-- dump date 20140620_013700 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001746876.1 170719188 6114217 386..1921 1 NC_010501.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1921 dnaA 6114217 dnaA Pseudomonas putida W619 chromosomal replication initiation protein YP_001746876.1 386 D 390235 CDS YP_001746877.1 170719189 6109172 1962..3065 1 NC_010501.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3065 6109172 PputW619_0002 Pseudomonas putida W619 DNA polymerase III subunit beta YP_001746877.1 1962 D 390235 CDS YP_001746878.1 170719190 6109173 3081..4184 1 NC_010501.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4184 recF 6109173 recF Pseudomonas putida W619 recombination protein F YP_001746878.1 3081 D 390235 CDS YP_001746879.1 170719191 6109174 4189..6609 1 NC_010501.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6609 gyrB 6109174 gyrB Pseudomonas putida W619 DNA gyrase subunit B YP_001746879.1 4189 D 390235 CDS YP_001746880.1 170719192 6109175 7447..8085 1 NC_010501.1 KEGG: bur:Bcep18194_C6542 hypothetical protein; hypothetical protein 8085 6109175 PputW619_0005 Pseudomonas putida W619 hypothetical protein YP_001746880.1 7447 D 390235 CDS YP_001746881.1 170719193 6109176 8066..10024 1 NC_010501.1 PFAM: Integrase catalytic region; KEGG: bur:Bcep18194_C6543 hypothetical protein; integrase catalytic region 10024 6109176 PputW619_0006 Pseudomonas putida W619 integrase catalytic region YP_001746881.1 8066 D 390235 CDS YP_001746882.1 170719194 6109177 10021..10980 1 NC_010501.1 SMART: AAA ATPase; KEGG: bur:Bcep18194_C6544 hypothetical protein; ATPase AAA 10980 6109177 PputW619_0007 Pseudomonas putida W619 ATPase AAA YP_001746882.1 10021 D 390235 CDS YP_001746883.1 170719195 6109178 11056..12972 1 NC_010501.1 KEGG: pst:PSPTO_0030 hypothetical protein; hypothetical protein 12972 6109178 PputW619_0008 Pseudomonas putida W619 hypothetical protein YP_001746883.1 11056 D 390235 CDS YP_001746884.1 170719196 6109179 13029..13388 1 NC_010501.1 KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 13388 6109179 PputW619_0009 Pseudomonas putida W619 hypothetical protein YP_001746884.1 13029 D 390235 CDS YP_001746885.1 170719197 6109180 13760..14092 1 NC_010501.1 KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein 14092 6109180 PputW619_0010 Pseudomonas putida W619 hypothetical protein YP_001746885.1 13760 D 390235 CDS YP_001746886.1 170719198 6109181 complement(14190..14645) 1 NC_010501.1 PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein 14645 6109181 PputW619_0011 Pseudomonas putida W619 hypothetical protein YP_001746886.1 14190 R 390235 CDS YP_001746887.1 170719199 6109182 complement(14635..15414) 1 NC_010501.1 KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein 15414 6109182 PputW619_0012 Pseudomonas putida W619 hypothetical protein YP_001746887.1 14635 R 390235 CDS YP_001746888.1 170719200 6109183 complement(15424..16539) 1 NC_010501.1 PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B 16539 6109183 PputW619_0013 Pseudomonas putida W619 copper resistance B YP_001746888.1 15424 R 390235 CDS YP_001746889.1 170719201 6109184 complement(16529..16870) 1 NC_010501.1 KEGG: psa:PST_3382 hypothetical protein; hypothetical protein 16870 6109184 PputW619_0014 Pseudomonas putida W619 hypothetical protein YP_001746889.1 16529 R 390235 CDS YP_001746890.1 170719202 6109185 complement(16867..18825) 1 NC_010501.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein 18825 6109185 PputW619_0015 Pseudomonas putida W619 CopA family copper resistance protein YP_001746890.1 16867 R 390235 CDS YP_001746891.1 170719203 6109186 complement(19008..19214) 1 NC_010501.1 KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein 19214 6109186 PputW619_0016 Pseudomonas putida W619 hypothetical protein YP_001746891.1 19008 R 390235 CDS YP_001746892.1 170719204 6109187 19381..20058 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psa:PST_3390 transcriptional activator CopR; two component heavy metal response transcriptional regulator 20058 6109187 PputW619_0017 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001746892.1 19381 D 390235 CDS YP_001746893.1 170719205 6109188 20058..21464 1 NC_010501.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 21464 6109188 PputW619_0018 Pseudomonas putida W619 heavy metal sensor signal transduction histidine kinase YP_001746893.1 20058 D 390235 CDS YP_001746894.1 170719206 6109189 21564..21848 1 NC_010501.1 KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 21848 6109189 PputW619_0019 Pseudomonas putida W619 hypothetical protein YP_001746894.1 21564 D 390235 CDS YP_001746895.1 170719207 6109190 21935..23188 1 NC_010501.1 PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 23188 6109190 PputW619_0020 Pseudomonas putida W619 outer membrane efflux protein YP_001746895.1 21935 D 390235 CDS YP_001746896.1 170719208 6109191 23185..24651 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 24651 6109191 PputW619_0021 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001746896.1 23185 D 390235 CDS YP_001746897.1 170719209 6109192 24648..27806 1 NC_010501.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 27806 6109192 PputW619_0022 Pseudomonas putida W619 CzcA family heavy metal efflux protein YP_001746897.1 24648 D 390235 CDS YP_001746898.1 170719210 6109193 27803..28150 1 NC_010501.1 KEGG: pap:PSPA7_4016 heavy metal efflux system protein, putative; hypothetical protein 28150 6109193 PputW619_0023 Pseudomonas putida W619 hypothetical protein YP_001746898.1 27803 D 390235 CDS YP_001746899.1 170719211 6109194 complement(28565..29224) 1 NC_010501.1 KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 29224 6109194 PputW619_0024 Pseudomonas putida W619 isoprenylcysteine carboxyl methyltransferase YP_001746899.1 28565 R 390235 CDS YP_001746900.1 170719212 6109195 complement(29221..29496) 1 NC_010501.1 KEGG: ajs:Ajs_1465 hypothetical protein; hypothetical protein 29496 6109195 PputW619_0025 Pseudomonas putida W619 hypothetical protein YP_001746900.1 29221 R 390235 CDS YP_001746901.1 170719213 6109196 complement(29522..29977) 1 NC_010501.1 KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein 29977 6109196 PputW619_0026 Pseudomonas putida W619 hypothetical protein YP_001746901.1 29522 R 390235 CDS YP_001746902.1 170719214 6109197 complement(30116..31138) 1 NC_010501.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: net:Neut_0066 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 31138 6109197 PputW619_0027 Pseudomonas putida W619 hypothetical protein YP_001746902.1 30116 R 390235 CDS YP_001746903.1 170719215 6109198 complement(31404..31595) 1 NC_010501.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pmy:Pmen_2225 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 31595 6109198 PputW619_0028 Pseudomonas putida W619 heavy metal transport/detoxification protein YP_001746903.1 31404 R 390235 CDS YP_001746904.1 170719216 6109199 complement(31942..34329) 1 NC_010501.1 KEGG: pmy:Pmen_2229 copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase 34329 6109199 PputW619_0029 Pseudomonas putida W619 copper-translocating P-type ATPase YP_001746904.1 31942 R 390235 CDS YP_001746905.1 170719217 6109200 34741..34947 1 NC_010501.1 KEGG: pap:PSPA7_3842 probable transcriptional regulator; putative transcriptional regulator 34947 6109200 PputW619_0030 Pseudomonas putida W619 putative transcriptional regulator YP_001746905.1 34741 D 390235 CDS YP_001746906.1 170719218 6109201 35679..36488 1 NC_010501.1 KEGG: rso:RSc1705 hypothetical protein; hypothetical protein 36488 6109201 PputW619_0031 Pseudomonas putida W619 hypothetical protein YP_001746906.1 35679 D 390235 CDS YP_001746907.1 170719219 6109202 complement(36672..36977) 1 NC_010501.1 hypothetical protein 36977 6109202 PputW619_0032 Pseudomonas putida W619 hypothetical protein YP_001746907.1 36672 R 390235 CDS YP_001746908.1 170719220 6109203 complement(37235..38023) 1 NC_010501.1 PFAM: Silent information regulator protein Sir2; thiamine pyrophosphate protein central region; KEGG: pst:PSPTO_4675 transcriptional regulator, Sir2 family; silent information regulator protein Sir2 38023 6109203 PputW619_0033 Pseudomonas putida W619 silent information regulator protein Sir2 YP_001746908.1 37235 R 390235 CDS YP_001746909.1 170719221 6109204 38230..38886 1 NC_010501.1 KEGG: eba:ebA2473 hypothetical gene; hypothetical protein 38886 6109204 PputW619_0034 Pseudomonas putida W619 hypothetical protein YP_001746909.1 38230 D 390235 CDS YP_001746910.1 170719222 6109205 39299..39607 1 NC_010501.1 KEGG: asa:ASA_P4G008 hypothetical protein; hypothetical protein 39607 6109205 PputW619_0035 Pseudomonas putida W619 hypothetical protein YP_001746910.1 39299 D 390235 CDS YP_001746911.1 170719223 6109206 complement(39630..40172) 1 NC_010501.1 KEGG: bpt:Bpet0213 transposition protein, TnsC-related protein; hypothetical protein 40172 6109206 PputW619_0036 Pseudomonas putida W619 hypothetical protein YP_001746911.1 39630 R 390235 CDS YP_001746912.1 170719224 6109207 complement(40313..41848) 1 NC_010501.1 PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase; transposase IS66 41848 6109207 PputW619_0037 Pseudomonas putida W619 transposase IS66 YP_001746912.1 40313 R 390235 CDS YP_001746913.1 170719225 6109208 complement(41912..42247) 1 NC_010501.1 PFAM: IS66 Orf2 family protein; KEGG: pau:PA14_59570 putative transposase; IS66 Orf2 family protein 42247 6109208 PputW619_0038 Pseudomonas putida W619 IS66 Orf2 family protein YP_001746913.1 41912 R 390235 CDS YP_001746914.1 170719226 6109209 complement(42244..42564) 1 NC_010501.1 PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_59560 putative transposase; transposase IS3/IS911 family protein 42564 6109209 PputW619_0039 Pseudomonas putida W619 transposase IS3/IS911 family protein YP_001746914.1 42244 R 390235 CDS YP_001746915.1 170719227 6109210 42765..43496 1 NC_010501.1 KEGG: pap:PSPA7_4526 hypothetical protein; hypothetical protein 43496 6109210 PputW619_0040 Pseudomonas putida W619 hypothetical protein YP_001746915.1 42765 D 390235 CDS YP_001746916.1 170719228 6109211 complement(44291..44419) 1 NC_010501.1 KEGG: sbn:Sbal195_4409 hypothetical protein; hypothetical protein 44419 6109211 PputW619_0041 Pseudomonas putida W619 hypothetical protein YP_001746916.1 44291 R 390235 CDS YP_001746917.1 170719229 6109212 complement(44542..46239) 1 NC_010501.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pau:PA14_39020 hypothetical protein; hypothetical protein 46239 6109212 PputW619_0042 Pseudomonas putida W619 hypothetical protein YP_001746917.1 44542 R 390235 CDS YP_001746918.1 170719230 6109213 47123..48028 1 NC_010501.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pfl:PFL_5222 cobalt/cadmium/zinc transporter, CDF family; cation diffusion facilitator family transporter 48028 6109213 PputW619_0043 Pseudomonas putida W619 cation diffusion facilitator family transporter YP_001746918.1 47123 D 390235 CDS YP_001746919.1 170719231 6109214 48186..48536 1 NC_010501.1 KEGG: mms:mma_3055 hypothetical protein; hypothetical protein 48536 6109214 PputW619_0044 Pseudomonas putida W619 hypothetical protein YP_001746919.1 48186 D 390235 CDS YP_001746920.1 170719232 6109215 complement(48569..48895) 1 NC_010501.1 KEGG: psb:Psyr_4809 hypothetical protein; hypothetical protein 48895 6109215 PputW619_0045 Pseudomonas putida W619 hypothetical protein YP_001746920.1 48569 R 390235 CDS YP_001746921.1 170719233 6109216 49585..50259 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 50259 6109216 PputW619_0046 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001746921.1 49585 D 390235 CDS YP_001746922.1 170719234 6109217 50256..51674 1 NC_010501.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 51674 6109217 PputW619_0047 Pseudomonas putida W619 heavy metal sensor signal transduction histidine kinase YP_001746922.1 50256 D 390235 CDS YP_001746923.1 170719235 6109218 complement(51732..52319) 1 NC_010501.1 hypothetical protein 52319 6109218 PputW619_0048 Pseudomonas putida W619 hypothetical protein YP_001746923.1 51732 R 390235 CDS YP_001746924.1 170719236 6109219 52586..52807 1 NC_010501.1 hypothetical protein 52807 6109219 PputW619_0049 Pseudomonas putida W619 hypothetical protein YP_001746924.1 52586 D 390235 CDS YP_001746925.1 170719237 6109220 complement(52890..54344) 1 NC_010501.1 PFAM: glycosyl transferase family 39; KEGG: pap:PSPA7_5537 hypothetical protein; glycosyl transferase family protein 54344 6109220 PputW619_0050 Pseudomonas putida W619 glycosyl transferase family protein YP_001746925.1 52890 R 390235 CDS YP_001746926.1 170719238 6109221 complement(54338..55321) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: vha:VIBHAR_02791 hypothetical protein; ribonuclease III 55321 6109221 PputW619_0051 Pseudomonas putida W619 ribonuclease III YP_001746926.1 54338 R 390235 CDS YP_001746927.1 170719239 6109222 complement(55287..55706) 1 NC_010501.1 PFAM: GtrA family protein; KEGG: sde:Sde_0136 hypothetical protein; GtrA family protein 55706 6109222 PputW619_0052 Pseudomonas putida W619 GtrA family protein YP_001746927.1 55287 R 390235 CDS YP_001746928.1 170719240 6109223 55964..56932 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2828 transcriptional regulator, LysR family; LysR family transcriptional regulator 56932 6109223 PputW619_0053 Pseudomonas putida W619 LysR family transcriptional regulator YP_001746928.1 55964 D 390235 CDS YP_001746929.1 170719241 6109224 57143..58450 1 NC_010501.1 PFAM: phosphate-selective porin O and P; KEGG: pau:PA14_21620 phosphate-specific outer membrane porin OprP precursor; phosphate-selective porin O and P 58450 6109224 PputW619_0054 Pseudomonas putida W619 phosphate-selective porin O and P YP_001746929.1 57143 D 390235 CDS YP_001746930.1 170719242 6109225 58470..58604 1 NC_010501.1 hypothetical protein 58604 6109225 PputW619_0055 Pseudomonas putida W619 hypothetical protein YP_001746930.1 58470 D 390235 CDS YP_001746931.1 170719243 6109226 58749..59774 1 NC_010501.1 hypothetical protein 59774 6109226 PputW619_0056 Pseudomonas putida W619 hypothetical protein YP_001746931.1 58749 D 390235 CDS YP_001746932.1 170719244 6109227 59902..60126 1 NC_010501.1 hypothetical protein 60126 6109227 PputW619_0057 Pseudomonas putida W619 hypothetical protein YP_001746932.1 59902 D 390235 CDS YP_001746933.1 170719245 6109228 complement(60219..62216) 1 NC_010501.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_4435 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 62216 6109228 PputW619_0058 Pseudomonas putida W619 heavy metal translocating P-type ATPase YP_001746933.1 60219 R 390235 CDS YP_001746934.1 170719246 6109229 complement(62419..62742) 1 NC_010501.1 KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein 62742 6109229 PputW619_0059 Pseudomonas putida W619 hypothetical protein YP_001746934.1 62419 R 390235 CDS YP_001746935.1 170719247 6109230 complement(62905..66066) 1 NC_010501.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein 66066 6109230 PputW619_0060 Pseudomonas putida W619 CzcA family heavy metal efflux protein YP_001746935.1 62905 R 390235 CDS YP_001746936.1 170719248 6109231 complement(66091..67341) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit 67341 6109231 PputW619_0061 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001746936.1 66091 R 390235 CDS YP_001746937.1 170719249 6109232 complement(67410..68681) 1 NC_010501.1 PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein 68681 6109232 PputW619_0062 Pseudomonas putida W619 outer membrane efflux protein YP_001746937.1 67410 R 390235 CDS YP_001746938.1 170719250 6109233 69085..70428 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 70428 6109233 PputW619_0063 Pseudomonas putida W619 outer membrane porin YP_001746938.1 69085 D 390235 CDS YP_001746939.1 170719251 6109234 70917..71591 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5221 DNA-binding heavy metal response regulator, putative; two component heavy metal response transcriptional regulator 71591 6109234 PputW619_0064 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001746939.1 70917 D 390235 CDS YP_001746940.1 170719252 6109235 71709..72032 1 NC_010501.1 KEGG: yen:YE1651 hypothetical protein; hypothetical protein 72032 6109235 PputW619_0065 Pseudomonas putida W619 hypothetical protein YP_001746940.1 71709 D 390235 CDS YP_001746941.1 170719253 6109236 complement(72134..72661) 1 NC_010501.1 hypothetical protein 72661 6109236 PputW619_0066 Pseudomonas putida W619 hypothetical protein YP_001746941.1 72134 R 390235 CDS YP_001746942.1 170719254 6109237 complement(72851..74317) 1 NC_010501.1 KEGG: nwi:Nwi_0260 hypothetical protein; hypothetical protein 74317 6109237 PputW619_0067 Pseudomonas putida W619 hypothetical protein YP_001746942.1 72851 R 390235 CDS YP_001746943.1 170719255 6109238 complement(74330..74779) 1 NC_010501.1 hypothetical protein 74779 6109238 PputW619_0068 Pseudomonas putida W619 hypothetical protein YP_001746943.1 74330 R 390235 CDS YP_001746944.1 170719256 6109239 complement(75471..75896) 1 NC_010501.1 KEGG: bxe:Bxe_B1530 hypothetical protein; integral membrane protein-like protein 75896 6109239 PputW619_0069 Pseudomonas putida W619 integral membrane protein-like protein YP_001746944.1 75471 R 390235 CDS YP_001746945.1 170719257 6109240 complement(76031..77335) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN0005 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 77335 6109240 PputW619_0070 Pseudomonas putida W619 putative sigma-54 specific transcriptional regulator YP_001746945.1 76031 R 390235 CDS YP_001746946.1 170719258 6109241 77559..78443 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 78443 6109241 PputW619_0071 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001746946.1 77559 D 390235 CDS YP_001746947.1 170719259 6109242 78483..79754 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0008 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 79754 6109242 PputW619_0072 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001746947.1 78483 D 390235 CDS YP_001746948.1 170719260 6109243 79751..80569 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein; hypothetical protein 80569 6109243 PputW619_0073 Pseudomonas putida W619 hypothetical protein YP_001746948.1 79751 D 390235 CDS YP_001746949.1 170719261 6109244 complement(80558..81445) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0010 transcriptional regulator, LysR family; LysR family transcriptional regulator 81445 6109244 PputW619_0074 Pseudomonas putida W619 LysR family transcriptional regulator YP_001746949.1 80558 R 390235 CDS YP_001746950.1 170719262 6109245 81572..83218 1 NC_010501.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0012 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 83218 6109245 PputW619_0075 Pseudomonas putida W619 glucose-methanol-choline oxidoreductase YP_001746950.1 81572 D 390235 CDS YP_001746951.1 170719263 6109246 83316..84935 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0013 major facilitator family transporter; general substrate transporter 84935 6109246 PputW619_0076 Pseudomonas putida W619 general substrate transporter YP_001746951.1 83316 D 390235 CDS YP_001746952.1 170719264 6109247 complement(85113..85883) 1 NC_010501.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0014 N-acylhomoserine lactone synthase; phospholipid/glycerol acyltransferase 85883 6109247 PputW619_0077 Pseudomonas putida W619 phospholipid/glycerol acyltransferase YP_001746952.1 85113 R 390235 CDS YP_001746953.1 170719265 6109248 complement(85944..86471) 1 NC_010501.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 86471 6109248 PputW619_0078 Pseudomonas putida W619 D,D-heptose 1,7-bisphosphate phosphatase YP_001746953.1 85944 R 390235 CDS YP_001746954.1 170719266 6109249 complement(86475..88526) 1 NC_010501.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 88526 glyS 6109249 glyS Pseudomonas putida W619 glycyl-tRNA synthetase subunit beta YP_001746954.1 86475 R 390235 CDS YP_001746955.1 170719267 6109250 complement(88523..89470) 1 NC_010501.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 89470 glyQ 6109250 glyQ Pseudomonas putida W619 glycyl-tRNA synthetase subunit alpha YP_001746955.1 88523 R 390235 CDS YP_001746956.1 170719268 6109251 89554..90105 1 NC_010501.1 KEGG: pen:PSEEN0018 3-methyl-adenine DNA glycosylase I, constitutive; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 90105 6109251 PputW619_0081 Pseudomonas putida W619 DNA-3-methyladenine glycosylase I YP_001746956.1 89554 D 390235 CDS YP_001746957.1 170719269 6109252 90147..91034 1 NC_010501.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 91034 6109252 PputW619_0082 Pseudomonas putida W619 lipid A biosynthesis lauroyl acyltransferase YP_001746957.1 90147 D 390235 CDS YP_001746958.1 170719270 6109253 complement(91151..91459) 1 NC_010501.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0021 hypothetical protein; hypothetical protein 91459 6109253 PputW619_0083 Pseudomonas putida W619 hypothetical protein YP_001746958.1 91151 R 390235 CDS YP_001746959.1 170719271 6109254 complement(91471..92844) 1 NC_010501.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 92844 trkA 6109254 trkA Pseudomonas putida W619 potassium transporter peripheral membrane protein YP_001746959.1 91471 R 390235 CDS YP_001746960.1 170719272 6109255 complement(92867..94177) 1 NC_010501.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pen:PSEEN0023 ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase); sun protein 94177 6109255 PputW619_0085 Pseudomonas putida W619 sun protein YP_001746960.1 92867 R 390235 CDS YP_001746961.1 170719273 6109256 complement(94174..95106) 1 NC_010501.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 95106 fmt 6109256 fmt Pseudomonas putida W619 methionyl-tRNA formyltransferase YP_001746961.1 94174 R 390235 CDS YP_001746962.1 170719274 6109257 complement(95166..95672) 1 NC_010501.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 95672 def 6109257 def Pseudomonas putida W619 peptide deformylase YP_001746962.1 95166 R 390235 CDS YP_001746963.1 170719275 6109258 95879..96976 1 NC_010501.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pen:PSEEN0026 smf protein, DNA processing chain A; DNA protecting protein DprA 96976 6109258 PputW619_0088 Pseudomonas putida W619 DNA protecting protein DprA YP_001746963.1 95879 D 390235 CDS YP_001746964.1 170719276 6109259 97015..97572 1 NC_010501.1 PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN0027 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 97572 6109259 PputW619_0089 Pseudomonas putida W619 SUA5/yciO/yrdC domain-containing protein YP_001746964.1 97015 D 390235 CDS YP_001746965.1 170719277 6109260 97956..98258 1 NC_010501.1 KEGG: pen:PSEEN0028 hypothetical protein; hypothetical protein 98258 6109260 PputW619_0090 Pseudomonas putida W619 hypothetical protein YP_001746965.1 97956 D 390235 CDS YP_001746966.1 170719278 6109261 complement(98366..99343) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0029 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase 99343 6109261 PputW619_0091 Pseudomonas putida W619 alcohol dehydrogenase YP_001746966.1 98366 R 390235 CDS YP_001746967.1 170719279 6109262 99478..100389 1 NC_010501.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 100389 6109262 PputW619_0092 Pseudomonas putida W619 coproporphyrinogen III oxidase YP_001746967.1 99478 D 390235 CDS YP_001746968.1 170719280 6109263 100415..101239 1 NC_010501.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 101239 aroE 6109263 aroE Pseudomonas putida W619 shikimate 5-dehydrogenase YP_001746968.1 100415 D 390235 CDS YP_001746969.1 170719281 6109264 complement(101331..102896) 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0032 sulfate transporter; sulfate transporter 102896 6109264 PputW619_0094 Pseudomonas putida W619 sulfate transporter YP_001746969.1 101331 R 390235 CDS YP_001746970.1 170719282 6109265 complement(103050..103973) 1 NC_010501.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN0033 glycine betaine-binding protein; choline ABC transporter periplasmic binding protein 103973 6109265 PputW619_0095 Pseudomonas putida W619 choline ABC transporter periplasmic binding protein YP_001746970.1 103050 R 390235 CDS YP_001746971.1 170719283 6109266 complement(103988..105505) 1 NC_010501.1 TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: pen:PSEEN0034 choline sulfatase; choline-sulfatase 105505 6109266 PputW619_0096 Pseudomonas putida W619 choline-sulfatase YP_001746971.1 103988 R 390235 CDS YP_001746972.1 170719284 6109267 105615..106514 1 NC_010501.1 TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0035 transcriptional regulator, LysR family; LysR family transcriptional regulator 106514 6109267 PputW619_0097 Pseudomonas putida W619 LysR family transcriptional regulator YP_001746972.1 105615 D 390235 CDS YP_001746973.1 170719285 6109268 complement(106608..107156) 1 NC_010501.1 KEGG: pfo:Pfl_0028 hypothetical protein; hypothetical protein 107156 6109268 PputW619_0098 Pseudomonas putida W619 hypothetical protein YP_001746973.1 106608 R 390235 CDS YP_001746974.1 170719286 6109269 107210..107542 1 NC_010501.1 PFAM: Dopa 45-dioxygenase; KEGG: pen:PSEEN0036 hypothetical protein; DOPA 45-dioxygenase 107542 6109269 PputW619_0099 Pseudomonas putida W619 DOPA 45-dioxygenase YP_001746974.1 107210 D 390235 CDS YP_001746975.1 170719287 6109270 complement(107591..108400) 1 NC_010501.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 108400 trpA 6109270 trpA Pseudomonas putida W619 tryptophan synthase subunit alpha YP_001746975.1 107591 R 390235 CDS YP_001746976.1 170719288 6109271 complement(108397..109614) 1 NC_010501.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 109614 6109271 PputW619_0101 Pseudomonas putida W619 tryptophan synthase subunit beta YP_001746976.1 108397 R 390235 CDS YP_001746977.1 170719289 6109272 109725..110621 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0039 transcriptional regulator TrpI; LysR family transcriptional regulator 110621 6109272 PputW619_0102 Pseudomonas putida W619 LysR family transcriptional regulator YP_001746977.1 109725 D 390235 CDS YP_001746978.1 170719290 6109273 complement(110618..110941) 1 NC_010501.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN0040 hypothetical protein; hypothetical protein 110941 6109273 PputW619_0103 Pseudomonas putida W619 hypothetical protein YP_001746978.1 110618 R 390235 CDS YP_001746979.1 170719291 6109274 111092..111307 1 NC_010501.1 PFAM: protein of unknown function DUF1458; KEGG: pen:PSEEN0041 hypothetical protein; hypothetical protein 111307 6109274 PputW619_0104 Pseudomonas putida W619 hypothetical protein YP_001746979.1 111092 D 390235 CDS YP_001746980.1 170719292 6109275 111410..111631 1 NC_010501.1 PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0042 hypothetical protein; hypothetical protein 111631 6109275 PputW619_0105 Pseudomonas putida W619 hypothetical protein YP_001746980.1 111410 D 390235 CDS YP_001746981.1 170719293 6109276 complement(111729..112733) 1 NC_010501.1 PFAM: luciferase family protein; KEGG: pen:PSEEN0043 luciferase-like monooxygenase; luciferase family protein 112733 6109276 PputW619_0106 Pseudomonas putida W619 luciferase family protein YP_001746981.1 111729 R 390235 CDS YP_001746982.1 170719294 6109277 112888..113313 1 NC_010501.1 PFAM: OsmC family protein; KEGG: pap:PSPA7_0059 osmotically inducible protein OsmC; OsmC family protein 113313 6109277 PputW619_0107 Pseudomonas putida W619 OsmC family protein YP_001746982.1 112888 D 390235 CDS YP_001746983.1 170719295 6109278 113387..113617 1 NC_010501.1 PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein; hypothetical protein 113617 6109278 PputW619_0108 Pseudomonas putida W619 hypothetical protein YP_001746983.1 113387 D 390235 CDS YP_001746984.1 170719296 6109279 complement(113657..114070) 1 NC_010501.1 KEGG: pen:PSEEN0045 lipoprotein; lipoprotein 114070 6109279 PputW619_0109 Pseudomonas putida W619 lipoprotein YP_001746984.1 113657 R 390235 CDS YP_001746985.1 170719297 6109280 complement(114126..114539) 1 NC_010501.1 KEGG: pen:PSEEN0046 lipoprotein; lipoprotein 114539 6109280 PputW619_0110 Pseudomonas putida W619 lipoprotein YP_001746985.1 114126 R 390235 CDS YP_001746986.1 170719298 6109281 114606..115697 1 NC_010501.1 KEGG: pen:PSEEN0047 hypothetical protein; hypothetical protein 115697 6109281 PputW619_0111 Pseudomonas putida W619 hypothetical protein YP_001746986.1 114606 D 390235 CDS YP_001746987.1 170719299 6109282 complement(115753..116427) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0048 hydrolase, HAD family; HAD family hydrolase 116427 6109282 PputW619_0112 Pseudomonas putida W619 HAD family hydrolase YP_001746987.1 115753 R 390235 CDS YP_001746988.1 170719300 6109283 complement(116424..116972) 1 NC_010501.1 KEGG: pen:PSEEN0049 transferase; transferase 116972 6109283 PputW619_0113 Pseudomonas putida W619 transferase YP_001746988.1 116424 R 390235 CDS YP_001746989.1 170719301 6109284 117039..119126 1 NC_010501.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pen:PSEEN0050 oligopeptidase A; oligopeptidase A 119126 6109284 PputW619_0114 Pseudomonas putida W619 oligopeptidase A YP_001746989.1 117039 D 390235 CDS YP_001746990.1 170719302 6109285 119123..119404 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0051 hypothetical protein; hypothetical protein 119404 6109285 PputW619_0115 Pseudomonas putida W619 hypothetical protein YP_001746990.1 119123 D 390235 CDS YP_001746991.1 170719303 6109286 119503..121497 1 NC_010501.1 PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pfo:Pfl_0088 oligopeptidase A; peptidase M3A and M3B thimet/oligopeptidase F 121497 6109286 PputW619_0116 Pseudomonas putida W619 peptidase M3A and M3B thimet/oligopeptidase F YP_001746991.1 119503 D 390235 CDS YP_001746992.1 170719304 6109287 121563..122621 1 NC_010501.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN0052 hypothetical protein; radical SAM domain-containing protein 122621 6109287 PputW619_0117 Pseudomonas putida W619 radical SAM domain-containing protein YP_001746992.1 121563 D 390235 CDS YP_001746993.1 170719305 6109288 122893..123612 1 NC_010501.1 PFAM: carbonic anhydrase; KEGG: pen:PSEEN0053 carbonic anhydrase; carbonate dehydratase 123612 6109288 PputW619_0118 Pseudomonas putida W619 carbonate dehydratase YP_001746993.1 122893 D 390235 CDS YP_001746994.1 170719306 6109289 123805..125331 1 NC_010501.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0054 sulfate transporter; sulfate transporter 125331 6109289 PputW619_0119 Pseudomonas putida W619 sulfate transporter YP_001746994.1 123805 D 390235 CDS YP_001746995.1 170719307 6109290 complement(125334..126422) 1 NC_010501.1 KEGG: gdi:GDI3666 hypothetical protein; hypothetical protein 126422 6109290 PputW619_0120 Pseudomonas putida W619 hypothetical protein YP_001746995.1 125334 R 390235 CDS YP_001746996.1 170719308 6109291 complement(126539..127180) 1 NC_010501.1 KEGG: pen:PSEEN0055 hypothetical protein; hypothetical protein 127180 6109291 PputW619_0121 Pseudomonas putida W619 hypothetical protein YP_001746996.1 126539 R 390235 CDS YP_001746997.1 170719309 6109292 127550..128677 1 NC_010501.1 TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: pen:PSEEN0056 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 128677 6109292 PputW619_0122 Pseudomonas putida W619 cytochrome c oxidase subunit II YP_001746997.1 127550 D 390235 CDS YP_001746998.1 170719310 6109293 128721..130310 1 NC_010501.1 KEGG: pen:PSEEN0057 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 130310 6109293 PputW619_0123 Pseudomonas putida W619 cytochrome c oxidase subunit I YP_001746998.1 128721 D 390235 CDS YP_001746999.1 170719311 6109294 130321..130887 1 NC_010501.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 130887 6109294 PputW619_0124 Pseudomonas putida W619 cytochrome C oxidase assembly protein YP_001746999.1 130321 D 390235 CDS YP_001747000.1 170719312 6109295 130904..131791 1 NC_010501.1 PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0059 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 131791 6109295 PputW619_0125 Pseudomonas putida W619 cytochrome c oxidase subunit III YP_001747000.1 130904 D 390235 CDS YP_001747001.1 170719313 6109296 complement(131927..132130) 1 NC_010501.1 KEGG: pen:PSEEN0060 hypothetical protein; hypothetical protein 132130 6109296 PputW619_0126 Pseudomonas putida W619 hypothetical protein YP_001747001.1 131927 R 390235 CDS YP_001747002.1 170719314 6109297 132158..132922 1 NC_010501.1 KEGG: pen:PSEEN0061 hypothetical protein; hypothetical protein 132922 6109297 PputW619_0127 Pseudomonas putida W619 hypothetical protein YP_001747002.1 132158 D 390235 CDS YP_001747003.1 170719315 6109298 132888..133472 1 NC_010501.1 KEGG: pen:PSEEN0062 hypothetical protein; hypothetical protein 133472 6109298 PputW619_0128 Pseudomonas putida W619 hypothetical protein YP_001747003.1 132888 D 390235 CDS YP_001747004.1 170719316 6109299 133483..134556 1 NC_010501.1 PFAM: cytochrome oxidase assembly; KEGG: pen:PSEEN0063 cytochrome oxidase assembly protein; cytochrome oxidase assembly 134556 6109299 PputW619_0129 Pseudomonas putida W619 cytochrome oxidase assembly YP_001747004.1 133483 D 390235 CDS YP_001747005.1 170719317 6108909 134541..135434 1 NC_010501.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 135434 6108909 PputW619_0130 Pseudomonas putida W619 protoheme IX farnesyltransferase YP_001747005.1 134541 D 390235 CDS YP_001747006.1 170719318 6108910 135431..136063 1 NC_010501.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN0065 electron transport protein, Sco1/SenC family; electron transport protein SCO1/SenC 136063 6108910 PputW619_0131 Pseudomonas putida W619 electron transport protein SCO1/SenC YP_001747006.1 135431 D 390235 CDS YP_001747007.1 170719319 6108911 complement(136161..137264) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5489 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 137264 6108911 PputW619_0132 Pseudomonas putida W619 extracellular solute-binding protein YP_001747007.1 136161 R 390235 CDS YP_001747008.1 170719320 6108912 complement(137264..138307) 1 NC_010501.1 PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN5488 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein 138307 6108912 PputW619_0133 Pseudomonas putida W619 histone deacetylase superfamily protein YP_001747008.1 137264 R 390235 CDS YP_001747009.1 170719321 6108913 complement(138419..139411) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN5487 transcriptional regulator, AraC family; AraC family transcriptional regulator 139411 6108913 PputW619_0134 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747009.1 138419 R 390235 CDS YP_001747010.1 170719322 6108914 complement(139568..141025) 1 NC_010501.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 141025 aspA 6108914 aspA Pseudomonas putida W619 aspartate ammonia-lyase YP_001747010.1 139568 R 390235 CDS YP_001747011.1 170719323 6108915 141175..142092 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5481 transcriptional regulator, LysR family; LysR family transcriptional regulator 142092 6108915 PputW619_0136 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747011.1 141175 D 390235 CDS YP_001747012.1 170719324 6108916 complement(142084..142704) 1 NC_010501.1 KEGG: pst:PSPTO_5497 hypothetical protein; hypothetical protein 142704 6108916 PputW619_0137 Pseudomonas putida W619 hypothetical protein YP_001747012.1 142084 R 390235 CDS YP_001747013.1 170719325 6108917 142974..143465 1 NC_010501.1 KEGG: pen:PSEEN5480 phosphoribosylaminoimidazole carboxylase, mutase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 143465 6108917 PputW619_0138 Pseudomonas putida W619 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001747013.1 142974 D 390235 CDS YP_001747014.1 170719326 6108918 143476..144558 1 NC_010501.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 144558 6108918 PputW619_0139 Pseudomonas putida W619 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001747014.1 143476 D 390235 CDS YP_001747015.1 170719327 6108919 144667..144912 1 NC_010501.1 PFAM: Transglycosylase-associated protein; KEGG: pen:PSEEN5478 hypothetical protein; transglycosylase-associated protein 144912 6108919 PputW619_0140 Pseudomonas putida W619 transglycosylase-associated protein YP_001747015.1 144667 D 390235 CDS YP_001747016.1 170719328 6108920 144961..145494 1 NC_010501.1 KEGG: pen:PSEEN5477 hypothetical protein; hypothetical protein 145494 6108920 PputW619_0141 Pseudomonas putida W619 hypothetical protein YP_001747016.1 144961 D 390235 CDS YP_001747017.1 170719329 6108921 complement(145581..146477) 1 NC_010501.1 PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN5476 aldose 1-epimerase; aldose 1-epimerase 146477 6108921 PputW619_0142 Pseudomonas putida W619 aldose 1-epimerase YP_001747017.1 145581 R 390235 CDS YP_001747018.1 170719330 6108922 complement(146549..146947) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pfo:Pfl_5617 thioesterase superfamily; thioesterase superfamily protein 146947 6108922 PputW619_0143 Pseudomonas putida W619 thioesterase superfamily protein YP_001747018.1 146549 R 390235 CDS YP_001747019.1 170719331 6108923 147305..148594 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN5474 permease (MFS superfamily); major facilitator transporter 148594 6108923 PputW619_0144 Pseudomonas putida W619 major facilitator transporter YP_001747019.1 147305 D 390235 CDS YP_001747020.1 170719332 6108924 148760..149758 1 NC_010501.1 TIGRFAM: phosphate binding protein; KEGG: pen:PSEEN5473 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate binding protein 149758 6108924 PputW619_0145 Pseudomonas putida W619 phosphate binding protein YP_001747020.1 148760 D 390235 CDS YP_001747021.1 170719333 6108925 149897..152185 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5472 phosphate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 152185 6108925 PputW619_0146 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001747021.1 149897 D 390235 CDS YP_001747022.1 170719334 6108926 152203..153873 1 NC_010501.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5471 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 153873 6108926 PputW619_0147 Pseudomonas putida W619 phosphate ABC transporter permease YP_001747022.1 152203 D 390235 CDS YP_001747023.1 170719335 6108927 153976..154809 1 NC_010501.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 154809 6108927 PputW619_0148 Pseudomonas putida W619 phosphate transporter ATP-binding protein YP_001747023.1 153976 D 390235 CDS YP_001747024.1 170719336 6108928 154941..155711 1 NC_010501.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pen:PSEEN5469 transcriptional repressor for high affinity phosphate uptake; phosphate uptake regulator PhoU 155711 6108928 PputW619_0149 Pseudomonas putida W619 phosphate uptake regulator PhoU YP_001747024.1 154941 D 390235 CDS YP_001747025.1 170719337 6108929 155877..156779 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5468 response regulator; response regulator receiver protein 156779 6108929 PputW619_0150 Pseudomonas putida W619 response regulator receiver protein YP_001747025.1 155877 D 390235 CDS YP_001747026.1 170719338 6108930 157005..157907 1 NC_010501.1 PFAM: peptidase M23B; KEGG: pen:PSEEN5467 peptidase, M23/M37 family; peptidase M23B 157907 6108930 PputW619_0151 Pseudomonas putida W619 peptidase M23B YP_001747026.1 157005 D 390235 CDS YP_001747027.1 170719339 6108931 complement(157941..159281) 1 NC_010501.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN5466 metal ion transporter; hypothetical protein 159281 6108931 PputW619_0152 Pseudomonas putida W619 hypothetical protein YP_001747027.1 157941 R 390235 CDS YP_001747028.1 170719340 6108932 complement(159398..160705) 1 NC_010501.1 KEGG: pen:PSEEN5465 phosphate regulon sensor protein PhoR; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 160705 6108932 PputW619_0153 Pseudomonas putida W619 PAS/PAC sensor signal transduction histidine kinase YP_001747028.1 159398 R 390235 CDS YP_001747029.1 170719341 6108933 complement(160842..161531) 1 NC_010501.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN5464 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator 161531 6108933 PputW619_0154 Pseudomonas putida W619 two component transcriptional regulator YP_001747029.1 160842 R 390235 CDS YP_001747030.1 170719342 6108934 161706..162077 1 NC_010501.1 PFAM: Secreted repeat of unknown function; KEGG: pen:PSEEN5463 hypothetical protein; hypothetical protein 162077 6108934 PputW619_0155 Pseudomonas putida W619 hypothetical protein YP_001747030.1 161706 D 390235 CDS YP_001747031.1 170719343 6108935 complement(162150..163040) 1 NC_010501.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 163040 ubiA 6108935 ubiA Pseudomonas putida W619 4-hydroxybenzoate octaprenyltransferase YP_001747031.1 162150 R 390235 CDS YP_001747032.1 170719344 6108936 complement(163040..163597) 1 NC_010501.1 PFAM: Chorismate lyase; KEGG: pen:PSEEN5461 chorismate-pyruvate lyase; chorismate lyase 163597 6108936 PputW619_0157 Pseudomonas putida W619 chorismate lyase YP_001747032.1 163040 R 390235 CDS YP_001747033.1 170719345 6108937 163729..163896 1 NC_010501.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pen:PSEEN5460 rubredoxin; rubredoxin-type Fe(Cys)4 protein 163896 6108937 PputW619_0158 Pseudomonas putida W619 rubredoxin-type Fe(Cys)4 protein YP_001747033.1 163729 D 390235 CDS YP_001747034.1 170719346 6108938 163931..165079 1 NC_010501.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5459 rubredoxin-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 165079 6108938 PputW619_0159 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001747034.1 163931 D 390235 CDS YP_001747035.1 170719347 6108939 165268..165567 1 NC_010501.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN5458 DNA-binding protein HU-alpha; histone family protein DNA-binding protein 165567 6108939 PputW619_0160 Pseudomonas putida W619 histone family protein DNA-binding protein YP_001747035.1 165268 D 390235 CDS YP_001747036.1 170719348 6108940 165714..166091 1 NC_010501.1 KEGG: pen:PSEEN5457 hypothetical protein; hypothetical protein 166091 6108940 PputW619_0161 Pseudomonas putida W619 hypothetical protein YP_001747036.1 165714 D 390235 CDS YP_001747037.1 170719349 6108941 complement(166124..167527) 1 NC_010501.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN5456 hypothetical protein; putative signal transduction protein 167527 6108941 PputW619_0162 Pseudomonas putida W619 putative signal transduction protein YP_001747037.1 166124 R 390235 CDS YP_001747038.1 170719350 6108942 complement(167606..169684) 1 NC_010501.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 169684 6108942 PputW619_0163 Pseudomonas putida W619 ATP-dependent DNA helicase RecG YP_001747038.1 167606 R 390235 CDS YP_001747039.1 170719351 6108943 complement(169688..170614) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5454 transcriptional regulator, LysR family; LysR family transcriptional regulator 170614 6108943 PputW619_0164 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747039.1 169688 R 390235 CDS YP_001747040.1 170719352 6108944 complement(170709..171443) 1 NC_010501.1 TIGRFAM: TonB family protein; KEGG: pen:PSEEN5453 ferric siderophore transport system, periplasmic binding protein TonB; TonB family protein 171443 6108944 PputW619_0165 Pseudomonas putida W619 TonB family protein YP_001747040.1 170709 R 390235 CDS YP_001747041.1 170719353 6108945 complement(171440..171868) 1 NC_010501.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 171868 6108945 PputW619_0166 Pseudomonas putida W619 biopolymer transport protein ExbD YP_001747041.1 171440 R 390235 CDS YP_001747042.1 170719354 6108946 complement(171872..172843) 1 NC_010501.1 TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB; tonB-system energizer ExbB 172843 6108946 PputW619_0167 Pseudomonas putida W619 tonB-system energizer ExbB YP_001747042.1 171872 R 390235 CDS YP_001747043.1 170719355 6108947 173035..173892 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN5450 hypothetical protein; NAD-dependent epimerase/dehydratase 173892 6108947 PputW619_0168 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001747043.1 173035 D 390235 CDS YP_001747044.1 170719356 6108948 complement(173967..174692) 1 NC_010501.1 KEGG: pen:PSEEN5449 lipoprotein; lipoprotein 174692 6108948 PputW619_0169 Pseudomonas putida W619 lipoprotein YP_001747044.1 173967 R 390235 CDS YP_001747045.1 170719357 6108949 complement(174748..175128) 1 NC_010501.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN5448 endoribonuclease L-PSP; endoribonuclease L-PSP 175128 6108949 PputW619_0170 Pseudomonas putida W619 endoribonuclease L-PSP YP_001747045.1 174748 R 390235 CDS YP_001747046.1 170719358 6108950 complement(175152..177260) 1 NC_010501.1 KEGG: pen:PSEEN5447 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 177260 6108950 PputW619_0171 Pseudomonas putida W619 (p)ppGpp synthetase I SpoT/RelA YP_001747046.1 175152 R 390235 CDS YP_001747047.1 170719359 6108951 complement(177320..177583) 1 NC_010501.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 177583 rpoZ 6108951 rpoZ Pseudomonas putida W619 DNA-directed RNA polymerase subunit omega YP_001747047.1 177320 R 390235 CDS YP_001747048.1 170719360 6108952 complement(177787..178659) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5445 transcriptional regulator, LysR family; LysR family transcriptional regulator 178659 6108952 PputW619_0173 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747048.1 177787 R 390235 CDS YP_001747049.1 170719361 6108953 178865..180247 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5444 glutamine synthetase; glutamate--putrescine ligase 180247 6108953 PputW619_0174 Pseudomonas putida W619 glutamate--putrescine ligase YP_001747049.1 178865 D 390235 CDS YP_001747050.1 170719362 6108954 180252..181001 1 NC_010501.1 PFAM: peptidase C26; KEGG: pen:PSEEN5443 glutamine amidotransferase; peptidase C26 181001 6108954 PputW619_0175 Pseudomonas putida W619 peptidase C26 YP_001747050.1 180252 D 390235 CDS YP_001747051.1 170719363 6108955 181116..182654 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5442 amino acid transporter; amino acid permease-associated protein 182654 6108955 PputW619_0176 Pseudomonas putida W619 amino acid permease-associated protein YP_001747051.1 181116 D 390235 CDS YP_001747052.1 170719364 6108956 complement(182745..183365) 1 NC_010501.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 183365 gmk 6108956 gmk Pseudomonas putida W619 guanylate kinase YP_001747052.1 182745 R 390235 CDS YP_001747053.1 170719365 6108957 complement(183379..184242) 1 NC_010501.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pen:PSEEN5440 hypothetical protein; hypothetical protein 184242 6108957 PputW619_0178 Pseudomonas putida W619 hypothetical protein YP_001747053.1 183379 R 390235 CDS YP_001747054.1 170719366 6108958 184470..185192 1 NC_010501.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 185192 rph 6108958 rph Pseudomonas putida W619 ribonuclease PH YP_001747054.1 184470 D 390235 CDS YP_001747055.1 170719367 6108959 complement(185254..186033) 1 NC_010501.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN5437 catabolite repression control protein Crc; exodeoxyribonuclease III Xth 186033 6108959 PputW619_0180 Pseudomonas putida W619 exodeoxyribonuclease III Xth YP_001747055.1 185254 R 390235 CDS YP_001747056.1 170719368 6108960 186114..186755 1 NC_010501.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 186755 pyrE 6108960 pyrE Pseudomonas putida W619 orotate phosphoribosyltransferase YP_001747056.1 186114 D 390235 CDS YP_001747057.1 170719369 6108961 complement(186836..187741) 1 NC_010501.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 187741 6108961 PputW619_0182 Pseudomonas putida W619 acetylglutamate kinase YP_001747057.1 186836 R 390235 CDS YP_001747058.1 170719370 6108962 complement(187772..189169) 1 NC_010501.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pen:PSEEN5434 phosphomannomutase; phosphomannomutase 189169 6108962 PputW619_0183 Pseudomonas putida W619 phosphomannomutase YP_001747058.1 187772 R 390235 CDS YP_001747059.1 170719371 6108963 complement(189281..189736) 1 NC_010501.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 189736 dut 6108963 dut Pseudomonas putida W619 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001747059.1 189281 R 390235 CDS YP_001747060.1 170719372 6108964 complement(189742..190953) 1 NC_010501.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 190953 6108964 PputW619_0185 Pseudomonas putida W619 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001747060.1 189742 R 390235 CDS YP_001747061.1 170719373 6108965 191084..191764 1 NC_010501.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 191764 radC 6108965 radC Pseudomonas putida W619 DNA repair protein RadC YP_001747061.1 191084 D 390235 CDS YP_001747062.1 170719374 6108966 complement(191835..193424) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN5430 periplasmic binding protein; extracellular solute-binding protein 193424 6108966 PputW619_0187 Pseudomonas putida W619 extracellular solute-binding protein YP_001747062.1 191835 R 390235 CDS YP_001747063.1 170719375 6108967 193785..194021 1 NC_010501.1 required for 70S ribosome assembly; 50S ribosomal protein L28 194021 rpmB 6108967 rpmB Pseudomonas putida W619 50S ribosomal protein L28 YP_001747063.1 193785 D 390235 CDS YP_001747064.1 170719376 6108968 194032..194187 1 NC_010501.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 194187 rpmG 6108968 rpmG Pseudomonas putida W619 50S ribosomal protein L33 YP_001747064.1 194032 D 390235 CDS YP_001747065.1 170719377 6108969 complement(194310..194510) 1 NC_010501.1 hypothetical protein 194510 6108969 PputW619_0190 Pseudomonas putida W619 hypothetical protein YP_001747065.1 194310 R 390235 CDS YP_001747066.1 170719378 6108970 complement(194607..194966) 1 NC_010501.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN5425 hypothetical protein; hypothetical protein 194966 6108970 PputW619_0191 Pseudomonas putida W619 hypothetical protein YP_001747066.1 194607 R 390235 CDS YP_001747067.1 170719379 6108971 195163..196656 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN5424 aldehyde dehydrogenase; aldehyde dehydrogenase 196656 6108971 PputW619_0192 Pseudomonas putida W619 aldehyde dehydrogenase YP_001747067.1 195163 D 390235 CDS YP_001747068.1 170719380 6108972 196759..197898 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5423 major facilitator family transporter; major facilitator transporter 197898 6108972 PputW619_0193 Pseudomonas putida W619 major facilitator transporter YP_001747068.1 196759 D 390235 CDS YP_001747069.1 170719381 6108973 complement(197908..199464) 1 NC_010501.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN5422 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 199464 6108973 PputW619_0194 Pseudomonas putida W619 phospholipase D/transphosphatidylase YP_001747069.1 197908 R 390235 CDS YP_001747070.1 170719382 6108974 complement(199525..200955) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5421 transcriptional regulator, GntR family; transcriptional regulator 200955 6108974 PputW619_0195 Pseudomonas putida W619 transcriptional regulator YP_001747070.1 199525 R 390235 CDS YP_001747071.1 170719383 6108975 201134..201364 1 NC_010501.1 KEGG: pen:PSEEN5420 hypothetical protein; hypothetical protein 201364 6108975 PputW619_0196 Pseudomonas putida W619 hypothetical protein YP_001747071.1 201134 D 390235 CDS YP_001747072.1 170719384 6108976 complement(201406..202698) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5419 oxidoreductase; D-amino acid dehydrogenase; FAD dependent oxidoreductase 202698 6108976 PputW619_0197 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001747072.1 201406 R 390235 CDS YP_001747073.1 170719385 6108977 202831..203184 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5418 hypothetical protein; hypothetical protein 203184 6108977 PputW619_0198 Pseudomonas putida W619 hypothetical protein YP_001747073.1 202831 D 390235 CDS YP_001747074.1 170719386 6108978 complement(203187..203675) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5417 leucine-responsive regulatory protein; AsnC family transcriptional regulator 203675 6108978 PputW619_0199 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001747074.1 203187 R 390235 CDS YP_001747075.1 170719387 6108979 203829..205130 1 NC_010501.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 205130 6108979 PputW619_0200 Pseudomonas putida W619 D-amino acid dehydrogenase small subunit YP_001747075.1 203829 D 390235 CDS YP_001747076.1 170719388 6108980 205252..206325 1 NC_010501.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 206325 dadX 6108980 dadX Pseudomonas putida W619 alanine racemase YP_001747076.1 205252 D 390235 CDS YP_001747077.1 170719389 6108981 206436..206984 1 NC_010501.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN5414 transcriptional regulator; XRE family transcriptional regulator 206984 6108981 PputW619_0202 Pseudomonas putida W619 XRE family transcriptional regulator YP_001747077.1 206436 D 390235 CDS YP_001747078.1 170719390 6108982 207121..207543 1 NC_010501.1 KEGG: pfo:Pfl_5522 cytochrome c5; cytochrome c5 207543 6108982 PputW619_0203 Pseudomonas putida W619 cytochrome c5 YP_001747078.1 207121 D 390235 CDS YP_001747079.1 170719391 6108983 207662..209521 1 NC_010501.1 KEGG: pen:PSEEN5412 hypothetical protein; hypothetical protein 209521 6108983 PputW619_0204 Pseudomonas putida W619 hypothetical protein YP_001747079.1 207662 D 390235 CDS YP_001747080.1 170719392 6108984 complement(209636..210208) 1 NC_010501.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 210208 6108984 PputW619_0205 Pseudomonas putida W619 xanthine phosphoribosyltransferase YP_001747080.1 209636 R 390235 CDS YP_001747081.1 170719393 6108985 complement(210272..212281) 1 NC_010501.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN5410 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep 212281 6108985 PputW619_0206 Pseudomonas putida W619 ATP-dependent DNA helicase Rep YP_001747081.1 210272 R 390235 CDS YP_001747082.1 170719394 6108986 212579..214243 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN5409 diguanylate cyclase (GGDEF domain); diguanylate cyclase/phosphodiesterase 214243 6108986 PputW619_0207 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001747082.1 212579 D 390235 CDS YP_001747083.1 170719395 6108987 complement(214320..215708) 1 NC_010501.1 functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 215708 6108987 PputW619_0208 Pseudomonas putida W619 multidrug efflux protein NorA YP_001747083.1 214320 R 390235 CDS YP_001747084.1 170719396 6108988 215859..216785 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5407 transcriptional regulator, LysR family; LysR family transcriptional regulator 216785 6108988 PputW619_0209 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747084.1 215859 D 390235 CDS YP_001747085.1 170719397 6108989 217004..218902 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5406 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 218902 6108989 PputW619_0210 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001747085.1 217004 D 390235 CDS YP_001747086.1 170719398 6108990 complement(218990..220384) 1 NC_010501.1 PFAM: protein of unknown function DUF1338; KEGG: pen:PSEEN5405 hypothetical protein; hypothetical protein 220384 6108990 PputW619_0211 Pseudomonas putida W619 hypothetical protein YP_001747086.1 218990 R 390235 CDS YP_001747087.1 170719399 6108991 complement(220576..221466) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5404 transcriptional regulator, LysR family; LysR family transcriptional regulator 221466 6108991 PputW619_0212 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747087.1 220576 R 390235 CDS YP_001747088.1 170719400 6108992 221602..223092 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN5402 probable aldehyde dehydrogenase; aldehyde dehydrogenase 223092 6108992 PputW619_0213 Pseudomonas putida W619 aldehyde dehydrogenase YP_001747088.1 221602 D 390235 CDS YP_001747089.1 170719401 6108993 223233..224519 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5401 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 224519 6108993 PputW619_0214 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001747089.1 223233 D 390235 CDS YP_001747090.1 170719402 6108994 complement(224681..224923) 1 NC_010501.1 KEGG: pen:PSEEN5400 small-conductance mechanosensitive channel; hypothetical protein 224923 6108994 PputW619_0215 Pseudomonas putida W619 hypothetical protein YP_001747090.1 224681 R 390235 CDS YP_001747091.1 170719403 6108995 complement(225019..225642) 1 NC_010501.1 KEGG: hch:HCH_04153 permease of the major facilitator superfamily; hypothetical protein 225642 6108995 PputW619_0216 Pseudomonas putida W619 hypothetical protein YP_001747091.1 225019 R 390235 CDS YP_001747092.1 170719404 6108996 complement(226029..227426) 1 NC_010501.1 KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein 227426 6108996 PputW619_0217 Pseudomonas putida W619 hypothetical protein YP_001747092.1 226029 R 390235 CDS YP_001747093.1 170719405 6108997 227732..228361 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase 228361 6108997 PputW619_0218 Pseudomonas putida W619 isochorismatase hydrolase YP_001747093.1 227732 D 390235 CDS YP_001747094.1 170719406 6108998 228477..229043 1 NC_010501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN5396 hypothetical protein; antibiotic biosynthesis monooxygenase 229043 6108998 PputW619_0219 Pseudomonas putida W619 antibiotic biosynthesis monooxygenase YP_001747094.1 228477 D 390235 CDS YP_001747095.1 170719407 6108999 229082..229900 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5395 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 229900 6108999 PputW619_0220 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747095.1 229082 D 390235 CDS YP_001747096.1 170719408 6109000 230135..232117 1 NC_010501.1 PFAM: Amidohydrolase 3; KEGG: pen:PSEEN5394 puttaive metal-dependent hydrolase; amidohydrolase family; amidohydrolase 3 232117 6109000 PputW619_0221 Pseudomonas putida W619 amidohydrolase 3 YP_001747096.1 230135 D 390235 CDS YP_001747097.1 170719409 6109001 complement(232277..232549) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 232549 6109001 PputW619_0222 Pseudomonas putida W619 hypothetical protein YP_001747097.1 232277 R 390235 CDS YP_001747098.1 170719410 6109002 complement(232554..232823) 1 NC_010501.1 KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein 232823 6109002 PputW619_0223 Pseudomonas putida W619 hypothetical protein YP_001747098.1 232554 R 390235 CDS YP_001747099.1 170719411 6109003 complement(233186..234448) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pfo:Pfl_2708 outer membrane porin; outer membrane porin 234448 6109003 PputW619_0224 Pseudomonas putida W619 outer membrane porin YP_001747099.1 233186 R 390235 CDS YP_001747100.1 170719412 6109004 complement(234567..235478) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5393 transcriptional regulator, LysR family; LysR family transcriptional regulator 235478 6109004 PputW619_0225 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747100.1 234567 R 390235 CDS YP_001747101.1 170719413 6109005 complement(235595..237382) 1 NC_010501.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pen:PSEEN5389 glutathione-regulated potassium-proton antiporter; potassium efflux system protein 237382 6109005 PputW619_0226 Pseudomonas putida W619 potassium efflux system protein YP_001747101.1 235595 R 390235 CDS YP_001747102.1 170719414 6109006 complement(237545..238519) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_1956 transcriptional regulator, AraC family; AraC family transcriptional regulator 238519 6109006 PputW619_0227 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747102.1 237545 R 390235 CDS YP_001747103.1 170719415 6109007 238698..239069 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_1960 transcriptional regulator, AraC family; AraC family transcriptional regulator 239069 6109007 PputW619_0228 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747103.1 238698 D 390235 CDS YP_001747104.1 170719416 6109008 239143..239769 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_2298 isochorismatase hydrolase; isochorismatase hydrolase 239769 6109008 PputW619_0229 Pseudomonas putida W619 isochorismatase hydrolase YP_001747104.1 239143 D 390235 CDS YP_001747105.1 170719417 6109009 complement(239829..244886) 1 NC_010501.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: rme:Rmet_5309 ATP-binding region, ATPase-like protein; ATPase domain-containing protein 244886 6109009 PputW619_0230 Pseudomonas putida W619 ATPase domain-containing protein YP_001747105.1 239829 R 390235 CDS YP_001747106.1 170719418 6109010 245128..246120 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; transcriptional regulator domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rpa:RPA2109 two-component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 246120 6109010 PputW619_0231 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001747106.1 245128 D 390235 CDS YP_001747107.1 170719419 6109011 246117..246491 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pfo:Pfl_2250 response regulator receiver domain protein (CheY); response regulator receiver protein 246491 6109011 PputW619_0232 Pseudomonas putida W619 response regulator receiver protein YP_001747107.1 246117 D 390235 CDS YP_001747108.1 170719420 6109012 complement(246695..248002) 1 NC_010501.1 KEGG: psb:Psyr_2230 Mn2+/Fe2+ transporter, NRAMP family; Mn2+/Fe2+ transporter 248002 6109012 PputW619_0233 Pseudomonas putida W619 Mn2+/Fe2+ transporter YP_001747108.1 246695 R 390235 CDS YP_001747109.1 170719421 6109013 complement(248222..248482) 1 NC_010501.1 KEGG: pen:PSEEN5386 hypothetical protein; hypothetical protein 248482 6109013 PputW619_0234 Pseudomonas putida W619 hypothetical protein YP_001747109.1 248222 R 390235 CDS YP_001747110.1 170719422 6109014 complement(248622..250112) 1 NC_010501.1 KEGG: pen:PSEEN5385 magnesium chelatase subunit D; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 250112 6109014 PputW619_0235 Pseudomonas putida W619 Mg chelatase subunit ChlI YP_001747110.1 248622 R 390235 CDS YP_001747111.1 170719423 6109015 250367..252394 1 NC_010501.1 KEGG: pen:PSEEN5383 hypothetical protein; hypothetical protein 252394 6109015 PputW619_0236 Pseudomonas putida W619 hypothetical protein YP_001747111.1 250367 D 390235 CDS YP_001747112.1 170719424 6109016 complement(252411..252674) 1 NC_010501.1 PFAM: protein of unknown function DUF526; KEGG: pen:PSEEN5377 hypothetical protein; hypothetical protein 252674 6109016 PputW619_0237 Pseudomonas putida W619 hypothetical protein YP_001747112.1 252411 R 390235 CDS YP_001747113.1 170719425 6109017 253038..253376 1 NC_010501.1 PFAM: nitrogen regulatory protein P-II; KEGG: pen:PSEEN5376 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 253376 6109017 PputW619_0238 Pseudomonas putida W619 nitrogen regulatory protein P-II YP_001747113.1 253038 D 390235 CDS YP_001747114.1 170719426 6109018 253424..254758 1 NC_010501.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN5375 ammonium transporter; ammonium transporter 254758 6109018 PputW619_0239 Pseudomonas putida W619 ammonium transporter YP_001747114.1 253424 D 390235 CDS YP_001747115.1 170719427 6109019 255188..255517 1 NC_010501.1 KEGG: pen:PSEEN5374 hypothetical protein; hypothetical protein 255517 6109019 PputW619_0240 Pseudomonas putida W619 hypothetical protein YP_001747115.1 255188 D 390235 CDS YP_001747116.1 170719428 6109020 complement(255598..256293) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5369 haloacid dehalogenase-like hydrolase; HAD family hydrolase 256293 6109020 PputW619_0241 Pseudomonas putida W619 HAD family hydrolase YP_001747116.1 255598 R 390235 CDS YP_001747117.1 170719429 6109021 complement(256290..257189) 1 NC_010501.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 257189 xerC 6109021 xerC Pseudomonas putida W619 site-specific tyrosine recombinase XerC YP_001747117.1 256290 R 390235 CDS YP_001747118.1 170719430 6109022 complement(257189..257899) 1 NC_010501.1 PFAM: protein of unknown function DUF484; KEGG: pen:PSEEN5367 hypothetical protein; hypothetical protein 257899 6109022 PputW619_0243 Pseudomonas putida W619 hypothetical protein YP_001747118.1 257189 R 390235 CDS YP_001747119.1 170719431 6109023 complement(257913..258743) 1 NC_010501.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 258743 dapF 6109023 dapF Pseudomonas putida W619 diaminopimelate epimerase YP_001747119.1 257913 R 390235 CDS YP_001747120.1 170719432 6109024 complement(258748..259995) 1 NC_010501.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN5365 diaminopimelate decarboxylase; diaminopimelate decarboxylase 259995 6109024 PputW619_0245 Pseudomonas putida W619 diaminopimelate decarboxylase YP_001747120.1 258748 R 390235 CDS YP_001747121.1 170719433 6109025 complement(260005..260208) 1 NC_010501.1 KEGG: pen:PSEEN5364 lipoprotein Lppl; lipoprotein Lppl 260208 6109025 PputW619_0246 Pseudomonas putida W619 lipoprotein Lppl YP_001747121.1 260005 R 390235 CDS YP_001747122.1 170719434 6109026 260461..260793 1 NC_010501.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 260793 cyaY 6109026 cyaY Pseudomonas putida W619 frataxin-like protein YP_001747122.1 260461 D 390235 CDS YP_001747123.1 170719435 6109027 260795..261007 1 NC_010501.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN5362 hypothetical protein; hypothetical protein 261007 6109027 PputW619_0248 Pseudomonas putida W619 hypothetical protein YP_001747123.1 260795 D 390235 CDS YP_001747124.1 170719436 6109028 261142..261552 1 NC_010501.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 261552 6109028 PputW619_0249 Pseudomonas putida W619 nucleoside diphosphate kinase regulator YP_001747124.1 261142 D 390235 CDS YP_001747125.1 170719437 6109029 complement(261557..264421) 1 NC_010501.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 264421 cyaA 6109029 cyaA Pseudomonas putida W619 adenylate cyclase YP_001747125.1 261557 R 390235 CDS YP_001747126.1 170719438 6109030 complement(264568..264813) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5358 hypothetical protein; hypothetical protein 264813 6109030 PputW619_0251 Pseudomonas putida W619 hypothetical protein YP_001747126.1 264568 R 390235 CDS YP_001747127.1 170719439 6109031 complement(264883..265182) 1 NC_010501.1 KEGG: pen:PSEEN5357 hypothetical protein; hypothetical protein 265182 6109031 PputW619_0252 Pseudomonas putida W619 hypothetical protein YP_001747127.1 264883 R 390235 CDS YP_001747128.1 170719440 6109032 265330..265992 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5356 glutathione S-transferase; glutathione S-transferase domain-containing protein 265992 6109032 PputW619_0253 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001747128.1 265330 D 390235 CDS YP_001747129.1 170719441 6109033 complement(266124..267518) 1 NC_010501.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 267518 6109033 PputW619_0254 Pseudomonas putida W619 argininosuccinate lyase YP_001747129.1 266124 R 390235 CDS YP_001747130.1 170719442 6109034 267828..268571 1 NC_010501.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pen:PSEEN5354 alginate biosynthesis regulatory protein; LytTR family two component transcriptional regulator 268571 6109034 PputW619_0255 Pseudomonas putida W619 LytTR family two component transcriptional regulator YP_001747130.1 267828 D 390235 CDS YP_001747131.1 170719443 6109035 268706..269647 1 NC_010501.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 269647 hemC 6109035 hemC Pseudomonas putida W619 porphobilinogen deaminase YP_001747131.1 268706 D 390235 CDS YP_001747132.1 170719444 6109036 269644..270411 1 NC_010501.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 270411 6109036 PputW619_0257 Pseudomonas putida W619 uroporphyrinogen-III synthase YP_001747132.1 269644 D 390235 CDS YP_001747133.1 170719445 6109037 270457..271557 1 NC_010501.1 PFAM: protein of unknown function DUF513 hemX; KEGG: pen:PSEEN5351 uroporphyrin-III C-methyltransferase HemX; hypothetical protein 271557 6109037 PputW619_0258 Pseudomonas putida W619 hypothetical protein YP_001747133.1 270457 D 390235 CDS YP_001747134.1 170719446 6109038 271554..272792 1 NC_010501.1 PFAM: HemY domain protein; KEGG: pen:PSEEN5350 HemY protein; HemY domain-containing protein 272792 6109038 PputW619_0259 Pseudomonas putida W619 HemY domain-containing protein YP_001747134.1 271554 D 390235 CDS YP_001747135.1 170719447 6109039 273014..273520 1 NC_010501.1 PFAM: Disulphide bond formation protein DsbB; KEGG: pen:PSEEN0158 disulfide bond formation protein B1 (disulfide oxidoreductase 1); disulfide bond formation protein DsbB 273520 6109039 PputW619_0260 Pseudomonas putida W619 disulfide bond formation protein DsbB YP_001747135.1 273014 D 390235 CDS YP_001747136.1 170719448 6109040 273752..274222 1 NC_010501.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 274222 6109040 PputW619_0261 Pseudomonas putida W619 anti-RNA polymerase sigma 70 factor YP_001747136.1 273752 D 390235 CDS YP_001747137.1 170719449 6109041 complement(274232..274897) 1 NC_010501.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0160 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 274897 6109041 PputW619_0262 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001747137.1 274232 R 390235 CDS YP_001747138.1 170719450 6109042 275122..276126 1 NC_010501.1 KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; alginate regulatory protein AlgP 276126 6109042 PputW619_0263 Pseudomonas putida W619 alginate regulatory protein AlgP YP_001747138.1 275122 D 390235 CDS YP_001747139.1 170719451 6109043 complement(276102..276584) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0162 hypothetical protein; hypothetical protein 276584 6109043 PputW619_0264 Pseudomonas putida W619 hypothetical protein YP_001747139.1 276102 R 390235 CDS YP_001747140.1 170719452 6109044 276635..278545 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0163 ABC transporter, ATP-binding protein; ABC transporter-like protein 278545 6109044 PputW619_0265 Pseudomonas putida W619 ABC transporter-like protein YP_001747140.1 276635 D 390235 CDS YP_001747141.1 170719453 6109045 278728..279360 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0165 transporter, LysE family; lysine exporter protein LysE/YggA 279360 6109045 PputW619_0266 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001747141.1 278728 D 390235 CDS YP_001747142.1 170719454 6109046 complement(279391..280143) 1 NC_010501.1 PFAM: band 7 protein; KEGG: pen:PSEEN0166 hypothetical protein; hypothetical protein 280143 6109046 PputW619_0267 Pseudomonas putida W619 hypothetical protein YP_001747142.1 279391 R 390235 CDS YP_001747143.1 170719455 6109047 complement(280146..281495) 1 NC_010501.1 PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN0167 hypothetical protein; hypothetical protein 281495 6109047 PputW619_0268 Pseudomonas putida W619 hypothetical protein YP_001747143.1 280146 R 390235 CDS YP_001747144.1 170719456 6109048 281592..282050 1 NC_010501.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN0168 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 282050 6109048 PputW619_0269 Pseudomonas putida W619 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001747144.1 281592 D 390235 CDS YP_001747145.1 170719457 6109049 282112..282354 1 NC_010501.1 KEGG: pen:PSEEN0169 hypothetical protein; hypothetical protein 282354 6109049 PputW619_0270 Pseudomonas putida W619 hypothetical protein YP_001747145.1 282112 D 390235 CDS YP_001747146.1 170719458 6109050 282425..283063 1 NC_010501.1 KEGG: pen:PSEEN0170 hypothetical protein; hypothetical protein 283063 6109050 PputW619_0271 Pseudomonas putida W619 hypothetical protein YP_001747146.1 282425 D 390235 CDS YP_001747147.1 170719459 6109051 complement(283070..283507) 1 NC_010501.1 PFAM: CBS domain containing protein; KEGG: pen:PSEEN0171 hypothetical protein; hypothetical protein 283507 6109051 PputW619_0272 Pseudomonas putida W619 hypothetical protein YP_001747147.1 283070 R 390235 CDS YP_001747148.1 170719460 6109052 complement(283700..285430) 1 NC_010501.1 KEGG: pen:PSEEN0172 dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20; hypothetical protein 285430 6109052 PputW619_0273 Pseudomonas putida W619 hypothetical protein YP_001747148.1 283700 R 390235 CDS YP_001747149.1 170719461 6109054 complement(285659..286021) 1 NC_010501.1 KEGG: pen:PSEEN5304 hypothetical protein; hypothetical protein 286021 6109054 PputW619_0274 Pseudomonas putida W619 hypothetical protein YP_001747149.1 285659 R 390235 CDS YP_001747150.1 170719462 6109055 286148..286618 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5303 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 286618 6109055 PputW619_0275 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001747150.1 286148 D 390235 CDS YP_001747151.1 170719463 6109056 complement(286713..288089) 1 NC_010501.1 PFAM: adenylate cyclase; KEGG: pen:PSEEN5302 adenylate cyclase; adenylate cyclase 288089 6109056 PputW619_0276 Pseudomonas putida W619 adenylate cyclase YP_001747151.1 286713 R 390235 CDS YP_001747152.1 170719464 6109057 288204..289346 1 NC_010501.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 289346 6109057 PputW619_0277 Pseudomonas putida W619 acetylornithine deacetylase YP_001747152.1 288204 D 390235 CDS YP_001747153.1 170719465 6109058 289472..290770 1 NC_010501.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 290770 6109058 PputW619_0278 Pseudomonas putida W619 N-acetylglutamate synthase YP_001747153.1 289472 D 390235 CDS YP_001747154.1 170719466 6109059 complement(290834..292210) 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5299 glutamine synthetase; glutamate--putrescine ligase 292210 6109059 PputW619_0279 Pseudomonas putida W619 glutamate--putrescine ligase YP_001747154.1 290834 R 390235 CDS YP_001747155.1 170719467 6109060 292785..294143 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5297 glutamine synthetase; glutamate--putrescine ligase 294143 6109060 PputW619_0280 Pseudomonas putida W619 glutamate--putrescine ligase YP_001747155.1 292785 D 390235 CDS YP_001747156.1 170719468 6109061 294193..295554 1 NC_010501.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase 295554 6109061 PputW619_0281 Pseudomonas putida W619 putative aminotransferase YP_001747156.1 294193 D 390235 CDS YP_001747157.1 170719469 6109062 295725..296822 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5295 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 296822 6109062 PputW619_0282 Pseudomonas putida W619 extracellular solute-binding protein YP_001747157.1 295725 D 390235 CDS YP_001747158.1 170719470 6109063 296872..298077 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5294 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 298077 6109063 PputW619_0283 Pseudomonas putida W619 extracellular solute-binding protein YP_001747158.1 296872 D 390235 CDS YP_001747159.1 170719471 6109064 298138..299280 1 NC_010501.1 KEGG: pen:PSEEN5293 puttaive putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 299280 6109064 PputW619_0284 Pseudomonas putida W619 spermidine/putrescine ABC transporter ATPase YP_001747159.1 298138 D 390235 CDS YP_001747160.1 170719472 6109065 299277..300197 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5292 putrescine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 300197 6109065 PputW619_0285 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001747160.1 299277 D 390235 CDS YP_001747161.1 170719473 6109066 300194..301087 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5291 putrescine ABC transporter, permease protein; ornithine carbamoyltransferase 301087 6109066 PputW619_0286 Pseudomonas putida W619 ornithine carbamoyltransferase YP_001747161.1 300194 D 390235 CDS YP_001747162.1 170719474 6109067 301295..302383 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5289 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 302383 6109067 PputW619_0287 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001747162.1 301295 D 390235 CDS YP_001747163.1 170719475 6109068 302380..303447 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5288 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 303447 6109068 PputW619_0288 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001747163.1 302380 D 390235 CDS YP_001747164.1 170719476 6109069 303444..306509 1 NC_010501.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN5287 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 306509 6109069 PputW619_0289 Pseudomonas putida W619 acriflavin resistance protein YP_001747164.1 303444 D 390235 CDS YP_001747165.1 170719477 6109070 306694..306876 1 NC_010501.1 KEGG: pfo:Pfl_0193 hypothetical protein; hypothetical protein 306876 6109070 PputW619_0290 Pseudomonas putida W619 hypothetical protein YP_001747165.1 306694 D 390235 CDS YP_001747166.1 170719478 6109071 306925..307932 1 NC_010501.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5284 sulfate/thiosulfate import ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 307932 6109071 PputW619_0291 Pseudomonas putida W619 sulfate ABC transporter substrate-binding protein YP_001747166.1 306925 D 390235 CDS YP_001747167.1 170719479 6109072 308104..308922 1 NC_010501.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5283 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 308922 6109072 PputW619_0292 Pseudomonas putida W619 sulfate ABC transporter permease YP_001747167.1 308104 D 390235 CDS YP_001747168.1 170719480 6109073 308934..309806 1 NC_010501.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5282 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 309806 6109073 PputW619_0293 Pseudomonas putida W619 sulfate ABC transporter permease YP_001747168.1 308934 D 390235 CDS YP_001747169.1 170719481 6109074 309810..310799 1 NC_010501.1 KEGG: pen:PSEEN5281 sulfate/thiosulfate import ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 310799 6109074 PputW619_0294 Pseudomonas putida W619 sulfate ABC transporter ATPase YP_001747169.1 309810 D 390235 CDS YP_001747170.1 170719482 6109075 311103..311897 1 NC_010501.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pen:PSEEN5280 TonB-like protein; TonB family protein 311897 6109075 PputW619_0295 Pseudomonas putida W619 TonB family protein YP_001747170.1 311103 D 390235 CDS YP_001747171.1 170719483 6109076 311928..312647 1 NC_010501.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5279 biopolymer transport protein ExbB; MotA/TolQ/ExbB proton channel 312647 6109076 PputW619_0296 Pseudomonas putida W619 MotA/TolQ/ExbB proton channel YP_001747171.1 311928 D 390235 CDS YP_001747172.1 170719484 6109077 312649..313050 1 NC_010501.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN5278 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 313050 6109077 PputW619_0297 Pseudomonas putida W619 biopolymer transport protein ExbD/TolR YP_001747172.1 312649 D 390235 CDS YP_001747173.1 170719485 6109078 313275..313856 1 NC_010501.1 PFAM: protein of unknown function DUF1234; KEGG: pen:PSEEN5264 hypothetical protein; hypothetical protein 313856 6109078 PputW619_0298 Pseudomonas putida W619 hypothetical protein YP_001747173.1 313275 D 390235 CDS YP_001747174.1 170719486 6109079 313921..314751 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 314751 6109079 PputW619_0299 Pseudomonas putida W619 putative sigma-54 specific transcriptional regulator YP_001747174.1 313921 D 390235 CDS YP_001747175.1 170719487 6109080 314928..315713 1 NC_010501.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN5262 lipoprotein; NLPA lipoprotein 315713 6109080 PputW619_0300 Pseudomonas putida W619 NLPA lipoprotein YP_001747175.1 314928 D 390235 CDS YP_001747176.1 170719488 6109081 complement(315952..318315) 1 NC_010501.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN5257 penicillin amidase; peptidase S45 penicillin amidase 318315 6109081 PputW619_0301 Pseudomonas putida W619 peptidase S45 penicillin amidase YP_001747176.1 315952 R 390235 CDS YP_001747177.1 170719489 6109082 318402..318968 1 NC_010501.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; hexapaptide repeat-containing transferase 318968 6109082 PputW619_0302 Pseudomonas putida W619 hexapaptide repeat-containing transferase YP_001747177.1 318402 D 390235 CDS YP_001747178.1 170719490 6109083 complement(318947..319516) 1 NC_010501.1 KEGG: pen:PSEEN5255 hypothetical protein; hypothetical protein 319516 6109083 PputW619_0303 Pseudomonas putida W619 hypothetical protein YP_001747178.1 318947 R 390235 CDS YP_001747179.1 170719491 6109084 319636..320562 1 NC_010501.1 KEGG: pen:PSEEN5254 lipase; lipase 320562 6109084 PputW619_0304 Pseudomonas putida W619 lipase YP_001747179.1 319636 D 390235 CDS YP_001747180.1 170719492 6109085 complement(320563..321315) 1 NC_010501.1 KEGG: pen:PSEEN5253 hypothetical protein; hypothetical protein 321315 6109085 PputW619_0305 Pseudomonas putida W619 hypothetical protein YP_001747180.1 320563 R 390235 CDS YP_001747181.1 170719493 6109086 321420..322061 1 NC_010501.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN5252 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 322061 6109086 PputW619_0306 Pseudomonas putida W619 2OG-Fe(II) oxygenase YP_001747181.1 321420 D 390235 CDS YP_001747182.1 170719494 6109087 322048..322551 1 NC_010501.1 PFAM: protein of unknown function DUF523; KEGG: pfo:Pfl_5390 protein of unknown function DUF523; hypothetical protein 322551 6109087 PputW619_0307 Pseudomonas putida W619 hypothetical protein YP_001747182.1 322048 D 390235 CDS YP_001747183.1 170719495 6109088 complement(322612..323100) 1 NC_010501.1 KEGG: pen:PSEEN5250 periplasmic binding protein from ABC-type transporter; periplasmic binding protein from ABC-type transporter 323100 6109088 PputW619_0308 Pseudomonas putida W619 periplasmic binding protein from ABC-type transporter YP_001747183.1 322612 R 390235 CDS YP_001747184.1 170719496 6109089 323298..323774 1 NC_010501.1 KEGG: pen:PSEEN5249 hypothetical protein; hypothetical protein 323774 6109089 PputW619_0309 Pseudomonas putida W619 hypothetical protein YP_001747184.1 323298 D 390235 CDS YP_001747185.1 170719497 6109090 complement(323904..325133) 1 NC_010501.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 325133 6109090 PputW619_0310 Pseudomonas putida W619 D-3-phosphoglycerate dehydrogenase YP_001747185.1 323904 R 390235 CDS YP_001747186.1 170719498 6109091 325281..326702 1 NC_010501.1 PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN5247 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein 326702 6109091 PputW619_0311 Pseudomonas putida W619 FAD linked oxidase domain-containing protein YP_001747186.1 325281 D 390235 CDS YP_001747187.1 170719499 6109092 326727..327392 1 NC_010501.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pen:PSEEN5246 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 327392 6109092 PputW619_0312 Pseudomonas putida W619 fumarylacetoacetate (FAA) hydrolase YP_001747187.1 326727 D 390235 CDS YP_001747188.1 170719500 6109093 327498..328418 1 NC_010501.1 PFAM: NHL repeat containing protein; SdiA-regulated domain protein; KEGG: pen:PSEEN5245 hypothetical protein; SdiA-regulated domain-containing protein 328418 6109093 PputW619_0313 Pseudomonas putida W619 SdiA-regulated domain-containing protein YP_001747188.1 327498 D 390235 CDS YP_001747189.1 170719501 6109094 328508..329419 1 NC_010501.1 PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5244 hypothetical protein; SdiA-regulated domain-containing protein 329419 6109094 PputW619_0314 Pseudomonas putida W619 SdiA-regulated domain-containing protein YP_001747189.1 328508 D 390235 CDS YP_001747190.1 170719502 6109095 complement(329513..330187) 1 NC_010501.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 330187 6109095 PputW619_0315 Pseudomonas putida W619 ribose-5-phosphate isomerase A YP_001747190.1 329513 R 390235 CDS YP_001747191.1 170719503 6109096 330321..331835 1 NC_010501.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 331835 6109096 PputW619_0316 Pseudomonas putida W619 threonine dehydratase YP_001747191.1 330321 D 390235 CDS YP_001747192.1 170719504 6109097 331874..332299 1 NC_010501.1 KEGG: pen:PSEEN5241 hypothetical protein; hypothetical protein 332299 6109097 PputW619_0317 Pseudomonas putida W619 hypothetical protein YP_001747192.1 331874 D 390235 CDS YP_001747193.1 170719505 6109098 complement(332401..333057) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5240 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 333057 6109098 PputW619_0318 Pseudomonas putida W619 HAD family hydrolase YP_001747193.1 332401 R 390235 CDS YP_001747194.1 170719506 6109099 333199..333678 1 NC_010501.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 333678 6109099 PputW619_0319 Pseudomonas putida W619 dinucleoside polyphosphate hydrolase YP_001747194.1 333199 D 390235 CDS YP_001747195.1 170719507 6109100 333701..335980 1 NC_010501.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN5238 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase PtsP 335980 6109100 PputW619_0320 Pseudomonas putida W619 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001747195.1 333701 D 390235 CDS YP_001747196.1 170719508 6109101 complement(336095..336841) 1 NC_010501.1 PFAM: protein of unknown function DUF833; KEGG: pen:PSEEN5237 hypothetical protein; hypothetical protein 336841 6109101 PputW619_0321 Pseudomonas putida W619 hypothetical protein YP_001747196.1 336095 R 390235 CDS YP_001747197.1 170719509 6109102 336971..337753 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN5236 hypothetical protein; hypothetical protein 337753 6109102 PputW619_0322 Pseudomonas putida W619 hypothetical protein YP_001747197.1 336971 D 390235 CDS YP_001747198.1 170719510 6109103 337770..338579 1 NC_010501.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 338579 6109103 PputW619_0323 Pseudomonas putida W619 prolipoprotein diacylglyceryl transferase YP_001747198.1 337770 D 390235 CDS YP_001747199.1 170719511 6109104 338628..339599 1 NC_010501.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 339599 thyA 6109104 thyA Pseudomonas putida W619 thymidylate synthase YP_001747199.1 338628 D 390235 CDS YP_001747200.1 170719512 6109105 complement(339641..340084) 1 NC_010501.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN5233 transcriptional regulator CadR; MerR family transcriptional regulator 340084 6109105 PputW619_0325 Pseudomonas putida W619 MerR family transcriptional regulator YP_001747200.1 339641 R 390235 CDS YP_001747201.1 170719513 6109106 340167..342419 1 NC_010501.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN5232 cadmium translocating P-type ATPase; heavy metal translocating P-type ATPase 342419 6109106 PputW619_0326 Pseudomonas putida W619 heavy metal translocating P-type ATPase YP_001747201.1 340167 D 390235 CDS YP_001747202.1 170719514 6109107 342520..343389 1 NC_010501.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5231 transcriptional regulator, LysR family; LysR family transcriptional regulator 343389 6109107 PputW619_0327 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747202.1 342520 D 390235 CDS YP_001747203.1 170719515 6109108 343507..344565 1 NC_010501.1 KEGG: pen:PSEEN0267 ABC transporter, ATP-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein 344565 6109108 PputW619_0328 Pseudomonas putida W619 2-aminoethylphosphonate ABC transporter ATP-binding protein YP_001747203.1 343507 D 390235 CDS YP_001747204.1 170719516 6109109 344567..346291 1 NC_010501.