complement(5269546..5269631) Pseudomonas putida GB-1 5872527 PputGB1_R0099 tRNA PputGB1_R0099 NC_010322.1 5507216 5507302 D tRNA-Leu 5507216..5507302 Pseudomonas putida GB-1 5872750 PputGB1_R0100 tRNA PputGB1_R0100 NC_010322.1 5507391 5507477 D tRNA-Leu 5507391..5507477 Pseudomonas putida GB-1 5872751 PputGB1_R0001 rRNA PputGB1_R0001 NC_010322.1 183627 185155 D 16S ribosomal RNA 183627..185155 Pseudomonas putida GB-1 5867866 PputGB1_R0002 rRNA PputGB1_R0002 NC_010322.1 185435 188328 D 23S ribosomal RNA 185435..188328 Pseudomonas putida GB-1 5867867 PputGB1_R0003 rRNA PputGB1_R0003 NC_010322.1 188466 188581 D 5S ribosomal RNA 188466..188581 Pseudomonas putida GB-1 5867868 PputGB1_R0004 rRNA PputGB1_R0004 NC_010322.1 189034 190562 D 16S ribosomal RNA 189034..190562 Pseudomonas putida GB-1 5867869 PputGB1_R0007 rRNA PputGB1_R0007 NC_010322.1 191072 193965 D 23S ribosomal RNA 191072..193965 Pseudomonas putida GB-1 5867872 PputGB1_R0008 rRNA PputGB1_R0008 NC_010322.1 194103 194218 D 5S ribosomal RNA 194103..194218 Pseudomonas putida GB-1 5867873 PputGB1_R0009 rRNA PputGB1_R0009 NC_010322.1 194328 194443 D 5S ribosomal RNA 194328..194443 Pseudomonas putida GB-1 5867874 PputGB1_R0014 rRNA PputGB1_R0014 NC_010322.1 542643 544171 D 16S ribosomal RNA 542643..544171 Pseudomonas putida GB-1 5868206 PputGB1_R0015 rRNA PputGB1_R0015 NC_010322.1 544451 547344 D 23S ribosomal RNA 544451..547344 Pseudomonas putida GB-1 5868207 PputGB1_R0016 rRNA PputGB1_R0016 NC_010322.1 547482 547597 D 5S ribosomal RNA 547482..547597 Pseudomonas putida GB-1 5868208 PputGB1_R0021 rRNA PputGB1_R0021 NC_010322.1 731529 733057 D 16S ribosomal RNA 731529..733057 Pseudomonas putida GB-1 5868389 PputGB1_R0024 rRNA PputGB1_R0024 NC_010322.1 733567 736460 D 23S ribosomal RNA 733567..736460 Pseudomonas putida GB-1 5868392 PputGB1_R0025 rRNA PputGB1_R0025 NC_010322.1 736598 736713 D 5S ribosomal RNA 736598..736713 Pseudomonas putida GB-1 5868393 PputGB1_R0058 rRNA PputGB1_R0058 NC_010322.1 2092728 2094256 D 16S ribosomal RNA 2092728..2094256 Pseudomonas putida GB-1 5869644 PputGB1_R0061 rRNA PputGB1_R0061 NC_010322.1 2094766 2097659 D 23S ribosomal RNA 2094766..2097659 Pseudomonas putida GB-1 5869647 PputGB1_R0062 rRNA PputGB1_R0062 NC_010322.1 2097797 2097912 D 5S ribosomal RNA 2097797..2097912 Pseudomonas putida GB-1 5869648 PputGB1_R0088 rRNA PputGB1_R0088 NC_010322.1 4762446 4762561 R 5S ribosomal RNA complement(4762446..4762561) Pseudomonas putida GB-1 5872062 PputGB1_R0089 rRNA PputGB1_R0089 NC_010322.1 4762699 4765592 R 23S ribosomal RNA complement(4762699..4765592) Pseudomonas putida GB-1 5872063 PputGB1_R0090 rRNA PputGB1_R0090 NC_010322.1 4765872 4767400 R 16S ribosomal RNA complement(4765872..4767400) Pseudomonas putida GB-1 5872064 PputGB1_R0093 rRNA PputGB1_R0093 NC_010322.1 5216534 5216649 R 5S ribosomal RNA complement(5216534..5216649) Pseudomonas putida GB-1 5872481 PputGB1_R0094 rRNA PputGB1_R0094 NC_010322.1 5216787 5219680 R 23S ribosomal RNA complement(5216787..5219680) Pseudomonas putida GB-1 5872482 PputGB1_R0095 rRNA PputGB1_R0095 NC_010322.1 5219960 5221488 R 16S ribosomal RNA complement(5219960..5221488) Pseudomonas putida GB-1 5872483