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0268 ABC transporter, permease protein; 2-aminoethylphosphonate ABC transporter permease 346291 6109109 PputW619_0329 Pseudomonas putida W619 2-aminoethylphosphonate ABC transporter permease YP_001747204.1 344567 D 390235 CDS YP_001747205.1 170719517 6109110 346322..347347 1 NC_010501.1 TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0269 ABC transporter, periplasmic binding protein; 2-aminoethylphosphonate ABC transporter substrate-binding protein 347347 6109110 PputW619_0330 Pseudomonas putida W619 2-aminoethylphosphonate ABC transporter substrate-binding protein YP_001747205.1 346322 D 390235 CDS YP_001747206.1 170719518 6109111 complement(347431..348795) 1 NC_010501.1 PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN0271 hypothetical protein; GTP-binding protein HSR1-related 348795 6109111 PputW619_0331 Pseudomonas putida W619 GTP-binding protein HSR1-related YP_001747206.1 347431 R 390235 CDS YP_001747207.1 170719519 6109112 complement(348788..350212) 1 NC_010501.1 KEGG: pen:PSEEN0272 hypothetical protein; hypothetical protein 350212 6109112 PputW619_0332 Pseudomonas putida W619 hypothetical protein YP_001747207.1 348788 R 390235 CDS YP_001747208.1 170719520 6109113 350234..350749 1 NC_010501.1 PFAM: dihydrofolate reductase region; KEGG: pen:PSEEN0273 dihydrofolate reductase type I, trimethoprim resistance; dihydrofolate reductase 350749 6109113 PputW619_0333 Pseudomonas putida W619 dihydrofolate reductase YP_001747208.1 350234 D 390235 CDS YP_001747209.1 170719521 6109114 complement(350784..352175) 1 NC_010501.1 PFAM: sodium:dicarboxylate symporter; KEGG: pen:PSEEN0277 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 352175 6109114 PputW619_0334 Pseudomonas putida W619 sodium:dicarboxylate symporter YP_001747209.1 350784 R 390235 CDS YP_001747210.1 170719522 6109115 352417..353472 1 NC_010501.1 KEGG: pen:PSEEN0278 hypothetical protein; hypothetical protein 353472 6109115 PputW619_0335 Pseudomonas putida W619 hypothetical protein YP_001747210.1 352417 D 390235 CDS YP_001747211.1 170719523 6109116 complement(353854..355695) 1 NC_010501.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 355695 6109116 PputW619_0336 Pseudomonas putida W619 dihydroxy-acid dehydratase YP_001747211.1 353854 R 390235 CDS YP_001747212.1 170719524 6109117 356175..357230 1 NC_010501.1 PFAM: CBS domain containing protein; MgtE integral membrane region; KEGG: noc:Noc_1785 divalent cation transporter; MgtE integral membrane protein 357230 6109117 PputW619_0337 Pseudomonas putida W619 MgtE integral membrane protein YP_001747212.1 356175 D 390235 CDS YP_001747213.1 170719525 6109118 complement(357270..358466) 1 NC_010501.1 KEGG: pen:PSEEN0284 hypothetical protein; hypothetical protein 358466 6109118 PputW619_0338 Pseudomonas putida W619 hypothetical protein YP_001747213.1 357270 R 390235 CDS YP_001747214.1 170719526 6109119 358622..359494 1 NC_010501.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0286 hypothetical protein; putative signal transduction protein 359494 6109119 PputW619_0339 Pseudomonas putida W619 putative signal transduction protein YP_001747214.1 358622 D 390235 CDS YP_001747215.1 170719527 6109120 359498..360310 1 NC_010501.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 360310 6109120 PputW619_0340 Pseudomonas putida W619 formamidopyrimidine-DNA glycosylase YP_001747215.1 359498 D 390235 CDS YP_001747216.1 170719528 6109121 complement(360369..360620) 1 NC_010501.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0289 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin 360620 6109121 PputW619_0341 Pseudomonas putida W619 4Fe-4S ferredoxin YP_001747216.1 360369 R 390235 CDS YP_001747217.1 170719529 6109122 complement(360728..361207) 1 NC_010501.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 361207 coaD 6109122 coaD Pseudomonas putida W619 phosphopantetheine adenylyltransferase YP_001747217.1 360728 R 390235 CDS YP_001747218.1 170719530 6109123 complement(361319..362917) 1 NC_010501.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0291 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 362917 6109123 PputW619_0343 Pseudomonas putida W619 glucose-methanol-choline oxidoreductase YP_001747218.1 361319 R 390235 CDS YP_001747219.1 170719531 6109124 complement(362939..363424) 1 NC_010501.1 KEGG: pen:PSEEN0292 hypothetical protein; hypothetical protein 363424 6109124 PputW619_0344 Pseudomonas putida W619 hypothetical protein YP_001747219.1 362939 R 390235 CDS YP_001747220.1 170719532 6109125 complement(363435..364877) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0293 coniferyl aldehyde dehydrogenase (CALDH); aldehyde dehydrogenase 364877 6109125 PputW619_0345 Pseudomonas putida W619 aldehyde dehydrogenase YP_001747220.1 363435 R 390235 CDS YP_001747221.1 170719533 6109126 365017..365682 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN0294 transcriptional regulator, TetR family; TetR family transcriptional regulator 365682 6109126 PputW619_0346 Pseudomonas putida W619 TetR family transcriptional regulator YP_001747221.1 365017 D 390235 CDS YP_001747222.1 170719534 6109127 365718..366572 1 NC_010501.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0295 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 366572 6109127 PputW619_0347 Pseudomonas putida W619 rhodanese domain-containing protein YP_001747222.1 365718 D 390235 CDS YP_001747223.1 170719535 6109128 complement(366582..367574) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN0296 hydrolase, alpha/beta superfamily; alpha/beta hydrolase fold family protein 367574 6109128 PputW619_0348 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747223.1 366582 R 390235 CDS YP_001747224.1 170719536 6109129 complement(367646..369040) 1 NC_010501.1 PFAM: peptidase M16 domain protein; KEGG: psa:PST_3994 predicted Zn-dependent peptidase; peptidase M16 domain-containing protein 369040 6109129 PputW619_0349 Pseudomonas putida W619 peptidase M16 domain-containing protein YP_001747224.1 367646 R 390235 CDS YP_001747225.1 170719537 6109130 complement(369037..370380) 1 NC_010501.1 PFAM: peptidase M16 domain protein; KEGG: pmy:Pmen_4176 peptidase M16 domain protein; peptidase M16 domain-containing protein 370380 6109130 PputW619_0350 Pseudomonas putida W619 peptidase M16 domain-containing protein YP_001747225.1 369037 R 390235 CDS YP_001747226.1 170719538 6109131 complement(370466..371068) 1 NC_010501.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0297 methyltransferase; methyltransferase 371068 6109131 PputW619_0351 Pseudomonas putida W619 methyltransferase YP_001747226.1 370466 R 390235 CDS YP_001747227.1 170719539 6109132 complement(371068..372552) 1 NC_010501.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0298 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 372552 6109132 PputW619_0352 Pseudomonas putida W619 peptidase M16 domain-containing protein YP_001747227.1 371068 R 390235 CDS YP_001747228.1 170719540 6109133 complement(372545..373900) 1 NC_010501.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0299 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein 373900 6109133 PputW619_0353 Pseudomonas putida W619 peptidase M16 domain-containing protein YP_001747228.1 372545 R 390235 CDS YP_001747229.1 170719541 6109134 374133..375677 1 NC_010501.1 KEGG: pen:PSEEN0300 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 375677 6109134 PputW619_0354 Pseudomonas putida W619 signal recognition particle-docking protein FtsY YP_001747229.1 374133 D 390235 CDS YP_001747230.1 170719542 6109135 375674..376345 1 NC_010501.1 KEGG: pen:PSEEN0301 cell division ATP binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 376345 6109135 PputW619_0355 Pseudomonas putida W619 cell division ATP-binding protein FtsE YP_001747230.1 375674 D 390235 CDS YP_001747231.1 170719543 6109136 376342..377367 1 NC_010501.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0302 cell division protein FtsX; hypothetical protein 377367 6109136 PputW619_0356 Pseudomonas putida W619 hypothetical protein YP_001747231.1 376342 D 390235 CDS YP_001747232.1 170719544 6109137 377479..378333 1 NC_010501.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 378333 6109137 PputW619_0357 Pseudomonas putida W619 RNA polymerase factor sigma-32 YP_001747232.1 377479 D 390235 CDS YP_001747233.1 170719545 6109138 complement(378446..379156) 1 NC_010501.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 379156 mtgA 6109138 mtgA Pseudomonas putida W619 monofunctional biosynthetic peptidoglycan transglycosylase YP_001747233.1 378446 R 390235 CDS YP_001747234.1 170719546 6109139 379221..379592 1 NC_010501.1 PFAM: protein of unknown function DUF423; KEGG: pen:PSEEN0305 hypothetical protein; hypothetical protein 379592 6109139 PputW619_0359 Pseudomonas putida W619 hypothetical protein YP_001747234.1 379221 D 390235 CDS YP_001747235.1 170719547 6109140 379696..379896 1 NC_010501.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 379896 6109140 PputW619_0360 Pseudomonas putida W619 sulfur carrier protein ThiS YP_001747235.1 379696 D 390235 CDS YP_001747236.1 170719548 6109141 379951..380745 1 NC_010501.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 380745 thiG 6109141 thiG Pseudomonas putida W619 thiazole synthase YP_001747236.1 379951 D 390235 CDS YP_001747237.1 170719549 6109142 380755..381477 1 NC_010501.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 381477 trmB 6109142 trmB Pseudomonas putida W619 tRNA (guanine-N(7)-)-methyltransferase YP_001747237.1 380755 D 390235 CDS YP_001747238.1 170719550 6109143 complement(381647..381973) 1 NC_010501.1 KEGG: pen:PSEEN0310 hypothetical protein; hypothetical protein 381973 6109143 PputW619_0363 Pseudomonas putida W619 hypothetical protein YP_001747238.1 381647 R 390235 CDS YP_001747239.1 170719551 6109144 complement(381983..383170) 1 NC_010501.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 383170 6109144 PputW619_0364 Pseudomonas putida W619 coproporphyrinogen III oxidase YP_001747239.1 381983 R 390235 CDS YP_001747240.1 170719552 6109145 complement(383167..383763) 1 NC_010501.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 383763 6109145 PputW619_0365 Pseudomonas putida W619 putative deoxyribonucleotide triphosphate pyrophosphatase YP_001747240.1 383167 R 390235 CDS YP_001747241.1 170719553 6109146 complement(383760..384194) 1 NC_010501.1 KEGG: pen:PSEEN0313 hypothetical protein; hypothetical protein 384194 6109146 PputW619_0366 Pseudomonas putida W619 hypothetical protein YP_001747241.1 383760 R 390235 CDS YP_001747242.1 170719554 6109147 complement(384217..384837) 1 NC_010501.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0314 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW 384837 6109147 PputW619_0367 Pseudomonas putida W619 methionine biosynthesis protein MetW YP_001747242.1 384217 R 390235 CDS YP_001747243.1 170719555 6109148 complement(384845..385984) 1 NC_010501.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 385984 metX 6109148 metX Pseudomonas putida W619 homoserine O-acetyltransferase YP_001747243.1 384845 R 390235 CDS YP_001747244.1 170719556 6109149 complement(386073..386663) 1 NC_010501.1 PFAM: protein of unknown function YGGT; KEGG: pen:PSEEN0316 hypothetical protein; hypothetical protein 386663 6109149 PputW619_0369 Pseudomonas putida W619 hypothetical protein YP_001747244.1 386073 R 390235 CDS YP_001747245.1 170719557 6109150 complement(386674..387492) 1 NC_010501.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 387492 6109150 PputW619_0370 Pseudomonas putida W619 pyrroline-5-carboxylate reductase YP_001747245.1 386674 R 390235 CDS YP_001747246.1 170719558 6109151 complement(387531..388217) 1 NC_010501.1 PFAM: alanine racemase domain protein; KEGG: pen:PSEEN0318 hypothetical protein; alanine racemase domain-containing protein 388217 6109151 PputW619_0371 Pseudomonas putida W619 alanine racemase domain-containing protein YP_001747246.1 387531 R 390235 CDS YP_001747247.1 170719559 6109152 388283..389281 1 NC_010501.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pen:PSEEN0319 type IV pili twitching motility protein PilT; twitching motility protein 389281 6109152 PputW619_0372 Pseudomonas putida W619 twitching motility protein YP_001747247.1 388283 D 390235 CDS YP_001747248.1 170719560 6109153 complement(389318..389944) 1 NC_010501.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN0320 hypothetical protein; NLP/P60 protein 389944 6109153 PputW619_0373 Pseudomonas putida W619 NLP/P60 protein YP_001747248.1 389318 R 390235 CDS YP_001747249.1 170719561 6109154 390121..390540 1 NC_010501.1 PFAM: TM2 domain containing protein?; KEGG: pen:PSEEN0321 hypothetical protein; TM2 domain-containing protein 390540 6109154 PputW619_0374 Pseudomonas putida W619 TM2 domain-containing protein YP_001747249.1 390121 D 390235 CDS YP_001747250.1 170719562 6109155 complement(390585..391283) 1 NC_010501.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN0322 hypothetical protein; sporulation domain-containing protein 391283 6109155 PputW619_0375 Pseudomonas putida W619 sporulation domain-containing protein YP_001747250.1 390585 R 390235 CDS YP_001747251.1 170719563 6109156 complement(391285..393021) 1 NC_010501.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 393021 argS 6109156 argS Pseudomonas putida W619 arginyl-tRNA synthetase YP_001747251.1 391285 R 390235 CDS YP_001747252.1 170719564 6109157 complement(393186..395426) 1 NC_010501.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 395426 6109157 PputW619_0377 Pseudomonas putida W619 primosome assembly protein PriA YP_001747252.1 393186 R 390235 CDS YP_001747253.1 170719565 6109158 395573..395788 1 NC_010501.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 395788 rpmE 6109158 rpmE Pseudomonas putida W619 50S ribosomal protein L31 YP_001747253.1 395573 D 390235 CDS YP_001747254.1 170719566 6109159 395791..396612 1 NC_010501.1 PFAM: nuclease (SNase domain protein); KEGG: pen:PSEEN0326 nuclease, staphylococcal nuclease homologue; nuclease 396612 6109159 PputW619_0379 Pseudomonas putida W619 nuclease YP_001747254.1 395791 D 390235 CDS YP_001747255.1 170719567 6109160 396783..398060 1 NC_010501.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase 398060 6109160 PputW619_0380 Pseudomonas putida W619 malate dehydrogenase YP_001747255.1 396783 D 390235 CDS YP_001747256.1 170719568 6109161 complement(398202..400655) 1 NC_010501.1 KEGG: pen:PSEEN0328 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein 400655 6109161 PputW619_0381 Pseudomonas putida W619 1A family penicillin-binding protein YP_001747256.1 398202 R 390235 CDS YP_001747257.1 170719569 6109162 complement(400786..402492) 1 NC_010501.1 KEGG: pau:PA14_07480 putative reverse transcriptase; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SMART: HNH nuclease; RNA-directed DNA polymerase 402492 6109162 PputW619_0382 Pseudomonas putida W619 RNA-directed DNA polymerase YP_001747257.1 400786 R 390235 CDS YP_001747258.1 170719570 6109163 403679..404527 1 NC_010501.1 KEGG: pen:PSEEN0330 type IV pili biogenesis protein PilM; type IV pili biogenesis protein PilM 404527 6109163 PputW619_0383 Pseudomonas putida W619 type IV pili biogenesis protein PilM YP_001747258.1 403679 D 390235 CDS YP_001747259.1 170719571 6109164 404527..405063 1 NC_010501.1 PFAM: Fimbrial assembly family protein; KEGG: pen:PSEEN0331 type IV pili biogenesis protein PilN; fimbrial assembly family protein 405063 6109164 PputW619_0384 Pseudomonas putida W619 fimbrial assembly family protein YP_001747259.1 404527 D 390235 CDS YP_001747260.1 170719572 6109165 405060..406076 1 NC_010501.1 KEGG: pen:PSEEN0332 type IV pili biogenesis protein PilP; type IV pili biogenesis protein PilP 406076 6109165 PputW619_0385 Pseudomonas putida W619 type IV pili biogenesis protein PilP YP_001747260.1 405060 D 390235 CDS YP_001747261.1 170719573 6109166 406000..407268 1 NC_010501.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: pen:PSEEN0333 type IV pili biogenesis protein PilQ; type IV pilus secretin PilQ 407268 6109166 PputW619_0386 Pseudomonas putida W619 type IV pilus secretin PilQ YP_001747261.1 406000 D 390235 CDS YP_001747262.1 170719574 6109167 407300..407791 1 NC_010501.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 407791 aroK 6109167 aroK Pseudomonas putida W619 shikimate kinase YP_001747262.1 407300 D 390235 CDS YP_001747263.1 170719575 6109168 407886..408983 1 NC_010501.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 408983 aroB 6109168 aroB Pseudomonas putida W619 3-dehydroquinate synthase YP_001747263.1 407886 D 390235 CDS YP_001747264.1 170719576 6109169 408999..410579 1 NC_010501.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN0336 hypothetical protein; sporulation domain-containing protein 410579 6109169 PputW619_0389 Pseudomonas putida W619 sporulation domain-containing protein YP_001747264.1 408999 D 390235 CDS YP_001747265.1 170719577 6109170 410953..415398 1 NC_010501.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 415398 gltB 6109170 gltB Pseudomonas putida W619 glutamate synthase subunit alpha YP_001747265.1 410953 D 390235 CDS YP_001747266.1 170719578 6109171 415522..416940 1 NC_010501.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 416940 gltD 6109171 gltD Pseudomonas putida W619 glutamate synthase subunit beta YP_001747266.1 415522 D 390235 CDS YP_001747267.1 170719579 6109300 417092..418156 1 NC_010501.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 418156 hemE 6109300 hemE Pseudomonas putida W619 uroporphyrinogen decarboxylase YP_001747267.1 417092 D 390235 CDS YP_001747268.1 170719580 6109301 418316..418663 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0340 hypothetical protein; hypothetical protein 418663 6109301 PputW619_0393 Pseudomonas putida W619 hypothetical protein YP_001747268.1 418316 D 390235 CDS YP_001747269.1 170719581 6109302 complement(418780..420024) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0341 transporter, MFS superfamily; major facilitator transporter 420024 6109302 PputW619_0394 Pseudomonas putida W619 major facilitator transporter YP_001747269.1 418780 R 390235 CDS YP_001747270.1 170719582 6109303 420133..421032 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0342 transcriptional regulator, LysR family; LysR family transcriptional regulator 421032 6109303 PputW619_0395 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747270.1 420133 D 390235 CDS YP_001747271.1 170719583 6109304 421123..421896 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase 421896 6109304 PputW619_0396 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001747271.1 421123 D 390235 CDS YP_001747272.1 170719584 6109305 complement(421893..422327) 1 NC_010501.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0368 thioredoxin; thioredoxin 422327 6109305 PputW619_0397 Pseudomonas putida W619 thioredoxin YP_001747272.1 421893 R 390235 CDS YP_001747273.1 170719585 6109306 complement(422464..423924) 1 NC_010501.1 PFAM: protein of unknown function UPF0061; KEGG: pen:PSEEN0369 hypothetical protein; hypothetical protein 423924 6109306 PputW619_0398 Pseudomonas putida W619 hypothetical protein YP_001747273.1 422464 R 390235 CDS YP_001747274.1 170719586 6109307 complement(424095..427403) 1 NC_010501.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 427403 6109307 PputW619_0399 Pseudomonas putida W619 potassium efflux protein KefA YP_001747274.1 424095 R 390235 CDS YP_001747275.1 170719587 6109308 complement(427439..429181) 1 NC_010501.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 429181 6109308 PputW619_0400 Pseudomonas putida W619 potassium/proton antiporter YP_001747275.1 427439 R 390235 CDS YP_001747276.1 170719588 6109309 complement(429368..431059) 1 NC_010501.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 431059 6109309 PputW619_0401 Pseudomonas putida W619 choline dehydrogenase YP_001747276.1 429368 R 390235 CDS YP_001747277.1 170719589 6109310 complement(431220..432692) 1 NC_010501.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 432692 6109310 PputW619_0402 Pseudomonas putida W619 betaine aldehyde dehydrogenase YP_001747277.1 431220 R 390235 CDS YP_001747278.1 170719590 6109311 complement(432731..433387) 1 NC_010501.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 433387 6109311 PputW619_0403 Pseudomonas putida W619 transcriptional regulator BetI YP_001747278.1 432731 R 390235 CDS YP_001747279.1 170719591 6109312 433864..435867 1 NC_010501.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0375 choline transporter BetT; choline/carnitine/betaine transporter 435867 6109312 PputW619_0404 Pseudomonas putida W619 choline/carnitine/betaine transporter YP_001747279.1 433864 D 390235 CDS YP_001747280.1 170719592 6109313 435987..440654 1 NC_010501.1 KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein 440654 6109313 PputW619_0405 Pseudomonas putida W619 hypothetical protein YP_001747280.1 435987 D 390235 CDS YP_001747281.1 170719593 6109314 complement(440660..441439) 1 NC_010501.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pen:PSEEN0377 hypothetical protein; hypothetical protein 441439 6109314 PputW619_0406 Pseudomonas putida W619 hypothetical protein YP_001747281.1 440660 R 390235 CDS YP_001747282.1 170719594 6109315 complement(441436..442749) 1 NC_010501.1 KEGG: pen:PSEEN0378 carboxy-terminal processing protease precursor; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 442749 6109315 PputW619_0407 Pseudomonas putida W619 carboxyl-terminal protease YP_001747282.1 441436 R 390235 CDS YP_001747283.1 170719595 6109316 complement(442842..444128) 1 NC_010501.1 PFAM: peptidase M23B; KEGG: pen:PSEEN0379 metalloendopeptidase, M23/M37 family; peptidase M23B 444128 6109316 PputW619_0408 Pseudomonas putida W619 peptidase M23B YP_001747283.1 442842 R 390235 CDS YP_001747284.1 170719596 6109317 complement(444291..445826) 1 NC_010501.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 445826 6109317 PputW619_0409 Pseudomonas putida W619 phosphoglyceromutase YP_001747284.1 444291 R 390235 CDS YP_001747285.1 170719597 6109318 446033..446446 1 NC_010501.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0381 hypothetical protein; rhodanese domain-containing protein 446446 6109318 PputW619_0410 Pseudomonas putida W619 rhodanese domain-containing protein YP_001747285.1 446033 D 390235 CDS YP_001747286.1 170719598 6109319 446448..446702 1 NC_010501.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pen:PSEEN0382 glutaredoxin; glutaredoxin 3 446702 6109319 PputW619_0411 Pseudomonas putida W619 glutaredoxin 3 YP_001747286.1 446448 D 390235 CDS YP_001747287.1 170719599 6109320 446742..447227 1 NC_010501.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 447227 6109320 PputW619_0412 Pseudomonas putida W619 preprotein translocase subunit SecB YP_001747287.1 446742 D 390235 CDS YP_001747288.1 170719600 6109321 complement(447298..447759) 1 NC_010501.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN0384 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase 447759 6109321 PputW619_0413 Pseudomonas putida W619 RNA methyltransferase YP_001747288.1 447298 R 390235 CDS YP_001747289.1 170719601 6109322 447758..448195 1 NC_010501.1 KEGG: pen:PSEEN0385 hypothetical protein; hypothetical protein 448195 6109322 PputW619_0414 Pseudomonas putida W619 hypothetical protein YP_001747289.1 447758 D 390235 CDS YP_001747290.1 170719602 6109323 complement(448554..449990) 1 NC_010501.1 KEGG: pen:PSEEN0386 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 449990 6109323 PputW619_0415 Pseudomonas putida W619 nitrogen metabolism transcriptional regulator NtrC YP_001747290.1 448554 R 390235 CDS YP_001747291.1 170719603 6109324 complement(449987..451072) 1 NC_010501.1 KEGG: pen:PSEEN0387 sensory box histidine kinase NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 451072 6109324 PputW619_0416 Pseudomonas putida W619 signal transduction histidine kinase, nitrogen specific, NtrB YP_001747291.1 449987 R 390235 CDS YP_001747292.1 170719604 6109326 complement(451615..453021) 1 NC_010501.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: pfl:PFL_0386 glutamine synthetase, type I; glutamine synthetase, type I 453021 6109326 PputW619_0418 Pseudomonas putida W619 glutamine synthetase, type I YP_001747292.1 451615 R 390235 CDS YP_001747293.1 170719605 6109327 453493..454947 1 NC_010501.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 454947 6109327 PputW619_0419 Pseudomonas putida W619 thiamine biosynthesis protein ThiI YP_001747293.1 453493 D 390235 CDS YP_001747294.1 170719606 6109328 455074..456894 1 NC_010501.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pen:PSEEN0392 regulatory protein TypA; GTP-binding protein TypA 456894 6109328 PputW619_0420 Pseudomonas putida W619 GTP-binding protein TypA YP_001747294.1 455074 D 390235 CDS YP_001747295.1 170719607 6109329 complement(457041..457445) 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5108 hypothetical protein; hypothetical protein 457445 6109329 PputW619_0421 Pseudomonas putida W619 hypothetical protein YP_001747295.1 457041 R 390235 CDS YP_001747296.1 170719608 6109330 457632..460082 1 NC_010501.1 KEGG: pen:PSEEN5107 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 460082 6109330 PputW619_0422 Pseudomonas putida W619 glycogen/starch/alpha-glucan phosphorylase YP_001747296.1 457632 D 390235 CDS YP_001747297.1 170719609 6109331 460248..461258 1 NC_010501.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 461258 6109331 PputW619_0423 Pseudomonas putida W619 fructose-1,6-bisphosphatase YP_001747297.1 460248 D 390235 CDS YP_001747298.1 170719610 6109332 461262..461858 1 NC_010501.1 PFAM: protein of unknown function DUF924; KEGG: pen:PSEEN5105 hypothetical protein; hypothetical protein 461858 6109332 PputW619_0424 Pseudomonas putida W619 hypothetical protein YP_001747298.1 461262 D 390235 CDS YP_001747299.1 170719611 6109333 complement(461894..463786) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5104 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 463786 6109333 PputW619_0425 Pseudomonas putida W619 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001747299.1 461894 R 390235 CDS YP_001747300.1 170719612 6109334 464009..464263 1 NC_010501.1 KEGG: pen:PSEEN5103 lipoprotein; lipoprotein 464263 6109334 PputW619_0426 Pseudomonas putida W619 lipoprotein YP_001747300.1 464009 D 390235 CDS YP_001747301.1 170719613 6109335 464260..464832 1 NC_010501.1 PFAM: Lipocalin family protein; KEGG: pen:PSEEN5102 outer membrane lipoprotein Blc; lipocalin family protein 464832 6109335 PputW619_0427 Pseudomonas putida W619 lipocalin family protein YP_001747301.1 464260 D 390235 CDS YP_001747302.1 170719614 6109336 complement(464866..466230) 1 NC_010501.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 466230 6109336 PputW619_0428 Pseudomonas putida W619 N-formimino-L-glutamate deiminase YP_001747302.1 464866 R 390235 CDS YP_001747303.1 170719615 6109337 466338..467084 1 NC_010501.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN5099 histidine utilization repressor; histidine utilization repressor 467084 6109337 PputW619_0429 Pseudomonas putida W619 histidine utilization repressor YP_001747303.1 466338 D 390235 CDS YP_001747304.1 170719616 6109338 467081..467653 1 NC_010501.1 PFAM: protein of unknown function DUF886; KEGG: pen:PSEEN5098 hypothetical protein; hypothetical protein 467653 6109338 PputW619_0430 Pseudomonas putida W619 hypothetical protein YP_001747304.1 467081 D 390235 CDS YP_001747305.1 170719617 6109339 467911..469584 1 NC_010501.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 469584 6109339 PputW619_0431 Pseudomonas putida W619 urocanate hydratase YP_001747305.1 467911 D 390235 CDS YP_001747306.1 170719618 6109340 469654..471186 1 NC_010501.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 471186 6109340 PputW619_0432 Pseudomonas putida W619 histidine ammonia-lyase YP_001747306.1 469654 D 390235 CDS YP_001747307.1 170719619 6109341 471252..472655 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5095 amino acid transporter; amino acid permease-associated protein 472655 6109341 PputW619_0433 Pseudomonas putida W619 amino acid permease-associated protein YP_001747307.1 471252 D 390235 CDS YP_001747308.1 170719620 6109342 472671..473876 1 NC_010501.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 473876 6109342 PputW619_0434 Pseudomonas putida W619 imidazolonepropionase YP_001747308.1 472671 D 390235 CDS YP_001747309.1 170719621 6109343 473887..474690 1 NC_010501.1 PFAM: N-formylglutamate amidohydrolase; KEGG: pen:PSEEN5093 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 474690 6109343 PputW619_0435 Pseudomonas putida W619 N-formylglutamate amidohydrolase YP_001747309.1 473887 D 390235 CDS YP_001747310.1 170719622 6109344 complement(474745..480288) 1 NC_010501.1 PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: psb:Psyr_1302 leucine-rich repeat; hypothetical protein 480288 6109344 PputW619_0436 Pseudomonas putida W619 hypothetical protein YP_001747310.1 474745 R 390235 CDS YP_001747311.1 170719623 6109345 480482..481453 1 NC_010501.1 KEGG: pen:PSEEN5092 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 481453 6109345 PputW619_0437 Pseudomonas putida W619 proline iminopeptidase YP_001747311.1 480482 D 390235 CDS YP_001747312.1 170719624 6109346 481450..481887 1 NC_010501.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 481887 6109346 PputW619_0438 Pseudomonas putida W619 D-tyrosyl-tRNA(Tyr) deacylase YP_001747312.1 481450 D 390235 CDS YP_001747313.1 170719625 6109347 482150..483889 1 NC_010501.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 483889 mdoG 6109347 mdoG Pseudomonas putida W619 glucan biosynthesis protein G YP_001747313.1 482150 D 390235 CDS YP_001747314.1 170719626 6109348 483882..486455 1 NC_010501.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 486455 6109348 PputW619_0440 Pseudomonas putida W619 glucosyltransferase MdoH YP_001747314.1 483882 D 390235 CDS YP_001747315.1 170719627 6109349 486671..487471 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN5087 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 487471 6109349 PputW619_0441 Pseudomonas putida W619 extracellular solute-binding protein YP_001747315.1 486671 D 390235 CDS YP_001747316.1 170719628 6109350 487583..488545 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5086 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 488545 6109350 PputW619_0442 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001747316.1 487583 D 390235 CDS YP_001747317.1 170719629 6109351 488538..489272 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5085 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 489272 6109351 PputW619_0443 Pseudomonas putida W619 ABC transporter-like protein YP_001747317.1 488538 D 390235 CDS YP_001747318.1 170719630 6109352 complement(489390..491333) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5084 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 491333 6109352 PputW619_0444 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001747318.1 489390 R 390235 CDS YP_001747319.1 170719631 6109353 complement(491516..493432) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5082 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 493432 6109353 PputW619_0445 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001747319.1 491516 R 390235 CDS YP_001747320.1 170719632 6109354 complement(493533..494240) 1 NC_010501.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 494240 6109354 PputW619_0446 Pseudomonas putida W619 16S ribosomal RNA methyltransferase RsmE YP_001747320.1 493533 R 390235 CDS YP_001747321.1 170719633 6109355 complement(494237..495028) 1 NC_010501.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pen:PSEEN5080 twin aqrginine translocase protein subunit C; Sec-independent protein translocase subunit TatC 495028 6109355 PputW619_0447 Pseudomonas putida W619 Sec-independent protein translocase subunit TatC YP_001747321.1 494237 R 390235 CDS YP_001747322.1 170719634 6109356 complement(495025..495393) 1 NC_010501.1 Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase 495393 tatB 6109356 tatB Pseudomonas putida W619 sec-independent translocase YP_001747322.1 495025 R 390235 CDS YP_001747323.1 170719635 6109357 complement(495397..495669) 1 NC_010501.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 495669 tatA 6109357 tatA Pseudomonas putida W619 twin arginine translocase protein A YP_001747323.1 495397 R 390235 CDS YP_001747324.1 170719636 6109358 complement(495695..496030) 1 NC_010501.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 496030 hisE 6109358 hisE Pseudomonas putida W619 phosphoribosyl-ATP pyrophosphatase YP_001747324.1 495695 R 390235 CDS YP_001747325.1 170719637 6109359 complement(496032..496424) 1 NC_010501.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 496424 hisI 6109359 hisI Pseudomonas putida W619 phosphoribosyl-AMP cyclohydrolase YP_001747325.1 496032 R 390235 CDS YP_001747326.1 170719638 6109360 complement(496498..498117) 1 NC_010501.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: pen:PSEEN5075 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; 2-polyprenylphenol 6-hydroxylase 498117 6109360 PputW619_0452 Pseudomonas putida W619 2-polyprenylphenol 6-hydroxylase YP_001747326.1 496498 R 390235 CDS YP_001747327.1 170719639 6109361 complement(498114..498737) 1 NC_010501.1 PFAM: Sterol-binding domain protein; KEGG: pen:PSEEN5074 hypothetical protein; sterol-binding domain-containing protein 498737 6109361 PputW619_0453 Pseudomonas putida W619 sterol-binding domain-containing protein YP_001747327.1 498114 R 390235 CDS YP_001747328.1 170719640 6109362 complement(498737..499507) 1 NC_010501.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 499507 ubiE 6109362 ubiE Pseudomonas putida W619 ubiquinone/menaquinone biosynthesis methyltransferase YP_001747328.1 498737 R 390235 CDS YP_001747329.1 170719641 6109363 499632..499907 1 NC_010501.1 TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: pen:PSEEN5072 hypothetical protein; polyhydroxyalkanoic acid system protein 499907 6109363 PputW619_0455 Pseudomonas putida W619 polyhydroxyalkanoic acid system protein YP_001747329.1 499632 D 390235 CDS YP_001747330.1 170719642 6109364 500087..500506 1 NC_010501.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5071 polyhydroxyalkanoate granule-associated protein GA1; poly(hydroxyalkanoate) granule-associated protein 500506 6109364 PputW619_0456 Pseudomonas putida W619 poly(hydroxyalkanoate) granule-associated protein YP_001747330.1 500087 D 390235 CDS YP_001747331.1 170719643 6109365 500517..501281 1 NC_010501.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5070 polyhydroxyalkanoate synthesis protein PhaF; poly(hydroxyalkanoate) granule-associated protein 501281 6109365 PputW619_0457 Pseudomonas putida W619 poly(hydroxyalkanoate) granule-associated protein YP_001747331.1 500517 D 390235 CDS YP_001747332.1 170719644 6109366 complement(501408..502022) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN5069 transcriptional regulator, TetR family; TetR family transcriptional regulator 502022 6109366 PputW619_0458 Pseudomonas putida W619 TetR family transcriptional regulator YP_001747332.1 501408 R 390235 CDS YP_001747333.1 170719645 6109367 complement(502036..503718) 1 NC_010501.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5068 poly(3-hydroxyalkanoate) polymerase 2; class II poly(R)-hydroxyalkanoic acid synthase 503718 6109367 PputW619_0459 Pseudomonas putida W619 class II poly(R)-hydroxyalkanoic acid synthase YP_001747333.1 502036 R 390235 CDS YP_001747334.1 170719646 6109368 complement(503773..504630) 1 NC_010501.1 TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5067 poly(3-hydroxyalkanoate) depolymerase; poly(3-hydroxyalkanoate) depolymerase 504630 6109368 PputW619_0460 Pseudomonas putida W619 poly(3-hydroxyalkanoate) depolymerase YP_001747334.1 503773 R 390235 CDS YP_001747335.1 170719647 6109369 complement(504688..506367) 1 NC_010501.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5066 poly(3-hydroxyalkanoate) polymerase 1; class II poly(R)-hydroxyalkanoic acid synthase 506367 6109369 PputW619_0461 Pseudomonas putida W619 class II poly(R)-hydroxyalkanoic acid synthase YP_001747335.1 504688 R 390235 CDS YP_001747336.1 170719648 6109370 complement(506720..507097) 1 NC_010501.1 PFAM: protein of unknown function DUF971; KEGG: pen:PSEEN5065 hypothetical protein; hypothetical protein 507097 6109370 PputW619_0462 Pseudomonas putida W619 hypothetical protein YP_001747336.1 506720 R 390235 CDS YP_001747337.1 170719649 6109371 complement(507259..508602) 1 NC_010501.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 508602 hslU 6109371 hslU Pseudomonas putida W619 ATP-dependent protease ATP-binding subunit HslU YP_001747337.1 507259 R 390235 CDS YP_001747338.2 229597233 6109372 complement(508679..509209) 1 NC_010501.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 509209 6109372 PputW619_0464 Pseudomonas putida W619 ATP-dependent protease peptidase subunit YP_001747338.2 508679 R 390235 CDS YP_001747339.1 170719651 6109373 complement(509463..510734) 1 NC_010501.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 510734 pyrC 6109373 pyrC Pseudomonas putida W619 dihydroorotase YP_001747339.1 509463 R 390235 CDS YP_001747340.1 170719652 6109374 complement(510731..511735) 1 NC_010501.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 511735 pyrB 6109374 pyrB Pseudomonas putida W619 aspartate carbamoyltransferase catalytic subunit YP_001747340.1 510731 R 390235 CDS YP_001747341.1 170719653 6109375 complement(511749..512267) 1 NC_010501.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 512267 6109375 PputW619_0467 Pseudomonas putida W619 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001747341.1 511749 R 390235 CDS YP_001747342.1 170719654 6109376 complement(512317..512742) 1 NC_010501.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 512742 6109376 PputW619_0468 Pseudomonas putida W619 Holliday junction resolvase-like protein YP_001747342.1 512317 R 390235 CDS YP_001747343.1 170719655 6109377 complement(512742..513311) 1 NC_010501.1 PFAM: protein of unknown function DUF179; KEGG: pen:PSEEN5058 hypothetical protein; hypothetical protein 513311 6109377 PputW619_0469 Pseudomonas putida W619 hypothetical protein YP_001747343.1 512742 R 390235 CDS YP_001747344.1 170719656 6109378 complement(513431..514333) 1 NC_010501.1 TIGRFAM: TonB family protein; KEGG: pen:PSEEN5057 hypothetical protein; TonB family protein 514333 6109378 PputW619_0470 Pseudomonas putida W619 TonB family protein YP_001747344.1 513431 R 390235 CDS YP_001747345.1 170719657 6109379 complement(514479..515432) 1 NC_010501.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 515432 6109379 PputW619_0471 Pseudomonas putida W619 glutathione synthetase YP_001747345.1 514479 R 390235 CDS YP_001747346.1 170719658 6109380 515676..516077 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5055 type IV pili response regulator PilG; response regulator receiver protein 516077 6109380 PputW619_0472 Pseudomonas putida W619 response regulator receiver protein YP_001747346.1 515676 D 390235 CDS YP_001747347.1 170719659 6109381 516125..516490 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5054 type IV pili response regulator PilH; response regulator receiver protein 516490 6109381 PputW619_0473 Pseudomonas putida W619 response regulator receiver protein YP_001747347.1 516125 D 390235 CDS YP_001747348.1 170719660 6109382 516487..517041 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN5053 type IV pili signal transduction protein PilI; CheW protein 517041 6109382 PputW619_0474 Pseudomonas putida W619 CheW protein YP_001747348.1 516487 D 390235 CDS YP_001747349.1 170719661 6109383 517053..519113 1 NC_010501.1 PFAM: chemotaxis sensory transducer; KEGG: pen:PSEEN5052 type IV pili methyl-accepting chemotaxis transducer PilJ; methyl-accepting chemotaxis sensory transducer 519113 6109383 PputW619_0475 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001747349.1 517053 D 390235 CDS YP_001747350.1 170719662 6109384 519123..524012 1 NC_010501.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN5051 sensor histidine kinase/response regulator ChpA; CheA signal transduction histidine kinase 524012 6109384 PputW619_0476 Pseudomonas putida W619 CheA signal transduction histidine kinase YP_001747350.1 519123 D 390235 CDS YP_001747351.1 170719663 6109385 524005..524466 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN5050 chemotaxis protein; CheW domain-containing protein 524466 6109385 PputW619_0477 Pseudomonas putida W619 CheW domain-containing protein YP_001747351.1 524005 D 390235 CDS YP_001747352.1 170719664 6109386 524585..525202 1 NC_010501.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pen:PSEEN5049 hemolysin III; hemolysin III family channel protein 525202 6109386 PputW619_0478 Pseudomonas putida W619 hemolysin III family channel protein YP_001747352.1 524585 D 390235 CDS YP_001747353.1 170719665 6109387 complement(525199..525918) 1 NC_010501.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 525918 6109387 PputW619_0479 Pseudomonas putida W619 16S ribosomal RNA methyltransferase RsmE YP_001747353.1 525199 R 390235 CDS YP_001747354.1 170719666 6109388 complement(526090..527496) 1 NC_010501.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 527496 6109388 PputW619_0480 Pseudomonas putida W619 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001747354.1 526090 R 390235 CDS YP_001747355.1 170719667 6109389 complement(527575..528066) 1 NC_010501.1 KEGG: pen:PSEEN5046 hypothetical protein; hypothetical protein 528066 6109389 PputW619_0481 Pseudomonas putida W619 hypothetical protein YP_001747355.1 527575 R 390235 CDS YP_001747356.1 170719668 6109390 528275..529972 1 NC_010501.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN5045 flavin-containing monamine oxidase family protein; amine oxidase 529972 6109390 PputW619_0482 Pseudomonas putida W619 amine oxidase YP_001747356.1 528275 D 390235 CDS YP_001747357.1 170719669 6109391 530178..530729 1 NC_010501.1 PFAM: cytochrome B561; KEGG: pen:PSEEN5044 cytochrome, b561 family; cytochrome B561 530729 6109391 PputW619_0483 Pseudomonas putida W619 cytochrome B561 YP_001747357.1 530178 D 390235 CDS YP_001747358.1 170719670 6109392 530761..531339 1 NC_010501.1 PFAM: YceI family protein; KEGG: pen:PSEEN5043 hypothetical protein; hypothetical protein 531339 6109392 PputW619_0484 Pseudomonas putida W619 hypothetical protein YP_001747358.1 530761 D 390235 CDS YP_001747359.1 170719671 6109393 complement(531400..533292) 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN5042 ATP-dependent RNA helicase RhlE, DEAD box family; DEAD/DEAH box helicase 533292 6109393 PputW619_0485 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001747359.1 531400 R 390235 CDS YP_001747360.1 170719672 6109394 complement(533509..534297) 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein; extracellular solute-binding protein 534297 6109394 PputW619_0486 Pseudomonas putida W619 extracellular solute-binding protein YP_001747360.1 533509 R 390235 CDS YP_001747361.1 170719673 6109395 complement(534374..535450) 1 NC_010501.1 KEGG: pae:PA0429 hypothetical protein; hypothetical protein 535450 6109395 PputW619_0487 Pseudomonas putida W619 hypothetical protein YP_001747361.1 534374 R 390235 CDS YP_001747362.1 170719674 6109396 complement(535545..536390) 1 NC_010501.1 KEGG: pen:PSEEN5038 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 536390 6109396 PputW619_0488 Pseudomonas putida W619 5,10-methylenetetrahydrofolate reductase YP_001747362.1 535545 R 390235 CDS YP_001747363.1 170719675 6109397 complement(536557..537966) 1 NC_010501.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 537966 6109397 PputW619_0489 Pseudomonas putida W619 S-adenosyl-L-homocysteine hydrolase YP_001747363.1 536557 R 390235 CDS YP_001747364.1 170719676 6109398 538263..538664 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5034 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 538664 6109398 PputW619_0490 Pseudomonas putida W619 thioesterase superfamily protein YP_001747364.1 538263 D 390235 CDS YP_001747365.1 170719677 6109399 complement(538754..539989) 1 NC_010501.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5033 Na+/H+ antiporter; sodium/hydrogen exchanger 539989 6109399 PputW619_0491 Pseudomonas putida W619 sodium/hydrogen exchanger YP_001747365.1 538754 R 390235 CDS YP_001747366.1 170719678 6109400 540192..541025 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5032 hypothetical protein; hypothetical protein 541025 6109400 PputW619_0492 Pseudomonas putida W619 hypothetical protein YP_001747366.1 540192 D 390235 CDS YP_001747367.1 170719679 6109401 541051..541437 1 NC_010501.1 KEGG: pen:PSEEN5031 hypothetical protein; hypothetical protein 541437 6109401 PputW619_0493 Pseudomonas putida W619 hypothetical protein YP_001747367.1 541051 D 390235 CDS YP_001747368.1 170719680 6109402 complement(541487..542638) 1 NC_010501.1 PFAM: MltA domain protein; 3D domain protein; KEGG: pen:PSEEN5030 outer membrane-bound lytic murein transglycolase A; MltA domain-containing protein 542638 6109402 PputW619_0494 Pseudomonas putida W619 MltA domain-containing protein YP_001747368.1 541487 R 390235 CDS YP_001747369.1 170719681 6109403 542754..543200 1 NC_010501.1 PFAM: cytochrome c prime; KEGG: pen:PSEEN5029 cytochrome c'; cytochrome c prime 543200 6109403 PputW619_0495 Pseudomonas putida W619 cytochrome c prime YP_001747369.1 542754 D 390235 CDS YP_001747370.1 170719682 6109404 complement(543257..543652) 1 NC_010501.1 PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein 543652 6109404 PputW619_0496 Pseudomonas putida W619 hypothetical protein YP_001747370.1 543257 R 390235 CDS YP_001747371.1 170719683 6109405 complement(543780..544175) 1 NC_010501.1 PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein 544175 6109405 PputW619_0497 Pseudomonas putida W619 hypothetical protein YP_001747371.1 543780 R 390235 CDS YP_001747372.1 170719684 6109406 complement(544308..546011) 1 NC_010501.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 546011 ligB 6109406 ligB Pseudomonas putida W619 NAD-dependent DNA ligase LigB YP_001747372.1 544308 R 390235 CDS YP_001747373.1 170719685 6109407 complement(546178..547368) 1 NC_010501.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 547368 6109407 PputW619_0499 Pseudomonas putida W619 S-adenosylmethionine synthetase YP_001747373.1 546178 R 390235 CDS YP_001747374.1 170719686 6109408 complement(547388..548380) 1 NC_010501.1 PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5025 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 548380 6109408 PputW619_0500 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001747374.1 547388 R 390235 CDS YP_001747375.1 170719687 6109409 548607..550604 1 NC_010501.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 550604 6109409 PputW619_0501 Pseudomonas putida W619 transketolase YP_001747375.1 548607 D 390235 CDS YP_001747376.1 170719688 6109410 550761..551822 1 NC_010501.1 KEGG: pen:PSEEN5023 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 551822 6109410 PputW619_0502 Pseudomonas putida W619 D-erythrose-4-phosphate dehydrogenase YP_001747376.1 550761 D 390235 CDS YP_001747377.1 170719689 6109411 551835..552998 1 NC_010501.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 552998 pgk 6109411 pgk Pseudomonas putida W619 phosphoglycerate kinase YP_001747377.1 551835 D 390235 CDS YP_001747378.1 170719690 6109412 553031..553249 1 NC_010501.1 KEGG: pen:PSEEN5021 hypothetical protein; hypothetical protein 553249 6109412 PputW619_0504 Pseudomonas putida W619 hypothetical protein YP_001747378.1 553031 D 390235 CDS YP_001747379.1 170719691 6109413 553314..553643 1 NC_010501.1 KEGG: pen:PSEEN5020 lipoprotein; lipoprotein 553643 6109413 PputW619_0505 Pseudomonas putida W619 lipoprotein YP_001747379.1 553314 D 390235 CDS YP_001747380.1 170719692 6109414 553745..554809 1 NC_010501.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 554809 6109414 PputW619_0506 Pseudomonas putida W619 fructose-1,6-bisphosphate aldolase YP_001747380.1 553745 D 390235 CDS YP_001747381.1 170719693 6109415 555006..557126 1 NC_010501.1 KEGG: pen:PSEEN5017 sensory box protein/response regulator (hybrid); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 557126 6109415 PputW619_0507 Pseudomonas putida W619 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001747381.1 555006 D 390235 CDS YP_001747382.1 170719694 6109416 557166..557666 1 NC_010501.1 PFAM: protein of unknown function DUF45; KEGG: pen:PSEEN5016 hypothetical protein; hypothetical protein 557666 6109416 PputW619_0508 Pseudomonas putida W619 hypothetical protein YP_001747382.1 557166 D 390235 CDS YP_001747383.1 170719695 6109417 557679..557975 1 NC_010501.1 KEGG: pen:PSEEN5015 hypothetical protein; hypothetical protein 557975 6109417 PputW619_0509 Pseudomonas putida W619 hypothetical protein YP_001747383.1 557679 D 390235 CDS YP_001747384.1 170719696 6109418 558126..558863 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5011 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 558863 6109418 PputW619_0510 Pseudomonas putida W619 extracellular solute-binding protein YP_001747384.1 558126 D 390235 CDS YP_001747385.1 170719697 6109419 complement(558887..561070) 1 NC_010501.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pen:PSEEN5010 hypothetical protein; YccS/YhfK family integral membrane protein 561070 6109419 PputW619_0511 Pseudomonas putida W619 YccS/YhfK family integral membrane protein YP_001747385.1 558887 R 390235 CDS YP_001747386.1 170719698 6109420 complement(561154..562386) 1 NC_010501.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5009 hypothetical protein; hypothetical protein 562386 6109420 PputW619_0512 Pseudomonas putida W619 hypothetical protein YP_001747386.1 561154 R 390235 CDS YP_001747387.1 170719699 6109421 complement(562469..563854) 1 NC_010501.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 563854 6109421 PputW619_0513 Pseudomonas putida W619 ATP-dependent RNA helicase DbpA YP_001747387.1 562469 R 390235 CDS YP_001747388.1 170719700 6109422 complement(563919..565346) 1 NC_010501.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5007 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 565346 6109422 PputW619_0514 Pseudomonas putida W619 EmrB/QacA family drug resistance transporter YP_001747388.1 563919 R 390235 CDS YP_001747389.1 170719701 6109423 complement(565483..566814) 1 NC_010501.1 KEGG: pen:PSEEN5006 hypothetical protein; hypothetical protein 566814 6109423 PputW619_0515 Pseudomonas putida W619 hypothetical protein YP_001747389.1 565483 R 390235 CDS YP_001747390.1 170719702 6109424 complement(566814..568256) 1 NC_010501.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN5005 peptidase, TldD/PmbA family; peptidase U62 modulator of DNA gyrase 568256 6109424 PputW619_0516 Pseudomonas putida W619 peptidase U62 modulator of DNA gyrase YP_001747390.1 566814 R 390235 CDS YP_001747391.1 170719703 6109425 complement(568287..570089) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 570089 6109425 PputW619_0517 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001747391.1 568287 R 390235 CDS YP_001747392.1 170719704 6109426 571127..571579 1 NC_010501.1 KEGG: kpn:KPN_00712 putative arginine/ornithine antiporter; hypothetical protein 571579 6109426 PputW619_0518 Pseudomonas putida W619 hypothetical protein YP_001747392.1 571127 D 390235 CDS YP_001747393.1 170719705 6109427 572230..572379 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 572379 6109427 PputW619_0519 Pseudomonas putida W619 hypothetical protein YP_001747393.1 572230 D 390235 CDS YP_001747394.1 170719706 6109428 572535..572798 1 NC_010501.1 KEGG: pen:PSEEN0872 hypothetical protein; hypothetical protein 572798 6109428 PputW619_0520 Pseudomonas putida W619 hypothetical protein YP_001747394.1 572535 D 390235 CDS YP_001747395.1 170719707 6109429 complement(572969..576922) 1 NC_010501.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 576922 putA 6109429 putA Pseudomonas putida W619 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001747395.1 572969 R 390235 CDS YP_001747396.1 170719708 6109430 577279..578757 1 NC_010501.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pen:PSEEN4998 major sodium:proline symporter (SSS family); sodium/proline symporter 578757 6109430 PputW619_0522 Pseudomonas putida W619 sodium/proline symporter YP_001747396.1 577279 D 390235 CDS YP_001747397.1 170719709 6109431 578887..579723 1 NC_010501.1 PFAM: protein of unknown function DUF519; KEGG: pen:PSEEN4997 hypothetical protein; hypothetical protein 579723 6109431 PputW619_0523 Pseudomonas putida W619 hypothetical protein YP_001747397.1 578887 D 390235 CDS YP_001747398.1 170719710 6109432 579908..581665 1 NC_010501.1 PFAM: Carbamoyltransferase; KEGG: pen:PSEEN4996 carbamoyltransferase, NodU family; carbamoyltransferase 581665 6109432 PputW619_0524 Pseudomonas putida W619 carbamoyltransferase YP_001747398.1 579908 D 390235 CDS YP_001747399.1 170719711 6109433 581649..582779 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4995 glycosyl transferase; glycosyl transferase group 1 protein 582779 6109433 PputW619_0525 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001747399.1 581649 D 390235 CDS YP_001747400.1 170719712 6109434 582779..583675 1 NC_010501.1 PFAM: Mig-14 family protein; KEGG: pen:PSEEN4994 hypothetical protein; Mig-14 family protein 583675 6109434 PputW619_0526 Pseudomonas putida W619 Mig-14 family protein YP_001747400.1 582779 D 390235 CDS YP_001747401.1 170719713 6109435 583672..585075 1 NC_010501.1 PFAM: LmbE family protein; KEGG: pen:PSEEN4993 hypothetical protein; LmbE family protein 585075 6109435 PputW619_0527 Pseudomonas putida W619 LmbE family protein YP_001747401.1 583672 D 390235 CDS YP_001747402.1 170719714 6109436 585124..586080 1 NC_010501.1 KEGG: pen:PSEEN4992 hypothetical protein; hypothetical protein 586080 6109436 PputW619_0528 Pseudomonas putida W619 hypothetical protein YP_001747402.1 585124 D 390235 CDS YP_001747403.1 170719715 6109437 586148..586921 1 NC_010501.1 KEGG: pen:PSEEN4991 hypothetical protein; hypothetical protein 586921 6109437 PputW619_0529 Pseudomonas putida W619 hypothetical protein YP_001747403.1 586148 D 390235 CDS YP_001747404.1 170719716 6109438 complement(586979..587584) 1 NC_010501.1 KEGG: pen:PSEEN4989 toluene tolerance protein Ttg8; toluene tolerance protein Ttg8 587584 6109438 PputW619_0530 Pseudomonas putida W619 toluene tolerance protein Ttg8 YP_001747404.1 586979 R 390235 CDS YP_001747405.1 170719717 6109439 587810..589621 1 NC_010501.1 KEGG: pen:PSEEN4987 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 589621 6109439 PputW619_0531 Pseudomonas putida W619 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_001747405.1 587810 D 390235 CDS YP_001747406.1 170719718 6109440 589752..591173 1 NC_010501.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 591173 6109440 PputW619_0532 Pseudomonas putida W619 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001747406.1 589752 D 390235 CDS YP_001747407.1 170719719 6109441 complement(591206..592174) 1 NC_010501.1 KEGG: pen:PSEEN4985 hypothetical protein; hypothetical protein 592174 6109441 PputW619_0533 Pseudomonas putida W619 hypothetical protein YP_001747407.1 591206 R 390235 CDS YP_001747408.1 170719720 6109442 complement(592225..593037) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN4984 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 593037 6109442 PputW619_0534 Pseudomonas putida W619 aldo/keto reductase YP_001747408.1 592225 R 390235 CDS YP_001747409.1 170719721 6109443 complement(593034..594209) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4983 oxidase, FAD-binding; FAD dependent oxidoreductase 594209 6109443 PputW619_0535 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001747409.1 593034 R 390235 CDS YP_001747410.1 170719722 6109444 complement(594286..594618) 1 NC_010501.1 PFAM: small multidrug resistance protein; KEGG: pen:PSEEN4982 multidrug efflux SMR transporter; small multidrug resistance protein 594618 6109444 PputW619_0536 Pseudomonas putida W619 small multidrug resistance protein YP_001747410.1 594286 R 390235 CDS YP_001747411.1 170719723 6109445 594705..595595 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4981 transcriptional regulator, LysR family; LysR family transcriptional regulator 595595 6109445 PputW619_0537 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747411.1 594705 D 390235 CDS YP_001747412.1 170719724 6109446 595607..596878 1 NC_010501.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 596878 6109446 PputW619_0538 Pseudomonas putida W619 3-deoxy-D-manno-octulosonic-acid transferase YP_001747412.1 595607 D 390235 CDS YP_001747413.1 170719725 6109447 complement(596964..598352) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_4913 transcriptional regulator, GntR family; transcriptional regulator 598352 6109447 PputW619_0539 Pseudomonas putida W619 transcriptional regulator YP_001747413.1 596964 R 390235 CDS YP_001747414.1 170719726 6109448 598749..599798 1 NC_010501.1 KEGG: fal:FRAAL4688 putative clavaminate synthase-like (oxidase); hypothetical protein 599798 6109448 PputW619_0540 Pseudomonas putida W619 hypothetical protein YP_001747414.1 598749 D 390235 CDS YP_001747415.1 170719727 6109449 599830..600615 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: fno:Fnod_1043 protein of unknown function DUF81; hypothetical protein 600615 6109449 PputW619_0541 Pseudomonas putida W619 hypothetical protein YP_001747415.1 599830 D 390235 CDS YP_001747416.1 170719728 6109450 600641..601402 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmu:PM0579 oxidoreductase, short chain dehydrogenase/reductase, putative; short-chain dehydrogenase/reductase SDR 601402 6109450 PputW619_0542 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001747416.1 600641 D 390235 CDS YP_001747417.1 170719729 6109451 601531..602121 1 NC_010501.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN0563 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region 602121 6109451 PputW619_0543 Pseudomonas putida W619 molybdopterin oxidoreductase Fe4S4 region YP_001747417.1 601531 D 390235 CDS YP_001747418.1 170719730 6109452 602170..604599 1 NC_010501.1 KEGG: pen:PSEEN0564 formate dehydrogenase-N major subunit, anaerobic; selenopeptide; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 604599 6109452 PputW619_0544 Pseudomonas putida W619 formate dehydrogenase subunit alpha YP_001747418.1 602170 D 390235 CDS YP_001747419.1 170719731 6109453 604599..605555 1 NC_010501.1 TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: pen:PSEEN0565 formate dehydrogenase-O, Fe-S subunit; formate dehydrogenase subunit beta 605555 6109453 PputW619_0545 Pseudomonas putida W619 formate dehydrogenase subunit beta YP_001747419.1 604599 D 390235 CDS YP_001747420.1 170719732 6109454 605552..606208 1 NC_010501.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pen:PSEEN0566 formate dehydrogenase-O, cytochrome b556 (FDO) subunit; formate dehydrogenase subunit gamma 606208 6109454 PputW619_0546 Pseudomonas putida W619 formate dehydrogenase subunit gamma YP_001747420.1 605552 D 390235 CDS YP_001747421.1 170719733 6109455 606189..607139 1 NC_010501.1 TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: pen:PSEEN0567 formate dehydrogenase formation protein; formate dehydrogenase accessory protein FdhE 607139 6109455 PputW619_0547 Pseudomonas putida W619 formate dehydrogenase accessory protein FdhE YP_001747421.1 606189 D 390235 CDS YP_001747422.1 170719734 6109456 607286..608713 1 NC_010501.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 608713 6109456 PputW619_0548 Pseudomonas putida W619 selenocysteine synthase YP_001747422.1 607286 D 390235 CDS YP_001747423.1 170719735 6109457 608710..610632 1 NC_010501.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: pen:PSEEN0569 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 610632 6109457 PputW619_0549 Pseudomonas putida W619 selenocysteine-specific translation elongation factor YP_001747423.1 608710 D 390235 CDS YP_001747424.1 170719736 6109459 complement(610744..611742) 1 NC_010501.1 PFAM: Asparaginase/glutaminase; KEGG: pen:PSEEN0570 L-asparaginase, type I; asparaginase 611742 6109459 PputW619_0550 Pseudomonas putida W619 asparaginase YP_001747424.1 610744 R 390235 CDS YP_001747425.1 170719737 6109460 complement(611806..613248) 1 NC_010501.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pen:PSEEN0571 sodium/alanine symporter; amino acid carrier protein 613248 6109460 PputW619_0551 Pseudomonas putida W619 amino acid carrier protein YP_001747425.1 611806 R 390235 CDS YP_001747426.1 170719738 6109461 613427..614236 1 NC_010501.1 KEGG: pen:PSEEN0572 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator 614236 6109461 PputW619_0552 Pseudomonas putida W619 Cro/CI family transcriptional regulator YP_001747426.1 613427 D 390235 CDS YP_001747427.1 170719739 6109462 614448..615332 1 NC_010501.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0574 dTDP-4-rhamnose reductase-related protein; dTDP-4-dehydrorhamnose reductase 615332 6109462 PputW619_0553 Pseudomonas putida W619 dTDP-4-dehydrorhamnose reductase YP_001747427.1 614448 D 390235 CDS YP_001747428.1 170719740 6109463 615325..616257 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pen:PSEEN0575 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 616257 6109463 PputW619_0554 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001747428.1 615325 D 390235 CDS YP_001747429.1 170719741 6109464 complement(616305..616748) 1 NC_010501.1 PFAM: helix-turn-helix HxlR type; KEGG: pen:PSEEN0576 hypothetical protein; HxlR family transcriptional regulator 616748 6109464 PputW619_0555 Pseudomonas putida W619 HxlR family transcriptional regulator YP_001747429.1 616305 R 390235 CDS YP_001747430.1 170719742 6109465 616853..618058 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0577 transport protein, MFS superfamily; major facilitator transporter 618058 6109465 PputW619_0556 Pseudomonas putida W619 major facilitator transporter YP_001747430.1 616853 D 390235 CDS YP_001747431.1 170719743 6109466 complement(618046..618729) 1 NC_010501.1 PFAM: OmpW family protein; KEGG: pen:PSEEN0578 outer membrane protein OprG; OmpW family protein 618729 6109466 PputW619_0557 Pseudomonas putida W619 OmpW family protein YP_001747431.1 618046 R 390235 CDS YP_001747432.1 170719744 6109467 complement(618839..619354) 1 NC_010501.1 KEGG: pen:PSEEN0579 lipoprotein; lipoprotein 619354 6109467 PputW619_0558 Pseudomonas putida W619 lipoprotein YP_001747432.1 618839 R 390235 CDS YP_001747433.1 170719745 6109468 complement(619364..620629) 1 NC_010501.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein 620629 6109468 PputW619_0559 Pseudomonas putida W619 hypothetical protein YP_001747433.1 619364 R 390235 CDS YP_001747434.1 170719746 6109469 complement(620629..621339) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein 621339 6109469 PputW619_0560 Pseudomonas putida W619 ABC transporter-like protein YP_001747434.1 620629 R 390235 CDS YP_001747435.1 170719747 6109470 complement(621340..621924) 1 NC_010501.1 KEGG: pen:PSEEN0582 hypothetical protein; hypothetical protein 621924 6109470 PputW619_0561 Pseudomonas putida W619 hypothetical protein YP_001747435.1 621340 R 390235 CDS YP_001747436.1 170719748 6109471 622058..622402 1 NC_010501.1 KEGG: pen:PSEEN0583 hypothetical protein; hypothetical protein 622402 6109471 PputW619_0562 Pseudomonas putida W619 hypothetical protein YP_001747436.1 622058 D 390235 CDS YP_001747437.1 170719749 6109472 complement(622461..623333) 1 NC_010501.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0584 thioredoxin; thioredoxin 623333 6109472 PputW619_0563 Pseudomonas putida W619 thioredoxin YP_001747437.1 622461 R 390235 CDS YP_001747438.1 170719750 6109473 complement(623365..624024) 1 NC_010501.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN0585 hypothetical protein; type 12 methyltransferase 624024 6109473 PputW619_0564 Pseudomonas putida W619 type 12 methyltransferase YP_001747438.1 623365 R 390235 CDS YP_001747439.1 170719751 6109474 complement(624025..624477) 1 NC_010501.1 KEGG: pen:PSEEN0586 hypothetical protein; hypothetical protein 624477 6109474 PputW619_0565 Pseudomonas putida W619 hypothetical protein YP_001747439.1 624025 R 390235 CDS YP_001747440.1 170719752 6109475 624584..625048 1 NC_010501.1 PFAM: ATP-cone domain protein; KEGG: pen:PSEEN0587 hypothetical protein; transcriptional regulator NrdR 625048 nrdR 6109475 nrdR Pseudomonas putida W619 transcriptional regulator NrdR YP_001747440.1 624584 D 390235 CDS YP_001747441.1 170719753 6109476 625051..626181 1 NC_010501.1 KEGG: pen:PSEEN0588 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 626181 6109476 PputW619_0567 Pseudomonas putida W619 riboflavin biosynthesis protein RibD YP_001747441.1 625051 D 390235 CDS YP_001747442.1 170719754 6109477 626224..626889 1 NC_010501.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 626889 6109477 PputW619_0568 Pseudomonas putida W619 riboflavin synthase subunit alpha YP_001747442.1 626224 D 390235 CDS YP_001747443.1 170719755 6109478 626908..627999 1 NC_010501.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 627999 6109478 PputW619_0569 Pseudomonas putida W619 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001747443.1 626908 D 390235 CDS YP_001747444.1 170719756 6109479 628055..628567 1 NC_010501.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 628567 ribH 6109479 ribH Pseudomonas putida W619 6,7-dimethyl-8-ribityllumazine synthase YP_001747444.1 628055 D 390235 CDS YP_001747445.1 170719757 6109480 628564..629064 1 NC_010501.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 629064 nusB 6109480 nusB Pseudomonas putida W619 transcription antitermination protein NusB YP_001747445.1 628564 D 390235 CDS YP_001747446.1 170719758 6109481 629083..630042 1 NC_010501.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 630042 6109481 PputW619_0572 Pseudomonas putida W619 thiamine monophosphate kinase YP_001747446.1 629083 D 390235 CDS YP_001747447.1 170719759 6109482 630039..630542 1 NC_010501.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pen:PSEEN0594 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 630542 6109482 PputW619_0573 Pseudomonas putida W619 phosphatidylglycerophosphatase A YP_001747447.1 630039 D 390235 CDS YP_001747448.1 170719760 6109483 630560..631303 1 NC_010501.1 KEGG: pen:PSEEN0595 hypothetical protein; hypothetical protein 631303 6109483 PputW619_0574 Pseudomonas putida W619 hypothetical protein YP_001747448.1 630560 D 390235 CDS YP_001747449.1 170719761 6109484 631438..632055 1 NC_010501.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 632055 ribA 6109484 ribA Pseudomonas putida W619 GTP cyclohydrolase II YP_001747449.1 631438 D 390235 CDS YP_001747450.1 170719762 6109485 632052..632471 1 NC_010501.1 KEGG: pen:PSEEN0597 hypothetical protein; hypothetical protein 632471 6109485 PputW619_0576 Pseudomonas putida W619 hypothetical protein YP_001747450.1 632052 D 390235 CDS YP_001747451.1 170719763 6109486 632471..633283 1 NC_010501.1 PFAM: periplasmic binding protein; KEGG: pen:PSEEN0598 periplasmic cobalamin-binding protein HutB; periplasmic binding protein 633283 6109486 PputW619_0577 Pseudomonas putida W619 periplasmic binding protein YP_001747451.1 632471 D 390235 CDS YP_001747452.1 170719764 6109487 complement(633261..635144) 1 NC_010501.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0599 cobalamine TonB-dependent receptor; TonB-dependent receptor plug 635144 6109487 PputW619_0578 Pseudomonas putida W619 TonB-dependent receptor plug YP_001747452.1 633261 R 390235 CDS YP_001747453.1 170719765 6109488 complement(635224..637119) 1 NC_010501.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 637119 6109488 PputW619_0579 Pseudomonas putida W619 1-deoxy-D-xylulose-5-phosphate synthase YP_001747453.1 635224 R 390235 CDS YP_001747454.1 170719766 6109489 complement(637232..638119) 1 NC_010501.1 PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0601 geranyltranstransferase; polyprenyl synthetase 638119 6109489 PputW619_0580 Pseudomonas putida W619 polyprenyl synthetase YP_001747454.1 637232 R 390235 CDS YP_001747455.1 170719767 6109490 complement(638116..638358) 1 NC_010501.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 638358 6109490 PputW619_0581 Pseudomonas putida W619 exodeoxyribonuclease VII small subunit YP_001747455.1 638116 R 390235 CDS YP_001747456.1 170719768 6109491 complement(638536..639186) 1 NC_010501.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 639186 ribB 6109491 ribB Pseudomonas putida W619 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001747456.1 638536 R 390235 CDS YP_001747457.1 170719769 6109492 complement(639501..640391) 1 NC_010501.1 PFAM: putative esterase; KEGG: pen:PSEEN0617 hypothetical protein; putative esterase 640391 6109492 PputW619_0583 Pseudomonas putida W619 putative esterase YP_001747457.1 639501 R 390235 CDS YP_001747458.1 170719770 6109493 complement(640474..641820) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pae:PA2687 two-component sensor PfeS; integral membrane sensor signal transduction histidine kinase 641820 6109493 PputW619_0584 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001747458.1 640474 R 390235 CDS YP_001747459.1 170719771 6109494 complement(641820..642512) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pae:PA2686 two-component response regulator PfeR; two component transcriptional regulator 642512 6109494 PputW619_0585 Pseudomonas putida W619 two component transcriptional regulator YP_001747459.1 641820 R 390235 CDS YP_001747460.1 170719772 6109495 642706..644880 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: csa:Csal_2539 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 644880 6109495 PputW619_0586 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001747460.1 642706 D 390235 CDS YP_001747461.1 170719773 6109496 645218..645460 1 NC_010501.1 KEGG: pen:PSEEN3675 hypothetical protein; hypothetical protein 645460 6109496 PputW619_0587 Pseudomonas putida W619 hypothetical protein YP_001747461.1 645218 D 390235 CDS YP_001747462.1 170719774 6109497 645468..645698 1 NC_010501.1 KEGG: pen:PSEEN2484 hypothetical protein; hypothetical protein 645698 6109497 PputW619_0588 Pseudomonas putida W619 hypothetical protein YP_001747462.1 645468 D 390235 CDS YP_001747463.1 170719775 6109498 complement(645937..646638) 1 NC_010501.1 KEGG: pen:PSEEN0625 transcriptional regulator; transcriptional regulator 646638 6109498 PputW619_0589 Pseudomonas putida W619 transcriptional regulator YP_001747463.1 645937 R 390235 CDS YP_001747464.1 170719776 6109499 complement(646810..647337) 1 NC_010501.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 647337 6109499 PputW619_0590 Pseudomonas putida W619 inorganic pyrophosphatase YP_001747464.1 646810 R 390235 CDS YP_001747465.1 170719777 6109500 complement(647431..648246) 1 NC_010501.1 PFAM: protein of unknown function DUF980; KEGG: pen:PSEEN0627 zinc-dependent peptidase (M family); hypothetical protein 648246 6109500 PputW619_0591 Pseudomonas putida W619 hypothetical protein YP_001747465.1 647431 R 390235 CDS YP_001747466.1 170719778 6109501 complement(648255..648902) 1 NC_010501.1 PFAM: SNARE associated Golgi protein; KEGG: pen:PSEEN0628 hypothetical protein; hypothetical protein 648902 6109501 PputW619_0592 Pseudomonas putida W619 hypothetical protein YP_001747466.1 648255 R 390235 CDS YP_001747467.1 170719779 6109502 complement(649094..649552) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0630 acetyltransferase, GNAT family; N-acetyltransferase GCN5 649552 6109502 PputW619_0593 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001747467.1 649094 R 390235 CDS YP_001747468.1 170719780 6109503 complement(649660..650478) 1 NC_010501.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 650478 6109503 PputW619_0594 Pseudomonas putida W619 ethanolamine ammonia-lyase small subunit YP_001747468.1 649660 R 390235 CDS YP_001747469.1 170719781 6109504 complement(650487..651881) 1 NC_010501.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pen:PSEEN0632 ethanolamine ammonia-lyase, heavy chain; ethanolamine ammonia lyase large subunit 651881 6109504 PputW619_0595 Pseudomonas putida W619 ethanolamine ammonia lyase large subunit YP_001747469.1 650487 R 390235 CDS YP_001747470.1 170719782 6109505 complement(651930..653378) 1 NC_010501.1 TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0633 transport protein; ethanolamine transporter 653378 6109505 PputW619_0596 Pseudomonas putida W619 ethanolamine transporter YP_001747470.1 651930 R 390235 CDS YP_001747471.1 170719783 6109506 complement(653555..655075) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0634 NAD+ dependent aldehyde dehydrogenase; aldehyde dehydrogenase 655075 6109506 PputW619_0597 Pseudomonas putida W619 aldehyde dehydrogenase YP_001747471.1 653555 R 390235 CDS YP_001747472.1 170719784 6109507 655332..657317 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0635 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 657317 6109507 PputW619_0598 Pseudomonas putida W619 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001747472.1 655332 D 390235 CDS YP_001747473.1 170719785 6109508 657384..658733 1 NC_010501.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN0636 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 658733 6109508 PputW619_0599 Pseudomonas putida W619 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_001747473.1 657384 D 390235 CDS YP_001747474.1 170719786 6109509 658730..659359 1 NC_010501.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pen:PSEEN0637 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 659359 6109509 PputW619_0600 Pseudomonas putida W619 aromatic acid decarboxylase YP_001747474.1 658730 D 390235 CDS YP_001747475.1 170719787 6109510 659377..659643 1 NC_010501.1 PFAM: protein of unknown function DUF1375; KEGG: pen:PSEEN0638 hypothetical protein; hypothetical protein 659643 6109510 PputW619_0601 Pseudomonas putida W619 hypothetical protein YP_001747475.1 659377 D 390235 CDS YP_001747476.1 170719788 6109511 complement(659690..660334) 1 NC_010501.1 KEGG: pen:PSEEN4841 hypothetical protein; hypothetical protein 660334 6109511 PputW619_0602 Pseudomonas putida W619 hypothetical protein YP_001747476.1 659690 R 390235 CDS YP_001747477.1 170719789 6109512 complement(660362..662095) 1 NC_010501.1 PFAM: Peptidase C13, legumain asparaginyl peptidase; MORN repeat-containing protein; KEGG: pen:PSEEN4840 hypothetical protein; peptidase C13, legumain asparaginyl peptidase 662095 6109512 PputW619_0603 Pseudomonas putida W619 peptidase C13, legumain asparaginyl peptidase YP_001747477.1 660362 R 390235 CDS YP_001747478.1 170719790 6109513 complement(662190..662645) 1 NC_010501.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN4838 MaoC-like dehydratase; dehydratase 662645 6109513 PputW619_0604 Pseudomonas putida W619 dehydratase YP_001747478.1 662190 R 390235 CDS YP_001747479.1 170719791 6109514 662790..663152 1 NC_010501.1 PFAM: LrgA family protein; KEGG: pen:PSEEN4836 hypothetical protein; LrgA family protein 663152 6109514 PputW619_0605 Pseudomonas putida W619 LrgA family protein YP_001747479.1 662790 D 390235 CDS YP_001747480.1 170719792 6109515 663149..663865 1 NC_010501.1 PFAM: LrgB family protein; KEGG: pen:PSEEN4835 hypothetical protein; LrgB family protein 663865 6109515 PputW619_0606 Pseudomonas putida W619 LrgB family protein YP_001747480.1 663149 D 390235 CDS YP_001747481.1 170719793 6109516 663875..664465 1 NC_010501.1 PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN4834 ATP-dependent protease La domain protein; peptidase S16 lon domain-containing protein 664465 6109516 PputW619_0607 Pseudomonas putida W619 peptidase S16 lon domain-containing protein YP_001747481.1 663875 D 390235 CDS YP_001747482.1 170719794 6109517 complement(664538..665854) 1 NC_010501.1 PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: pen:PSEEN4833 phosphatase, PAP2 family; PA-phosphatase-like phosphoesterase 665854 6109517 PputW619_0608 Pseudomonas putida W619 PA-phosphatase-like phosphoesterase YP_001747482.1 664538 R 390235 CDS YP_001747483.1 170719795 6109518 complement(665858..666550) 1 NC_010501.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 666550 6109518 PputW619_0609 Pseudomonas putida W619 3-methyladenine DNA glycosylase YP_001747483.1 665858 R 390235 CDS YP_001747484.1 170719796 6109519 666755..668026 1 NC_010501.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 668026 proA 6109519 proA Pseudomonas putida W619 gamma-glutamyl phosphate reductase YP_001747484.1 666755 D 390235 CDS YP_001747485.1 170719797 6109520 668028..668687 1 NC_010501.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 668687 nadD 6109520 nadD Pseudomonas putida W619 nicotinic acid mononucleotide adenylyltransferase YP_001747485.1 668028 D 390235 CDS YP_001747486.1 170719798 6109521 668733..669155 1 NC_010501.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pen:PSEEN4828 hypothetical protein; iojap family protein 669155 6109521 PputW619_0612 Pseudomonas putida W619 iojap family protein YP_001747486.1 668733 D 390235 CDS YP_001747487.1 170719799 6109522 669165..669632 1 NC_010501.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 669632 6109522 PputW619_0613 Pseudomonas putida W619 rRNA large subunit methyltransferase YP_001747487.1 669165 D 390235 CDS YP_001747488.1 170719800 6109523 669649..671538 1 NC_010501.1 KEGG: pen:PSEEN4826 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 671538 6109523 PputW619_0614 Pseudomonas putida W619 penicillin-binding protein 2 YP_001747488.1 669649 D 390235 CDS YP_001747489.1 170719801 6109524 671535..672680 1 NC_010501.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pen:PSEEN4825 rod shape-determining protein; rod shape-determining protein RodA 672680 6109524 PputW619_0615 Pseudomonas putida W619 rod shape-determining protein RodA YP_001747489.1 671535 D 390235 CDS YP_001747490.1 170719802 6109525 672698..673708 1 NC_010501.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pen:PSEEN4824 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B 673708 6109525 PputW619_0616 Pseudomonas putida W619 lytic murein transglycosylase B YP_001747490.1 672698 D 390235 CDS YP_001747491.1 170719803 6109526 673708..674706 1 NC_010501.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pen:PSEEN4823 lipoprotein, rare lipoprotein A family; rare lipoprotein A 674706 6109526 PputW619_0617 Pseudomonas putida W619 rare lipoprotein A YP_001747491.1 673708 D 390235 CDS YP_001747492.1 170719804 6109527 674961..676121 1 NC_010501.1 PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pen:PSEEN4822 D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor); serine-type D-Ala-D-Ala carboxypeptidase 676121 6109527 PputW619_0618 Pseudomonas putida W619 serine-type D-Ala-D-Ala carboxypeptidase YP_001747492.1 674961 D 390235 CDS YP_001747493.1 170719805 6109528 676194..676469 1 NC_010501.1 PFAM: protein of unknown function DUF493; KEGG: pen:PSEEN4821 hypothetical protein; hypothetical protein 676469 6109528 PputW619_0619 Pseudomonas putida W619 hypothetical protein YP_001747493.1 676194 D 390235 CDS YP_001747494.1 170719806 6109529 676469..677116 1 NC_010501.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 677116 lipB 6109529 lipB Pseudomonas putida W619 lipoate-protein ligase B YP_001747494.1 676469 D 390235 CDS YP_001747495.1 170719807 6109530 677119..678135 1 NC_010501.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 678135 6109530 PputW619_0621 Pseudomonas putida W619 lipoyl synthase YP_001747495.1 677119 D 390235 CDS YP_001747496.1 170719808 6109531 678222..679160 1 NC_010501.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pen:PSEEN4818 muramoyltetrapeptide carboxypeptidase; peptidase U61 LD-carboxypeptidase A 679160 6109531 PputW619_0622 Pseudomonas putida W619 peptidase U61 LD-carboxypeptidase A YP_001747496.1 678222 D 390235 CDS YP_001747497.1 170719809 6109532 complement(679269..680585) 1 NC_010501.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pen:PSEEN4817 membrane-bound lytic murein transglycosylase; lytic murein transglycosylase 680585 6109532 PputW619_0623 Pseudomonas putida W619 lytic murein transglycosylase YP_001747497.1 679269 R 390235 CDS YP_001747498.1 170719810 6109533 complement(680646..680810) 1 NC_010501.1 PFAM: protein of unknown function DUF331; KEGG: pen:PSEEN4816 hypothetical protein; hypothetical protein 680810 6109533 PputW619_0624 Pseudomonas putida W619 hypothetical protein YP_001747498.1 680646 R 390235 CDS YP_001747499.1 170719811 6109534 complement(680933..681988) 1 NC_010501.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 681988 holA 6109534 holA Pseudomonas putida W619 DNA polymerase III subunit delta YP_001747499.1 680933 R 390235 CDS YP_001747500.1 170719812 6109535 complement(682008..682613) 1 NC_010501.1 PFAM: Rare lipoprotein B; KEGG: pen:PSEEN4814 lipoprotein, rare lipoprotein B family; rare lipoprotein B 682613 6109535 PputW619_0626 Pseudomonas putida W619 rare lipoprotein B YP_001747500.1 682008 R 390235 CDS YP_001747501.1 170719813 6109536 complement(682675..685281) 1 NC_010501.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 685281 leuS 6109536 leuS Pseudomonas putida W619 leucyl-tRNA synthetase YP_001747501.1 682675 R 390235 CDS YP_001747502.1 170719814 6109537 685509..685823 1 NC_010501.1 KEGG: pen:PSEEN4812 hypothetical protein; hypothetical protein 685823 6109537 PputW619_0628 Pseudomonas putida W619 hypothetical protein YP_001747502.1 685509 D 390235 CDS YP_001747503.1 170719815 6109538 685958..686719 1 NC_010501.1 PFAM: protein of unknown function DUF218; KEGG: pen:PSEEN4811 hypothetical protein; hypothetical protein 686719 6109538 PputW619_0629 Pseudomonas putida W619 hypothetical protein YP_001747503.1 685958 D 390235 CDS YP_001747504.1 170719816 6109539 complement(686863..688380) 1 NC_010501.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 688380 lnt 6109539 lnt Pseudomonas putida W619 apolipoprotein N-acyltransferase YP_001747504.1 686863 R 390235 CDS YP_001747505.1 170719817 6109540 complement(688389..689228) 1 NC_010501.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: pen:PSEEN4809 magnesium and cobalt efflux protein CorC; hypothetical protein 689228 6109540 PputW619_0631 Pseudomonas putida W619 hypothetical protein YP_001747505.1 688389 R 390235 CDS YP_001747506.1 170719818 6109541 complement(689254..689727) 1 NC_010501.1 PFAM: protein of unknown function UPF0054; KEGG: pen:PSEEN4808 hypothetical protein; putative metalloprotease 689727 6109541 PputW619_0632 Pseudomonas putida W619 putative metalloprotease YP_001747506.1 689254 R 390235 CDS YP_001747507.1 170719819 6109542 complement(689720..690718) 1 NC_010501.1 PFAM: PhoH family protein; KEGG: pen:PSEEN4807 phosphate starvation-inducible protein (PhoH-like); PhoH family protein 690718 6109542 PputW619_0633 Pseudomonas putida W619 PhoH family protein YP_001747507.1 689720 R 390235 CDS YP_001747508.1 170719820 6109543 690840..691208 1 NC_010501.1 PFAM: Domain of unknown function DUF1820; KEGG: pfl:PFL_5431 hypothetical protein; hypothetical protein 691208 6109543 PputW619_0634 Pseudomonas putida W619 hypothetical protein YP_001747508.1 690840 D 390235 CDS YP_001747509.1 170719821 6109544 complement(691215..691760) 1 NC_010501.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4805 hypothetical protein; Sel1 domain-containing protein 691760 6109544 PputW619_0635 Pseudomonas putida W619 Sel1 domain-containing protein YP_001747509.1 691215 R 390235 CDS YP_001747510.1 170719822 6109545 complement(691948..693231) 1 NC_010501.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 693231 6109545 PputW619_0636 Pseudomonas putida W619 glutamate-1-semialdehyde aminotransferase YP_001747510.1 691948 R 390235 CDS YP_001747511.1 170719823 6109546 complement(693249..693872) 1 NC_010501.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 693872 thiE 6109546 thiE Pseudomonas putida W619 thiamine-phosphate pyrophosphorylase YP_001747511.1 693249 R 390235 CDS YP_001747512.1 170719824 6109547 complement(693887..694711) 1 NC_010501.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 694711 6109547 PputW619_0638 Pseudomonas putida W619 phosphomethylpyrimidine kinase YP_001747512.1 693887 R 390235 CDS YP_001747513.1 170719825 6109548 694950..696941 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4801 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 696941 6109548 PputW619_0639 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001747513.1 694950 D 390235 CDS YP_001747514.1 170719826 6109549 697040..698719 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN4800 acyl-CoA dehydrogenase (AidB); acyl-CoA dehydrogenase domain-containing protein 698719 6109549 PputW619_0640 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001747514.1 697040 D 390235 CDS YP_001747515.1 170719827 6109550 698788..700251 1 NC_010501.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 700251 6109550 PputW619_0641 Pseudomonas putida W619 AMP nucleosidase YP_001747515.1 698788 D 390235 CDS YP_001747516.1 170719828 6109551 700258..700887 1 NC_010501.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN4798 pseudouridylate synthase; pseudouridine synthase 700887 6109551 PputW619_0642 Pseudomonas putida W619 pseudouridine synthase YP_001747516.1 700258 D 390235 CDS YP_001747517.1 170719829 6109552 complement(700989..701192) 1 NC_010501.1 KEGG: pen:PSEEN4797 hypothetical protein; hypothetical protein 701192 6109552 PputW619_0643 Pseudomonas putida W619 hypothetical protein YP_001747517.1 700989 R 390235 CDS YP_001747518.1 170719830 6109553 complement(701225..701701) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: pen:PSEEN4796 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 701701 6109553 PputW619_0644 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001747518.1 701225 R 390235 CDS YP_001747519.1 170719831 6109554 702096..702935 1 NC_010501.1 KEGG: pen:PSEEN4795 hypothetical protein; hypothetical protein 702935 6109554 PputW619_0645 Pseudomonas putida W619 hypothetical protein YP_001747519.1 702096 D 390235 CDS YP_001747520.1 170719832 6109555 complement(702939..703808) 1 NC_010501.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pen:PSEEN4794 cation efflux protein; cation diffusion facilitator family transporter 703808 6109555 PputW619_0646 Pseudomonas putida W619 cation diffusion facilitator family transporter YP_001747520.1 702939 R 390235 CDS YP_001747521.1 170719833 6109556 complement(703834..704253) 1 NC_010501.1 KEGG: pen:PSEEN4793 hypothetical protein; hypothetical protein 704253 6109556 PputW619_0647 Pseudomonas putida W619 hypothetical protein YP_001747521.1 703834 R 390235 CDS YP_001747522.1 170719834 6109557 704371..706899 1 NC_010501.1 KEGG: pen:PSEEN4792 helicase, ATP-dependent; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 706899 6109557 PputW619_0648 Pseudomonas putida W619 ATP-dependent helicase HrpB YP_001747522.1 704371 D 390235 CDS YP_001747523.1 170719835 6109558 complement(706910..707404) 1 NC_010501.1 hypothetical protein 707404 6109558 PputW619_0649 Pseudomonas putida W619 hypothetical protein YP_001747523.1 706910 R 390235 CDS YP_001747524.1 170719836 6109559 complement(707481..708137) 1 NC_010501.1 PFAM: protein of unknown function UPF0259; KEGG: pen:PSEEN4791 hypothetical protein; hypothetical protein 708137 6109559 PputW619_0650 Pseudomonas putida W619 hypothetical protein YP_001747524.1 707481 R 390235 CDS YP_001747525.1 170719837 6109560 708291..709052 1 NC_010501.1 KEGG: pen:PSEEN4790 hypothetical protein; putative periplasmic ligand-binding sensor protein 709052 6109560 PputW619_0651 Pseudomonas putida W619 putative periplasmic ligand-binding sensor protein YP_001747525.1 708291 D 390235 CDS YP_001747526.1 170719838 6109561 709117..709596 1 NC_010501.1 PFAM: protein of unknown function DUF88; KEGG: pen:PSEEN4789 hypothetical protein; hypothetical protein 709596 6109561 PputW619_0652 Pseudomonas putida W619 hypothetical protein YP_001747526.1 709117 D 390235 CDS YP_001747527.1 170719839 6109562 709743..710663 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4787 transporter; hypothetical protein 710663 6109562 PputW619_0653 Pseudomonas putida W619 hypothetical protein YP_001747527.1 709743 D 390235 CDS YP_001747528.1 170719840 6109563 710719..712038 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN0718 ATP-dependent RNA helicase, DEAD box family (RhlE); DEAD/DEAH box helicase 712038 6109563 PputW619_0654 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001747528.1 710719 D 390235 CDS YP_001747529.1 170719841 6109564 complement(712128..713402) 1 NC_010501.1 PFAM: HI0933 family protein; KEGG: pen:PSEEN0719 hypothetical protein; hypothetical protein 713402 6109564 PputW619_0655 Pseudomonas putida W619 hypothetical protein YP_001747529.1 712128 R 390235 CDS YP_001747530.1 170719842 6109565 complement(713519..714433) 1 NC_010501.1 PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN0720 hydrolase; histone deacetylase family protein; histone deacetylase superfamily protein 714433 6109565 PputW619_0656 Pseudomonas putida W619 histone deacetylase superfamily protein YP_001747530.1 713519 R 390235 CDS YP_001747531.1 170719843 6109566 714547..715119 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0723 acetyltransferase, GNAT family; N-acetyltransferase GCN5 715119 6109566 PputW619_0657 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001747531.1 714547 D 390235 CDS YP_001747532.1 170719844 6109567 715211..716080 1 NC_010501.1 KEGG: pen:PSEEN0725 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 716080 6109567 PputW619_0658 Pseudomonas putida W619 acyl-CoA thioesterase II YP_001747532.1 715211 D 390235 CDS YP_001747533.1 170719845 6109568 716077..716667 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 716667 6109568 PputW619_0659 Pseudomonas putida W619 HAD family hydrolase YP_001747533.1 716077 D 390235 CDS YP_001747534.1 170719846 6109569 716818..717828 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0727 oxidoreductase, zinc-binding alcohol dehydrogenase; alcohol dehydrogenase 717828 6109569 PputW619_0660 Pseudomonas putida W619 alcohol dehydrogenase YP_001747534.1 716818 D 390235 CDS YP_001747535.1 170719847 6109570 complement(717838..718536) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0729 transcriptional regulator, GntR family; GntR family transcriptional regulator 718536 6109570 PputW619_0661 Pseudomonas putida W619 GntR family transcriptional regulator YP_001747535.1 717838 R 390235 CDS YP_001747536.1 170719848 6109571 718798..720150 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0730 transport protein, MFS superfamily; major facilitator transporter 720150 6109571 PputW619_0662 Pseudomonas putida W619 major facilitator transporter YP_001747536.1 718798 D 390235 CDS YP_001747537.1 170719849 6109572 720170..721525 1 NC_010501.1 KEGG: pen:PSEEN0731 D-glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 721525 6109572 PputW619_0663 Pseudomonas putida W619 glucarate dehydratase YP_001747537.1 720170 D 390235 CDS YP_001747538.1 170719850 6109573 complement(721626..722513) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3962 transcriptional regulator, LysR family; LysR family transcriptional regulator 722513 6109573 PputW619_0664 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747538.1 721626 R 390235 CDS YP_001747539.1 170719851 6109574 722614..723564 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bur:Bcep18194_B1307 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 723564 6109574 PputW619_0665 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001747539.1 722614 D 390235 CDS YP_001747540.1 170719852 6109575 723730..725073 1 NC_010501.1 TIGRFAM: d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bmu:Bmul_4121 major facilitator superfamily MFS_1; d-galactonate transporter 725073 6109575 PputW619_0666 Pseudomonas putida W619 d-galactonate transporter YP_001747540.1 723730 D 390235 CDS YP_001747541.1 170719853 6109576 725437..726831 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; amino acid permease-associated protein 726831 6109576 PputW619_0667 Pseudomonas putida W619 amino acid permease-associated protein YP_001747541.1 725437 D 390235 CDS YP_001747542.1 170719854 6109577 726958..727740 1 NC_010501.1 KEGG: pen:PSEEN0738 hypothetical protein; hypothetical protein 727740 6109577 PputW619_0668 Pseudomonas putida W619 hypothetical protein YP_001747542.1 726958 D 390235 CDS YP_001747543.1 170719855 6109578 727737..729056 1 NC_010501.1 KEGG: pen:PSEEN0739 hypothetical protein; hypothetical protein 729056 6109578 PputW619_0669 Pseudomonas putida W619 hypothetical protein YP_001747543.1 727737 D 390235 CDS YP_001747544.1 170719856 6109579 729056..731149 1 NC_010501.1 PFAM: peptidase M50; KEGG: pen:PSEEN0740 membrane zinc metallopeptidase, M50 family; peptidase M50 731149 6109579 PputW619_0670 Pseudomonas putida W619 peptidase M50 YP_001747544.1 729056 D 390235 CDS YP_001747545.1 170719857 6109580 731175..731975 1 NC_010501.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN0741 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase 731975 6109580 PputW619_0671 Pseudomonas putida W619 aspartyl/asparaginyl beta-hydroxylase YP_001747545.1 731175 D 390235 CDS YP_001747546.1 170719858 6109581 731963..732946 1 NC_010501.1 KEGG: pen:PSEEN0742 hypothetical protein; hypothetical protein 732946 6109581 PputW619_0672 Pseudomonas putida W619 hypothetical protein YP_001747546.1 731963 D 390235 CDS YP_001747547.1 170719859 6109582 733119..733589 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0743 acetyltransferase, GNAT family; N-acetyltransferase GCN5 733589 6109582 PputW619_0673 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001747547.1 733119 D 390235 CDS YP_001747548.1 170719860 6109583 733645..734232 1 NC_010501.1 PFAM: Tail Collar domain protein; KEGG: pen:PSEEN0745 phage tail collar; tail collar domain-containing protein 734232 6109583 PputW619_0674 Pseudomonas putida W619 tail collar domain-containing protein YP_001747548.1 733645 D 390235 CDS YP_001747549.1 170719861 6109584 734363..743563 1 NC_010501.1 SMART: Pyrrolo-quinoline quinone; Parallel beta-helix repeat; KEGG: pen:PSEEN0746 hypothetical protein; Pyrrolo-quinoline quinone 743563 6109584 PputW619_0675 Pseudomonas putida W619 Pyrrolo-quinoline quinone YP_001747549.1 734363 D 390235 CDS YP_001747550.1 170719862 6109585 743573..745123 1 NC_010501.1 PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0747 efflux outer membrane protein; outer membrane efflux protein 745123 6109585 PputW619_0676 Pseudomonas putida W619 outer membrane efflux protein YP_001747550.1 743573 D 390235 CDS YP_001747551.1 170719863 6109586 complement(745107..745682) 1 NC_010501.1 PFAM: adenylylsulfate kinase; KEGG: pen:PSEEN0748 adenosine 5'-phosphosulfate kinase; adenylylsulfate kinase 745682 6109586 PputW619_0677 Pseudomonas putida W619 adenylylsulfate kinase YP_001747551.1 745107 R 390235 CDS YP_001747552.1 170719864 6109587 complement(745875..747743) 1 NC_010501.1 KEGG: pfl:PFL_3844 ATP/GTP-binding protein, putative; ATP/GTP-binding protein 747743 6109587 PputW619_0678 Pseudomonas putida W619 ATP/GTP-binding protein YP_001747552.1 745875 R 390235 CDS YP_001747553.1 170719865 6109588 complement(747768..748151) 1 NC_010501.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pfl:PFL_3843 MazG nucleotide pyrophosphohydrolase domain protein; MazG nucleotide pyrophosphohydrolase 748151 6109588 PputW619_0679 Pseudomonas putida W619 MazG nucleotide pyrophosphohydrolase YP_001747553.1 747768 R 390235 CDS YP_001747554.1 170719866 6109589 748742..749794 1 NC_010501.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: nmn:NMCC_1094 modification methylase (cytosine-specific DNA methylase); C-5 cytosine-specific DNA methylase 749794 6109589 PputW619_0680 Pseudomonas putida W619 C-5 cytosine-specific DNA methylase YP_001747554.1 748742 D 390235 CDS YP_001747555.1 170719867 6109590 complement(750205..750942) 1 NC_010501.1 KEGG: ter:Tery_4677 hypothetical protein; hypothetical protein 750942 6109590 PputW619_0681 Pseudomonas putida W619 hypothetical protein YP_001747555.1 750205 R 390235 CDS YP_001747556.1 170719868 6109591 complement(750929..752032) 1 NC_010501.1 PFAM: protein of unknown function DUF262; KEGG: pna:Pnap_4975 protein of unknown function DUF262; hypothetical protein 752032 6109591 PputW619_0682 Pseudomonas putida W619 hypothetical protein YP_001747556.1 750929 R 390235 CDS YP_001747557.1 170719869 6109592 complement(752935..753438) 1 NC_010501.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: pmb:A9601_04271 hypothetical protein; DNA mismatch endonuclease Vsr 753438 6109592 PputW619_0683 Pseudomonas putida W619 DNA mismatch endonuclease Vsr YP_001747557.1 752935 R 390235 CDS YP_001747558.1 170719870 6109593 753456..755477 1 NC_010501.1 KEGG: sfu:Sfum_3853 hypothetical protein; hypothetical protein 755477 6109593 PputW619_0684 Pseudomonas putida W619 hypothetical protein YP_001747558.1 753456 D 390235 CDS YP_001747559.1 170719871 6109594 complement(755884..757008) 1 NC_010501.1 KEGG: bur:Bcep18194_B0516 hypothetical protein; hypothetical protein 757008 6109594 PputW619_0685 Pseudomonas putida W619 hypothetical protein YP_001747559.1 755884 R 390235 CDS YP_001747560.1 170719872 6109595 complement(757539..758519) 1 NC_010501.1 KEGG: pfo:Pfl_0746 phage integrase; phage integrase 758519 6109595 PputW619_0686 Pseudomonas putida W619 phage integrase YP_001747560.1 757539 R 390235 CDS YP_001747561.1 170719873 6109596 complement(759271..759537) 1 NC_010501.1 KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 759537 6109596 PputW619_0687 Pseudomonas putida W619 hypothetical protein YP_001747561.1 759271 R 390235 CDS YP_001747562.1 170719874 6109597 complement(759652..759894) 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 759894 6109597 PputW619_0688 Pseudomonas putida W619 hypothetical protein YP_001747562.1 759652 R 390235 CDS YP_001747563.1 170719875 6109599 complement(760750..761043) 1 NC_010501.1 KEGG: pen:PSEEN0762 hypothetical protein; hypothetical protein 761043 6109599 PputW619_0689 Pseudomonas putida W619 hypothetical protein YP_001747563.1 760750 R 390235 CDS YP_001747564.1 170719876 6109600 complement(761194..761442) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 761442 6109600 PputW619_0690 Pseudomonas putida W619 hypothetical protein YP_001747564.1 761194 R 390235 CDS YP_001747565.1 170719877 6109601 complement(761447..761716) 1 NC_010501.1 KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein 761716 6109601 PputW619_0691 Pseudomonas putida W619 hypothetical protein YP_001747565.1 761447 R 390235 CDS YP_001747566.1 170719878 6109602 complement(762108..762356) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 762356 6109602 PputW619_0692 Pseudomonas putida W619 hypothetical protein YP_001747566.1 762108 R 390235 CDS YP_001747567.1 170719879 6109603 complement(762361..762630) 1 NC_010501.1 KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein 762630 6109603 PputW619_0693 Pseudomonas putida W619 hypothetical protein YP_001747567.1 762361 R 390235 CDS YP_001747568.1 170719880 6109604 complement(763303..766113) 1 NC_010501.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN0766 D-lactate deshydrogenase; D-lactate dehydrogenase 766113 6109604 PputW619_0694 Pseudomonas putida W619 D-lactate dehydrogenase YP_001747568.1 763303 R 390235 CDS YP_001747569.1 170719881 6109605 complement(766187..767332) 1 NC_010501.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 767332 lldD 6109605 lldD Pseudomonas putida W619 L-lactate dehydrogenase YP_001747569.1 766187 R 390235 CDS YP_001747570.1 170719882 6109606 complement(767396..769066) 1 NC_010501.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pen:PSEEN0768 L-lactate permease; L-lactate transport 769066 6109606 PputW619_0696 Pseudomonas putida W619 L-lactate transport YP_001747570.1 767396 R 390235 CDS YP_001747571.1 170719883 6109607 769323..770090 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0769 transcriptional regulator, GntR family; GntR family transcriptional regulator 770090 6109607 PputW619_0697 Pseudomonas putida W619 GntR family transcriptional regulator YP_001747571.1 769323 D 390235 CDS YP_001747572.1 170719884 6109608 complement(770266..770748) 1 NC_010501.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 770748 smpB 6109608 smpB Pseudomonas putida W619 SsrA-binding protein YP_001747572.1 770266 R 390235 CDS YP_001747573.1 170719885 6109609 770798..770914 1 NC_010501.1 hypothetical protein 770914 6109609 PputW619_0699 Pseudomonas putida W619 hypothetical protein YP_001747573.1 770798 D 390235 CDS YP_001747574.1 170719886 6109610 770911..771345 1 NC_010501.1 PFAM: cyclase/dehydrase; KEGG: pen:PSEEN0771 hypothetical protein; cyclase/dehydrase 771345 6109610 PputW619_0700 Pseudomonas putida W619 cyclase/dehydrase YP_001747574.1 770911 D 390235 CDS YP_001747575.1 170719887 6109611 complement(771407..771943) 1 NC_010501.1 PFAM: SmpA/OmlA domain protein; KEGG: pen:PSEEN0773 outer membrane lipoprotein OmlA; SmpA/OmlA domain-containing protein 771943 6109611 PputW619_0701 Pseudomonas putida W619 SmpA/OmlA domain-containing protein YP_001747575.1 771407 R 390235 CDS YP_001747576.1 170719888 6109612 772041..772445 1 NC_010501.1 PFAM: ferric-uptake regulator; KEGG: pen:PSEEN0775 transcriptional repressor for ferric uptake; ferric uptake regulator family protein 772445 6109612 PputW619_0702 Pseudomonas putida W619 ferric uptake regulator family protein YP_001747576.1 772041 D 390235 CDS YP_001747577.1 170719889 6109613 complement(772558..774231) 1 NC_010501.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pen:PSEEN0776 DNA repair protein RecN; DNA repair protein RecN 774231 6109613 PputW619_0703 Pseudomonas putida W619 DNA repair protein RecN YP_001747577.1 772558 R 390235 CDS YP_001747578.1 170719890 6109614 774423..774977 1 NC_010501.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 774977 6109614 PputW619_0704 Pseudomonas putida W619 heat shock protein GrpE YP_001747578.1 774423 D 390235 CDS YP_001747579.1 170719891 6109615 775079..777007 1 NC_010501.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 777007 dnaK 6109615 dnaK Pseudomonas putida W619 molecular chaperone DnaK YP_001747579.1 775079 D 390235 CDS YP_001747580.1 170719892 6109616 777205..778329 1 NC_010501.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 778329 6109616 PputW619_0706 Pseudomonas putida W619 chaperone protein DnaJ YP_001747580.1 777205 D 390235 CDS YP_001747581.1 170719893 6109617 778343..779146 1 NC_010501.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 779146 6109617 PputW619_0707 Pseudomonas putida W619 dihydrodipicolinate reductase YP_001747581.1 778343 D 390235 CDS YP_001747582.1 170719894 6109618 779496..780656 1 NC_010501.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 780656 6109618 PputW619_0708 Pseudomonas putida W619 carbamoyl phosphate synthase small subunit YP_001747582.1 779496 D 390235 CDS YP_001747583.1 170719895 6109619 780762..783983 1 NC_010501.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 783983 carB 6109619 carB Pseudomonas putida W619 carbamoyl phosphate synthase large subunit YP_001747583.1 780762 D 390235 CDS YP_001747584.1 170719896 6109620 783980..784462 1 NC_010501.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 784462 greA 6109620 greA Pseudomonas putida W619 transcription elongation factor GreA YP_001747584.1 783980 D 390235 CDS YP_001747585.1 170719897 6109621 784440..784889 1 NC_010501.1 KEGG: pen:PSEEN0784 hypothetical protein; hypothetical protein 784889 6109621 PputW619_0711 Pseudomonas putida W619 hypothetical protein YP_001747585.1 784440 D 390235 CDS YP_001747586.1 170719898 6109622 complement(784902..785210) 1 NC_010501.1 PFAM: protein of unknown function UPF0044; KEGG: pen:PSEEN0785 hypothetical protein; hypothetical protein 785210 6109622 PputW619_0712 Pseudomonas putida W619 hypothetical protein YP_001747586.1 784902 R 390235 CDS YP_001747587.1 170719899 6109623 785313..785939 1 NC_010501.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pen:PSEEN0786 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent; ribosomal RNA methyltransferase RrmJ/FtsJ 785939 6109623 PputW619_0713 Pseudomonas putida W619 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001747587.1 785313 D 390235 CDS YP_001747588.1 170719900 6109624 786143..788047 1 NC_010501.1 KEGG: pen:PSEEN0787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 788047 6109624 PputW619_0714 Pseudomonas putida W619 ATP-dependent metalloprotease FtsH YP_001747588.1 786143 D 390235 CDS YP_001747589.1 170719901 6109625 788056..788907 1 NC_010501.1 KEGG: pen:PSEEN0788 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 788907 6109625 PputW619_0715 Pseudomonas putida W619 dihydropteroate synthase YP_001747589.1 788056 D 390235 CDS YP_001747590.1 170719902 6109626 788924..790264 1 NC_010501.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 790264 glmM 6109626 glmM Pseudomonas putida W619 phosphoglucosamine mutase YP_001747590.1 788924 D 390235 CDS YP_001747591.1 170719903 6109627 790331..791086 1 NC_010501.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 791086 tpiA 6109627 tpiA Pseudomonas putida W619 triosephosphate isomerase YP_001747591.1 790331 D 390235 CDS YP_001747592.1 170719904 6109628 791091..791483 1 NC_010501.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pen:PSEEN0792 preprotein translocase SecG subunit; preprotein translocase subunit SecG 791483 secG 6109628 secG Pseudomonas putida W619 preprotein translocase subunit SecG YP_001747592.1 791091 D 390235 CDS YP_001747593.1 170719905 6109631 791845..792354 1 NC_010501.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 792354 6109631 PputW619_0719 Pseudomonas putida W619 hypothetical protein YP_001747593.1 791845 D 390235 CDS YP_001747594.1 170719906 6109632 792414..793895 1 NC_010501.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 793895 nusA 6109632 nusA Pseudomonas putida W619 transcription elongation factor NusA YP_001747594.1 792414 D 390235 CDS YP_001747595.1 170719907 6109633 793923..796454 1 NC_010501.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 796454 infB 6109633 infB Pseudomonas putida W619 translation initiation factor IF-2 YP_001747595.1 793923 D 390235 CDS YP_001747596.1 170719908 6109634 796570..796968 1 NC_010501.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 796968 rbfA 6109634 rbfA Pseudomonas putida W619 ribosome-binding factor A YP_001747596.1 796570 D 390235 CDS YP_001747597.1 170719909 6109635 796972..797889 1 NC_010501.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 797889 truB 6109635 truB Pseudomonas putida W619 tRNA pseudouridine synthase B YP_001747597.1 796972 D 390235 CDS YP_001747598.1 170719910 6109636 798036..798305 1 NC_010501.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 798305 rpsO 6109636 rpsO Pseudomonas putida W619 30S ribosomal protein S15 YP_001747598.1 798036 D 390235 CDS YP_001747599.1 170719911 6109637 798557..800662 1 NC_010501.1 KEGG: pen:PSEEN0799 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 800662 6109637 PputW619_0725 Pseudomonas putida W619 polynucleotide phosphorylase/polyadenylase YP_001747599.1 798557 D 390235 CDS YP_001747600.1 170719912 6109638 800928..801281 1 NC_010501.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_4184 osmotically inducible protein, puative; transport-associated 801281 6109638 PputW619_0726 Pseudomonas putida W619 transport-associated YP_001747600.1 800928 D 390235 CDS YP_001747601.1 170719913 6109639 complement(801359..801661) 1 NC_010501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4742 hypothetical protein; antibiotic biosynthesis monooxygenase 801661 6109639 PputW619_0727 Pseudomonas putida W619 antibiotic biosynthesis monooxygenase YP_001747601.1 801359 R 390235 CDS YP_001747602.1 170719914 6109640 801722..802135 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN4741 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 802135 6109640 PputW619_0728 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001747602.1 801722 D 390235 CDS YP_001747603.1 170719915 6109641 complement(802270..805206) 1 NC_010501.1 PFAM: protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein; hypothetical protein 805206 6109641 PputW619_0729 Pseudomonas putida W619 hypothetical protein YP_001747603.1 802270 R 390235 CDS YP_001747604.1 170719916 6109642 complement(805287..806156) 1 NC_010501.1 KEGG: pen:PSEEN4739 hypothetical protein; hypothetical protein 806156 6109642 PputW619_0730 Pseudomonas putida W619 hypothetical protein YP_001747604.1 805287 R 390235 CDS YP_001747605.1 170719917 6109643 complement(806199..808133) 1 NC_010501.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 808133 6109643 PputW619_0731 Pseudomonas putida W619 acetyl-CoA synthetase YP_001747605.1 806199 R 390235 CDS YP_001747606.1 170719918 6109644 complement(808263..809927) 1 NC_010501.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 809927 pgi 6109644 pgi Pseudomonas putida W619 glucose-6-phosphate isomerase YP_001747606.1 808263 R 390235 CDS YP_001747607.1 170719919 6109645 complement(810071..810934) 1 NC_010501.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 810934 panC 6109645 panC Pseudomonas putida W619 pantoate--beta-alanine ligase YP_001747607.1 810071 R 390235 CDS YP_001747608.1 170719920 6109646 complement(810931..811731) 1 NC_010501.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 811731 panB 6109646 panB Pseudomonas putida W619 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001747608.1 810931 R 390235 CDS YP_001747609.1 170719921 6109647 complement(811995..812474) 1 NC_010501.1 KEGG: pen:PSEEN4734 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 812474 6109647 PputW619_0735 Pseudomonas putida W619 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001747609.1 811995 R 390235 CDS YP_001747610.1 170719922 6109648 complement(812471..813859) 1 NC_010501.1 KEGG: pen:PSEEN4733 poly(A) polymerase I (PAP); TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 813859 6109648 PputW619_0736 Pseudomonas putida W619 poly(A) polymerase YP_001747610.1 812471 R 390235 CDS YP_001747611.1 170719923 6109649 complement(814636..816075) 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4730 response regulator CbrB; Fis family two component sigma-54 specific transcriptional regulator 816075 6109649 PputW619_0737 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001747611.1 814636 R 390235 CDS YP_001747612.1 170719924 6109650 complement(816080..819055) 1 NC_010501.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN4729 sensory box histidine kinase CrbA; multi-sensor signal transduction histidine kinase 819055 6109650 PputW619_0738 Pseudomonas putida W619 multi-sensor signal transduction histidine kinase YP_001747612.1 816080 R 390235 CDS YP_001747613.1 170719925 6109651 complement(819039..819215) 1 NC_010501.1 KEGG: pen:PSEEN4728 hypothetical protein; hypothetical protein 819215 6109651 PputW619_0739 Pseudomonas putida W619 hypothetical protein YP_001747613.1 819039 R 390235 CDS YP_001747614.1 170719926 6109652 complement(819398..820285) 1 NC_010501.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 820285 6109652 PputW619_0740 Pseudomonas putida W619 glutamyl-Q tRNA(Asp) synthetase YP_001747614.1 819398 R 390235 CDS YP_001747615.1 170719927 6109653 complement(820349..820792) 1 NC_010501.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN4726 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 820792 6109653 PputW619_0741 Pseudomonas putida W619 TraR/DksA family transcriptional regulator YP_001747615.1 820349 R 390235 CDS YP_001747616.1 170719928 6109654 821003..822175 1 NC_010501.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN4725 aminotransferase, class I; hypothetical protein 822175 6109654 PputW619_0742 Pseudomonas putida W619 hypothetical protein YP_001747616.1 821003 D 390235 CDS YP_001747617.1 170719929 6109655 822175..822888 1 NC_010501.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 822888 6109655 PputW619_0743 Pseudomonas putida W619 sugar fermentation stimulation protein A YP_001747617.1 822175 D 390235 CDS YP_001747618.1 170719930 6109656 complement(822878..823195) 1 NC_010501.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN4723 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 823195 6109656 PputW619_0744 Pseudomonas putida W619 Rieske (2Fe-2S) domain-containing protein YP_001747618.1 822878 R 390235 CDS YP_001747619.1 170719931 6109657 823345..824229 1 NC_010501.1 PFAM: periplasmic binding protein; KEGG: pen:PSEEN4722 ABC transporter, periplasmic binding protein; periplasmic binding protein 824229 6109657 PputW619_0745 Pseudomonas putida W619 periplasmic binding protein YP_001747619.1 823345 D 390235 CDS YP_001747620.1 170719932 6109658 824226..825263 1 NC_010501.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: pen:PSEEN4721 ABC transporter, permease component; transport system permease 825263 6109658 PputW619_0746 Pseudomonas putida W619 transport system permease YP_001747620.1 824226 D 390235 CDS YP_001747621.1 170719933 6109659 825263..826030 1 NC_010501.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 826030 hmuV 6109659 hmuV Pseudomonas putida W619 hemin importer ATP-binding subunit YP_001747621.1 825263 D 390235 CDS YP_001747622.1 170719934 6109660 826043..826930 1 NC_010501.1 PFAM: protein of unknown function DUF399; KEGG: pen:PSEEN4719 hypothetical protein; hypothetical protein 826930 6109660 PputW619_0748 Pseudomonas putida W619 hypothetical protein YP_001747622.1 826043 D 390235 CDS YP_001747623.1 170719935 6109661 complement(827132..827410) 1 NC_010501.1 PFAM: TfoX domain protein; KEGG: pen:PSEEN4718 hypothetical protein; TfoX domain-containing protein 827410 6109661 PputW619_0749 Pseudomonas putida W619 TfoX domain-containing protein YP_001747623.1 827132 R 390235 CDS YP_001747624.1 170719936 6109662 complement(827588..829150) 1 NC_010501.1 KEGG: pen:PSEEN4716 hypothetical protein; hypothetical protein 829150 6109662 PputW619_0750 Pseudomonas putida W619 hypothetical protein YP_001747624.1 827588 R 390235 CDS YP_001747625.1 170719937 6109663 829268..831589 1 NC_010501.1 KEGG: pen:PSEEN4715 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 831589 6109663 PputW619_0751 Pseudomonas putida W619 penicillin-binding protein 1B YP_001747625.1 829268 D 390235 CDS YP_001747626.1 170719938 6109664 831617..832393 1 NC_010501.1 KEGG: pen:PSEEN4714 hypothetical protein; hypothetical protein 832393 6109664 PputW619_0752 Pseudomonas putida W619 hypothetical protein YP_001747626.1 831617 D 390235 CDS YP_001747627.1 170719939 6109665 832393..832719 1 NC_010501.1 PFAM: protein of unknown function DUF446; KEGG: pen:PSEEN4713 hypothetical protein; hypothetical protein 832719 6109665 PputW619_0753 Pseudomonas putida W619 hypothetical protein YP_001747627.1 832393 D 390235 CDS YP_001747628.1 170719940 6109666 833134..834858 1 NC_010501.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 834858 6109666 PputW619_0754 Pseudomonas putida W619 acetolactate synthase 3 catalytic subunit YP_001747628.1 833134 D 390235 CDS YP_001747629.1 170719941 6109667 834860..835351 1 NC_010501.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 835351 ilvH 6109667 ilvH Pseudomonas putida W619 acetolactate synthase 3 regulatory subunit YP_001747629.1 834860 D 390235 CDS YP_001747630.1 170719942 6109668 835406..836422 1 NC_010501.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 836422 6109668 PputW619_0756 Pseudomonas putida W619 ketol-acid reductoisomerase YP_001747630.1 835406 D 390235 CDS YP_001747631.1 170719943 6109669 836573..837424 1 NC_010501.1 KEGG: pen:PSEEN4708 phosphatidylserine synthase PssA; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 837424 6109669 PputW619_0757 Pseudomonas putida W619 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001747631.1 836573 D 390235 CDS YP_001747632.1 170719944 6109670 837501..838514 1 NC_010501.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 838514 6109670 PputW619_0758 Pseudomonas putida W619 putative sulfite oxidase subunit YedY YP_001747632.1 837501 D 390235 CDS YP_001747633.1 170719945 6109671 838514..839128 1 NC_010501.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 839128 6109671 PputW619_0759 Pseudomonas putida W619 putative sulfite oxidase subunit YedZ YP_001747633.1 838514 D 390235 CDS YP_001747634.1 170719946 6109677 844995..848471 1 NC_010501.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: pen:PSEEN0691 exonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 848471 6109677 PputW619_0760 Pseudomonas putida W619 exodeoxyribonuclease V subunit gamma YP_001747634.1 844995 D 390235 CDS YP_001747635.1 170719947 6109678 848468..852139 1 NC_010501.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN0692 exonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 852139 6109678 PputW619_0761 Pseudomonas putida W619 exodeoxyribonuclease V subunit beta YP_001747635.1 848468 D 390235 CDS YP_001747636.1 170719948 6109679 852136..854211 1 NC_010501.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pen:PSEEN0693 exonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 854211 6109679 PputW619_0762 Pseudomonas putida W619 exodeoxyribonuclease V subunit alpha YP_001747636.1 852136 D 390235 CDS YP_001747637.1 170719949 6109680 854341..854886 1 NC_010501.1 KEGG: pen:PSEEN0695 hypothetical protein; hypothetical protein 854886 6109680 PputW619_0763 Pseudomonas putida W619 hypothetical protein YP_001747637.1 854341 D 390235 CDS YP_001747638.1 170719950 6109681 854883..856157 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0696 hypothetical protein; diguanylate cyclase 856157 6109681 PputW619_0764 Pseudomonas putida W619 diguanylate cyclase YP_001747638.1 854883 D 390235 CDS YP_001747639.1 170719951 6109682 856161..856652 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0697 outer membrane lipoprotein (OmpA domain); OmpA/MotB domain-containing protein 856652 6109682 PputW619_0765 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001747639.1 856161 D 390235 CDS YP_001747640.1 170719952 6109683 complement(856766..857782) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0698 transcriptional regulator, LysR family; LysR family transcriptional regulator 857782 6109683 PputW619_0766 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747640.1 856766 R 390235 CDS YP_001747641.1 170719953 6109684 857849..859375 1 NC_010501.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0699 methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein; methylmalonate-semialdehyde dehydrogenase 859375 6109684 PputW619_0767 Pseudomonas putida W619 methylmalonate-semialdehyde dehydrogenase YP_001747641.1 857849 D 390235 CDS YP_001747642.1 170719954 6109685 859386..860273 1 NC_010501.1 KEGG: pen:PSEEN0700 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 860273 6109685 PputW619_0768 Pseudomonas putida W619 3-hydroxyisobutyrate dehydrogenase YP_001747642.1 859386 D 390235 CDS YP_001747643.1 170719955 6109686 complement(860780..861757) 1 NC_010501.1 KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein 861757 6109686 PputW619_0769 Pseudomonas putida W619 hypothetical protein YP_001747643.1 860780 R 390235 CDS YP_001747644.1 170719956 6109687 complement(861768..862256) 1 NC_010501.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector 862256 6109687 PputW619_0770 Pseudomonas putida W619 Hcp1 family type VI secretion system effector YP_001747644.1 861768 R 390235 CDS YP_001747645.1 170719957 6109688 complement(862496..862840) 1 NC_010501.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN0704 hypothetical protein; hypothetical protein 862840 6109688 PputW619_0771 Pseudomonas putida W619 hypothetical protein YP_001747645.1 862496 R 390235 CDS YP_001747646.1 170719958 6109689 complement(862966..863850) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 863850 6109689 PputW619_0772 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747646.1 862966 R 390235 CDS YP_001747647.1 170719959 6109690 863917..864693 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pfo:Pfl_0716 protein of unknown function DUF81; hypothetical protein 864693 6109690 PputW619_0773 Pseudomonas putida W619 hypothetical protein YP_001747647.1 863917 D 390235 CDS YP_001747648.1 170719960 6109691 complement(864683..864997) 1 NC_010501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN0713 hypothetical protein; antibiotic biosynthesis monooxygenase 864997 6109691 PputW619_0774 Pseudomonas putida W619 antibiotic biosynthesis monooxygenase YP_001747648.1 864683 R 390235 CDS YP_001747649.1 170719961 6109692 865155..865745 1 NC_010501.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN0714 probable nitroreductase or quinone reductase; NAD(P)H dehydrogenase 865745 6109692 PputW619_0775 Pseudomonas putida W619 NAD(P)H dehydrogenase YP_001747649.1 865155 D 390235 CDS YP_001747650.1 170719962 6109693 865835..866731 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 866731 6109693 PputW619_0776 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747650.1 865835 D 390235 CDS YP_001747651.1 170719963 6109694 866849..868516 1 NC_010501.1 KEGG: pen:PSEEN0716 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 868516 6109694 PputW619_0777 Pseudomonas putida W619 gamma-glutamyltransferase YP_001747651.1 866849 D 390235 CDS YP_001747652.1 170719964 6109695 complement(868646..870565) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0717 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 870565 6109695 PputW619_0778 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001747652.1 868646 R 390235 CDS YP_001747653.1 170719965 6109696 complement(870753..871637) 1 NC_010501.1 PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: pen:PSEEN4786 zinc-dependent peptidase (neutral); hypothetical protein 871637 6109696 PputW619_0779 Pseudomonas putida W619 hypothetical protein YP_001747653.1 870753 R 390235 CDS YP_001747654.1 170719966 6109697 871826..872545 1 NC_010501.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pen:PSEEN4784 protocatechuate 3,4-dioxygenase beta chain (3,4-PCD); protocatechuate 3,4-dioxygenase subunit beta 872545 6109697 PputW619_0780 Pseudomonas putida W619 protocatechuate 3,4-dioxygenase subunit beta YP_001747654.1 871826 D 390235 CDS YP_001747655.1 170719967 6109698 872556..873161 1 NC_010501.1 KEGG: pen:PSEEN4783 protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD); TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 873161 6109698 PputW619_0781 Pseudomonas putida W619 protocatechuate 3,4-dioxygenase subunit alpha YP_001747655.1 872556 D 390235 CDS YP_001747656.1 170719968 6109699 complement(873196..873630) 1 NC_010501.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN4782 hypothetical protein; cupin 873630 6109699 PputW619_0782 Pseudomonas putida W619 cupin YP_001747656.1 873196 R 390235 CDS YP_001747657.1 170719969 6109700 complement(873735..874640) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4781 transcriptional regulator, LysR family; LysR family transcriptional regulator 874640 6109700 PputW619_0783 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747657.1 873735 R 390235 CDS YP_001747658.1 170719970 6109701 complement(874699..875784) 1 NC_010501.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 875784 6109701 PputW619_0784 Pseudomonas putida W619 tRNA (uracil-5-)-methyltransferase YP_001747658.1 874699 R 390235 CDS YP_001747659.1 170719971 6109702 complement(875781..877076) 1 NC_010501.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4779 transporter; xanthine/uracil/vitamin C permease 877076 6109702 PputW619_0785 Pseudomonas putida W619 xanthine/uracil/vitamin C permease YP_001747659.1 875781 R 390235 CDS YP_001747660.1 170719972 6109703 complement(877231..878451) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4778 transporter, MFS family; major facilitator transporter 878451 6109703 PputW619_0786 Pseudomonas putida W619 major facilitator transporter YP_001747660.1 877231 R 390235 CDS YP_001747661.1 170719973 6109704 878798..880234 1 NC_010501.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I 880234 6109704 PputW619_0787 Pseudomonas putida W619 cytochrome bd ubiquinol oxidase subunit I YP_001747661.1 878798 D 390235 CDS YP_001747662.1 170719974 6109705 880238..881245 1 NC_010501.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: pen:PSEEN4776 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II 881245 6109705 PputW619_0788 Pseudomonas putida W619 cytochrome d ubiquinol oxidase subunit II YP_001747662.1 880238 D 390235 CDS YP_001747663.1 170719975 6109706 881257..881409 1 NC_010501.1 KEGG: pen:PSEEN4775 hypothetical protein; hypothetical protein 881409 6109706 PputW619_0789 Pseudomonas putida W619 hypothetical protein YP_001747663.1 881257 D 390235 CDS YP_001747664.1 170719976 6109707 complement(881442..882566) 1 NC_010501.1 PFAM: methyltransferase small; KEGG: pen:PSEEN4774 nucleotide methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 882566 6109707 PputW619_0790 Pseudomonas putida W619 rRNA (guanine-N(2)-)-methyltransferase YP_001747664.1 881442 R 390235 CDS YP_001747665.1 170719977 6109708 complement(882659..883369) 1 NC_010501.1 PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: pen:PSEEN4773 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 883369 6109708 PputW619_0791 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001747665.1 882659 R 390235 CDS YP_001747666.1 170719978 6109709 883581..884357 1 NC_010501.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4772 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 884357 6109709 PputW619_0792 Pseudomonas putida W619 oxidoreductase FAD/NAD(P)-binding subunit YP_001747666.1 883581 D 390235 CDS YP_001747667.1 170719979 6109710 complement(884434..884853) 1 NC_010501.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 884853 mscL 6109710 mscL Pseudomonas putida W619 large-conductance mechanosensitive channel YP_001747667.1 884434 R 390235 CDS YP_001747668.1 170719980 6109711 884965..886398 1 NC_010501.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 886398 6109711 PputW619_0794 Pseudomonas putida W619 DNA repair protein RadA YP_001747668.1 884965 D 390235 CDS YP_001747669.1 170719981 6109712 complement(886495..888012) 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0801 xanthine/uracil permease; xanthine permease 888012 6109712 PputW619_0795 Pseudomonas putida W619 xanthine permease YP_001747669.1 886495 R 390235 CDS YP_001747670.1 170719982 6109713 complement(888276..888641) 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN0802 hypothetical protein; type IV pilus assembly PilZ 888641 6109713 PputW619_0796 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001747670.1 888276 R 390235 CDS YP_001747671.1 170719983 6109714 complement(888754..889389) 1 NC_010501.1 PFAM: chitin-binding domain 3 protein; KEGG: fal:FRAAL0124 putative chitin-binding protein (partial match); chitin-binding domain-containing protein 889389 6109714 PputW619_0797 Pseudomonas putida W619 chitin-binding domain-containing protein YP_001747671.1 888754 R 390235 CDS YP_001747672.1 170719984 6109715 889706..891772 1 NC_010501.1 PFAM: carbon starvation protein CstA; KEGG: pen:PSEEN0803 carbon starvation protein CstA; carbon starvation protein CstA 891772 6109715 PputW619_0798 Pseudomonas putida W619 carbon starvation protein CstA YP_001747672.1 889706 D 390235 CDS YP_001747673.1 170719985 6109716 891786..891983 1 NC_010501.1 PFAM: protein of unknown function DUF466; KEGG: pen:PSEEN0804 hypothetical protein; hypothetical protein 891983 6109716 PputW619_0799 Pseudomonas putida W619 hypothetical protein YP_001747673.1 891786 D 390235 CDS YP_001747674.1 170719986 6109717 892056..893033 1 NC_010501.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN0805 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 893033 6109717 PputW619_0800 Pseudomonas putida W619 cobalamin synthesis protein P47K YP_001747674.1 892056 D 390235 CDS YP_001747675.1 170719987 6109718 complement(892969..894480) 1 NC_010501.1 PFAM: methylenetetrahydrofolate reductase; KEGG: pen:PSEEN4641 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 894480 6109718 PputW619_0801 Pseudomonas putida W619 methylenetetrahydrofolate reductase YP_001747675.1 892969 R 390235 CDS YP_001747676.1 170719988 6109719 894696..896996 1 NC_010501.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 896996 6109719 PputW619_0802 Pseudomonas putida W619 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001747676.1 894696 D 390235 CDS YP_001747677.1 170719989 6109720 complement(897071..898249) 1 NC_010501.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 898249 6109720 PputW619_0803 Pseudomonas putida W619 acetyl-CoA acetyltransferase YP_001747677.1 897071 R 390235 CDS YP_001747678.1 170719990 6109721 898572..899771 1 NC_010501.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 899771 6109721 PputW619_0804 Pseudomonas putida W619 trans-2-enoyl-CoA reductase YP_001747678.1 898572 D 390235 CDS YP_001747679.1 170719991 6109722 899861..900769 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4626 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 900769 6109722 PputW619_0805 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747679.1 899861 D 390235 CDS YP_001747680.1 170719992 6109723 complement(900794..901135) 1 NC_010501.1 PFAM: HopJ type III effector protein; KEGG: pfl:PFL_0946 type III effector HopPmaJ; HopJ type III effector protein 901135 6109723 PputW619_0806 Pseudomonas putida W619 HopJ type III effector protein YP_001747680.1 900794 R 390235 CDS YP_001747681.1 170719993 6109724 complement(901128..901424) 1 NC_010501.1 PFAM: protein of unknown function DUF1244; KEGG: pen:PSEEN4624 hypothetical protein; hypothetical protein 901424 6109724 PputW619_0807 Pseudomonas putida W619 hypothetical protein YP_001747681.1 901128 R 390235 CDS YP_001747682.1 170719994 6109725 complement(901434..902126) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4623 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 902126 6109725 PputW619_0808 Pseudomonas putida W619 short chain dehydrogenase YP_001747682.1 901434 R 390235 CDS YP_001747683.1 170719995 6109726 complement(902204..902764) 1 NC_010501.1 KEGG: pen:PSEEN4622 hypothetical protein; hypothetical protein 902764 6109726 PputW619_0809 Pseudomonas putida W619 hypothetical protein YP_001747683.1 902204 R 390235 CDS YP_001747684.1 170719996 6109727 902983..903915 1 NC_010501.1 PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator 903915 6109727 PputW619_0810 Pseudomonas putida W619 MerR family transcriptional regulator YP_001747684.1 902983 D 390235 CDS YP_001747685.1 170719997 6109728 complement(903900..904517) 1 NC_010501.1 KEGG: pen:PSEEN4621 hypothetical protein; hypothetical protein 904517 6109728 PputW619_0811 Pseudomonas putida W619 hypothetical protein YP_001747685.1 903900 R 390235 CDS YP_001747686.1 170719998 6109729 complement(904564..905022) 1 NC_010501.1 KEGG: pfl:PFL_0954 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 905022 6109729 PputW619_0812 Pseudomonas putida W619 putative PAS/PAC sensor protein YP_001747686.1 904564 R 390235 CDS YP_001747687.1 170719999 6109730 905106..905561 1 NC_010501.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 905561 6109730 PputW619_0813 Pseudomonas putida W619 flavodoxin YP_001747687.1 905106 D 390235 CDS YP_001747688.1 170720000 6109731 905767..906672 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4616 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 906672 6109731 PputW619_0814 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747688.1 905767 D 390235 CDS YP_001747689.1 170720001 6109732 906786..907706 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4615 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 907706 6109732 PputW619_0815 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001747689.1 906786 D 390235 CDS YP_001747690.1 170720002 6109733 complement(908004..908786) 1 NC_010501.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN4613 transcriptional regulator, IclR family; IclR family transcriptional regulator 908786 6109733 PputW619_0816 Pseudomonas putida W619 IclR family transcriptional regulator YP_001747690.1 908004 R 390235 CDS YP_001747691.1 170720003 6109734 908900..910201 1 NC_010501.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 910201 6109734 PputW619_0817 Pseudomonas putida W619 homogentisate 1,2-dioxygenase YP_001747691.1 908900 D 390235 CDS YP_001747692.1 170720004 6109735 910205..911497 1 NC_010501.1 KEGG: pen:PSEEN4611 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 911497 6109735 PputW619_0818 Pseudomonas putida W619 fumarylacetoacetase YP_001747692.1 910205 D 390235 CDS YP_001747693.1 170720005 6109736 911510..912142 1 NC_010501.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4610 maleylacetoacetate isomerase; maleylacetoacetate isomerase 912142 6109736 PputW619_0819 Pseudomonas putida W619 maleylacetoacetate isomerase YP_001747693.1 911510 D 390235 CDS YP_001747694.1 170720006 6109737 complement(912136..912942) 1 NC_010501.1 KEGG: pen:PSEEN4608 hypothetical protein; hypothetical protein 912942 6109737 PputW619_0820 Pseudomonas putida W619 hypothetical protein YP_001747694.1 912136 R 390235 CDS YP_001747695.1 170720007 6109738 913068..914087 1 NC_010501.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: pen:PSEEN4606 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 914087 6109738 PputW619_0821 Pseudomonas putida W619 Glu/Leu/Phe/Val dehydrogenase YP_001747695.1 913068 D 390235 CDS YP_001747696.1 170720008 6109739 complement(914115..914378) 1 NC_010501.1 PFAM: YebG family protein; KEGG: pen:PSEEN4605 hypothetical protein; hypothetical protein 914378 6109739 PputW619_0822 Pseudomonas putida W619 hypothetical protein YP_001747696.1 914115 R 390235 CDS YP_001747697.1 170720009 6109740 914606..914890 1 NC_010501.1 KEGG: pen:PSEEN4603 hypothetical protein; hypothetical protein 914890 6109740 PputW619_0823 Pseudomonas putida W619 hypothetical protein YP_001747697.1 914606 D 390235 CDS YP_001747698.1 170720010 6109741 914928..915401 1 NC_010501.1 PFAM: phosphate-starvation-inducible E; KEGG: pen:PSEEN4603 hypothetical protein; phosphate-starvation-inducible E 915401 6109741 PputW619_0824 Pseudomonas putida W619 phosphate-starvation-inducible E YP_001747698.1 914928 D 390235 CDS YP_001747699.1 170720011 6109742 915538..916704 1 NC_010501.1 KEGG: sbn:Sbal195_0804 hypothetical protein; hypothetical protein 916704 6109742 PputW619_0825 Pseudomonas putida W619 hypothetical protein YP_001747699.1 915538 D 390235 CDS YP_001747700.1 170720012 6109743 916712..917440 1 NC_010501.1 KEGG: pat:Patl_0675 hypothetical protein; hypothetical protein 917440 6109743 PputW619_0826 Pseudomonas putida W619 hypothetical protein YP_001747700.1 916712 D 390235 CDS YP_001747701.1 170720013 6109744 complement(917559..918251) 1 NC_010501.1 hypothetical protein 918251 6109744 PputW619_0827 Pseudomonas putida W619 hypothetical protein YP_001747701.1 917559 R 390235 CDS YP_001747702.1 170720014 6109745 918998..919864 1 NC_010501.1 hypothetical protein 919864 6109745 PputW619_0828 Pseudomonas putida W619 hypothetical protein YP_001747702.1 918998 D 390235 CDS YP_001747703.1 170720015 6109746 919880..920251 1 NC_010501.1 hypothetical protein 920251 6109746 PputW619_0829 Pseudomonas putida W619 hypothetical protein YP_001747703.1 919880 D 390235 CDS YP_001747704.1 170720016 6109747 920304..920969 1 NC_010501.1 hypothetical protein 920969 6109747 PputW619_0830 Pseudomonas putida W619 hypothetical protein YP_001747704.1 920304 D 390235 CDS YP_001747705.1 170720017 6109748 921112..921609 1 NC_010501.1 hypothetical protein 921609 6109748 PputW619_0831 Pseudomonas putida W619 hypothetical protein YP_001747705.1 921112 D 390235 CDS YP_001747706.1 170720018 6109749 complement(922274..923641) 1 NC_010501.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: bcz:pE33L54_0050 relaxase; relaxase/mobilization nuclease family protein 923641 6109749 PputW619_0832 Pseudomonas putida W619 relaxase/mobilization nuclease family protein YP_001747706.1 922274 R 390235 CDS YP_001747707.1 170720019 6109750 complement(923692..924060) 1 NC_010501.1 PFAM: mobilisation protein; mobilisation protein 924060 6109750 PputW619_0833 Pseudomonas putida W619 mobilisation protein YP_001747707.1 923692 R 390235 CDS YP_001747708.1 170720020 6109751 complement(924117..924464) 1 NC_010501.1 hypothetical protein 924464 6109751 PputW619_0834 Pseudomonas putida W619 hypothetical protein YP_001747708.1 924117 R 390235 CDS YP_001747709.1 170720021 6109752 complement(924824..926470) 1 NC_010501.1 PFAM: Resolvase domain; KEGG: mlo:mlr4668 site-specific recombinase; resolvase domain-containing protein 926470 6109752 PputW619_0835 Pseudomonas putida W619 resolvase domain-containing protein YP_001747709.1 924824 R 390235 CDS YP_001747710.1 170720022 6109753 926583..926882 1 NC_010501.1 KEGG: pen:PSEEN4603 hypothetical protein; hypothetical protein 926882 6109753 PputW619_0836 Pseudomonas putida W619 hypothetical protein YP_001747710.1 926583 D 390235 CDS YP_001747711.1 170720023 6109754 complement(926886..927176) 1 NC_010501.1 KEGG: pen:PSEEN4602 hypothetical protein; hypothetical protein 927176 6109754 PputW619_0837 Pseudomonas putida W619 hypothetical protein YP_001747711.1 926886 R 390235 CDS YP_001747712.1 170720024 6109755 927352..929307 1 NC_010501.1 KEGG: pen:PSEEN0657 hypothetical protein; hypothetical protein 929307 6109755 PputW619_0838 Pseudomonas putida W619 hypothetical protein YP_001747712.1 927352 D 390235 CDS YP_001747713.1 170720025 6109756 complement(929292..931937) 1 NC_010501.1 KEGG: pen:PSEEN0656 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 931937 6109756 PputW619_0839 Pseudomonas putida W619 PAS/PAC sensor signal transduction histidine kinase YP_001747713.1 929292 R 390235 CDS YP_001747714.1 170720026 6109757 complement(931934..932374) 1 NC_010501.1 PFAM: TadE family protein; KEGG: pen:PSEEN0655 hypothetical protein; TadE family protein 932374 6109757 PputW619_0840 Pseudomonas putida W619 TadE family protein YP_001747714.1 931934 R 390235 CDS YP_001747715.1 170720027 6109758 932444..932884 1 NC_010501.1 PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV 932884 6109758 PputW619_0841 Pseudomonas putida W619 peptidase A24A prepilin type IV YP_001747715.1 932444 D 390235 CDS YP_001747716.1 170720028 6109759 complement(932900..933163) 1 NC_010501.1 KEGG: pen:PSEEN0652 hypothetical protein; hypothetical protein 933163 6109759 PputW619_0842 Pseudomonas putida W619 hypothetical protein YP_001747716.1 932900 R 390235 CDS YP_001747717.1 170720029 6109760 complement(933179..933880) 1 NC_010501.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0651 hypothetical protein; hypothetical protein 933880 6109760 PputW619_0843 Pseudomonas putida W619 hypothetical protein YP_001747717.1 933179 R 390235 CDS YP_001747718.1 170720030 6109761 complement(933891..934778) 1 NC_010501.1 PFAM: type II secretion system protein; KEGG: pen:PSEEN0650 type II/IV secretion system membrane protein; type II secretion system protein 934778 6109761 PputW619_0844 Pseudomonas putida W619 type II secretion system protein YP_001747718.1 933891 R 390235 CDS YP_001747719.1 170720031 6109762 complement(934781..935662) 1 NC_010501.1 PFAM: type II secretion system protein; KEGG: pen:PSEEN0649 type II/IV secretion system membrane protein; type II secretion system protein 935662 6109762 PputW619_0845 Pseudomonas putida W619 type II secretion system protein YP_001747719.1 934781 R 390235 CDS YP_001747720.1 170720032 6109763 complement(935659..936915) 1 NC_010501.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN0648 type II/IV secretion system protein E; type II secretion system protein E 936915 6109763 PputW619_0846 Pseudomonas putida W619 type II secretion system protein E YP_001747720.1 935659 R 390235 CDS YP_001747721.1 170720033 6109764 complement(936912..938102) 1 NC_010501.1 KEGG: pen:PSEEN0647 hypothetical protein; hypothetical protein 938102 6109764 PputW619_0847 Pseudomonas putida W619 hypothetical protein YP_001747721.1 936912 R 390235 CDS YP_001747722.1 170720034 6109765 complement(938099..939358) 1 NC_010501.1 PFAM: type II and III secretion system protein; KEGG: pen:PSEEN0646 type II/IV secretion system protein D; type II and III secretion system protein 939358 6109765 PputW619_0848 Pseudomonas putida W619 type II and III secretion system protein YP_001747722.1 938099 R 390235 CDS YP_001747723.1 170720035 6109766 complement(939376..940323) 1 NC_010501.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pen:PSEEN0645 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 940323 6109766 PputW619_0849 Pseudomonas putida W619 Flp pilus assembly protein CpaB YP_001747723.1 939376 R 390235 CDS YP_001747724.1 170720036 6109767 940618..940797 1 NC_010501.1 PFAM: Flp/Fap pilin component; KEGG: pen:PSEEN0642 hypothetical protein; Flp/Fap pilin component 940797 6109767 PputW619_0850 Pseudomonas putida W619 Flp/Fap pilin component YP_001747724.1 940618 D 390235 CDS YP_001747725.1 170720037 6109768 940846..941256 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN0641 response regulator; response regulator receiver protein 941256 6109768 PputW619_0851 Pseudomonas putida W619 response regulator receiver protein YP_001747725.1 940846 D 390235 CDS YP_001747726.1 170720038 6109769 complement(941326..941673) 1 NC_010501.1 KEGG: pen:PSEEN4601 hypothetical protein; hypothetical protein 941673 6109769 PputW619_0852 Pseudomonas putida W619 hypothetical protein YP_001747726.1 941326 R 390235 CDS YP_001747727.1 170720039 6109770 941949..942254 1 NC_010501.1 KEGG: pen:PSEEN4570 hypothetical protein; hypothetical protein 942254 6109770 PputW619_0853 Pseudomonas putida W619 hypothetical protein YP_001747727.1 941949 D 390235 CDS YP_001747728.1 170720040 6109771 942251..943831 1 NC_010501.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4569 hypothetical protein; PepSY-associated TM helix domain-containing protein 943831 6109771 PputW619_0854 Pseudomonas putida W619 PepSY-associated TM helix domain-containing protein YP_001747728.1 942251 D 390235 CDS YP_001747729.1 170720041 6109772 943825..944151 1 NC_010501.1 KEGG: pen:PSEEN4568 hypothetical protein; hypothetical protein 944151 6109772 PputW619_0855 Pseudomonas putida W619 hypothetical protein YP_001747729.1 943825 D 390235 CDS YP_001747730.1 170720042 6109773 944207..944704 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4567 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 944704 6109773 PputW619_0856 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001747730.1 944207 D 390235 CDS YP_001747731.1 170720043 6109774 944701..945687 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN4566 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 945687 6109774 PputW619_0857 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001747731.1 944701 D 390235 CDS YP_001747732.1 170720044 6109775 945805..948195 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4565 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 948195 6109775 PputW619_0858 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001747732.1 945805 D 390235 CDS YP_001747733.1 170720045 6109776 complement(948192..949067) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4564 transcriptional regulator, AraC family; AraC family transcriptional regulator 949067 6109776 PputW619_0859 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747733.1 948192 R 390235 CDS YP_001747734.1 170720046 6109777 949284..950180 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4563 hypothetical protein; hypothetical protein 950180 6109777 PputW619_0860 Pseudomonas putida W619 hypothetical protein YP_001747734.1 949284 D 390235 CDS YP_001747735.1 170720047 6109778 950270..951790 1 NC_010501.1 KEGG: pfo:Pfl_4560 hypothetical protein; hypothetical protein 951790 6109778 PputW619_0861 Pseudomonas putida W619 hypothetical protein YP_001747735.1 950270 D 390235 CDS YP_001747736.1 170720048 6109779 951784..952155 1 NC_010501.1 PFAM: GtrA family protein; KEGG: sfv:SFV_0258 bactoprenol-linked glucose translocase; GtrA family protein 952155 6109779 PputW619_0862 Pseudomonas putida W619 GtrA family protein YP_001747736.1 951784 D 390235 CDS YP_001747737.1 170720049 6109780 952152..953090 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: sec:SC4084 putative phage glycosyltransferase; ribonuclease III 953090 6109780 PputW619_0863 Pseudomonas putida W619 ribonuclease III YP_001747737.1 952152 D 390235 CDS YP_001747738.1 170720050 6109781 complement(953131..954105) 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4562 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 954105 6109781 PputW619_0864 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001747738.1 953131 R 390235 CDS YP_001747739.1 170720051 6109782 complement(954232..955179) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4561 transcriptional regulator, LysR family; LysR family transcriptional regulator 955179 6109782 PputW619_0865 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747739.1 954232 R 390235 CDS YP_001747740.1 170720052 6109783 955358..956887 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4560 fusaric acid resistance protein; RND efflux system outer membrane lipoprotein 956887 6109783 PputW619_0866 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001747740.1 955358 D 390235 CDS YP_001747741.1 170720053 6109784 956884..959061 1 NC_010501.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN4559 fusaric acid resistance protein; fusaric acid resistance protein region 959061 6109784 PputW619_0867 Pseudomonas putida W619 fusaric acid resistance protein region YP_001747741.1 956884 D 390235 CDS YP_001747742.1 170720054 6109785 959051..959266 1 NC_010501.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN4558 hypothetical protein; hypothetical protein 959266 6109785 PputW619_0868 Pseudomonas putida W619 hypothetical protein YP_001747742.1 959051 D 390235 CDS YP_001747743.1 170720055 6109786 959277..960146 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4557 HlyD family secretion protein; secretion protein HlyD family protein 960146 6109786 PputW619_0869 Pseudomonas putida W619 secretion protein HlyD family protein YP_001747743.1 959277 D 390235 CDS YP_001747744.1 170720056 6109787 complement(960169..960615) 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pen:PSEEN4556 universal stress protein family; UspA domain-containing protein 960615 6109787 PputW619_0870 Pseudomonas putida W619 UspA domain-containing protein YP_001747744.1 960169 R 390235 CDS YP_001747745.1 170720057 6109788 960883..961791 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4555 transcriptional regulator, LysR family; LysR family transcriptional regulator 961791 6109788 PputW619_0871 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747745.1 960883 D 390235 CDS YP_001747746.1 170720058 6109789 961927..963468 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4554 multidrug efflux MFS transporter; major facilitator transporter 963468 6109789 PputW619_0872 Pseudomonas putida W619 major facilitator transporter YP_001747746.1 961927 D 390235 CDS YP_001747747.1 170720059 6109790 963496..964557 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4553 multidrug efflux MFS membrane fusion protein; secretion protein HlyD family protein 964557 6109790 PputW619_0873 Pseudomonas putida W619 secretion protein HlyD family protein YP_001747747.1 963496 D 390235 CDS YP_001747748.1 170720060 6109791 964554..966005 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4552 multidrug efflux MFS outer membrane protein; RND efflux system outer membrane lipoprotein 966005 6109791 PputW619_0874 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001747748.1 964554 D 390235 CDS YP_001747749.1 170720061 6109792 966022..966432 1 NC_010501.1 KEGG: ilo:IL0083 short chain dehydrogenase/reductase family protein; short chain dehydrogenase/reductase family protein 966432 6109792 PputW619_0875 Pseudomonas putida W619 short chain dehydrogenase/reductase family protein YP_001747749.1 966022 D 390235 CDS YP_001747750.1 170720062 6109793 complement(966382..967206) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4551 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 967206 6109793 PputW619_0876 Pseudomonas putida W619 short chain dehydrogenase YP_001747750.1 966382 R 390235 CDS YP_001747751.1 170720063 6109794 complement(967356..967820) 1 NC_010501.1 KEGG: pen:PSEEN4547 hypothetical protein; hypothetical protein 967820 6109794 PputW619_0877 Pseudomonas putida W619 hypothetical protein YP_001747751.1 967356 R 390235 CDS YP_001747752.1 170720064 6109795 complement(967960..969414) 1 NC_010501.1 KEGG: pen:PSEEN4546 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 969414 6109795 PputW619_0878 Pseudomonas putida W619 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001747752.1 967960 R 390235 CDS YP_001747753.1 170720065 6109796 complement(969452..970099) 1 NC_010501.1 KEGG: pen:PSEEN4545 alginate O-acetyltransferase AlgF; alginate O-acetyltransferase AlgF 970099 6109796 PputW619_0879 Pseudomonas putida W619 alginate O-acetyltransferase AlgF YP_001747753.1 969452 R 390235 CDS YP_001747754.1 170720066 6109797 complement(970121..971278) 1 NC_010501.1 KEGG: pen:PSEEN4544 alginate O-acetylation protein AlgJ precursor; alginate O-acetylation protein AlgJ 971278 6109797 PputW619_0880 Pseudomonas putida W619 alginate O-acetylation protein AlgJ YP_001747754.1 970121 R 390235 CDS YP_001747755.1 170720067 6109798 complement(971290..972750) 1 NC_010501.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pen:PSEEN4543 alginate O-acetylation protein AlgI; membrane bound O-acyl transferase MBOAT family protein 972750 6109798 PputW619_0881 Pseudomonas putida W619 membrane bound O-acyl transferase MBOAT family protein YP_001747755.1 971290 R 390235 CDS YP_001747756.1 170720068 6109799 complement(972966..974069) 1 NC_010501.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 974069 algL 6109799 algL Pseudomonas putida W619 poly(beta-D-mannuronate) lyase YP_001747756.1 972966 R 390235 CDS YP_001747757.1 170720069 6109800 complement(974077..975516) 1 NC_010501.1 KEGG: pen:PSEEN4541 alginate biosynthesis protein AlgX; alginate biosynthesis protein AlgX 975516 6109800 PputW619_0883 Pseudomonas putida W619 alginate biosynthesis protein AlgX YP_001747757.1 974077 R 390235 CDS YP_001747758.1 170720070 6109801 complement(975530..977089) 1 NC_010501.1 SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pen:PSEEN4540 alginate-C5-mannuronan-epimerase AlgG; carbohydrate-binding and sugar hydrolysis protein 977089 6109801 PputW619_0884 Pseudomonas putida W619 carbohydrate-binding and sugar hydrolysis protein YP_001747758.1 975530 R 390235 CDS YP_001747759.1 170720071 6109802 complement(977109..978587) 1 NC_010501.1 KEGG: pen:PSEEN4539 outer membrane protein AlgE; outer membrane protein AlgE 978587 6109802 PputW619_0885 Pseudomonas putida W619 outer membrane protein AlgE YP_001747759.1 977109 R 390235 CDS YP_001747760.1 170720072 6109803 complement(978584..980011) 1 NC_010501.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4538 alginate biosynthesis precursor AlgK; Sel1 domain-containing protein 980011 6109803 PputW619_0886 Pseudomonas putida W619 Sel1 domain-containing protein YP_001747760.1 978584 R 390235 CDS YP_001747761.1 170720073 6109804 complement(980024..981190) 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN4537 alginate biosynthesis protein Alg44; type IV pilus assembly PilZ 981190 6109804 PputW619_0887 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001747761.1 980024 R 390235 CDS YP_001747762.1 170720074 6109805 complement(981228..982718) 1 NC_010501.1 KEGG: pen:PSEEN4536 glycosyl transferase Alg8; glycosyl transferase Alg8 982718 6109805 PputW619_0888 Pseudomonas putida W619 glycosyl transferase Alg8 YP_001747762.1 981228 R 390235 CDS YP_001747763.1 170720075 6109806 complement(982777..984093) 1 NC_010501.1 KEGG: pen:PSEEN4535 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 984093 6109806 PputW619_0889 Pseudomonas putida W619 nucleotide sugar dehydrogenase YP_001747763.1 982777 R 390235 CDS YP_001747764.1 170720076 6109807 985020..985460 1 NC_010501.1 KEGG: plu:plu2640 hypothetical protein; hypothetical protein 985460 6109807 PputW619_0890 Pseudomonas putida W619 hypothetical protein YP_001747764.1 985020 D 390235 CDS YP_001747765.1 170720077 6109808 985577..986371 1 NC_010501.1 KEGG: pst:PSPTO_0243 hypothetical protein; hypothetical protein 986371 6109808 PputW619_0891 Pseudomonas putida W619 hypothetical protein YP_001747765.1 985577 D 390235 CDS YP_001747766.1 170720078 6109809 986368..987033 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2947 ABC transporter, ATP-binding protein; ABC transporter-like protein 987033 6109809 PputW619_0892 Pseudomonas putida W619 ABC transporter-like protein YP_001747766.1 986368 D 390235 CDS YP_001747767.1 170720079 6109810 987026..988195 1 NC_010501.1 PFAM: protein of unknown function DUF214; KEGG: plu:plu2647 unnamed protein product; highly similar to permease of ABC transporter; hypothetical protein 988195 6109810 PputW619_0893 Pseudomonas putida W619 hypothetical protein YP_001747767.1 987026 D 390235 CDS YP_001747768.1 170720080 6109811 988188..989651 1 NC_010501.1 PFAM: outer membrane efflux protein; KEGG: plu:plu2646 hypothetical protein; outer membrane efflux protein 989651 6109811 PputW619_0894 Pseudomonas putida W619 outer membrane efflux protein YP_001747768.1 988188 D 390235 CDS YP_001747769.1 170720081 6109812 989644..990861 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: plu:plu2645 hypothetical protein; secretion protein HlyD family protein 990861 6109812 PputW619_0895 Pseudomonas putida W619 secretion protein HlyD family protein YP_001747769.1 989644 D 390235 CDS YP_001747770.1 170720082 6109813 complement(990930..991709) 1 NC_010501.1 PFAM: protein of unknown function DUF328; KEGG: pen:PSEEN4534 hypothetical protein; hypothetical protein 991709 6109813 PputW619_0896 Pseudomonas putida W619 hypothetical protein YP_001747770.1 990930 R 390235 CDS YP_001747771.1 170720083 6109814 991846..992973 1 NC_010501.1 PFAM: polysaccharide deacetylase; KEGG: pen:PSEEN4533 polysaccharide deacetylase family protein; polysaccharide deacetylase 992973 6109814 PputW619_0897 Pseudomonas putida W619 polysaccharide deacetylase YP_001747771.1 991846 D 390235 CDS YP_001747772.1 170720084 6109815 993255..994649 1 NC_010501.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pen:PSEEN4531 PhoH family protein; PhoH family protein 994649 6109815 PputW619_0898 Pseudomonas putida W619 PhoH family protein YP_001747772.1 993255 D 390235 CDS YP_001747773.1 170720085 6109816 994745..995215 1 NC_010501.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 995215 moaC 6109816 moaC Pseudomonas putida W619 molybdenum cofactor biosynthesis protein MoaC YP_001747773.1 994745 D 390235 CDS YP_001747774.1 170720086 6109817 995215..995460 1 NC_010501.1 TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein; KEGG: pen:PSEEN4529 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 995460 6109817 PputW619_0900 Pseudomonas putida W619 molybdopterin converting factor subunit 1 YP_001747774.1 995215 D 390235 CDS YP_001747775.1 170720087 6109818 995463..995909 1 NC_010501.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pen:PSEEN4528 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE protein 995909 6109818 PputW619_0901 Pseudomonas putida W619 molybdopterin biosynthesis MoaE protein YP_001747775.1 995463 D 390235 CDS YP_001747776.1 170720088 6109819 complement(996046..997497) 1 NC_010501.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 997497 6109819 PputW619_0902 Pseudomonas putida W619 ATP-dependent RNA helicase RhlB YP_001747776.1 996046 R 390235 CDS YP_001747777.1 170720089 6109820 complement(997598..998254) 1 NC_010501.1 PFAM: phospholipase/Carboxylesterase; KEGG: pen:PSEEN4526 carboxylesterase; carboxylesterase 998254 6109820 PputW619_0903 Pseudomonas putida W619 carboxylesterase YP_001747777.1 997598 R 390235 CDS YP_001747778.1 170720090 6109821 998585..999613 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN4525 general amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 999613 6109821 PputW619_0904 Pseudomonas putida W619 extracellular solute-binding protein YP_001747778.1 998585 D 390235 CDS YP_001747779.1 170720091 6109822 999681..1000859 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4524 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1000859 6109822 PputW619_0905 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001747779.1 999681 D 390235 CDS YP_001747780.1 170720092 6109823 1000870..1001967 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4523 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1001967 6109823 PputW619_0906 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001747780.1 1000870 D 390235 CDS YP_001747781.1 170720093 6109824 1001978..1002742 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4522 general amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 1002742 6109824 PputW619_0907 Pseudomonas putida W619 ABC transporter-like protein YP_001747781.1 1001978 D 390235 CDS YP_001747782.1 170720094 6109825 complement(1002842..1004002) 1 NC_010501.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pen:PSEEN4521 HtrA-like serine protease AlgW; 2-alkenal reductase 1004002 6109825 PputW619_0908 Pseudomonas putida W619 2-alkenal reductase YP_001747782.1 1002842 R 390235 CDS YP_001747783.1 170720095 6109826 1004161..1004919 1 NC_010501.1 PFAM: protein of unknown function DUF34; KEGG: pen:PSEEN4520 hypothetical protein; hypothetical protein 1004919 6109826 PputW619_0909 Pseudomonas putida W619 hypothetical protein YP_001747783.1 1004161 D 390235 CDS YP_001747784.1 170720096 6109827 1005146..1006063 1 NC_010501.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1006063 6109827 PputW619_0910 Pseudomonas putida W619 sulfate adenylyltransferase subunit 2 YP_001747784.1 1005146 D 390235 CDS YP_001747785.1 170720097 6109828 1006079..1007980 1 NC_010501.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1007980 6109828 PputW619_0911 Pseudomonas putida W619 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_001747785.1 1006079 D 390235 CDS YP_001747786.1 170720098 6109829 complement(1008052..1008789) 1 NC_010501.1 KEGG: pfo:Pfl_5397 S-type pyocin; S-type pyocin 1008789 6109829 PputW619_0912 Pseudomonas putida W619 S-type pyocin YP_001747786.1 1008052 R 390235 CDS YP_001747787.1 170720099 6109830 1009477..1010001 1 NC_010501.1 hypothetical protein 1010001 6109830 PputW619_0913 Pseudomonas putida W619 hypothetical protein YP_001747787.1 1009477 D 390235 CDS YP_001747788.1 170720100 6109831 complement(1010178..1010657) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4516 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1010657 6109831 PputW619_0914 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001747788.1 1010178 R 390235 CDS YP_001747789.1 170720101 6109832 1010785..1011978 1 NC_010501.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 1011978 6109832 PputW619_0915 Pseudomonas putida W619 methionine gamma-lyase YP_001747789.1 1010785 D 390235 CDS YP_001747790.1 170720102 6109833 complement(1012164..1012601) 1 NC_010501.1 PFAM: protein of unknown function DUF1043; KEGG: pen:PSEEN4513 hypothetical protein; hypothetical protein 1012601 6109833 PputW619_0916 Pseudomonas putida W619 hypothetical protein YP_001747790.1 1012164 R 390235 CDS YP_001747791.1 170720103 6109834 1012729..1013373 1 NC_010501.1 KEGG: pen:PSEEN4512 hypothetical protein; hypothetical protein 1013373 6109834 PputW619_0917 Pseudomonas putida W619 hypothetical protein YP_001747791.1 1012729 D 390235 CDS YP_001747792.1 170720104 6109835 1013399..1014748 1 NC_010501.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1014748 6109835 PputW619_0918 Pseudomonas putida W619 tryptophanyl-tRNA synthetase YP_001747792.1 1013399 D 390235 CDS YP_001747793.1 170720105 6109836 1014909..1015928 1 NC_010501.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN4510 ATPase; AFG1 family ATPase 1015928 6109836 PputW619_0919 Pseudomonas putida W619 AFG1 family ATPase YP_001747793.1 1014909 D 390235 CDS YP_001747794.1 170720106 6109837 complement(1016088..1017092) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4509 transcriptional regulator, AraC family; AraC family transcriptional regulator 1017092 6109837 PputW619_0920 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747794.1 1016088 R 390235 CDS YP_001747795.1 170720107 6109838 complement(1017232..1018272) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN4508 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 1018272 6109838 PputW619_0921 Pseudomonas putida W619 aldo/keto reductase YP_001747795.1 1017232 R 390235 CDS YP_001747796.1 170720108 6109839 1018530..1018958 1 NC_010501.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1018958 rplM 6109839 rplM Pseudomonas putida W619 50S ribosomal protein L13 YP_001747796.1 1018530 D 390235 CDS YP_001747797.1 170720109 6109840 1018973..1019365 1 NC_010501.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1019365 rpsI 6109840 rpsI Pseudomonas putida W619 30S ribosomal protein S9 YP_001747797.1 1018973 D 390235 CDS YP_001747798.1 170720110 6109841 1019629..1020222 1 NC_010501.1 KEGG: pen:PSEEN4505 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1020222 6109841 PputW619_0924 Pseudomonas putida W619 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001747798.1 1019629 D 390235 CDS YP_001747799.1 170720111 6109842 1020219..1021433 1 NC_010501.1 PFAM: Cytochrome b/b6 domain; KEGG: pen:PSEEN4504 ubiquinol--cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 1021433 6109842 PputW619_0925 Pseudomonas putida W619 cytochrome b/b6 domain-containing protein YP_001747799.1 1020219 D 390235 CDS YP_001747800.1 170720112 6109843 1021433..1022212 1 NC_010501.1 KEGG: pen:PSEEN4503 ubiquinol--cytochrome c reductase, cytochrome c1; ubiquinol--cytochrome c reductase, cytochrome c1 1022212 6109843 PputW619_0926 Pseudomonas putida W619 ubiquinol--cytochrome c reductase, cytochrome c1 YP_001747800.1 1021433 D 390235 CDS YP_001747801.1 170720113 6109844 1022333..1022956 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4502 stringent starvation protein A; glutathione S-transferase domain-containing protein 1022956 6109844 PputW619_0927 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001747801.1 1022333 D 390235 CDS YP_001747802.1 170720114 6109845 1022967..1023398 1 NC_010501.1 PFAM: Stringent starvation protein B; KEGG: pen:PSEEN4501 stringent starvation protein B; ClpXP protease specificity-enhancing factor 1023398 6109845 PputW619_0928 Pseudomonas putida W619 ClpXP protease specificity-enhancing factor YP_001747802.1 1022967 D 390235 CDS YP_001747803.1 170720115 6109846 complement(1023449..1023667) 1 NC_010501.1 PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN4500 hypothetical protein; hypothetical protein 1023667 6109846 PputW619_0929 Pseudomonas putida W619 hypothetical protein YP_001747803.1 1023449 R 390235 CDS YP_001747804.1 170720116 6109847 complement(1023747..1024325) 1 NC_010501.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN4499 lipoprotein; transport-associated 1024325 6109847 PputW619_0930 Pseudomonas putida W619 transport-associated YP_001747804.1 1023747 R 390235 CDS YP_001747805.1 170720117 6109848 complement(1024322..1024915) 1 NC_010501.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1024915 6109848 PputW619_0931 Pseudomonas putida W619 phosphoheptose isomerase YP_001747805.1 1024322 R 390235 CDS YP_001747806.1 170720118 6109849 complement(1025002..1025373) 1 NC_010501.1 PFAM: protein of unknown function UPF0102; KEGG: pen:PSEEN4497 hypothetical protein; hypothetical protein 1025373 6109849 PputW619_0932 Pseudomonas putida W619 hypothetical protein YP_001747806.1 1025002 R 390235 CDS YP_001747807.1 170720119 6109850 complement(1025373..1027190) 1 NC_010501.1 PFAM: LppC family lipoprotein; KEGG: pen:PSEEN4496 lipoprotein LppC; LppC family lipoprotein 1027190 6109850 PputW619_0933 Pseudomonas putida W619 LppC family lipoprotein YP_001747807.1 1025373 R 390235 CDS YP_001747808.1 170720120 6109851 1027378..1028253 1 NC_010501.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN4495 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 1028253 6109851 PputW619_0934 Pseudomonas putida W619 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001747808.1 1027378 D 390235 CDS YP_001747809.1 170720121 6109853 1029002..1029457 1 NC_010501.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1029457 6109853 PputW619_0935 Pseudomonas putida W619 cell division protein MraZ YP_001747809.1 1029002 D 390235 CDS YP_001747810.1 170720122 6109854 1029454..1030401 1 NC_010501.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pen:PSEEN4493 S-adenosylmethionine methyltransferase MraW; S-adenosyl-methyltransferase MraW 1030401 mraW 6109854 mraW Pseudomonas putida W619 S-adenosyl-methyltransferase MraW YP_001747810.1 1029454 D 390235 CDS YP_001747811.1 170720123 6109855 1030398..1030691 1 NC_010501.1 PFAM: cell division protein FtsL; KEGG: pen:PSEEN4492 cell division protein FtsL; cell division protein FtsL 1030691 6109855 PputW619_0937 Pseudomonas putida W619 cell division protein FtsL YP_001747811.1 1030398 D 390235 CDS YP_001747812.1 170720124 6109856 1030688..1032424 1 NC_010501.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pen:PSEEN4491 penicillin-binding protein; peptidoglycan glycosyltransferase 1032424 6109856 PputW619_0938 Pseudomonas putida W619 peptidoglycan glycosyltransferase YP_001747812.1 1030688 D 390235 CDS YP_001747813.1 170720125 6109857 1032421..1033911 1 NC_010501.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1033911 murE 6109857 murE Pseudomonas putida W619 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001747813.1 1032421 D 390235 CDS YP_001747814.1 170720126 6109858 1033904..1035271 1 NC_010501.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN4489 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme); UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1035271 6109858 PputW619_0940 Pseudomonas putida W619 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001747814.1 1033904 D 390235 CDS YP_001747815.1 170720127 6109859 1035271..1036353 1 NC_010501.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1036353 mraY 6109859 mraY Pseudomonas putida W619 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001747815.1 1035271 D 390235 CDS YP_001747816.1 170720128 6109860 1036360..1037706 1 NC_010501.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1037706 murD 6109860 murD Pseudomonas putida W619 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001747816.1 1036360 D 390235 CDS YP_001747817.1 170720129 6109861 1037703..1038917 1 NC_010501.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pen:PSEEN4486 cell division protein, stabililzes FtsZ ring; cell division protein FtsW 1038917 6109861 PputW619_0943 Pseudomonas putida W619 cell division protein FtsW YP_001747817.1 1037703 D 390235 CDS YP_001747818.1 170720130 6109862 1038907..1039986 1 NC_010501.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1039986 murG 6109862 murG Pseudomonas putida W619 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001747818.1 1038907 D 390235 CDS YP_001747819.1 170720131 6109863 1039979..1041427 1 NC_010501.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1041427 murC 6109863 murC Pseudomonas putida W619 UDP-N-acetylmuramate--L-alanine ligase YP_001747819.1 1039979 D 390235 CDS YP_001747820.1 170720132 6109864 1041424..1042380 1 NC_010501.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1042380 ddl 6109864 ddl Pseudomonas putida W619 D-alanine--D-alanine ligase YP_001747820.1 1041424 D 390235 CDS YP_001747821.1 170720133 6109865 1042387..1043256 1 NC_010501.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pen:PSEEN4482 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 1043256 6109865 PputW619_0947 Pseudomonas putida W619 polypeptide-transport-associated domain-containing protein YP_001747821.1 1042387 D 390235 CDS YP_001747822.1 170720134 6109866 1043271..1044527 1 NC_010501.1 PFAM: cell division protein FtsA; KEGG: pen:PSEEN4481 cell division protein FtsA; cell division protein FtsA 1044527 6109866 PputW619_0948 Pseudomonas putida W619 cell division protein FtsA YP_001747822.1 1043271 D 390235 CDS YP_001747823.1 170720135 6109867 1044583..1045779 1 NC_010501.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1045779 6109867 PputW619_0949 Pseudomonas putida W619 cell division protein FtsZ YP_001747823.1 1044583 D 390235 CDS YP_001747824.1 170720136 6109868 1045892..1046803 1 NC_010501.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1046803 lpxC 6109868 lpxC Pseudomonas putida W619 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001747824.1 1045892 D 390235 CDS YP_001747825.1 170720137 6109869 complement(1046879..1047334) 1 NC_010501.1 KEGG: pen:PSEEN4478 hypothetical protein; hypothetical protein 1047334 6109869 PputW619_0951 Pseudomonas putida W619 hypothetical protein YP_001747825.1 1046879 R 390235 CDS YP_001747826.1 170720138 6109870 1047646..1050381 1 NC_010501.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1050381 secA 6109870 secA Pseudomonas putida W619 preprotein translocase subunit SecA YP_001747826.1 1047646 D 390235 CDS YP_001747827.1 170720139 6109871 1050571..1051788 1 NC_010501.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1051788 argJ 6109871 argJ Pseudomonas putida W619 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001747827.1 1050571 D 390235 CDS YP_001747828.1 170720140 6109872 1051908..1052540 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4475 glutathione S-transferase; glutathione S-transferase domain-containing protein 1052540 6109872 PputW619_0954 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001747828.1 1051908 D 390235 CDS YP_001747829.1 170720141 6109873 1052537..1053481 1 NC_010501.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pen:PSEEN4474 hydrolase MutT/NUDIX family/thiamine monophosphate synthase; hypothetical protein 1053481 6109873 PputW619_0955 Pseudomonas putida W619 hypothetical protein YP_001747829.1 1052537 D 390235 CDS YP_001747830.1 170720142 6109874 complement(1053521..1054087) 1 NC_010501.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pen:PSEEN4473 Cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP--cobalamin adenosyltransferase 1054087 6109874 PputW619_0956 Pseudomonas putida W619 ATP--cobalamin adenosyltransferase YP_001747830.1 1053521 R 390235 CDS YP_001747831.1 170720143 6109875 complement(1054089..1056119) 1 NC_010501.1 KEGG: pen:PSEEN4472 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1056119 6109875 PputW619_0957 Pseudomonas putida W619 multi-sensor signal transduction histidine kinase YP_001747831.1 1054089 R 390235 CDS YP_001747832.1 170720144 6109876 complement(1056157..1057074) 1 NC_010501.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1057074 6109876 PputW619_0958 Pseudomonas putida W619 2-dehydropantoate 2-reductase YP_001747832.1 1056157 R 390235 CDS YP_001747833.1 170720145 6109877 1057177..1057662 1 NC_010501.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1057662 6109877 PputW619_0959 Pseudomonas putida W619 putative nucleotide-binding protein YP_001747833.1 1057177 D 390235 CDS YP_001747834.1 170720146 6109878 1057777..1058619 1 NC_010501.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN4468 ion small-conductance mechanosensitive channel; mechanosensitive ion channel MscS 1058619 6109878 PputW619_0960 Pseudomonas putida W619 mechanosensitive ion channel MscS YP_001747834.1 1057777 D 390235 CDS YP_001747835.1 170720147 6109879 1058841..1060085 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4467 multidrug efflux MFS transporter; major facilitator transporter 1060085 6109879 PputW619_0961 Pseudomonas putida W619 major facilitator transporter YP_001747835.1 1058841 D 390235 CDS YP_001747836.1 170720148 6109880 complement(1060103..1061650) 1 NC_010501.1 TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4466 muropeptide permease AmpG; AmpG-like permease 1061650 6109880 PputW619_0962 Pseudomonas putida W619 AmpG-like permease YP_001747836.1 1060103 R 390235 CDS YP_001747837.1 170720149 6109881 complement(1061694..1062047) 1 NC_010501.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN4465 methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1062047 6109881 PputW619_0963 Pseudomonas putida W619 methylated-DNA--protein-cysteine methyltransferase YP_001747837.1 1061694 R 390235 CDS YP_001747838.1 170720150 6109882 1062200..1063210 1 NC_010501.1 KEGG: pen:PSEEN4464 hypothetical protein; hypothetical protein 1063210 6109882 PputW619_0964 Pseudomonas putida W619 hypothetical protein YP_001747838.1 1062200 D 390235 CDS YP_001747839.1 170720151 6109883 1063352..1064083 1 NC_010501.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN4463 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1064083 6109883 PputW619_0965 Pseudomonas putida W619 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001747839.1 1063352 D 390235 CDS YP_001747840.1 170720152 6109884 1064150..1064611 1 NC_010501.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 1064611 fxsA 6109884 fxsA Pseudomonas putida W619 FxsA protein YP_001747840.1 1064150 D 390235 CDS YP_001747841.1 170720153 6109885 1064852..1065145 1 NC_010501.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1065145 groES 6109885 groES Pseudomonas putida W619 co-chaperonin GroES YP_001747841.1 1064852 D 390235 CDS YP_001747842.1 170720154 6109886 1065194..1066834 1 NC_010501.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1066834 groEL 6109886 groEL Pseudomonas putida W619 chaperonin GroEL YP_001747842.1 1065194 D 390235 CDS YP_001747843.1 170720155 6109887 1067002..1067685 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4458 response regulator ColR; two component transcriptional regulator 1067685 6109887 PputW619_0969 Pseudomonas putida W619 two component transcriptional regulator YP_001747843.1 1067002 D 390235 CDS YP_001747844.1 170720156 6109888 1067675..1068985 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4457 sensor histidine kinase ColS; integral membrane sensor signal transduction histidine kinase 1068985 6109888 PputW619_0970 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001747844.1 1067675 D 390235 CDS YP_001747845.1 170720157 6109889 1069093..1069773 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4456 hypothetical protein; type 11 methyltransferase 1069773 6109889 PputW619_0971 Pseudomonas putida W619 type 11 methyltransferase YP_001747845.1 1069093 D 390235 CDS YP_001747846.1 170720158 6109890 1069780..1070478 1 NC_010501.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN4455 lipopolysaccharide kinase InaA; lipopolysaccharide kinase 1070478 6109890 PputW619_0972 Pseudomonas putida W619 lipopolysaccharide kinase YP_001747846.1 1069780 D 390235 CDS YP_001747847.1 170720159 6109891 1070478..1070705 1 NC_010501.1 KEGG: pen:PSEEN4454 hypothetical protein; hypothetical protein 1070705 6109891 PputW619_0973 Pseudomonas putida W619 hypothetical protein YP_001747847.1 1070478 D 390235 CDS YP_001747848.1 170720160 6109892 complement(1070768..1073812) 1 NC_010501.1 MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 1073812 6109892 PputW619_0974 Pseudomonas putida W619 multidrug efflux protein YP_001747848.1 1070768 R 390235 CDS YP_001747849.1 170720161 6109893 complement(1073826..1074974) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1110 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit 1074974 6109893 PputW619_0975 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001747849.1 1073826 R 390235 CDS YP_001747850.1 170720162 6109894 complement(1075118..1076215) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1115 hypothetical protein; hypothetical protein 1076215 6109894 PputW619_0976 Pseudomonas putida W619 hypothetical protein YP_001747850.1 1075118 R 390235 CDS YP_001747851.1 170720163 6109895 complement(1076218..1077282) 1 NC_010501.1 KEGG: pen:PSEEN1116 lipoprotein; lipoprotein 1077282 6109895 PputW619_0977 Pseudomonas putida W619 lipoprotein YP_001747851.1 1076218 R 390235 CDS YP_001747852.1 170720164 6109896 complement(1077300..1078727) 1 NC_010501.1 PFAM: protein of unknown function DUF1111; KEGG: pen:PSEEN1117 hypothetical protein; hypothetical protein 1078727 6109896 PputW619_0978 Pseudomonas putida W619 hypothetical protein YP_001747852.1 1077300 R 390235 CDS YP_001747853.1 170720165 6109897 complement(1078986..1080323) 1 NC_010501.1 KEGG: pen:PSEEN1119 hypothetical protein; hypothetical protein 1080323 6109897 PputW619_0979 Pseudomonas putida W619 hypothetical protein YP_001747853.1 1078986 R 390235 CDS YP_001747854.1 170720166 6109898 complement(1080471..1082522) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN1120 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain); diguanylate cyclase/phosphodiesterase 1082522 6109898 PputW619_0980 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001747854.1 1080471 R 390235 CDS YP_001747855.1 170720167 6109899 complement(1082795..1083391) 1 NC_010501.1 PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1121 superoxide dismutase; superoxide dismutase 1083391 6109899 PputW619_0981 Pseudomonas putida W619 superoxide dismutase YP_001747855.1 1082795 R 390235 CDS YP_001747856.1 170720168 6109900 complement(1083610..1084209) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN1123 transporter, LysE family; lysine exporter protein LysE/YggA 1084209 6109900 PputW619_0982 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001747856.1 1083610 R 390235 CDS YP_001747857.1 170720169 6109901 1084300..1085190 1 NC_010501.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1085190 6109901 PputW619_0983 Pseudomonas putida W619 chromosome replication initiation inhibitor protein YP_001747857.1 1084300 D 390235 CDS YP_001747858.1 170720170 6109902 1085237..1086232 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pen:PSEEN1125 nucleoside-diphosphate-sugar epimerases; NAD-dependent epimerase/dehydratase 1086232 6109902 PputW619_0984 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001747858.1 1085237 D 390235 CDS YP_001747859.1 170720171 6109903 1086320..1087147 1 NC_010501.1 KEGG: pen:PSEEN1126 hypothetical protein; hypothetical protein 1087147 6109903 PputW619_0985 Pseudomonas putida W619 hypothetical protein YP_001747859.1 1086320 D 390235 CDS YP_001747860.1 170720172 6109904 complement(1087280..1088329) 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1127 xenobiotic reductase B; NADH:flavin oxidoreductase 1088329 6109904 PputW619_0986 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001747860.1 1087280 R 390235 CDS YP_001747861.1 170720173 6109905 complement(1088348..1088650) 1 NC_010501.1 PFAM: regulatory protein ArsR; KEGG: pen:PSEEN1128 transcriptional regulator (ArsR family); ArsR family transcriptional regulator 1088650 6109905 PputW619_0987 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001747861.1 1088348 R 390235 CDS YP_001747862.1 170720174 6109906 1088803..1089384 1 NC_010501.1 PFAM: protein of unknown function DUF479; KEGG: pen:PSEEN1129 hypothetical protein; hypothetical protein 1089384 6109906 PputW619_0988 Pseudomonas putida W619 hypothetical protein YP_001747862.1 1088803 D 390235 CDS YP_001747863.1 170720175 6109907 complement(1089406..1090194) 1 NC_010501.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN1136 acyltransferase; phospholipid/glycerol acyltransferase 1090194 6109907 PputW619_0989 Pseudomonas putida W619 phospholipid/glycerol acyltransferase YP_001747863.1 1089406 R 390235 CDS YP_001747864.1 170720176 6109908 complement(1090194..1090949) 1 NC_010501.1 KEGG: pen:PSEEN1137 hypothetical protein; hypothetical protein 1090949 6109908 PputW619_0990 Pseudomonas putida W619 hypothetical protein YP_001747864.1 1090194 R 390235 CDS YP_001747865.1 170720177 6109909 1091099..1091986 1 NC_010501.1 KEGG: pen:PSEEN1138 hypothetical protein; hypothetical protein 1091986 6109909 PputW619_0991 Pseudomonas putida W619 hypothetical protein YP_001747865.1 1091099 D 390235 CDS YP_001747866.1 170720178 6109910 1092051..1093133 1 NC_010501.1 PFAM: beta-lactamase; KEGG: pen:PSEEN1139 beta-lactamase; beta-lactamase 1093133 6109910 PputW619_0992 Pseudomonas putida W619 beta-lactamase YP_001747866.1 1092051 D 390235 CDS YP_001747867.1 170720179 6109911 1093130..1093426 1 NC_010501.1 KEGG: pen:PSEEN1140 hypothetical protein; hypothetical protein 1093426 6109911 PputW619_0993 Pseudomonas putida W619 hypothetical protein YP_001747867.1 1093130 D 390235 CDS YP_001747868.1 170720180 6109912 1093471..1094052 1 NC_010501.1 PFAM: YceI family protein; KEGG: pen:PSEEN1141 hypothetical protein; hypothetical protein 1094052 6109912 PputW619_0994 Pseudomonas putida W619 hypothetical protein YP_001747868.1 1093471 D 390235 CDS YP_001747869.1 170720181 6109913 1094054..1095211 1 NC_010501.1 KEGG: pen:PSEEN1142 phospholipase; phospholipase 1095211 6109913 PputW619_0995 Pseudomonas putida W619 phospholipase YP_001747869.1 1094054 D 390235 CDS YP_001747870.1 170720182 6109914 1095264..1095842 1 NC_010501.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN1143 protease C56; PfpI family intracellular peptidase 1095842 6109914 PputW619_0996 Pseudomonas putida W619 PfpI family intracellular peptidase YP_001747870.1 1095264 D 390235 CDS YP_001747871.1 170720183 6109915 complement(1095885..1096283) 1 NC_010501.1 KEGG: pmy:Pmen_3272 protein of unknown function DUF1486; hypothetical protein 1096283 6109915 PputW619_0997 Pseudomonas putida W619 hypothetical protein YP_001747871.1 1095885 R 390235 CDS YP_001747872.1 170720184 6109916 1096399..1096989 1 NC_010501.1 KEGG: pen:PSEEN1144 hypothetical protein; hypothetical protein 1096989 6109916 PputW619_0998 Pseudomonas putida W619 hypothetical protein YP_001747872.1 1096399 D 390235 CDS YP_001747873.1 170720185 6109917 1096986..1097858 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3270 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1097858 6109917 PputW619_0999 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001747873.1 1096986 D 390235 CDS YP_001747874.1 170720186 6109918 complement(1097888..1099411) 1 NC_010501.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pen:PSEEN1145 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha 1099411 6109918 PputW619_1000 Pseudomonas putida W619 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha YP_001747874.1 1097888 R 390235 CDS YP_001747875.1 170720187 6109919 1099655..1100581 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN1146 ferredoxin reductase; hypothetical protein 1100581 6109919 PputW619_1001 Pseudomonas putida W619 hypothetical protein YP_001747875.1 1099655 D 390235 CDS YP_001747876.1 170720188 6109920 complement(1100636..1102090) 1 NC_010501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1102090 6109920 PputW619_1002 Pseudomonas putida W619 pyruvate kinase YP_001747876.1 1100636 R 390235 CDS YP_001747877.1 170720189 6109921 1102262..1102648 1 NC_010501.1 KEGG: pen:PSEEN1148 hypothetical protein; hypothetical protein 1102648 6109921 PputW619_1003 Pseudomonas putida W619 hypothetical protein YP_001747877.1 1102262 D 390235 CDS YP_001747878.1 170720190 6109922 1102772..1103131 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN1149 hypothetical protein; type IV pilus assembly PilZ 1103131 6109922 PputW619_1004 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001747878.1 1102772 D 390235 CDS YP_001747879.1 170720191 6109923 1103178..1104614 1 NC_010501.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1104614 sbcB 6109923 sbcB Pseudomonas putida W619 exonuclease I YP_001747879.1 1103178 D 390235 CDS YP_001747880.1 170720192 6109924 complement(1104695..1105072) 1 NC_010501.1 KEGG: pen:PSEEN1151 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit 1105072 6109924 PputW619_1006 Pseudomonas putida W619 transcriptional regulator MvaT, P16 subunit YP_001747880.1 1104695 R 390235 CDS YP_001747881.1 170720193 6109925 1105368..1106219 1 NC_010501.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1106219 purU 6109925 purU Pseudomonas putida W619 formyltetrahydrofolate deformylase YP_001747881.1 1105368 D 390235 CDS YP_001747882.1 170720194 6109926 complement(1106408..1107400) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4434 hypothetical protein; hypothetical protein 1107400 6109926 PputW619_1008 Pseudomonas putida W619 hypothetical protein YP_001747882.1 1106408 R 390235 CDS YP_001747883.1 170720195 6109927 complement(1107397..1108161) 1 NC_010501.1 KEGG: pau:PA14_56040 putative deacetylase; putative deacetylase 1108161 6109927 PputW619_1009 Pseudomonas putida W619 putative deacetylase YP_001747883.1 1107397 R 390235 CDS YP_001747884.1 170720196 6109928 complement(1108154..1109266) 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pfo:Pfl_4432 glycosyl transferase, group 1; glycosyl transferase group 1 protein 1109266 6109928 PputW619_1010 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001747884.1 1108154 R 390235 CDS YP_001747885.1 170720197 6109929 complement(1109454..1111328) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1154 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 1111328 6109929 PputW619_1011 Pseudomonas putida W619 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001747885.1 1109454 R 390235 CDS YP_001747886.1 170720198 6109930 1111494..1112969 1 NC_010501.1 PFAM: protein of unknown function DUF853 NPT hydrolase putative; SMART: AAA ATPase; KEGG: pen:PSEEN1155 hypothetical protein; hypothetical protein 1112969 6109930 PputW619_1012 Pseudomonas putida W619 hypothetical protein YP_001747886.1 1111494 D 390235 CDS YP_001747887.1 170720199 6109931 complement(1113074..1114546) 1 NC_010501.1 PFAM: phosphate transporter; KEGG: pen:PSEEN1157 low-affinity inorganic phosphate transporter; phosphate transporter 1114546 6109931 PputW619_1013 Pseudomonas putida W619 phosphate transporter YP_001747887.1 1113074 R 390235 CDS YP_001747888.1 170720200 6109932 complement(1114864..1115064) 1 NC_010501.1 KEGG: pen:PSEEN1158 hypothetical protein; hypothetical protein 1115064 6109932 PputW619_1014 Pseudomonas putida W619 hypothetical protein YP_001747888.1 1114864 R 390235 CDS YP_001747889.1 170720201 6109933 1115532..1116407 1 NC_010501.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN1160 regulatory protein for pca operon (activator); IclR family transcriptional regulator 1116407 6109933 PputW619_1015 Pseudomonas putida W619 IclR family transcriptional regulator YP_001747889.1 1115532 D 390235 CDS YP_001747890.1 170720202 6109934 1116733..1118076 1 NC_010501.1 TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1162 4-hydroxybenzoate transporter (MFS superfamily); benzoate transport 1118076 6109934 PputW619_1016 Pseudomonas putida W619 benzoate transport YP_001747890.1 1116733 D 390235 CDS YP_001747891.1 170720203 6109935 1118300..1119502 1 NC_010501.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 1119502 6109935 PputW619_1017 Pseudomonas putida W619 beta-ketoadipyl CoA thiolase YP_001747891.1 1118300 D 390235 CDS YP_001747892.1 170720204 6109936 1119691..1120980 1 NC_010501.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1166 dicarboxylic acid transport protein; alpha-ketoglutarate permease (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 1120980 6109936 PputW619_1018 Pseudomonas putida W619 major facilitator superfamily metabolite/H(+) symporter YP_001747892.1 1119691 D 390235 CDS YP_001747893.1 170720205 6109937 1120990..1122342 1 NC_010501.1 Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 1122342 6109937 PputW619_1019 Pseudomonas putida W619 3-carboxy-cis,cis-muconate cycloisomerase YP_001747893.1 1120990 D 390235 CDS YP_001747894.1 170720206 6109938 1122354..1123145 1 NC_010501.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase 1123145 6109938 PputW619_1020 Pseudomonas putida W619 3-oxoadipate enol-lactonase YP_001747894.1 1122354 D 390235 CDS YP_001747895.1 170720207 6109939 1123156..1123554 1 NC_010501.1 KEGG: pen:PSEEN1169 gamma-carboxymuconolactone decarboxylase (CMD); TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 1123554 6109939 PputW619_1021 Pseudomonas putida W619 4-carboxymuconolactone decarboxylase YP_001747895.1 1123156 D 390235 CDS YP_001747896.1 170720208 6109940 complement(1123679..1124191) 1 NC_010501.1 PFAM: protein of unknown function DUF962; KEGG: pen:PSEEN4366 hypothetical protein; hypothetical protein 1124191 6109940 PputW619_1022 Pseudomonas putida W619 hypothetical protein YP_001747896.1 1123679 R 390235 CDS YP_001747897.1 170720209 6109941 complement(1124347..1125600) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin 1125600 6109941 PputW619_1023 Pseudomonas putida W619 outer membrane porin YP_001747897.1 1124347 R 390235 CDS YP_001747898.1 170720210 6109942 complement(1125858..1127312) 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4362 multidrug/solvent efflux outer membrane protein TtgC, RND family; RND efflux system outer membrane lipoprotein 1127312 6109942 PputW619_1024 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001747898.1 1125858 R 390235 CDS YP_001747899.1 170720211 6109943 complement(1127309..1130461) 1 NC_010501.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4361 multidrug/solvent RND transporter TtgB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 1130461 6109943 PputW619_1025 Pseudomonas putida W619 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001747899.1 1127309 R 390235 CDS YP_001747900.1 170720212 6109944 complement(1130465..1131619) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4360 multidrug/solvent efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 1131619 6109944 PputW619_1026 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001747900.1 1130465 R 390235 CDS YP_001747901.1 170720213 6109945 1131875..1132507 1 NC_010501.1 PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: pen:PSEEN4359 transcriptional regulator TtgR for multidrug efflux pump (TetR/AcrR family); TetR family transcriptional regulator 1132507 6109945 PputW619_1027 Pseudomonas putida W619 TetR family transcriptional regulator YP_001747901.1 1131875 D 390235 CDS YP_001747902.1 170720214 6109946 complement(1132579..1134030) 1 NC_010501.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4357 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 1134030 6109946 PputW619_1028 Pseudomonas putida W619 EmrB/QacA family drug resistance transporter YP_001747902.1 1132579 R 390235 CDS YP_001747903.1 170720215 6109947 1134410..1135279 1 NC_010501.1 KEGG: pen:PSEEN4356 carboxyphosphonoenolpyruvate phosphonomutase; carboxyphosphonoenolpyruvate phosphonomutase 1135279 6109947 PputW619_1029 Pseudomonas putida W619 carboxyphosphonoenolpyruvate phosphonomutase YP_001747903.1 1134410 D 390235 CDS YP_001747904.1 170720216 6109948 complement(1135300..1135473) 1 NC_010501.1 KEGG: pen:PSEEN4355 hypothetical protein; hypothetical protein 1135473 6109948 PputW619_1030 Pseudomonas putida W619 hypothetical protein YP_001747904.1 1135300 R 390235 CDS YP_001747905.1 170720217 6109949 complement(1135567..1136475) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4354 transcriptional regulator, LysR family; LysR family transcriptional regulator 1136475 6109949 PputW619_1031 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747905.1 1135567 R 390235 CDS YP_001747906.1 170720218 6109950 1136580..1137455 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4353 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 1137455 6109950 PputW619_1032 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001747906.1 1136580 D 390235 CDS YP_001747907.1 170720219 6109951 1137483..1138097 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; KEGG: pen:PSEEN4352 hypothetical protein; NmrA family protein 1138097 6109951 PputW619_1033 Pseudomonas putida W619 NmrA family protein YP_001747907.1 1137483 D 390235 CDS YP_001747908.1 170720220 6109952 complement(1138091..1138969) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4351 transcriptional regulator, LysR family; LysR family transcriptional regulator 1138969 6109952 PputW619_1034 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747908.1 1138091 R 390235 CDS YP_001747909.1 170720221 6109953 1139083..1140720 1 NC_010501.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pen:PSEEN4350 acetolactate synthase, large subunit; hypothetical protein 1140720 6109953 PputW619_1035 Pseudomonas putida W619 hypothetical protein YP_001747909.1 1139083 D 390235 CDS YP_001747910.1 170720222 6109954 complement(1140733..1141653) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pen:PSEEN4349 transcriptional regulator, AraC family; AraC family transcriptional regulator 1141653 6109954 PputW619_1036 Pseudomonas putida W619 AraC family transcriptional regulator YP_001747910.1 1140733 R 390235 CDS YP_001747911.1 170720223 6109955 1141856..1142149 1 NC_010501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4348 hypothetical protein; antibiotic biosynthesis monooxygenase 1142149 6109955 PputW619_1037 Pseudomonas putida W619 antibiotic biosynthesis monooxygenase YP_001747911.1 1141856 D 390235 CDS YP_001747912.1 170720224 6109956 1142206..1142439 1 NC_010501.1 KEGG: pen:PSEEN4347 hypothetical protein; hypothetical protein 1142439 6109956 PputW619_1038 Pseudomonas putida W619 hypothetical protein YP_001747912.1 1142206 D 390235 CDS YP_001747913.1 170720225 6109957 complement(1142440..1143045) 1 NC_010501.1 KEGG: pen:PSEEN4346 hypothetical protein; hypothetical protein 1143045 6109957 PputW619_1039 Pseudomonas putida W619 hypothetical protein YP_001747913.1 1142440 R 390235 CDS YP_001747914.1 170720226 6109958 complement(1143162..1143488) 1 NC_010501.1 KEGG: pen:PSEEN4345 hypothetical protein; hypothetical protein 1143488 6109958 PputW619_1040 Pseudomonas putida W619 hypothetical protein YP_001747914.1 1143162 R 390235 CDS YP_001747915.1 170720227 6109959 complement(1143878..1145293) 1 NC_010501.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4342 dicarboxylate transport protein (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 1145293 6109959 PputW619_1041 Pseudomonas putida W619 major facilitator superfamily metabolite/H(+) symporter YP_001747915.1 1143878 R 390235 CDS YP_001747916.1 170720228 6109960 complement(1145474..1146808) 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN4341 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 1146808 6109960 PputW619_1042 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001747916.1 1145474 R 390235 CDS YP_001747917.1 170720229 6109961 complement(1146802..1148559) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4340 sensor histidine kinase; histidine kinase 1148559 6109961 PputW619_1043 Pseudomonas putida W619 histidine kinase YP_001747917.1 1146802 R 390235 CDS YP_001747918.1 170720230 6109962 complement(1148642..1150933) 1 NC_010501.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pen:PSEEN4339 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase family 3 1150933 6109962 PputW619_1044 Pseudomonas putida W619 glycoside hydrolase family 3 YP_001747918.1 1148642 R 390235 CDS YP_001747919.1 170720231 6109963 1151120..1151737 1 NC_010501.1 PFAM: protein of unknown function DUF477; KEGG: pen:PSEEN4338 hypothetical protein; hypothetical protein 1151737 6109963 PputW619_1045 Pseudomonas putida W619 hypothetical protein YP_001747919.1 1151120 D 390235 CDS YP_001747920.1 170720232 6109964 1151837..1153066 1 NC_010501.1 KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 1153066 6109964 PputW619_1046 Pseudomonas putida W619 hypothetical protein YP_001747920.1 1151837 D 390235 CDS YP_001747921.1 170720233 6109965 complement(1153098..1154111) 1 NC_010501.1 KEGG: pen:PSEEN4330 hypothetical protein; hypothetical protein 1154111 6109965 PputW619_1047 Pseudomonas putida W619 hypothetical protein YP_001747921.1 1153098 R 390235 CDS YP_001747922.1 170720234 6109966 1154225..1155292 1 NC_010501.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN4329 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase 1155292 6109966 PputW619_1048 Pseudomonas putida W619 glycerophosphodiester phosphodiesterase YP_001747922.1 1154225 D 390235 CDS YP_001747923.1 170720235 6109968 complement(1155577..1156467) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4319 (R)-3-hydroxydecanoyl-ACP:CoA transacylase (3-hydroxyacyl-CoA-acyl carrier protein transferase); alpha/beta hydrolase fold family protein 1156467 6109968 PputW619_1049 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747923.1 1155577 R 390235 CDS YP_001747924.1 170720236 6109969 complement(1156803..1157504) 1 NC_010501.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN4317 16S rRNA pseudouridylate 516 synthase; pseudouridine synthase 1157504 6109969 PputW619_1050 Pseudomonas putida W619 pseudouridine synthase YP_001747924.1 1156803 R 390235 CDS YP_001747925.1 170720237 6109970 complement(1157539..1157769) 1 NC_010501.1 KEGG: pen:PSEEN4316 hypothetical protein; hypothetical protein 1157769 6109970 PputW619_1051 Pseudomonas putida W619 hypothetical protein YP_001747925.1 1157539 R 390235 CDS YP_001747926.1 170720238 6109971 1158016..1158456 1 NC_010501.1 KEGG: pen:PSEEN4314 lipoprotein; lipoprotein 1158456 6109971 PputW619_1052 Pseudomonas putida W619 lipoprotein YP_001747926.1 1158016 D 390235 CDS YP_001747927.1 170720239 6109972 complement(1158486..1159592) 1 NC_010501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN4313 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1159592 6109972 PputW619_1053 Pseudomonas putida W619 enoyl-CoA hydratase/isomerase YP_001747927.1 1158486 R 390235 CDS YP_001747928.1 170720240 6109973 1159719..1160411 1 NC_010501.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1160411 6109973 PputW619_1054 Pseudomonas putida W619 uracil-DNA glycosylase YP_001747928.1 1159719 D 390235 CDS YP_001747929.1 170720241 6109974 complement(1160464..1161495) 1 NC_010501.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: pen:PSEEN4308 ammonia monooxygenase; membrane protein AbrB 1161495 6109974 PputW619_1055 Pseudomonas putida W619 membrane protein AbrB YP_001747929.1 1160464 R 390235 CDS YP_001747930.1 170720242 6109975 complement(1161488..1163002) 1 NC_010501.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: pen:PSEEN4307 tricarboxylate transport protein TctA; hypothetical protein 1163002 6109975 PputW619_1056 Pseudomonas putida W619 hypothetical protein YP_001747930.1 1161488 R 390235 CDS YP_001747931.1 170720243 6109976 complement(1163006..1163464) 1 NC_010501.1 KEGG: pen:PSEEN4306 tricarboxylate transport protein TctB; tricarboxylate transport protein TctB 1163464 6109976 PputW619_1057 Pseudomonas putida W619 tricarboxylate transport protein TctB YP_001747931.1 1163006 R 390235 CDS YP_001747932.1 170720244 6109977 complement(1163595..1164575) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4305 tricarboxylate transport protein TctC; hypothetical protein 1164575 6109977 PputW619_1058 Pseudomonas putida W619 hypothetical protein YP_001747932.1 1163595 R 390235 CDS YP_001747933.1 170720245 6109978 complement(1164607..1165896) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4304 porin, OprD family; outer membrane porin 1165896 6109978 PputW619_1059 Pseudomonas putida W619 outer membrane porin YP_001747933.1 1164607 R 390235 CDS YP_001747934.1 170720246 6109979 1166097..1166768 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4303 DNA-binding response regulator TctD; two component transcriptional regulator 1166768 6109979 PputW619_1060 Pseudomonas putida W619 two component transcriptional regulator YP_001747934.1 1166097 D 390235 CDS YP_001747935.1 170720247 6109980 1166761..1168140 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pen:PSEEN4302 sensor histidine kinase TctE; integral membrane sensor signal transduction histidine kinase 1168140 6109980 PputW619_1061 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001747935.1 1166761 D 390235 CDS YP_001747936.1 170720248 6109981 complement(1168181..1168987) 1 NC_010501.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4301 hypothetical protein; putative signal transduction protein 1168987 6109981 PputW619_1062 Pseudomonas putida W619 putative signal transduction protein YP_001747936.1 1168181 R 390235 CDS YP_001747937.1 170720249 6109982 complement(1169019..1169960) 1 NC_010501.1 KEGG: pen:PSEEN4300 hypothetical protein; hypothetical protein 1169960 6109982 PputW619_1063 Pseudomonas putida W619 hypothetical protein YP_001747937.1 1169019 R 390235 CDS YP_001747938.1 170720250 6109983 1170094..1170348 1 NC_010501.1 PFAM: protein of unknown function DUF339; KEGG: pen:PSEEN4299 hypothetical protein; hypothetical protein 1170348 6109983 PputW619_1064 Pseudomonas putida W619 hypothetical protein YP_001747938.1 1170094 D 390235 CDS YP_001747939.1 170720251 6109984 1170332..1170790 1 NC_010501.1 KEGG: pen:PSEEN4298 hypothetical protein; hypothetical protein 1170790 6109984 PputW619_1065 Pseudomonas putida W619 hypothetical protein YP_001747939.1 1170332 D 390235 CDS YP_001747940.1 170720252 6109985 complement(1170843..1172447) 1 NC_010501.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1172447 6109985 PputW619_1066 Pseudomonas putida W619 L-aspartate oxidase YP_001747940.1 1170843 R 390235 CDS YP_001747941.1 170720253 6109986 1172883..1173464 1 NC_010501.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 1173464 algU 6109986 algU Pseudomonas putida W619 RNA polymerase sigma factor AlgU YP_001747941.1 1172883 D 390235 CDS YP_001747942.1 170720254 6109987 1173496..1174086 1 NC_010501.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: pen:PSEEN4295 sigma factor AlgU negative regulatory protein MucA; anti sigma-E protein RseA 1174086 6109987 PputW619_1068 Pseudomonas putida W619 anti sigma-E protein RseA YP_001747942.1 1173496 D 390235 CDS YP_001747943.1 170720255 6109988 1174099..1175064 1 NC_010501.1 PFAM: MucB/RseB family protein; KEGG: pen:PSEEN4294 sigma factor AlgU regulatory protein MucB; sigma E regulatory protein MucB/RseB 1175064 6109988 PputW619_1069 Pseudomonas putida W619 sigma E regulatory protein MucB/RseB YP_001747943.1 1174099 D 390235 CDS YP_001747944.1 170720256 6109989 1175241..1176680 1 NC_010501.1 KEGG: pen:PSEEN4293 serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1176680 6109989 PputW619_1070 Pseudomonas putida W619 protease Do YP_001747944.1 1175241 D 390235 CDS YP_001747945.1 170720257 6109990 1176863..1178662 1 NC_010501.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1178662 6109990 PputW619_1071 Pseudomonas putida W619 GTP-binding protein LepA YP_001747945.1 1176863 D 390235 CDS YP_001747946.1 170720258 6109991 1178668..1179522 1 NC_010501.1 KEGG: pen:PSEEN4291 leader peptidase (signal peptidase I) , serine protease; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1179522 6109991 PputW619_1072 Pseudomonas putida W619 signal peptidase I YP_001747946.1 1178668 D 390235 CDS YP_001747947.1 170720259 6109992 1179684..1180373 1 NC_010501.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1180373 rnc 6109992 rnc Pseudomonas putida W619 ribonuclease III YP_001747947.1 1179684 D 390235 CDS YP_001747948.1 170720260 6109993 1180366..1181268 1 NC_010501.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1181268 era 6109993 era Pseudomonas putida W619 GTP-binding protein Era YP_001747948.1 1180366 D 390235 CDS YP_001747949.1 170720261 6109994 1181322..1182005 1 NC_010501.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1182005 recO 6109994 recO Pseudomonas putida W619 DNA repair protein RecO YP_001747949.1 1181322 D 390235 CDS YP_001747950.1 170720262 6109995 1182049..1182789 1 NC_010501.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1182789 6109995 PputW619_1076 Pseudomonas putida W619 pyridoxine 5'-phosphate synthase YP_001747950.1 1182049 D 390235 CDS YP_001747951.1 170720263 6109996 complement(1182937..1183893) 1 NC_010501.1 TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4373 methyltransferase; methyltransferase 1183893 6109996 PputW619_1077 Pseudomonas putida W619 methyltransferase YP_001747951.1 1182937 R 390235 CDS YP_001747952.1 170720264 6109997 complement(1183890..1184633) 1 NC_010501.1 TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4372 methyltransferase; methyltransferase 1184633 6109997 PputW619_1078 Pseudomonas putida W619 methyltransferase YP_001747952.1 1183890 R 390235 CDS YP_001747953.1 170720265 6109998 complement(1184723..1185115) 1 NC_010501.1 KEGG: psp:PSPPH_3942 lipoprotein, putative; putative lipoprotein 1185115 6109998 PputW619_1079 Pseudomonas putida W619 putative lipoprotein YP_001747953.1 1184723 R 390235 CDS YP_001747954.1 170720266 6109999 complement(1185224..1187650) 1 NC_010501.1 KEGG: pen:PSEEN4367 DNA-binding ATP-dependent protease La-2; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1187650 6109999 PputW619_1080 Pseudomonas putida W619 ATP-dependent protease La YP_001747954.1 1185224 R 390235 CDS YP_001747955.1 170720267 6110000 complement(1187813..1190224) 1 NC_010501.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1170 glucose dehydrogenase Gcd; PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 1190224 6110000 PputW619_1081 Pseudomonas putida W619 PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein YP_001747955.1 1187813 R 390235 CDS YP_001747956.1 170720268 6110001 complement(1190253..1191599) 1 NC_010501.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN1171 porin B precursor (outer membrane protein D1) (glucose porin); carbohydrate-selective porin OprB 1191599 6110001 PputW619_1082 Pseudomonas putida W619 carbohydrate-selective porin OprB YP_001747956.1 1190253 R 390235 CDS YP_001747957.1 170720269 6110002 complement(1191917..1193962) 1 NC_010501.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1173 TonB-dependent receptor; TonB-dependent receptor 1193962 6110002 PputW619_1083 Pseudomonas putida W619 TonB-dependent receptor YP_001747957.1 1191917 R 390235 CDS YP_001747958.1 170720270 6110003 1194132..1194353 1 NC_010501.1 KEGG: pen:PSEEN1174 hypothetical protein; hypothetical protein 1194353 6110003 PputW619_1084 Pseudomonas putida W619 hypothetical protein YP_001747958.1 1194132 D 390235 CDS YP_001747959.1 170720271 6110004 1194355..1195035 1 NC_010501.1 KEGG: pen:PSEEN1175 hypothetical protein; hypothetical protein 1195035 6110004 PputW619_1085 Pseudomonas putida W619 hypothetical protein YP_001747959.1 1194355 D 390235 CDS YP_001747960.1 170720272 6110005 complement(1195045..1195803) 1 NC_010501.1 PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN1176 iron-chelator utilization protein; FAD-binding 9 siderophore-interacting domain-containing protein 1195803 6110005 PputW619_1086 Pseudomonas putida W619 FAD-binding 9 siderophore-interacting domain-containing protein YP_001747960.1 1195045 R 390235 CDS YP_001747961.1 170720273 6110006 complement(1195796..1196341) 1 NC_010501.1 PFAM: transcriptional regulator PadR family protein; KEGG: pen:PSEEN1177 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 1196341 6110006 PputW619_1087 Pseudomonas putida W619 PadR-like family transcriptional regulator YP_001747961.1 1195796 R 390235 CDS YP_001747962.1 170720274 6110007 complement(1196431..1199568) 1 NC_010501.1 KEGG: pen:PSEEN1178 membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase 1199568 6110007 PputW619_1088 Pseudomonas putida W619 membrane carboxypeptidase YP_001747962.1 1196431 R 390235 CDS YP_001747963.1 170720275 6110008 1199962..1201380 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1179 amino acid permease; amino acid permease-associated protein 1201380 6110008 PputW619_1089 Pseudomonas putida W619 amino acid permease-associated protein YP_001747963.1 1199962 D 390235 CDS YP_001747964.1 170720276 6110009 complement(1201495..1203114) 1 NC_010501.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN1180 ferredoxin-dependent glutamate synthase; glutamate synthase 1203114 6110009 PputW619_1090 Pseudomonas putida W619 glutamate synthase YP_001747964.1 1201495 R 390235 CDS YP_001747965.1 170720277 6110010 complement(1203216..1207571) 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1182 ATP-dependent DNA helicase Lhr; DEAD/DEAH box helicase 1207571 6110010 PputW619_1091 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001747965.1 1203216 R 390235 CDS YP_001747966.1 170720278 6110011 1207607..1208020 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1208020 6110011 PputW619_1092 Pseudomonas putida W619 NUDIX hydrolase YP_001747966.1 1207607 D 390235 CDS YP_001747967.1 170720279 6110012 complement(1208004..1208921) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1184 transcriptional regulator MetR; LysR family transcriptional regulator 1208921 6110012 PputW619_1093 Pseudomonas putida W619 LysR family transcriptional regulator YP_001747967.1 1208004 R 390235 CDS YP_001747968.1 170720280 6110013 1209118..1210113 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1185 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 1210113 6110013 PputW619_1094 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001747968.1 1209118 D 390235 CDS YP_001747969.1 170720281 6110014 complement(1210143..1211471) 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN1188 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 1211471 6110014 PputW619_1095 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001747969.1 1210143 R 390235 CDS YP_001747970.1 170720282 6110015 complement(1211468..1213372) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1189 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1213372 6110015 PputW619_1096 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001747970.1 1211468 R 390235 CDS YP_001747971.1 170720283 6110016 complement(1213442..1214176) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1190 glutamate-aspartate ABC transporter, ATP-binding protein; ABC transporter-like protein 1214176 6110016 PputW619_1097 Pseudomonas putida W619 ABC transporter-like protein YP_001747971.1 1213442 R 390235 CDS YP_001747972.1 170720284 6110017 complement(1214173..1214844) 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1191 glutamate-aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1214844 6110017 PputW619_1098 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001747972.1 1214173 R 390235 CDS YP_001747973.1 170720285 6110018 complement(1214845..1215591) 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1192 glutamate/aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1215591 6110018 PputW619_1099 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001747973.1 1214845 R 390235 CDS YP_001747974.1 170720286 6110019 complement(1215734..1216651) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1193 glutamate/aspartate ABC transporter, periplasmic binding protein; extracellular solute-binding protein 1216651 6110019 PputW619_1100 Pseudomonas putida W619 extracellular solute-binding protein YP_001747974.1 1215734 R 390235 CDS YP_001747975.1 170720287 6110020 1216989..1221119 1 NC_010501.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 1221119 6110020 PputW619_1101 Pseudomonas putida W619 hypothetical protein YP_001747975.1 1216989 D 390235 CDS YP_001747976.1 170720288 6110021 complement(1221155..1222684) 1 NC_010501.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 1222684 glpD 6110021 glpD Pseudomonas putida W619 glycerol-3-phosphate dehydrogenase YP_001747976.1 1221155 R 390235 CDS YP_001747977.1 170720289 6110022 complement(1222858..1223613) 1 NC_010501.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN1196 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator 1223613 6110022 PputW619_1103 Pseudomonas putida W619 DeoR family transcriptional regulator YP_001747977.1 1222858 R 390235 CDS YP_001747978.1 170720290 6110023 complement(1223727..1225232) 1 NC_010501.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1225232 glpK 6110023 glpK Pseudomonas putida W619 glycerol kinase YP_001747978.1 1223727 R 390235 CDS YP_001747979.1 170720291 6110024 complement(1225268..1226119) 1 NC_010501.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pen:PSEEN1198 glycerol uptake facilitator protein; MIP family channel protein 1226119 6110024 PputW619_1105 Pseudomonas putida W619 MIP family channel protein YP_001747979.1 1225268 R 390235 CDS YP_001747980.1 170720292 6110025 1226420..1226890 1 NC_010501.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN1199 hypothetical protein; ybaK/ebsC protein 1226890 6110025 PputW619_1106 Pseudomonas putida W619 ybaK/ebsC protein YP_001747980.1 1226420 D 390235 CDS YP_001747981.1 170720293 6110026 complement(1226928..1228037) 1 NC_010501.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1200 ABC transporter, ATP-binding protein; ABC transporter-like protein 1228037 6110026 PputW619_1107 Pseudomonas putida W619 ABC transporter-like protein YP_001747981.1 1226928 R 390235 CDS YP_001747982.1 170720294 6110027 complement(1228034..1228954) 1 NC_010501.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1228954 6110027 PputW619_1108 Pseudomonas putida W619 ornithine carbamoyltransferase YP_001747982.1 1228034 R 390235 CDS YP_001747983.1 170720295 6110028 1229318..1231426 1 NC_010501.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1202 oxidoreductase molybdopterin-binding; molydopterin dinucleotide-binding region 1231426 6110028 PputW619_1109 Pseudomonas putida W619 molydopterin dinucleotide-binding region YP_001747983.1 1229318 D 390235 CDS YP_001747984.1 170720296 6110029 1231518..1231853 1 NC_010501.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pen:PSEEN1203 hypothetical protein; glutaredoxin-like protein 1231853 6110029 PputW619_1110 Pseudomonas putida W619 glutaredoxin-like protein YP_001747984.1 1231518 D 390235 CDS YP_001747985.1 170720297 6110030 complement(1231910..1232383) 1 NC_010501.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN1204 bacterioferritin; bacterioferritin 1232383 6110030 PputW619_1111 Pseudomonas putida W619 bacterioferritin YP_001747985.1 1231910 R 390235 CDS YP_001747986.1 170720298 6110031 complement(1232583..1232804) 1 NC_010501.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1205 bacterioferritin-associated ferredoxin Bfd; BFD/(2Fe-2S)-binding domain-containing protein 1232804 6110031 PputW619_1112 Pseudomonas putida W619 BFD/(2Fe-2S)-binding domain-containing protein YP_001747986.1 1232583 R 390235 CDS YP_001747987.1 170720299 6110032 1233018..1233620 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1206 peroxiredoxin (alkyl hydroperoxide reductase C); alkyl hydroperoxide reductase 1233620 6110032 PputW619_1113 Pseudomonas putida W619 alkyl hydroperoxide reductase YP_001747987.1 1233018 D 390235 CDS YP_001747988.1 170720300 6110033 complement(1233692..1234366) 1 NC_010501.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1234366 6110033 PputW619_1114 Pseudomonas putida W619 ribonuclease T YP_001747988.1 1233692 R 390235 CDS YP_001747989.1 170720301 6110034 complement(1234363..1235409) 1 NC_010501.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1235409 6110034 PputW619_1115 Pseudomonas putida W619 dihydroorotase YP_001747989.1 1234363 R 390235 CDS YP_001747990.1 170720302 6110035 1235540..1236514 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1209 outer membrane protein, OmpA/MotB family; OmpA/MotB domain-containing protein 1236514 6110035 PputW619_1116 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001747990.1 1235540 D 390235 CDS YP_001747991.1 170720303 6110036 1236642..1237859 1 NC_010501.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1237859 6110036 PputW619_1117 Pseudomonas putida W619 argininosuccinate synthase YP_001747991.1 1236642 D 390235 CDS YP_001747992.1 170720304 6110037 complement(1237980..1238486) 1 NC_010501.1 KEGG: pen:PSEEN1211 hypothetical protein; hypothetical protein 1238486 6110037 PputW619_1118 Pseudomonas putida W619 hypothetical protein YP_001747992.1 1237980 R 390235 CDS YP_001747993.1 170720305 6110038 1238852..1239478 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN1212 response regulator, LuxR family; two component LuxR family transcriptional regulator 1239478 6110038 PputW619_1119 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001747993.1 1238852 D 390235 CDS YP_001747994.1 170720306 6110039 complement(1239523..1239699) 1 NC_010501.1 KEGG: pen:PSEEN1213 hypothetical protein; hypothetical protein 1239699 6110039 PputW619_1120 Pseudomonas putida W619 hypothetical protein YP_001747994.1 1239523 R 390235 CDS YP_001747995.1 170720307 6110040 complement(1239803..1240441) 1 NC_010501.1 KEGG: pen:PSEEN1214 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 1240441 6110040 PputW619_1121 Pseudomonas putida W619 endonuclease III YP_001747995.1 1239803 R 390235 CDS YP_001747996.1 170720308 6110041 complement(1240446..1240970) 1 NC_010501.1 KEGG: pen:PSEEN1215 hypothetical protein; hypothetical protein 1240970 6110041 PputW619_1122 Pseudomonas putida W619 hypothetical protein YP_001747996.1 1240446 R 390235 CDS YP_001747997.1 170720309 6110042 complement(1240963..1241565) 1 NC_010501.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pen:PSEEN1216 electron transport complex protein RnfG; RnfABCDGE type electron transport complex subunit G 1241565 6110042 PputW619_1123 Pseudomonas putida W619 RnfABCDGE type electron transport complex subunit G YP_001747997.1 1240963 R 390235 CDS YP_001747998.1 170720310 6110043 complement(1241562..1242545) 1 NC_010501.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pen:PSEEN1217 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D 1242545 6110043 PputW619_1124 Pseudomonas putida W619 RnfABCDGE type electron transport complex subunit D YP_001747998.1 1241562 R 390235 CDS YP_001747999.1 170720311 6110044 complement(1242542..1243090) 1 NC_010501.1 KEGG: pen:PSEEN1219 electron transport complex protein RnfA; electron transport complex protein RnfA 1243090 6110044 PputW619_1125 Pseudomonas putida W619 electron transport complex protein RnfA YP_001747999.1 1242542 R 390235 CDS YP_001748000.1 170720312 6110045 complement(1243183..1245228) 1 NC_010501.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1245228 metG 6110045 metG Pseudomonas putida W619 methionyl-tRNA synthetase YP_001748000.1 1243183 R 390235 CDS YP_001748001.1 170720313 6110046 1245385..1246479 1 NC_010501.1 PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN1221 ATPase, Mrp family; hypothetical protein 1246479 6110046 PputW619_1127 Pseudomonas putida W619 hypothetical protein YP_001748001.1 1245385 D 390235 CDS YP_001748002.1 170720314 6110047 complement(1246673..1246882) 1 NC_010501.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1222 cold shock protein CapB; cold-shock DNA-binding domain-containing protein 1246882 6110047 PputW619_1128 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001748002.1 1246673 R 390235 CDS YP_001748003.1 170720315 6110048 1247213..1247779 1 NC_010501.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1247779 dcd 6110048 dcd Pseudomonas putida W619 deoxycytidine triphosphate deaminase YP_001748003.1 1247213 D 390235 CDS YP_001748004.1 170720316 6110049 1247878..1248105 1 NC_010501.1 KEGG: pen:PSEEN1224 hypothetical protein; hypothetical protein 1248105 6110049 PputW619_1130 Pseudomonas putida W619 hypothetical protein YP_001748004.1 1247878 D 390235 CDS YP_001748005.1 170720317 6110050 complement(1248119..1248778) 1 NC_010501.1 PFAM: metallophosphoesterase; KEGG: psb:Psyr_3881 hypothetical protein; metallophosphoesterase 1248778 6110050 PputW619_1131 Pseudomonas putida W619 metallophosphoesterase YP_001748005.1 1248119 R 390235 CDS YP_001748006.1 170720318 6110051 complement(1248775..1251228) 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: psa:PST_2663 ATP-dependent helicase, DEAD box family; DEAD/DEAH box helicase 1251228 6110051 PputW619_1132 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001748006.1 1248775 R 390235 CDS YP_001748007.1 170720319 6110052 complement(1251297..1252412) 1 NC_010501.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pen:PSEEN1225 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase 1252412 6110052 PputW619_1133 Pseudomonas putida W619 succinylglutamate desuccinylase/aspartoacylase YP_001748007.1 1251297 R 390235 CDS YP_001748008.1 170720320 6110053 complement(1252510..1254171) 1 NC_010501.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 1254171 6110053 PputW619_1134 Pseudomonas putida W619 ATP-dependent DNA ligase YP_001748008.1 1252510 R 390235 CDS YP_001748009.1 170720321 6110054 complement(1254168..1255184) 1 NC_010501.1 KEGG: pmy:Pmen_2196 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; RNA procession exonuclease-like protein 1255184 6110054 PputW619_1135 Pseudomonas putida W619 RNA procession exonuclease-like protein YP_001748009.1 1254168 R 390235 CDS YP_001748010.1 170720322 6110055 complement(1255291..1255629) 1 NC_010501.1 hypothetical protein 1255629 6110055 PputW619_1136 Pseudomonas putida W619 hypothetical protein YP_001748010.1 1255291 R 390235 CDS YP_001748011.1 170720323 6110056 complement(1255738..1258179) 1 NC_010501.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN1226 penicillin amidase; penicillin amidase 1258179 6110056 PputW619_1137 Pseudomonas putida W619 penicillin amidase YP_001748011.1 1255738 R 390235 CDS YP_001748012.1 170720324 6110057 complement(1258352..1258555) 1 NC_010501.1 PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1227 hypothetical protein; SecC motif-containing protein 1258555 6110057 PputW619_1138 Pseudomonas putida W619 SecC motif-containing protein YP_001748012.1 1258352 R 390235 CDS YP_001748013.1 170720325 6110058 complement(1258563..1259039) 1 NC_010501.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN1228 hypothetical protein; water stress/hypersensitive response domain-containing protein 1259039 6110058 PputW619_1139 Pseudomonas putida W619 water stress/hypersensitive response domain-containing protein YP_001748013.1 1258563 R 390235 CDS YP_001748014.1 170720326 6110059 complement(1259036..1259518) 1 NC_010501.1 PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1229 hypothetical protein; hypothetical protein 1259518 6110059 PputW619_1140 Pseudomonas putida W619 hypothetical protein YP_001748014.1 1259036 R 390235 CDS YP_001748015.1 170720327 6110060 complement(1259522..1260016) 1 NC_010501.1 KEGG: pen:PSEEN1230 hypothetical protein; hypothetical protein 1260016 6110060 PputW619_1141 Pseudomonas putida W619 hypothetical protein YP_001748015.1 1259522 R 390235 CDS YP_001748016.1 170720328 6110061 1260176..1260868 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1231 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 1260868 6110061 PputW619_1142 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001748016.1 1260176 D 390235 CDS YP_001748017.1 170720329 6110062 1260956..1261669 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1232 outer memebrane protein, OmpA family; OmpA/MotB domain-containing protein 1261669 6110062 PputW619_1143 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001748017.1 1260956 D 390235 CDS YP_001748018.1 170720330 6110063 1261689..1261964 1 NC_010501.1 PFAM: protein of unknown function DUF1145; KEGG: pen:PSEEN1233 hypothetical protein; hypothetical protein 1261964 6110063 PputW619_1144 Pseudomonas putida W619 hypothetical protein YP_001748018.1 1261689 D 390235 CDS YP_001748019.1 170720331 6110064 complement(1261981..1262445) 1 NC_010501.1 KEGG: pen:PSEEN1272 hypothetical protein; hypothetical protein 1262445 6110064 PputW619_1145 Pseudomonas putida W619 hypothetical protein YP_001748019.1 1261981 R 390235 CDS YP_001748020.1 170720332 6110065 1262544..1264688 1 NC_010501.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1264688 dinG 6110065 dinG Pseudomonas putida W619 ATP-dependent DNA helicase DinG YP_001748020.1 1262544 D 390235 CDS YP_001748021.1 170720333 6110066 1264770..1267037 1 NC_010501.1 KEGG: pen:PSEEN1274 hydrolase; beta-agarase 1267037 6110066 PputW619_1147 Pseudomonas putida W619 beta-agarase YP_001748021.1 1264770 D 390235 CDS YP_001748022.1 170720334 6110067 1267145..1268290 1 NC_010501.1 PFAM: beta-lactamase; KEGG: pen:PSEEN1275 beta-lactamase; beta-lactamase 1268290 6110067 PputW619_1148 Pseudomonas putida W619 beta-lactamase YP_001748022.1 1267145 D 390235 CDS YP_001748023.1 170720335 6110068 1268390..1269373 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1276 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 1269373 6110068 PputW619_1149 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001748023.1 1268390 D 390235 CDS YP_001748024.1 170720336 6110069 1269393..1270040 1 NC_010501.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1270040 6110069 PputW619_1150 Pseudomonas putida W619 pyridoxamine 5'-phosphate oxidase YP_001748024.1 1269393 D 390235 CDS YP_001748025.1 170720337 6110070 1270241..1270705 1 NC_010501.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1279 lipoprotein; 17 kDa surface antigen 1270705 6110070 PputW619_1151 Pseudomonas putida W619 17 kDa surface antigen YP_001748025.1 1270241 D 390235 CDS YP_001748026.1 170720338 6110071 complement(1270843..1272450) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1280 FAD-dependent dehydrogenases; FAD dependent oxidoreductase 1272450 6110071 PputW619_1152 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001748026.1 1270843 R 390235 CDS YP_001748027.1 170720339 6110072 complement(1272554..1273228) 1 NC_010501.1 KEGG: pen:PSEEN1281 lipoprotein; lipoprotein 1273228 6110072 PputW619_1153 Pseudomonas putida W619 lipoprotein YP_001748027.1 1272554 R 390235 CDS YP_001748028.1 170720340 6110073 complement(1273453..1274154) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1282 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 1274154 6110073 PputW619_1154 Pseudomonas putida W619 ABC transporter-like protein YP_001748028.1 1273453 R 390235 CDS YP_001748029.1 170720341 6110074 complement(1274155..1274922) 1 NC_010501.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 1274922 livG 6110074 livG Pseudomonas putida W619 leucine/isoleucine/valine transporter ATP-binding subunit YP_001748029.1 1274155 R 390235 CDS YP_001748030.1 170720342 6110075 complement(1274919..1276175) 1 NC_010501.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 1276175 livM 6110075 livM Pseudomonas putida W619 leucine/isoleucine/valine transporter permease subunit YP_001748030.1 1274919 R 390235 CDS YP_001748031.1 170720343 6110076 complement(1276172..1277095) 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN1285 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 1277095 6110076 PputW619_1157 Pseudomonas putida W619 inner-membrane translocator YP_001748031.1 1276172 R 390235 CDS YP_001748032.1 170720344 6110077 complement(1277282..1278397) 1 NC_010501.1 PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN1286 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 1278397 6110077 PputW619_1158 Pseudomonas putida W619 extracellular ligand-binding receptor YP_001748032.1 1277282 R 390235 CDS YP_001748033.1 170720345 6110078 1278757..1279071 1 NC_010501.1 KEGG: pen:PSEEN1288 hypothetical protein; hypothetical protein 1279071 6110078 PputW619_1159 Pseudomonas putida W619 hypothetical protein YP_001748033.1 1278757 D 390235 CDS YP_001748034.1 170720346 6110079 1279232..1280119 1 NC_010501.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pen:PSEEN1291 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 1280119 6110079 PputW619_1160 Pseudomonas putida W619 3-hydroxyisobutyrate dehydrogenase YP_001748034.1 1279232 D 390235 CDS YP_001748035.1 170720347 6110080 complement(1280019..1282283) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN1292 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 1282283 6110080 PputW619_1161 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001748035.1 1280019 R 390235 CDS YP_001748036.1 170720348 6110081 complement(1282485..1285331) 1 NC_010501.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 1285331 6110081 PputW619_1162 Pseudomonas putida W619 ATP-dependent helicase HepA YP_001748036.1 1282485 R 390235 CDS YP_001748037.1 170720349 6110082 1285462..1286157 1 NC_010501.1 KEGG: pen:PSEEN1294 hypothetical protein; hypothetical protein 1286157 6110082 PputW619_1163 Pseudomonas putida W619 hypothetical protein YP_001748037.1 1285462 D 390235 CDS YP_001748038.1 170720350 6110083 1286266..1286595 1 NC_010501.1 KEGG: pen:PSEEN1295 hypothetical protein; hypothetical protein 1286595 6110083 PputW619_1164 Pseudomonas putida W619 hypothetical protein YP_001748038.1 1286266 D 390235 CDS YP_001748039.1 170720351 6110084 1286674..1286835 1 NC_010501.1 KEGG: pen:PSEEN1296 hypothetical protein; hypothetical protein 1286835 6110084 PputW619_1165 Pseudomonas putida W619 hypothetical protein YP_001748039.1 1286674 D 390235 CDS YP_001748040.1 170720352 6110085 1286971..1287087 1 NC_010501.1 KEGG: pen:PSEEN1297 hypothetical protein; hypothetical protein 1287087 6110085 PputW619_1166 Pseudomonas putida W619 hypothetical protein YP_001748040.1 1286971 D 390235 CDS YP_001748041.1 170720353 6110086 1287225..1289255 1 NC_010501.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN1298 hypothetical protein; fusaric acid resistance protein region 1289255 6110086 PputW619_1167 Pseudomonas putida W619 fusaric acid resistance protein region YP_001748041.1 1287225 D 390235 CDS YP_001748042.1 170720354 6110087 1289242..1289448 1 NC_010501.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN1299 hypothetical protein; hypothetical protein 1289448 6110087 PputW619_1168 Pseudomonas putida W619 hypothetical protein YP_001748042.1 1289242 D 390235 CDS YP_001748043.1 170720355 6110088 1289460..1290326 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1300 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 1290326 6110088 PputW619_1169 Pseudomonas putida W619 secretion protein HlyD family protein YP_001748043.1 1289460 D 390235 CDS YP_001748044.1 170720356 6110089 complement(1290341..1291558) 1 NC_010501.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1305 sensor histidine kinase; GAF sensor signal transduction histidine kinase 1291558 6110089 PputW619_1170 Pseudomonas putida W619 GAF sensor signal transduction histidine kinase YP_001748044.1 1290341 R 390235 CDS YP_001748045.1 170720357 6110090 1291744..1292067 1 NC_010501.1 KEGG: pen:PSEEN1306 hypothetical protein; hypothetical protein 1292067 6110090 PputW619_1171 Pseudomonas putida W619 hypothetical protein YP_001748045.1 1291744 D 390235 CDS YP_001748046.1 170720358 6110091 complement(1292082..1293167) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: pen:PSEEN1308 hypothetical protein; diguanylate cyclase 1293167 6110091 PputW619_1172 Pseudomonas putida W619 diguanylate cyclase YP_001748046.1 1292082 R 390235 CDS YP_001748047.1 170720359 6110092 complement(1293391..1294287) 1 NC_010501.1 KEGG: pen:PSEEN1310 transporter, formate/nitrite family; formate/nitrate transporter 1294287 6110092 PputW619_1173 Pseudomonas putida W619 formate/nitrate transporter YP_001748047.1 1293391 R 390235 CDS YP_001748048.1 170720360 6110098 1300175..1301818 1 NC_010501.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1301818 6110098 PputW619_1174 Pseudomonas putida W619 acetolactate synthase YP_001748048.1 1300175 D 390235 CDS YP_001748049.1 170720361 6110099 1302023..1303957 1 NC_010501.1 PFAM: amine oxidase; KEGG: bvi:Bcep1808_4425 amine oxidase; amine oxidase 1303957 6110099 PputW619_1175 Pseudomonas putida W619 amine oxidase YP_001748049.1 1302023 D 390235 CDS YP_001748050.1 170720362 6110100 1304107..1305003 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2988 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1305003 6110100 PputW619_1176 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001748050.1 1304107 D 390235 CDS YP_001748051.1 170720363 6110101 1305014..1306168 1 NC_010501.1 KEGG: aau:AAur_3986 putative integral membrane protein; putative integral membrane protein 1306168 6110101 PputW619_1177 Pseudomonas putida W619 putative integral membrane protein YP_001748051.1 1305014 D 390235 CDS YP_001748052.1 170720364 6110102 1306165..1307154 1 NC_010501.1 PFAM: Asparaginase/glutaminase; KEGG: bov:BOV_1888 asparaginase family protein; asparaginase/glutaminase 1307154 6110102 PputW619_1178 Pseudomonas putida W619 asparaginase/glutaminase YP_001748052.1 1306165 D 390235 CDS YP_001748053.1 170720365 6110103 1307246..1307800 1 NC_010501.1 TIGRFAM: yecA family protein; KEGG: pen:PSEEN1320 hypothetical protein; yecA family protein 1307800 6110103 PputW619_1179 Pseudomonas putida W619 yecA family protein YP_001748053.1 1307246 D 390235 CDS YP_001748054.1 170720366 6110104 1307975..1308598 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase; glutathione S-transferase domain-containing protein 1308598 6110104 PputW619_1180 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001748054.1 1307975 D 390235 CDS YP_001748055.1 170720367 6110105 1308626..1310656 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN1322 oxidoreductase, FAD-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1310656 6110105 PputW619_1181 Pseudomonas putida W619 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001748055.1 1308626 D 390235 CDS YP_001748056.1 170720368 6110106 1310709..1311605 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1324 transcriptional regulator, LysR family; LysR family transcriptional regulator 1311605 6110106 PputW619_1182 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748056.1 1310709 D 390235 CDS YP_001748057.1 170720369 6110107 complement(1311608..1312525) 1 NC_010501.1 PFAM: Aldose 1-epimerase; KEGG: pst:PSPTO_1047 hypothetical protein; aldose 1-epimerase 1312525 6110107 PputW619_1183 Pseudomonas putida W619 aldose 1-epimerase YP_001748057.1 1311608 R 390235 CDS YP_001748058.1 170720370 6110108 complement(1312550..1313470) 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: psp:PSPPH_0932 hypothetical protein; hypothetical protein 1313470 6110108 PputW619_1184 Pseudomonas putida W619 hypothetical protein YP_001748058.1 1312550 R 390235 CDS YP_001748059.1 170720371 6110109 complement(1313630..1314910) 1 NC_010501.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: psp:PSPPH_0933 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 1314910 6110109 PputW619_1185 Pseudomonas putida W619 TRAP dicarboxylate transporter subunit DctM YP_001748059.1 1313630 R 390235 CDS YP_001748060.1 170720372 6110110 complement(1314911..1315438) 1 NC_010501.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfo:Pfl_3455 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1315438 6110110 PputW619_1186 Pseudomonas putida W619 tripartite ATP-independent periplasmic transporter DctQ YP_001748060.1 1314911 R 390235 CDS YP_001748061.1 170720373 6110111 complement(1315507..1316478) 1 NC_010501.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfo:Pfl_3454 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 1316478 6110111 PputW619_1187 Pseudomonas putida W619 TRAP dicarboxylate transporter subunit DctP YP_001748061.1 1315507 R 390235 CDS YP_001748062.1 170720374 6110112 complement(1316544..1317422) 1 NC_010501.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pst:PSPTO_1052 senescence marker protein-30 family protein; SMP-30/gluconolaconase/LRE domain-containing protein 1317422 6110112 PputW619_1188 Pseudomonas putida W619 SMP-30/gluconolaconase/LRE domain-containing protein YP_001748062.1 1316544 R 390235 CDS YP_001748063.1 170720375 6110113 complement(1317449..1318255) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pmy:Pmen_3299 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1318255 6110113 PputW619_1189 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001748063.1 1317449 R 390235 CDS YP_001748064.1 170720376 6110114 complement(1318539..1319777) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: psb:Psyr_2127 outer membrane porin; outer membrane porin 1319777 6110114 PputW619_1190 Pseudomonas putida W619 outer membrane porin YP_001748064.1 1318539 R 390235 CDS YP_001748065.1 170720377 6110115 complement(1320534..1321784) 1 NC_010501.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 1321784 6110115 PputW619_1191 Pseudomonas putida W619 ribonucleotide-diphosphate reductase subunit beta YP_001748065.1 1320534 R 390235 CDS YP_001748066.1 170720378 6110116 complement(1322362..1325241) 1 NC_010501.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1325241 6110116 PputW619_1192 Pseudomonas putida W619 ribonucleotide-diphosphate reductase subunit alpha YP_001748066.1 1322362 R 390235 CDS YP_001748067.1 170720379 6110117 1325922..1326620 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1339 DNA-binding response regulator; two component transcriptional regulator 1326620 6110117 PputW619_1193 Pseudomonas putida W619 two component transcriptional regulator YP_001748067.1 1325922 D 390235 CDS YP_001748068.1 170720380 6110118 1326617..1328224 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1340 sensory histidine kinase; integral membrane sensor signal transduction histidine kinase 1328224 6110118 PputW619_1194 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001748068.1 1326617 D 390235 CDS YP_001748069.1 170720381 6110119 complement(1328228..1328929) 1 NC_010501.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: pen:PSEEN1341 phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase 1328929 6110119 PputW619_1195 Pseudomonas putida W619 4'-phosphopantetheinyl transferase YP_001748069.1 1328228 R 390235 CDS YP_001748070.1 170720382 6110120 complement(1328994..1329785) 1 NC_010501.1 PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: pen:PSEEN1342 hydrolase; probable dienelactone hydrolase; dienelactone hydrolase 1329785 6110120 PputW619_1196 Pseudomonas putida W619 dienelactone hydrolase YP_001748070.1 1328994 R 390235 CDS YP_001748071.1 170720383 6110121 1329915..1330520 1 NC_010501.1 KEGG: pen:PSEEN1343 outer membrane protein H1; outer membrane protein H1 1330520 6110121 PputW619_1197 Pseudomonas putida W619 outer membrane protein H1 YP_001748071.1 1329915 D 390235 CDS YP_001748072.1 170720384 6110122 1330670..1331347 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1345 transcriptional regulatory protein PhoP; two component transcriptional regulator 1331347 6110122 PputW619_1198 Pseudomonas putida W619 two component transcriptional regulator YP_001748072.1 1330670 D 390235 CDS YP_001748073.1 170720385 6110123 1331344..1332690 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1346 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase 1332690 6110123 PputW619_1199 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001748073.1 1331344 D 390235 CDS YP_001748074.1 170720386 6110124 1333013..1334335 1 NC_010501.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1334335 6110124 PputW619_1200 Pseudomonas putida W619 C4-dicarboxylate transporter DctA YP_001748074.1 1333013 D 390235 CDS YP_001748075.1 170720387 6110125 complement(1334408..1334902) 1 NC_010501.1 PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: pen:PSEEN1348 metallopeptidase, SprT family; hypothetical protein 1334902 6110125 PputW619_1201 Pseudomonas putida W619 hypothetical protein YP_001748075.1 1334408 R 390235 CDS YP_001748076.1 170720388 6110126 complement(1335043..1335642) 1 NC_010501.1 PFAM: protein of unknown function DUF1282; KEGG: pen:PSEEN1349 hypothetical protein; hypothetical protein 1335642 6110126 PputW619_1202 Pseudomonas putida W619 hypothetical protein YP_001748076.1 1335043 R 390235 CDS YP_001748077.1 170720389 6110127 1335905..1336729 1 NC_010501.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1336729 6110127 PputW619_1203 Pseudomonas putida W619 C32 tRNA thiolase YP_001748077.1 1335905 D 390235 CDS YP_001748078.1 170720390 6110128 1336733..1337404 1 NC_010501.1 KEGG: pen:PSEEN1351 DNA-glycosylase; DNA-glycosylase 1337404 6110128 PputW619_1204 Pseudomonas putida W619 DNA-glycosylase YP_001748078.1 1336733 D 390235 CDS YP_001748079.1 170720391 6110129 complement(1337437..1337850) 1 NC_010501.1 KEGG: pen:PSEEN1352 hypothetical protein; hypothetical protein 1337850 6110129 PputW619_1205 Pseudomonas putida W619 hypothetical protein YP_001748079.1 1337437 R 390235 CDS YP_001748080.1 170720392 6110130 complement(1337843..1338448) 1 NC_010501.1 TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1353 tryptophan repressor binding protein WrbA; flavoprotein WrbA 1338448 6110130 PputW619_1206 Pseudomonas putida W619 flavoprotein WrbA YP_001748080.1 1337843 R 390235 CDS YP_001748081.1 170720393 6110131 complement(1338445..1338798) 1 NC_010501.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pen:PSEEN1354 arsenate reductase; arsenate reductase 1338798 6110131 PputW619_1207 Pseudomonas putida W619 arsenate reductase YP_001748081.1 1338445 R 390235 CDS YP_001748082.1 170720394 6110132 1338884..1339348 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1355 thioredoxin; alkyl hydroperoxide reductase 1339348 6110132 PputW619_1208 Pseudomonas putida W619 alkyl hydroperoxide reductase YP_001748082.1 1338884 D 390235 CDS YP_001748083.1 170720395 6110133 complement(1339432..1339836) 1 NC_010501.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN1356 hypothetical protein; hypothetical protein 1339836 6110133 PputW619_1209 Pseudomonas putida W619 hypothetical protein YP_001748083.1 1339432 R 390235 CDS YP_001748084.1 170720396 6110134 complement(1339833..1340270) 1 NC_010501.1 KEGG: pen:PSEEN1357 hypothetical protein; hypothetical protein 1340270 6110134 PputW619_1210 Pseudomonas putida W619 hypothetical protein YP_001748084.1 1339833 R 390235 CDS YP_001748085.1 170720397 6110135 complement(1340302..1341291) 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN1358 D-lactate dehydrogenase, NAD-dependent; D-isomer specific 2-hydroxyacid dehydrogenase 1341291 6110135 PputW619_1211 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001748085.1 1340302 R 390235 CDS YP_001748086.1 170720398 6110136 complement(1341447..1344206) 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pen:PSEEN1359 GacS sensor kinase protein; multi-sensor hybrid histidine kinase 1344206 6110136 PputW619_1212 Pseudomonas putida W619 multi-sensor hybrid histidine kinase YP_001748086.1 1341447 R 390235 CDS YP_001748087.1 170720399 6110137 1344359..1345117 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1360 DNA-binding response regulator; two component transcriptional regulator 1345117 6110137 PputW619_1213 Pseudomonas putida W619 two component transcriptional regulator YP_001748087.1 1344359 D 390235 CDS YP_001748088.1 170720400 6110138 1345121..1346512 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1361 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1346512 6110138 PputW619_1214 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001748088.1 1345121 D 390235 CDS YP_001748089.1 170720401 6110139 1346584..1347522 1 NC_010501.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1347522 cysM 6110139 cysM Pseudomonas putida W619 cysteine synthase B YP_001748089.1 1346584 D 390235 CDS YP_001748090.1 170720402 6110140 1347523..1348881 1 NC_010501.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1348881 rumA 6110140 rumA Pseudomonas putida W619 23S rRNA 5-methyluridine methyltransferase YP_001748090.1 1347523 D 390235 CDS YP_001748091.1 170720403 6110141 1348978..1351218 1 NC_010501.1 KEGG: pen:PSEEN1364 GTP pyrophosphokinase RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1351218 6110141 PputW619_1217 Pseudomonas putida W619 (p)ppGpp synthetase I SpoT/RelA YP_001748091.1 1348978 D 390235 CDS YP_001748092.1 170720404 6110142 1351281..1352114 1 NC_010501.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1352114 mazG 6110142 mazG Pseudomonas putida W619 nucleoside triphosphate pyrophosphohydrolase YP_001748092.1 1351281 D 390235 CDS YP_001748093.1 170720405 6110143 1352141..1352680 1 NC_010501.1 KEGG: pen:PSEEN1366 hypothetical protein; hypothetical protein 1352680 6110143 PputW619_1219 Pseudomonas putida W619 hypothetical protein YP_001748093.1 1352141 D 390235 CDS YP_001748094.1 170720406 6110144 complement(1352854..1353036) 1 NC_010501.1 KEGG: pen:PSEEN1367 hypothetical protein; hypothetical protein 1353036 6110144 PputW619_1220 Pseudomonas putida W619 hypothetical protein YP_001748094.1 1352854 R 390235 CDS YP_001748095.1 170720407 6110145 complement(1353202..1353912) 1 NC_010501.1 KEGG: pen:PSEEN1368 hypothetical protein; hypothetical protein 1353912 6110145 PputW619_1221 Pseudomonas putida W619 hypothetical protein YP_001748095.1 1353202 R 390235 CDS YP_001748096.1 170720408 6110146 complement(1353921..1354574) 1 NC_010501.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1354574 purN 6110146 purN Pseudomonas putida W619 phosphoribosylglycinamide formyltransferase YP_001748096.1 1353921 R 390235 CDS YP_001748097.1 170720409 6110147 complement(1354574..1355632) 1 NC_010501.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1355632 6110147 PputW619_1223 Pseudomonas putida W619 phosphoribosylaminoimidazole synthetase YP_001748097.1 1354574 R 390235 CDS YP_001748098.1 170720410 6110148 1355952..1357025 1 NC_010501.1 KEGG: pen:PSEEN1371 hypothetical protein; hypothetical protein 1357025 6110148 PputW619_1224 Pseudomonas putida W619 hypothetical protein YP_001748098.1 1355952 D 390235 CDS YP_001748099.1 170720411 6110149 1357038..1358111 1 NC_010501.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN1372 permease; hypothetical protein 1358111 6110149 PputW619_1225 Pseudomonas putida W619 hypothetical protein YP_001748099.1 1357038 D 390235 CDS YP_001748100.1 170720412 6110150 1358244..1358951 1 NC_010501.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1358951 6110150 PputW619_1226 Pseudomonas putida W619 DNA replication initiation factor YP_001748100.1 1358244 D 390235 CDS YP_001748101.1 170720413 6110151 1359078..1359722 1 NC_010501.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN1374 hypothetical protein; NLP/P60 protein 1359722 6110151 PputW619_1227 Pseudomonas putida W619 NLP/P60 protein YP_001748101.1 1359078 D 390235 CDS YP_001748102.1 170720414 6110152 1359859..1360392 1 NC_010501.1 PFAM: NLP/P60 protein; KEGG: pen:PSEEN1375 hypothetical protein; NLP/P60 protein 1360392 6110152 PputW619_1228 Pseudomonas putida W619 NLP/P60 protein YP_001748102.1 1359859 D 390235 CDS YP_001748103.1 170720415 6110153 complement(1360468..1361385) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_1579 transcriptional regulator, LysR family; LysR family transcriptional regulator 1361385 6110153 PputW619_1229 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748103.1 1360468 R 390235 CDS YP_001748104.1 170720416 6110154 1361510..1362568 1 NC_010501.1 KEGG: psp:PSPPH_1578 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1362568 6110154 PputW619_1230 Pseudomonas putida W619 tartrate dehydrogenase YP_001748104.1 1361510 D 390235 CDS YP_001748105.1 170720417 6110155 1363014..1363625 1 NC_010501.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1363625 6110155 PputW619_1231 Pseudomonas putida W619 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001748105.1 1363014 D 390235 CDS YP_001748106.1 170720418 6110156 1363622..1364917 1 NC_010501.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1364917 6110156 PputW619_1232 Pseudomonas putida W619 cobyrinic acid a,c-diamide synthase YP_001748106.1 1363622 D 390235 CDS YP_001748107.1 170720419 6110157 1364914..1365564 1 NC_010501.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: psp:PSPPH_3700 cobalamin biosynthesis protein, putative; cob(II)yrinic acid a,c-diamide reductase 1365564 6110157 PputW619_1233 Pseudomonas putida W619 cob(II)yrinic acid a,c-diamide reductase YP_001748107.1 1364914 D 390235 CDS YP_001748108.1 170720420 6110158 1365561..1366469 1 NC_010501.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1366469 cobD 6110158 cobD Pseudomonas putida W619 cobalamin biosynthesis protein YP_001748108.1 1365561 D 390235 CDS YP_001748109.1 170720421 6110159 1366462..1367454 1 NC_010501.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1367454 6110159 PputW619_1235 Pseudomonas putida W619 threonine-phosphate decarboxylase YP_001748109.1 1366462 D 390235 CDS YP_001748110.1 170720422 6110160 1367451..1368905 1 NC_010501.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1368905 6110160 PputW619_1236 Pseudomonas putida W619 cobyric acid synthase YP_001748110.1 1367451 D 390235 CDS YP_001748111.1 170720423 6110161 1368907..1369428 1 NC_010501.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1369428 cobU 6110161 cobU Pseudomonas putida W619 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_001748111.1 1368907 D 390235 CDS YP_001748112.1 170720424 6110162 1369425..1370480 1 NC_010501.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1370480 cobT 6110162 cobT Pseudomonas putida W619 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001748112.1 1369425 D 390235 CDS YP_001748113.1 170720425 6110163 1370477..1371046 1 NC_010501.1 TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN1386 alpha-ribazole-5'-phosphate phosphatase CobC; alpha-ribazole phosphatase 1371046 6110163 PputW619_1239 Pseudomonas putida W619 alpha-ribazole phosphatase YP_001748113.1 1370477 D 390235 CDS YP_001748114.1 170720426 6110164 1371048..1371782 1 NC_010501.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1371782 cobS 6110164 cobS Pseudomonas putida W619 cobalamin synthase YP_001748114.1 1371048 D 390235 CDS YP_001748115.1 170720427 6110165 1371846..1372250 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN1389 transcriptional regulator, MarR family; MarR family transcriptional regulator 1372250 6110165 PputW619_1241 Pseudomonas putida W619 MarR family transcriptional regulator YP_001748115.1 1371846 D 390235 CDS YP_001748116.1 170720428 6110166 1372314..1373516 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1390 transporter; major facilitator transporter 1373516 6110166 PputW619_1242 Pseudomonas putida W619 major facilitator transporter YP_001748116.1 1372314 D 390235 CDS YP_001748117.1 170720429 6110167 1373513..1373635 1 NC_010501.1 KEGG: pen:PSEEN1391 hypothetical protein; hypothetical protein 1373635 6110167 PputW619_1243 Pseudomonas putida W619 hypothetical protein YP_001748117.1 1373513 D 390235 CDS YP_001748118.1 170720430 6110168 1373703..1374233 1 NC_010501.1 PFAM: glutathione peroxidase; KEGG: pen:PSEEN1392 glutathione peroxidase; glutathione peroxidase 1374233 6110168 PputW619_1244 Pseudomonas putida W619 glutathione peroxidase YP_001748118.1 1373703 D 390235 CDS YP_001748119.1 170720431 6110169 complement(1374431..1375696) 1 NC_010501.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pen:PSEEN1396 long-chain fatty acid transporter; aromatic hydrocarbon degradation membrane protein 1375696 6110169 PputW619_1245 Pseudomonas putida W619 aromatic hydrocarbon degradation membrane protein YP_001748119.1 1374431 R 390235 CDS YP_001748120.1 170720432 6110170 complement(1375843..1376325) 1 NC_010501.1 KEGG: pen:PSEEN1397 hypothetical protein; hypothetical protein 1376325 6110170 PputW619_1246 Pseudomonas putida W619 hypothetical protein YP_001748120.1 1375843 R 390235 CDS YP_001748121.1 170720433 6110171 complement(1376574..1376798) 1 NC_010501.1 KEGG: pen:PSEEN1400 hypothetical protein; hypothetical protein 1376798 6110171 PputW619_1247 Pseudomonas putida W619 hypothetical protein YP_001748121.1 1376574 R 390235 CDS YP_001748122.1 170720434 6110172 1377824..1378114 1 NC_010501.1 KEGG: pen:PSEEN1403 hypothetical protein; hypothetical protein 1378114 6110172 PputW619_1248 Pseudomonas putida W619 hypothetical protein YP_001748122.1 1377824 D 390235 CDS YP_001748123.1 170720435 6110173 1378152..1379639 1 NC_010501.1 PFAM: protein of unknown function DUF195; KEGG: pen:PSEEN1404 hypothetical protein; hypothetical protein 1379639 6110173 PputW619_1249 Pseudomonas putida W619 hypothetical protein YP_001748123.1 1378152 D 390235 CDS YP_001748124.1 170720436 6110174 complement(1379611..1383087) 1 NC_010501.1 PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1405 sensory box histidine kinase/response regulator hybrid; integral membrane sensor hybrid histidine kinase 1383087 6110174 PputW619_1250 Pseudomonas putida W619 integral membrane sensor hybrid histidine kinase YP_001748124.1 1379611 R 390235 CDS YP_001748125.1 170720437 6110175 complement(1383232..1383969) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mmw:Mmwyl1_0972 transcriptional regulator, GntR family; GntR family transcriptional regulator 1383969 6110175 PputW619_1251 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748125.1 1383232 R 390235 CDS YP_001748126.1 170720438 6110176 1384136..1384969 1 NC_010501.1 PFAM: amidohydrolase 2; KEGG: mmw:Mmwyl1_0971 amidohydrolase 2; amidohydrolase 2 1384969 6110176 PputW619_1252 Pseudomonas putida W619 amidohydrolase 2 YP_001748126.1 1384136 D 390235 CDS YP_001748127.1 170720439 6110177 1385002..1386303 1 NC_010501.1 PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: mmw:Mmwyl1_0970 dicarboxylate carrier MatC domain protein; dicarboxylate carrier MatC domain-containing protein 1386303 6110177 PputW619_1253 Pseudomonas putida W619 dicarboxylate carrier MatC domain-containing protein YP_001748127.1 1385002 D 390235 CDS YP_001748128.1 170720440 6110178 complement(1386368..1388287) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_0728 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1388287 6110178 PputW619_1254 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001748128.1 1386368 R 390235 CDS YP_001748129.1 170720441 6110179 1388554..1390431 1 NC_010501.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1408 acyltransferase; phospholipid/glycerol acyltransferase 1390431 6110179 PputW619_1255 Pseudomonas putida W619 phospholipid/glycerol acyltransferase YP_001748129.1 1388554 D 390235 CDS YP_001748130.1 170720442 6110180 complement(1390442..1390759) 1 NC_010501.1 PFAM: small multidrug resistance protein; KEGG: pen:PSEEN1409 multidrug efflux pump; small multidrug resistance protein 1390759 6110180 PputW619_1256 Pseudomonas putida W619 small multidrug resistance protein YP_001748130.1 1390442 R 390235 CDS YP_001748131.1 170720443 6110181 complement(1390946..1391902) 1 NC_010501.1 Required for efficient pilin antigenic variation; recombination associated protein 1391902 rdgC 6110181 rdgC Pseudomonas putida W619 recombination associated protein YP_001748131.1 1390946 R 390235 CDS YP_001748132.1 170720444 6110186 complement(1392670..1393446) 1 NC_010501.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pen:PSEEN1415 methionine aminopeptidase, type I Map; methionine aminopeptidase 1393446 6110186 PputW619_1258 Pseudomonas putida W619 methionine aminopeptidase YP_001748132.1 1392670 R 390235 CDS YP_001748133.1 170720445 6110187 1393780..1397553 1 NC_010501.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1417 assimilatory nitrate reductase; molybdopterin oxidoreductase 1397553 6110187 PputW619_1259 Pseudomonas putida W619 molybdopterin oxidoreductase YP_001748133.1 1393780 D 390235 CDS YP_001748134.1 170720446 6110188 1397856..1400408 1 NC_010501.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1418 nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding; nitrite reductase (NAD(P)H) large subunit 1400408 6110188 PputW619_1260 Pseudomonas putida W619 nitrite reductase (NAD(P)H) large subunit YP_001748134.1 1397856 D 390235 CDS YP_001748135.1 170720447 6110189 1400408..1400770 1 NC_010501.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: pen:PSEEN1419 nitrite reductase, small subunit NirD; nitrite reductase (NAD(P)H) small subunit 1400770 6110189 PputW619_1261 Pseudomonas putida W619 nitrite reductase (NAD(P)H) small subunit YP_001748135.1 1400408 D 390235 CDS YP_001748136.1 170720448 6110190 1401220..1402152 1 NC_010501.1 TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1425 pca operon transcriptional activator PcaQ; LysR family transcriptional regulator 1402152 6110190 PputW619_1262 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748136.1 1401220 D 390235 CDS YP_001748137.1 170720449 6110191 complement(1402216..1403547) 1 NC_010501.1 hypothetical protein 1403547 6110191 PputW619_1263 Pseudomonas putida W619 hypothetical protein YP_001748137.1 1402216 R 390235 CDS YP_001748138.1 170720450 6110192 1403885..1404649 1 NC_010501.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1426 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 1404649 6110192 PputW619_1264 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001748138.1 1403885 D 390235 CDS YP_001748139.1 170720451 6110193 1404930..1405370 1 NC_010501.1 PFAM: protein of unknown function DUF1232; KEGG: pen:PSEEN1427 hypothetical protein; hypothetical protein 1405370 6110193 PputW619_1265 Pseudomonas putida W619 hypothetical protein YP_001748139.1 1404930 D 390235 CDS YP_001748140.1 170720452 6110194 1405471..1405809 1 NC_010501.1 PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1428 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1405809 6110194 PputW619_1266 Pseudomonas putida W619 XRE family transcriptional regulator YP_001748140.1 1405471 D 390235 CDS YP_001748141.1 170720453 6110195 1405806..1406174 1 NC_010501.1 KEGG: pen:PSEEN1429 hypothetical protein; hypothetical protein 1406174 6110195 PputW619_1267 Pseudomonas putida W619 hypothetical protein YP_001748141.1 1405806 D 390235 CDS YP_001748142.1 170720454 6110196 complement(1406318..1408399) 1 NC_010501.1 KEGG: pen:PSEEN1431 carboxy-terminal protease for penicillin-binding protein 3 Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1408399 6110196 PputW619_1268 Pseudomonas putida W619 carboxyl-terminal protease YP_001748142.1 1406318 R 390235 CDS YP_001748143.1 170720455 6110197 1408542..1409504 1 NC_010501.1 TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1432 alcohol dehydrogenase, zinc-containing; PIG3 family NAD(P)H quinone oxidoreductase 1409504 6110197 PputW619_1269 Pseudomonas putida W619 PIG3 family NAD(P)H quinone oxidoreductase YP_001748143.1 1408542 D 390235 CDS YP_001748144.1 170720456 6110198 complement(1409605..1410258) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1433 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1410258 6110198 PputW619_1270 Pseudomonas putida W619 HAD family hydrolase YP_001748144.1 1409605 R 390235 CDS YP_001748145.1 170720457 6110199 complement(1410272..1411261) 1 NC_010501.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1434 ABC transporter, ATP-binding protein; ABC transporter-like protein 1411261 6110199 PputW619_1271 Pseudomonas putida W619 ABC transporter-like protein YP_001748145.1 1410272 R 390235 CDS YP_001748146.1 170720458 6110200 complement(1411263..1412069) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1435 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1412069 6110200 PputW619_1272 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748146.1 1411263 R 390235 CDS YP_001748147.1 170720459 6110201 complement(1412059..1412898) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1436 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1412898 6110201 PputW619_1273 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748147.1 1412059 R 390235 CDS YP_001748148.1 170720460 6110202 complement(1412895..1413701) 1 NC_010501.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pen:PSEEN1437 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 1413701 6110202 PputW619_1274 Pseudomonas putida W619 type I phosphodiesterase/nucleotide pyrophosphatase YP_001748148.1 1412895 R 390235 CDS YP_001748149.1 170720461 6110203 complement(1413811..1414875) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1438 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 1414875 6110203 PputW619_1275 Pseudomonas putida W619 extracellular solute-binding protein YP_001748149.1 1413811 R 390235 CDS YP_001748150.1 170720462 6110204 1415217..1415930 1 NC_010501.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN1439 transcriptional regulator, GntR family; GntR family transcriptional regulator 1415930 6110204 PputW619_1276 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748150.1 1415217 D 390235 CDS YP_001748151.1 170720463 6110205 complement(1415959..1418115) 1 NC_010501.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN1440 transporter, mechanosensitive ion channel family protein; mechanosensitive ion channel MscS 1418115 6110205 PputW619_1277 Pseudomonas putida W619 mechanosensitive ion channel MscS YP_001748151.1 1415959 R 390235 CDS YP_001748152.1 170720464 6110206 complement(1418160..1418327) 1 NC_010501.1 KEGG: pen:PSEEN1441 hypothetical protein; hypothetical protein 1418327 6110206 PputW619_1278 Pseudomonas putida W619 hypothetical protein YP_001748152.1 1418160 R 390235 CDS YP_001748153.1 170720465 6110207 1419024..1419761 1 NC_010501.1 KEGG: psb:Psyr_3766 hypothetical protein; hypothetical protein 1419761 6110207 PputW619_1279 Pseudomonas putida W619 hypothetical protein YP_001748153.1 1419024 D 390235 CDS YP_001748154.1 170720466 6110208 complement(1419806..1421095) 1 NC_010501.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 1421095 6110208 PputW619_1280 Pseudomonas putida W619 putative aminopeptidase 2 YP_001748154.1 1419806 R 390235 CDS YP_001748155.1 170720467 6110209 complement(1421219..1421854) 1 NC_010501.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN1443 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase 1421854 6110209 PputW619_1281 Pseudomonas putida W619 pseudouridine synthase YP_001748155.1 1421219 R 390235 CDS YP_001748156.1 170720468 6110210 complement(1421996..1422250) 1 NC_010501.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1422250 minE 6110210 minE Pseudomonas putida W619 cell division topological specificity factor MinE YP_001748156.1 1421996 R 390235 CDS YP_001748157.1 170720469 6110211 complement(1422254..1423066) 1 NC_010501.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN1445 septum site-determining protein MinD; septum site-determining protein MinD 1423066 6110211 PputW619_1283 Pseudomonas putida W619 septum site-determining protein MinD YP_001748157.1 1422254 R 390235 CDS YP_001748158.1 170720470 6110212 complement(1423166..1423912) 1 NC_010501.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1423912 minC 6110212 minC Pseudomonas putida W619 septum formation inhibitor YP_001748158.1 1423166 R 390235 CDS YP_001748159.1 170720471 6110213 1424024..1424959 1 NC_010501.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1424959 6110213 PputW619_1285 Pseudomonas putida W619 lipid A biosynthesis lauroyl acyltransferase YP_001748159.1 1424024 D 390235 CDS YP_001748160.1 170720472 6110214 1425026..1426174 1 NC_010501.1 PFAM: Patatin; KEGG: pen:PSEEN1448 hypothetical protein; patatin 1426174 6110214 PputW619_1286 Pseudomonas putida W619 patatin YP_001748160.1 1425026 D 390235 CDS YP_001748161.1 170720473 6110215 complement(1426332..1427156) 1 NC_010501.1 PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN1449 lipoprotein VacJ-like; VacJ family lipoprotein 1427156 6110215 PputW619_1287 Pseudomonas putida W619 VacJ family lipoprotein YP_001748161.1 1426332 R 390235 CDS YP_001748162.1 170720474 6110216 complement(1427149..1428447) 1 NC_010501.1 KEGG: pen:PSEEN1450 hypothetical protein; hypothetical protein 1428447 6110216 PputW619_1288 Pseudomonas putida W619 hypothetical protein YP_001748162.1 1427149 R 390235 CDS YP_001748163.1 170720475 6110217 1428643..1429011 1 NC_010501.1 KEGG: pen:PSEEN1451 hypothetical protein; hypothetical protein 1429011 6110217 PputW619_1289 Pseudomonas putida W619 hypothetical protein YP_001748163.1 1428643 D 390235 CDS YP_001748164.1 170720476 6110218 complement(1429051..1430616) 1 NC_010501.1 PFAM: glycoside hydrolase family 17; KEGG: pen:PSEEN1452 beta (1-6) glucans synthase; glycoside hydrolase family protein 1430616 6110218 PputW619_1290 Pseudomonas putida W619 glycoside hydrolase family protein YP_001748164.1 1429051 R 390235 CDS YP_001748165.1 170720477 6110219 1430814..1431674 1 NC_010501.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1453 glycine betaine-binding protein, ABC type; glycine betaine ABC transporter substrate-binding protein 1431674 6110219 PputW619_1291 Pseudomonas putida W619 glycine betaine ABC transporter substrate-binding protein YP_001748165.1 1430814 D 390235 CDS YP_001748166.1 170720478 6110220 1431925..1432236 1 NC_010501.1 PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN1454 hypothetical protein; hypothetical protein 1432236 6110220 PputW619_1292 Pseudomonas putida W619 hypothetical protein YP_001748166.1 1431925 D 390235 CDS YP_001748167.1 170720479 6110221 1432233..1433897 1 NC_010501.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1433897 actP 6110221 actP Pseudomonas putida W619 acetate permease YP_001748167.1 1432233 D 390235 CDS YP_001748168.1 170720480 6110222 complement(1433963..1434115) 1 NC_010501.1 KEGG: pen:PSEEN1462 hypothetical protein; hypothetical protein 1434115 6110222 PputW619_1294 Pseudomonas putida W619 hypothetical protein YP_001748168.1 1433963 R 390235 CDS YP_001748169.1 170720481 6110223 1434322..1435137 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1463 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1435137 6110223 PputW619_1295 Pseudomonas putida W619 short chain dehydrogenase YP_001748169.1 1434322 D 390235 CDS YP_001748170.1 170720482 6110224 1435258..1435446 1 NC_010501.1 PFAM: carbon storage regulator; KEGG: pen:PSEEN1464 carbon storage regulator; carbon storage regulator CsrA 1435446 6110224 PputW619_1296 Pseudomonas putida W619 carbon storage regulator CsrA YP_001748170.1 1435258 D 390235 CDS YP_001748171.1 170720483 6110225 complement(1435501..1435737) 1 NC_010501.1 PFAM: protein of unknown function UPF0270; KEGG: pen:PSEEN1465 hypothetical protein; hypothetical protein 1435737 6110225 PputW619_1297 Pseudomonas putida W619 hypothetical protein YP_001748171.1 1435501 R 390235 CDS YP_001748172.1 170720484 6110226 complement(1435790..1436974) 1 NC_010501.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M20; peptidase M42 family protein; KEGG: pen:PSEEN1467 peptidase M42; peptidase M42 family hydrolase 1436974 6110226 PputW619_1298 Pseudomonas putida W619 peptidase M42 family hydrolase YP_001748172.1 1435790 R 390235 CDS YP_001748173.1 170720485 6110227 complement(1437048..1438793) 1 NC_010501.1 KEGG: pen:PSEEN1468 acetyltransferase, GNAT family; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; GNAT family acetyltransferase 1438793 6110227 PputW619_1299 Pseudomonas putida W619 GNAT family acetyltransferase YP_001748173.1 1437048 R 390235 CDS YP_001748174.1 170720486 6110228 complement(1438797..1440584) 1 NC_010501.1 KEGG: pen:PSEEN1469 asparagine synthetase AsnB; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase amidotransferase 1440584 6110228 PputW619_1300 Pseudomonas putida W619 asparagine synthase amidotransferase YP_001748174.1 1438797 R 390235 CDS YP_001748175.1 170720487 6110229 complement(1440621..1441811) 1 NC_010501.1 PFAM: integrase family protein; KEGG: par:Psyc_0479 possible phage integrase; integrase family protein 1441811 6110229 PputW619_1301 Pseudomonas putida W619 integrase family protein YP_001748175.1 1440621 R 390235 CDS YP_001748176.1 170720488 6110230 complement(1442023..1442775) 1 NC_010501.1 KEGG: mag:amb1496 hypothetical protein; hypothetical protein 1442775 6110230 PputW619_1302 Pseudomonas putida W619 hypothetical protein YP_001748176.1 1442023 R 390235 CDS YP_001748177.1 170720489 6110231 complement(1442772..1443461) 1 NC_010501.1 hypothetical protein 1443461 6110231 PputW619_1303 Pseudomonas putida W619 hypothetical protein YP_001748177.1 1442772 R 390235 CDS YP_001748178.1 170720490 6110232 complement(1443452..1443601) 1 NC_010501.1 hypothetical protein 1443601 6110232 PputW619_1304 Pseudomonas putida W619 hypothetical protein YP_001748178.1 1443452 R 390235 CDS YP_001748179.1 170720491 6110233 complement(1443598..1444269) 1 NC_010501.1 KEGG: pst:PSPTO_3944 hypothetical protein; hypothetical protein 1444269 6110233 PputW619_1305 Pseudomonas putida W619 hypothetical protein YP_001748179.1 1443598 R 390235 CDS YP_001748180.1 170720492 6110234 complement(1444256..1444630) 1 NC_010501.1 PFAM: carbon storage regulator; KEGG: hha:Hhal_1651 carbon storage regulator, CsrA; carbon storage regulator CsrA 1444630 6110234 PputW619_1306 Pseudomonas putida W619 carbon storage regulator CsrA YP_001748180.1 1444256 R 390235 CDS YP_001748181.1 170720493 6110235 complement(1444721..1445116) 1 NC_010501.1 PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2243 LuxR family DNA binding protein; LuxR family transcriptional regulator 1445116 6110235 PputW619_1307 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001748181.1 1444721 R 390235 CDS YP_001748182.1 170720494 6110236 complement(1445251..1445940) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B; XRE family transcriptional regulator 1445940 6110236 PputW619_1308 Pseudomonas putida W619 XRE family transcriptional regulator YP_001748182.1 1445251 R 390235 CDS YP_001748183.1 170720495 6110237 1446015..1446326 1 NC_010501.1 hypothetical protein 1446326 6110237 PputW619_1309 Pseudomonas putida W619 hypothetical protein YP_001748183.1 1446015 D 390235 CDS YP_001748184.1 170720496 6110238 complement(1446489..1446974) 1 NC_010501.1 KEGG: nme:NMB1093 hypothetical protein; hypothetical protein 1446974 6110238 PputW619_1310 Pseudomonas putida W619 hypothetical protein YP_001748184.1 1446489 R 390235 CDS YP_001748185.1 170720497 6110239 1447152..1447430 1 NC_010501.1 hypothetical protein 1447430 6110239 PputW619_1311 Pseudomonas putida W619 hypothetical protein YP_001748185.1 1447152 D 390235 CDS YP_001748186.1 170720498 6110240 1447427..1447732 1 NC_010501.1 hypothetical protein 1447732 6110240 PputW619_1312 Pseudomonas putida W619 hypothetical protein YP_001748186.1 1447427 D 390235 CDS YP_001748187.1 170720499 6110241 1447729..1447965 1 NC_010501.1 hypothetical protein 1447965 6110241 PputW619_1313 Pseudomonas putida W619 hypothetical protein YP_001748187.1 1447729 D 390235 CDS YP_001748188.1 170720500 6110242 1447962..1448252 1 NC_010501.1 hypothetical protein 1448252 6110242 PputW619_1314 Pseudomonas putida W619 hypothetical protein YP_001748188.1 1447962 D 390235 CDS YP_001748189.1 170720501 6110243 1448249..1449019 1 NC_010501.1 PFAM: BRO domain protein; KEGG: mca:MCA2642 hypothetical protein; prophage antirepressor 1449019 6110243 PputW619_1315 Pseudomonas putida W619 prophage antirepressor YP_001748189.1 1448249 D 390235 CDS YP_001748190.1 170720502 6110244 1449016..1449390 1 NC_010501.1 hypothetical protein 1449390 6110244 PputW619_1316 Pseudomonas putida W619 hypothetical protein YP_001748190.1 1449016 D 390235 CDS YP_001748191.1 170720503 6110245 1449387..1449614 1 NC_010501.1 hypothetical protein 1449614 6110245 PputW619_1317 Pseudomonas putida W619 hypothetical protein YP_001748191.1 1449387 D 390235 CDS YP_001748192.1 170720504 6110246 1449626..1450393 1 NC_010501.1 KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 1450393 6110246 PputW619_1318 Pseudomonas putida W619 hypothetical protein YP_001748192.1 1449626 D 390235 CDS YP_001748193.1 170720505 6110247 1450390..1451163 1 NC_010501.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: hha:Hhal_0638 IstB domain protein ATP-binding protein; IstB ATP binding domain-containing protein 1451163 6110247 PputW619_1319 Pseudomonas putida W619 IstB ATP binding domain-containing protein YP_001748193.1 1450390 D 390235 CDS YP_001748194.1 170720506 6110248 1451160..1452572 1 NC_010501.1 PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0223 DnaB helicase; DnaB domain-containing protein 1452572 6110248 PputW619_1320 Pseudomonas putida W619 DnaB domain-containing protein YP_001748194.1 1451160 D 390235 CDS YP_001748195.1 170720507 6110249 1452559..1453065 1 NC_010501.1 hypothetical protein 1453065 6110249 PputW619_1321 Pseudomonas putida W619 hypothetical protein YP_001748195.1 1452559 D 390235 CDS YP_001748196.1 170720508 6110250 1453062..1453349 1 NC_010501.1 hypothetical protein 1453349 6110250 PputW619_1322 Pseudomonas putida W619 hypothetical protein YP_001748196.1 1453062 D 390235 CDS YP_001748197.1 170720509 6110251 1453346..1453735 1 NC_010501.1 KEGG: hch:HCH_00599 hypothetical protein; hypothetical protein 1453735 6110251 PputW619_1323 Pseudomonas putida W619 hypothetical protein YP_001748197.1 1453346 D 390235 CDS YP_001748198.1 170720510 6110252 1453961..1454470 1 NC_010501.1 KEGG: pap:PSPA7_5310 hypothetical protein; hypothetical protein 1454470 6110252 PputW619_1324 Pseudomonas putida W619 hypothetical protein YP_001748198.1 1453961 D 390235 CDS YP_001748199.1 170720511 6110253 complement(1454790..1454978) 1 NC_010501.1 hypothetical protein 1454978 6110253 PputW619_1325 Pseudomonas putida W619 hypothetical protein YP_001748199.1 1454790 R 390235 CDS YP_001748200.1 170720512 6110254 complement(1455170..1455397) 1 NC_010501.1 hypothetical protein 1455397 6110254 PputW619_1326 Pseudomonas putida W619 hypothetical protein YP_001748200.1 1455170 R 390235 CDS YP_001748201.1 170720513 6110255 complement(1455394..1455627) 1 NC_010501.1 KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein 1455627 6110255 PputW619_1327 Pseudomonas putida W619 hypothetical protein YP_001748201.1 1455394 R 390235 CDS YP_001748202.1 170720514 6110256 1455749..1456120 1 NC_010501.1 KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein 1456120 6110256 PputW619_1328 Pseudomonas putida W619 hypothetical protein YP_001748202.1 1455749 D 390235 CDS YP_001748203.1 170720515 6110257 1456120..1456437 1 NC_010501.1 KEGG: psb:Psyr_4598 lipoprotein, putative; putative lipoprotein 1456437 6110257 PputW619_1329 Pseudomonas putida W619 putative lipoprotein YP_001748203.1 1456120 D 390235 CDS YP_001748204.1 170720516 6110258 1456488..1456643 1 NC_010501.1 hypothetical protein 1456643 6110258 PputW619_1330 Pseudomonas putida W619 hypothetical protein YP_001748204.1 1456488 D 390235 CDS YP_001748205.1 170720517 6110259 1456776..1457060 1 NC_010501.1 hypothetical protein 1457060 6110259 PputW619_1331 Pseudomonas putida W619 hypothetical protein YP_001748205.1 1456776 D 390235 CDS YP_001748206.1 170720518 6110260 1457125..1457481 1 NC_010501.1 hypothetical protein 1457481 6110260 PputW619_1332 Pseudomonas putida W619 hypothetical protein YP_001748206.1 1457125 D 390235 CDS YP_001748207.1 170720519 6110261 1457472..1457840 1 NC_010501.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ecv:APECO1_3888 putative phage endonuclease; HNH endonuclease 1457840 6110261 PputW619_1333 Pseudomonas putida W619 HNH endonuclease YP_001748207.1 1457472 D 390235 CDS YP_001748208.1 170720520 6110262 1457968..1458351 1 NC_010501.1 KEGG: pol:Bpro_2971 hypothetical protein; hypothetical protein 1458351 6110262 PputW619_1334 Pseudomonas putida W619 hypothetical protein YP_001748208.1 1457968 D 390235 CDS YP_001748209.1 170720521 6110263 1458351..1460060 1 NC_010501.1 PFAM: Terminase; KEGG: dvu:DVU1503 terminase, large subunit; terminase 1460060 6110263 PputW619_1335 Pseudomonas putida W619 terminase YP_001748209.1 1458351 D 390235 CDS YP_001748210.1 170720522 6110264 1460072..1460236 1 NC_010501.1 hypothetical protein 1460236 6110264 PputW619_1336 Pseudomonas putida W619 hypothetical protein YP_001748210.1 1460072 D 390235 CDS YP_001748211.1 170720523 6110265 1460229..1461563 1 NC_010501.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bpm:BURPS1710b_1680 phage portal protein, HK97 family; HK97 family phage portal protein 1461563 6110265 PputW619_1337 Pseudomonas putida W619 HK97 family phage portal protein YP_001748211.1 1460229 D 390235 CDS YP_001748212.1 170720524 6110266 1461560..1462306 1 NC_010501.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bpm:BURPS1710b_1681 gp4; HK97 family phage prohead protease 1462306 6110266 PputW619_1338 Pseudomonas putida W619 HK97 family phage prohead protease YP_001748212.1 1461560 D 390235 CDS YP_001748213.1 170720525 6110267 1462316..1463572 1 NC_010501.1 TIGRFAM: phage major capsid protein, HK97 family; KEGG: nar:Saro_0649 phage major capsid protein, HK97; HK97 family phage major capsid protein 1463572 6110267 PputW619_1339 Pseudomonas putida W619 HK97 family phage major capsid protein YP_001748213.1 1462316 D 390235 CDS YP_001748214.1 170720526 6110268 1463614..1463838 1 NC_010501.1 hypothetical protein 1463838 6110268 PputW619_1340 Pseudomonas putida W619 hypothetical protein YP_001748214.1 1463614 D 390235 CDS YP_001748215.1 170720527 6110269 1463842..1464318 1 NC_010501.1 KEGG: dac:Daci_1636 hypothetical protein; hypothetical protein 1464318 6110269 PputW619_1341 Pseudomonas putida W619 hypothetical protein YP_001748215.1 1463842 D 390235 CDS YP_001748216.1 170720528 6110270 1464318..1464659 1 NC_010501.1 TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: pap:PSPA7_5157 phage head-tail adaptor, putative; phage head-tail adaptor 1464659 6110270 PputW619_1342 Pseudomonas putida W619 phage head-tail adaptor YP_001748216.1 1464318 D 390235 CDS YP_001748217.1 170720529 6110271 1464652..1465137 1 NC_010501.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: shw:Sputw3181_2475 phage protein, HK97 GP10 family; HK97 family phage protein 1465137 6110271 PputW619_1343 Pseudomonas putida W619 HK97 family phage protein YP_001748217.1 1464652 D 390235 CDS YP_001748218.1 170720530 6110272 1465134..1465502 1 NC_010501.1 KEGG: son:SO_2957 hypothetical protein; hypothetical protein 1465502 6110272 PputW619_1344 Pseudomonas putida W619 hypothetical protein YP_001748218.1 1465134 D 390235 CDS YP_001748219.1 170720531 6110273 1465565..1466062 1 NC_010501.1 KEGG: pae:PA0633 hypothetical protein; hypothetical protein 1466062 6110273 PputW619_1345 Pseudomonas putida W619 hypothetical protein YP_001748219.1 1465565 D 390235 CDS YP_001748220.1 170720532 6110274 1466059..1466397 1 NC_010501.1 KEGG: pen:PSEEN4181 hypothetical protein; hypothetical protein 1466397 6110274 PputW619_1346 Pseudomonas putida W619 hypothetical protein YP_001748220.1 1466059 D 390235 CDS YP_001748221.1 170720533 6110275 1466427..1466684 1 NC_010501.1 KEGG: pen:PSEEN4180 phage protein; phage protein 1466684 6110275 PputW619_1347 Pseudomonas putida W619 phage protein YP_001748221.1 1466427 D 390235 CDS YP_001748222.1 170720534 6110276 1466759..1467097 1 NC_010501.1 KEGG: deb:DehaBAV1_0039 hypothetical protein; hypothetical protein 1467097 6110276 PputW619_1348 Pseudomonas putida W619 hypothetical protein YP_001748222.1 1466759 D 390235 CDS YP_001748223.1 170720535 6110277 1467151..1469712 1 NC_010501.1 TIGRFAM: phage tail tape measure protein, lambda family; PFAM: tail tape measure protein lambda; KEGG: rsh:Rsph17029_3328 hypothetical protein; lambda family phage tail tape measure protein 1469712 6110277 PputW619_1349 Pseudomonas putida W619 lambda family phage tail tape measure protein YP_001748223.1 1467151 D 390235 CDS YP_001748224.1 170720536 6110278 1469722..1470306 1 NC_010501.1 KEGG: pst:PSPTO_4044 hypothetical protein; hypothetical protein 1470306 6110278 PputW619_1350 Pseudomonas putida W619 hypothetical protein YP_001748224.1 1469722 D 390235 CDS YP_001748225.1 170720537 6110279 1470306..1470902 1 NC_010501.1 KEGG: pst:PSPTO_4043 hypothetical protein; hypothetical protein 1470902 6110279 PputW619_1351 Pseudomonas putida W619 hypothetical protein YP_001748225.1 1470306 D 390235 CDS YP_001748226.1 170720538 6110280 1470908..1471306 1 NC_010501.1 KEGG: pst:PSPTO_2088 hypothetical protein; hypothetical protein 1471306 6110280 PputW619_1352 Pseudomonas putida W619 hypothetical protein YP_001748226.1 1470908 D 390235 CDS YP_001748227.1 170720539 6110281 1471306..1476798 1 NC_010501.1 PFAM: Fibronectin type III domain protein; Protein of unknown function DUF1983; KEGG: pst:PSPTO_4041 host specificity protein J, internal deletion; hypothetical protein 1476798 6110281 PputW619_1353 Pseudomonas putida W619 hypothetical protein YP_001748227.1 1471306 D 390235 CDS YP_001748228.1 170720540 6110282 1477118..1477972 1 NC_010501.1 hypothetical protein 1477972 6110282 PputW619_1354 Pseudomonas putida W619 hypothetical protein YP_001748228.1 1477118 D 390235 CDS YP_001748229.1 170720541 6110283 1477978..1478220 1 NC_010501.1 hypothetical protein 1478220 6110283 PputW619_1355 Pseudomonas putida W619 hypothetical protein YP_001748229.1 1477978 D 390235 CDS YP_001748230.1 170720542 6110284 1478283..1478720 1 NC_010501.1 KEGG: pmy:Pmen_3951 hypothetical protein; hypothetical protein 1478720 6110284 PputW619_1356 Pseudomonas putida W619 hypothetical protein YP_001748230.1 1478283 D 390235 CDS YP_001748231.1 170720543 6110285 1478717..1479223 1 NC_010501.1 KEGG: psp:PSPPH_2397 hypothetical protein; hypothetical protein 1479223 6110285 PputW619_1357 Pseudomonas putida W619 hypothetical protein YP_001748231.1 1478717 D 390235 CDS YP_001748232.1 170720544 6110286 1479299..1479808 1 NC_010501.1 KEGG: rha:RHA1_ro10077 hypothetical protein; hypothetical protein 1479808 6110286 PputW619_1358 Pseudomonas putida W619 hypothetical protein YP_001748232.1 1479299 D 390235 CDS YP_001748233.1 170720545 6110287 complement(1480170..1482143) 1 NC_010501.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1482143 mnmC 6110287 mnmC Pseudomonas putida W619 5-methylaminomethyl-2-thiouridine methyltransferase YP_001748233.1 1480170 R 390235 CDS YP_001748234.1 170720546 6110288 1482300..1483793 1 NC_010501.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN1471 hypothetical protein; hypothetical protein 1483793 6110288 PputW619_1360 Pseudomonas putida W619 hypothetical protein YP_001748234.1 1482300 D 390235 CDS YP_001748235.1 170720547 6110289 1483913..1484875 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1473 hypothetical protein; hypothetical protein 1484875 6110289 PputW619_1361 Pseudomonas putida W619 hypothetical protein YP_001748235.1 1483913 D 390235 CDS YP_001748236.1 170720548 6110290 complement(1485042..1486436) 1 NC_010501.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1486436 6110290 PputW619_1362 Pseudomonas putida W619 fumarate hydratase YP_001748236.1 1485042 R 390235 CDS YP_001748237.1 170720549 6110291 1486592..1487116 1 NC_010501.1 KEGG: pen:PSEEN1475 hypothetical protein; hypothetical protein 1487116 6110291 PputW619_1363 Pseudomonas putida W619 hypothetical protein YP_001748237.1 1486592 D 390235 CDS YP_001748238.1 170720550 6110292 1487127..1487426 1 NC_010501.1 PFAM: BolA family protein; KEGG: pen:PSEEN1476 transcriptional regulator, BolA superfamily; BolA family protein 1487426 6110292 PputW619_1364 Pseudomonas putida W619 BolA family protein YP_001748238.1 1487127 D 390235 CDS YP_001748239.1 170720551 6110293 1487631..1488563 1 NC_010501.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN1477 hypothetical protein; hypothetical protein 1488563 6110293 PputW619_1365 Pseudomonas putida W619 hypothetical protein YP_001748239.1 1487631 D 390235 CDS YP_001748240.1 170720552 6110294 1488568..1489200 1 NC_010501.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN1478 hypothetical protein; DSBA oxidoreductase 1489200 6110294 PputW619_1366 Pseudomonas putida W619 DSBA oxidoreductase YP_001748240.1 1488568 D 390235 CDS YP_001748241.1 170720553 6110295 1489193..1491025 1 NC_010501.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1479 ABC transporter, ATP-binding protein; ABC transporter-like protein 1491025 6110295 PputW619_1367 Pseudomonas putida W619 ABC transporter-like protein YP_001748241.1 1489193 D 390235 CDS YP_001748242.1 170720554 6110296 1491141..1493597 1 NC_010501.1 KEGG: pen:PSEEN1480 sensory box protein/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1493597 6110296 PputW619_1368 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001748242.1 1491141 D 390235 CDS YP_001748243.1 170720555 6110297 1493637..1494422 1 NC_010501.1 KEGG: pen:PSEEN1481 hypothetical protein; hypothetical protein 1494422 6110297 PputW619_1369 Pseudomonas putida W619 hypothetical protein YP_001748243.1 1493637 D 390235 CDS YP_001748244.1 170720556 6110298 complement(1494563..1495303) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1482 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1495303 6110298 PputW619_1370 Pseudomonas putida W619 short chain dehydrogenase YP_001748244.1 1494563 R 390235 CDS YP_001748245.1 170720557 6110299 complement(1495347..1496018) 1 NC_010501.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 1496018 6110299 PputW619_1371 Pseudomonas putida W619 phosphoglycolate phosphatase YP_001748245.1 1495347 R 390235 CDS YP_001748246.1 170720558 6110300 complement(1496021..1496719) 1 NC_010501.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1496719 6110300 PputW619_1372 Pseudomonas putida W619 3-demethylubiquinone-9 3-methyltransferase YP_001748246.1 1496021 R 390235 CDS YP_001748247.1 170720559 6110301 1496830..1497906 1 NC_010501.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1497906 mtnA 6110301 mtnA Pseudomonas putida W619 methylthioribose-1-phosphate isomerase YP_001748247.1 1496830 D 390235 CDS YP_001748248.1 170720560 6110302 1498221..1500992 1 NC_010501.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1500992 6110302 PputW619_1374 Pseudomonas putida W619 DNA gyrase subunit A YP_001748248.1 1498221 D 390235 CDS YP_001748249.1 170720561 6110303 1501323..1502330 1 NC_010501.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1502330 6110303 PputW619_1375 Pseudomonas putida W619 phosphoserine aminotransferase YP_001748249.1 1501323 D 390235 CDS YP_001748250.1 170720562 6110304 1502330..1503424 1 NC_010501.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pen:PSEEN1489 bifunctional chorismate mutase/prephenate dehydratase PheA; chorismate mutase 1503424 6110304 PputW619_1376 Pseudomonas putida W619 chorismate mutase YP_001748250.1 1502330 D 390235 CDS YP_001748251.1 170720563 6110305 1503585..1505825 1 NC_010501.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1505825 6110305 PputW619_1377 Pseudomonas putida W619 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase YP_001748251.1 1503585 D 390235 CDS YP_001748252.1 170720564 6110306 1505822..1506508 1 NC_010501.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1506508 cmk 6110306 cmk Pseudomonas putida W619 cytidylate kinase YP_001748252.1 1505822 D 390235 CDS YP_001748253.1 170720565 6110307 1506632..1508308 1 NC_010501.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1508308 rpsA 6110307 rpsA Pseudomonas putida W619 30S ribosomal protein S1 YP_001748253.1 1506632 D 390235 CDS YP_001748254.1 170720566 6110308 1508565..1508861 1 NC_010501.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1508861 ihfB 6110308 ihfB Pseudomonas putida W619 integration host factor subunit beta YP_001748254.1 1508565 D 390235 CDS YP_001748255.1 170720567 6110309 1508882..1509145 1 NC_010501.1 KEGG: pst:PSPTO_1752 hypothetical protein; hypothetical protein 1509145 6110309 PputW619_1381 Pseudomonas putida W619 hypothetical protein YP_001748255.1 1508882 D 390235 CDS YP_001748256.1 170720568 6110310 1509250..1510698 1 NC_010501.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pst:PSPTO_1753 hypothetical protein; beta-lactamase domain-containing protein 1510698 6110310 PputW619_1382 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001748256.1 1509250 D 390235 CDS YP_001748257.1 170720569 6110311 1511009..1512451 1 NC_010501.1 KEGG: pol:Bpro_4942 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1512451 6110311 PputW619_1383 Pseudomonas putida W619 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001748257.1 1511009 D 390235 CDS YP_001748258.1 170720570 6110312 1512582..1513943 1 NC_010501.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: tcx:Tcr_1677 phosphomannomutase; phosphomannomutase 1513943 6110312 PputW619_1384 Pseudomonas putida W619 phosphomannomutase YP_001748258.1 1512582 D 390235 CDS YP_001748259.1 170720571 6110313 1514069..1515265 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4015 glycosyl transferase, group 1; glycosyl transferase group 1 protein 1515265 6110313 PputW619_1385 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748259.1 1514069 D 390235 CDS YP_001748260.1 170720572 6110314 1515378..1516178 1 NC_010501.1 PFAM: ABC-2 type transporter; KEGG: pap:PSPA7_6241 membrane subunit of A-band LPS efflux transporter; ABC-2 type transporter 1516178 6110314 PputW619_1386 Pseudomonas putida W619 ABC-2 type transporter YP_001748260.1 1515378 D 390235 CDS YP_001748261.1 170720573 6110315 1516180..1517388 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2903 ABC-type transporter, ATPase component; ABC transporter-like protein 1517388 6110315 PputW619_1387 Pseudomonas putida W619 ABC transporter-like protein YP_001748261.1 1516180 D 390235 CDS YP_001748262.1 170720574 6110316 1517507..1518940 1 NC_010501.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL4063 hypothetical protein; type 11 methyltransferase 1518940 6110316 PputW619_1388 Pseudomonas putida W619 type 11 methyltransferase YP_001748262.1 1517507 D 390235 CDS YP_001748263.1 170720575 6110317 1518959..1521844 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: rci:RCIX213 predicted glycosyltransferase (group 1); glycosyl transferase group 1 protein 1521844 6110317 PputW619_1389 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748263.1 1518959 D 390235 CDS YP_001748264.1 170720576 6110318 1521841..1523460 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: rci:RCIX212 putative glycosyltransferase (group 1); glycosyl transferase group 1 protein 1523460 6110318 PputW619_1390 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748264.1 1521841 D 390235 CDS YP_001748265.1 170720577 6110319 complement(1523504..1524448) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_5030 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1524448 6110319 PputW619_1391 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001748265.1 1523504 R 390235 CDS YP_001748266.1 170720578 6110320 complement(1524501..1525610) 1 NC_010501.1 PFAM: acyltransferase 3; KEGG: bra:BRADO5246 conserved hypothetical protein; putative membrane protein; putative acyltransferase; acyltransferase 3 1525610 6110320 PputW619_1392 Pseudomonas putida W619 acyltransferase 3 YP_001748266.1 1524501 R 390235 CDS YP_001748267.1 170720579 6110321 1525865..1526797 1 NC_010501.1 KEGG: pmu:PM0525 KpsF protein, putative; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1526797 6110321 PputW619_1393 Pseudomonas putida W619 KpsF/GutQ family protein YP_001748267.1 1525865 D 390235 CDS YP_001748268.1 170720580 6110322 complement(1526918..1527466) 1 NC_010501.1 KEGG: mfa:Mfla_2010 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1527466 6110322 PputW619_1394 Pseudomonas putida W619 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001748268.1 1526918 R 390235 CDS YP_001748269.1 170720581 6110323 complement(1527466..1528356) 1 NC_010501.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: psb:Psyr_0924 glucose-1-phosphate thymidylyltransferase, long form; glucose-1-phosphate thymidylyltransferase 1528356 6110323 PputW619_1395 Pseudomonas putida W619 glucose-1-phosphate thymidylyltransferase YP_001748269.1 1527466 R 390235 CDS YP_001748270.1 170720582 6110324 complement(1528353..1529258) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pst:PSPTO_1080 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1529258 6110324 PputW619_1396 Pseudomonas putida W619 dTDP-4-dehydrorhamnose reductase YP_001748270.1 1528353 R 390235 CDS YP_001748271.1 170720583 6110325 complement(1529255..1530331) 1 NC_010501.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pst:PSPTO_1081 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1530331 6110325 PputW619_1397 Pseudomonas putida W619 dTDP-glucose 4,6-dehydratase YP_001748271.1 1529255 R 390235 CDS YP_001748272.1 170720584 6110326 complement(1530711..1532870) 1 NC_010501.1 KEGG: syw:SYNW0417 hypothetical protein; hypothetical protein 1532870 6110326 PputW619_1398 Pseudomonas putida W619 hypothetical protein YP_001748272.1 1530711 R 390235 CDS YP_001748273.1 170720585 6110327 complement(1532938..1534746) 1 NC_010501.1 PFAM: Capsule polysaccharide biosynthesis protein; KEGG: cko:CKO_00746 hypothetical protein; capsule polysaccharide biosynthesis protein 1534746 6110327 PputW619_1399 Pseudomonas putida W619 capsule polysaccharide biosynthesis protein YP_001748273.1 1532938 R 390235 CDS YP_001748274.1 170720586 6110328 complement(1534743..1535798) 1 NC_010501.1 KEGG: hau:Haur_2166 glycosyl transferase group 1; hypothetical protein 1535798 6110328 PputW619_1400 Pseudomonas putida W619 hypothetical protein YP_001748274.1 1534743 R 390235 CDS YP_001748275.1 170720587 6110329 complement(1535852..1538278) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: psp:PSPPH_0975 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 1538278 6110329 PputW619_1401 Pseudomonas putida W619 glycosyl transferase family protein YP_001748275.1 1535852 R 390235 CDS YP_001748276.1 170720588 6110330 complement(1538278..1540836) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: psb:Psyr_0930 glycosyl transferase, family 2; glycosyl transferase family protein 1540836 6110330 PputW619_1402 Pseudomonas putida W619 glycosyl transferase family protein YP_001748276.1 1538278 R 390235 CDS YP_001748277.1 170720589 6110331 complement(1540982..1542430) 1 NC_010501.1 KEGG: psb:Psyr_0931 hemolysin-type calcium-binding region; hemolysin-type calcium-binding region 1542430 6110331 PputW619_1403 Pseudomonas putida W619 hemolysin-type calcium-binding region YP_001748277.1 1540982 R 390235 CDS YP_001748278.1 170720590 6110332 complement(1542448..1543335) 1 NC_010501.1 KEGG: psb:Psyr_0932 hypothetical protein; hypothetical protein 1543335 6110332 PputW619_1404 Pseudomonas putida W619 hypothetical protein YP_001748278.1 1542448 R 390235 CDS YP_001748279.1 170720591 6110333 1543896..1545707 1 NC_010501.1 KEGG: psp:PSPPH_0980 alkaline protease secretion ATP-binding protein AprD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 1545707 6110333 PputW619_1405 Pseudomonas putida W619 type I secretion system ATPase YP_001748279.1 1543896 D 390235 CDS YP_001748280.1 170720592 6110334 1545720..1547045 1 NC_010501.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: psb:Psyr_0934 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 1547045 6110334 PputW619_1406 Pseudomonas putida W619 HlyD family type I secretion membrane fusion protein YP_001748280.1 1545720 D 390235 CDS YP_001748281.1 170720593 6110335 1547042..1548457 1 NC_010501.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: psb:Psyr_0935 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 1548457 6110335 PputW619_1407 Pseudomonas putida W619 TolC family type I secretion outer membrane protein YP_001748281.1 1547042 D 390235 CDS YP_001748282.1 170720594 6110336 1548725..1549756 1 NC_010501.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: psb:Psyr_0916 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1549756 6110336 PputW619_1408 Pseudomonas putida W619 GDP-mannose 4,6-dehydratase YP_001748282.1 1548725 D 390235 CDS YP_001748283.1 170720595 6110337 1549756..1550652 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: psp:PSPPH_0952 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1550652 6110337 PputW619_1409 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001748283.1 1549756 D 390235 CDS YP_001748284.1 170720596 6110338 1550649..1551794 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: sgl:SG1120 mannosyltransferase B; glycosyl transferase group 1 protein 1551794 6110338 PputW619_1410 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748284.1 1550649 D 390235 CDS YP_001748285.1 170720597 6110339 1551791..1552921 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: sgl:SG1121 glycosyltransferase; glycosyl transferase group 1 protein 1552921 6110339 PputW619_1411 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748285.1 1551791 D 390235 CDS YP_001748286.1 170720598 6110340 1552981..1553949 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1553949 6110340 PputW619_1412 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001748286.1 1552981 D 390235 CDS YP_001748287.1 170720599 6110341 1553946..1554950 1 NC_010501.1 PFAM: glycosyl transferase family 4; KEGG: pen:PSEEN1505 glycosyl transferase WbpL; glycosyl transferase family protein 1554950 6110341 PputW619_1413 Pseudomonas putida W619 glycosyl transferase family protein YP_001748287.1 1553946 D 390235 CDS YP_001748288.1 170720600 6110342 1554995..1557004 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: pen:PSEEN1506 dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM; polysaccharide biosynthesis protein CapD 1557004 6110342 PputW619_1414 Pseudomonas putida W619 polysaccharide biosynthesis protein CapD YP_001748288.1 1554995 D 390235 CDS YP_001748289.1 170720601 6110343 1557191..1557523 1 NC_010501.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: pen:PSEEN1508 hypothetical protein; helix-hairpin-helix repeat-containing competence protein ComEA 1557523 6110343 PputW619_1415 Pseudomonas putida W619 helix-hairpin-helix repeat-containing competence protein ComEA YP_001748289.1 1557191 D 390235 CDS YP_001748290.1 170720602 6110344 complement(1557613..1557780) 1 NC_010501.1 KEGG: pen:PSEEN1509 hypothetical protein; hypothetical protein 1557780 6110344 PputW619_1416 Pseudomonas putida W619 hypothetical protein YP_001748290.1 1557613 R 390235 CDS YP_001748291.1 170720603 6110345 1557964..1558665 1 NC_010501.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1558665 6110345 PputW619_1417 Pseudomonas putida W619 orotidine 5'-phosphate decarboxylase YP_001748291.1 1557964 D 390235 CDS YP_001748292.1 170720604 6110346 1558783..1559976 1 NC_010501.1 PFAM: O-antigen polymerase; KEGG: pae:PA4999 O-antigen ligase, WaaL; O-antigen polymerase 1559976 6110346 PputW619_1418 Pseudomonas putida W619 O-antigen polymerase YP_001748292.1 1558783 D 390235 CDS YP_001748293.1 170720605 6110347 complement(1559973..1560863) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pap:PSPA7_5735 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 1560863 6110347 PputW619_1419 Pseudomonas putida W619 glycosyl transferase family protein YP_001748293.1 1559973 R 390235 CDS YP_001748294.1 170720606 6110348 1561364..1561645 1 NC_010501.1 hypothetical protein 1561645 6110348 PputW619_1420 Pseudomonas putida W619 hypothetical protein YP_001748294.1 1561364 D 390235 CDS YP_001748295.1 170720607 6110349 1561659..1561922 1 NC_010501.1 KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 1561922 6110349 PputW619_1421 Pseudomonas putida W619 hypothetical protein YP_001748295.1 1561659 D 390235 CDS YP_001748296.1 170720608 6110350 complement(1562054..1562896) 1 NC_010501.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1562896 6110350 PputW619_1422 Pseudomonas putida W619 2-dehydro-3-deoxyphosphooctonate aldolase YP_001748296.1 1562054 R 390235 CDS YP_001748297.1 170720609 6110351 complement(1562933..1563772) 1 NC_010501.1 KEGG: pen:PSEEN1513 hypothetical protein; hypothetical protein 1563772 6110351 PputW619_1423 Pseudomonas putida W619 hypothetical protein YP_001748297.1 1562933 R 390235 CDS YP_001748298.1 170720610 6110352 complement(1563910..1564911) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pen:PSEEN1511 zinc-containing alcohol dehydrogenase; alcohol dehydrogenase 1564911 6110352 PputW619_1424 Pseudomonas putida W619 alcohol dehydrogenase YP_001748298.1 1563910 R 390235 CDS YP_001748299.1 170720611 6110353 1565128..1565889 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1512 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1565889 6110353 PputW619_1425 Pseudomonas putida W619 short chain dehydrogenase YP_001748299.1 1565128 D 390235 CDS YP_001748300.1 170720612 6110354 1566012..1566293 1 NC_010501.1 KEGG: pen:PSEEN3527 lipoprotein; lipoprotein 1566293 6110354 PputW619_1426 Pseudomonas putida W619 lipoprotein YP_001748300.1 1566012 D 390235 CDS YP_001748301.1 170720613 6110355 1566536..1568476 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1517 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1568476 6110355 PputW619_1427 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001748301.1 1566536 D 390235 CDS YP_001748302.1 170720614 6110356 complement(1568600..1569790) 1 NC_010501.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1518 benzoate membrane transport protein (MFS superfamily); benzoate transporter 1569790 6110356 PputW619_1428 Pseudomonas putida W619 benzoate transporter YP_001748302.1 1568600 R 390235 CDS YP_001748303.1 170720615 6110357 1569935..1570537 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1519 glutathione S-transferase; glutathione S-transferase domain-containing protein 1570537 6110357 PputW619_1429 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001748303.1 1569935 D 390235 CDS YP_001748304.1 170720616 6110358 complement(1572440..1572811) 1 NC_010501.1 PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1520 hypothetical protein; glutaredoxin 1572811 6110358 PputW619_1430 Pseudomonas putida W619 glutaredoxin YP_001748304.1 1572440 R 390235 CDS YP_001748305.1 170720617 6110359 complement(1572869..1573414) 1 NC_010501.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1573414 folE 6110359 folE Pseudomonas putida W619 GTP cyclohydrolase I YP_001748305.1 1572869 R 390235 CDS YP_001748306.1 170720618 6110360 complement(1573485..1574045) 1 NC_010501.1 PFAM: Smr protein/MutS2; KEGG: pen:PSEEN1522 hypothetical protein; Smr protein/MutS2 1574045 6110360 PputW619_1432 Pseudomonas putida W619 Smr protein/MutS2 YP_001748306.1 1573485 R 390235 CDS YP_001748307.1 170720619 6110361 complement(1574142..1574462) 1 NC_010501.1 KEGG: pen:PSEEN1523 hypothetical protein; hypothetical protein 1574462 6110361 PputW619_1433 Pseudomonas putida W619 hypothetical protein YP_001748307.1 1574142 R 390235 CDS YP_001748308.1 170720620 6110362 complement(1574552..1575142) 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN1524 isochorismatase; isochorismatase hydrolase 1575142 6110362 PputW619_1434 Pseudomonas putida W619 isochorismatase hydrolase YP_001748308.1 1574552 R 390235 CDS YP_001748309.1 170720621 6110363 1575322..1576230 1 NC_010501.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1576230 6110363 PputW619_1435 Pseudomonas putida W619 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001748309.1 1575322 D 390235 CDS YP_001748310.1 170720622 6110364 complement(1576313..1577101) 1 NC_010501.1 KEGG: pen:PSEEN1526 hypothetical protein; hypothetical protein 1577101 6110364 PputW619_1436 Pseudomonas putida W619 hypothetical protein YP_001748310.1 1576313 R 390235 CDS YP_001748311.1 170720623 6110365 complement(1577183..1578145) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1527 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 1578145 6110365 PputW619_1437 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748311.1 1577183 R 390235 CDS YP_001748312.1 170720624 6110366 1578318..1579409 1 NC_010501.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1579409 6110366 PputW619_1438 Pseudomonas putida W619 chorismate synthase YP_001748312.1 1578318 D 390235 CDS YP_001748313.1 170720625 6110367 1579559..1580713 1 NC_010501.1 PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1530 transporter, MFS family; major facilitator transporter 1580713 6110367 PputW619_1439 Pseudomonas putida W619 major facilitator transporter YP_001748313.1 1579559 D 390235 CDS YP_001748314.1 170720626 6110368 1580713..1581249 1 NC_010501.1 KEGG: pen:PSEEN1531 oxidase; oxidase 1581249 6110368 PputW619_1440 Pseudomonas putida W619 oxidase YP_001748314.1 1580713 D 390235 CDS YP_001748315.1 170720627 6110369 complement(1581367..1581639) 1 NC_010501.1 KEGG: pen:PSEEN1532 hypothetical protein; hypothetical protein 1581639 6110369 PputW619_1441 Pseudomonas putida W619 hypothetical protein YP_001748315.1 1581367 R 390235 CDS YP_001748316.1 170720628 6110370 1581908..1582432 1 NC_010501.1 PFAM: Ankyrin; KEGG: pen:PSEEN1535 hypothetical protein; ankyrin 1582432 6110370 PputW619_1442 Pseudomonas putida W619 ankyrin YP_001748316.1 1581908 D 390235 CDS YP_001748317.1 170720629 6110371 1582492..1583022 1 NC_010501.1 KEGG: pen:PSEEN1536 hypothetical protein; hypothetical protein 1583022 6110371 PputW619_1443 Pseudomonas putida W619 hypothetical protein YP_001748317.1 1582492 D 390235 CDS YP_001748318.1 170720630 6110372 1583290..1583574 1 NC_010501.1 hypothetical protein 1583574 6110372 PputW619_1444 Pseudomonas putida W619 hypothetical protein YP_001748318.1 1583290 D 390235 CDS YP_001748319.1 170720631 6110373 complement(1583943..1584881) 1 NC_010501.1 PFAM: zinc/iron permease; KEGG: pen:PSEEN1537 divalent heavy-metal cations transporter (ZIP family); zinc/iron permease 1584881 6110373 PputW619_1445 Pseudomonas putida W619 zinc/iron permease YP_001748319.1 1583943 R 390235 CDS YP_001748320.1 170720632 6110374 1585008..1585202 1 NC_010501.1 KEGG: pen:PSEEN1538 hypothetical protein; hypothetical protein 1585202 6110374 PputW619_1446 Pseudomonas putida W619 hypothetical protein YP_001748320.1 1585008 D 390235 CDS YP_001748321.1 170720633 6110375 1585351..1587423 1 NC_010501.1 PFAM: sulfatase; KEGG: pen:PSEEN1540 membrane sulfatase; sulfatase 1587423 6110375 PputW619_1447 Pseudomonas putida W619 sulfatase YP_001748321.1 1585351 D 390235 CDS YP_001748322.1 170720634 6110376 1587639..1587875 1 NC_010501.1 KEGG: pen:PSEEN1541 hypothetical protein; hypothetical protein 1587875 6110376 PputW619_1448 Pseudomonas putida W619 hypothetical protein YP_001748322.1 1587639 D 390235 CDS YP_001748323.1 170720635 6110377 1588051..1588383 1 NC_010501.1 PFAM: protein of unknown function DUF1260; KEGG: pen:PSEEN1542 hypothetical protein; hypothetical protein 1588383 6110377 PputW619_1449 Pseudomonas putida W619 hypothetical protein YP_001748323.1 1588051 D 390235 CDS YP_001748324.1 170720636 6110378 complement(1588442..1589242) 1 NC_010501.1 KEGG: pen:PSEEN1543 cytochrome c; cytochrome c 1589242 6110378 PputW619_1450 Pseudomonas putida W619 cytochrome c YP_001748324.1 1588442 R 390235 CDS YP_001748325.1 170720637 6110379 1589769..1590503 1 NC_010501.1 PFAM: glutamine amidotransferase class-I; KEGG: pen:PSEEN1544 glutamine amidotransferase, class I; amidotransferase 1590503 6110379 PputW619_1451 Pseudomonas putida W619 amidotransferase YP_001748325.1 1589769 D 390235 CDS YP_001748326.1 170720638 6110380 complement(1590536..1591507) 1 NC_010501.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1545 magnesium/cobalt transporter, MIT family; Mg2 transporter protein CorA family protein 1591507 6110380 PputW619_1452 Pseudomonas putida W619 Mg2 transporter protein CorA family protein YP_001748326.1 1590536 R 390235 CDS YP_001748327.1 170720639 6110381 complement(1591571..1592290) 1 NC_010501.1 KEGG: pen:PSEEN1546 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1592290 6110381 PputW619_1453 Pseudomonas putida W619 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001748327.1 1591571 R 390235 CDS YP_001748328.1 170720640 6110382 complement(1592408..1593097) 1 NC_010501.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1593097 6110382 PputW619_1454 Pseudomonas putida W619 enoyl-CoA hydratase YP_001748328.1 1592408 R 390235 CDS YP_001748329.1 170720641 6110384 complement(1593590..1594486) 1 NC_010501.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: spe:Spro_2089 phosphogluconate dehydrogenase, NAD-binding, putative-like protein; phosphogluconate dehydrogenase 1594486 6110384 PputW619_1455 Pseudomonas putida W619 phosphogluconate dehydrogenase YP_001748329.1 1593590 R 390235 CDS YP_001748330.1 170720642 6110385 complement(1594562..1595788) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pfl:PFL_1440 phenylacetic acid-specific porin; outer membrane porin 1595788 6110385 PputW619_1456 Pseudomonas putida W619 outer membrane porin YP_001748330.1 1594562 R 390235 CDS YP_001748331.1 170720643 6110386 complement(1595858..1597174) 1 NC_010501.1 PFAM: sodium:dicarboxylate symporter; KEGG: bch:Bcen2424_2873 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1597174 6110386 PputW619_1457 Pseudomonas putida W619 sodium:dicarboxylate symporter YP_001748331.1 1595858 R 390235 CDS YP_001748332.1 170720644 6110387 complement(1597227..1598090) 1 NC_010501.1 PFAM: amidohydrolase 2; KEGG: bja:blr3839 putative dicarboxylic acid hydrolase; amidohydrolase 2 1598090 6110387 PputW619_1458 Pseudomonas putida W619 amidohydrolase 2 YP_001748332.1 1597227 R 390235 CDS YP_001748333.1 170720645 6110388 complement(1598172..1599107) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2546 putative nitrogen assimilation regulatory protein; LysR family transcriptional regulator 1599107 6110388 PputW619_1459 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748333.1 1598172 R 390235 CDS YP_001748334.1 170720646 6110389 complement(1599231..1601369) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1548 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor 1601369 6110389 PputW619_1460 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001748334.1 1599231 R 390235 CDS YP_001748335.1 170720647 6110390 complement(1601492..1601872) 1 NC_010501.1 KEGG: pen:PSEEN1549 hypothetical protein; hypothetical protein 1601872 6110390 PputW619_1461 Pseudomonas putida W619 hypothetical protein YP_001748335.1 1601492 R 390235 CDS YP_001748336.1 170720648 6110391 complement(1601968..1603161) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1555 transport protein (MFS superfamily); major facilitator transporter 1603161 6110391 PputW619_1462 Pseudomonas putida W619 major facilitator transporter YP_001748336.1 1601968 R 390235 CDS YP_001748337.1 170720649 6110392 complement(1603242..1603991) 1 NC_010501.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1603991 fabG 6110392 fabG Pseudomonas putida W619 3-ketoacyl-ACP reductase YP_001748337.1 1603242 R 390235 CDS YP_001748338.1 170720650 6110393 1604067..1605044 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1558 transcriptional regulator, LysR family; LysR family transcriptional regulator 1605044 6110393 PputW619_1464 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748338.1 1604067 D 390235 CDS YP_001748339.1 170720651 6110394 complement(1605423..1605893) 1 NC_010501.1 KEGG: pen:PSEEN1559 hypothetical protein; GreA/GreB family elongation factor 1605893 6110394 PputW619_1465 Pseudomonas putida W619 GreA/GreB family elongation factor YP_001748339.1 1605423 R 390235 CDS YP_001748340.1 170720652 6110395 complement(1605896..1606288) 1 NC_010501.1 KEGG: pen:PSEEN1560 hypothetical protein; hypothetical protein 1606288 6110395 PputW619_1466 Pseudomonas putida W619 hypothetical protein YP_001748340.1 1605896 R 390235 CDS YP_001748341.1 170720653 6110396 1606419..1607552 1 NC_010501.1 KEGG: pen:PSEEN1561 hypothetical protein; hypothetical protein 1607552 6110396 PputW619_1467 Pseudomonas putida W619 hypothetical protein YP_001748341.1 1606419 D 390235 CDS YP_001748342.1 170720654 6110397 1607601..1608170 1 NC_010501.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1608170 6110397 PputW619_1468 Pseudomonas putida W619 elongation factor P YP_001748342.1 1607601 D 390235 CDS YP_001748343.1 170720655 6110398 complement(1608229..1608657) 1 NC_010501.1 PFAM: OsmC family protein; KEGG: pen:PSEEN1563 organic hydroperoxide resistance protein; OsmC family protein 1608657 6110398 PputW619_1469 Pseudomonas putida W619 OsmC family protein YP_001748343.1 1608229 R 390235 CDS YP_001748344.1 170720656 6110399 complement(1608799..1609254) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN1564 transcriptional regulator (MarR family); MarR family transcriptional regulator 1609254 6110399 PputW619_1470 Pseudomonas putida W619 MarR family transcriptional regulator YP_001748344.1 1608799 R 390235 CDS YP_001748345.1 170720657 6110400 complement(1609310..1610266) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1565 transcriptional regulator, LysR family; LysR family transcriptional regulator 1610266 6110400 PputW619_1471 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748345.1 1609310 R 390235 CDS YP_001748346.1 170720658 6110401 1610344..1611129 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1566 hypothetical protein; hypothetical protein 1611129 6110401 PputW619_1472 Pseudomonas putida W619 hypothetical protein YP_001748346.1 1610344 D 390235 CDS YP_001748347.1 170720659 6110402 complement(1611148..1611999) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1567 transcriptional regulator, LysR family; LysR family transcriptional regulator 1611999 6110402 PputW619_1473 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748347.1 1611148 R 390235 CDS YP_001748348.1 170720660 6110403 1612096..1612314 1 NC_010501.1 PFAM: protein of unknown function DUF1127; KEGG: pen:PSEEN1568 hypothetical protein; hypothetical protein 1612314 6110403 PputW619_1474 Pseudomonas putida W619 hypothetical protein YP_001748348.1 1612096 D 390235 CDS YP_001748349.1 170720661 6110404 complement(1612383..1613729) 1 NC_010501.1 KEGG: pen:PSEEN1570 phospho-2-dehydro-3-deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 1613729 6110404 PputW619_1475 Pseudomonas putida W619 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001748349.1 1612383 R 390235 CDS YP_001748350.1 170720662 6110405 1613815..1614603 1 NC_010501.1 KEGG: pen:PSEEN1571 hypothetical protein; hypothetical protein 1614603 6110405 PputW619_1476 Pseudomonas putida W619 hypothetical protein YP_001748350.1 1613815 D 390235 CDS YP_001748351.1 170720663 6110406 1615072..1616751 1 NC_010501.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1572 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1616751 6110406 PputW619_1477 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001748351.1 1615072 D 390235 CDS YP_001748352.1 170720664 6110407 complement(1616866..1617633) 1 NC_010501.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN1580 aromatic ring-opening dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B 1617633 6110407 PputW619_1478 Pseudomonas putida W619 extradiol ring-cleavage dioxygenase class III protein subunit B YP_001748352.1 1616866 R 390235 CDS YP_001748353.1 170720665 6110408 1617735..1618382 1 NC_010501.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1618382 6110408 PputW619_1479 Pseudomonas putida W619 thiopurine S-methyltransferase YP_001748353.1 1617735 D 390235 CDS YP_001748354.1 170720666 6110409 complement(1618526..1619413) 1 NC_010501.1 putative metalloprotease; heat shock protein HtpX 1619413 6110409 PputW619_1480 Pseudomonas putida W619 heat shock protein HtpX YP_001748354.1 1618526 R 390235 CDS YP_001748355.1 170720667 6110410 complement(1619706..1620917) 1 NC_010501.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 1620917 6110410 PputW619_1481 Pseudomonas putida W619 aminotransferase AlaT YP_001748355.1 1619706 R 390235 CDS YP_001748356.1 170720668 6110411 1621086..1621487 1 NC_010501.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1621487 6110411 PputW619_1482 Pseudomonas putida W619 methionine sulfoxide reductase B YP_001748356.1 1621086 D 390235 CDS YP_001748357.1 170720669 6110412 1621490..1621978 1 NC_010501.1 PFAM: glutathione peroxidase; KEGG: pen:PSEEN1585 glutathione peroxidase; glutathione peroxidase 1621978 6110412 PputW619_1483 Pseudomonas putida W619 glutathione peroxidase YP_001748357.1 1621490 D 390235 CDS YP_001748358.1 170720670 6110413 complement(1621968..1624325) 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1586 sensor histidine kinase/response regulator hybrid; histidine kinase 1624325 6110413 PputW619_1484 Pseudomonas putida W619 histidine kinase YP_001748358.1 1621968 R 390235 CDS YP_001748359.1 170720671 6110414 1624402..1625289 1 NC_010501.1 PFAM: protein of unknown function DUF815; KEGG: pen:PSEEN1587 hypothetical protein; hypothetical protein 1625289 6110414 PputW619_1485 Pseudomonas putida W619 hypothetical protein YP_001748359.1 1624402 D 390235 CDS YP_001748360.1 170720672 6110415 1625290..1625772 1 NC_010501.1 KEGG: pen:PSEEN1588 hypothetical protein; hypothetical protein 1625772 6110415 PputW619_1486 Pseudomonas putida W619 hypothetical protein YP_001748360.1 1625290 D 390235 CDS YP_001748361.1 170720673 6110416 complement(1625866..1626633) 1 NC_010501.1 KEGG: pen:PSEEN1589 hypothetical protein; hypothetical protein 1626633 6110416 PputW619_1487 Pseudomonas putida W619 hypothetical protein YP_001748361.1 1625866 R 390235 CDS YP_001748362.1 170720674 6110422 complement(1627559..1629025) 1 NC_010501.1 KEGG: psb:Psyr_2035 hypothetical protein; hypothetical protein 1629025 6110422 PputW619_1488 Pseudomonas putida W619 hypothetical protein YP_001748362.1 1627559 R 390235 CDS YP_001748363.1 170720675 6110423 complement(1629107..1631296) 1 NC_010501.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: psb:Psyr_2034 outer membrane autotransporter barrel; outer membrane autotransporter 1631296 6110423 PputW619_1489 Pseudomonas putida W619 outer membrane autotransporter YP_001748363.1 1629107 R 390235 CDS YP_001748364.1 170720676 6110424 complement(1631482..1633476) 1 NC_010501.1 KEGG: psb:Psyr_2033 hypothetical protein; hypothetical protein 1633476 6110424 PputW619_1490 Pseudomonas putida W619 hypothetical protein YP_001748364.1 1631482 R 390235 CDS YP_001748365.1 170720677 6110425 complement(1634063..1639039) 1 NC_010501.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2040 YD repeat; YD repeat-containing protein 1639039 6110425 PputW619_1491 Pseudomonas putida W619 YD repeat-containing protein YP_001748365.1 1634063 R 390235 CDS YP_001748366.1 170720678 6110426 1639227..1641080 1 NC_010501.1 KEGG: pst:PSPTO_2232 hypothetical protein; hypothetical protein 1641080 6110426 PputW619_1492 Pseudomonas putida W619 hypothetical protein YP_001748366.1 1639227 D 390235 CDS YP_001748367.1 170720679 6110427 1641167..1643692 1 NC_010501.1 KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein 1643692 6110427 PputW619_1493 Pseudomonas putida W619 hypothetical protein YP_001748367.1 1641167 D 390235 CDS YP_001748368.1 170720680 6110428 1643689..1645974 1 NC_010501.1 KEGG: pst:PSPTO_2236 hypothetical protein; hypothetical protein 1645974 6110428 PputW619_1494 Pseudomonas putida W619 hypothetical protein YP_001748368.1 1643689 D 390235 CDS YP_001748369.1 170720681 6110429 1646004..1648889 1 NC_010501.1 KEGG: psb:Psyr_2042 hypothetical protein; hypothetical protein 1648889 6110429 PputW619_1495 Pseudomonas putida W619 hypothetical protein YP_001748369.1 1646004 D 390235 CDS YP_001748370.1 170720682 6110430 1648952..1649446 1 NC_010501.1 KEGG: pst:PSPTO_2238 lipoprotein, putative; putative lipoprotein 1649446 6110430 PputW619_1496 Pseudomonas putida W619 putative lipoprotein YP_001748370.1 1648952 D 390235 CDS YP_001748371.1 170720683 6110431 1649471..1653322 1 NC_010501.1 PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2044 YD repeat; YD repeat-/RHS repeat-containing protein 1653322 6110431 PputW619_1497 Pseudomonas putida W619 YD repeat-/RHS repeat-containing protein YP_001748371.1 1649471 D 390235 CDS YP_001748372.1 170720684 6110432 complement(1653400..1654479) 1 NC_010501.1 PFAM: Fimbrial protein; KEGG: pst:PSPTO_2227 fimbrial protein, putative; fimbrial protein 1654479 6110432 PputW619_1498 Pseudomonas putida W619 fimbrial protein YP_001748372.1 1653400 R 390235 CDS YP_001748373.1 170720685 6110433 complement(1654546..1657044) 1 NC_010501.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pst:PSPTO_2228 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein 1657044 6110433 PputW619_1499 Pseudomonas putida W619 fimbrial biogenesis outer membrane usher protein YP_001748373.1 1654546 R 390235 CDS YP_001748374.1 170720686 6110434 complement(1657078..1657815) 1 NC_010501.1 PFAM: pili assembly chaperone; KEGG: psb:Psyr_2038 pili assembly chaperone:bacterial pili assembly chaperone; pili assembly chaperone 1657815 6110434 PputW619_1500 Pseudomonas putida W619 pili assembly chaperone YP_001748374.1 1657078 R 390235 CDS YP_001748375.1 170720687 6110435 complement(1657877..1658422) 1 NC_010501.1 PFAM: Fimbrial protein; KEGG: pst:PSPTO_2230 type I pilus biogensis protein FimA; fimbrial protein 1658422 6110435 PputW619_1501 Pseudomonas putida W619 fimbrial protein YP_001748375.1 1657877 R 390235 CDS YP_001748376.1 170720688 6110436 complement(1658614..1659105) 1 NC_010501.1 KEGG: pen:PSEEN1593 hypothetical protein; hypothetical protein 1659105 6110436 PputW619_1502 Pseudomonas putida W619 hypothetical protein YP_001748376.1 1658614 R 390235 CDS YP_001748377.1 170720689 6110437 complement(1659102..1661549) 1 NC_010501.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 1661549 fadE 6110437 fadE Pseudomonas putida W619 acyl-CoA dehydrogenase YP_001748377.1 1659102 R 390235 CDS YP_001748378.1 170720690 6110438 1661773..1662396 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1595 glutathione S-transferase; glutathione S-transferase domain-containing protein 1662396 6110438 PputW619_1504 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001748378.1 1661773 D 390235 CDS YP_001748379.1 170720691 6110439 1662529..1663461 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1596 ABC transporter, ATP-binding protein; ABC transporter-like protein 1663461 6110439 PputW619_1505 Pseudomonas putida W619 ABC transporter-like protein YP_001748379.1 1662529 D 390235 CDS YP_001748380.1 170720692 6110440 1663458..1664237 1 NC_010501.1 PFAM: ABC-2 type transporter; KEGG: pen:PSEEN1597 ABC transporter, permease protein; ABC-2 type transporter 1664237 6110440 PputW619_1506 Pseudomonas putida W619 ABC-2 type transporter YP_001748380.1 1663458 D 390235 CDS YP_001748381.1 170720693 6110441 complement(1664121..1664747) 1 NC_010501.1 KEGG: pen:PSEEN1598 hypothetical protein; hypothetical protein 1664747 6110441 PputW619_1507 Pseudomonas putida W619 hypothetical protein YP_001748381.1 1664121 R 390235 CDS YP_001748382.1 170720694 6110442 1664890..1667103 1 NC_010501.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: psb:Psyr_1632 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1667103 6110442 PputW619_1508 Pseudomonas putida W619 DNA internalization-related competence protein ComEC/Rec2 YP_001748382.1 1664890 D 390235 CDS YP_001748383.1 170720695 6110443 1667215..1667850 1 NC_010501.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN1601 transporter, MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1667850 6110443 PputW619_1509 Pseudomonas putida W619 MotA/TolQ/ExbB proton channel YP_001748383.1 1667215 D 390235 CDS YP_001748384.1 170720696 6110444 1667847..1668281 1 NC_010501.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN1602 biopolymer transport protein ExbD/TolR family; biopolymer transport protein ExbD/TolR 1668281 6110444 PputW619_1510 Pseudomonas putida W619 biopolymer transport protein ExbD/TolR YP_001748384.1 1667847 D 390235 CDS YP_001748385.1 170720697 6110445 1668281..1669291 1 NC_010501.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1669291 lpxK 6110445 lpxK Pseudomonas putida W619 tetraacyldisaccharide 4'-kinase YP_001748385.1 1668281 D 390235 CDS YP_001748386.1 170720698 6110446 1669336..1669521 1 NC_010501.1 PFAM: protein of unknown function DUF343; KEGG: pen:PSEEN1604 hypothetical protein; hypothetical protein 1669521 6110446 PputW619_1512 Pseudomonas putida W619 hypothetical protein YP_001748386.1 1669336 D 390235 CDS YP_001748387.1 170720699 6110447 1669518..1670282 1 NC_010501.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1670282 6110447 PputW619_1513 Pseudomonas putida W619 3-deoxy-manno-octulosonate cytidylyltransferase YP_001748387.1 1669518 D 390235 CDS YP_001748388.1 170720700 6110448 1670282..1670746 1 NC_010501.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN1606 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1670746 6110448 PputW619_1514 Pseudomonas putida W619 protein tyrosine phosphatase YP_001748388.1 1670282 D 390235 CDS YP_001748389.1 170720701 6110449 1670743..1671762 1 NC_010501.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1671762 murB 6110449 murB Pseudomonas putida W619 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001748389.1 1670743 D 390235 CDS YP_001748390.1 170720702 6110450 complement(1671844..1675062) 1 NC_010501.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1608 ribonuclease E Rne; ribonuclease 1675062 6110450 PputW619_1516 Pseudomonas putida W619 ribonuclease YP_001748390.1 1671844 R 390235 CDS YP_001748391.1 170720703 6110451 1675829..1676830 1 NC_010501.1 KEGG: pen:PSEEN1609 23S rRNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1676830 6110451 PputW619_1517 Pseudomonas putida W619 RluA family pseudouridine synthase YP_001748391.1 1675829 D 390235 CDS YP_001748392.1 170720704 6110452 1676834..1677514 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1610 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1677514 6110452 PputW619_1518 Pseudomonas putida W619 HAD family hydrolase YP_001748392.1 1676834 D 390235 CDS YP_001748393.1 170720705 6110453 1677517..1678542 1 NC_010501.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pen:PSEEN1611 peptidase SppA; signal peptide peptidase SppA, 36K type 1678542 6110453 PputW619_1519 Pseudomonas putida W619 signal peptide peptidase SppA, 36K type YP_001748393.1 1677517 D 390235 CDS YP_001748394.1 170720706 6110454 complement(1678635..1679213) 1 NC_010501.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1679213 6110454 PputW619_1520 Pseudomonas putida W619 Maf-like protein YP_001748394.1 1678635 R 390235 CDS YP_001748395.1 170720707 6110455 1679310..1679837 1 NC_010501.1 PFAM: protein of unknown function DUF177; KEGG: pen:PSEEN1614 hypothetical protein; hypothetical protein 1679837 6110455 PputW619_1521 Pseudomonas putida W619 hypothetical protein YP_001748395.1 1679310 D 390235 CDS YP_001748396.1 170720708 6110456 1679851..1680033 1 NC_010501.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1680033 rpmF 6110456 rpmF Pseudomonas putida W619 50S ribosomal protein L32 YP_001748396.1 1679851 D 390235 CDS YP_001748397.1 170720709 6110457 1680067..1681047 1 NC_010501.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1681047 6110457 PputW619_1523 Pseudomonas putida W619 putative glycerol-3-phosphate acyltransferase PlsX YP_001748397.1 1680067 D 390235 CDS YP_001748398.1 170720710 6110458 1681175..1682113 1 NC_010501.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pen:PSEEN1617 malonyl-CoA-[acyl-carrier-protein] transacylase; malonyl CoA-acyl carrier protein transacylase 1682113 6110458 PputW619_1524 Pseudomonas putida W619 malonyl CoA-acyl carrier protein transacylase YP_001748398.1 1681175 D 390235 CDS YP_001748399.1 170720711 6110459 1682130..1682870 1 NC_010501.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1682870 fabG 6110459 fabG Pseudomonas putida W619 3-ketoacyl-ACP reductase YP_001748399.1 1682130 D 390235 CDS YP_001748400.1 170720712 6110460 1683074..1683310 1 NC_010501.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1683310 acpP 6110460 acpP Pseudomonas putida W619 acyl carrier protein YP_001748400.1 1683074 D 390235 CDS YP_001748401.1 170720713 6110461 1683485..1684729 1 NC_010501.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1684729 6110461 PputW619_1527 Pseudomonas putida W619 3-oxoacyl-(acyl carrier protein) synthase II YP_001748401.1 1683485 D 390235 CDS YP_001748402.1 170720714 6110462 1684729..1685544 1 NC_010501.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1685544 6110462 PputW619_1528 Pseudomonas putida W619 4-amino-4-deoxychorismate lyase YP_001748402.1 1684729 D 390235 CDS YP_001748403.1 170720715 6110463 1685549..1686712 1 NC_010501.1 PFAM: aminodeoxychorismate lyase; KEGG: pen:PSEEN1623 hypothetical protein; aminodeoxychorismate lyase 1686712 6110463 PputW619_1529 Pseudomonas putida W619 aminodeoxychorismate lyase YP_001748403.1 1685549 D 390235 CDS YP_001748404.1 170720716 6110464 1686731..1687354 1 NC_010501.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1687354 tmk 6110464 tmk Pseudomonas putida W619 thymidylate kinase YP_001748404.1 1686731 D 390235 CDS YP_001748405.1 170720717 6110465 1687347..1688333 1 NC_010501.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1688333 6110465 PputW619_1531 Pseudomonas putida W619 DNA polymerase III subunit delta' YP_001748405.1 1687347 D 390235 CDS YP_001748406.1 170720718 6110466 1688364..1689146 1 NC_010501.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1627 deoxyribonuclease, TatD family; TatD family hydrolase 1689146 6110466 PputW619_1532 Pseudomonas putida W619 TatD family hydrolase YP_001748406.1 1688364 D 390235 CDS YP_001748407.1 170720719 6110467 complement(1689418..1690551) 1 NC_010501.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN1628 hypothetical protein; class V aminotransferase 1690551 6110467 PputW619_1533 Pseudomonas putida W619 class V aminotransferase YP_001748407.1 1689418 R 390235 CDS YP_001748408.1 170720720 6110468 1690623..1691258 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1629 transcriptional regulator, TetR family; TetR family transcriptional regulator 1691258 6110468 PputW619_1534 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748408.1 1690623 D 390235 CDS YP_001748409.1 170720721 6110469 1691366..1692334 1 NC_010501.1 PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN1630 molybdenum cofactor biosynthesis protein A; molybdenum cofactor synthesis domain-containing protein 1692334 6110469 PputW619_1535 Pseudomonas putida W619 molybdenum cofactor synthesis domain-containing protein YP_001748409.1 1691366 D 390235 CDS YP_001748410.1 170720722 6110470 1692400..1693005 1 NC_010501.1 KEGG: pen:PSEEN1631 lipoprotein; lipoprotein 1693005 6110470 PputW619_1536 Pseudomonas putida W619 lipoprotein YP_001748410.1 1692400 D 390235 CDS YP_001748411.1 170720723 6110471 1693016..1693576 1 NC_010501.1 PFAM: protein of unknown function DUF1285; KEGG: pen:PSEEN1632 hypothetical protein; hypothetical protein 1693576 6110471 PputW619_1537 Pseudomonas putida W619 hypothetical protein YP_001748411.1 1693016 D 390235 CDS YP_001748412.1 170720724 6110473 complement(1693787..1694983) 1 NC_010501.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1694983 6110473 PputW619_1538 Pseudomonas putida W619 aromatic amino acid aminotransferase YP_001748412.1 1693787 R 390235 CDS YP_001748413.1 170720725 6110474 1695271..1697286 1 NC_010501.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1697286 6110474 PputW619_1539 Pseudomonas putida W619 excinuclease ABC subunit B YP_001748413.1 1695271 D 390235 CDS YP_001748414.1 170720726 6110475 1697432..1698913 1 NC_010501.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1698913 gltX 6110475 gltX Pseudomonas putida W619 glutamyl-tRNA synthetase YP_001748414.1 1697432 D 390235 CDS YP_001748415.1 170720727 6110482 1700057..1700596 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1643 transcriptional regulator, TetR family; TetR family transcriptional regulator 1700596 6110482 PputW619_1541 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748415.1 1700057 D 390235 CDS YP_001748416.1 170720728 6110483 1700620..1701453 1 NC_010501.1 KEGG: pen:PSEEN1644 hydrolase; hydrolase 1701453 6110483 PputW619_1542 Pseudomonas putida W619 hydrolase YP_001748416.1 1700620 D 390235 CDS YP_001748417.1 170720729 6110484 1701497..1701931 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN1645 hypothetical protein; thioesterase superfamily protein 1701931 6110484 PputW619_1543 Pseudomonas putida W619 thioesterase superfamily protein YP_001748417.1 1701497 D 390235 CDS YP_001748418.1 170720730 6110485 1701983..1702954 1 NC_010501.1 PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN1646 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1702954 6110485 PputW619_1544 Pseudomonas putida W619 dihydrouridine synthase DuS YP_001748418.1 1701983 D 390235 CDS YP_001748419.1 170720731 6110486 1703103..1703546 1 NC_010501.1 PFAM: heat shock protein Hsp20; KEGG: pen:PSEEN1647 small heat-shock protein IbpA; heat shock protein Hsp20 1703546 6110486 PputW619_1545 Pseudomonas putida W619 heat shock protein Hsp20 YP_001748419.1 1703103 D 390235 CDS YP_001748420.1 170720732 6110487 complement(1703666..1706962) 1 NC_010501.1 KEGG: pen:PSEEN1648 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1706962 6110487 PputW619_1546 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001748420.1 1703666 R 390235 CDS YP_001748421.1 170720733 6110488 complement(1707024..1707902) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1649 transcriptional regulator, LysR family; LysR family transcriptional regulator 1707902 6110488 PputW619_1547 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748421.1 1707024 R 390235 CDS YP_001748422.1 170720734 6110489 1708033..1709466 1 NC_010501.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1709466 6110489 PputW619_1548 Pseudomonas putida W619 isopropylmalate isomerase large subunit YP_001748422.1 1708033 D 390235 CDS YP_001748423.1 170720735 6110490 1709463..1710107 1 NC_010501.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1710107 leuD 6110490 leuD Pseudomonas putida W619 isopropylmalate isomerase small subunit YP_001748423.1 1709463 D 390235 CDS YP_001748424.1 170720736 6110491 1710257..1711021 1 NC_010501.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_2065 methlytransferase, UbiE/COQ5 family; type 11 methyltransferase 1711021 6110491 PputW619_1550 Pseudomonas putida W619 type 11 methyltransferase YP_001748424.1 1710257 D 390235 CDS YP_001748425.1 170720737 6110492 1711076..1712158 1 NC_010501.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1712158 6110492 PputW619_1551 Pseudomonas putida W619 3-isopropylmalate dehydrogenase YP_001748425.1 1711076 D 390235 CDS YP_001748426.1 170720738 6110493 1712222..1713334 1 NC_010501.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1713334 6110493 PputW619_1552 Pseudomonas putida W619 aspartate-semialdehyde dehydrogenase YP_001748426.1 1712222 D 390235 CDS YP_001748427.1 170720739 6110494 1713476..1714480 1 NC_010501.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1714480 6110494 PputW619_1553 Pseudomonas putida W619 aspartate-semialdehyde dehydrogenase YP_001748427.1 1713476 D 390235 CDS YP_001748428.1 170720740 6110495 1714551..1717241 1 NC_010501.1 PFAM: Peptidoglycan-binding LysM; KEGG: pen:PSEEN1688 hypothetical protein; peptidoglycan-binding LysM 1717241 6110495 PputW619_1554 Pseudomonas putida W619 peptidoglycan-binding LysM YP_001748428.1 1714551 D 390235 CDS YP_001748429.1 170720741 6110496 1717340..1718194 1 NC_010501.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1718194 truA 6110496 truA Pseudomonas putida W619 tRNA pseudouridine synthase A YP_001748429.1 1717340 D 390235 CDS YP_001748430.1 170720742 6110497 1718255..1718875 1 NC_010501.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1718875 6110497 PputW619_1556 Pseudomonas putida W619 N-(5'-phosphoribosyl)anthranilate isomerase YP_001748430.1 1718255 D 390235 CDS YP_001748431.1 170720743 6110498 1719099..1719992 1 NC_010501.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1719992 6110498 PputW619_1557 Pseudomonas putida W619 acetyl-CoA carboxylase subunit beta YP_001748431.1 1719099 D 390235 CDS YP_001748432.1 170720744 6110499 1719992..1721278 1 NC_010501.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: pen:PSEEN1692 folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1721278 6110499 PputW619_1558 Pseudomonas putida W619 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001748432.1 1719992 D 390235 CDS YP_001748433.1 170720745 6110500 1721283..1721948 1 NC_010501.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN1693 hypothetical protein; sporulation domain-containing protein 1721948 6110500 PputW619_1559 Pseudomonas putida W619 sporulation domain-containing protein YP_001748433.1 1721283 D 390235 CDS YP_001748434.1 170720746 6110501 1722066..1722623 1 NC_010501.1 PFAM: Colicin V production protein; KEGG: pen:PSEEN1694 bacteriocin production protein CvpA; colicin V production protein 1722623 6110501 PputW619_1560 Pseudomonas putida W619 colicin V production protein YP_001748434.1 1722066 D 390235 CDS YP_001748435.1 170720747 6110502 1722666..1724171 1 NC_010501.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1724171 6110502 PputW619_1561 Pseudomonas putida W619 amidophosphoribosyltransferase YP_001748435.1 1722666 D 390235 CDS YP_001748436.1 170720748 6110503 1724188..1725399 1 NC_010501.1 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1725399 6110503 PputW619_1562 Pseudomonas putida W619 O-succinylhomoserine sulfhydrylase YP_001748436.1 1724188 D 390235 CDS YP_001748437.1 170720749 6110504 1725396..1726169 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1697 oxidoreductase, short chain dehydrogenase/reductase family; oxidoreductase 1726169 6110504 PputW619_1563 Pseudomonas putida W619 oxidoreductase YP_001748437.1 1725396 D 390235 CDS YP_001748438.1 170720750 6110509 1727171..1728085 1 NC_010501.1 KEGG: pen:PSEEN1700 hypothetical protein; hypothetical protein 1728085 6110509 PputW619_1564 Pseudomonas putida W619 hypothetical protein YP_001748438.1 1727171 D 390235 CDS YP_001748439.1 170720751 6110510 complement(1728306..1729391) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1701 transcriptional regulator, AraC family; AraC family transcriptional regulator 1729391 6110510 PputW619_1565 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748439.1 1728306 R 390235 CDS YP_001748440.1 170720752 6110511 complement(1729396..1730514) 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1702 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1730514 6110511 PputW619_1566 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001748440.1 1729396 R 390235 CDS YP_001748441.1 170720753 6110512 complement(1730828..1732282) 1 NC_010501.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: pap:PSPA7_3433 cation transport protein; TrkH family potassium uptake protein 1732282 6110512 PputW619_1567 Pseudomonas putida W619 TrkH family potassium uptake protein YP_001748441.1 1730828 R 390235 CDS YP_001748442.1 170720754 6110513 1732530..1734566 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN1703 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1734566 6110513 PputW619_1568 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001748442.1 1732530 D 390235 CDS YP_001748443.1 170720755 6110514 1734638..1735537 1 NC_010501.1 KEGG: pen:PSEEN1704 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase 1735537 6110514 PputW619_1569 Pseudomonas putida W619 1-aminocyclopropane-1-carboxylate deaminase YP_001748443.1 1734638 D 390235 CDS YP_001748444.1 170720756 6110515 complement(1735528..1736073) 1 NC_010501.1 PFAM: cytochrome B561; KEGG: pen:PSEEN1705 cytochrome b(561); cytochrome B561 1736073 6110515 PputW619_1570 Pseudomonas putida W619 cytochrome B561 YP_001748444.1 1735528 R 390235 CDS YP_001748445.1 170720757 6110516 complement(1736244..1737182) 1 NC_010501.1 PFAM: Domain of unknown function DUF1853; KEGG: pen:PSEEN1707 hypothetical protein; hypothetical protein 1737182 6110516 PputW619_1571 Pseudomonas putida W619 hypothetical protein YP_001748445.1 1736244 R 390235 CDS YP_001748446.1 170720758 6110517 1737271..1738161 1 NC_010501.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1738161 ppnK 6110517 ppnK Pseudomonas putida W619 inorganic polyphosphate/ATP-NAD kinase YP_001748446.1 1737271 D 390235 CDS YP_001748447.1 170720759 6110518 1738161..1739132 1 NC_010501.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN1709 serine/threonine protein phosphatase; metallophosphoesterase 1739132 6110518 PputW619_1573 Pseudomonas putida W619 metallophosphoesterase YP_001748447.1 1738161 D 390235 CDS YP_001748448.1 170720760 6110519 1739129..1740007 1 NC_010501.1 PFAM: Rhomboid family protein; KEGG: pen:PSEEN1710 hypothetical protein; rhomboid family protein 1740007 6110519 PputW619_1574 Pseudomonas putida W619 rhomboid family protein YP_001748448.1 1739129 D 390235 CDS YP_001748449.1 170720761 6110520 1740021..1740281 1 NC_010501.1 PFAM: protein of unknown function DUF1315; KEGG: pen:PSEEN1711 hypothetical protein; hypothetical protein 1740281 6110520 PputW619_1575 Pseudomonas putida W619 hypothetical protein YP_001748449.1 1740021 D 390235 CDS YP_001748450.1 170720762 6110521 1740311..1741108 1 NC_010501.1 KEGG: pen:PSEEN1712 hypothetical protein; hypothetical protein 1741108 6110521 PputW619_1576 Pseudomonas putida W619 hypothetical protein YP_001748450.1 1740311 D 390235 CDS YP_001748451.1 170720763 6110522 1741122..1743779 1 NC_010501.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pen:PSEEN1713 aminopeptidase N; aminopeptidase N 1743779 pepN 6110522 pepN Pseudomonas putida W619 aminopeptidase N YP_001748451.1 1741122 D 390235 CDS YP_001748452.1 170720764 6110523 1744044..1745069 1 NC_010501.1 KEGG: pen:PSEEN1714 hypothetical protein; hypothetical protein 1745069 6110523 PputW619_1578 Pseudomonas putida W619 hypothetical protein YP_001748452.1 1744044 D 390235 CDS YP_001748453.1 170720765 6110524 1745066..1747465 1 NC_010501.1 KEGG: pen:PSEEN1715 hypothetical protein; hypothetical protein 1747465 6110524 PputW619_1579 Pseudomonas putida W619 hypothetical protein YP_001748453.1 1745066 D 390235 CDS YP_001748454.1 170720766 6110525 1747623..1747913 1 NC_010501.1 KEGG: pen:PSEEN1716 hypothetical protein; hypothetical protein 1747913 6110525 PputW619_1580 Pseudomonas putida W619 hypothetical protein YP_001748454.1 1747623 D 390235 CDS YP_001748455.1 170720767 6110526 1747879..1749009 1 NC_010501.1 KEGG: pen:PSEEN1717 hypothetical protein; 6-phosphogluconolactonase 1749009 6110526 PputW619_1581 Pseudomonas putida W619 6-phosphogluconolactonase YP_001748455.1 1747879 D 390235 CDS YP_001748456.1 170720768 6110527 1749133..1749312 1 NC_010501.1 KEGG: pen:PSEEN1719 hypothetical protein; hypothetical protein 1749312 6110527 PputW619_1582 Pseudomonas putida W619 hypothetical protein YP_001748456.1 1749133 D 390235 CDS YP_001748457.1 170720769 6110528 complement(1749346..1749939) 1 NC_010501.1 PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1720 glutathione S-transferase; glutathione S-transferase domain-containing protein 1749939 6110528 PputW619_1583 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001748457.1 1749346 R 390235 CDS YP_001748458.1 170720770 6110529 complement(1749936..1753580) 1 NC_010501.1 PFAM: SMC domain protein; KEGG: pen:PSEEN1721 exonuclease SbcC; SMC domain-containing protein 1753580 6110529 PputW619_1584 Pseudomonas putida W619 SMC domain-containing protein YP_001748458.1 1749936 R 390235 CDS YP_001748459.1 170720771 6110530 complement(1753577..1754815) 1 NC_010501.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: pen:PSEEN1722 exonuclease SbcD; nuclease SbcCD subunit D 1754815 6110530 PputW619_1585 Pseudomonas putida W619 nuclease SbcCD subunit D YP_001748459.1 1753577 R 390235 CDS YP_001748460.1 170720772 6110531 1755127..1755558 1 NC_010501.1 KEGG: pen:PSEEN1724 hypothetical protein; hypothetical protein 1755558 6110531 PputW619_1586 Pseudomonas putida W619 hypothetical protein YP_001748460.1 1755127 D 390235 CDS YP_001748461.1 170720773 6110532 complement(1755644..1757269) 1 NC_010501.1 KEGG: pen:PSEEN1725 hypothetical protein; hypothetical protein 1757269 6110532 PputW619_1587 Pseudomonas putida W619 hypothetical protein YP_001748461.1 1755644 R 390235 CDS YP_001748462.1 170720774 6110533 complement(1757266..1758984) 1 NC_010501.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN1726 hypothetical protein; hypothetical protein 1758984 6110533 PputW619_1588 Pseudomonas putida W619 hypothetical protein YP_001748462.1 1757266 R 390235 CDS YP_001748463.1 170720775 6110534 complement(1758981..1760057) 1 NC_010501.1 PFAM: von Willebrand factor type A; KEGG: pen:PSEEN1727 hypothetical protein; von Willebrand factor type A 1760057 6110534 PputW619_1589 Pseudomonas putida W619 von Willebrand factor type A YP_001748463.1 1758981 R 390235 CDS YP_001748464.1 170720776 6110535 complement(1760050..1760544) 1 NC_010501.1 KEGG: pen:PSEEN1728 hypothetical protein; hypothetical protein 1760544 6110535 PputW619_1590 Pseudomonas putida W619 hypothetical protein YP_001748464.1 1760050 R 390235 CDS YP_001748465.1 170720777 6110536 complement(1760558..1761502) 1 NC_010501.1 PFAM: protein of unknown function DUF58; KEGG: pen:PSEEN1729 hypothetical protein; hypothetical protein 1761502 6110536 PputW619_1591 Pseudomonas putida W619 hypothetical protein YP_001748465.1 1760558 R 390235 CDS YP_001748466.1 170720778 6110537 complement(1761507..1762466) 1 NC_010501.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pen:PSEEN1730 ATPase, MoxR-like protein; ATPase 1762466 6110537 PputW619_1592 Pseudomonas putida W619 ATPase YP_001748466.1 1761507 R 390235 CDS YP_001748467.1 170720779 6110538 1762686..1763993 1 NC_010501.1 KEGG: pap:PSPA7_3887 rhs element Vgr protein; rhs element Vgr protein 1763993 6110538 PputW619_1593 Pseudomonas putida W619 rhs element Vgr protein YP_001748467.1 1762686 D 390235 CDS YP_001748468.1 170720780 6110539 complement(1764042..1765370) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1735 MFS tranporter; major facilitator transporter 1765370 6110539 PputW619_1594 Pseudomonas putida W619 major facilitator transporter YP_001748468.1 1764042 R 390235 CDS YP_001748469.1 170720781 6110540 complement(1765415..1766608) 1 NC_010501.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 1766608 6110540 PputW619_1595 Pseudomonas putida W619 hydroxyglutarate oxidase YP_001748469.1 1765415 R 390235 CDS YP_001748470.1 170720782 6110541 complement(1766714..1767424) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1737 transcriptional regulator, GntR family; GntR family transcriptional regulator 1767424 6110541 PputW619_1596 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748470.1 1766714 R 390235 CDS YP_001748471.1 170720783 6110542 complement(1767592..1767945) 1 NC_010501.1 KEGG: pen:PSEEN1739 hypothetical protein; hypothetical protein 1767945 6110542 PputW619_1597 Pseudomonas putida W619 hypothetical protein YP_001748471.1 1767592 R 390235 CDS YP_001748472.1 170720784 6110543 1768195..1773060 1 NC_010501.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pen:PSEEN1740 NAD-specific glutamate dehydrogenase; arginine inducible; NAD-glutamate dehydrogenase 1773060 6110543 PputW619_1598 Pseudomonas putida W619 NAD-glutamate dehydrogenase YP_001748472.1 1768195 D 390235 CDS YP_001748473.1 170720785 6110544 complement(1773275..1774093) 1 NC_010501.1 PFAM: protein of unknown function DUF299; KEGG: pen:PSEEN1741 hypothetical protein; hypothetical protein 1774093 6110544 PputW619_1599 Pseudomonas putida W619 hypothetical protein YP_001748473.1 1773275 R 390235 CDS YP_001748474.1 170720786 6110545 1774269..1776644 1 NC_010501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1776644 6110545 PputW619_1600 Pseudomonas putida W619 phosphoenolpyruvate synthase YP_001748474.1 1774269 D 390235 CDS YP_001748475.1 170720787 6110546 1776710..1777738 1 NC_010501.1 KEGG: pen:PSEEN1743 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 1777738 6110546 PputW619_1601 Pseudomonas putida W619 alpha/beta fold family hydrolase YP_001748475.1 1776710 D 390235 CDS YP_001748476.1 170720788 6110547 1777878..1778369 1 NC_010501.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1778369 6110547 PputW619_1602 Pseudomonas putida W619 ribonuclease activity regulator protein RraA YP_001748476.1 1777878 D 390235 CDS YP_001748477.1 170720789 6110548 1778397..1779392 1 NC_010501.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1745 metal ion transporter CmaX protein; Mg2 transporter protein CorA family protein 1779392 6110548 PputW619_1603 Pseudomonas putida W619 Mg2 transporter protein CorA family protein YP_001748477.1 1778397 D 390235 CDS YP_001748478.1 170720790 6110549 1779505..1779768 1 NC_010501.1 KEGG: pen:PSEEN1747 hypothetical protein; hypothetical protein 1779768 6110549 PputW619_1604 Pseudomonas putida W619 hypothetical protein YP_001748478.1 1779505 D 390235 CDS YP_001748479.1 170720791 6110550 1779771..1780595 1 NC_010501.1 PFAM: Conserved TM helix repeat-containing protein; KEGG: pen:PSEEN1748 hypothetical protein; TM helix repeat-containing protein 1780595 6110550 PputW619_1605 Pseudomonas putida W619 TM helix repeat-containing protein YP_001748479.1 1779771 D 390235 CDS YP_001748480.1 170720792 6110551 1780709..1781275 1 NC_010501.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 1781275 6110551 PputW619_1606 Pseudomonas putida W619 RNA polymerase sigma factor SigX YP_001748480.1 1780709 D 390235 CDS YP_001748481.1 170720793 6110552 1781386..1782423 1 NC_010501.1 PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: pen:PSEEN1750 outer membrane protein OprF; OmpF family protein 1782423 6110552 PputW619_1607 Pseudomonas putida W619 OmpF family protein YP_001748481.1 1781386 D 390235 CDS YP_001748482.1 170720794 6110553 complement(1782522..1783262) 1 NC_010501.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 1783262 6110553 PputW619_1608 Pseudomonas putida W619 uroporphyrin-III C-methyltransferase YP_001748482.1 1782522 R 390235 CDS YP_001748483.1 170720795 6110554 complement(1783290..1784957) 1 NC_010501.1 SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: pen:PSEEN1751 bifunctional serine/threonine-protein kinase and phosphatase; protein serine/threonine phosphatase 1784957 6110554 PputW619_1609 Pseudomonas putida W619 protein serine/threonine phosphatase YP_001748483.1 1783290 R 390235 CDS YP_001748484.1 170720796 6110555 complement(1784967..1786178) 1 NC_010501.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1752 nitrate transporter; nitrite transporter 1786178 6110555 PputW619_1610 Pseudomonas putida W619 nitrite transporter YP_001748484.1 1784967 R 390235 CDS YP_001748485.1 170720797 6110556 complement(1786344..1786919) 1 NC_010501.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: pen:PSEEN1753 response regulator NasT; response regulator receiver/ANTAR domain-containing protein 1786919 6110556 PputW619_1611 Pseudomonas putida W619 response regulator receiver/ANTAR domain-containing protein YP_001748485.1 1786344 R 390235 CDS YP_001748486.1 170720798 6110557 complement(1786931..1788133) 1 NC_010501.1 KEGG: pen:PSEEN1754 nitrate-binding protein NasS; nitrate-binding protein NasS 1788133 6110557 PputW619_1612 Pseudomonas putida W619 nitrate-binding protein NasS YP_001748486.1 1786931 R 390235 CDS YP_001748487.1 170720799 6110558 1788261..1789286 1 NC_010501.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1789286 6110558 PputW619_1613 Pseudomonas putida W619 dihydroorotate dehydrogenase 2 YP_001748487.1 1788261 D 390235 CDS YP_001748488.1 170720800 6110559 complement(1789383..1789598) 1 NC_010501.1 PFAM: ribosome modulation factor; KEGG: pen:PSEEN1756 ribosome modulation factor; ribosome modulation factor 1789598 6110559 PputW619_1614 Pseudomonas putida W619 ribosome modulation factor YP_001748488.1 1789383 R 390235 CDS YP_001748489.1 170720801 6110560 1790161..1792353 1 NC_010501.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1792353 rlmL 6110560 rlmL Pseudomonas putida W619 23S rRNA m(2)G2445 methyltransferase YP_001748489.1 1790161 D 390235 CDS YP_001748490.1 170720802 6110561 1792448..1794838 1 NC_010501.1 KEGG: pen:PSEEN1758 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1794838 6110561 PputW619_1616 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase YP_001748490.1 1792448 D 390235 CDS YP_001748491.1 170720803 6110562 complement(1794902..1796365) 1 NC_010501.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pen:PSEEN3770 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 1796365 6110562 PputW619_1617 Pseudomonas putida W619 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001748491.1 1794902 R 390235 CDS YP_001748492.1 170720804 6110563 1796553..1796897 1 NC_010501.1 PFAM: protein of unknown function DUF469; KEGG: pen:PSEEN3769 hypothetical protein; hypothetical protein 1796897 6110563 PputW619_1618 Pseudomonas putida W619 hypothetical protein YP_001748492.1 1796553 D 390235 CDS YP_001748493.1 170720805 6110564 complement(1796934..1800539) 1 NC_010501.1 KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: extracellular solute-binding protein family 3; PAS/PAC sensor hybrid histidine kinase 1800539 6110564 PputW619_1619 Pseudomonas putida W619 PAS/PAC sensor hybrid histidine kinase YP_001748493.1 1796934 R 390235 CDS YP_001748494.1 170720806 6110565 complement(1800548..1801168) 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3767 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1801168 6110565 PputW619_1620 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001748494.1 1800548 R 390235 CDS YP_001748495.1 170720807 6110566 complement(1801447..1802778) 1 NC_010501.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1802778 6110566 PputW619_1621 Pseudomonas putida W619 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001748495.1 1801447 R 390235 CDS YP_001748496.1 170720808 6110567 complement(1802942..1803271) 1 NC_010501.1 KEGG: pen:PSEEN3765 hypothetical protein; hypothetical protein 1803271 6110567 PputW619_1622 Pseudomonas putida W619 hypothetical protein YP_001748496.1 1802942 R 390235 CDS YP_001748497.1 170720809 6110568 complement(1803268..1803642) 1 NC_010501.1 KEGG: pen:PSEEN3764 hypothetical protein; hypothetical protein 1803642 6110568 PputW619_1623 Pseudomonas putida W619 hypothetical protein YP_001748497.1 1803268 R 390235 CDS YP_001748498.1 170720810 6110569 complement(1803652..1803966) 1 NC_010501.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3763 hypothetical protein; hypothetical protein 1803966 6110569 PputW619_1624 Pseudomonas putida W619 hypothetical protein YP_001748498.1 1803652 R 390235 CDS YP_001748499.1 170720811 6110570 1804279..1805487 1 NC_010501.1 PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN3762 ammonium transporter; Rh family protein/ammonium transporter 1805487 6110570 PputW619_1625 Pseudomonas putida W619 Rh family protein/ammonium transporter YP_001748499.1 1804279 D 390235 CDS YP_001748500.1 170720812 6110571 1805563..1805802 1 NC_010501.1 PFAM: glutaredoxin 2; KEGG: pen:PSEEN3761 hypothetical protein; glutaredoxin 1805802 6110571 PputW619_1626 Pseudomonas putida W619 glutaredoxin YP_001748500.1 1805563 D 390235 CDS YP_001748501.1 170720813 6110572 1805907..1806338 1 NC_010501.1 PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein; peptidase M15A 1806338 6110572 PputW619_1627 Pseudomonas putida W619 peptidase M15A YP_001748501.1 1805907 D 390235 CDS YP_001748502.1 170720814 6110573 1806410..1806718 1 NC_010501.1 KEGG: pen:PSEEN3760 hypothetical protein; hypothetical protein 1806718 6110573 PputW619_1628 Pseudomonas putida W619 hypothetical protein YP_001748502.1 1806410 D 390235 CDS YP_001748503.1 170720815 6110574 1806770..1807654 1 NC_010501.1 PFAM: pseudouridine synthase; KEGG: pen:PSEEN3759 pseudouridylate synthase; pseudouridine synthase 1807654 6110574 PputW619_1629 Pseudomonas putida W619 pseudouridine synthase YP_001748503.1 1806770 D 390235 CDS YP_001748504.1 170720816 6110575 complement(1807695..1809260) 1 NC_010501.1 KEGG: pen:PSEEN3758 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 1809260 6110575 PputW619_1630 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001748504.1 1807695 R 390235 CDS YP_001748505.1 170720817 6110576 complement(1809521..1812262) 1 NC_010501.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1812262 acnA 6110576 acnA Pseudomonas putida W619 aconitate hydratase YP_001748505.1 1809521 R 390235 CDS YP_001748506.1 170720818 6110577 1812486..1813553 1 NC_010501.1 KEGG: pen:PSEEN3755 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 1813553 6110577 PputW619_1632 Pseudomonas putida W619 putative RNA 2'-O-ribose methyltransferase YP_001748506.1 1812486 D 390235 CDS YP_001748507.1 170720819 6110578 1814413..1814655 1 NC_010501.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1814655 6110578 PputW619_1633 Pseudomonas putida W619 sulfur transfer protein SirA YP_001748507.1 1814413 D 390235 CDS YP_001748508.1 170720820 6110579 1814716..1815858 1 NC_010501.1 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1815858 6110579 PputW619_1634 Pseudomonas putida W619 erythronate-4-phosphate dehydrogenase YP_001748508.1 1814716 D 390235 CDS YP_001748509.1 170720821 6110580 complement(1815928..1816101) 1 NC_010501.1 KEGG: pen:PSEEN3752 hypothetical protein; hypothetical protein 1816101 6110580 PputW619_1635 Pseudomonas putida W619 hypothetical protein YP_001748509.1 1815928 R 390235 CDS YP_001748510.1 170720822 6110581 1816362..1818068 1 NC_010501.1 KEGG: pen:PSEEN3751 ABC efflux transporter, permease/ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1818068 6110581 PputW619_1636 Pseudomonas putida W619 lipid ABC transporter ATPase/inner membrane protein YP_001748510.1 1816362 D 390235 CDS YP_001748511.1 170720823 6110582 1818259..1819875 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN3750 methyl-accepting chemotaxis histidine kinase; methyl-accepting chemotaxis sensory transducer 1819875 6110582 PputW619_1637 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001748511.1 1818259 D 390235 CDS YP_001748512.1 170720824 6110584 complement(1820088..1820309) 1 NC_010501.1 PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN3747 hypothetical protein; hypothetical protein 1820309 6110584 PputW619_1638 Pseudomonas putida W619 hypothetical protein YP_001748512.1 1820088 R 390235 CDS YP_001748513.1 170720825 6110585 1820487..1821026 1 NC_010501.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN3745 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1821026 6110585 PputW619_1639 Pseudomonas putida W619 molybdenum cofactor biosynthesis protein B YP_001748513.1 1820487 D 390235 CDS YP_001748514.1 170720826 6110586 1821019..1822236 1 NC_010501.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pen:PSEEN3744 molybdopterin biosynthesis protein, molybdenum incorporation step; molybdenum cofactor synthesis domain-containing protein 1822236 6110586 PputW619_1640 Pseudomonas putida W619 molybdenum cofactor synthesis domain-containing protein YP_001748514.1 1821019 D 390235 CDS YP_001748515.1 170720827 6110587 complement(1822225..1823472) 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN3743 glycosyl transferase; glycosyl transferase group 1 protein 1823472 6110587 PputW619_1641 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001748515.1 1822225 R 390235 CDS YP_001748516.1 170720828 6110588 1823931..1824812 1 NC_010501.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1824812 6110588 PputW619_1642 Pseudomonas putida W619 lipid kinase YP_001748516.1 1823931 D 390235 CDS YP_001748517.1 170720829 6110589 complement(1824796..1825455) 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3740 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 1825455 6110589 PputW619_1643 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001748517.1 1824796 R 390235 CDS YP_001748518.1 170720830 6110590 complement(1825452..1826342) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pen:PSEEN3739 sensor histidine kinase; histidine kinase 1826342 6110590 PputW619_1644 Pseudomonas putida W619 histidine kinase YP_001748518.1 1825452 R 390235 CDS YP_001748519.1 170720831 6110591 complement(1826720..1827241) 1 NC_010501.1 KEGG: pen:PSEEN3737 hypothetical protein; putative CheA signal transduction histidine kinase 1827241 6110591 PputW619_1645 Pseudomonas putida W619 putative CheA signal transduction histidine kinase YP_001748519.1 1826720 R 390235 CDS YP_001748520.1 170720832 6110592 1827588..1828523 1 NC_010501.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3735 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1828523 6110592 PputW619_1646 Pseudomonas putida W619 response regulator receiver modulated CheW protein YP_001748520.1 1827588 D 390235 CDS YP_001748521.1 170720833 6110593 1828579..1829382 1 NC_010501.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pen:PSEEN3734 hypothetical protein; MOSC domain-containing protein 1829382 6110593 PputW619_1647 Pseudomonas putida W619 MOSC domain-containing protein YP_001748521.1 1828579 D 390235 CDS YP_001748522.1 170720834 6110594 complement(1829436..1831364) 1 NC_010501.1 PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN3733 lytic murein transglycosylase, soluble; lytic transglycosylase 1831364 6110594 PputW619_1648 Pseudomonas putida W619 lytic transglycosylase YP_001748522.1 1829436 R 390235 CDS YP_001748523.1 170720835 6110595 1831586..1833514 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3732 ABC transporter, ATP-binding protein; ABC transporter-like protein 1833514 6110595 PputW619_1649 Pseudomonas putida W619 ABC transporter-like protein YP_001748523.1 1831586 D 390235 CDS YP_001748524.1 170720836 6110596 complement(1833603..1834043) 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pen:PSEEN3731 universal stress protein family; UspA domain-containing protein 1834043 6110596 PputW619_1650 Pseudomonas putida W619 UspA domain-containing protein YP_001748524.1 1833603 R 390235 CDS YP_001748525.1 170720837 6110597 1834152..1834589 1 NC_010501.1 KEGG: pen:PSEEN3730 hypothetical protein; hypothetical protein 1834589 6110597 PputW619_1651 Pseudomonas putida W619 hypothetical protein YP_001748525.1 1834152 D 390235 CDS YP_001748526.1 170720838 6110598 1835075..1837222 1 NC_010501.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1837222 fadB 6110598 fadB Pseudomonas putida W619 multifunctional fatty acid oxidation complex subunit alpha YP_001748526.1 1835075 D 390235 CDS YP_001748527.1 170720839 6110599 1837263..1838438 1 NC_010501.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1838438 fadA 6110599 fadA Pseudomonas putida W619 3-ketoacyl-CoA thiolase YP_001748527.1 1837263 D 390235 CDS YP_001748528.1 170720840 6110600 1838519..1838770 1 NC_010501.1 PFAM: protein of unknown function DUF1653; KEGG: pen:PSEEN3726 hypothetical protein; hypothetical protein 1838770 6110600 PputW619_1654 Pseudomonas putida W619 hypothetical protein YP_001748528.1 1838519 D 390235 CDS YP_001748529.1 170720841 6110601 1838871..1841480 1 NC_010501.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1841480 6110601 PputW619_1655 Pseudomonas putida W619 DNA topoisomerase I YP_001748529.1 1838871 D 390235 CDS YP_001748530.1 170720842 6110602 1841597..1842112 1 NC_010501.1 KEGG: pen:PSEEN3724 hypothetical protein; hypothetical protein 1842112 6110602 PputW619_1656 Pseudomonas putida W619 hypothetical protein YP_001748530.1 1841597 D 390235 CDS YP_001748531.1 170720843 6110603 1842163..1842396 1 NC_010501.1 KEGG: pen:PSEEN3723 hypothetical protein; hypothetical protein 1842396 6110603 PputW619_1657 Pseudomonas putida W619 hypothetical protein YP_001748531.1 1842163 D 390235 CDS YP_001748532.1 170720844 6110604 complement(1842435..1842911) 1 NC_010501.1 KEGG: pen:PSEEN3722 cell division inhibitor-related protein, SulA-like; cell division inhibitor-like protein, SulA-like protein 1842911 6110604 PputW619_1658 Pseudomonas putida W619 cell division inhibitor-like protein, SulA-like protein YP_001748532.1 1842435 R 390235 CDS YP_001748533.1 170720845 6110605 complement(1842925..1843533) 1 NC_010501.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1843533 6110605 PputW619_1659 Pseudomonas putida W619 LexA repressor YP_001748533.1 1842925 R 390235 CDS YP_001748534.1 170720846 6110606 1843755..1844462 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_1950 transcriptional regulator, TetR family; TetR family transcriptional regulator 1844462 6110606 PputW619_1660 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748534.1 1843755 D 390235 CDS YP_001748535.1 170720847 6110607 1844503..1845024 1 NC_010501.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN3719 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1845024 6110607 PputW619_1661 Pseudomonas putida W619 ErfK/YbiS/YcfS/YnhG family protein YP_001748535.1 1844503 D 390235 CDS YP_001748536.1 170720848 6110608 1845038..1846048 1 NC_010501.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1846048 6110608 PputW619_1662 Pseudomonas putida W619 beta-hexosaminidase YP_001748536.1 1845038 D 390235 CDS YP_001748537.1 170720849 6110609 complement(1846135..1849461) 1 NC_010501.1 KEGG: pen:PSEEN3717 helicase, SNF2/RAD54 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 1849461 6110609 PputW619_1663 Pseudomonas putida W619 non-specific serine/threonine protein kinase YP_001748537.1 1846135 R 390235 CDS YP_001748538.1 170720850 6110610 complement(1849463..1850035) 1 NC_010501.1 KEGG: pen:PSEEN3716 hypothetical protein; hypothetical protein 1850035 6110610 PputW619_1664 Pseudomonas putida W619 hypothetical protein YP_001748538.1 1849463 R 390235 CDS YP_001748539.1 170720851 6110611 complement(1850045..1853494) 1 NC_010501.1 KEGG: pen:PSEEN3715 transcription-repair coupling protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 1853494 6110611 PputW619_1665 Pseudomonas putida W619 transcription-repair coupling factor YP_001748539.1 1850045 R 390235 CDS YP_001748540.1 170720852 6110612 1853663..1855126 1 NC_010501.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1855126 6110612 PputW619_1666 Pseudomonas putida W619 glyceraldehyde-3-phosphate dehydrogenase YP_001748540.1 1853663 D 390235 CDS YP_001748541.1 170720853 6110613 1855350..1856348 1 NC_010501.1 PFAM: ApbE family lipoprotein; KEGG: pen:PSEEN3713 thiamine biosynthesis lipoprotein ApbE-like; ApbE family lipoprotein 1856348 6110613 PputW619_1667 Pseudomonas putida W619 ApbE family lipoprotein YP_001748541.1 1855350 D 390235 CDS YP_001748542.1 170720854 6110614 1856553..1857947 1 NC_010501.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1857947 6110614 PputW619_1668 Pseudomonas putida W619 soluble pyridine nucleotide transhydrogenase YP_001748542.1 1856553 D 390235 CDS YP_001748543.1 170720855 6110615 complement(1857996..1858712) 1 NC_010501.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN3710 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1858712 6110615 PputW619_1669 Pseudomonas putida W619 glycerophosphoryl diester phosphodiesterase YP_001748543.1 1857996 R 390235 CDS YP_001748544.1 170720856 6110616 complement(1858744..1859328) 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3709 hypothetical protein; type IV pilus assembly PilZ 1859328 6110616 PputW619_1670 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001748544.1 1858744 R 390235 CDS YP_001748545.1 170720857 6110617 1859422..1860672 1 NC_010501.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3708 lipoprotein releasing system transmembrane protein LolC; LolC/E family lipoprotein releasing system, transmembrane protein 1860672 6110617 PputW619_1671 Pseudomonas putida W619 LolC/E family lipoprotein releasing system, transmembrane protein YP_001748545.1 1859422 D 390235 CDS YP_001748546.1 170720858 6110618 1860665..1861363 1 NC_010501.1 KEGG: pen:PSEEN3707 lipoprotein releasing system, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1861363 6110618 PputW619_1672 Pseudomonas putida W619 lipoprotein releasing system, ATP-binding protein YP_001748546.1 1860665 D 390235 CDS YP_001748547.1 170720859 6110619 1861420..1862661 1 NC_010501.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3706 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 1862661 6110619 PputW619_1673 Pseudomonas putida W619 LolC/E family lipoprotein releasing system, transmembrane protein YP_001748547.1 1861420 D 390235 CDS YP_001748548.1 170720860 6110620 complement(1862776..1864113) 1 NC_010501.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3705 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 1864113 6110620 PputW619_1674 Pseudomonas putida W619 heavy metal sensor signal transduction histidine kinase YP_001748548.1 1862776 R 390235 CDS YP_001748549.1 170720861 6110621 complement(1864113..1864793) 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3704 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator 1864793 6110621 PputW619_1675 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001748549.1 1864113 R 390235 CDS YP_001748550.1 170720862 6110622 1864947..1865450 1 NC_010501.1 PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN3703 copper-binding protein; blue copper domain-containing protein 1865450 6110622 PputW619_1676 Pseudomonas putida W619 blue copper domain-containing protein YP_001748550.1 1864947 D 390235 CDS YP_001748551.1 170720863 6110623 1865519..1866349 1 NC_010501.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1866349 queF 6110623 queF Pseudomonas putida W619 7-cyano-7-deazaguanine reductase YP_001748551.1 1865519 D 390235 CDS YP_001748552.1 170720864 6110624 complement(1866475..1866738) 1 NC_010501.1 KEGG: pen:PSEEN3701 hypothetical protein; hypothetical protein 1866738 6110624 PputW619_1678 Pseudomonas putida W619 hypothetical protein YP_001748552.1 1866475 R 390235 CDS YP_001748553.1 170720865 6110625 complement(1866862..1867425) 1 NC_010501.1 KEGG: pen:PSEEN3700 hypothetical protein; hypothetical protein 1867425 6110625 PputW619_1679 Pseudomonas putida W619 hypothetical protein YP_001748553.1 1866862 R 390235 CDS YP_001748554.1 170720866 6110626 1867614..1868321 1 NC_010501.1 PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN3699 VacJ lipoprotein; VacJ family lipoprotein 1868321 6110626 PputW619_1680 Pseudomonas putida W619 VacJ family lipoprotein YP_001748554.1 1867614 D 390235 CDS YP_001748555.1 170720867 6110627 complement(1868373..1868672) 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3698 hypothetical protein; type IV pilus assembly PilZ 1868672 6110627 PputW619_1681 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001748555.1 1868373 R 390235 CDS YP_001748556.1 170720868 6110628 1868888..1870126 1 NC_010501.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3696 response regulator; response regulator receiver modulated serine phosphatase 1870126 6110628 PputW619_1682 Pseudomonas putida W619 response regulator receiver modulated serine phosphatase YP_001748556.1 1868888 D 390235 CDS YP_001748557.1 170720869 6110629 1870123..1870605 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3695 anti-anti-sigma factor; anti-sigma-factor antagonist 1870605 6110629 PputW619_1683 Pseudomonas putida W619 anti-sigma-factor antagonist YP_001748557.1 1870123 D 390235 CDS YP_001748558.1 170720870 6110630 complement(1870658..1872517) 1 NC_010501.1 KEGG: pen:PSEEN3694 hypothetical protein; hypothetical protein 1872517 6110630 PputW619_1684 Pseudomonas putida W619 hypothetical protein YP_001748558.1 1870658 R 390235 CDS YP_001748559.1 170720871 6110631 complement(1872661..1873587) 1 NC_010501.1 KEGG: pen:PSEEN3692 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 1873587 6110631 PputW619_1685 Pseudomonas putida W619 transaldolase B YP_001748559.1 1872661 R 390235 CDS YP_001748560.1 170720872 6110632 complement(1873820..1874785) 1 NC_010501.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN3691 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A 1874785 6110632 PputW619_1686 Pseudomonas putida W619 tRNA-dihydrouridine synthase A YP_001748560.1 1873820 R 390235 CDS YP_001748561.1 170720873 6110633 complement(1875587..1876513) 1 NC_010501.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pst:PSPTO_4277 esterase/lipase/thioesterase family protein; alpha/beta hydrolase domain-containing protein 1876513 6110633 PputW619_1687 Pseudomonas putida W619 alpha/beta hydrolase domain-containing protein YP_001748561.1 1875587 R 390235 CDS YP_001748562.1 170720874 6110634 1876635..1877573 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_4276 transcriptional regulator, LysR family; LysR family transcriptional regulator 1877573 6110634 PputW619_1688 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748562.1 1876635 D 390235 CDS YP_001748563.1 170720875 6110635 1878228..1878998 1 NC_010501.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1878998 fabG 6110635 fabG Pseudomonas putida W619 3-ketoacyl-ACP reductase YP_001748563.1 1878228 D 390235 CDS YP_001748564.1 170720876 6110636 1879062..1880165 1 NC_010501.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1880165 gldA 6110636 gldA Pseudomonas putida W619 glycerol dehydrogenase YP_001748564.1 1879062 D 390235 CDS YP_001748565.1 170720877 6110637 1880212..1881174 1 NC_010501.1 KEGG: rme:Rmet_4455 hypothetical protein; hypothetical protein 1881174 6110637 PputW619_1691 Pseudomonas putida W619 hypothetical protein YP_001748565.1 1880212 D 390235 CDS YP_001748566.1 170720878 6110638 1881334..1882365 1 NC_010501.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0764 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 1882365 6110638 PputW619_1692 Pseudomonas putida W619 LacI family transcriptional regulator YP_001748566.1 1881334 D 390235 CDS YP_001748567.1 170720879 6110639 complement(1882362..1883309) 1 NC_010501.1 KEGG: bpt:Bpet1181 hypothetical protein; hypothetical protein 1883309 6110639 PputW619_1693 Pseudomonas putida W619 hypothetical protein YP_001748567.1 1882362 R 390235 CDS YP_001748568.1 170720880 6110640 complement(1883306..1884310) 1 NC_010501.1 PFAM: luciferase family protein; KEGG: bpt:Bpet1180 putative monooxygenase; luciferase family protein 1884310 6110640 PputW619_1694 Pseudomonas putida W619 luciferase family protein YP_001748568.1 1883306 R 390235 CDS YP_001748569.1 170720881 6110641 1884726..1885199 1 NC_010501.1 KEGG: smd:Smed_2449 cupin 2 conserved barrel domain protein; cupin 1885199 6110641 PputW619_1695 Pseudomonas putida W619 cupin YP_001748569.1 1884726 D 390235 CDS YP_001748570.1 170720882 6110642 1885282..1886208 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL120168 putative LysR family transcriptional regulator; LysR family transcriptional regulator 1886208 6110642 PputW619_1696 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748570.1 1885282 D 390235 CDS YP_001748571.1 170720883 6110643 1886600..1887988 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: mta:Moth_1257 major facilitator superfamily MFS_1; major facilitator transporter 1887988 6110643 PputW619_1697 Pseudomonas putida W619 major facilitator transporter YP_001748571.1 1886600 D 390235 CDS YP_001748572.1 170720884 6110644 1888079..1889272 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 putative carboxylesterase protein; alpha/beta hydrolase fold family protein 1889272 6110644 PputW619_1698 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748572.1 1888079 D 390235 CDS YP_001748573.1 170720885 6110645 1889595..1890557 1 NC_010501.1 Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 1890557 6110645 PputW619_1699 Pseudomonas putida W619 3-hydroxyacyl-CoA dehydrogenase YP_001748573.1 1889595 D 390235 CDS YP_001748574.1 170720886 6110646 1890608..1891534 1 NC_010501.1 PFAM: protein of unknown function DUF849; KEGG: vei:Veis_4704 protein of unknown function DUF849; hypothetical protein 1891534 6110646 PputW619_1700 Pseudomonas putida W619 hypothetical protein YP_001748574.1 1890608 D 390235 CDS YP_001748575.1 170720887 6110647 1891645..1893015 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4257 major facilitator superfamily MFS_1; major facilitator transporter 1893015 6110647 PputW619_1701 Pseudomonas putida W619 major facilitator transporter YP_001748575.1 1891645 D 390235 CDS YP_001748576.1 170720888 6110648 1893012..1894538 1 NC_010501.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bxe:Bxe_A4448 altronate dehydratase; altronate dehydratase 1894538 6110648 PputW619_1702 Pseudomonas putida W619 altronate dehydratase YP_001748576.1 1893012 D 390235 CDS YP_001748577.1 170720889 6110649 complement(1894602..1895321) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dac:Daci_4254 transcriptional regulator, GntR family; GntR family transcriptional regulator 1895321 6110649 PputW619_1703 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748577.1 1894602 R 390235 CDS YP_001748578.1 170720890 6110650 complement(1895489..1896277) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2184 short chain dehydrogenase; short chain dehydrogenase 1896277 6110650 PputW619_1704 Pseudomonas putida W619 short chain dehydrogenase YP_001748578.1 1895489 R 390235 CDS YP_001748579.1 170720891 6110652 1897447..1897929 1 NC_010501.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 1897929 6110652 PputW619_1706 Pseudomonas putida W619 formate dehydrogenase subunit gamma YP_001748579.1 1897447 D 390235 CDS YP_001748580.1 170720892 6110653 1897923..1899482 1 NC_010501.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pen:PSEEN1827 formate dehydrogenase, beta subunit; NADH dehydrogenase 1899482 6110653 PputW619_1707 Pseudomonas putida W619 NADH dehydrogenase YP_001748580.1 1897923 D 390235 CDS YP_001748581.1 170720893 6110654 1899479..1902358 1 NC_010501.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1828 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 1902358 6110654 PputW619_1708 Pseudomonas putida W619 formate dehydrogenase subunit alpha YP_001748581.1 1899479 D 390235 CDS YP_001748582.1 170720894 6110655 1902355..1902558 1 NC_010501.1 KEGG: pen:PSEEN1829 formate dehydrogenase, delta subunit; formate dehydrogenase subunit delta 1902558 6110655 PputW619_1709 Pseudomonas putida W619 formate dehydrogenase subunit delta YP_001748582.1 1902355 D 390235 CDS YP_001748583.1 170720895 6110656 1902752..1904569 1 NC_010501.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1831 ABC efflux transporter, permease/ATP-binding protein; ABC transporter 1904569 6110656 PputW619_1710 Pseudomonas putida W619 ABC transporter YP_001748583.1 1902752 D 390235 CDS YP_001748584.1 170720896 6110657 complement(1904586..1905275) 1 NC_010501.1 PFAM: protein of unknown function DUF159; KEGG: psb:Psyr_2763 protein of unknown function DUF159; hypothetical protein 1905275 6110657 PputW619_1711 Pseudomonas putida W619 hypothetical protein YP_001748584.1 1904586 R 390235 CDS YP_001748585.1 170720897 6110658 complement(1905591..1906457) 1 NC_010501.1 PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B 1906457 6110658 PputW619_1712 Pseudomonas putida W619 copper resistance B YP_001748585.1 1905591 R 390235 CDS YP_001748586.1 170720898 6110659 complement(1906578..1908320) 1 NC_010501.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein 1908320 6110659 PputW619_1713 Pseudomonas putida W619 CopA family copper resistance protein YP_001748586.1 1906578 R 390235 CDS YP_001748587.1 170720899 6110660 1908618..1909613 1 NC_010501.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: psb:Psyr_1506 cation efflux protein; cation diffusion facilitator family transporter 1909613 6110660 PputW619_1714 Pseudomonas putida W619 cation diffusion facilitator family transporter YP_001748587.1 1908618 D 390235 CDS YP_001748588.1 170720900 6110661 complement(1909537..1910820) 1 NC_010501.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pfl:PFL_2185 arsenite efflux transporter; arsenical pump membrane protein 1910820 6110661 PputW619_1715 Pseudomonas putida W619 arsenical pump membrane protein YP_001748588.1 1909537 R 390235 CDS YP_001748589.1 170720901 6110662 1911061..1913301 1 NC_010501.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 1913301 6110662 PputW619_1716 Pseudomonas putida W619 outer membrane receptor FepA YP_001748589.1 1911061 D 390235 CDS YP_001748590.1 170720902 6110663 1913428..1913715 1 NC_010501.1 KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 1913715 6110663 PputW619_1717 Pseudomonas putida W619 putative iron uptake protein YP_001748590.1 1913428 D 390235 CDS YP_001748591.1 170720903 6110664 1913712..1915232 1 NC_010501.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 1915232 6110664 PputW619_1718 Pseudomonas putida W619 PepSY-associated TM helix domain-containing protein YP_001748591.1 1913712 D 390235 CDS YP_001748592.1 170720904 6110665 1915229..1915561 1 NC_010501.1 KEGG: bbr:BB3603 putative iron uptake protein; putative iron uptake protein 1915561 6110665 PputW619_1719 Pseudomonas putida W619 putative iron uptake protein YP_001748592.1 1915229 D 390235 CDS YP_001748593.1 170720905 6110666 complement(1915591..1916190) 1 NC_010501.1 PFAM: Haem oxygenase; KEGG: pen:PSEEN1837 heme oxygenase BphO; heme oxygenase 1916190 6110666 PputW619_1720 Pseudomonas putida W619 heme oxygenase YP_001748593.1 1915591 R 390235 CDS YP_001748594.1 170720906 6110667 1916332..1916871 1 NC_010501.1 PFAM: Phosphoglycerate mutase; KEGG: pfl:PFL_2248 phosphoglycerate mutase family protein; phosphoglycerate mutase 1916871 6110667 PputW619_1721 Pseudomonas putida W619 phosphoglycerate mutase YP_001748594.1 1916332 D 390235 CDS YP_001748595.1 170720907 6110668 complement(1916929..1917714) 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein 1917714 6110668 PputW619_1722 Pseudomonas putida W619 hypothetical protein YP_001748595.1 1916929 R 390235 CDS YP_001748596.1 170720908 6110669 complement(1917876..1919756) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1841 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 1919756 6110669 PputW619_1723 Pseudomonas putida W619 Cache sensor-containing methyl-accepting chemotaxis sensory transducer YP_001748596.1 1917876 R 390235 CDS YP_001748597.1 170720909 6110670 complement(1919897..1920775) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1842 transcriptional regulator, LysR family; LysR family transcriptional regulator 1920775 6110670 PputW619_1724 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748597.1 1919897 R 390235 CDS YP_001748598.1 170720910 6110671 1920877..1921305 1 NC_010501.1 PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN1843 hypothetical protein; transmembrane pair domain-containing protein 1921305 6110671 PputW619_1725 Pseudomonas putida W619 transmembrane pair domain-containing protein YP_001748598.1 1920877 D 390235 CDS YP_001748599.1 170720911 6110672 complement(1921320..1922381) 1 NC_010501.1 KEGG: pen:PSEEN1844 hypothetical protein; hypothetical protein 1922381 6110672 PputW619_1726 Pseudomonas putida W619 hypothetical protein YP_001748599.1 1921320 R 390235 CDS YP_001748600.1 170720912 6110673 complement(1922457..1923137) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1847 transcriptional regulator, GntR family; GntR family transcriptional regulator 1923137 6110673 PputW619_1727 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748600.1 1922457 R 390235 CDS YP_001748601.1 170720913 6110674 complement(1923154..1923858) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1848 transcriptional regulator, GntR family; GntR family transcriptional regulator 1923858 6110674 PputW619_1728 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748601.1 1923154 R 390235 CDS YP_001748602.1 170720914 6110675 complement(1923903..1925213) 1 NC_010501.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1925213 6110675 PputW619_1729 Pseudomonas putida W619 C4-dicarboxylate transporter DctA YP_001748602.1 1923903 R 390235 CDS YP_001748603.1 170720915 6110676 complement(1925501..1925986) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1854 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1925986 6110676 PputW619_1730 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001748603.1 1925501 R 390235 CDS YP_001748604.1 170720916 6110677 complement(1926091..1927155) 1 NC_010501.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1927155 6110677 PputW619_1731 Pseudomonas putida W619 ornithine cyclodeaminase YP_001748604.1 1926091 R 390235 CDS YP_001748605.1 170720917 6110678 complement(1927299..1929056) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psp:PSPPH_1680 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 1929056 6110678 PputW619_1732 Pseudomonas putida W619 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001748605.1 1927299 R 390235 CDS YP_001748606.1 170720918 6110679 1929280..1930374 1 NC_010501.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1681 ABC transporter, ATP-binding protein; ABC transporter-like protein 1930374 6110679 PputW619_1733 Pseudomonas putida W619 ABC transporter-like protein YP_001748606.1 1929280 D 390235 CDS YP_001748607.1 170720919 6110680 1930374..1931471 1 NC_010501.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1682 ABC transporter, ATP-binding protein; ABC transporter-like protein 1931471 6110680 PputW619_1734 Pseudomonas putida W619 ABC transporter-like protein YP_001748607.1 1930374 D 390235 CDS YP_001748608.1 170720920 6110681 1931468..1932331 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3633 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1932331 6110681 PputW619_1735 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748608.1 1931468 D 390235 CDS YP_001748609.1 170720921 6110682 1932335..1933135 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_1740 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1933135 6110682 PputW619_1736 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748609.1 1932335 D 390235 CDS YP_001748610.1 170720922 6110683 1933148..1933420 1 NC_010501.1 KEGG: pmy:Pmen_2046 small integral membrane protein-like protein; small integral membrane protein-like protein 1933420 6110683 PputW619_1737 Pseudomonas putida W619 small integral membrane protein-like protein YP_001748610.1 1933148 D 390235 CDS YP_001748611.1 170720923 6110684 1933459..1935198 1 NC_010501.1 KEGG: pfo:Pfl_3630 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1935198 6110684 PputW619_1738 Pseudomonas putida W619 extracellular solute-binding protein YP_001748611.1 1933459 D 390235 CDS YP_001748612.1 170720924 6110685 complement(1935298..1936152) 1 NC_010501.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1936152 6110685 PputW619_1739 Pseudomonas putida W619 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001748612.1 1935298 R 390235 CDS YP_001748613.1 170720925 6110690 1937097..1937396 1 NC_010501.1 KEGG: pen:PSEEN1866 hypothetical protein; hypothetical protein 1937396 6110690 PputW619_1740 Pseudomonas putida W619 hypothetical protein YP_001748613.1 1937097 D 390235 CDS YP_001748614.1 170720926 6110691 1937643..1938956 1 NC_010501.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1938956 tig 6110691 tig Pseudomonas putida W619 trigger factor YP_001748614.1 1937643 D 390235 CDS YP_001748615.1 170720927 6110692 1939048..1939689 1 NC_010501.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1939689 clpP 6110692 clpP Pseudomonas putida W619 ATP-dependent Clp protease proteolytic subunit YP_001748615.1 1939048 D 390235 CDS YP_001748616.1 170720928 6110693 1939798..1941081 1 NC_010501.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1941081 clpX 6110693 clpX Pseudomonas putida W619 ATP-dependent protease ATP-binding subunit ClpX YP_001748616.1 1939798 D 390235 CDS YP_001748617.1 170720929 6110694 1941238..1943634 1 NC_010501.1 KEGG: pen:PSEEN1870 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1943634 6110694 PputW619_1744 Pseudomonas putida W619 ATP-dependent protease La YP_001748617.1 1941238 D 390235 CDS YP_001748618.1 170720930 6110695 1943787..1944059 1 NC_010501.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN1871 DNA-binding protein HU-beta; histone family protein DNA-binding protein 1944059 6110695 PputW619_1745 Pseudomonas putida W619 histone family protein DNA-binding protein YP_001748618.1 1943787 D 390235 CDS YP_001748619.1 170720931 6110696 1944243..1946114 1 NC_010501.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN1872 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 1946114 6110696 PputW619_1746 Pseudomonas putida W619 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001748619.1 1944243 D 390235 CDS YP_001748620.1 170720932 6110697 complement(1946195..1947235) 1 NC_010501.1 PFAM: Patatin; KEGG: pen:PSEEN1873 patatin-like phospholipase; patatin 1947235 6110697 PputW619_1747 Pseudomonas putida W619 patatin YP_001748620.1 1946195 R 390235 CDS YP_001748621.1 170720933 6110698 1947389..1947667 1 NC_010501.1 KEGG: pen:PSEEN1874 lipoprotein; lipoprotein 1947667 6110698 PputW619_1748 Pseudomonas putida W619 lipoprotein YP_001748621.1 1947389 D 390235 CDS YP_001748622.1 170720934 6110699 1947682..1948461 1 NC_010501.1 PFAM: CHAD domain containing protein; KEGG: pen:PSEEN1875 hypothetical protein; CHAD domain-containing protein 1948461 6110699 PputW619_1749 Pseudomonas putida W619 CHAD domain-containing protein YP_001748622.1 1947682 D 390235 CDS YP_001748623.1 170720935 6110700 1948538..1949335 1 NC_010501.1 KEGG: pen:PSEEN1876 acyl-CoA thioesterase II; acyl-CoA thioesterase II 1949335 6110700 PputW619_1750 Pseudomonas putida W619 acyl-CoA thioesterase II YP_001748623.1 1948538 D 390235 CDS YP_001748624.1 170720936 6110701 complement(1949339..1949707) 1 NC_010501.1 KEGG: pen:PSEEN1877 hypothetical protein; hypothetical protein 1949707 6110701 PputW619_1751 Pseudomonas putida W619 hypothetical protein YP_001748624.1 1949339 R 390235 CDS YP_001748625.1 170720937 6110702 complement(1949783..1951261) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1878 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1951261 6110702 PputW619_1752 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001748625.1 1949783 R 390235 CDS YP_001748626.1 170720938 6110703 complement(1951377..1952174) 1 NC_010501.1 PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1879 deoxyribonuclease, TatD family; TatD-related deoxyribonuclease 1952174 6110703 PputW619_1753 Pseudomonas putida W619 TatD-related deoxyribonuclease YP_001748626.1 1951377 R 390235 CDS YP_001748627.1 170720939 6110704 1952333..1953739 1 NC_010501.1 PFAM: Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1880 lytic transglycosylase; lytic transglycosylase 1953739 6110704 PputW619_1754 Pseudomonas putida W619 lytic transglycosylase YP_001748627.1 1952333 D 390235 CDS YP_001748628.1 170720940 6110705 1953854..1954288 1 NC_010501.1 PFAM: DoxX family protein; KEGG: pen:PSEEN1881 hypothetical protein; DoxX family protein 1954288 6110705 PputW619_1755 Pseudomonas putida W619 DoxX family protein YP_001748628.1 1953854 D 390235 CDS YP_001748629.1 170720941 6110706 1954503..1954811 1 NC_010501.1 KEGG: pen:PSEEN1882 hypothetical protein; hypothetical protein 1954811 6110706 PputW619_1756 Pseudomonas putida W619 hypothetical protein YP_001748629.1 1954503 D 390235 CDS YP_001748630.1 170720942 6110707 1954823..1955296 1 NC_010501.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1955296 greB 6110707 greB Pseudomonas putida W619 transcription elongation factor GreB YP_001748630.1 1954823 D 390235 CDS YP_001748631.1 170720943 6110708 complement(1955354..1957861) 1 NC_010501.1 PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN1884 hypothetical protein; hypothetical protein 1957861 6110708 PputW619_1758 Pseudomonas putida W619 hypothetical protein YP_001748631.1 1955354 R 390235 CDS YP_001748632.1 170720944 6110709 complement(1957861..1958544) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1885 ABC transporter, ATP-binding protein; ABC transporter-like protein 1958544 6110709 PputW619_1759 Pseudomonas putida W619 ABC transporter-like protein YP_001748632.1 1957861 R 390235 CDS YP_001748633.1 170720945 6110710 1958555..1959160 1 NC_010501.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pen:PSEEN1886 arylesterase; arylesterase 1959160 6110710 PputW619_1760 Pseudomonas putida W619 arylesterase YP_001748633.1 1958555 D 390235 CDS YP_001748634.1 170720946 6110711 1959219..1959500 1 NC_010501.1 KEGG: pen:PSEEN1887 hypothetical protein; hypothetical protein 1959500 6110711 PputW619_1761 Pseudomonas putida W619 hypothetical protein YP_001748634.1 1959219 D 390235 CDS YP_001748635.1 170720947 6110712 1959632..1960609 1 NC_010501.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN1888 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1960609 6110712 PputW619_1762 Pseudomonas putida W619 ErfK/YbiS/YcfS/YnhG family protein YP_001748635.1 1959632 D 390235 CDS YP_001748636.1 170720948 6110713 complement(1960750..1961001) 1 NC_010501.1 KEGG: pen:PSEEN1889 outer membrane lipoprotein OprI; outer membrane lipoprotein OprI 1961001 6110713 PputW619_1763 Pseudomonas putida W619 outer membrane lipoprotein OprI YP_001748636.1 1960750 R 390235 CDS YP_001748637.1 170720949 6110714 1961518..1961799 1 NC_010501.1 KEGG: pen:PSEEN1890 hypothetical protein; hypothetical protein 1961799 6110714 PputW619_1764 Pseudomonas putida W619 hypothetical protein YP_001748637.1 1961518 D 390235 CDS YP_001748638.1 170720950 6110715 complement(1961863..1962939) 1 NC_010501.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1962939 6110715 PputW619_1765 Pseudomonas putida W619 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001748638.1 1961863 R 390235 CDS YP_001748639.1 170720951 6110716 1963173..1964120 1 NC_010501.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1964120 6110716 PputW619_1766 Pseudomonas putida W619 2-dehydropantoate 2-reductase YP_001748639.1 1963173 D 390235 CDS YP_001748640.1 170720952 6110717 1964225..1964722 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pen:PSEEN1894 hypothetical protein; UspA domain-containing protein 1964722 6110717 PputW619_1767 Pseudomonas putida W619 UspA domain-containing protein YP_001748640.1 1964225 D 390235 CDS YP_001748641.1 170720953 6110718 1964852..1965826 1 NC_010501.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1965826 cysB 6110718 cysB Pseudomonas putida W619 transcriptional regulator CysB YP_001748641.1 1964852 D 390235 CDS YP_001748642.1 170720954 6110719 complement(1965928..1966662) 1 NC_010501.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1966662 6110719 PputW619_1769 Pseudomonas putida W619 phosphoadenosine phosphosulfate reductase YP_001748642.1 1965928 R 390235 CDS YP_001748643.1 170720955 6110720 complement(1966782..1968125) 1 NC_010501.1 KEGG: pen:PSEEN1897 para-aminodeoxychorismate synthase subunit I PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; para-aminobenzoate synthase subunit I 1968125 6110720 PputW619_1770 Pseudomonas putida W619 para-aminobenzoate synthase subunit I YP_001748643.1 1966782 R 390235 CDS YP_001748644.1 170720956 6110721 complement(1968297..1969280) 1 NC_010501.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: pen:PSEEN1898 hypothetical protein; alpha-L-glutamate ligase-like protein 1969280 6110721 PputW619_1771 Pseudomonas putida W619 alpha-L-glutamate ligase-like protein YP_001748644.1 1968297 R 390235 CDS YP_001748645.1 170720957 6110722 complement(1969280..1970815) 1 NC_010501.1 KEGG: pen:PSEEN1899 hypothetical protein; hypothetical protein 1970815 6110722 PputW619_1772 Pseudomonas putida W619 hypothetical protein YP_001748645.1 1969280 R 390235 CDS YP_001748646.1 170720958 6110723 complement(1970821..1971357) 1 NC_010501.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN1900 hypothetical protein; hypothetical protein 1971357 6110723 PputW619_1773 Pseudomonas putida W619 hypothetical protein YP_001748646.1 1970821 R 390235 CDS YP_001748647.1 170720959 6110724 1971652..1972356 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1901 transcriptional regulator, GntR family; GntR family transcriptional regulator 1972356 6110724 PputW619_1774 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748647.1 1971652 D 390235 CDS YP_001748648.1 170720960 6110725 1972365..1973255 1 NC_010501.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1973255 prpB 6110725 prpB Pseudomonas putida W619 2-methylisocitrate lyase YP_001748648.1 1972365 D 390235 CDS YP_001748649.1 170720961 6110726 1973410..1974537 1 NC_010501.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1974537 6110726 PputW619_1776 Pseudomonas putida W619 methylcitrate synthase YP_001748649.1 1973410 D 390235 CDS YP_001748650.1 170720962 6110727 1974692..1977280 1 NC_010501.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1977280 6110727 PputW619_1777 Pseudomonas putida W619 aconitate hydratase YP_001748650.1 1974692 D 390235 CDS YP_001748651.1 170720963 6110728 1977420..1978610 1 NC_010501.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; AcnD-accessory protein PrpF 1978610 6110728 PputW619_1778 Pseudomonas putida W619 AcnD-accessory protein PrpF YP_001748651.1 1977420 D 390235 CDS YP_001748652.1 170720964 6110729 1978749..1980233 1 NC_010501.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 1980233 prpD 6110729 prpD Pseudomonas putida W619 2-methylcitrate dehydratase YP_001748652.1 1978749 D 390235 CDS YP_001748653.1 170720965 6110730 complement(1980299..1982923) 1 NC_010501.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1982923 6110730 PputW619_1780 Pseudomonas putida W619 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001748653.1 1980299 R 390235 CDS YP_001748654.1 170720966 6110731 1983314..1983781 1 NC_010501.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN1909 hypothetical protein; hypothetical protein 1983781 6110731 PputW619_1781 Pseudomonas putida W619 hypothetical protein YP_001748654.1 1983314 D 390235 CDS YP_001748655.1 170720967 6110732 1983849..1984610 1 NC_010501.1 hypothetical protein 1984610 6110732 PputW619_1782 Pseudomonas putida W619 hypothetical protein YP_001748655.1 1983849 D 390235 CDS YP_001748656.1 170720968 6110733 complement(1984637..1984993) 1 NC_010501.1 TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pen:PSEEN1910 6-pyruvoyl tetrahydrobiopterin synthase SscR; queuosine biosynthesis protein QueD 1984993 6110733 PputW619_1783 Pseudomonas putida W619 queuosine biosynthesis protein QueD YP_001748656.1 1984637 R 390235 CDS YP_001748657.1 170720969 6110734 complement(1985045..1986124) 1 NC_010501.1 KEGG: pen:PSEEN1911 hypothetical protein; hypothetical protein 1986124 6110734 PputW619_1784 Pseudomonas putida W619 hypothetical protein YP_001748657.1 1985045 R 390235 CDS YP_001748658.1 170720970 6110735 1986278..1986586 1 NC_010501.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1912 hypothetical protein; peptidase 1986586 6110735 PputW619_1785 Pseudomonas putida W619 peptidase YP_001748658.1 1986278 D 390235 CDS YP_001748659.1 170720971 6110736 1986586..1986900 1 NC_010501.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1913 hypothetical protein; peptidase 1986900 6110736 PputW619_1786 Pseudomonas putida W619 peptidase YP_001748659.1 1986586 D 390235 CDS YP_001748660.1 170720972 6110737 1986901..1987569 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1914 DNA-binding response regulator; two component transcriptional regulator 1987569 6110737 PputW619_1787 Pseudomonas putida W619 two component transcriptional regulator YP_001748660.1 1986901 D 390235 CDS YP_001748661.1 170720973 6110738 1987566..1988885 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN1915 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1988885 6110738 PputW619_1788 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001748661.1 1987566 D 390235 CDS YP_001748662.1 170720974 6110739 1989096..1990253 1 NC_010501.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: pen:PSEEN1916 hypothetical protein; hypothetical protein 1990253 6110739 PputW619_1789 Pseudomonas putida W619 hypothetical protein YP_001748662.1 1989096 D 390235 CDS YP_001748663.1 170720975 6110740 complement(1990227..1991093) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1917 transcriptional regulator, LysR family; LysR family transcriptional regulator 1991093 6110740 PputW619_1790 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748663.1 1990227 R 390235 CDS YP_001748664.1 170720976 6110741 1991274..1993163 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN1919 acetyl-CoA synthetase; AMP-dependent synthetase and ligase 1993163 6110741 PputW619_1791 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001748664.1 1991274 D 390235 CDS YP_001748665.1 170720977 6110742 complement(1993199..1994284) 1 NC_010501.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN1920 ATPase, AFG1 family; AFG1 family ATPase 1994284 6110742 PputW619_1792 Pseudomonas putida W619 AFG1 family ATPase YP_001748665.1 1993199 R 390235 CDS YP_001748666.1 170720978 6110743 complement(1994390..1994632) 1 NC_010501.1 KEGG: pfo:Pfl_3131 hypothetical protein; hypothetical protein 1994632 6110743 PputW619_1793 Pseudomonas putida W619 hypothetical protein YP_001748666.1 1994390 R 390235 CDS YP_001748667.1 170720979 6110745 complement(1995105..1997492) 1 NC_010501.1 KEGG: pen:PSEEN3403 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 1997492 6110745 PputW619_1794 Pseudomonas putida W619 multi-sensor hybrid histidine kinase YP_001748667.1 1995105 R 390235 CDS YP_001748668.1 170720980 6110746 complement(1997507..1997968) 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3402 response regulator; response regulator receiver protein 1997968 6110746 PputW619_1795 Pseudomonas putida W619 response regulator receiver protein YP_001748668.1 1997507 R 390235 CDS YP_001748669.1 170720981 6110747 complement(1997984..2000254) 1 NC_010501.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: pen:PSEEN3401 bacteriophytochrome 1; GAF sensor signal transduction histidine kinase 2000254 6110747 PputW619_1796 Pseudomonas putida W619 GAF sensor signal transduction histidine kinase YP_001748669.1 1997984 R 390235 CDS YP_001748670.1 170720982 6110748 2000520..2001047 1 NC_010501.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3400 type 1 pili protein CsuB; spore coat U domain-containing protein 2001047 6110748 PputW619_1797 Pseudomonas putida W619 spore coat U domain-containing protein YP_001748670.1 2000520 D 390235 CDS YP_001748671.1 170720983 6110749 2001077..2001613 1 NC_010501.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3399 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2001613 6110749 PputW619_1798 Pseudomonas putida W619 spore coat U domain-containing protein YP_001748671.1 2001077 D 390235 CDS YP_001748672.1 170720984 6110750 2001633..2002166 1 NC_010501.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3398 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2002166 6110750 PputW619_1799 Pseudomonas putida W619 spore coat U domain-containing protein YP_001748672.1 2001633 D 390235 CDS YP_001748673.1 170720985 6110751 2002176..2002679 1 NC_010501.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3397 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2002679 6110751 PputW619_1800 Pseudomonas putida W619 spore coat U domain-containing protein YP_001748673.1 2002176 D 390235 CDS YP_001748674.1 170720986 6110752 2002718..2003494 1 NC_010501.1 KEGG: pen:PSEEN3396 type 1 pili usher pathway chaperone CsuC; type 1 pili usher pathway chaperone CsuC 2003494 6110752 PputW619_1801 Pseudomonas putida W619 type 1 pili usher pathway chaperone CsuC YP_001748674.1 2002718 D 390235 CDS YP_001748675.1 170720987 6110753 2003555..2005900 1 NC_010501.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pen:PSEEN3395 type 1 pili usher protein CsuD; fimbrial biogenesis outer membrane usher protein 2005900 6110753 PputW619_1802 Pseudomonas putida W619 fimbrial biogenesis outer membrane usher protein YP_001748675.1 2003555 D 390235 CDS YP_001748676.1 170720988 6110754 2005897..2006868 1 NC_010501.1 PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3394 type 1 pili protein CsuE; spore coat U domain-containing protein 2006868 6110754 PputW619_1803 Pseudomonas putida W619 spore coat U domain-containing protein YP_001748676.1 2005897 D 390235 CDS YP_001748677.1 170720989 6110755 complement(2006928..2008076) 1 NC_010501.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: pen:PSEEN3393 zinc-dependent carboxypeptidase (M14 family); peptidase M14 carboxypeptidase A 2008076 6110755 PputW619_1804 Pseudomonas putida W619 peptidase M14 carboxypeptidase A YP_001748677.1 2006928 R 390235 CDS YP_001748678.1 170720990 6110756 2008405..2009580 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_5357 major facilitator superfamily MFS_1; major facilitator transporter 2009580 6110756 PputW619_1805 Pseudomonas putida W619 major facilitator transporter YP_001748678.1 2008405 D 390235 CDS YP_001748679.1 170720991 6110757 complement(2009624..2010139) 1 NC_010501.1 PFAM: Sigma-70 region 4 type 2; KEGG: pen:PSEEN3392 hypothetical protein; sigma-70 region 4 type 2 2010139 6110757 PputW619_1806 Pseudomonas putida W619 sigma-70 region 4 type 2 YP_001748679.1 2009624 R 390235 CDS YP_001748680.1 170720992 6110758 complement(2010575..2010886) 1 NC_010501.1 KEGG: pen:PSEEN3391 hypothetical protein; hypothetical protein 2010886 6110758 PputW619_1807 Pseudomonas putida W619 hypothetical protein YP_001748680.1 2010575 R 390235 CDS YP_001748681.1 170720993 6110759 2010975..2011682 1 NC_010501.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN3390 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2011682 6110759 PputW619_1808 Pseudomonas putida W619 XRE family transcriptional regulator YP_001748681.1 2010975 D 390235 CDS YP_001748682.1 170720994 6110760 complement(2011722..2013674) 1 NC_010501.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pen:PSEEN3389 methylcrotonoyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase L chain ATP-binding 2013674 6110760 PputW619_1809 Pseudomonas putida W619 carbamoyl-phosphate synthase L chain ATP-binding YP_001748682.1 2011722 R 390235 CDS YP_001748683.1 170720995 6110761 complement(2013671..2014486) 1 NC_010501.1 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 2014486 6110761 PputW619_1810 Pseudomonas putida W619 gamma-carboxygeranoyl-CoA hydratase YP_001748683.1 2013671 R 390235 CDS YP_001748684.1 170720996 6110762 complement(2014490..2016097) 1 NC_010501.1 PFAM: carboxyl transferase; KEGG: pen:PSEEN3387 3-methylcrotonyl-CoA carboxylase, beta subunit; propionyl-CoA carboxylase 2016097 6110762 PputW619_1811 Pseudomonas putida W619 propionyl-CoA carboxylase YP_001748684.1 2014490 R 390235 CDS YP_001748685.1 170720997 6110763 complement(2016117..2017280) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3386 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2017280 6110763 PputW619_1812 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001748685.1 2016117 R 390235 CDS YP_001748686.1 170720998 6110764 2017497..2019179 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3384 long-chain-fatty-acid-CoA ligase; AMP-binding domain-containing protein 2019179 6110764 PputW619_1813 Pseudomonas putida W619 AMP-binding domain-containing protein YP_001748686.1 2017497 D 390235 CDS YP_001748687.1 170720999 6110765 complement(2019263..2019424) 1 NC_010501.1 KEGG: pen:PSEEN2043 hypothetical protein; hypothetical protein 2019424 6110765 PputW619_1814 Pseudomonas putida W619 hypothetical protein YP_001748687.1 2019263 R 390235 CDS YP_001748688.1 170721000 6110766 2019564..2021582 1 NC_010501.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pen:PSEEN2044 glycosidase, alpha-amylase family protein; alpha amylase 2021582 6110766 PputW619_1815 Pseudomonas putida W619 alpha amylase YP_001748688.1 2019564 D 390235 CDS YP_001748689.1 170721001 6110767 2021625..2024942 1 NC_010501.1 KEGG: pen:PSEEN2045 trehalose synthase/glycosidase fusion protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 2024942 6110767 PputW619_1816 Pseudomonas putida W619 trehalose synthase YP_001748689.1 2021625 D 390235 CDS YP_001748690.1 170721002 6110768 2024943..2027153 1 NC_010501.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2027153 6110768 PputW619_1817 Pseudomonas putida W619 glycogen branching protein YP_001748690.1 2024943 D 390235 CDS YP_001748691.1 170721003 6110769 complement(2027210..2028286) 1 NC_010501.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN2047 outer membrane, autotransporter barrel domain protein; outer membrane autotransporter 2028286 6110769 PputW619_1818 Pseudomonas putida W619 outer membrane autotransporter YP_001748691.1 2027210 R 390235 CDS YP_001748692.1 170721004 6110770 complement(2028704..2030857) 1 NC_010501.1 KEGG: pen:PSEEN2049 glycosyl hydrolase GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 2030857 6110770 PputW619_1819 Pseudomonas putida W619 glycogen debranching protein GlgX YP_001748692.1 2028704 R 390235 CDS YP_001748693.1 170721005 6110771 complement(2031002..2031286) 1 NC_010501.1 KEGG: pen:PSEEN2050 hypothetical protein; hypothetical protein 2031286 6110771 PputW619_1820 Pseudomonas putida W619 hypothetical protein YP_001748693.1 2031002 R 390235 CDS YP_001748694.1 170721006 6110772 complement(2031301..2034075) 1 NC_010501.1 KEGG: pen:PSEEN2051 maltooligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; maltooligosyl trehalose synthase 2034075 6110772 PputW619_1821 Pseudomonas putida W619 maltooligosyl trehalose synthase YP_001748694.1 2031301 R 390235 CDS YP_001748695.1 170721007 6110773 complement(2034072..2036141) 1 NC_010501.1 KEGG: pen:PSEEN2052 4-alpha-glucanotransferase MalQ; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 2036141 6110773 PputW619_1822 Pseudomonas putida W619 4-alpha-glucanotransferase YP_001748695.1 2034072 R 390235 CDS YP_001748696.1 170721008 6110774 complement(2036138..2037880) 1 NC_010501.1 KEGG: pen:PSEEN2053 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 2037880 6110774 PputW619_1823 Pseudomonas putida W619 malto-oligosyltrehalose trehalohydrolase YP_001748696.1 2036138 R 390235 CDS YP_001748697.1 170721009 6110775 complement(2037895..2039454) 1 NC_010501.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2039454 glgA 6110775 glgA Pseudomonas putida W619 glycogen synthase YP_001748697.1 2037895 R 390235 CDS YP_001748698.1 170721010 6110776 complement(2039989..2040819) 1 NC_010501.1 PFAM: putative esterase; KEGG: bcy:Bcer98_2405 putative esterase; putative esterase 2040819 6110776 PputW619_1825 Pseudomonas putida W619 putative esterase YP_001748698.1 2039989 R 390235 CDS YP_001748699.1 170721011 6110777 complement(2040831..2043170) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_5189 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2043170 6110777 PputW619_1826 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001748699.1 2040831 R 390235 CDS YP_001748700.1 170721012 6110778 complement(2043223..2044152) 1 NC_010501.1 PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor; anti-FecI sigma factor FecR 2044152 6110778 PputW619_1827 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001748700.1 2043223 R 390235 CDS YP_001748701.1 170721013 6110779 complement(2044149..2044658) 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA2468 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 2044658 6110779 PputW619_1828 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001748701.1 2044149 R 390235 CDS YP_001748702.1 170721014 6110780 complement(2044785..2044952) 1 NC_010501.1 KEGG: pen:PSEEN1938 hypothetical protein; hypothetical protein 2044952 6110780 PputW619_1829 Pseudomonas putida W619 hypothetical protein YP_001748702.1 2044785 R 390235 CDS YP_001748703.1 170721015 6110781 2045156..2046139 1 NC_010501.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2046139 6110781 PputW619_1830 Pseudomonas putida W619 6-phosphogluconate dehydrogenase YP_001748703.1 2045156 D 390235 CDS YP_001748704.1 170721016 6110782 2046136..2047641 1 NC_010501.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2047641 6110782 PputW619_1831 Pseudomonas putida W619 glucose-6-phosphate 1-dehydrogenase YP_001748704.1 2046136 D 390235 CDS YP_001748705.1 170721017 6110784 2049604..2050224 1 NC_010501.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN3246 transcriptional regulator, TetR family; TetR family transcriptional regulator 2050224 6110784 PputW619_1833 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748705.1 2049604 D 390235 CDS YP_001748706.1 170721018 6110785 complement(2050303..2051577) 1 NC_010501.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2051577 6110785 PputW619_1834 Pseudomonas putida W619 dihydropyrimidine dehydrogenase YP_001748706.1 2050303 R 390235 CDS YP_001748707.1 170721019 6110786 complement(2051578..2052945) 1 NC_010501.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2052945 6110786 PputW619_1835 Pseudomonas putida W619 putative oxidoreductase YP_001748707.1 2051578 R 390235 CDS YP_001748708.1 170721020 6110787 complement(2053107..2054546) 1 NC_010501.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2054546 6110787 PputW619_1836 Pseudomonas putida W619 phenylhydantoinase YP_001748708.1 2053107 R 390235 CDS YP_001748709.1 170721021 6110788 2055163..2056665 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3254 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease 2056665 6110788 PputW619_1837 Pseudomonas putida W619 cytosine/purines uracil thiamine allantoin permease YP_001748709.1 2055163 D 390235 CDS YP_001748710.1 170721022 6110789 2056679..2057962 1 NC_010501.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2057962 6110789 PputW619_1838 Pseudomonas putida W619 allantoate amidohydrolase YP_001748710.1 2056679 D 390235 CDS YP_001748711.1 170721023 6110790 complement(2058036..2059001) 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN2683 ribonuclease Z; ribonuclease Z 2059001 6110790 PputW619_1839 Pseudomonas putida W619 ribonuclease Z YP_001748711.1 2058036 R 390235 CDS YP_001748712.1 170721024 6110791 complement(2059064..2059630) 1 NC_010501.1 PFAM: Lipocalin family protein; KEGG: pmy:Pmen_0511 lipocalin family protein; lipocalin family protein 2059630 6110791 PputW619_1840 Pseudomonas putida W619 lipocalin family protein YP_001748712.1 2059064 R 390235 CDS YP_001748713.1 170721025 6110792 2059837..2060649 1 NC_010501.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2060649 6110792 PputW619_1841 Pseudomonas putida W619 enoyl-CoA hydratase YP_001748713.1 2059837 D 390235 CDS YP_001748714.1 170721026 6110793 2060683..2061513 1 NC_010501.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2061513 nudC 6110793 nudC Pseudomonas putida W619 NADH pyrophosphatase YP_001748714.1 2060683 D 390235 CDS YP_001748715.1 170721027 6110794 complement(2061481..2062260) 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2185 hypothetical protein; hypothetical protein 2062260 6110794 PputW619_1843 Pseudomonas putida W619 hypothetical protein YP_001748715.1 2061481 R 390235 CDS YP_001748716.1 170721028 6110795 complement(2062464..2063294) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pap:PSPA7_3995 chloroperoxidase precursor; alpha/beta hydrolase fold family protein 2063294 6110795 PputW619_1844 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748716.1 2062464 R 390235 CDS YP_001748717.1 170721029 6110796 complement(2063393..2064748) 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2186 glutamine synthetase; glutamine synthetase 2064748 6110796 PputW619_1845 Pseudomonas putida W619 glutamine synthetase YP_001748717.1 2063393 R 390235 CDS YP_001748718.1 170721030 6110797 complement(2064758..2065309) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2187 transcriptional regulator; XRE family transcriptional regulator 2065309 6110797 PputW619_1846 Pseudomonas putida W619 XRE family transcriptional regulator YP_001748718.1 2064758 R 390235 CDS YP_001748719.1 170721031 6110798 complement(2065302..2066591) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2188 oxidoreductase with FAD/NAD(P)-binding domain; FAD dependent oxidoreductase 2066591 6110798 PputW619_1847 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001748719.1 2065302 R 390235 CDS YP_001748720.1 170721032 6110799 2066727..2067614 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2190 transcriptional regulator, Lys R family; LysR family transcriptional regulator 2067614 6110799 PputW619_1848 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748720.1 2066727 D 390235 CDS YP_001748721.1 170721033 6110800 2067708..2068817 1 NC_010501.1 KEGG: pen:PSEEN2191 porphyromonas-type peptidyl-arginine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; agmatine deiminase 2068817 6110800 PputW619_1849 Pseudomonas putida W619 agmatine deiminase YP_001748721.1 2067708 D 390235 CDS YP_001748722.1 170721034 6110801 2068817..2069917 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2192 periplasmic polyamine-binding protein; extracellular solute-binding protein 2069917 6110801 PputW619_1850 Pseudomonas putida W619 extracellular solute-binding protein YP_001748722.1 2068817 D 390235 CDS YP_001748723.1 170721035 6110802 complement(2069968..2070966) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pst:PSPTO_3264 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2070966 6110802 PputW619_1851 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748723.1 2069968 R 390235 CDS YP_001748724.1 170721036 6110803 complement(2071042..2071479) 1 NC_010501.1 KEGG: pen:PSEEN3504 hypothetical protein; hypothetical protein 2071479 6110803 PputW619_1852 Pseudomonas putida W619 hypothetical protein YP_001748724.1 2071042 R 390235 CDS YP_001748725.1 170721037 6110804 complement(2071479..2071907) 1 NC_010501.1 PFAM: protein of unknown function DUF411; KEGG: pen:PSEEN3503 hypothetical protein; hypothetical protein 2071907 6110804 PputW619_1853 Pseudomonas putida W619 hypothetical protein YP_001748725.1 2071479 R 390235 CDS YP_001748726.1 170721038 6110805 complement(2072024..2073385) 1 NC_010501.1 PFAM: peptidase U32; KEGG: pen:PSEEN3499 protease, U32 family; peptidase U32 2073385 6110805 PputW619_1854 Pseudomonas putida W619 peptidase U32 YP_001748726.1 2072024 R 390235 CDS YP_001748727.1 170721039 6110806 2073515..2074579 1 NC_010501.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3498 hypothetical protein; hypothetical protein 2074579 6110806 PputW619_1855 Pseudomonas putida W619 hypothetical protein YP_001748727.1 2073515 D 390235 CDS YP_001748728.1 170721040 6110807 complement(2074608..2076674) 1 NC_010501.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3497 TonB-dependent siderophore receptor; TonB-dependent receptor 2076674 6110807 PputW619_1856 Pseudomonas putida W619 TonB-dependent receptor YP_001748728.1 2074608 R 390235 CDS YP_001748729.1 170721041 6110808 2076905..2077153 1 NC_010501.1 PFAM: regulatory protein LuxR; KEGG: aav:Aave_3810 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2077153 6110808 PputW619_1857 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001748729.1 2076905 D 390235 CDS YP_001748730.1 170721042 6110809 2077161..2077523 1 NC_010501.1 KEGG: bte:BTH_II1345 hypothetical protein; hypothetical protein 2077523 6110809 PputW619_1858 Pseudomonas putida W619 hypothetical protein YP_001748730.1 2077161 D 390235 CDS YP_001748731.1 170721043 6110810 complement(2077520..2077906) 1 NC_010501.1 PFAM: CI repressor; KEGG: tdn:Tmden_0804 hypothetical protein; CI repressor 2077906 6110810 PputW619_1859 Pseudomonas putida W619 CI repressor YP_001748731.1 2077520 R 390235 CDS YP_001748732.1 170721044 6110811 2078108..2078383 1 NC_010501.1 PFAM: transcriptional activator Ogr/delta; KEGG: csa:Csal_1361 hypothetical protein; transcriptional activator Ogr/delta 2078383 6110811 PputW619_1860 Pseudomonas putida W619 transcriptional activator Ogr/delta YP_001748732.1 2078108 D 390235 CDS YP_001748733.1 170721045 6110812 complement(2078458..2079927) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2079927 6110812 PputW619_1861 Pseudomonas putida W619 NADH dehydrogenase subunit N YP_001748733.1 2078458 R 390235 CDS YP_001748734.1 170721046 6110813 complement(2079935..2081467) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2081467 6110813 PputW619_1862 Pseudomonas putida W619 NADH dehydrogenase subunit M YP_001748734.1 2079935 R 390235 CDS YP_001748735.1 170721047 6110814 complement(2081508..2083361) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2083361 6110814 PputW619_1863 Pseudomonas putida W619 NADH dehydrogenase subunit L YP_001748735.1 2081508 R 390235 CDS YP_001748736.1 170721048 6110815 complement(2083358..2083666) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2083666 6110815 PputW619_1864 Pseudomonas putida W619 NADH dehydrogenase subunit K YP_001748736.1 2083358 R 390235 CDS YP_001748737.1 170721049 6110816 complement(2083670..2084170) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2084170 6110816 PputW619_1865 Pseudomonas putida W619 NADH dehydrogenase subunit J YP_001748737.1 2083670 R 390235 CDS YP_001748738.1 170721050 6110817 complement(2084181..2084729) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2084729 6110817 PputW619_1866 Pseudomonas putida W619 NADH dehydrogenase subunit I YP_001748738.1 2084181 R 390235 CDS YP_001748739.1 170721051 6110818 complement(2084741..2085748) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2085748 6110818 PputW619_1867 Pseudomonas putida W619 NADH dehydrogenase subunit H YP_001748739.1 2084741 R 390235 CDS YP_001748740.1 170721052 6110819 complement(2085745..2088459) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2088459 6110819 PputW619_1868 Pseudomonas putida W619 NADH dehydrogenase subunit G YP_001748740.1 2085745 R 390235 CDS YP_001748741.1 170721053 6110820 complement(2088592..2089968) 1 NC_010501.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F 2089968 6110820 PputW619_1869 Pseudomonas putida W619 NADH dehydrogenase subunit I F YP_001748741.1 2088592 R 390235 CDS YP_001748742.1 170721054 6110821 complement(2089965..2090462) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2090462 6110821 PputW619_1870 Pseudomonas putida W619 NADH dehydrogenase subunit E YP_001748742.1 2089965 R 390235 CDS YP_001748743.1 170721055 6110822 complement(2090465..2092246) 1 NC_010501.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2092246 6110822 PputW619_1871 Pseudomonas putida W619 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001748743.1 2090465 R 390235 CDS YP_001748744.1 170721056 6110823 complement(2092326..2093003) 1 NC_010501.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2093003 6110823 PputW619_1872 Pseudomonas putida W619 NADH dehydrogenase subunit B YP_001748744.1 2092326 R 390235 CDS YP_001748745.1 170721057 6110824 complement(2093014..2093427) 1 NC_010501.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2093427 6110824 PputW619_1873 Pseudomonas putida W619 NADH dehydrogenase subunit A YP_001748745.1 2093014 R 390235 CDS YP_001748746.1 170721058 6110825 2094085..2095110 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3442 transcriptional regulator, AraC family; AraC family transcriptional regulator 2095110 6110825 PputW619_1874 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748746.1 2094085 D 390235 CDS YP_001748747.1 170721059 6110826 complement(2095168..2096277) 1 NC_010501.1 KEGG: csa:Csal_2941 hypothetical protein; hypothetical protein 2096277 6110826 PputW619_1875 Pseudomonas putida W619 hypothetical protein YP_001748747.1 2095168 R 390235 CDS YP_001748748.1 170721060 6110827 2096523..2098289 1 NC_010501.1 KEGG: pae:PA1242 hypothetical protein; hypothetical protein 2098289 6110827 PputW619_1876 Pseudomonas putida W619 hypothetical protein YP_001748748.1 2096523 D 390235 CDS YP_001748749.1 170721061 6110828 complement(2098346..2100259) 1 NC_010501.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN3441 protein-tyrosine phosphatase; autotransporter; protein tyrosine/serine phosphatase 2100259 6110828 PputW619_1877 Pseudomonas putida W619 protein tyrosine/serine phosphatase YP_001748749.1 2098346 R 390235 CDS YP_001748750.1 170721062 6110829 complement(2100432..2100896) 1 NC_010501.1 PFAM: protein of unknown function DUF1348; KEGG: sit:TM1040_2246 protein of unknown function DUF1348; hypothetical protein 2100896 6110829 PputW619_1878 Pseudomonas putida W619 hypothetical protein YP_001748750.1 2100432 R 390235 CDS YP_001748751.1 170721063 6110830 complement(2101020..2102201) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3412 transporter, MFS superfamily; major facilitator transporter 2102201 6110830 PputW619_1879 Pseudomonas putida W619 major facilitator transporter YP_001748751.1 2101020 R 390235 CDS YP_001748752.1 170721064 6110831 complement(2102277..2103080) 1 NC_010501.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 2103080 dkgB 6110831 dkgB Pseudomonas putida W619 2,5-diketo-D-gluconate reductase B YP_001748752.1 2102277 R 390235 CDS YP_001748753.1 170721065 6110832 complement(2103279..2104856) 1 NC_010501.1 KEGG: pen:PSEEN3409 hypothetical protein; hypothetical protein 2104856 6110832 PputW619_1881 Pseudomonas putida W619 hypothetical protein YP_001748753.1 2103279 R 390235 CDS YP_001748754.1 170721066 6110833 2105008..2110242 1 NC_010501.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 2110242 6110833 PputW619_1882 Pseudomonas putida W619 hypothetical protein YP_001748754.1 2105008 D 390235 CDS YP_001748755.1 170721067 6110834 complement(2110314..2110808) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN3408 hypothetical protein; hypothetical protein 2110808 6110834 PputW619_1883 Pseudomonas putida W619 hypothetical protein YP_001748755.1 2110314 R 390235 CDS YP_001748756.1 170721068 6110835 complement(2110792..2112444) 1 NC_010501.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN3407 ferredoxin-nitrite reductase; sulfite reductase (ferredoxin) 2112444 6110835 PputW619_1884 Pseudomonas putida W619 sulfite reductase (ferredoxin) YP_001748756.1 2110792 R 390235 CDS YP_001748757.1 170721069 6110836 2112660..2113736 1 NC_010501.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 2113736 6110836 PputW619_1885 Pseudomonas putida W619 periplasmic binding protein/LacI transcriptional regulator YP_001748757.1 2112660 D 390235 CDS YP_001748758.1 170721070 6110837 2113822..2113935 1 NC_010501.1 KEGG: pen:PSEEN3404 hypothetical protein; hypothetical protein 2113935 6110837 PputW619_1886 Pseudomonas putida W619 hypothetical protein YP_001748758.1 2113822 D 390235 CDS YP_001748759.1 170721071 6110838 complement(2114003..2114221) 1 NC_010501.1 KEGG: pen:PSEEN2042 hypothetical protein; hypothetical protein 2114221 6110838 PputW619_1887 Pseudomonas putida W619 hypothetical protein YP_001748759.1 2114003 R 390235 CDS YP_001748760.1 170721072 6110839 complement(2114299..2118006) 1 NC_010501.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2118006 metH 6110839 metH Pseudomonas putida W619 B12-dependent methionine synthase YP_001748760.1 2114299 R 390235 CDS YP_001748761.1 170721073 6110840 2118176..2120476 1 NC_010501.1 PFAM: fatty acid cistrans isomerase; KEGG: pen:PSEEN3381 esterified fatty acid cis/trans isomerase; fatty acid cistrans isomerase 2120476 6110840 PputW619_1889 Pseudomonas putida W619 fatty acid cistrans isomerase YP_001748761.1 2118176 D 390235 CDS YP_001748762.1 170721074 6110841 2120589..2121623 1 NC_010501.1 PFAM: acyltransferase 3; KEGG: pen:PSEEN3380 acetyltransferase Act; acyltransferase 3 2121623 6110841 PputW619_1890 Pseudomonas putida W619 acyltransferase 3 YP_001748762.1 2120589 D 390235 CDS YP_001748763.1 170721075 6110842 2121682..2122266 1 NC_010501.1 TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: pen:PSEEN3379 hypothetical protein; IscR-regulated protein YhgI 2122266 6110842 PputW619_1891 Pseudomonas putida W619 IscR-regulated protein YhgI YP_001748763.1 2121682 D 390235 CDS YP_001748764.1 170721076 6110843 2122480..2123088 1 NC_010501.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN3378 hypothetical protein; electron transport protein SCO1/SenC 2123088 6110843 PputW619_1892 Pseudomonas putida W619 electron transport protein SCO1/SenC YP_001748764.1 2122480 D 390235 CDS YP_001748765.1 170721077 6110844 2123088..2123576 1 NC_010501.1 PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN3377 hypothetical protein; hypothetical protein 2123576 6110844 PputW619_1893 Pseudomonas putida W619 hypothetical protein YP_001748765.1 2123088 D 390235 CDS YP_001748766.1 170721078 6110845 complement(2123610..2123837) 1 NC_010501.1 KEGG: pen:PSEEN3376 hypothetical protein; hypothetical protein 2123837 6110845 PputW619_1894 Pseudomonas putida W619 hypothetical protein YP_001748766.1 2123610 R 390235 CDS YP_001748767.1 170721079 6110846 complement(2123878..2124711) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3375 transcriptional regulator, AraC family; AraC family transcriptional regulator 2124711 6110846 PputW619_1895 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748767.1 2123878 R 390235 CDS YP_001748768.1 170721080 6110847 complement(2124708..2125022) 1 NC_010501.1 PFAM: branched-chain amino acid transport; KEGG: pen:PSEEN3374 hypothetical protein; branched-chain amino acid transport 2125022 6110847 PputW619_1896 Pseudomonas putida W619 branched-chain amino acid transport YP_001748768.1 2124708 R 390235 CDS YP_001748769.1 170721081 6110848 complement(2125019..2125720) 1 NC_010501.1 PFAM: AzlC family protein; KEGG: pen:PSEEN3373 branched-chain amino acid transport protein, AzlC; AzlC family protein 2125720 6110848 PputW619_1897 Pseudomonas putida W619 AzlC family protein YP_001748769.1 2125019 R 390235 CDS YP_001748770.1 170721082 6110849 complement(2125817..2126512) 1 NC_010501.1 KEGG: pen:PSEEN3372 hypothetical protein; hypothetical protein 2126512 6110849 PputW619_1898 Pseudomonas putida W619 hypothetical protein YP_001748770.1 2125817 R 390235 CDS YP_001748771.1 170721083 6110850 complement(2126669..2127763) 1 NC_010501.1 KEGG: pen:PSEEN3371 hypothetical protein; hypothetical protein 2127763 6110850 PputW619_1899 Pseudomonas putida W619 hypothetical protein YP_001748771.1 2126669 R 390235 CDS YP_001748772.1 170721084 6110851 complement(2127806..2128432) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3370 transporter, LysE family; lysine exporter protein LysE/YggA 2128432 6110851 PputW619_1900 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001748772.1 2127806 R 390235 CDS YP_001748773.1 170721085 6110852 complement(2128435..2129217) 1 NC_010501.1 PFAM: Protein of unknown function YqcI/YcgG; KEGG: pen:PSEEN3369 hypothetical protein; hypothetical protein 2129217 6110852 PputW619_1901 Pseudomonas putida W619 hypothetical protein YP_001748773.1 2128435 R 390235 CDS YP_001748774.1 170721086 6110853 2129378..2130298 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3368 transcriptional regulator, LysR family; LysR family transcriptional regulator 2130298 6110853 PputW619_1902 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748774.1 2129378 D 390235 CDS YP_001748775.1 170721087 6110854 2130372..2132732 1 NC_010501.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2132732 6110854 PputW619_1903 Pseudomonas putida W619 DNA polymerase II YP_001748775.1 2130372 D 390235 CDS YP_001748776.1 170721088 6110855 2132812..2137308 1 NC_010501.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein 2137308 6110855 PputW619_1904 Pseudomonas putida W619 hypothetical protein YP_001748776.1 2132812 D 390235 CDS YP_001748777.1 170721089 6110856 2137537..2138088 1 NC_010501.1 KEGG: pen:PSEEN3357 hypothetical protein; hypothetical protein 2138088 6110856 PputW619_1905 Pseudomonas putida W619 hypothetical protein YP_001748777.1 2137537 D 390235 CDS YP_001748778.1 170721090 6110857 complement(2138217..2138705) 1 NC_010501.1 PFAM: DoxX family protein; KEGG: pen:PSEEN3339 hypothetical protein; DoxX family protein 2138705 6110857 PputW619_1906 Pseudomonas putida W619 DoxX family protein YP_001748778.1 2138217 R 390235 CDS YP_001748779.1 170721091 6110858 complement(2138720..2139337) 1 NC_010501.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: pen:PSEEN3338 hypothetical protein; ferric reductase domain-containing protein 2139337 6110858 PputW619_1907 Pseudomonas putida W619 ferric reductase domain-containing protein YP_001748779.1 2138720 R 390235 CDS YP_001748780.1 170721092 6110859 complement(2139499..2140785) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2402 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2140785 6110859 PputW619_1908 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001748780.1 2139499 R 390235 CDS YP_001748781.1 170721093 6110860 complement(2140782..2141522) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2403 two-component response regulator; two component transcriptional regulator 2141522 6110860 PputW619_1909 Pseudomonas putida W619 two component transcriptional regulator YP_001748781.1 2140782 R 390235 CDS YP_001748782.1 170721094 6110861 2141722..2142015 1 NC_010501.1 KEGG: pen:PSEEN2405 hypothetical protein; hypothetical protein 2142015 6110861 PputW619_1910 Pseudomonas putida W619 hypothetical protein YP_001748782.1 2141722 D 390235 CDS YP_001748783.1 170721095 6110862 2141987..2142541 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2406 thioredoxin; redoxin domain-containing protein 2142541 6110862 PputW619_1911 Pseudomonas putida W619 redoxin domain-containing protein YP_001748783.1 2141987 D 390235 CDS YP_001748784.1 170721096 6110863 complement(2142592..2143440) 1 NC_010501.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2143440 6110863 PputW619_1912 Pseudomonas putida W619 shikimate 5-dehydrogenase YP_001748784.1 2142592 R 390235 CDS YP_001748785.1 170721097 6110864 complement(2143437..2143895) 1 NC_010501.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2143895 6110864 PputW619_1913 Pseudomonas putida W619 3-dehydroquinate dehydratase YP_001748785.1 2143437 R 390235 CDS YP_001748786.1 170721098 6110865 complement(2144072..2145409) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3801 major facilitator family transporter; major facilitator transporter 2145409 6110865 PputW619_1914 Pseudomonas putida W619 major facilitator transporter YP_001748786.1 2144072 R 390235 CDS YP_001748787.1 170721099 6110866 complement(2145603..2146286) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_0307 GntR domain protein; GntR family transcriptional regulator 2146286 6110866 PputW619_1915 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748787.1 2145603 R 390235 CDS YP_001748788.1 170721100 6110867 2146565..2147350 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; KEGG: pmy:Pmen_0306 extracellular solute-binding protein, family 3; extracellular solute-binding protein 2147350 6110867 PputW619_1916 Pseudomonas putida W619 extracellular solute-binding protein YP_001748788.1 2146565 D 390235 CDS YP_001748789.1 170721101 6110868 2147373..2148038 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0305 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2148038 6110868 PputW619_1917 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001748789.1 2147373 D 390235 CDS YP_001748790.1 170721102 6110869 2148039..2148686 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_5461 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2148686 6110869 PputW619_1918 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001748790.1 2148039 D 390235 CDS YP_001748791.1 170721103 6110870 2148673..2149407 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_0295 ABC transporter; ABC transporter-like protein 2149407 6110870 PputW619_1919 Pseudomonas putida W619 ABC transporter-like protein YP_001748791.1 2148673 D 390235 CDS YP_001748792.1 170721104 6110871 complement(2149429..2150205) 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase 2150205 6110871 PputW619_1920 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001748792.1 2149429 R 390235 CDS YP_001748793.1 170721105 6110872 complement(2150330..2150674) 1 NC_010501.1 KEGG: aba:Acid345_0296 hypothetical protein; hypothetical protein 2150674 6110872 PputW619_1921 Pseudomonas putida W619 hypothetical protein YP_001748793.1 2150330 R 390235 CDS YP_001748794.1 170721106 6110873 complement(2150759..2152342) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3185 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2152342 6110873 PputW619_1922 Pseudomonas putida W619 diguanylate cyclase YP_001748794.1 2150759 R 390235 CDS YP_001748795.1 170721107 6110874 complement(2152429..2152908) 1 NC_010501.1 KEGG: pen:PSEEN3184 hypothetical protein; hypothetical protein 2152908 6110874 PputW619_1923 Pseudomonas putida W619 hypothetical protein YP_001748795.1 2152429 R 390235 CDS YP_001748796.1 170721108 6110875 2153026..2153526 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: psp:PSPPH_3010 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2153526 6110875 PputW619_1924 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001748796.1 2153026 D 390235 CDS YP_001748797.1 170721109 6110876 complement(2153613..2154950) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family; outer membrane porin 2154950 6110876 PputW619_1925 Pseudomonas putida W619 outer membrane porin YP_001748797.1 2153613 R 390235 CDS YP_001748798.1 170721110 6110877 complement(2154947..2155381) 1 NC_010501.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: rru:Rru_A1139 blue (type 1) copper subtype; pseudoazurin 2155381 6110877 PputW619_1926 Pseudomonas putida W619 pseudoazurin YP_001748798.1 2154947 R 390235 CDS YP_001748799.1 170721111 6110878 complement(2155398..2156186) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_3096 ABC transporter; ABC transporter-like protein 2156186 6110878 PputW619_1927 Pseudomonas putida W619 ABC transporter-like protein YP_001748799.1 2155398 R 390235 CDS YP_001748800.1 170721112 6110879 complement(2156183..2157190) 1 NC_010501.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: psp:PSPPH_3007 iron ABC transporter, permease protein, putative; transport system permease 2157190 6110879 PputW619_1928 Pseudomonas putida W619 transport system permease YP_001748800.1 2156183 R 390235 CDS YP_001748801.1 170721113 6110880 complement(2157199..2158209) 1 NC_010501.1 PFAM: periplasmic binding protein; KEGG: psb:Psyr_3094 periplasmic binding protein; periplasmic binding protein 2158209 6110880 PputW619_1929 Pseudomonas putida W619 periplasmic binding protein YP_001748801.1 2157199 R 390235 CDS YP_001748802.1 170721114 6110881 complement(2158547..2159713) 1 NC_010501.1 PFAM: protein of unknown function DUF1624; KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein 2159713 6110881 PputW619_1930 Pseudomonas putida W619 hypothetical protein YP_001748802.1 2158547 R 390235 CDS YP_001748803.1 170721115 6110882 complement(2159827..2161998) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2012 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 2161998 6110882 PputW619_1931 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001748803.1 2159827 R 390235 CDS YP_001748804.1 170721116 6110883 complement(2162319..2163467) 1 NC_010501.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3041 polyamine ABC transporter, ATP binding protein; ABC transporter-like protein 2163467 6110883 PputW619_1932 Pseudomonas putida W619 ABC transporter-like protein YP_001748804.1 2162319 R 390235 CDS YP_001748805.1 170721117 6110884 complement(2163487..2164296) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3040 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2164296 6110884 PputW619_1933 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748805.1 2163487 R 390235 CDS YP_001748806.1 170721118 6110885 complement(2164303..2165220) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3039 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2165220 6110885 PputW619_1934 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748806.1 2164303 R 390235 CDS YP_001748807.1 170721119 6110886 complement(2165217..2166242) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3038 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 2166242 6110886 PputW619_1935 Pseudomonas putida W619 extracellular solute-binding protein YP_001748807.1 2165217 R 390235 CDS YP_001748808.1 170721120 6110887 complement(2166532..2167647) 1 NC_010501.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2167647 6110887 PputW619_1936 Pseudomonas putida W619 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001748808.1 2166532 R 390235 CDS YP_001748809.1 170721121 6110888 2167726..2168019 1 NC_010501.1 PFAM: protein of unknown function DUF1330; KEGG: pen:PSEEN3036 hypothetical protein; hypothetical protein 2168019 6110888 PputW619_1937 Pseudomonas putida W619 hypothetical protein YP_001748809.1 2167726 D 390235 CDS YP_001748810.1 170721122 6110889 2168120..2168866 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2990 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2168866 6110889 PputW619_1938 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001748810.1 2168120 D 390235 CDS YP_001748811.1 170721123 6110890 complement(2168877..2170952) 1 NC_010501.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase 2170952 6110890 PputW619_1939 Pseudomonas putida W619 PAS/PAC sensor hybrid histidine kinase YP_001748811.1 2168877 R 390235 CDS YP_001748812.1 170721124 6110891 complement(2171055..2172464) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2988 transcriptional regulator, GntR family; transcriptional regulator 2172464 6110891 PputW619_1940 Pseudomonas putida W619 transcriptional regulator YP_001748812.1 2171055 R 390235 CDS YP_001748813.1 170721125 6110892 complement(2172588..2172827) 1 NC_010501.1 KEGG: pfl:PFL_2870 hypothetical protein; hypothetical protein 2172827 6110892 PputW619_1941 Pseudomonas putida W619 hypothetical protein YP_001748813.1 2172588 R 390235 CDS YP_001748814.1 170721126 6110893 2173019..2173537 1 NC_010501.1 PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN2986 transporter, MgtC family; MgtC/SapB transporter 2173537 6110893 PputW619_1942 Pseudomonas putida W619 MgtC/SapB transporter YP_001748814.1 2173019 D 390235 CDS YP_001748815.1 170721127 6110894 complement(2174069..2174968) 1 NC_010501.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 2174968 6110894 PputW619_1943 Pseudomonas putida W619 hydroxymethylglutaryl-CoA lyase YP_001748815.1 2174069 R 390235 CDS YP_001748816.1 170721128 6110895 complement(2174989..2175387) 1 NC_010501.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN2982 transcriptional regulator, MerR family; MerR family transcriptional regulator 2175387 6110895 PputW619_1944 Pseudomonas putida W619 MerR family transcriptional regulator YP_001748816.1 2174989 R 390235 CDS YP_001748817.1 170721129 6110896 complement(2175498..2176376) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3049 transcriptional regulator PobR; AraC family transcriptional regulator 2176376 6110896 PputW619_1945 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748817.1 2175498 R 390235 CDS YP_001748818.1 170721130 6110897 2176507..2177694 1 NC_010501.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2177694 6110897 PputW619_1946 Pseudomonas putida W619 4-hydroxybenzoate 3-monooxygenase YP_001748818.1 2176507 D 390235 CDS YP_001748819.1 170721131 6110898 complement(2177826..2178005) 1 NC_010501.1 KEGG: pen:PSEEN2162 hypothetical protein; hypothetical protein 2178005 6110898 PputW619_1947 Pseudomonas putida W619 hypothetical protein YP_001748819.1 2177826 R 390235 CDS YP_001748820.1 170721132 6110899 2178102..2178905 1 NC_010501.1 KEGG: pen:PSEEN2163 hypothetical protein; hypothetical protein 2178905 6110899 PputW619_1948 Pseudomonas putida W619 hypothetical protein YP_001748820.1 2178102 D 390235 CDS YP_001748821.1 170721133 6110900 complement(2178966..2180249) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2164 FAD-dependant oxidoreductase; FAD dependent oxidoreductase 2180249 6110900 PputW619_1949 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001748821.1 2178966 R 390235 CDS YP_001748822.1 170721134 6110903 2180852..2181490 1 NC_010501.1 PFAM: Sporulation domain protein; KEGG: pen:PSEEN2166 hypothetical protein; sporulation domain-containing protein 2181490 6110903 PputW619_1950 Pseudomonas putida W619 sporulation domain-containing protein YP_001748822.1 2180852 D 390235 CDS YP_001748823.1 170721135 6110904 2181669..2182094 1 NC_010501.1 KEGG: pen:PSEEN1948 hypothetical protein; hypothetical protein 2182094 6110904 PputW619_1951 Pseudomonas putida W619 hypothetical protein YP_001748823.1 2181669 D 390235 CDS YP_001748824.1 170721136 6110905 complement(2182115..2182552) 1 NC_010501.1 KEGG: pde:Pden_1337 hypothetical protein; hypothetical protein 2182552 6110905 PputW619_1952 Pseudomonas putida W619 hypothetical protein YP_001748824.1 2182115 R 390235 CDS YP_001748825.1 170721137 6110906 2182652..2183083 1 NC_010501.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pfl:PFL_6174 RNA polymerase-binding protein DksA, putative; TraR/DksA family transcriptional regulator 2183083 6110906 PputW619_1953 Pseudomonas putida W619 TraR/DksA family transcriptional regulator YP_001748825.1 2182652 D 390235 CDS YP_001748826.1 170721138 6110907 complement(2183136..2183378) 1 NC_010501.1 PFAM: protein of unknown function DUF1654; KEGG: pen:PSEEN1950 hypothetical protein; hypothetical protein 2183378 6110907 PputW619_1954 Pseudomonas putida W619 hypothetical protein YP_001748826.1 2183136 R 390235 CDS YP_001748827.1 170721139 6110908 complement(2183545..2184633) 1 NC_010501.1 KEGG: pen:PSEEN1951 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; type II L-asparaginase 2184633 6110908 PputW619_1955 Pseudomonas putida W619 type II L-asparaginase YP_001748827.1 2183545 R 390235 CDS YP_001748828.1 170721140 6110909 2184975..2185931 1 NC_010501.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1952 ribose ABC transporter, periplasmic ribose-binding protein RbsB; monosaccharide-transporting ATPase 2185931 6110909 PputW619_1956 Pseudomonas putida W619 monosaccharide-transporting ATPase YP_001748828.1 2184975 D 390235 CDS YP_001748829.1 170721141 6110910 2185950..2187503 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1953 ribose ABC transporter, ATP-binding protein RbsA; ABC transporter-like protein 2187503 6110910 PputW619_1957 Pseudomonas putida W619 ABC transporter-like protein YP_001748829.1 2185950 D 390235 CDS YP_001748830.1 170721142 6110911 2187500..2188495 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN1954 ribose ABC transporter, permease protein RbsC; monosaccharide-transporting ATPase 2188495 6110911 PputW619_1958 Pseudomonas putida W619 monosaccharide-transporting ATPase YP_001748830.1 2187500 D 390235 CDS YP_001748831.1 170721143 6110912 2188500..2189522 1 NC_010501.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1955 ribose operon repressor RbsR; LacI family transcriptional regulator 2189522 6110912 PputW619_1959 Pseudomonas putida W619 LacI family transcriptional regulator YP_001748831.1 2188500 D 390235 CDS YP_001748832.1 170721144 6110913 2189532..2190440 1 NC_010501.1 TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: pen:PSEEN1956 ribokinase RbsK; ribokinase 2190440 6110913 PputW619_1960 Pseudomonas putida W619 ribokinase YP_001748832.1 2189532 D 390235 CDS YP_001748833.1 170721145 6110914 2190437..2190835 1 NC_010501.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2190835 6110914 PputW619_1961 Pseudomonas putida W619 D-ribose pyranase YP_001748833.1 2190437 D 390235 CDS YP_001748834.1 170721146 6110915 2190926..2191933 1 NC_010501.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pen:PSEEN1958 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 2191933 6110915 PputW619_1962 Pseudomonas putida W619 inosine/uridine-preferring nucleoside hydrolase YP_001748834.1 2190926 D 390235 CDS YP_001748835.1 170721147 6110916 complement(2191905..2192117) 1 NC_010501.1 KEGG: pen:PSEEN1959 hypothetical protein; hypothetical protein 2192117 6110916 PputW619_1963 Pseudomonas putida W619 hypothetical protein YP_001748835.1 2191905 R 390235 CDS YP_001748836.1 170721148 6110917 2192403..2192723 1 NC_010501.1 KEGG: pen:PSEEN1960 hypothetical protein; hypothetical protein 2192723 6110917 PputW619_1964 Pseudomonas putida W619 hypothetical protein YP_001748836.1 2192403 D 390235 CDS YP_001748837.1 170721149 6110918 complement(2192900..2193112) 1 NC_010501.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1961 cold shock protein CapA; cold-shock DNA-binding domain-containing protein 2193112 6110918 PputW619_1965 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001748837.1 2192900 R 390235 CDS YP_001748838.1 170721150 6110919 complement(2193272..2193574) 1 NC_010501.1 KEGG: pen:PSEEN1962 hypothetical protein; hypothetical protein 2193574 6110919 PputW619_1966 Pseudomonas putida W619 hypothetical protein YP_001748838.1 2193272 R 390235 CDS YP_001748839.1 170721151 6110920 2193910..2195832 1 NC_010501.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2195832 thrS 6110920 thrS Pseudomonas putida W619 threonyl-tRNA synthetase YP_001748839.1 2193910 D 390235 CDS YP_001748840.1 170721152 6110921 2195832..2196383 1 NC_010501.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2196383 infC 6110921 infC Pseudomonas putida W619 translation initiation factor IF-3 YP_001748840.1 2195832 D 390235 CDS YP_001748841.1 170721153 6110922 2196444..2196638 1 NC_010501.1 PFAM: ribosomal protein L35; KEGG: pen:PSEEN1965 50S ribosomal subunit protein A; 50S ribosomal protein L35 2196638 rpmI 6110922 rpmI Pseudomonas putida W619 50S ribosomal protein L35 YP_001748841.1 2196444 D 390235 CDS YP_001748842.1 170721154 6110923 2196667..2197023 1 NC_010501.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2197023 rplT 6110923 rplT Pseudomonas putida W619 50S ribosomal protein L20 YP_001748842.1 2196667 D 390235 CDS YP_001748843.1 170721155 6110924 2197134..2198150 1 NC_010501.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2198150 pheS 6110924 pheS Pseudomonas putida W619 phenylalanyl-tRNA synthetase subunit alpha YP_001748843.1 2197134 D 390235 CDS YP_001748844.1 170721156 6110925 2198182..2200563 1 NC_010501.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2200563 pheT 6110925 pheT Pseudomonas putida W619 phenylalanyl-tRNA synthetase subunit beta YP_001748844.1 2198182 D 390235 CDS YP_001748845.1 170721157 6110926 2200568..2200870 1 NC_010501.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2200870 ihfA 6110926 ihfA Pseudomonas putida W619 integration host factor subunit alpha YP_001748845.1 2200568 D 390235 CDS YP_001748846.1 170721158 6110927 2200851..2201207 1 NC_010501.1 PFAM: regulatory protein MerR; KEGG: pen:PSEEN1970 transcriptional regulator, MerR family; MerR family transcriptional regulator 2201207 6110927 PputW619_1974 Pseudomonas putida W619 MerR family transcriptional regulator YP_001748846.1 2200851 D 390235 CDS YP_001748847.1 170721159 6110929 complement(2201601..2201921) 1 NC_010501.1 PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: pfo:Pfl_3015 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein 2201921 6110929 PputW619_1975 Pseudomonas putida W619 hypothetical protein YP_001748847.1 2201601 R 390235 CDS YP_001748848.1 170721160 6110931 complement(2203784..2204605) 1 NC_010501.1 activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional activator MhpR 2204605 6110931 PputW619_1978 Pseudomonas putida W619 DNA-binding transcriptional activator MhpR YP_001748848.1 2203784 R 390235 CDS YP_001748849.1 170721161 6110932 2204932..2206599 1 NC_010501.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 2206599 mhpA 6110932 mhpA Pseudomonas putida W619 3-(3-hydroxyphenyl)propionate hydroxylase YP_001748849.1 2204932 D 390235 CDS YP_001748850.1 170721162 6110933 2206601..2207545 1 NC_010501.1 catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 2207545 mhpB 6110933 mhpB Pseudomonas putida W619 3-(2,3-dihydroxyphenyl)propionate dioxygenase YP_001748850.1 2206601 D 390235 CDS YP_001748851.1 170721163 6110934 2207565..2208428 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_0911 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2208428 6110934 PputW619_1981 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748851.1 2207565 D 390235 CDS YP_001748852.1 170721164 6110935 2208444..2209238 1 NC_010501.1 catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase 2209238 mhpD 6110935 mhpD Pseudomonas putida W619 2-keto-4-pentenoate hydratase YP_001748852.1 2208444 D 390235 CDS YP_001748853.1 170721165 6110936 2209250..2210182 1 NC_010501.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2210182 6110936 PputW619_1983 Pseudomonas putida W619 acetaldehyde dehydrogenase YP_001748853.1 2209250 D 390235 CDS YP_001748854.1 170721166 6110937 2210179..2211192 1 NC_010501.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2211192 6110937 PputW619_1984 Pseudomonas putida W619 4-hydroxy-2-ketovalerate aldolase YP_001748854.1 2210179 D 390235 CDS YP_001748855.1 170721167 6110938 2211257..2212489 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ecj:JW5046 predicted 3-hydroxyphenylpropionic transporter; putative 3-hydroxyphenylpropionic transporter MhpT 2212489 6110938 PputW619_1985 Pseudomonas putida W619 putative 3-hydroxyphenylpropionic transporter MhpT YP_001748855.1 2211257 D 390235 CDS YP_001748856.1 170721168 6110939 2212526..2214193 1 NC_010501.1 PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase; sulfatase 2214193 6110939 PputW619_1986 Pseudomonas putida W619 sulfatase YP_001748856.1 2212526 D 390235 CDS YP_001748857.1 170721169 6110940 2214248..2215540 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pap:PSPA7_4765 probable porin; outer membrane porin 2215540 6110940 PputW619_1987 Pseudomonas putida W619 outer membrane porin YP_001748857.1 2214248 D 390235 CDS YP_001748858.1 170721170 6110941 2215589..2217883 1 NC_010501.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2; hypothetical protein 2217883 6110941 PputW619_1988 Pseudomonas putida W619 hypothetical protein YP_001748858.1 2215589 D 390235 CDS YP_001748859.1 170721171 6110942 complement(2218142..2218981) 1 NC_010501.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pae:PA1367 hypothetical protein; PhzF family phenazine biosynthesis protein 2218981 6110942 PputW619_1989 Pseudomonas putida W619 PhzF family phenazine biosynthesis protein YP_001748859.1 2218142 R 390235 CDS YP_001748860.1 170721172 6110943 2219275..2220294 1 NC_010501.1 PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_7449 integrase, catalytic region; integrase catalytic region 2220294 6110943 PputW619_1990 Pseudomonas putida W619 integrase catalytic region YP_001748860.1 2219275 D 390235 CDS YP_001748861.1 170721173 6110945 2222052..2222699 1 NC_010501.1 KEGG: pst:PSPTO_0015 hypothetical protein; hypothetical protein 2222699 6110945 PputW619_1992 Pseudomonas putida W619 hypothetical protein YP_001748861.1 2222052 D 390235 CDS YP_001748862.1 170721174 6110946 complement(2222844..2223542) 1 NC_010501.1 KEGG: gme:Gmet_1202 hypothetical protein; hypothetical protein 2223542 6110946 PputW619_1993 Pseudomonas putida W619 hypothetical protein YP_001748862.1 2222844 R 390235 CDS YP_001748863.1 170721175 6110947 complement(2223972..2224694) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psb:Psyr_1707 regulatory protein, GntR:bacterial regulatory protein, GntR; GntR family transcriptional regulator 2224694 6110947 PputW619_1994 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748863.1 2223972 R 390235 CDS YP_001748864.1 170721176 6110948 complement(2224963..2226696) 1 NC_010501.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2226696 6110948 PputW619_1995 Pseudomonas putida W619 dihydroxy-acid dehydratase YP_001748864.1 2224963 R 390235 CDS YP_001748865.1 170721177 6110949 2226883..2228190 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3226 major facilitator superfamily MFS_1; major facilitator transporter 2228190 6110949 PputW619_1996 Pseudomonas putida W619 major facilitator transporter YP_001748865.1 2226883 D 390235 CDS YP_001748866.1 170721178 6110950 2228219..2229208 1 NC_010501.1 PFAM: protein of unknown function DUF1238; KEGG: pau:PA14_36060 hypothetical protein; hypothetical protein 2229208 6110950 PputW619_1997 Pseudomonas putida W619 hypothetical protein YP_001748866.1 2228219 D 390235 CDS YP_001748867.1 170721179 6110951 2229373..2230947 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pmy:Pmen_0227 aldehyde dehydrogenase; aldehyde dehydrogenase 2230947 6110951 PputW619_1998 Pseudomonas putida W619 aldehyde dehydrogenase YP_001748867.1 2229373 D 390235 CDS YP_001748868.1 170721180 6110952 2231036..2232367 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0742 MFS transporter, ACS family; major facilitator transporter 2232367 6110952 PputW619_1999 Pseudomonas putida W619 major facilitator transporter YP_001748868.1 2231036 D 390235 CDS YP_001748869.1 170721181 6110953 2232377..2233333 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pae:PA2263 probable 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2233333 6110953 PputW619_2000 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001748869.1 2232377 D 390235 CDS YP_001748870.1 170721182 6110954 complement(2233408..2234571) 1 NC_010501.1 KEGG: pmy:Pmen_1016 SMC domain protein; SMC domain-containing protein 2234571 6110954 PputW619_2001 Pseudomonas putida W619 SMC domain-containing protein YP_001748870.1 2233408 R 390235 CDS YP_001748871.1 170721183 6110955 complement(2234684..2234953) 1 NC_010501.1 KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 2234953 6110955 PputW619_2002 Pseudomonas putida W619 hypothetical protein YP_001748871.1 2234684 R 390235 CDS YP_001748872.1 170721184 6110956 complement(2235121..2235363) 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 2235363 6110956 PputW619_2003 Pseudomonas putida W619 hypothetical protein YP_001748872.1 2235121 R 390235 CDS YP_001748873.1 170721185 6110957 complement(2236231..2237106) 1 NC_010501.1 KEGG: bpt:Bpet0543 conserved hypothetical protein, putative esterase/lipase; putative esterase/lipase 2237106 6110957 PputW619_2004 Pseudomonas putida W619 putative esterase/lipase YP_001748873.1 2236231 R 390235 CDS YP_001748874.1 170721186 6110958 complement(2237265..2238608) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pau:PA14_58410 putative outer membrane porin; outer membrane porin 2238608 6110958 PputW619_2005 Pseudomonas putida W619 outer membrane porin YP_001748874.1 2237265 R 390235 CDS YP_001748875.1 170721187 6110959 complement(2238693..2239622) 1 NC_010501.1 KEGG: hau:Haur_0331 hypothetical protein; esterase/lipase-like protein 2239622 6110959 PputW619_2006 Pseudomonas putida W619 esterase/lipase-like protein YP_001748875.1 2238693 R 390235 CDS YP_001748876.1 170721188 6110960 complement(2239690..2240709) 1 NC_010501.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2240709 6110960 PputW619_2007 Pseudomonas putida W619 4-hydroxy-2-ketovalerate aldolase YP_001748876.1 2239690 R 390235 CDS YP_001748877.1 170721189 6110961 complement(2240712..2241659) 1 NC_010501.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2241659 6110961 PputW619_2008 Pseudomonas putida W619 acetaldehyde dehydrogenase YP_001748877.1 2240712 R 390235 CDS YP_001748878.1 170721190 6110962 complement(2241724..2242155) 1 NC_010501.1 PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_5138 endoribonuclease L-PSP; endoribonuclease L-PSP 2242155 6110962 PputW619_2009 Pseudomonas putida W619 endoribonuclease L-PSP YP_001748878.1 2241724 R 390235 CDS YP_001748879.1 170721191 6110963 complement(2242159..2242929) 1 NC_010501.1 PFAM: Hydratase/decarboxylase; KEGG: bxe:Bxe_A1150 4-oxalocrotonate decarboxylase; 4-oxalocrotonate decarboxylase 2242929 6110963 PputW619_2010 Pseudomonas putida W619 4-oxalocrotonate decarboxylase YP_001748879.1 2242159 R 390235 CDS YP_001748880.1 170721192 6110964 complement(2242940..2243722) 1 NC_010501.1 PFAM: Hydratase/decarboxylase; KEGG: rso:RS01662 putative hydratase protein; 4-oxalocrotonate decarboxylase 2243722 6110964 PputW619_2011 Pseudomonas putida W619 4-oxalocrotonate decarboxylase YP_001748880.1 2242940 R 390235 CDS YP_001748881.1 170721193 6110965 complement(2243719..2245191) 1 NC_010501.1 TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bxe:Bxe_A1147 2-aminomuconic 6-semialdehyde dehydrogenase; 2-hydroxymuconic semialdehyde dehydrogenase 2245191 6110965 PputW619_2012 Pseudomonas putida W619 2-hydroxymuconic semialdehyde dehydrogenase YP_001748881.1 2243719 R 390235 CDS YP_001748882.1 170721194 6110966 complement(2245416..2246234) 1 NC_010501.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bxe:Bxe_A1146 2-aminophenol 1,6-dioxygenase, alpha subunit; extradiol ring-cleavage dioxygenase class III protein subunit B 2246234 6110966 PputW619_2013 Pseudomonas putida W619 extradiol ring-cleavage dioxygenase class III protein subunit B YP_001748882.1 2245416 R 390235 CDS YP_001748883.1 170721195 6110967 complement(2246273..2247190) 1 NC_010501.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bxe:Bxe_A1145 2-aminophenol 1,6-dioxygenase, beta subunit; extradiol ring-cleavage dioxygenase class III protein subunit B 2247190 6110967 PputW619_2014 Pseudomonas putida W619 extradiol ring-cleavage dioxygenase class III protein subunit B YP_001748883.1 2246273 R 390235 CDS YP_001748884.1 170721196 6110968 complement(2247219..2247647) 1 NC_010501.1 PFAM: Endoribonuclease L-PSP; KEGG: bxe:Bxe_A1144 putative endoribonuclease, translationalinhibitor protein; endoribonuclease L-PSP 2247647 6110968 PputW619_2015 Pseudomonas putida W619 endoribonuclease L-PSP YP_001748884.1 2247219 R 390235 CDS YP_001748885.1 170721197 6110969 2247882..2248385 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: bxe:Bxe_A1143 transcriptional regulator, MarR family; MarR family transcriptional regulator 2248385 6110969 PputW619_2016 Pseudomonas putida W619 MarR family transcriptional regulator YP_001748885.1 2247882 D 390235 CDS YP_001748886.1 170721198 6110970 complement(2248530..2249084) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 2249084 6110970 PputW619_2017 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748886.1 2248530 R 390235 CDS YP_001748887.1 170721199 6110971 2249214..2250053 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0311 alpha/beta hydrolase; alpha/beta hydrolase fold family protein 2250053 6110971 PputW619_2018 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001748887.1 2249214 D 390235 CDS YP_001748888.1 170721200 6110972 2250117..2251118 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA1904 probable zinc-binding dehydrogenase; alcohol dehydrogenase 2251118 6110972 PputW619_2019 Pseudomonas putida W619 alcohol dehydrogenase YP_001748888.1 2250117 D 390235 CDS YP_001748889.1 170721201 6110973 2251236..2251649 1 NC_010501.1 PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pst:PSPTO_1860 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 2251649 6110973 PputW619_2020 Pseudomonas putida W619 putative thiol-disulfide oxidoreductase DCC YP_001748889.1 2251236 D 390235 CDS YP_001748890.1 170721202 6110974 2251634..2252194 1 NC_010501.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2252194 6110974 PputW619_2021 Pseudomonas putida W619 GTP cyclohydrolase I YP_001748890.1 2251634 D 390235 CDS YP_001748891.1 170721203 6110975 2252230..2252688 1 NC_010501.1 KEGG: psb:Psyr_2639 hypothetical protein; hypothetical protein 2252688 6110975 PputW619_2022 Pseudomonas putida W619 hypothetical protein YP_001748891.1 2252230 D 390235 CDS YP_001748892.1 170721204 6110976 complement(2252725..2253111) 1 NC_010501.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: kpn:KPN_01138 hypothetical protein; cupin 2253111 6110976 PputW619_2023 Pseudomonas putida W619 cupin YP_001748892.1 2252725 R 390235 CDS YP_001748893.1 170721205 6110977 complement(2253183..2254007) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pae:PA2489 probable transcriptional regulator; AraC family transcriptional regulator 2254007 6110977 PputW619_2024 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748893.1 2253183 R 390235 CDS YP_001748894.1 170721206 6110978 complement(2254032..2255555) 1 NC_010501.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2255555 6110978 PputW619_2025 Pseudomonas putida W619 filamentation induced by cAMP protein fic YP_001748894.1 2254032 R 390235 CDS YP_001748895.1 170721207 6110979 complement(2255825..2256937) 1 NC_010501.1 PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0328 protein of unknown function DUF453; hypothetical protein 2256937 6110979 PputW619_2026 Pseudomonas putida W619 hypothetical protein YP_001748895.1 2255825 R 390235 CDS YP_001748896.1 170721208 6110980 complement(2256940..2257656) 1 NC_010501.1 TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: spe:Spro_2091 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; hypothetical protein 2257656 6110980 PputW619_2027 Pseudomonas putida W619 hypothetical protein YP_001748896.1 2256940 R 390235 CDS YP_001748897.1 170721209 6110981 complement(2257653..2258387) 1 NC_010501.1 PFAM: LmbE family protein; KEGG: kpn:KPN_04049 hypothetical protein; LmbE family protein 2258387 6110981 PputW619_2028 Pseudomonas putida W619 LmbE family protein YP_001748897.1 2257653 R 390235 CDS YP_001748898.1 170721210 6110982 2258548..2259741 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2093 transcriptional regulator, LysR family; LysR family transcriptional regulator 2259741 6110982 PputW619_2029 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748898.1 2258548 D 390235 CDS YP_001748899.1 170721211 6110983 complement(2259784..2261046) 1 NC_010501.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase 2261046 6110983 PputW619_2030 Pseudomonas putida W619 protocatechuate 4,5-dioxygenase YP_001748899.1 2259784 R 390235 CDS YP_001748900.1 170721212 6110984 complement(2261315..2261926) 1 NC_010501.1 PFAM: Ankyrin; KEGG: pap:PSPA7_5252 hypothetical protein; ankyrin 2261926 6110984 PputW619_2031 Pseudomonas putida W619 ankyrin YP_001748900.1 2261315 R 390235 CDS YP_001748901.1 170721213 6110985 complement(2261932..2263473) 1 NC_010501.1 PFAM: Catalase domain protein; KEGG: pen:PSEEN2810 catalase (hydroperoxidase II); catalase 2263473 6110985 PputW619_2032 Pseudomonas putida W619 catalase YP_001748901.1 2261932 R 390235 CDS YP_001748902.1 170721214 6110986 2263699..2263815 1 NC_010501.1 KEGG: psb:Psyr_2216 hypothetical protein; hypothetical protein 2263815 6110986 PputW619_2033 Pseudomonas putida W619 hypothetical protein YP_001748902.1 2263699 D 390235 CDS YP_001748903.1 170721215 6110987 2264036..2265109 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: kra:Krad_0968 aldo/keto reductase; aldo/keto reductase 2265109 6110987 PputW619_2034 Pseudomonas putida W619 aldo/keto reductase YP_001748903.1 2264036 D 390235 CDS YP_001748904.1 170721216 6110988 complement(2265117..2266082) 1 NC_010501.1 PFAM: PfkB domain protein; KEGG: pen:PSEEN1987 fructokinase; ribokinase-like domain-containing protein 2266082 6110988 PputW619_2035 Pseudomonas putida W619 ribokinase-like domain-containing protein YP_001748904.1 2265117 R 390235 CDS YP_001748905.1 170721217 6110989 complement(2266124..2267614) 1 NC_010501.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase; xylulokinase 2267614 6110989 PputW619_2036 Pseudomonas putida W619 xylulokinase YP_001748905.1 2266124 R 390235 CDS YP_001748906.1 170721218 6110990 complement(2267630..2269105) 1 NC_010501.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: pen:PSEEN1989 mannitol dehydrogenase; mannitol dehydrogenase domain-containing protein 2269105 6110990 PputW619_2037 Pseudomonas putida W619 mannitol dehydrogenase domain-containing protein YP_001748906.1 2267630 R 390235 CDS YP_001748907.1 170721219 6110991 complement(2269117..2270229) 1 NC_010501.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1990 ATP-binding component of ABC mannitol transporter; ABC transporter-like protein 2270229 6110991 PputW619_2038 Pseudomonas putida W619 ABC transporter-like protein YP_001748907.1 2269117 R 390235 CDS YP_001748908.1 170721220 6110992 complement(2270293..2271126) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1991 mannitol ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2271126 6110992 PputW619_2039 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748908.1 2270293 R 390235 CDS YP_001748909.1 170721221 6110993 complement(2271137..2272060) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1992 mannitol ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2272060 6110993 PputW619_2040 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001748909.1 2271137 R 390235 CDS YP_001748910.1 170721222 6110994 complement(2272141..2273451) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1993 mannitol ABC transporter, periplasmic mannitol-binding protein; extracellular solute-binding protein 2273451 6110994 PputW619_2041 Pseudomonas putida W619 extracellular solute-binding protein YP_001748910.1 2272141 R 390235 CDS YP_001748911.1 170721223 6110995 complement(2273594..2274499) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1994 transcriptional activator MltR; AraC family transcriptional regulator 2274499 6110995 PputW619_2042 Pseudomonas putida W619 AraC family transcriptional regulator YP_001748911.1 2273594 R 390235 CDS YP_001748912.1 170721224 6110996 2274622..2275335 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3473 transcriptional regulator VanR; GntR family transcriptional regulator 2275335 6110996 PputW619_2043 Pseudomonas putida W619 GntR family transcriptional regulator YP_001748912.1 2274622 D 390235 CDS YP_001748913.1 170721225 6110997 complement(2275342..2276292) 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: psp:PSPPH_2474 vanillate monooxygenase, oxidoreductase subunit; ferredoxin 2276292 6110997 PputW619_2044 Pseudomonas putida W619 ferredoxin YP_001748913.1 2275342 R 390235 CDS YP_001748914.1 170721226 6110998 complement(2276305..2277372) 1 NC_010501.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein 2277372 6110998 PputW619_2045 Pseudomonas putida W619 Rieske (2Fe-2S) domain-containing protein YP_001748914.1 2276305 R 390235 CDS YP_001748915.1 170721227 6110999 complement(2277521..2277991) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: psp:PSPPH_2432 transcriptional regulator, MarR family; MarR family transcriptional regulator 2277991 6110999 PputW619_2046 Pseudomonas putida W619 MarR family transcriptional regulator YP_001748915.1 2277521 R 390235 CDS YP_001748916.1 170721228 6111000 2278190..2279020 1 NC_010501.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 2279020 6111000 PputW619_2047 Pseudomonas putida W619 p-hydroxycinnamoyl CoA hydratase/lyase YP_001748916.1 2278190 D 390235 CDS YP_001748917.1 170721229 6111001 2279096..2280544 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: psp:PSPPH_2434 vanillin dehydrogenase; aldehyde dehydrogenase 2280544 6111001 PputW619_2048 Pseudomonas putida W619 aldehyde dehydrogenase YP_001748917.1 2279096 D 390235 CDS YP_001748918.1 170721230 6111002 2280621..2282504 1 NC_010501.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2282504 6111002 PputW619_2049 Pseudomonas putida W619 feruloyl-CoA synthase YP_001748918.1 2280621 D 390235 CDS YP_001748919.1 170721231 6111003 2282501..2283742 1 NC_010501.1 KEGG: psb:Psyr_2725 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2283742 6111003 PputW619_2050 Pseudomonas putida W619 acetyl-CoA acetyltransferase YP_001748919.1 2282501 D 390235 CDS YP_001748920.1 170721232 6111004 2283757..2285505 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dac:Daci_2761 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2285505 6111004 PputW619_2051 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001748920.1 2283757 D 390235 CDS YP_001748921.1 170721233 6111005 complement(2285486..2286496) 1 NC_010501.1 PFAM: protein of unknown function DUF323; KEGG: mpt:Mpe_A2681 hypothetical protein; hypothetical protein 2286496 6111005 PputW619_2052 Pseudomonas putida W619 hypothetical protein YP_001748921.1 2285486 R 390235 CDS YP_001748922.1 170721234 6111006 complement(2286493..2288163) 1 NC_010501.1 PFAM: sulfatase; KEGG: pap:PSPA7_3903 arylsulfatase (AS) (aryl-sulfate sulphohydrolase); sulfatase 2288163 6111006 PputW619_2053 Pseudomonas putida W619 sulfatase YP_001748922.1 2286493 R 390235 CDS YP_001748923.1 170721235 6111007 2288412..2289803 1 NC_010501.1 KEGG: pap:PSPA7_3902 hypothetical protein; hypothetical protein 2289803 6111007 PputW619_2054 Pseudomonas putida W619 hypothetical protein YP_001748923.1 2288412 D 390235 CDS YP_001748924.1 170721236 6111008 2289840..2291045 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psb:Psyr_2731 general substrate transporter:major facilitator superfamily; putative 3-hydroxyphenylpropionic transporter MhpT 2291045 6111008 PputW619_2055 Pseudomonas putida W619 putative 3-hydroxyphenylpropionic transporter MhpT YP_001748924.1 2289840 D 390235 CDS YP_001748925.1 170721237 6111009 complement(2291126..2291635) 1 NC_010501.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: reh:H16_A2722 cytosine/adenosine deaminase; CMP/dCMP deaminase 2291635 6111009 PputW619_2056 Pseudomonas putida W619 CMP/dCMP deaminase YP_001748925.1 2291126 R 390235 CDS YP_001748926.1 170721238 6111010 complement(2291670..2293004) 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pfl:PFL_5746 xanthine/uracil permease family protein; xanthine permease 2293004 6111010 PputW619_2057 Pseudomonas putida W619 xanthine permease YP_001748926.1 2291670 R 390235 CDS YP_001748927.1 170721239 6111011 2293191..2294105 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_2728 transcriptional regulator, LysR family; LysR family transcriptional regulator 2294105 6111011 PputW619_2058 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748927.1 2293191 D 390235 CDS YP_001748928.1 170721240 6111012 2294204..2294677 1 NC_010501.1 KEGG: pfo:Pfl_2413 hypothetical protein; hypothetical protein 2294677 6111012 PputW619_2059 Pseudomonas putida W619 hypothetical protein YP_001748928.1 2294204 D 390235 CDS YP_001748929.1 170721241 6111013 complement(2294904..2295908) 1 NC_010501.1 KEGG: rme:Rmet_3749 hypothetical protein; hypothetical protein 2295908 6111013 PputW619_2060 Pseudomonas putida W619 hypothetical protein YP_001748929.1 2294904 R 390235 CDS YP_001748930.1 170721242 6111014 complement(2295911..2296177) 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: bca:BCE_0834 hypothetical protein; hypothetical protein 2296177 6111014 PputW619_2061 Pseudomonas putida W619 hypothetical protein YP_001748930.1 2295911 R 390235 CDS YP_001748931.1 170721243 6111015 complement(2296213..2297847) 1 NC_010501.1 KEGG: rme:Rmet_3750 hypothetical protein; hypothetical protein 2297847 6111015 PputW619_2062 Pseudomonas putida W619 hypothetical protein YP_001748931.1 2296213 R 390235 CDS YP_001748932.1 170721244 6111016 complement(2298060..2298932) 1 NC_010501.1 KEGG: psa:PST_0849 predicted transcriptional regulator; transcriptional regulator 2298932 6111016 PputW619_2063 Pseudomonas putida W619 transcriptional regulator YP_001748932.1 2298060 R 390235 CDS YP_001748933.1 170721245 6111017 2299052..2299309 1 NC_010501.1 hypothetical protein 2299309 6111017 PputW619_2064 Pseudomonas putida W619 hypothetical protein YP_001748933.1 2299052 D 390235 CDS YP_001748934.1 170721246 6111018 complement(2299319..2300308) 1 NC_010501.1 PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase; 5'-nucleotidase 2300308 6111018 PputW619_2065 Pseudomonas putida W619 5'-nucleotidase YP_001748934.1 2299319 R 390235 CDS YP_001748935.1 170721247 6111019 2300482..2301492 1 NC_010501.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 2301492 6111019 PputW619_2066 Pseudomonas putida W619 alcohol dehydrogenase YP_001748935.1 2300482 D 390235 CDS YP_001748936.1 170721248 6111020 complement(2301597..2302343) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_0120 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2302343 6111020 PputW619_2067 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001748936.1 2301597 R 390235 CDS YP_001748937.1 170721249 6111021 complement(2302356..2303042) 1 NC_010501.1 PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_0745 transcriptional regulator, fis family; ThiJ/PfpI domain-containing protein 2303042 6111021 PputW619_2068 Pseudomonas putida W619 ThiJ/PfpI domain-containing protein YP_001748937.1 2302356 R 390235 CDS YP_001748938.1 170721250 6111022 complement(2303289..2304440) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A5231 major facilitator superfamily (MFS_1) transporter; major facilitator transporter 2304440 6111022 PputW619_2069 Pseudomonas putida W619 major facilitator transporter YP_001748938.1 2303289 R 390235 CDS YP_001748939.1 170721251 6111023 complement(2304495..2306177) 1 NC_010501.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bur:Bcep18194_B2780 amidohydrolase; amidohydrolase 3 2306177 6111023 PputW619_2070 Pseudomonas putida W619 amidohydrolase 3 YP_001748939.1 2304495 R 390235 CDS YP_001748940.1 170721252 6111024 2306310..2306930 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr0237 hypothetical protein; TetR family transcriptional regulator 2306930 6111024 PputW619_2071 Pseudomonas putida W619 TetR family transcriptional regulator YP_001748940.1 2306310 D 390235 CDS YP_001748941.1 170721253 6111025 complement(2306940..2307563) 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: asa:ASA_2515 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2307563 6111025 PputW619_2072 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001748941.1 2306940 R 390235 CDS YP_001748942.1 170721254 6111026 complement(2308306..2308473) 1 NC_010501.1 hypothetical protein 2308473 6111026 PputW619_2073 Pseudomonas putida W619 hypothetical protein YP_001748942.1 2308306 R 390235 CDS YP_001748943.1 170721255 6111027 complement(2308602..2310746) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2997 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2310746 6111027 PputW619_2074 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001748943.1 2308602 R 390235 CDS YP_001748944.1 170721256 6111028 2310963..2312282 1 NC_010501.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2996 Na+/H+ antiporter, NahC family; Na+/H+ antiporter NhaC 2312282 6111028 PputW619_2075 Pseudomonas putida W619 Na+/H+ antiporter NhaC YP_001748944.1 2310963 D 390235 CDS YP_001748945.1 170721257 6111029 complement(2312287..2313297) 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN2995 transmembrane sensor, FecR family; anti-FecI sigma factor FecR 2313297 6111029 PputW619_2076 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001748945.1 2312287 R 390235 CDS YP_001748946.1 170721258 6111030 2313541..2314014 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN2994 transcriptional regulator, MarR family; MarR family transcriptional regulator 2314014 6111030 PputW619_2077 Pseudomonas putida W619 MarR family transcriptional regulator YP_001748946.1 2313541 D 390235 CDS YP_001748947.1 170721259 6111031 2314043..2315236 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2993 HlyD family secretion protein; secretion protein HlyD family protein 2315236 6111031 PputW619_2078 Pseudomonas putida W619 secretion protein HlyD family protein YP_001748947.1 2314043 D 390235 CDS YP_001748948.1 170721260 6111032 2315233..2316768 1 NC_010501.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2992 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 2316768 6111032 PputW619_2079 Pseudomonas putida W619 EmrB/QacA family drug resistance transporter YP_001748948.1 2315233 D 390235 CDS YP_001748949.1 170721261 6111033 complement(2316864..2317883) 1 NC_010501.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pfo:Pfl_1969 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein 2317883 6111033 PputW619_2080 Pseudomonas putida W619 alpha/beta hydrolase domain-containing protein YP_001748949.1 2316864 R 390235 CDS YP_001748950.1 170721262 6111034 2318030..2318914 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1970 transcriptional regulator, LysR family; LysR family transcriptional regulator 2318914 6111034 PputW619_2081 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748950.1 2318030 D 390235 CDS YP_001748951.1 170721263 6111035 2318981..2319382 1 NC_010501.1 KEGG: pen:PSEEN3331 hypothetical protein; hypothetical protein 2319382 6111035 PputW619_2082 Pseudomonas putida W619 hypothetical protein YP_001748951.1 2318981 D 390235 CDS YP_001748952.1 170721264 6111036 2319495..2319716 1 NC_010501.1 PFAM: MbtH domain protein; KEGG: pen:PSEEN3329 hypothetical protein; MbtH domain-containing protein 2319716 6111036 PputW619_2083 Pseudomonas putida W619 MbtH domain-containing protein YP_001748952.1 2319495 D 390235 CDS YP_001748953.1 170721265 6111037 2319713..2320432 1 NC_010501.1 PFAM: Thioesterase; KEGG: pen:PSEEN3328 thioesterase involved in non-ribosomal peptide biosynthesis; thioesterase 2320432 6111037 PputW619_2084 Pseudomonas putida W619 thioesterase YP_001748953.1 2319713 D 390235 CDS YP_001748954.1 170721266 6111038 2320490..2321041 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3325 hydrolase, isochorismatase family; isochorismatase hydrolase 2321041 6111038 PputW619_2085 Pseudomonas putida W619 isochorismatase hydrolase YP_001748954.1 2320490 D 390235 CDS YP_001748955.1 170721267 6111039 2321068..2322120 1 NC_010501.1 PFAM: protein of unknown function DUF1615; KEGG: pen:PSEEN3324 hypothetical protein; hypothetical protein 2322120 6111039 PputW619_2086 Pseudomonas putida W619 hypothetical protein YP_001748955.1 2321068 D 390235 CDS YP_001748956.1 170721268 6111040 complement(2322179..2323048) 1 NC_010501.1 KEGG: pen:PSEEN3242 hypothetical protein; hypothetical protein 2323048 6111040 PputW619_2087 Pseudomonas putida W619 hypothetical protein YP_001748956.1 2322179 R 390235 CDS YP_001748957.1 170721269 6111041 complement(2323045..2323944) 1 NC_010501.1 PFAM: ABC-3 protein; KEGG: pen:PSEEN3241 cation ABC transporter, permease protein; ABC-3 protein 2323944 6111041 PputW619_2088 Pseudomonas putida W619 ABC-3 protein YP_001748957.1 2323045 R 390235 CDS YP_001748958.1 170721270 6111042 complement(2323944..2324690) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3240 cation ABC transporter, ATP-binding protein; ABC transporter-like protein 2324690 6111042 PputW619_2089 Pseudomonas putida W619 ABC transporter-like protein YP_001748958.1 2323944 R 390235 CDS YP_001748959.1 170721271 6111043 complement(2324687..2325589) 1 NC_010501.1 PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN3239 cation ABC transporter, periplasmic cation-binding protein; periplasmic solute binding protein 2325589 6111043 PputW619_2090 Pseudomonas putida W619 periplasmic solute binding protein YP_001748959.1 2324687 R 390235 CDS YP_001748960.1 170721272 6111044 complement(2325607..2326191) 1 NC_010501.1 KEGG: pen:PSEEN3238 hypothetical protein; hypothetical protein 2326191 6111044 PputW619_2091 Pseudomonas putida W619 hypothetical protein YP_001748960.1 2325607 R 390235 CDS YP_001748961.1 170721273 6111045 complement(2326188..2326508) 1 NC_010501.1 KEGG: pen:PSEEN3237 hypothetical protein; hypothetical protein 2326508 6111045 PputW619_2092 Pseudomonas putida W619 hypothetical protein YP_001748961.1 2326188 R 390235 CDS YP_001748962.1 170721274 6111046 complement(2326505..2327044) 1 NC_010501.1 KEGG: pen:PSEEN3236 hypothetical protein; hypothetical protein 2327044 6111046 PputW619_2093 Pseudomonas putida W619 hypothetical protein YP_001748962.1 2326505 R 390235 CDS YP_001748963.1 170721275 6111047 complement(2327041..2328234) 1 NC_010501.1 PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN3235 hypothetical protein; peptidase 2328234 6111047 PputW619_2094 Pseudomonas putida W619 peptidase YP_001748963.1 2327041 R 390235 CDS YP_001748964.1 170721276 6111048 complement(2328404..2329738) 1 NC_010501.1 KEGG: pen:PSEEN3223 L-ornithine N5-oxygenase PvdA; L-ornithine N5-oxygenase PvdA 2329738 6111048 PputW619_2095 Pseudomonas putida W619 L-ornithine N5-oxygenase PvdA YP_001748964.1 2328404 R 390235 CDS YP_001748965.1 170721277 6111049 2329939..2330370 1 NC_010501.1 KEGG: pen:PSEEN3219 hypothetical protein; hypothetical protein 2330370 6111049 PputW619_2096 Pseudomonas putida W619 hypothetical protein YP_001748965.1 2329939 D 390235 CDS YP_001748966.1 170721278 6111050 complement(2330430..2331320) 1 NC_010501.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2331320 pbpG 6111050 pbpG Pseudomonas putida W619 D-alanyl-D-alanine endopeptidase YP_001748966.1 2330430 R 390235 CDS YP_001748967.1 170721279 6111051 complement(2331600..2331782) 1 NC_010501.1 KEGG: pen:PSEEN3216 hypothetical protein; hypothetical protein 2331782 6111051 PputW619_2098 Pseudomonas putida W619 hypothetical protein YP_001748967.1 2331600 R 390235 CDS YP_001748968.1 170721280 6111052 2332003..2332824 1 NC_010501.1 catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2332824 6111052 PputW619_2099 Pseudomonas putida W619 shikimate 5-dehydrogenase YP_001748968.1 2332003 D 390235 CDS YP_001748969.1 170721281 6111053 complement(2332883..2333125) 1 NC_010501.1 KEGG: pen:PSEEN3213 hypothetical protein; hypothetical protein 2333125 6111053 PputW619_2100 Pseudomonas putida W619 hypothetical protein YP_001748969.1 2332883 R 390235 CDS YP_001748970.1 170721282 6111054 complement(2333235..2333762) 1 NC_010501.1 KEGG: pen:PSEEN3212 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2333762 6111054 PputW619_2101 Pseudomonas putida W619 lactoylglutathione lyase YP_001748970.1 2333235 R 390235 CDS YP_001748971.1 170721283 6111055 complement(2333987..2334346) 1 NC_010501.1 KEGG: pen:PSEEN3211 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit 2334346 6111055 PputW619_2102 Pseudomonas putida W619 transcriptional regulator MvaT, P16 subunit YP_001748971.1 2333987 R 390235 CDS YP_001748972.1 170721284 6111056 2334690..2335991 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN3209 OprD-like porin; outer membrane porin 2335991 6111056 PputW619_2103 Pseudomonas putida W619 outer membrane porin YP_001748972.1 2334690 D 390235 CDS YP_001748973.1 170721285 6111057 2336057..2336812 1 NC_010501.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2336812 6111057 PputW619_2104 Pseudomonas putida W619 precorrin 6A synthase YP_001748973.1 2336057 D 390235 CDS YP_001748974.1 170721286 6111058 complement(2336857..2337207) 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3207 response regulator; response regulator receiver protein 2337207 6111058 PputW619_2105 Pseudomonas putida W619 response regulator receiver protein YP_001748974.1 2336857 R 390235 CDS YP_001748975.1 170721287 6111059 2337457..2340924 1 NC_010501.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: pen:PSEEN3205 sensor histidine kinase/response regulator (hybrid); multi-sensor hybrid histidine kinase 2340924 6111059 PputW619_2106 Pseudomonas putida W619 multi-sensor hybrid histidine kinase YP_001748975.1 2337457 D 390235 CDS YP_001748976.1 170721288 6111060 2340921..2341742 1 NC_010501.1 PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3204 chemotaxis protein methyltransferase, CheR-like; CheR-type MCP methyltransferase 2341742 6111060 PputW619_2107 Pseudomonas putida W619 CheR-type MCP methyltransferase YP_001748976.1 2340921 D 390235 CDS YP_001748977.1 170721289 6111061 2341739..2342314 1 NC_010501.1 PFAM: CheB methylesterase; KEGG: pen:PSEEN3203 methylesterase, CheB-like; CheB methylesterase 2342314 6111061 PputW619_2108 Pseudomonas putida W619 CheB methylesterase YP_001748977.1 2341739 D 390235 CDS YP_001748978.1 170721290 6111062 2342308..2343534 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3202 response regulator/sensor histidine kinase (hybrid); response regulator receiver sensor signal transduction histidine kinase 2343534 6111062 PputW619_2109 Pseudomonas putida W619 response regulator receiver sensor signal transduction histidine kinase YP_001748978.1 2342308 D 390235 CDS YP_001748979.1 170721291 6111063 2343582..2343959 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3201 response regulator; response regulator receiver protein 2343959 6111063 PputW619_2110 Pseudomonas putida W619 response regulator receiver protein YP_001748979.1 2343582 D 390235 CDS YP_001748980.1 170721292 6111064 2344086..2345060 1 NC_010501.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2345060 6111064 PputW619_2111 Pseudomonas putida W619 delta-aminolevulinic acid dehydratase YP_001748980.1 2344086 D 390235 CDS YP_001748981.1 170721293 6111065 2345152..2346654 1 NC_010501.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: stm:STM4290 proline/glycine betaine transporter; proline/glycine betaine transporter 2346654 6111065 PputW619_2112 Pseudomonas putida W619 proline/glycine betaine transporter YP_001748981.1 2345152 D 390235 CDS YP_001748982.1 170721294 6111066 2346688..2347578 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3287 transcriptional regulator, LysR family; LysR family transcriptional regulator 2347578 6111066 PputW619_2113 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748982.1 2346688 D 390235 CDS YP_001748983.1 170721295 6111067 2347693..2348397 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2348397 6111067 PputW619_2114 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001748983.1 2347693 D 390235 CDS YP_001748984.1 170721296 6111068 complement(2348398..2349015) 1 NC_010501.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2349015 6111068 PputW619_2115 Pseudomonas putida W619 riboflavin synthase subunit alpha YP_001748984.1 2348398 R 390235 CDS YP_001748985.1 170721297 6111069 complement(2349136..2351202) 1 NC_010501.1 TIGRFAM: trehalose synthase; KEGG: psa:PST_0034 trehalose synthase; trehalose synthase 2351202 6111069 PputW619_2116 Pseudomonas putida W619 trehalose synthase YP_001748985.1 2349136 R 390235 CDS YP_001748986.1 170721298 6111070 complement(2351291..2352208) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_2444 transcriptional regulator, LysR family; LysR family transcriptional regulator 2352208 6111070 PputW619_2117 Pseudomonas putida W619 LysR family transcriptional regulator YP_001748986.1 2351291 R 390235 CDS YP_001748987.1 170721299 6111071 2352328..2353086 1 NC_010501.1 PFAM: LamB/YcsF family protein; KEGG: pfl:PFL_4551 hypothetical protein; hypothetical protein 2353086 6111071 PputW619_2118 Pseudomonas putida W619 hypothetical protein YP_001748987.1 2352328 D 390235 CDS YP_001748988.1 170721300 6111072 2353178..2354065 1 NC_010501.1 PFAM: Allophanate hydrolase subunit 1; KEGG: psb:Psyr_2721 protein of unknown function DUF213; allophanate hydrolase subunit 1 2354065 6111072 PputW619_2119 Pseudomonas putida W619 allophanate hydrolase subunit 1 YP_001748988.1 2353178 D 390235 CDS YP_001748989.1 170721301 6111073 2354062..2355033 1 NC_010501.1 KEGG: pfl:PFL_4547 UreA amidolyase-related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 2355033 6111073 PputW619_2120 Pseudomonas putida W619 urea amidolyase-like protein YP_001748989.1 2354062 D 390235 CDS YP_001748990.1 170721302 6111074 complement(2355108..2357276) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:Pfl_2462 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 2357276 6111074 PputW619_2121 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001748990.1 2355108 R 390235 CDS YP_001748991.1 170721303 6111075 complement(2357442..2358278) 1 NC_010501.1 KEGG: pen:PSEEN2355 hypothetical protein; hypothetical protein 2358278 6111075 PputW619_2122 Pseudomonas putida W619 hypothetical protein YP_001748991.1 2357442 R 390235 CDS YP_001748992.1 170721304 6111076 complement(2358275..2359495) 1 NC_010501.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2356 hypothetical protein; radical SAM domain-containing protein 2359495 6111076 PputW619_2123 Pseudomonas putida W619 radical SAM domain-containing protein YP_001748992.1 2358275 R 390235 CDS YP_001748993.1 170721305 6111077 2359727..2360773 1 NC_010501.1 PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2364 hypothetical protein; type 11 methyltransferase 2360773 6111077 PputW619_2124 Pseudomonas putida W619 type 11 methyltransferase YP_001748993.1 2359727 D 390235 CDS YP_001748994.1 170721306 6111078 complement(2360993..2362192) 1 NC_010501.1 PFAM: Saccharopine dehydrogenase; KEGG: pen:PSEEN2365 hypothetical protein; saccharopine dehydrogenase 2362192 6111078 PputW619_2125 Pseudomonas putida W619 saccharopine dehydrogenase YP_001748994.1 2360993 R 390235 CDS YP_001748995.1 170721307 6111079 complement(2362270..2363367) 1 NC_010501.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN2366 carboxynorspermidine decarboxylase NspC; carboxynorspermidine decarboxylase 2363367 6111079 PputW619_2126 Pseudomonas putida W619 carboxynorspermidine decarboxylase YP_001748995.1 2362270 R 390235 CDS YP_001748996.1 170721308 6111080 2363604..2364062 1 NC_010501.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: psp:PSPPH_2817 phosphoesterase, putative; phosphodiesterase 2364062 6111080 PputW619_2127 Pseudomonas putida W619 phosphodiesterase YP_001748996.1 2363604 D 390235 CDS YP_001748997.1 170721309 6111081 complement(2364114..2365031) 1 NC_010501.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN2008 L-serine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 2365031 6111081 PputW619_2128 Pseudomonas putida W619 pyridoxal-5'-phosphate-dependent protein subunit beta YP_001748997.1 2364114 R 390235 CDS YP_001748998.1 170721310 6111082 complement(2365121..2366347) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2622 transporter, MFS family; major facilitator transporter 2366347 6111082 PputW619_2129 Pseudomonas putida W619 major facilitator transporter YP_001748998.1 2365121 R 390235 CDS YP_001748999.1 170721311 6111083 2366677..2366928 1 NC_010501.1 hypothetical protein 2366928 6111083 PputW619_2130 Pseudomonas putida W619 hypothetical protein YP_001748999.1 2366677 D 390235 CDS YP_001749000.1 170721312 6111084 complement(2367038..2367304) 1 NC_010501.1 hypothetical protein 2367304 6111084 PputW619_2131 Pseudomonas putida W619 hypothetical protein YP_001749000.1 2367038 R 390235 CDS YP_001749001.1 170721313 6111085 complement(2367446..2368189) 1 NC_010501.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: pfl:PFL_4066 transcriptional regulator-related protein; Crp/FNR family transcriptional regulator 2368189 6111085 PputW619_2132 Pseudomonas putida W619 Crp/FNR family transcriptional regulator YP_001749001.1 2367446 R 390235 CDS YP_001749002.1 170721314 6111086 complement(2368233..2376878) 1 NC_010501.1 PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: pfl:PFL_4065 cyclic beta 1-2 glucan synthetase, putative; glycosyltransferase 2376878 6111086 PputW619_2133 Pseudomonas putida W619 glycosyltransferase YP_001749002.1 2368233 R 390235 CDS YP_001749003.1 170721315 6111087 2377086..2377724 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: bxe:Bxe_B0653 transcriptional regulator, TetR family; TetR family transcriptional regulator 2377724 6111087 PputW619_2134 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749003.1 2377086 D 390235 CDS YP_001749004.1 170721316 6111088 complement(2377741..2381304) 1 NC_010501.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cytochrome c class I; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: spe:Spro_2315 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 2381304 6111088 PputW619_2135 Pseudomonas putida W619 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001749004.1 2377741 R 390235 CDS YP_001749005.1 170721317 6111089 complement(2381320..2381787) 1 NC_010501.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pap:PSPA7_3672 probable oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2381787 6111089 PputW619_2136 Pseudomonas putida W619 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001749005.1 2381320 R 390235 CDS YP_001749006.1 170721318 6111090 complement(2381956..2382432) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: azc:AZC_2473 transcriptional regulator; MarR family transcriptional regulator 2382432 6111090 PputW619_2137 Pseudomonas putida W619 MarR family transcriptional regulator YP_001749006.1 2381956 R 390235 CDS YP_001749007.1 170721319 6111091 complement(2382501..2383553) 1 NC_010501.1 KEGG: spe:Spro_2312 hypothetical protein; hypothetical protein 2383553 6111091 PputW619_2138 Pseudomonas putida W619 hypothetical protein YP_001749007.1 2382501 R 390235 CDS YP_001749008.1 170721320 6111092 2383577..2383702 1 NC_010501.1 hypothetical protein 2383702 6111092 PputW619_2139 Pseudomonas putida W619 hypothetical protein YP_001749008.1 2383577 D 390235 CDS YP_001749009.1 170721321 6111093 2383881..2385029 1 NC_010501.1 PFAM: monooxygenase FAD-binding; KEGG: spe:Spro_2311 monooxygenase FAD-binding; monooxygenase FAD-binding 2385029 6111093 PputW619_2140 Pseudomonas putida W619 monooxygenase FAD-binding YP_001749009.1 2383881 D 390235 CDS YP_001749010.1 170721322 6111094 2385026..2385832 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: spe:Spro_2310 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2385832 6111094 PputW619_2141 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001749010.1 2385026 D 390235 CDS YP_001749011.1 170721323 6111095 2385846..2386598 1 NC_010501.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_2309 Asp/Glu racemase; Asp/Glu/hydantoin racemase 2386598 6111095 PputW619_2142 Pseudomonas putida W619 Asp/Glu/hydantoin racemase YP_001749011.1 2385846 D 390235 CDS YP_001749012.1 170721324 6111096 2386613..2387254 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: spe:Spro_2308 N-carbamoylsarcosine amidase; isochorismatase hydrolase 2387254 6111096 PputW619_2143 Pseudomonas putida W619 isochorismatase hydrolase YP_001749012.1 2386613 D 390235 CDS YP_001749013.1 170721325 6111097 2387464..2388777 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2307 major facilitator superfamily MFS_1; major facilitator transporter 2388777 6111097 PputW619_2144 Pseudomonas putida W619 major facilitator transporter YP_001749013.1 2387464 D 390235 CDS YP_001749014.1 170721326 6111098 2388915..2390210 1 NC_010501.1 PFAM: outer membrane porin; KEGG: psa:PST_1676 benzoate-specific porin; outer membrane porin 2390210 6111098 PputW619_2145 Pseudomonas putida W619 outer membrane porin YP_001749014.1 2388915 D 390235 CDS YP_001749015.1 170721327 6111099 complement(2390223..2391935) 1 NC_010501.1 proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase 2391935 6111099 PputW619_2146 Pseudomonas putida W619 putative FAD-binding dehydrogenase YP_001749015.1 2390223 R 390235 CDS YP_001749016.1 170721328 6111100 2392121..2392897 1 NC_010501.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pfl:PFL_5393 transcriptional regulator, IclR family; IclR family transcriptional regulator 2392897 6111100 PputW619_2147 Pseudomonas putida W619 IclR family transcriptional regulator YP_001749016.1 2392121 D 390235 CDS YP_001749017.1 170721329 6111101 2393063..2394115 1 NC_010501.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pfl:PFL_5392 oxidoreductase, putative; oxidoreductase domain-containing protein 2394115 6111101 PputW619_2148 Pseudomonas putida W619 oxidoreductase domain-containing protein YP_001749017.1 2393063 D 390235 CDS YP_001749018.1 170721330 6111102 2394167..2394982 1 NC_010501.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase domain-containing protein 2394982 6111102 PputW619_2149 Pseudomonas putida W619 xylose isomerase domain-containing protein YP_001749018.1 2394167 D 390235 CDS YP_001749019.1 170721331 6111103 complement(2395076..2396767) 1 NC_010501.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00384 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2396767 6111103 PputW619_2150 Pseudomonas putida W619 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001749019.1 2395076 R 390235 CDS YP_001749020.1 170721332 6111104 complement(2396789..2397097) 1 NC_010501.1 PFAM: NIPSNAP family containing protein; KEGG: kpn:KPN_00385 NIPSNAP; NIPSNAP family protein 2397097 6111104 PputW619_2151 Pseudomonas putida W619 NIPSNAP family protein YP_001749020.1 2396789 R 390235 CDS YP_001749021.1 170721333 6111105 complement(2397094..2398827) 1 NC_010501.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00386 putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2398827 6111105 PputW619_2152 Pseudomonas putida W619 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001749021.1 2397094 R 390235 CDS YP_001749022.1 170721334 6111106 complement(2398832..2399641) 1 NC_010501.1 PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bxe:Bxe_C0879 shikimate 5-dehydrogenase; shikimate dehydrogenase 2399641 6111106 PputW619_2153 Pseudomonas putida W619 shikimate dehydrogenase YP_001749022.1 2398832 R 390235 CDS YP_001749023.1 170721335 6111107 2399818..2400588 1 NC_010501.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpn:KPN_00388 bacterial regulatory proteins, IclR; IclR family transcriptional regulator 2400588 6111107 PputW619_2154 Pseudomonas putida W619 IclR family transcriptional regulator YP_001749023.1 2399818 D 390235 CDS YP_001749024.1 170721336 6111108 complement(2400640..2400855) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4733 hypothetical protein; hypothetical protein 2400855 6111108 PputW619_2155 Pseudomonas putida W619 hypothetical protein YP_001749024.1 2400640 R 390235 CDS YP_001749025.1 170721337 6111109 complement(2401070..2401249) 1 NC_010501.1 PFAM: CsbD family protein; KEGG: pfo:Pfl_4351 CsbD-like; CsbD family protein 2401249 6111109 PputW619_2156 Pseudomonas putida W619 CsbD family protein YP_001749025.1 2401070 R 390235 CDS YP_001749026.1 170721338 6111110 complement(2401323..2402309) 1 NC_010501.1 KEGG: spe:Spro_2442 hypothetical protein; hypothetical protein 2402309 6111110 PputW619_2157 Pseudomonas putida W619 hypothetical protein YP_001749026.1 2401323 R 390235 CDS YP_001749027.1 170721339 6111111 2402505..2403980 1 NC_010501.1 KEGG: pfl:PFL_2568 sensory box transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator 2403980 6111111 PputW619_2158 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001749027.1 2402505 D 390235 CDS YP_001749028.1 170721340 6111112 complement(2404076..2404324) 1 NC_010501.1 KEGG: pfl:PFL_2569 hypothetical protein; hypothetical protein 2404324 6111112 PputW619_2159 Pseudomonas putida W619 hypothetical protein YP_001749028.1 2404076 R 390235 CDS YP_001749029.1 170721341 6111113 2404463..2406004 1 NC_010501.1 PFAM: gamma-glutamyltranspeptidase; KEGG: pmy:Pmen_3832 gamma-glutamyltransferase; gamma-glutamyltransferase 2406004 6111113 PputW619_2160 Pseudomonas putida W619 gamma-glutamyltransferase YP_001749029.1 2404463 D 390235 CDS YP_001749030.1 170721342 6111114 2406079..2406774 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_3833 transcriptional regulator, GntR family; GntR family transcriptional regulator 2406774 6111114 PputW619_2161 Pseudomonas putida W619 GntR family transcriptional regulator YP_001749030.1 2406079 D 390235 CDS YP_001749031.1 170721343 6111115 complement(2406743..2407990) 1 NC_010501.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pmy:Pmen_3834 amidohydrolase 3; amidohydrolase 3 2407990 6111115 PputW619_2162 Pseudomonas putida W619 amidohydrolase 3 YP_001749031.1 2406743 R 390235 CDS YP_001749032.1 170721344 6111116 complement(2407987..2410473) 1 NC_010501.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_3835 ABC transporter related; ABC transporter-like protein 2410473 6111116 PputW619_2163 Pseudomonas putida W619 ABC transporter-like protein YP_001749032.1 2407987 R 390235 CDS YP_001749033.1 170721345 6111117 complement(2410470..2411339) 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pmy:Pmen_3836 inner-membrane translocator; inner-membrane translocator 2411339 6111117 PputW619_2164 Pseudomonas putida W619 inner-membrane translocator YP_001749033.1 2410470 R 390235 CDS YP_001749034.1 170721346 6111118 complement(2411355..2412527) 1 NC_010501.1 PFAM: Extracellular ligand-binding receptor; KEGG: pmy:Pmen_3837 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2412527 6111118 PputW619_2165 Pseudomonas putida W619 extracellular ligand-binding receptor YP_001749034.1 2411355 R 390235 CDS YP_001749035.1 170721347 6111119 2412712..2413110 1 NC_010501.1 KEGG: pmy:Pmen_3838 hypothetical protein; hypothetical protein 2413110 6111119 PputW619_2166 Pseudomonas putida W619 hypothetical protein YP_001749035.1 2412712 D 390235 CDS YP_001749036.1 170721348 6111120 2413315..2413599 1 NC_010501.1 KEGG: pfo:Pfl_3702 hypothetical protein; hypothetical protein 2413599 6111120 PputW619_2167 Pseudomonas putida W619 hypothetical protein YP_001749036.1 2413315 D 390235 CDS YP_001749037.1 170721349 6111121 complement(2413634..2415394) 1 NC_010501.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pap:PSPA7_4152 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin 2415394 6111121 PputW619_2168 Pseudomonas putida W619 peptidase S8/S53 subtilisin kexin sedolisin YP_001749037.1 2413634 R 390235 CDS YP_001749038.1 170721350 6111122 complement(2415398..2417251) 1 NC_010501.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2245 ABC transporter, transmembrane region; ABC transporter-like protein 2417251 6111122 PputW619_2169 Pseudomonas putida W619 ABC transporter-like protein YP_001749038.1 2415398 R 390235 CDS YP_001749039.1 170721351 6111123 2417697..2418077 1 NC_010501.1 KEGG: pfo:Pfl_4134 hypothetical protein; hypothetical protein 2418077 6111123 PputW619_2170 Pseudomonas putida W619 hypothetical protein YP_001749039.1 2417697 D 390235 CDS YP_001749040.1 170721352 6111124 complement(2418102..2419226) 1 NC_010501.1 PFAM: MscS Mechanosensitive ion channel; KEGG: psb:Psyr_1822 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2419226 6111124 PputW619_2171 Pseudomonas putida W619 mechanosensitive ion channel MscS YP_001749040.1 2418102 R 390235 CDS YP_001749041.1 170721353 6111125 complement(2419426..2421558) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; KEGG: mfa:Mfla_1729 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 2421558 6111125 PputW619_2172 Pseudomonas putida W619 HAD family hydrolase YP_001749041.1 2419426 R 390235 CDS YP_001749042.1 170721354 6111126 complement(2421957..2424194) 1 NC_010501.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: psb:Psyr_3141 type II and III secretion system protein:NolW-like; general secretion pathway protein D 2424194 6111126 PputW619_2173 Pseudomonas putida W619 general secretion pathway protein D YP_001749042.1 2421957 R 390235 CDS YP_001749043.1 170721355 6111127 complement(2424191..2424700) 1 NC_010501.1 KEGG: psp:PSPPH_3055 general secretion pathway protein GspN, putative; general secretion pathway protein GspN 2424700 6111127 PputW619_2174 Pseudomonas putida W619 general secretion pathway protein GspN YP_001749043.1 2424191 R 390235 CDS YP_001749044.1 170721356 6111128 complement(2424697..2425308) 1 NC_010501.1 KEGG: psp:PSPPH_3056 general secretion pathway protein GspM, putative; general secretion pathway protein GspM 2425308 6111128 PputW619_2175 Pseudomonas putida W619 general secretion pathway protein GspM YP_001749044.1 2424697 R 390235 CDS YP_001749045.1 170721357 6111129 complement(2425292..2426332) 1 NC_010501.1 PFAM: Fimbrial assembly family protein; KEGG: pst:PSPTO_3310 general secretion pathway protein L, putative; fimbrial assembly family protein 2426332 6111129 PputW619_2176 Pseudomonas putida W619 fimbrial assembly family protein YP_001749045.1 2425292 R 390235 CDS YP_001749046.1 170721358 6111130 complement(2426329..2427042) 1 NC_010501.1 KEGG: psp:PSPPH_3058 general secretion pathway protein GspK; general secretion pathway protein GspK 2427042 6111130 PputW619_2177 Pseudomonas putida W619 general secretion pathway protein GspK YP_001749046.1 2426329 R 390235 CDS YP_001749047.1 170721359 6111131 complement(2427039..2427644) 1 NC_010501.1 KEGG: pst:PSPTO_3312 general secretion pathway protein J, putative; general secretion pathway protein J 2427644 6111131 PputW619_2178 Pseudomonas putida W619 general secretion pathway protein J YP_001749047.1 2427039 R 390235 CDS YP_001749048.1 170721360 6111132 complement(2427641..2428003) 1 NC_010501.1 KEGG: psp:PSPPH_3060 general secretion pathway protein GspI; general secretion pathway protein GspI 2428003 6111132 PputW619_2179 Pseudomonas putida W619 general secretion pathway protein GspI YP_001749048.1 2427641 R 390235 CDS YP_001749049.1 170721361 6111133 complement(2428000..2428440) 1 NC_010501.1 TIGRFAM: general secretion pathway protein H; KEGG: psb:Psyr_3148 general secretion pathway protein H; general secretion pathway protein H 2428440 6111133 PputW619_2180 Pseudomonas putida W619 general secretion pathway protein H YP_001749049.1 2428000 R 390235 CDS YP_001749050.1 170721362 6111134 complement(2428443..2428865) 1 NC_010501.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pst:PSPTO_3315 general secretion pathway protein G; general secretion pathway protein G 2428865 6111134 PputW619_2181 Pseudomonas putida W619 general secretion pathway protein G YP_001749050.1 2428443 R 390235 CDS YP_001749051.1 170721363 6111135 complement(2428876..2430075) 1 NC_010501.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: psb:Psyr_3150 type II secretion system protein; general secretion pathway protein F 2430075 6111135 PputW619_2182 Pseudomonas putida W619 general secretion pathway protein F YP_001749051.1 2428876 R 390235 CDS YP_001749052.1 170721364 6111136 complement(2430077..2431768) 1 NC_010501.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pst:PSPTO_3317 general secretion pathway protein E; general secretory pathway protein E 2431768 6111136 PputW619_2183 Pseudomonas putida W619 general secretory pathway protein E YP_001749052.1 2430077 R 390235 CDS YP_001749053.1 170721365 6111137 2432251..2432493 1 NC_010501.1 hypothetical protein 2432493 6111137 PputW619_2184 Pseudomonas putida W619 hypothetical protein YP_001749053.1 2432251 D 390235 CDS YP_001749054.1 170721366 6111138 2432570..2435224 1 NC_010501.1 PFAM: glycoside hydrolase family 3 domain protein; PA14 domain protein; KEGG: psb:Psyr_3035 glycoside hydrolase, family 3, N-terminal:glycoside hydrolase, family 3, C-terminal:glycoside hydrolase, family 3, C-terminal; beta-glucosidase 2435224 6111138 PputW619_2185 Pseudomonas putida W619 beta-glucosidase YP_001749054.1 2432570 D 390235 CDS YP_001749055.1 170721367 6111139 complement(2435233..2435877) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: psb:Psyr_3036 regulatory protein, TetR; TetR family transcriptional regulator 2435877 6111139 PputW619_2186 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749055.1 2435233 R 390235 CDS YP_001749056.1 170721368 6111140 complement(2435950..2437290) 1 NC_010501.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: pst:PSPTO_3172 hypothetical protein; multi anti extrusion protein MatE 2437290 6111140 PputW619_2187 Pseudomonas putida W619 multi anti extrusion protein MatE YP_001749056.1 2435950 R 390235 CDS YP_001749057.1 170721369 6111141 complement(2437429..2437896) 1 NC_010501.1 PFAM: DoxX family protein; KEGG: pen:PSEEN3277 hypothetical protein; DoxX family protein 2437896 6111141 PputW619_2188 Pseudomonas putida W619 DoxX family protein YP_001749057.1 2437429 R 390235 CDS YP_001749058.1 170721370 6111142 complement(2437907..2438662) 1 NC_010501.1 KEGG: pen:PSEEN3276 hypothetical protein; hypothetical protein 2438662 6111142 PputW619_2189 Pseudomonas putida W619 hypothetical protein YP_001749058.1 2437907 R 390235 CDS YP_001749059.1 170721371 6111143 complement(2438659..2439492) 1 NC_010501.1 PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3275 hypothetical protein; hypothetical protein 2439492 6111143 PputW619_2190 Pseudomonas putida W619 hypothetical protein YP_001749059.1 2438659 R 390235 CDS YP_001749060.1 170721372 6111144 complement(2439509..2439787) 1 NC_010501.1 KEGG: pen:PSEEN3274 hypothetical protein; hypothetical protein 2439787 6111144 PputW619_2191 Pseudomonas putida W619 hypothetical protein YP_001749060.1 2439509 R 390235 CDS YP_001749061.1 170721373 6111145 2439986..2440570 1 NC_010501.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2440570 6111145 PputW619_2192 Pseudomonas putida W619 RNA polymerase sigma factor YP_001749061.1 2439986 D 390235 CDS YP_001749062.1 170721374 6111146 2440560..2441201 1 NC_010501.1 PFAM: protein of unknown function DUF1109; KEGG: pen:PSEEN3271 hypothetical protein; hypothetical protein 2441201 6111146 PputW619_2193 Pseudomonas putida W619 hypothetical protein YP_001749062.1 2440560 D 390235 CDS YP_001749063.1 170721375 6111147 complement(2441239..2441820) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN3199 transcriptional regulator, TetR family; TetR family transcriptional regulator 2441820 6111147 PputW619_2194 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749063.1 2441239 R 390235 CDS YP_001749064.1 170721376 6111148 complement(2441833..2442681) 1 NC_010501.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pen:PSEEN3198 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 2442681 6111148 PputW619_2195 Pseudomonas putida W619 3-hydroxybutyryl-CoA dehydrogenase YP_001749064.1 2441833 R 390235 CDS YP_001749065.1 170721377 6111149 complement(2442695..2443879) 1 NC_010501.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2443879 6111149 PputW619_2196 Pseudomonas putida W619 beta-ketothiolase YP_001749065.1 2442695 R 390235 CDS YP_001749066.1 170721378 6111150 2444048..2445058 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3196 transcriptional regulator, AraC family; AraC family transcriptional regulator 2445058 6111150 PputW619_2197 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749066.1 2444048 D 390235 CDS YP_001749067.1 170721379 6111151 complement(2445359..2445697) 1 NC_010501.1 KEGG: pen:PSEEN3191 hypothetical protein; hypothetical protein 2445697 6111151 PputW619_2198 Pseudomonas putida W619 hypothetical protein YP_001749067.1 2445359 R 390235 CDS YP_001749068.1 170721380 6111152 complement(2445891..2446292) 1 NC_010501.1 PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN3189 hypothetical protein; hypothetical protein 2446292 6111152 PputW619_2199 Pseudomonas putida W619 hypothetical protein YP_001749068.1 2445891 R 390235 CDS YP_001749069.1 170721381 6111153 complement(2446285..2447520) 1 NC_010501.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN3188 glycolate oxidase subunit, FeS protein; glycolate oxidase iron-sulfur subunit 2447520 glcF 6111153 glcF Pseudomonas putida W619 glycolate oxidase iron-sulfur subunit YP_001749069.1 2446285 R 390235 CDS YP_001749070.1 170721382 6111154 complement(2447530..2448582) 1 NC_010501.1 PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3187 glycolate oxidase, subunit GlcE; glycolate oxidase FAD binding subunit 2448582 glcE 6111154 glcE Pseudomonas putida W619 glycolate oxidase FAD binding subunit YP_001749070.1 2447530 R 390235 CDS YP_001749071.1 170721383 6111155 complement(2448582..2450081) 1 NC_010501.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3186 glycolate oxidase, FAD-linked subunit; glycolate oxidase subunit GlcD 2450081 6111155 PputW619_2202 Pseudomonas putida W619 glycolate oxidase subunit GlcD YP_001749071.1 2448582 R 390235 CDS YP_001749072.1 170721384 6111156 2450277..2451044 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psa:PST_0430 transcriptional regulator GlcC; DNA-binding transcriptional regulator GlcC 2451044 6111156 PputW619_2203 Pseudomonas putida W619 DNA-binding transcriptional regulator GlcC YP_001749072.1 2450277 D 390235 CDS YP_001749073.1 170721385 6111157 complement(2451101..2452333) 1 NC_010501.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties; glutamate carboxypeptidase 2452333 6111157 PputW619_2204 Pseudomonas putida W619 glutamate carboxypeptidase YP_001749073.1 2451101 R 390235 CDS YP_001749074.1 170721386 6111158 complement(2452456..2452773) 1 NC_010501.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2379 hypothetical protein; hypothetical protein 2452773 6111158 PputW619_2205 Pseudomonas putida W619 hypothetical protein YP_001749074.1 2452456 R 390235 CDS YP_001749075.1 170721387 6111159 complement(2452900..2453421) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_0733 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2453421 6111159 PputW619_2206 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749075.1 2452900 R 390235 CDS YP_001749076.1 170721388 6111160 2453568..2454197 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: rle:RL1348 putative glutathione-S-transferase protein; glutathione S-transferase domain-containing protein 2454197 6111160 PputW619_2207 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001749076.1 2453568 D 390235 CDS YP_001749077.1 170721389 6111161 2454439..2455704 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bte:BTH_II1641 cytosine permease; cytosine permease 2455704 codB 6111161 codB Pseudomonas putida W619 cytosine permease YP_001749077.1 2454439 D 390235 CDS YP_001749078.1 170721390 6111162 2455701..2456918 1 NC_010501.1 PFAM: purine catabolism PurC domain protein; KEGG: bte:BTH_II1640 DNA-binding protein; PucR family transcriptional regulator 2456918 6111162 PputW619_2209 Pseudomonas putida W619 PucR family transcriptional regulator YP_001749078.1 2455701 D 390235 CDS YP_001749079.1 170721391 6111163 2456923..2458164 1 NC_010501.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: psa:PST_3570 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 2458164 6111163 PputW619_2210 Pseudomonas putida W619 N-isopropylammelide isopropylaminohydrolase YP_001749079.1 2456923 D 390235 CDS YP_001749080.1 170721392 6111164 2458263..2458997 1 NC_010501.1 KEGG: pen:PSEEN2128 hypothetical protein; hypothetical protein 2458997 6111164 PputW619_2211 Pseudomonas putida W619 hypothetical protein YP_001749080.1 2458263 D 390235 CDS YP_001749081.1 170721393 6111165 complement(2459014..2459556) 1 NC_010501.1 KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein 2459556 6111165 PputW619_2212 Pseudomonas putida W619 transcriptional factor-like protein YP_001749081.1 2459014 R 390235 CDS YP_001749082.1 170721394 6111166 complement(2459839..2461263) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2394 transcriptional regulator, GntR family; transcriptional regulator 2461263 6111166 PputW619_2213 Pseudomonas putida W619 transcriptional regulator YP_001749082.1 2459839 R 390235 CDS YP_001749083.1 170721395 6111167 2461589..2462998 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN2395 gamma-aminobutyrate permease GabP-like; amino acid permease-associated protein 2462998 6111167 PputW619_2214 Pseudomonas putida W619 amino acid permease-associated protein YP_001749083.1 2461589 D 390235 CDS YP_001749084.1 170721396 6111168 complement(2463002..2463181) 1 NC_010501.1 hypothetical protein 2463181 6111168 PputW619_2215 Pseudomonas putida W619 hypothetical protein YP_001749084.1 2463002 R 390235 CDS YP_001749085.1 170721397 6111169 2463285..2464061 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2396 trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 2464061 6111169 PputW619_2216 Pseudomonas putida W619 trans-aconitate 2-methyltransferase YP_001749085.1 2463285 D 390235 CDS YP_001749086.1 170721398 6111170 complement(2464051..2464461) 1 NC_010501.1 KEGG: pen:PSEEN2397 hypothetical protein; hypothetical protein 2464461 6111170 PputW619_2217 Pseudomonas putida W619 hypothetical protein YP_001749086.1 2464051 R 390235 CDS YP_001749087.1 170721399 6111171 complement(2464527..2465396) 1 NC_010501.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2399 transcriptional regulator, LysR family; LysR family transcriptional regulator 2465396 6111171 PputW619_2218 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749087.1 2464527 R 390235 CDS YP_001749088.1 170721400 6111172 2465637..2466953 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2400 sugar MFS transporter; major facilitator transporter 2466953 6111172 PputW619_2219 Pseudomonas putida W619 major facilitator transporter YP_001749088.1 2465637 D 390235 CDS YP_001749089.1 170721401 6111173 2466968..2468359 1 NC_010501.1 TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2401 hypothetical protein; aminophosphonate oxidoreductase 2468359 6111173 PputW619_2220 Pseudomonas putida W619 aminophosphonate oxidoreductase YP_001749089.1 2466968 D 390235 CDS YP_001749090.1 170721402 6111174 2468455..2469165 1 NC_010501.1 PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN2368 hypothetical protein; hypothetical protein 2469165 6111174 PputW619_2221 Pseudomonas putida W619 hypothetical protein YP_001749090.1 2468455 D 390235 CDS YP_001749091.1 170721403 6111175 2469302..2470246 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2369 transcriptional regulator, LysR family; LysR family transcriptional regulator 2470246 6111175 PputW619_2222 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749091.1 2469302 D 390235 CDS YP_001749092.1 170721404 6111176 2470448..2471860 1 NC_010501.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: pen:PSEEN2370 tyrosine decarboxylase; aromatic-L-amino-acid decarboxylase 2471860 6111176 PputW619_2223 Pseudomonas putida W619 aromatic-L-amino-acid decarboxylase YP_001749092.1 2470448 D 390235 CDS YP_001749093.1 170721405 6111177 complement(2471896..2473269) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN2013 major facilitator family transporter; major facilitator transporter 2473269 6111177 PputW619_2224 Pseudomonas putida W619 major facilitator transporter YP_001749093.1 2471896 R 390235 CDS YP_001749094.1 170721406 6111178 2473763..2475670 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pen:PSEEN2014 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2475670 6111178 PputW619_2225 Pseudomonas putida W619 4-hydroxyphenylpyruvate dioxygenase YP_001749094.1 2473763 D 390235 CDS YP_001749095.1 170721407 6111179 2475843..2476514 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2015 transcriptional regulator, TetR family; TetR family transcriptional regulator 2476514 6111179 PputW619_2226 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749095.1 2475843 D 390235 CDS YP_001749096.1 170721408 6111180 complement(2476522..2477529) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2335 transcriptional regulator, AraC family; AraC family transcriptional regulator 2477529 6111180 PputW619_2227 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749096.1 2476522 R 390235 CDS YP_001749097.1 170721409 6111181 2477669..2478148 1 NC_010501.1 KEGG: pen:PSEEN2336 hypothetical protein; hypothetical protein 2478148 6111181 PputW619_2228 Pseudomonas putida W619 hypothetical protein YP_001749097.1 2477669 D 390235 CDS YP_001749098.1 170721410 6111182 2478202..2478414 1 NC_010501.1 KEGG: pen:PSEEN2759 hypothetical protein; hypothetical protein 2478414 6111182 PputW619_2229 Pseudomonas putida W619 hypothetical protein YP_001749098.1 2478202 D 390235 CDS YP_001749099.1 170721411 6111183 2478536..2479030 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2309 hypothetical protein; N-acetyltransferase GCN5 2479030 6111183 PputW619_2230 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749099.1 2478536 D 390235 CDS YP_001749100.1 170721412 6111184 2479167..2481266 1 NC_010501.1 KEGG: pen:PSEEN2310 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2481266 6111184 PputW619_2231 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001749100.1 2479167 D 390235 CDS YP_001749101.1 170721413 6111185 complement(2481293..2482117) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: pfl:PFL_5394 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2482117 6111185 PputW619_2232 Pseudomonas putida W619 aldo/keto reductase YP_001749101.1 2481293 R 390235 CDS YP_001749102.1 170721414 6111186 2482346..2483224 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN2407 hypothetical protein; hypothetical protein 2483224 6111186 PputW619_2233 Pseudomonas putida W619 hypothetical protein YP_001749102.1 2482346 D 390235 CDS YP_001749103.1 170721415 6111187 complement(2483243..2484145) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1962 transcriptional regulator, LysR family; LysR family transcriptional regulator 2484145 6111187 PputW619_2234 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749103.1 2483243 R 390235 CDS YP_001749104.1 170721416 6111188 2484527..2486785 1 NC_010501.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pen:PSEEN2372 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 2486785 6111188 PputW619_2235 Pseudomonas putida W619 catalase/peroxidase HPI YP_001749104.1 2484527 D 390235 CDS YP_001749105.1 170721417 6111189 2487024..2488235 1 NC_010501.1 PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; creatinase 2488235 6111189 PputW619_2236 Pseudomonas putida W619 creatinase YP_001749105.1 2487024 D 390235 CDS YP_001749106.1 170721418 6111190 2488350..2489684 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1; general substrate transporter 2489684 6111190 PputW619_2237 Pseudomonas putida W619 general substrate transporter YP_001749106.1 2488350 D 390235 CDS YP_001749107.1 170721419 6111191 complement(2489689..2490681) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pmy:Pmen_0490 transcriptional regulator, AraC family; AraC family transcriptional regulator 2490681 6111191 PputW619_2238 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749107.1 2489689 R 390235 CDS YP_001749108.1 170721420 6111192 2490838..2492166 1 NC_010501.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2492166 pssA 6111192 pssA Pseudomonas putida W619 phosphatidylserine synthase YP_001749108.1 2490838 D 390235 CDS YP_001749109.1 170721421 6111193 2492249..2493415 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfo:Pfl_2170 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 2493415 6111193 PputW619_2240 Pseudomonas putida W619 diguanylate cyclase YP_001749109.1 2492249 D 390235 CDS YP_001749110.1 170721422 6111194 complement(2493519..2494892) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2055 decarboxylase; hypothetical protein 2494892 6111194 PputW619_2241 Pseudomonas putida W619 hypothetical protein YP_001749110.1 2493519 R 390235 CDS YP_001749111.1 170721423 6111195 complement(2494943..2496004) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A1977 conserved hypothetical protein 698; hypothetical protein 2496004 6111195 PputW619_2242 Pseudomonas putida W619 hypothetical protein YP_001749111.1 2494943 R 390235 CDS YP_001749112.1 170721424 6111196 2496115..2496984 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1978 transcriptional regulator, LysR family; LysR family transcriptional regulator 2496984 6111196 PputW619_2243 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749112.1 2496115 D 390235 CDS YP_001749113.1 170721425 6111197 complement(2497110..2497400) 1 NC_010501.1 KEGG: ncr:NCU07949.1 hypothetical protein; hypothetical protein 2497400 6111197 PputW619_2244 Pseudomonas putida W619 hypothetical protein YP_001749113.1 2497110 R 390235 CDS YP_001749114.1 170721426 6111198 complement(2497581..2498780) 1 NC_010501.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2498780 6111198 PputW619_2245 Pseudomonas putida W619 nicotinate phosphoribosyltransferase YP_001749114.1 2497581 R 390235 CDS YP_001749115.1 170721427 6111199 complement(2498777..2499427) 1 NC_010501.1 KEGG: pen:PSEEN2059 nicotinamidase; nicotinamidase 2499427 6111199 PputW619_2246 Pseudomonas putida W619 nicotinamidase YP_001749115.1 2498777 R 390235 CDS YP_001749116.1 170721428 6111200 2499566..2500270 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2060 hypothetical protein; NUDIX hydrolase 2500270 6111200 PputW619_2247 Pseudomonas putida W619 NUDIX hydrolase YP_001749116.1 2499566 D 390235 CDS YP_001749117.1 170721429 6111201 complement(2500509..2501921) 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3342 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease 2501921 6111201 PputW619_2248 Pseudomonas putida W619 cytosine/purines uracil thiamine allantoin permease YP_001749117.1 2500509 R 390235 CDS YP_001749118.1 170721430 6111202 complement(2502209..2502661) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3341 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2502661 6111202 PputW619_2249 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001749118.1 2502209 R 390235 CDS YP_001749119.1 170721431 6111203 2502771..2503385 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3340 transporter, LysE family; lysine exporter protein LysE/YggA 2503385 6111203 PputW619_2250 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749119.1 2502771 D 390235 CDS YP_001749120.1 170721432 6111204 2503503..2505668 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2026 sensor histidine kinase/response regulator hybrid; PAS/PAC sensor hybrid histidine kinase 2505668 6111204 PputW619_2251 Pseudomonas putida W619 PAS/PAC sensor hybrid histidine kinase YP_001749120.1 2503503 D 390235 CDS YP_001749121.1 170721433 6111205 complement(2505675..2507873) 1 NC_010501.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2027 sensor histidine kinase/response regulator hybrid; GAF sensor hybrid histidine kinase 2507873 6111205 PputW619_2252 Pseudomonas putida W619 GAF sensor hybrid histidine kinase YP_001749121.1 2505675 R 390235 CDS YP_001749122.1 170721434 6111206 complement(2507964..2508527) 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2028 hydrolase, MutT/NUDIX family; NUDIX hydrolase 2508527 6111206 PputW619_2253 Pseudomonas putida W619 NUDIX hydrolase YP_001749122.1 2507964 R 390235 CDS YP_001749123.1 170721435 6111207 complement(2508530..2509294) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2029 transcriptional regulator, GntR family; GntR family transcriptional regulator 2509294 6111207 PputW619_2254 Pseudomonas putida W619 GntR family transcriptional regulator YP_001749123.1 2508530 R 390235 CDS YP_001749124.1 170721436 6111208 complement(2509383..2509772) 1 NC_010501.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN2030 gamma-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2509772 6111208 PputW619_2255 Pseudomonas putida W619 carboxymuconolactone decarboxylase YP_001749124.1 2509383 R 390235 CDS YP_001749125.1 170721437 6111209 complement(2509910..2510395) 1 NC_010501.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2031 oxidoreductase; flavin reductase domain-containing protein 2510395 6111209 PputW619_2256 Pseudomonas putida W619 flavin reductase domain-containing protein YP_001749125.1 2509910 R 390235 CDS YP_001749126.1 170721438 6111210 complement(2510409..2511890) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2032 aldehyde dehydrogenase; aldehyde dehydrogenase 2511890 6111210 PputW619_2257 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749126.1 2510409 R 390235 CDS YP_001749127.1 170721439 6111211 complement(2511887..2512720) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: pen:PSEEN2033 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2512720 6111211 PputW619_2258 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001749127.1 2511887 R 390235 CDS YP_001749128.1 170721440 6111212 complement(2512789..2513385) 1 NC_010501.1 PFAM: protein of unknown function DUF1185; KEGG: pen:PSEEN2034 hypothetical protein; hypothetical protein 2513385 6111212 PputW619_2259 Pseudomonas putida W619 hypothetical protein YP_001749128.1 2512789 R 390235 CDS YP_001749129.1 170721441 6111213 complement(2513631..2514674) 1 NC_010501.1 PFAM: luciferase family protein; KEGG: pen:PSEEN2035 monooxygenase, bacterial luciferase family; luciferase family protein 2514674 6111213 PputW619_2260 Pseudomonas putida W619 luciferase family protein YP_001749129.1 2513631 R 390235 CDS YP_001749130.1 170721442 6111214 complement(2514741..2515226) 1 NC_010501.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2036 oxidoreductase; flavin reductase domain-containing protein 2515226 6111214 PputW619_2261 Pseudomonas putida W619 flavin reductase domain-containing protein YP_001749130.1 2514741 R 390235 CDS YP_001749131.1 170721443 6111215 2515543..2516946 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN2038 permease, cytosine/purines, uracil, thiamine, allantoin permease family; cytosine/purines uracil thiamine allantoin permease 2516946 6111215 PputW619_2262 Pseudomonas putida W619 cytosine/purines uracil thiamine allantoin permease YP_001749131.1 2515543 D 390235 CDS YP_001749132.1 170721444 6111216 complement(2517041..2518666) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2039 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2518666 6111216 PputW619_2263 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749132.1 2517041 R 390235 CDS YP_001749133.1 170721445 6111217 complement(2518891..2520090) 1 NC_010501.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2119 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2520090 6111217 PputW619_2264 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001749133.1 2518891 R 390235 CDS YP_001749134.1 170721446 6111218 complement(2520458..2523016) 1 NC_010501.1 hypothetical protein 2523016 6111218 PputW619_2265 Pseudomonas putida W619 hypothetical protein YP_001749134.1 2520458 R 390235 CDS YP_001749135.1 170721447 6111219 complement(2522997..2523944) 1 NC_010501.1 KEGG: bur:Bcep18194_C6544 hypothetical protein; hypothetical protein 2523944 6111219 PputW619_2266 Pseudomonas putida W619 hypothetical protein YP_001749135.1 2522997 R 390235 CDS YP_001749136.1 170721448 6111220 complement(2524038..2525918) 1 NC_010501.1 PFAM: Integrase catalytic region; KEGG: mms:mma_0807 hypothetical protein; integrase catalytic region 2525918 6111220 PputW619_2267 Pseudomonas putida W619 integrase catalytic region YP_001749136.1 2524038 R 390235 CDS YP_001749137.1 170721449 6111221 complement(2525915..2526475) 1 NC_010501.1 hypothetical protein 2526475 6111221 PputW619_2268 Pseudomonas putida W619 hypothetical protein YP_001749137.1 2525915 R 390235 CDS YP_001749138.1 170721450 6111222 complement(2526983..2527234) 1 NC_010501.1 hypothetical protein 2527234 6111222 PputW619_2269 Pseudomonas putida W619 hypothetical protein YP_001749138.1 2526983 R 390235 CDS YP_001749139.1 170721451 6111223 complement(2527414..2528115) 1 NC_010501.1 hypothetical protein 2528115 6111223 PputW619_2270 Pseudomonas putida W619 hypothetical protein YP_001749139.1 2527414 R 390235 CDS YP_001749140.1 170721452 6111224 2529131..2530279 1 NC_010501.1 hypothetical protein 2530279 6111224 PputW619_2271 Pseudomonas putida W619 hypothetical protein YP_001749140.1 2529131 D 390235 CDS YP_001749141.1 170721453 6111225 2531469..2531789 1 NC_010501.1 KEGG: pap:PSPA7_3053 hypothetical protein; hypothetical protein 2531789 6111225 PputW619_2272 Pseudomonas putida W619 hypothetical protein YP_001749141.1 2531469 D 390235 CDS YP_001749142.1 170721454 6111226 2531851..2532039 1 NC_010501.1 KEGG: pfl:PFL_0750 hypothetical protein; hypothetical protein 2532039 6111226 PputW619_2273 Pseudomonas putida W619 hypothetical protein YP_001749142.1 2531851 D 390235 CDS YP_001749143.1 170721455 6111227 complement(2532470..2532862) 1 NC_010501.1 KEGG: eba:ebA2473 hypothetical gene; hypothetical protein 2532862 6111227 PputW619_2274 Pseudomonas putida W619 hypothetical protein YP_001749143.1 2532470 R 390235 CDS YP_001749144.1 170721456 6111228 complement(2533233..2534207) 1 NC_010501.1 KEGG: pap:PSPA7_3057 TnpT protein; TnpT protein 2534207 6111228 PputW619_2275 Pseudomonas putida W619 TnpT protein YP_001749144.1 2533233 R 390235 CDS YP_001749145.1 170721457 6111229 2534353..2535288 1 NC_010501.1 PFAM: integrase family protein; KEGG: pmy:Pmen_2249 phage integrase family protein; integrase family protein 2535288 6111229 PputW619_2276 Pseudomonas putida W619 integrase family protein YP_001749145.1 2534353 D 390235 CDS YP_001749146.1 170721458 6111230 2535693..2537855 1 NC_010501.1 KEGG: bte:BTH_I0097 hypothetical protein; hypothetical protein 2537855 6111230 PputW619_2277 Pseudomonas putida W619 hypothetical protein YP_001749146.1 2535693 D 390235 CDS YP_001749147.1 170721459 6111231 2537852..2538532 1 NC_010501.1 KEGG: bte:BTH_I0098 hypothetical protein; hypothetical protein 2538532 6111231 PputW619_2278 Pseudomonas putida W619 hypothetical protein YP_001749147.1 2537852 D 390235 CDS YP_001749148.1 170721460 6111232 2539077..2541032 1 NC_010501.1 KEGG: rxy:Rxyl_1791 adenine-specific DNA methylase containing a Zn-ribbon-like protein; adenine-specific DNA methylase 2541032 6111232 PputW619_2279 Pseudomonas putida W619 adenine-specific DNA methylase YP_001749148.1 2539077 D 390235 CDS YP_001749149.1 170721461 6111233 2541063..2545274 1 NC_010501.1 SMART: AAA ATPase; KEGG: rxy:Rxyl_1790 superfamily I DNA and RNA helicases and helicase subunits-like protein; ATPase AAA 2545274 6111233 PputW619_2280 Pseudomonas putida W619 ATPase AAA YP_001749149.1 2541063 D 390235 CDS YP_001749150.1 170721462 6111234 complement(2545337..2546278) 1 NC_010501.1 KEGG: sao:SAOUHSC_01931 hypothetical protein; hypothetical protein 2546278 6111234 PputW619_2281 Pseudomonas putida W619 hypothetical protein YP_001749150.1 2545337 R 390235 CDS YP_001749151.1 170721463 6111235 2546783..2547703 1 NC_010501.1 KEGG: psb:Psyr_5116 hypothetical protein; hypothetical protein 2547703 6111235 PputW619_2282 Pseudomonas putida W619 hypothetical protein YP_001749151.1 2546783 D 390235 CDS YP_001749152.1 170721464 6111236 2547707..2551369 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: psb:Psyr_5115 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase 2551369 6111236 PputW619_2283 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001749152.1 2547707 D 390235 CDS YP_001749153.1 170721465 6111237 complement(2551957..2553918) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: psp:PSPPH_2856 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2553918 6111237 PputW619_2284 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749153.1 2551957 R 390235 CDS YP_001749154.1 170721466 6111238 complement(2555087..2556478) 1 NC_010501.1 PFAM: aminotransferase class-III; KEGG: atc:AGR_L_242 hypothetical protein; hypothetical protein 2556478 6111238 PputW619_2285 Pseudomonas putida W619 hypothetical protein YP_001749154.1 2555087 R 390235 CDS YP_001749155.1 170721467 6111239 complement(2556500..2557972) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: atu:Atu4762 succinate semialdehyde dehydrogenase; aldehyde dehydrogenase 2557972 6111239 PputW619_2286 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749155.1 2556500 R 390235 CDS YP_001749156.1 170721468 6111240 complement(2558097..2558687) 1 NC_010501.1 PFAM: protein of unknown function DUF1185; KEGG: bam:Bamb_4326 protein of unknown function DUF1185; hypothetical protein 2558687 6111240 PputW619_2287 Pseudomonas putida W619 hypothetical protein YP_001749156.1 2558097 R 390235 CDS YP_001749157.1 170721469 6111241 2558830..2560623 1 NC_010501.1 PFAM: GAF domain protein; KEGG: bam:Bamb_4325 hypothetical protein; PucR family transcriptional regulator 2560623 6111241 PputW619_2288 Pseudomonas putida W619 PucR family transcriptional regulator YP_001749157.1 2558830 D 390235 CDS YP_001749158.1 170721470 6111242 2560783..2561754 1 NC_010501.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bam:Bamb_4324 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 2561754 6111242 PputW619_2289 Pseudomonas putida W619 flavin reductase domain-containing protein YP_001749158.1 2560783 D 390235 CDS YP_001749159.1 170721471 6111243 2561780..2563291 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4323 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 2563291 6111243 PputW619_2290 Pseudomonas putida W619 betaine-aldehyde dehydrogenase YP_001749159.1 2561780 D 390235 CDS YP_001749160.1 170721472 6111244 2563331..2564395 1 NC_010501.1 PFAM: luciferase family protein; KEGG: bam:Bamb_4322 luciferase family protein; luciferase family protein 2564395 6111244 PputW619_2291 Pseudomonas putida W619 luciferase family protein YP_001749160.1 2563331 D 390235 CDS YP_001749161.1 170721473 6111245 2564414..2565241 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4321 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2565241 6111245 PputW619_2292 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001749161.1 2564414 D 390235 CDS YP_001749162.1 170721474 6111246 2565475..2566653 1 NC_010501.1 KEGG: bam:Bamb_4319 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2566653 6111246 PputW619_2293 Pseudomonas putida W619 glycine betaine/L-proline ABC transporter ATPase YP_001749162.1 2565475 D 390235 CDS YP_001749163.1 170721475 6111247 2566646..2567560 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline; binding-protein-dependent transport system inner membrane protein 2567560 6111247 PputW619_2294 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001749163.1 2566646 D 390235 CDS YP_001749164.1 170721476 6111248 2567636..2568649 1 NC_010501.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2568649 proX 6111248 proX Pseudomonas putida W619 glycine betaine transporter periplasmic subunit YP_001749164.1 2567636 D 390235 CDS YP_001749165.1 170721477 6111249 2568711..2569082 1 NC_010501.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_2568 carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 2569082 6111249 PputW619_2296 Pseudomonas putida W619 4-carboxymuconolactone decarboxylase YP_001749165.1 2568711 D 390235 CDS YP_001749166.1 170721478 6111250 2569180..2570199 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: rso:RS03071 putative oxidoreductase protein; aldo/keto reductase 2570199 6111250 PputW619_2297 Pseudomonas putida W619 aldo/keto reductase YP_001749166.1 2569180 D 390235 CDS YP_001749167.1 170721479 6111251 2570651..2571052 1 NC_010501.1 PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA; LrgA family protein 2571052 6111251 PputW619_2298 Pseudomonas putida W619 LrgA family protein YP_001749167.1 2570651 D 390235 CDS YP_001749168.1 170721480 6111252 2571184..2571771 1 NC_010501.1 PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein; LrgB family protein 2571771 6111252 PputW619_2299 Pseudomonas putida W619 LrgB family protein YP_001749168.1 2571184 D 390235 CDS YP_001749169.1 170721481 6111253 complement(2571786..2573030) 1 NC_010501.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: psa:PST_0550 malic enzyme; malate dehydrogenase 2573030 6111253 PputW619_2300 Pseudomonas putida W619 malate dehydrogenase YP_001749169.1 2571786 R 390235 CDS YP_001749170.1 170721482 6111254 complement(2573092..2574777) 1 NC_010501.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pau:PA14_63080 L-lactate permease; L-lactate transport 2574777 6111254 PputW619_2301 Pseudomonas putida W619 L-lactate transport YP_001749170.1 2573092 R 390235 CDS YP_001749171.1 170721483 6111255 complement(2574994..2577171) 1 NC_010501.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 2577171 6111255 PputW619_2302 Pseudomonas putida W619 malate synthase G YP_001749171.1 2574994 R 390235 CDS YP_001749172.1 170721484 6111256 complement(2577217..2577615) 1 NC_010501.1 PFAM: protein of unknown function DUF336; KEGG: pmy:Pmen_0200 protein of unknown function DUF336; hypothetical protein 2577615 6111256 PputW619_2303 Pseudomonas putida W619 hypothetical protein YP_001749172.1 2577217 R 390235 CDS YP_001749173.1 170721485 6111257 complement(2577814..2579031) 1 NC_010501.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pmy:Pmen_0201 protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit 2579031 glcF 6111257 glcF Pseudomonas putida W619 glycolate oxidase iron-sulfur subunit YP_001749173.1 2577814 R 390235 CDS YP_001749174.1 170721486 6111258 complement(2579041..2580093) 1 NC_010501.1 PFAM: FAD linked oxidase domain protein; KEGG: pmy:Pmen_0202 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2580093 6111258 PputW619_2305 Pseudomonas putida W619 FAD linked oxidase domain-containing protein YP_001749174.1 2579041 R 390235 CDS YP_001749175.1 170721487 6111259 complement(2580093..2581592) 1 NC_010501.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: psa:PST_0431 glycolate oxidase, subunit GlcD; glycolate oxidase subunit GlcD 2581592 6111259 PputW619_2306 Pseudomonas putida W619 glycolate oxidase subunit GlcD YP_001749175.1 2580093 R 390235 CDS YP_001749176.1 170721488 6111260 2581852..2582631 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psa:PST_0430 transcriptional regulator GlcC; DNA-binding transcriptional regulator GlcC 2582631 6111260 PputW619_2307 Pseudomonas putida W619 DNA-binding transcriptional regulator GlcC YP_001749176.1 2581852 D 390235 CDS YP_001749177.1 170721489 6111261 complement(2582680..2584101) 1 NC_010501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2584101 6111261 PputW619_2308 Pseudomonas putida W619 pyruvate kinase YP_001749177.1 2582680 R 390235 CDS YP_001749178.1 170721490 6111262 complement(2584091..2585371) 1 NC_010501.1 PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase 2585371 6111262 PputW619_2309 Pseudomonas putida W619 hydroxypyruvate reductase YP_001749178.1 2584091 R 390235 CDS YP_001749179.1 170721491 6111263 complement(2585553..2586437) 1 NC_010501.1 KEGG: pap:PSPA7_3831 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 2586437 6111263 PputW619_2310 Pseudomonas putida W619 2-hydroxy-3-oxopropionate reductase YP_001749179.1 2585553 R 390235 CDS YP_001749180.1 170721492 6111264 complement(2586514..2587284) 1 NC_010501.1 KEGG: pfo:Pfl_1597 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 2587284 6111264 PputW619_2311 Pseudomonas putida W619 hydroxypyruvate isomerase YP_001749180.1 2586514 R 390235 CDS YP_001749181.1 170721493 6111265 complement(2587298..2589073) 1 NC_010501.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 2589073 6111265 PputW619_2312 Pseudomonas putida W619 glyoxylate carboligase YP_001749181.1 2587298 R 390235 CDS YP_001749182.1 170721494 6111266 2589186..2590091 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_3113 transcriptional regulator, LysR family; LysR family transcriptional regulator 2590091 6111266 PputW619_2313 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749182.1 2589186 D 390235 CDS YP_001749183.1 170721495 6111267 2590135..2591040 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0678 transcriptional regulator, LysR family; LysR family transcriptional regulator 2591040 6111267 PputW619_2314 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749183.1 2590135 D 390235 CDS YP_001749184.1 170721496 6111268 complement(2591057..2592127) 1 NC_010501.1 KEGG: bxe:Bxe_B0677 hypothetical protein; hypothetical protein 2592127 6111268 PputW619_2315 Pseudomonas putida W619 hypothetical protein YP_001749184.1 2591057 R 390235 CDS YP_001749185.1 170721497 6111269 2592491..2593906 1 NC_010501.1 KEGG: azc:AZC_1360 sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2593906 6111269 PputW619_2316 Pseudomonas putida W619 multi-sensor signal transduction histidine kinase YP_001749185.1 2592491 D 390235 CDS YP_001749186.1 170721498 6111270 2593903..2594532 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_2459 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2594532 6111270 PputW619_2317 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001749186.1 2593903 D 390235 CDS YP_001749187.1 170721499 6111271 2594614..2594991 1 NC_010501.1 PFAM: response regulator receiver; KEGG: rpb:RPB_0182 response regulator receiver domain protein; response regulator receiver protein 2594991 6111271 PputW619_2318 Pseudomonas putida W619 response regulator receiver protein YP_001749187.1 2594614 D 390235 CDS YP_001749188.1 170721500 6111272 2595152..2596792 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_1418 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2596792 6111272 PputW619_2319 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749188.1 2595152 D 390235 CDS YP_001749189.1 170721501 6111273 2596797..2597903 1 NC_010501.1 KEGG: dar:Daro_3508 PAS:GGDEF; putative diguanylate cyclase 2597903 6111273 PputW619_2320 Pseudomonas putida W619 putative diguanylate cyclase YP_001749189.1 2596797 D 390235 CDS YP_001749190.1 170721502 6111274 complement(2597880..2600846) 1 NC_010501.1 PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5337 transposase; transposase Tn3 family protein 2600846 6111274 PputW619_2321 Pseudomonas putida W619 transposase Tn3 family protein YP_001749190.1 2597880 R 390235 CDS YP_001749191.1 170721503 6111275 complement(2600850..2601410) 1 NC_010501.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: maq:Maqu_3982 resolvase, N-terminal domain; resolvase domain-containing protein 2601410 6111275 PputW619_2322 Pseudomonas putida W619 resolvase domain-containing protein YP_001749191.1 2600850 R 390235 CDS YP_001749192.1 170721504 6111276 complement(2601675..2602109) 1 NC_010501.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_C1217 transcriptional regulator, MerR family; putative transcriptional regulator MerR 2602109 6111276 PputW619_2323 Pseudomonas putida W619 putative transcriptional regulator MerR YP_001749192.1 2601675 R 390235 CDS YP_001749193.1 170721505 6111277 2602202..2602747 1 NC_010501.1 KEGG: mms:mma_1753 organomercurial lyase; organomercurial lyase 2602747 6111277 PputW619_2324 Pseudomonas putida W619 organomercurial lyase YP_001749193.1 2602202 D 390235 CDS YP_001749194.1 170721506 6111278 complement(2602829..2603236) 1 NC_010501.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator 2603236 6111278 PputW619_2325 Pseudomonas putida W619 MerR family transcriptional regulator YP_001749194.1 2602829 R 390235 CDS YP_001749195.1 170721507 6111279 2603332..2604228 1 NC_010501.1 KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family; CDF family heavy metal/H(+) antiporter 2604228 6111279 PputW619_2326 Pseudomonas putida W619 CDF family heavy metal/H(+) antiporter YP_001749195.1 2603332 D 390235 CDS YP_001749196.1 170721508 6111280 2604232..2604744 1 NC_010501.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2604744 6111280 PputW619_2327 Pseudomonas putida W619 lipoprotein signal peptidase YP_001749196.1 2604232 D 390235 CDS YP_001749197.1 170721509 6111281 2604766..2606055 1 NC_010501.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: ilo:IL0633.1 Il-IS_2, transposase; transposase IS204/IS1001/IS1096/IS1165 family protein 2606055 6111281 PputW619_2328 Pseudomonas putida W619 transposase IS204/IS1001/IS1096/IS1165 family protein YP_001749197.1 2604766 D 390235 CDS YP_001749198.1 170721510 6111282 complement(2606340..2606672) 1 NC_010501.1 PFAM: small multidrug resistance protein; KEGG: rca:Rcas_0172 small multidrug resistance protein; small multidrug resistance protein 2606672 6111282 PputW619_2329 Pseudomonas putida W619 small multidrug resistance protein YP_001749198.1 2606340 R 390235 CDS YP_001749199.1 170721511 6111283 complement(2606725..2607117) 1 NC_010501.1 PFAM: small multidrug resistance protein; KEGG: gsu:GSU0708 multidrug resistance protein; small multidrug resistance protein 2607117 6111283 PputW619_2330 Pseudomonas putida W619 small multidrug resistance protein YP_001749199.1 2606725 R 390235 CDS YP_001749200.1 170721512 6111284 complement(2607196..2607597) 1 NC_010501.1 PFAM: regulatory protein ArsR; KEGG: hau:Haur_3282 transcriptional regulator, TrmB; ArsR family transcriptional regulator 2607597 6111284 PputW619_2331 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001749200.1 2607196 R 390235 CDS YP_001749201.1 170721513 6111285 2607662..2608345 1 NC_010501.1 PFAM: Resolvase domain; KEGG: ppd:Ppro_3694 resolvase, N-terminal domain; resolvase domain-containing protein 2608345 6111285 PputW619_2332 Pseudomonas putida W619 resolvase domain-containing protein YP_001749201.1 2607662 D 390235 CDS YP_001749202.1 170721514 6111286 2608490..2608786 1 NC_010501.1 PFAM: regulatory protein LysR; KEGG: mpt:Mpe_A2330 putative transcription regulator protein; LysR family transcriptional regulator 2608786 6111286 PputW619_2333 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749202.1 2608490 D 390235 CDS YP_001749203.1 170721515 6111287 complement(2608968..2609390) 1 NC_010501.1 KEGG: bvi:Bcep1808_7197 integrase, catalytic region; integrase, catalytic region 2609390 6111287 PputW619_2334 Pseudomonas putida W619 integrase, catalytic region YP_001749203.1 2608968 R 390235 CDS YP_001749204.1 170721516 6111288 complement(2609567..2610556) 1 NC_010501.1 PFAM: EAL domain protein; KEGG: rme:Rmet_6186 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase 2610556 6111288 PputW619_2335 Pseudomonas putida W619 diguanylate phosphodiesterase YP_001749204.1 2609567 R 390235 CDS YP_001749205.1 170721517 6111289 complement(2610553..2610789) 1 NC_010501.1 PFAM: MerE family protein; KEGG: rme:Rmet_6185 MerE; putative mercury resistance protein 2610789 6111289 PputW619_2336 Pseudomonas putida W619 putative mercury resistance protein YP_001749205.1 2610553 R 390235 CDS YP_001749206.1 170721518 6111290 complement(2610786..2611151) 1 NC_010501.1 TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: pap:PSPA7_0105 mercuric resistence transcriptional repressor protein MerD; transcriptional regulator MerD 2611151 6111290 PputW619_2337 Pseudomonas putida W619 transcriptional regulator MerD YP_001749206.1 2610786 R 390235 CDS YP_001749207.1 170721519 6111291 complement(2611169..2612854) 1 NC_010501.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6183 mercuric reductase MerA; putative mercuric reductase 2612854 6111291 PputW619_2338 Pseudomonas putida W619 putative mercuric reductase YP_001749207.1 2611169 R 390235 CDS YP_001749208.1 170721520 6111292 complement(2612926..2613201) 1 NC_010501.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6173 mercuric transport protein periplasmic component; mercuric transport protein periplasmic protein 2613201 6111292 PputW619_2339 Pseudomonas putida W619 mercuric transport protein periplasmic protein YP_001749208.1 2612926 R 390235 CDS YP_001749209.1 170721521 6111293 complement(2613214..2613564) 1 NC_010501.1 PFAM: Mercuric transport protein MerT; KEGG: reu:Reut_D6497 mercuric transport protein MerT; putative mercuric transport protein 2613564 6111293 PputW619_2340 Pseudomonas putida W619 putative mercuric transport protein YP_001749209.1 2613214 R 390235 CDS YP_001749210.1 170721522 6111294 2613636..2614070 1 NC_010501.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_6344 transcriptional regulator, MerR family; putative transcriptional regulator MerR 2614070 6111294 PputW619_2341 Pseudomonas putida W619 putative transcriptional regulator MerR YP_001749210.1 2613636 D 390235 CDS YP_001749211.1 170721523 6111295 2614261..2615391 1 NC_010501.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: eba:ebA163 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 2615391 6111295 PputW619_2342 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001749211.1 2614261 D 390235 CDS YP_001749212.1 170721524 6111296 2615689..2616264 1 NC_010501.1 KEGG: fjo:Fjoh_3056 UBA/ThiF-type NAD/FAD binding protein; UBA/ThiF-type NAD/FAD binding protein 2616264 6111296 PputW619_2343 Pseudomonas putida W619 UBA/ThiF-type NAD/FAD binding protein YP_001749212.1 2615689 D 390235 CDS YP_001749213.1 170721525 6111297 2616470..2617240 1 NC_010501.1 KEGG: pna:Pnap_4928 hypothetical protein; hypothetical protein 2617240 6111297 PputW619_2344 Pseudomonas putida W619 hypothetical protein YP_001749213.1 2616470 D 390235 CDS YP_001749214.1 170721526 6111298 complement(2617310..2617672) 1 NC_010501.1 KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 2617672 6111298 PputW619_2345 Pseudomonas putida W619 hypothetical protein YP_001749214.1 2617310 R 390235 CDS YP_001749215.1 170721527 6111299 2618253..2618633 1 NC_010501.1 KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA 2618633 6111299 PputW619_2346 Pseudomonas putida W619 ISPs1, transposase OrfA YP_001749215.1 2618253 D 390235 CDS YP_001749216.1 170721528 6111300 2618669..2619109 1 NC_010501.1 PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein 2619109 6111300 PputW619_2347 Pseudomonas putida W619 transposase IS4 family protein YP_001749216.1 2618669 D 390235 CDS YP_001749217.1 170721529 6111301 complement(2619179..2619937) 1 NC_010501.1 PFAM: Silent information regulator protein Sir2; KEGG: psp:PSPPH_4322 NAD-dependent deacetylase 4 (regulatory protein SIR2homolog 4); silent information regulator protein Sir2 2619937 6111301 PputW619_2348 Pseudomonas putida W619 silent information regulator protein Sir2 YP_001749217.1 2619179 R 390235 CDS YP_001749218.1 170721530 6111302 complement(2620129..2620524) 1 NC_010501.1 KEGG: pst:PSPTO_0585 hypothetical protein; hypothetical protein 2620524 6111302 PputW619_2349 Pseudomonas putida W619 hypothetical protein YP_001749218.1 2620129 R 390235 CDS YP_001749219.1 170721531 6111303 2620733..2621008 1 NC_010501.1 PFAM: helix-turn-helix domain protein; KEGG: psp:PSPPH_2800 transcriptional regulator, PbsX family; helix-turn-helix domain-containing protein 2621008 6111303 PputW619_2350 Pseudomonas putida W619 helix-turn-helix domain-containing protein YP_001749219.1 2620733 D 390235 CDS YP_001749220.1 170721532 6111304 complement(2621363..2621803) 1 NC_010501.1 KEGG: eba:ebA2473 hypothetical gene; hypothetical protein 2621803 6111304 PputW619_2351 Pseudomonas putida W619 hypothetical protein YP_001749220.1 2621363 R 390235 CDS YP_001749221.1 170721533 6111305 complement(2622060..2622377) 1 NC_010501.1 KEGG: asa:ASA_P4G008 hypothetical protein; hypothetical protein 2622377 6111305 PputW619_2352 Pseudomonas putida W619 hypothetical protein YP_001749221.1 2622060 R 390235 CDS YP_001749222.1 170721534 6111306 2622844..2623002 1 NC_010501.1 KEGG: pst:PSPTO_5590 ISPsy5, Orf1; hypothetical protein 2623002 6111306 PputW619_2353 Pseudomonas putida W619 hypothetical protein YP_001749222.1 2622844 D 390235 CDS YP_001749223.1 170721535 6111307 2623604..2624458 1 NC_010501.1 KEGG: xau:Xaut_3730 hypothetical protein; hypothetical protein 2624458 6111307 PputW619_2354 Pseudomonas putida W619 hypothetical protein YP_001749223.1 2623604 D 390235 CDS YP_001749224.1 170721536 6111308 2624474..2627107 1 NC_010501.1 KEGG: swi:Swit_1380 tetratricopeptide TPR_4; hypothetical protein 2627107 6111308 PputW619_2355 Pseudomonas putida W619 hypothetical protein YP_001749224.1 2624474 D 390235 CDS YP_001749225.1 170721537 6111309 complement(2627309..2628631) 1 NC_010501.1 KEGG: bam:Bamb_3947 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein 2628631 6111309 PputW619_2356 Pseudomonas putida W619 hypothetical protein YP_001749225.1 2627309 R 390235 CDS YP_001749226.1 170721538 6111310 complement(2628666..2629448) 1 NC_010501.1 KEGG: bte:BTH_II1813 hypothetical protein; hypothetical protein 2629448 6111310 PputW619_2357 Pseudomonas putida W619 hypothetical protein YP_001749226.1 2628666 R 390235 CDS YP_001749227.1 170721539 6111311 complement(2629644..2629859) 1 NC_010501.1 hypothetical protein 2629859 6111311 PputW619_2358 Pseudomonas putida W619 hypothetical protein YP_001749227.1 2629644 R 390235 CDS YP_001749228.1 170721540 6111312 complement(2630208..2631125) 1 NC_010501.1 hypothetical protein 2631125 6111312 PputW619_2359 Pseudomonas putida W619 hypothetical protein YP_001749228.1 2630208 R 390235 CDS YP_001749229.1 170721541 6111313 complement(2632433..2632987) 1 NC_010501.1 hypothetical protein 2632987 6111313 PputW619_2360 Pseudomonas putida W619 hypothetical protein YP_001749229.1 2632433 R 390235 CDS YP_001749230.1 170721542 6111314 2633823..2634362 1 NC_010501.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_2120 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2634362 6111314 PputW619_2361 Pseudomonas putida W619 BadM/Rrf2 family transcriptional regulator YP_001749230.1 2633823 D 390235 CDS YP_001749231.1 170721543 6111315 complement(2634412..2635098) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1928 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2635098 6111315 PputW619_2362 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749231.1 2634412 R 390235 CDS YP_001749232.1 170721544 6111316 complement(2635178..2636119) 1 NC_010501.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 2636119 6111316 PputW619_2363 Pseudomonas putida W619 N-acetyl-gamma-glutamyl-phosphate reductase YP_001749232.1 2635178 R 390235 CDS YP_001749233.1 170721545 6111317 2636244..2637125 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1930 transcriptional regulator, LysR family; LysR family transcriptional regulator 2637125 6111317 PputW619_2364 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749233.1 2636244 D 390235 CDS YP_001749234.1 170721546 6111318 complement(2637166..2637372) 1 NC_010501.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pen:PSEEN1931 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2637372 6111318 PputW619_2365 Pseudomonas putida W619 4-oxalocrotonate tautomerase YP_001749234.1 2637166 R 390235 CDS YP_001749235.1 170721547 6111319 complement(2637391..2638125) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1932 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2638125 6111319 PputW619_2366 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749235.1 2637391 R 390235 CDS YP_001749236.1 170721548 6111320 2638250..2639170 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1933 transcriptional regulator, LysR family; LysR family transcriptional regulator 2639170 6111320 PputW619_2367 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749236.1 2638250 D 390235 CDS YP_001749237.1 170721549 6111321 2639264..2639527 1 NC_010501.1 KEGG: pen:PSEEN1934 hypothetical protein; hypothetical protein 2639527 6111321 PputW619_2368 Pseudomonas putida W619 hypothetical protein YP_001749237.1 2639264 D 390235 CDS YP_001749238.1 170721550 6111322 complement(2639655..2640323) 1 NC_010501.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN1937 hypothetical protein; SH3 type 3 domain-containing protein 2640323 6111322 PputW619_2369 Pseudomonas putida W619 SH3 type 3 domain-containing protein YP_001749238.1 2639655 R 390235 CDS YP_001749239.1 170721551 6111323 complement(2640563..2641780) 1 NC_010501.1 KEGG: hch:HCH_05630 hypothetical protein; hypothetical protein 2641780 6111323 PputW619_2370 Pseudomonas putida W619 hypothetical protein YP_001749239.1 2640563 R 390235 CDS YP_001749240.1 170721552 6111324 2641992..2642501 1 NC_010501.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pen:PSEEN2353 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 2642501 6111324 PputW619_2371 Pseudomonas putida W619 3-demethylubiquinone-9 3-methyltransferase YP_001749240.1 2641992 D 390235 CDS YP_001749241.1 170721553 6111325 complement(2642531..2643595) 1 NC_010501.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: psp:PSPPH_3023 AbrB protein; membrane protein AbrB 2643595 6111325 PputW619_2372 Pseudomonas putida W619 membrane protein AbrB YP_001749241.1 2642531 R 390235 CDS YP_001749242.1 170721554 6111326 2643718..2644620 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2331 transcriptional regulator, LysR family; LysR family transcriptional regulator 2644620 6111326 PputW619_2373 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749242.1 2643718 D 390235 CDS YP_001749243.1 170721555 6111327 complement(2644678..2645883) 1 NC_010501.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:Pfl_2451 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2645883 6111327 PputW619_2374 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001749243.1 2644678 R 390235 CDS YP_001749244.1 170721556 6111328 complement(2645966..2647021) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2453 transcriptional regulator, AraC family; AraC family transcriptional regulator 2647021 6111328 PputW619_2375 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749244.1 2645966 R 390235 CDS YP_001749245.1 170721557 6111329 2647265..2648152 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3025 hypothetical protein; hypothetical protein 2648152 6111329 PputW619_2376 Pseudomonas putida W619 hypothetical protein YP_001749245.1 2647265 D 390235 CDS YP_001749246.1 170721558 6111330 2648248..2648568 1 NC_010501.1 PFAM: protein of unknown function DUF74; KEGG: pen:PSEEN3024 hypothetical protein; hypothetical protein 2648568 6111330 PputW619_2377 Pseudomonas putida W619 hypothetical protein YP_001749246.1 2648248 D 390235 CDS YP_001749247.1 170721559 6111331 2648711..2648899 1 NC_010501.1 KEGG: pen:PSEEN3023 hypothetical protein; hypothetical protein 2648899 6111331 PputW619_2378 Pseudomonas putida W619 hypothetical protein YP_001749247.1 2648711 D 390235 CDS YP_001749248.1 170721560 6111332 2649042..2649341 1 NC_010501.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 2649341 6111332 PputW619_2379 Pseudomonas putida W619 hypothetical protein YP_001749248.1 2649042 D 390235 CDS YP_001749249.1 170721561 6111333 complement(2649399..2649731) 1 NC_010501.1 KEGG: pen:PSEEN3020 hypothetical protein; hypothetical protein 2649731 6111333 PputW619_2380 Pseudomonas putida W619 hypothetical protein YP_001749249.1 2649399 R 390235 CDS YP_001749250.1 170721562 6111334 complement(2650030..2651169) 1 NC_010501.1 PFAM: beta-lactamase; KEGG: pen:PSEEN3018 beta-lactamase class C; beta-lactamase 2651169 ampC 6111334 ampC Pseudomonas putida W619 beta-lactamase YP_001749250.1 2650030 R 390235 CDS YP_001749251.1 170721563 6111335 2651288..2652280 1 NC_010501.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3017 hypothetical protein; bile acid:sodium symporter 2652280 6111335 PputW619_2382 Pseudomonas putida W619 bile acid:sodium symporter YP_001749251.1 2651288 D 390235 CDS YP_001749252.1 170721564 6111336 complement(2652337..2652930) 1 NC_010501.1 KEGG: pen:PSEEN2061 hypothetical protein; hypothetical protein 2652930 6111336 PputW619_2383 Pseudomonas putida W619 hypothetical protein YP_001749252.1 2652337 R 390235 CDS YP_001749253.1 170721565 6111337 complement(2652917..2653480) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2062 transcriptional regulator, TetR family; TetR family transcriptional regulator 2653480 6111337 PputW619_2384 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749253.1 2652917 R 390235 CDS YP_001749254.1 170721566 6111338 2653569..2654300 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2063 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2654300 6111338 PputW619_2385 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749254.1 2653569 D 390235 CDS YP_001749255.1 170721567 6111339 2654328..2654921 1 NC_010501.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN2064 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 2654921 6111339 PputW619_2386 Pseudomonas putida W619 DSBA oxidoreductase YP_001749255.1 2654328 D 390235 CDS YP_001749256.1 170721568 6111340 complement(2654979..2655524) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2066 transcriptional regulator; XRE family transcriptional regulator 2655524 6111340 PputW619_2387 Pseudomonas putida W619 XRE family transcriptional regulator YP_001749256.1 2654979 R 390235 CDS YP_001749257.1 170721569 6111341 complement(2655601..2656803) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2067 transporter, MFS family; major facilitator transporter 2656803 6111341 PputW619_2388 Pseudomonas putida W619 major facilitator transporter YP_001749257.1 2655601 R 390235 CDS YP_001749258.1 170721570 6111342 complement(2656891..2657424) 1 NC_010501.1 PFAM: cytochrome B561; KEGG: pen:PSEEN2068 cytochrome b561; cytochrome B561 2657424 6111342 PputW619_2389 Pseudomonas putida W619 cytochrome B561 YP_001749258.1 2656891 R 390235 CDS YP_001749259.1 170721571 6111343 complement(2657421..2658467) 1 NC_010501.1 PFAM: Catalase domain protein; KEGG: pen:PSEEN2069 catalase; catalase domain-containing protein 2658467 6111343 PputW619_2390 Pseudomonas putida W619 catalase domain-containing protein YP_001749259.1 2657421 R 390235 CDS YP_001749260.1 170721572 6111344 2658597..2659118 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2071 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor 2659118 6111344 PputW619_2391 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001749260.1 2658597 D 390235 CDS YP_001749261.1 170721573 6111345 2659115..2659867 1 NC_010501.1 KEGG: pen:PSEEN2072 transmembrane regulator PrtR; putative transmembrane anti-sigma factor 2659867 6111345 PputW619_2392 Pseudomonas putida W619 putative transmembrane anti-sigma factor YP_001749261.1 2659115 D 390235 CDS YP_001749262.1 170721574 6111346 complement(2660025..2660837) 1 NC_010501.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2660837 6111346 PputW619_2393 Pseudomonas putida W619 exonuclease III YP_001749262.1 2660025 R 390235 CDS YP_001749263.1 170721575 6111347 2661000..2661650 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2077 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2661650 6111347 PputW619_2394 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749263.1 2661000 D 390235 CDS YP_001749264.1 170721576 6111348 2661693..2663444 1 NC_010501.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN2078 surface antigen; surface antigen (D15) 2663444 6111348 PputW619_2395 Pseudomonas putida W619 surface antigen (D15) YP_001749264.1 2661693 D 390235 CDS YP_001749265.1 170721577 6111349 2663444..2667115 1 NC_010501.1 PFAM: protein of unknown function DUF490; KEGG: pen:PSEEN2079 hypothetical protein; hypothetical protein 2667115 6111349 PputW619_2396 Pseudomonas putida W619 hypothetical protein YP_001749265.1 2663444 D 390235 CDS YP_001749266.1 170721578 6111350 complement(2667126..2667683) 1 NC_010501.1 KEGG: pfl:PFL_0780 hypothetical protein; hypothetical protein 2667683 6111350 PputW619_2397 Pseudomonas putida W619 hypothetical protein YP_001749266.1 2667126 R 390235 CDS YP_001749267.1 170721579 6111351 complement(2667756..2668412) 1 NC_010501.1 KEGG: pfl:PFL_0781 hypothetical protein; hypothetical protein 2668412 6111351 PputW619_2398 Pseudomonas putida W619 hypothetical protein YP_001749267.1 2667756 R 390235 CDS YP_001749268.1 170721580 6111352 complement(2668478..2668858) 1 NC_010501.1 KEGG: pen:PSEEN2080 hypothetical protein; hypothetical protein 2668858 6111352 PputW619_2399 Pseudomonas putida W619 hypothetical protein YP_001749268.1 2668478 R 390235 CDS YP_001749269.1 170721581 6111353 complement(2669091..2669591) 1 NC_010501.1 KEGG: pfl:PFL_0784 hypothetical protein; hypothetical protein 2669591 6111353 PputW619_2400 Pseudomonas putida W619 hypothetical protein YP_001749269.1 2669091 R 390235 CDS YP_001749270.1 170721582 6111354 2669743..2669931 1 NC_010501.1 KEGG: pen:PSEEN2081 hypothetical protein; hypothetical protein 2669931 6111354 PputW619_2401 Pseudomonas putida W619 hypothetical protein YP_001749270.1 2669743 D 390235 CDS YP_001749271.1 170721583 6111355 complement(2669968..2670342) 1 NC_010501.1 KEGG: pen:PSEEN2082 hypothetical protein; hypothetical protein 2670342 6111355 PputW619_2402 Pseudomonas putida W619 hypothetical protein YP_001749271.1 2669968 R 390235 CDS YP_001749272.1 170721584 6111356 2670541..2672853 1 NC_010501.1 PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN2083 penicillin amidase; peptidase S45 penicillin amidase 2672853 6111356 PputW619_2403 Pseudomonas putida W619 peptidase S45 penicillin amidase YP_001749272.1 2670541 D 390235 CDS YP_001749273.1 170721585 6111357 complement(2672985..2673707) 1 NC_010501.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2673707 6111357 PputW619_2404 Pseudomonas putida W619 UDP-2,3-diacylglucosamine hydrolase YP_001749273.1 2672985 R 390235 CDS YP_001749274.1 170721586 6111358 complement(2673704..2674204) 1 NC_010501.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN2085 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); cyclophilin type peptidyl-prolyl cis-trans isomerase 2674204 6111358 PputW619_2405 Pseudomonas putida W619 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001749274.1 2673704 R 390235 CDS YP_001749275.1 170721587 6111359 2674453..2676156 1 NC_010501.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2676156 6111359 PputW619_2406 Pseudomonas putida W619 glutaminyl-tRNA synthetase YP_001749275.1 2674453 D 390235 CDS YP_001749276.1 170721588 6111360 2676166..2677548 1 NC_010501.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2677548 cysS 6111360 cysS Pseudomonas putida W619 cysteinyl-tRNA synthetase YP_001749276.1 2676166 D 390235 CDS YP_001749277.1 170721589 6111361 complement(2677683..2679074) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2088 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2679074 6111361 PputW619_2408 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001749277.1 2677683 R 390235 CDS YP_001749278.1 170721590 6111362 complement(2679052..2679732) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2089 DNA-binding response regulator; two component transcriptional regulator 2679732 6111362 PputW619_2409 Pseudomonas putida W619 two component transcriptional regulator YP_001749278.1 2679052 R 390235 CDS YP_001749279.1 170721591 6111363 complement(2679972..2680991) 1 NC_010501.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2680991 6111363 PputW619_2410 Pseudomonas putida W619 branched-chain amino acid aminotransferase YP_001749279.1 2679972 R 390235 CDS YP_001749280.1 170721592 6111364 complement(2681114..2682706) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A1931 ABC-type transporter, duplicated ATPase domains:drug RA1 family; ABC transporter-like protein 2682706 6111364 PputW619_2411 Pseudomonas putida W619 ABC transporter-like protein YP_001749280.1 2681114 R 390235 CDS YP_001749281.1 170721593 6111365 complement(2682875..2683234) 1 NC_010501.1 KEGG: pen:PSEEN2091 hypothetical protein; hypothetical protein 2683234 6111365 PputW619_2412 Pseudomonas putida W619 hypothetical protein YP_001749281.1 2682875 R 390235 CDS YP_001749282.1 170721594 6111366 complement(2683231..2683608) 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2092 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2683608 6111366 PputW619_2413 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001749282.1 2683231 R 390235 CDS YP_001749283.1 170721595 6111367 2683937..2684770 1 NC_010501.1 PFAM: Urease accessory protein UreD; KEGG: pen:PSEEN2093 urease accessory protein UreD; urease accessory protein UreD 2684770 6111367 PputW619_2414 Pseudomonas putida W619 urease accessory protein UreD YP_001749283.1 2683937 D 390235 CDS YP_001749284.1 170721596 6111368 2684780..2685082 1 NC_010501.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 2685082 ureA 6111368 ureA Pseudomonas putida W619 urease subunit gamma YP_001749284.1 2684780 D 390235 CDS YP_001749285.1 170721597 6111369 2685102..2685419 1 NC_010501.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 2685419 ureB 6111369 ureB Pseudomonas putida W619 urease subunit beta YP_001749285.1 2685102 D 390235 CDS YP_001749286.1 170721598 6111370 2685416..2687119 1 NC_010501.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 2687119 ureC 6111370 ureC Pseudomonas putida W619 urease subunit alpha YP_001749286.1 2685416 D 390235 CDS YP_001749287.1 170721599 6111371 2687130..2687615 1 NC_010501.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 2687615 ureE 6111371 ureE Pseudomonas putida W619 urease accessory protein UreE YP_001749287.1 2687130 D 390235 CDS YP_001749288.1 170721600 6111372 2687636..2688181 1 NC_010501.1 PFAM: HupE/UreJ protein; KEGG: pen:PSEEN2098 urease accessory protein UreJ; HupE/UreJ protein 2688181 6111372 PputW619_2419 Pseudomonas putida W619 HupE/UreJ protein YP_001749288.1 2687636 D 390235 CDS YP_001749289.1 170721601 6111373 2688181..2688855 1 NC_010501.1 PFAM: Urease accessory protein UreF; KEGG: pen:PSEEN2099 urease accessory protein UreF; urease accessory protein UreF 2688855 6111373 PputW619_2420 Pseudomonas putida W619 urease accessory protein UreF YP_001749289.1 2688181 D 390235 CDS YP_001749290.1 170721602 6111374 2688867..2689490 1 NC_010501.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: pen:PSEEN2100 urease accessory protein UreG; urease accessory protein UreG 2689490 6111374 PputW619_2421 Pseudomonas putida W619 urease accessory protein UreG YP_001749290.1 2688867 D 390235 CDS YP_001749291.1 170721603 6111375 complement(2689453..2691051) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: cko:CKO_00438 hypothetical protein; diguanylate cyclase 2691051 6111375 PputW619_2422 Pseudomonas putida W619 diguanylate cyclase YP_001749291.1 2689453 R 390235 CDS YP_001749292.1 170721604 6111376 complement(2691165..2691887) 1 NC_010501.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pen:PSEEN3016 hypothetical protein; hypothetical protein 2691887 6111376 PputW619_2423 Pseudomonas putida W619 hypothetical protein YP_001749292.1 2691165 R 390235 CDS YP_001749293.1 170721605 6111377 complement(2692007..2692672) 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN3015 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 2692672 6111377 PputW619_2424 Pseudomonas putida W619 HAD family hydrolase YP_001749293.1 2692007 R 390235 CDS YP_001749294.1 170721606 6111378 2692766..2693383 1 NC_010501.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 2693383 6111378 PputW619_2425 Pseudomonas putida W619 LexA repressor YP_001749294.1 2692766 D 390235 CDS YP_001749295.1 170721607 6111379 2693383..2694003 1 NC_010501.1 KEGG: pen:PSEEN2413 hypothetical protein; hypothetical protein 2694003 6111379 PputW619_2426 Pseudomonas putida W619 hypothetical protein YP_001749295.1 2693383 D 390235 CDS YP_001749296.1 170721608 6111380 2694010..2695428 1 NC_010501.1 KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA repair nucleotidyltransferase/DNA polymerase 2695428 6111380 PputW619_2427 Pseudomonas putida W619 DNA repair nucleotidyltransferase/DNA polymerase YP_001749296.1 2694010 D 390235 CDS YP_001749297.1 170721609 6111381 2695425..2698505 1 NC_010501.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2698505 dnaE2 6111381 dnaE2 Pseudomonas putida W619 error-prone DNA polymerase YP_001749297.1 2695425 D 390235 CDS YP_001749298.1 170721610 6111382 complement(2698561..2699373) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: pen:PSEEN2462 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2699373 6111382 PputW619_2429 Pseudomonas putida W619 aldo/keto reductase YP_001749298.1 2698561 R 390235 CDS YP_001749299.1 170721611 6111383 complement(2699370..2700275) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2463 transcriptional regulator, LysR family; LysR family transcriptional regulator 2700275 6111383 PputW619_2430 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749299.1 2699370 R 390235 CDS YP_001749300.1 170721612 6111384 2700415..2701113 1 NC_010501.1 KEGG: pen:PSEEN2464 acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2701113 6111384 PputW619_2431 Pseudomonas putida W619 3-oxoacid CoA-transferase subunit A YP_001749300.1 2700415 D 390235 CDS YP_001749301.1 170721613 6111385 2701149..2701805 1 NC_010501.1 KEGG: pen:PSEEN2465 acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2701805 6111385 PputW619_2432 Pseudomonas putida W619 3-oxoacid CoA-transferase subunit B YP_001749301.1 2701149 D 390235 CDS YP_001749302.1 170721614 6111386 2701953..2703371 1 NC_010501.1 PFAM: short chain fatty acid transporter; KEGG: pen:PSEEN2481 short-chain fatty acid transporter (scFAT family); short chain fatty acid transporter 2703371 6111386 PputW619_2433 Pseudomonas putida W619 short chain fatty acid transporter YP_001749302.1 2701953 D 390235 CDS YP_001749303.1 170721615 6111387 2703517..2704338 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pfl:PFL_3317 transcriptional regulator, AraC family; AraC family transcriptional regulator 2704338 6111387 PputW619_2434 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749303.1 2703517 D 390235 CDS YP_001749304.1 170721616 6111388 complement(2704300..2704881) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_3318 efflux protein, LysE family; lysine exporter protein LysE/YggA 2704881 6111388 PputW619_2435 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749304.1 2704300 R 390235 CDS YP_001749305.1 170721617 6111389 2705140..2706711 1 NC_010501.1 PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: pen:PSEEN3059 hypothetical protein; integral membrane protein TerC 2706711 6111389 PputW619_2436 Pseudomonas putida W619 integral membrane protein TerC YP_001749305.1 2705140 D 390235 CDS YP_001749306.1 170721618 6111390 complement(2706674..2707561) 1 NC_010501.1 TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein 2707561 6111390 PputW619_2437 Pseudomonas putida W619 transporter DMT superfamily protein YP_001749306.1 2706674 R 390235 CDS YP_001749307.1 170721619 6111391 complement(2707594..2709180) 1 NC_010501.1 PFAM: EAL domain protein; KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); diguanylate phosphodiesterase 2709180 6111391 PputW619_2438 Pseudomonas putida W619 diguanylate phosphodiesterase YP_001749307.1 2707594 R 390235 CDS YP_001749308.1 170721620 6111392 2709345..2709452 1 NC_010501.1 KEGG: pen:PSEEN3055 hypothetical protein; hypothetical protein 2709452 6111392 PputW619_2439 Pseudomonas putida W619 hypothetical protein YP_001749308.1 2709345 D 390235 CDS YP_001749309.1 170721621 6111393 2709479..2710555 1 NC_010501.1 KEGG: pen:PSEEN3054 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2710555 6111393 PputW619_2440 Pseudomonas putida W619 4-hydroxyphenylpyruvate dioxygenase YP_001749309.1 2709479 D 390235 CDS YP_001749310.1 170721622 6111394 complement(2710572..2711378) 1 NC_010501.1 KEGG: pfo:Pfl_2920 putative diguanylate phosphodiesterase (EAL domain); hypothetical protein 2711378 6111394 PputW619_2441 Pseudomonas putida W619 hypothetical protein YP_001749310.1 2710572 R 390235 CDS YP_001749311.1 170721623 6111395 complement(2711513..2712196) 1 NC_010501.1 PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN3053 hypothetical protein; ThiJ/PfpI domain-containing protein 2712196 6111395 PputW619_2442 Pseudomonas putida W619 ThiJ/PfpI domain-containing protein YP_001749311.1 2711513 R 390235 CDS YP_001749312.1 170721624 6111396 2712491..2714464 1 NC_010501.1 KEGG: pen:PSEEN3051 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2714464 6111396 PputW619_2443 Pseudomonas putida W619 PAS/PAC sensor hybrid histidine kinase YP_001749312.1 2712491 D 390235 CDS YP_001749313.1 170721625 6111397 complement(2714470..2716149) 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3246 sensor histidine kinase/response regulator; histidine kinase 2716149 6111397 PputW619_2444 Pseudomonas putida W619 histidine kinase YP_001749313.1 2714470 R 390235 CDS YP_001749314.1 170721626 6111398 complement(2716176..2717231) 1 NC_010501.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN3050 hypothetical protein; hypothetical protein 2717231 6111398 PputW619_2445 Pseudomonas putida W619 hypothetical protein YP_001749314.1 2716176 R 390235 CDS YP_001749315.1 170721627 6111399 complement(2717432..2718847) 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2311 multidrug efflux RND outer membrane protein OprN; RND efflux system outer membrane lipoprotein 2718847 6111399 PputW619_2446 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001749315.1 2717432 R 390235 CDS YP_001749316.1 170721628 6111400 complement(2718844..2722023) 1 NC_010501.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2312 acridine efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein 2722023 6111400 PputW619_2447 Pseudomonas putida W619 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001749316.1 2718844 R 390235 CDS YP_001749317.1 170721629 6111401 complement(2722036..2723277) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2313 multidrug efflux RND membrane fusion protein MexE; RND family efflux transporter MFP subunit 2723277 6111401 PputW619_2448 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001749317.1 2722036 R 390235 CDS YP_001749318.1 170721630 6111402 2723457..2724629 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_2181 major facilitator superfamily; major facilitator transporter 2724629 6111402 PputW619_2449 Pseudomonas putida W619 major facilitator transporter YP_001749318.1 2723457 D 390235 CDS YP_001749319.1 170721631 6111403 complement(2724769..2725248) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2001 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2725248 6111403 PputW619_2450 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749319.1 2724769 R 390235 CDS YP_001749320.1 170721632 6111404 2725377..2726006 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2002 transporter, LysE family; lysine exporter protein LysE/YggA 2726006 6111404 PputW619_2451 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749320.1 2725377 D 390235 CDS YP_001749321.1 170721633 6111405 2726028..2726900 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN2003 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2726900 6111405 PputW619_2452 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001749321.1 2726028 D 390235 CDS YP_001749322.1 170721634 6111406 2727002..2727877 1 NC_010501.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN2646 hypothetical protein; pirin domain-containing protein 2727877 6111406 PputW619_2453 Pseudomonas putida W619 pirin domain-containing protein YP_001749322.1 2727002 D 390235 CDS YP_001749323.1 170721635 6111407 2728097..2728357 1 NC_010501.1 PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN2104 hypothetical protein; hypothetical protein 2728357 6111407 PputW619_2454 Pseudomonas putida W619 hypothetical protein YP_001749323.1 2728097 D 390235 CDS YP_001749324.1 170721636 6111408 complement(2728438..2728725) 1 NC_010501.1 KEGG: pen:PSEEN2105 hypothetical protein; hypothetical protein 2728725 6111408 PputW619_2455 Pseudomonas putida W619 hypothetical protein YP_001749324.1 2728438 R 390235 CDS YP_001749325.1 170721637 6111409 2728996..2734875 1 NC_010501.1 KEGG: pen:PSEEN2857 hypothetical protein; hypothetical protein 2734875 6111409 PputW619_2456 Pseudomonas putida W619 hypothetical protein YP_001749325.1 2728996 D 390235 CDS YP_001749326.1 170721638 6111410 2734894..2736876 1 NC_010501.1 PFAM: cytochrome d1 heme region; KEGG: pen:PSEEN2854 hypothetical protein; cytochrome d1 heme subunit 2736876 6111410 PputW619_2457 Pseudomonas putida W619 cytochrome d1 heme subunit YP_001749326.1 2734894 D 390235 CDS YP_001749327.1 170721639 6111411 2736873..2737529 1 NC_010501.1 PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein; electron transport protein SCO1/SenC 2737529 6111411 PputW619_2458 Pseudomonas putida W619 electron transport protein SCO1/SenC YP_001749327.1 2736873 D 390235 CDS YP_001749328.1 170721640 6111412 2737526..2738191 1 NC_010501.1 KEGG: pen:PSEEN2852 SCO1/SenC family protein; SCO1/SenC family protein 2738191 6111412 PputW619_2459 Pseudomonas putida W619 SCO1/SenC family protein YP_001749328.1 2737526 D 390235 CDS YP_001749329.1 170721641 6111413 2738302..2739828 1 NC_010501.1 KEGG: pen:PSEEN2851 cytochrome c; cytochrome c 2739828 6111413 PputW619_2460 Pseudomonas putida W619 cytochrome c YP_001749329.1 2738302 D 390235 CDS YP_001749330.1 170721642 6111414 2739841..2740482 1 NC_010501.1 KEGG: pen:PSEEN2850 hypothetical protein; hypothetical protein 2740482 6111414 PputW619_2461 Pseudomonas putida W619 hypothetical protein YP_001749330.1 2739841 D 390235 CDS YP_001749331.1 170721643 6111415 2740723..2741253 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN2849 response regulator; response regulator receiver protein 2741253 6111415 PputW619_2462 Pseudomonas putida W619 response regulator receiver protein YP_001749331.1 2740723 D 390235 CDS YP_001749332.1 170721644 6111416 2741311..2743101 1 NC_010501.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN2848 type II secretion system protein E; type II secretion system protein E 2743101 6111416 PputW619_2463 Pseudomonas putida W619 type II secretion system protein E YP_001749332.1 2741311 D 390235 CDS YP_001749333.1 170721645 6111417 2743082..2743876 1 NC_010501.1 KEGG: pen:PSEEN2847 hypothetical protein; hypothetical protein 2743876 6111417 PputW619_2464 Pseudomonas putida W619 hypothetical protein YP_001749333.1 2743082 D 390235 CDS YP_001749334.1 170721646 6111418 2743878..2744420 1 NC_010501.1 KEGG: pen:PSEEN2846 hypothetical protein; hypothetical protein 2744420 6111418 PputW619_2465 Pseudomonas putida W619 hypothetical protein YP_001749334.1 2743878 D 390235 CDS YP_001749335.1 170721647 6111419 2744407..2744970 1 NC_010501.1 KEGG: pen:PSEEN2845 hypothetical protein; hypothetical protein 2744970 6111419 PputW619_2466 Pseudomonas putida W619 hypothetical protein YP_001749335.1 2744407 D 390235 CDS YP_001749336.1 170721648 6111420 2744970..2745467 1 NC_010501.1 KEGG: pen:PSEEN2844 hypothetical protein; hypothetical protein 2745467 6111420 PputW619_2467 Pseudomonas putida W619 hypothetical protein YP_001749336.1 2744970 D 390235 CDS YP_001749337.1 170721649 6111421 2745464..2747341 1 NC_010501.1 PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN2843 secretion type II protein related to GspD (secretin) protein; type II and III secretion system protein 2747341 6111421 PputW619_2468 Pseudomonas putida W619 type II and III secretion system protein YP_001749337.1 2745464 D 390235 CDS YP_001749338.1 170721650 6111422 2747338..2747811 1 NC_010501.1 KEGG: pen:PSEEN2842 secretion type II protein related to protein G. signal peptide; G protein signal peptide-like secretion type II protein 2747811 6111422 PputW619_2469 Pseudomonas putida W619 G protein signal peptide-like secretion type II protein YP_001749338.1 2747338 D 390235 CDS YP_001749339.1 170721651 6111423 2747817..2748191 1 NC_010501.1 PFAM: type II secretion system protein G; KEGG: pen:PSEEN2841 secretion protein; type II secretion system protein G 2748191 6111423 PputW619_2470 Pseudomonas putida W619 type II secretion system protein G YP_001749339.1 2747817 D 390235 CDS YP_001749340.1 170721652 6111424 2748166..2748693 1 NC_010501.1 KEGG: pen:PSEEN2840 hypothetical protein; hypothetical protein 2748693 6111424 PputW619_2471 Pseudomonas putida W619 hypothetical protein YP_001749340.1 2748166 D 390235 CDS YP_001749341.1 170721653 6111425 2748690..2749097 1 NC_010501.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2749097 6111425 PputW619_2472 Pseudomonas putida W619 curli assembly protein CsgE YP_001749341.1 2748690 D 390235 CDS YP_001749342.1 170721654 6111426 2749094..2749507 1 NC_010501.1 KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; curli production assembly/transport protein CsgF 2749507 6111426 PputW619_2473 Pseudomonas putida W619 curli production assembly/transport protein CsgF YP_001749342.1 2749094 D 390235 CDS YP_001749343.1 170721655 6111427 2749541..2750392 1 NC_010501.1 PFAM: Curli production assembly/transport component CsgG; KEGG: pen:PSEEN2837 curli production assembly/transport component CsgG precursor; curli production assembly/transport protein CsgG 2750392 6111427 PputW619_2474 Pseudomonas putida W619 curli production assembly/transport protein CsgG YP_001749343.1 2749541 D 390235 CDS YP_001749344.1 170721656 6111428 complement(2750485..2751207) 1 NC_010501.1 PFAM: ribonuclease T2; KEGG: mlo:mll1611 probable ribonuclease; ribonuclease T2 2751207 6111428 PputW619_2475 Pseudomonas putida W619 ribonuclease T2 YP_001749344.1 2750485 R 390235 CDS YP_001749345.1 170721657 6111429 complement(2751321..2751965) 1 NC_010501.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pen:PSEEN2825 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA; 2OG-Fe(II) oxygenase 2751965 6111429 PputW619_2476 Pseudomonas putida W619 2OG-Fe(II) oxygenase YP_001749345.1 2751321 R 390235 CDS YP_001749346.1 170721658 6111430 complement(2752007..2752360) 1 NC_010501.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2914 hypothetical protein; cupin 2752360 6111430 PputW619_2477 Pseudomonas putida W619 cupin YP_001749346.1 2752007 R 390235 CDS YP_001749347.1 170721659 6111431 2752478..2753377 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2913 transcriptional regulator, LysR family; LysR family transcriptional regulator 2753377 6111431 PputW619_2478 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749347.1 2752478 D 390235 CDS YP_001749348.1 170721660 6111432 2753491..2754699 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2912 transporter, MFS superfamily; major facilitator transporter 2754699 6111432 PputW619_2479 Pseudomonas putida W619 major facilitator transporter YP_001749348.1 2753491 D 390235 CDS YP_001749349.1 170721661 6111433 complement(2754704..2755315) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2911 transporter, LysE family; lysine exporter protein LysE/YggA 2755315 6111433 PputW619_2480 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749349.1 2754704 R 390235 CDS YP_001749350.1 170721662 6111434 2755422..2756417 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2910 transcriptional regulator, AraC family; AraC family transcriptional regulator 2756417 6111434 PputW619_2481 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749350.1 2755422 D 390235 CDS YP_001749351.1 170721663 6111435 complement(2756384..2757235) 1 NC_010501.1 PFAM: SCP-like extracellular; KEGG: pen:PSEEN2909 hypothetical protein; hypothetical protein 2757235 6111435 PputW619_2482 Pseudomonas putida W619 hypothetical protein YP_001749351.1 2756384 R 390235 CDS YP_001749352.1 170721664 6111436 complement(2757484..2758095) 1 NC_010501.1 PFAM: cell wall hydrolase SleB; KEGG: pen:PSEEN2908 hypothetical protein; cell wall hydrolase SleB 2758095 6111436 PputW619_2483 Pseudomonas putida W619 cell wall hydrolase SleB YP_001749352.1 2757484 R 390235 CDS YP_001749353.1 170721665 6111437 complement(2758144..2759061) 1 NC_010501.1 PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN2907 hypothetical protein; auxin efflux carrier 2759061 6111437 PputW619_2484 Pseudomonas putida W619 auxin efflux carrier YP_001749353.1 2758144 R 390235 CDS YP_001749354.1 170721666 6111438 2759267..2759782 1 NC_010501.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: bpe:BP2067 putative superoxide dismutase; superoxide dismutase 2759782 6111438 PputW619_2485 Pseudomonas putida W619 superoxide dismutase YP_001749354.1 2759267 D 390235 CDS YP_001749355.1 170721667 6111439 complement(2759789..2760388) 1 NC_010501.1 PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN2926 hypothetical protein; lipid-binding START domain-containing protein 2760388 6111439 PputW619_2486 Pseudomonas putida W619 lipid-binding START domain-containing protein YP_001749355.1 2759789 R 390235 CDS YP_001749356.1 170721668 6111440 complement(2760478..2761314) 1 NC_010501.1 TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2925 hypothetical protein; hypothetical protein 2761314 6111440 PputW619_2487 Pseudomonas putida W619 hypothetical protein YP_001749356.1 2760478 R 390235 CDS YP_001749357.1 170721669 6111441 complement(2761515..2762186) 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2169 hypothetical protein; type 11 methyltransferase 2762186 6111441 PputW619_2488 Pseudomonas putida W619 type 11 methyltransferase YP_001749357.1 2761515 R 390235 CDS YP_001749358.1 170721670 6111442 complement(2762231..2762782) 1 NC_010501.1 PFAM: PEBP family protein; KEGG: reu:Reut_B3733 YbhB and YbcL; PEBP family protein 2762782 6111442 PputW619_2489 Pseudomonas putida W619 PEBP family protein YP_001749358.1 2762231 R 390235 CDS YP_001749359.1 170721671 6111443 complement(2762831..2763142) 1 NC_010501.1 KEGG: pen:PSEEN2677 hypothetical protein; hypothetical protein 2763142 6111443 PputW619_2490 Pseudomonas putida W619 hypothetical protein YP_001749359.1 2762831 R 390235 CDS YP_001749360.1 170721672 6111444 complement(2763255..2764547) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2678 hypothetical protein; major facilitator transporter 2764547 6111444 PputW619_2491 Pseudomonas putida W619 major facilitator transporter YP_001749360.1 2763255 R 390235 CDS YP_001749361.1 170721673 6111445 2765084..2765959 1 NC_010501.1 PFAM: Auxin Efflux Carrier; KEGG: pap:PSPA7_3571 hypothetical protein; auxin efflux carrier 2765959 6111445 PputW619_2492 Pseudomonas putida W619 auxin efflux carrier YP_001749361.1 2765084 D 390235 CDS YP_001749362.1 170721674 6111446 complement(2765995..2766627) 1 NC_010501.1 KEGG: pen:PSEEN2680 hypothetical protein; hypothetical protein 2766627 6111446 PputW619_2493 Pseudomonas putida W619 hypothetical protein YP_001749362.1 2765995 R 390235 CDS YP_001749363.1 170721675 6111447 complement(2766757..2767890) 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pfo:Pfl_3448 secretion protein HlyD; secretion protein HlyD family protein 2767890 6111447 PputW619_2494 Pseudomonas putida W619 secretion protein HlyD family protein YP_001749363.1 2766757 R 390235 CDS YP_001749364.1 170721676 6111448 complement(2767887..2769536) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3449 major facilitator superfamily MFS_1; major facilitator transporter 2769536 6111448 PputW619_2495 Pseudomonas putida W619 major facilitator transporter YP_001749364.1 2767887 R 390235 CDS YP_001749365.1 170721677 6111449 complement(2769660..2772176) 1 NC_010501.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pfl:PFL_3691 UvrABC system, A protein; excinuclease ABC subunit A 2772176 6111449 PputW619_2496 Pseudomonas putida W619 excinuclease ABC subunit A YP_001749365.1 2769660 R 390235 CDS YP_001749366.1 170721678 6111450 complement(2772239..2773333) 1 NC_010501.1 TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: psp:PSPPH_0121 ImpA-related N-terminal family; ImpA family type VI secretion-associated protein 2773333 6111450 PputW619_2497 Pseudomonas putida W619 ImpA family type VI secretion-associated protein YP_001749366.1 2772239 R 390235 CDS YP_001749367.1 170721679 6111451 complement(2773428..2773946) 1 NC_010501.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_0122 hypothetical protein; Hcp1 family type VI secretion system effector 2773946 6111451 PputW619_2498 Pseudomonas putida W619 Hcp1 family type VI secretion system effector YP_001749367.1 2773428 R 390235 CDS YP_001749368.1 170721680 6111452 complement(2774090..2776585) 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0123 OmpA domain protein; OmpA/MotB domain-containing protein 2776585 6111452 PputW619_2499 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001749368.1 2774090 R 390235 CDS YP_001749369.1 170721681 6111453 complement(2776582..2777490) 1 NC_010501.1 KEGG: psb:Psyr_4963 hypothetical protein; hypothetical protein 2777490 6111453 PputW619_2500 Pseudomonas putida W619 hypothetical protein YP_001749369.1 2776582 R 390235 CDS YP_001749370.1 170721682 6111454 complement(2777487..2781293) 1 NC_010501.1 TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: psp:PSPPH_0125 ImcF-related family; type VI secretion protein IcmF 2781293 6111454 PputW619_2501 Pseudomonas putida W619 type VI secretion protein IcmF YP_001749370.1 2777487 R 390235 CDS YP_001749371.1 170721683 6111455 complement(2781324..2782040) 1 NC_010501.1 KEGG: psp:PSPPH_0126 hypothetical protein; hypothetical protein 2782040 6111455 PputW619_2502 Pseudomonas putida W619 hypothetical protein YP_001749371.1 2781324 R 390235 CDS YP_001749372.1 170721684 6111456 complement(2782037..2783380) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: psb:Psyr_4960 protein of unknown function DUF876; type VI secretion protein 2783380 6111456 PputW619_2503 Pseudomonas putida W619 type VI secretion protein YP_001749372.1 2782037 R 390235 CDS YP_001749373.1 170721685 6111457 complement(2783377..2784099) 1 NC_010501.1 KEGG: psp:PSPPH_0128 lipoprotein, putative; putative lipoprotein 2784099 6111457 PputW619_2504 Pseudomonas putida W619 putative lipoprotein YP_001749373.1 2783377 R 390235 CDS YP_001749374.1 170721686 6111458 complement(2784125..2786722) 1 NC_010501.1 KEGG: psb:Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N terminal; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 2786722 6111458 PputW619_2505 Pseudomonas putida W619 type VI secretion ATPase YP_001749374.1 2784125 R 390235 CDS YP_001749375.1 170721687 6111459 complement(2786719..2787789) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: psp:PSPPH_0130 ImpH; type VI secretion protein 2787789 6111459 PputW619_2506 Pseudomonas putida W619 type VI secretion protein YP_001749375.1 2786719 R 390235 CDS YP_001749376.1 170721688 6111460 complement(2787753..2789573) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879; type VI secretion protein 2789573 6111460 PputW619_2507 Pseudomonas putida W619 type VI secretion protein YP_001749376.1 2787753 R 390235 CDS YP_001749377.1 170721689 6111461 complement(2789573..2790055) 1 NC_010501.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: psp:PSPPH_0132 protein of unknown function (DUF1316) subfamily; type VI secretion system lysozyme-like protein 2790055 6111461 PputW619_2508 Pseudomonas putida W619 type VI secretion system lysozyme-like protein YP_001749377.1 2789573 R 390235 CDS YP_001749378.1 170721690 6111462 complement(2790082..2791584) 1 NC_010501.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: psp:PSPPH_0133 hypothetical protein; EvpB family type VI secretion protein 2791584 6111462 PputW619_2509 Pseudomonas putida W619 EvpB family type VI secretion protein YP_001749378.1 2790082 R 390235 CDS YP_001749379.1 170721691 6111463 complement(2791599..2792132) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: psp:PSPPH_0134 hypothetical protein; type VI secretion protein 2792132 6111463 PputW619_2510 Pseudomonas putida W619 type VI secretion protein YP_001749379.1 2791599 R 390235 CDS YP_001749380.1 170721692 6111464 complement(2792195..2792944) 1 NC_010501.1 KEGG: psp:PSPPH_0135 hypothetical protein; hypothetical protein 2792944 6111464 PputW619_2511 Pseudomonas putida W619 hypothetical protein YP_001749380.1 2792195 R 390235 CDS YP_001749381.1 170721693 6111465 complement(2793687..2794238) 1 NC_010501.1 KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein 2794238 6111465 PputW619_2512 Pseudomonas putida W619 hypothetical protein YP_001749381.1 2793687 R 390235 CDS YP_001749382.1 170721694 6111466 2794369..2795484 1 NC_010501.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_4977 ADP-ribosylglycohydrolase; ADP-ribosyl-(dinitrogen reductase) hydrolase 2795484 6111466 PputW619_2513 Pseudomonas putida W619 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_001749382.1 2794369 D 390235 CDS YP_001749383.1 170721695 6111467 complement(2796122..2796493) 1 NC_010501.1 KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein 2796493 6111467 PputW619_2514 Pseudomonas putida W619 hypothetical protein YP_001749383.1 2796122 R 390235 CDS YP_001749384.1 170721696 6111468 complement(2796885..2797442) 1 NC_010501.1 KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein 2797442 6111468 PputW619_2515 Pseudomonas putida W619 hypothetical protein YP_001749384.1 2796885 R 390235 CDS YP_001749385.1 170721697 6111469 complement(2797445..2798461) 1 NC_010501.1 KEGG: aav:Aave_3264 hypothetical protein; hypothetical protein 2798461 6111469 PputW619_2516 Pseudomonas putida W619 hypothetical protein YP_001749385.1 2797445 R 390235 CDS YP_001749386.1 170721698 6111470 2798673..2800523 1 NC_010501.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: psb:Psyr_4983 rhs element Vgr protein; ImpA family type VI secretion-associated protein 2800523 6111470 PputW619_2517 Pseudomonas putida W619 ImpA family type VI secretion-associated protein YP_001749386.1 2798673 D 390235 CDS YP_001749387.1 170721699 6111471 2800534..2801115 1 NC_010501.1 KEGG: psp:PSPPH_5070 hypothetical protein; hypothetical protein 2801115 6111471 PputW619_2518 Pseudomonas putida W619 hypothetical protein YP_001749387.1 2800534 D 390235 CDS YP_001749388.1 170721700 6111472 2801154..2801621 1 NC_010501.1 PFAM: Domain of unknown function DUF1795; KEGG: psp:PSPPH_5071 hypothetical protein; hypothetical protein 2801621 6111472 PputW619_2519 Pseudomonas putida W619 hypothetical protein YP_001749388.1 2801154 D 390235 CDS YP_001749389.1 170721701 6111473 2801626..2805861 1 NC_010501.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 2805861 6111473 PputW619_2520 Pseudomonas putida W619 YD repeat-containing protein YP_001749389.1 2801626 D 390235 CDS YP_001749390.1 170721702 6111474 2805870..2806655 1 NC_010501.1 KEGG: ypp:YPDSF_0223 hypothetical protein; hypothetical protein 2806655 6111474 PputW619_2521 Pseudomonas putida W619 hypothetical protein YP_001749390.1 2805870 D 390235 CDS YP_001749391.1 170721703 6111476 2808692..2809285 1 NC_010501.1 KEGG: psp:PSPPH_1452 hypothetical protein; hypothetical protein 2809285 6111476 PputW619_2524 Pseudomonas putida W619 hypothetical protein YP_001749391.1 2808692 D 390235 CDS YP_001749392.1 170721704 6111477 2809651..2811336 1 NC_010501.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 2811336 6111477 PputW619_2525 Pseudomonas putida W619 YD repeat-containing protein YP_001749392.1 2809651 D 390235 CDS YP_001749393.1 170721705 6111478 2811416..2811925 1 NC_010501.1 KEGG: aav:Aave_3473 hypothetical protein; hypothetical protein 2811925 6111478 PputW619_2526 Pseudomonas putida W619 hypothetical protein YP_001749393.1 2811416 D 390235 CDS YP_001749394.1 170721706 6111479 2812360..2812890 1 NC_010501.1 KEGG: shw:Sputw3181_3748 hypothetical protein; hypothetical protein 2812890 6111479 PputW619_2527 Pseudomonas putida W619 hypothetical protein YP_001749394.1 2812360 D 390235 CDS YP_001749395.1 170721707 6111480 2813055..2813906 1 NC_010501.1 TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2813906 6111480 PputW619_2528 Pseudomonas putida W619 YD repeat-containing protein YP_001749395.1 2813055 D 390235 CDS YP_001749396.1 170721708 6111481 2814316..2814726 1 NC_010501.1 KEGG: esa:ESA_03888 hypothetical protein; hypothetical protein 2814726 6111481 PputW619_2529 Pseudomonas putida W619 hypothetical protein YP_001749396.1 2814316 D 390235 CDS YP_001749397.1 170721709 6111483 2815376..2815987 1 NC_010501.1 KEGG: shw:Sputw3181_3749 hypothetical protein; hypothetical protein 2815987 6111483 PputW619_2532 Pseudomonas putida W619 hypothetical protein YP_001749397.1 2815376 D 390235 CDS YP_001749398.1 170721710 6111484 2815963..2816100 1 NC_010501.1 KEGG: psb:Psyr_4992 YD repeat; YD repeat-containing protein 2816100 6111484 PputW619_2533 Pseudomonas putida W619 YD repeat-containing protein YP_001749398.1 2815963 D 390235 CDS YP_001749399.1 170721711 6111485 2816522..2816746 1 NC_010501.1 hypothetical protein 2816746 6111485 PputW619_2534 Pseudomonas putida W619 hypothetical protein YP_001749399.1 2816522 D 390235 CDS YP_001749400.1 170721712 6111486 2817035..2817409 1 NC_010501.1 KEGG: psb:Psyr_2605 transposase, putative; transposase 2817409 6111486 PputW619_2535 Pseudomonas putida W619 transposase YP_001749400.1 2817035 D 390235 CDS YP_001749401.1 170721713 6111487 2817788..2818063 1 NC_010501.1 hypothetical protein 2818063 6111487 PputW619_2536 Pseudomonas putida W619 hypothetical protein YP_001749401.1 2817788 D 390235 CDS YP_001749402.1 170721714 6111488 2818060..2818695 1 NC_010501.1 KEGG: shw:Sputw3181_3749 hypothetical protein; hypothetical protein 2818695 6111488 PputW619_2537 Pseudomonas putida W619 hypothetical protein YP_001749402.1 2818060 D 390235 CDS YP_001749403.1 170721715 6111489 2818986..2819333 1 NC_010501.1 KEGG: psp:PSPPH_5073 hypothetical protein; hypothetical protein 2819333 6111489 PputW619_2538 Pseudomonas putida W619 hypothetical protein YP_001749403.1 2818986 D 390235 CDS YP_001749404.1 170721716 6111491 2820294..2820755 1 NC_010501.1 KEGG: stm:STM0294 putative cytoplasmic protein; putative cytoplasmic protein 2820755 6111491 PputW619_2540 Pseudomonas putida W619 putative cytoplasmic protein YP_001749404.1 2820294 D 390235 CDS YP_001749405.1 170721717 6111492 2820899..2821690 1 NC_010501.1 PFAM: aminoacyl-tRNA synthetase class I; KEGG: fjo:Fjoh_0894 hypothetical protein; aminoacyl-tRNA synthetase class I 2821690 6111492 PputW619_2541 Pseudomonas putida W619 aminoacyl-tRNA synthetase class I YP_001749405.1 2820899 D 390235 CDS YP_001749406.1 170721718 6111494 2822808..2823335 1 NC_010501.1 KEGG: esa:ESA_03898 hypothetical protein; hypothetical protein 2823335 6111494 PputW619_2543 Pseudomonas putida W619 hypothetical protein YP_001749406.1 2822808 D 390235 CDS YP_001749407.1 170721719 6111495 2824082..2824333 1 NC_010501.1 KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2824333 6111495 PputW619_2544 Pseudomonas putida W619 YD repeat-containing protein YP_001749407.1 2824082 D 390235 CDS YP_001749408.1 170721720 6111496 2824662..2824979 1 NC_010501.1 hypothetical protein 2824979 6111496 PputW619_2545 Pseudomonas putida W619 hypothetical protein YP_001749408.1 2824662 D 390235 CDS YP_001749409.1 170721721 6111497 2825208..2825450 1 NC_010501.1 KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2825450 6111497 PputW619_2546 Pseudomonas putida W619 YD repeat-containing protein YP_001749409.1 2825208 D 390235 CDS YP_001749410.1 170721722 6111498 complement(2825872..2826141) 1 NC_010501.1 KEGG: pen:PSEEN3074 hypothetical protein; hypothetical protein 2826141 6111498 PputW619_2547 Pseudomonas putida W619 hypothetical protein YP_001749410.1 2825872 R 390235 CDS YP_001749411.1 170721723 6111499 complement(2826306..2826491) 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 2826491 6111499 PputW619_2548 Pseudomonas putida W619 hypothetical protein YP_001749411.1 2826306 R 390235 CDS YP_001749412.1 170721724 6111500 2827025..2828194 1 NC_010501.1 KEGG: pfo:Pfl_1291 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2828194 6111500 PputW619_2549 Pseudomonas putida W619 amidohydrolase YP_001749412.1 2827025 D 390235 CDS YP_001749413.1 170721725 6111501 2828255..2829565 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1292 general substrate transporter; major facilitator transporter 2829565 6111501 PputW619_2550 Pseudomonas putida W619 major facilitator transporter YP_001749413.1 2828255 D 390235 CDS YP_001749414.1 170721726 6111502 2829562..2831019 1 NC_010501.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2831019 6111502 PputW619_2551 Pseudomonas putida W619 amidase YP_001749414.1 2829562 D 390235 CDS YP_001749415.1 170721727 6111503 2831089..2831862 1 NC_010501.1 PFAM: regulatory protein IclR; KEGG: pfo:Pfl_1294 transcriptional regulator, IclR family; IclR family transcriptional regulator 2831862 6111503 PputW619_2552 Pseudomonas putida W619 IclR family transcriptional regulator YP_001749415.1 2831089 D 390235 CDS YP_001749416.1 170721728 6111504 2831950..2832606 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2026 ABC transporter-like; ABC transporter-like protein 2832606 6111504 PputW619_2553 Pseudomonas putida W619 ABC transporter-like protein YP_001749416.1 2831950 D 390235 CDS YP_001749417.1 170721729 6111505 2832606..2835065 1 NC_010501.1 PFAM: protein of unknown function DUF214; KEGG: pfl:PFL_2229 ABC transporter, permease protein, putative; hypothetical protein 2835065 6111505 PputW619_2554 Pseudomonas putida W619 hypothetical protein YP_001749417.1 2832606 D 390235 CDS YP_001749418.1 170721730 6111506 2835055..2836113 1 NC_010501.1 KEGG: pfl:PFL_2230 lipoprotein, putative; putative lipoprotein 2836113 6111506 PputW619_2555 Pseudomonas putida W619 putative lipoprotein YP_001749418.1 2835055 D 390235 CDS YP_001749419.1 170721731 6111507 complement(2836183..2837178) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: psb:Psyr_1790 aldo/keto reductase; aldo/keto reductase 2837178 6111507 PputW619_2556 Pseudomonas putida W619 aldo/keto reductase YP_001749419.1 2836183 R 390235 CDS YP_001749420.1 170721732 6111508 complement(2837275..2838126) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_7356 putative transcriptional regulator, LysR family; LysR family transcriptional regulator 2838126 6111508 PputW619_2557 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749420.1 2837275 R 390235 CDS YP_001749421.1 170721733 6111509 2838323..2839234 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2437 transcriptional regulator, LysR-family; LysR family transcriptional regulator 2839234 6111509 PputW619_2558 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749421.1 2838323 D 390235 CDS YP_001749422.1 170721734 6111510 2839336..2840244 1 NC_010501.1 PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_3685 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2840244 6111510 PputW619_2559 Pseudomonas putida W619 pyruvate carboxyltransferase YP_001749422.1 2839336 D 390235 CDS YP_001749423.1 170721735 6111511 2840256..2841449 1 NC_010501.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2438 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2841449 6111511 PputW619_2560 Pseudomonas putida W619 L-carnitine dehydratase/bile acid-inducible protein F YP_001749423.1 2840256 D 390235 CDS YP_001749424.1 170721736 6111512 2841452..2841976 1 NC_010501.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: bam:Bamb_2140 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 2841976 6111512 PputW619_2561 Pseudomonas putida W619 hexapaptide repeat-containing transferase YP_001749424.1 2841452 D 390235 CDS YP_001749425.1 170721737 6111513 2842042..2843358 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1316 general substrate transporter; major facilitator transporter 2843358 6111513 PputW619_2562 Pseudomonas putida W619 major facilitator transporter YP_001749425.1 2842042 D 390235 CDS YP_001749426.1 170721738 6111514 2843411..2844694 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pae:PA0755 probable porin; outer membrane porin 2844694 6111514 PputW619_2563 Pseudomonas putida W619 outer membrane porin YP_001749426.1 2843411 D 390235 CDS YP_001749427.1 170721739 6111515 2844923..2845660 1 NC_010501.1 KEGG: pfl:PFL_0053 hypothetical protein; gluconate 2-dehydrogenase 2845660 6111515 PputW619_2564 Pseudomonas putida W619 gluconate 2-dehydrogenase YP_001749427.1 2844923 D 390235 CDS YP_001749428.1 170721740 6111516 2845664..2847448 1 NC_010501.1 PFAM: glucose-methanol-choline oxidoreductase; KEGG: pfo:Pfl_0085 glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2847448 6111516 PputW619_2565 Pseudomonas putida W619 gluconate 2-dehydrogenase YP_001749428.1 2845664 D 390235 CDS YP_001749429.1 170721741 6111517 2847460..2848707 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pfl:PFL_0055 cytochrome c family protein; gluconate 2-dehydrogenase 2848707 6111517 PputW619_2566 Pseudomonas putida W619 gluconate 2-dehydrogenase YP_001749429.1 2847460 D 390235 CDS YP_001749430.1 170721742 6111518 2848958..2849980 1 NC_010501.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pau:PA14_35370 transcriptional regulator PtxS; LacI family transcriptional regulator 2849980 6111518 PputW619_2567 Pseudomonas putida W619 LacI family transcriptional regulator YP_001749430.1 2848958 D 390235 CDS YP_001749431.1 170721743 6111519 2850052..2850831 1 NC_010501.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pap:PSPA7_2980 hypothetical protein; xylose isomerase domain-containing protein 2850831 6111519 PputW619_2568 Pseudomonas putida W619 xylose isomerase domain-containing protein YP_001749431.1 2850052 D 390235 CDS YP_001749432.1 170721744 6111520 2850824..2851774 1 NC_010501.1 PFAM: PfkB domain protein; KEGG: pfo:Pfl_2902 PfkB; ribokinase-like domain-containing protein 2851774 6111520 PputW619_2569 Pseudomonas putida W619 ribokinase-like domain-containing protein YP_001749432.1 2850824 D 390235 CDS YP_001749433.1 170721745 6111521 2851836..2853128 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA2262 probable 2-ketogluconate transporter; major facilitator transporter 2853128 6111521 PputW619_2570 Pseudomonas putida W619 major facilitator transporter YP_001749433.1 2851836 D 390235 CDS YP_001749434.1 170721746 6111522 2853138..2854103 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pfo:Pfl_2904 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2854103 6111522 PputW619_2571 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001749434.1 2853138 D 390235 CDS YP_001749435.1 170721747 6111523 complement(2854173..2855360) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_2918 major facilitator family transporter; major facilitator transporter 2855360 6111523 PputW619_2572 Pseudomonas putida W619 major facilitator transporter YP_001749435.1 2854173 R 390235 CDS YP_001749436.1 170721748 6111524 complement(2855449..2856822) 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_0446 putrescine importer; amino acid permease-associated protein 2856822 6111524 PputW619_2573 Pseudomonas putida W619 amino acid permease-associated protein YP_001749436.1 2855449 R 390235 CDS YP_001749437.1 170721749 6111525 complement(2857015..2859549) 1 NC_010501.1 PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein 2859549 6111525 PputW619_2574 Pseudomonas putida W619 response regulator receiver modulated GAF sensor protein YP_001749437.1 2857015 R 390235 CDS YP_001749438.1 170721750 6111526 complement(2859779..2860162) 1 NC_010501.1 KEGG: pen:PSEEN2696 hypothetical protein; hypothetical protein 2860162 6111526 PputW619_2575 Pseudomonas putida W619 hypothetical protein YP_001749438.1 2859779 R 390235 CDS YP_001749439.1 170721751 6111527 complement(2860174..2861181) 1 NC_010501.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5645 zinc-binding alcohol dehydrogenase family protein; zinc-binding alcohol dehydrogenase family protein 2861181 6111527 PputW619_2576 Pseudomonas putida W619 zinc-binding alcohol dehydrogenase family protein YP_001749439.1 2860174 R 390235 CDS YP_001749440.1 170721752 6111528 complement(2861317..2862237) 1 NC_010501.1 PFAM: protein of unknown function UPF0187; KEGG: psb:Psyr_1182 hypothetical protein; hypothetical protein 2862237 6111528 PputW619_2577 Pseudomonas putida W619 hypothetical protein YP_001749440.1 2861317 R 390235 CDS YP_001749441.1 170721753 6111529 2862407..2864476 1 NC_010501.1 KEGG: psb:Psyr_3532 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2864476 6111529 PputW619_2578 Pseudomonas putida W619 PAS/PAC sensor hybrid histidine kinase YP_001749441.1 2862407 D 390235 CDS YP_001749442.1 170721754 6111530 complement(2864508..2865083) 1 NC_010501.1 PFAM: protein of unknown function DUF330; KEGG: pfo:Pfl_2832 protein of unknown function DUF330; hypothetical protein 2865083 6111530 PputW619_2579 Pseudomonas putida W619 hypothetical protein YP_001749442.1 2864508 R 390235 CDS YP_001749443.1 170721755 6111531 complement(2865080..2866735) 1 NC_010501.1 PFAM: Mammalian cell entry related domain protein; KEGG: pfo:Pfl_2831 hypothetical protein; hypothetical protein 2866735 6111531 PputW619_2580 Pseudomonas putida W619 hypothetical protein YP_001749443.1 2865080 R 390235 CDS YP_001749444.1 170721756 6111532 complement(2866716..2867360) 1 NC_010501.1 PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2440 paraquat-inducible protein A; paraquat-inducible protein A 2867360 6111532 PputW619_2581 Pseudomonas putida W619 paraquat-inducible protein A YP_001749444.1 2866716 R 390235 CDS YP_001749445.1 170721757 6111533 complement(2867357..2867956) 1 NC_010501.1 PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2441 paraquat-inducible protein A; paraquat-inducible protein A 2867956 6111533 PputW619_2582 Pseudomonas putida W619 paraquat-inducible protein A YP_001749445.1 2867357 R 390235 CDS YP_001749446.1 170721758 6111534 2868184..2868861 1 NC_010501.1 KEGG: pfo:Pfl_2516 hypothetical protein; hypothetical protein 2868861 6111534 PputW619_2583 Pseudomonas putida W619 hypothetical protein YP_001749446.1 2868184 D 390235 CDS YP_001749447.1 170721759 6111535 2868987..2869409 1 NC_010501.1 KEGG: pen:PSEEN2728 lipoprotein; lipoprotein 2869409 6111535 PputW619_2584 Pseudomonas putida W619 lipoprotein YP_001749447.1 2868987 D 390235 CDS YP_001749448.1 170721760 6111536 2869503..2870120 1 NC_010501.1 KEGG: pen:PSEEN2729 hypothetical protein; hypothetical protein 2870120 6111536 PputW619_2585 Pseudomonas putida W619 hypothetical protein YP_001749448.1 2869503 D 390235 CDS YP_001749449.1 170721761 6111537 complement(2870134..2871078) 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pau:PA14_64810 vanillate O-demethylase oxidoreductase; ferredoxin 2871078 6111537 PputW619_2586 Pseudomonas putida W619 ferredoxin YP_001749449.1 2870134 R 390235 CDS YP_001749450.1 170721762 6111538 complement(2871075..2872505) 1 NC_010501.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: kpn:KPN_02032 putative hydrolase protein; amidohydrolase 2872505 6111538 PputW619_2587 Pseudomonas putida W619 amidohydrolase YP_001749450.1 2871075 R 390235 CDS YP_001749451.1 170721763 6111539 complement(2872522..2873325) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2015 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 2873325 6111539 PputW619_2588 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001749451.1 2872522 R 390235 CDS YP_001749452.1 170721764 6111540 complement(2873362..2874216) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2014 ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit; ABC transporter-like protein 2874216 6111540 PputW619_2589 Pseudomonas putida W619 ABC transporter-like protein YP_001749452.1 2873362 R 390235 CDS YP_001749453.1 170721765 6111541 complement(2874283..2875308) 1 NC_010501.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_A2013 putative Rieske (2Fe-2S) family oxidoreductase, large subunit; Rieske (2Fe-2S) domain-containing protein 2875308 6111541 PputW619_2590 Pseudomonas putida W619 Rieske (2Fe-2S) domain-containing protein YP_001749453.1 2874283 R 390235 CDS YP_001749454.1 170721766 6111542 complement(2875348..2876361) 1 NC_010501.1 PFAM: NMT1/THI5 like domain protein; KEGG: kpn:KPN_02033 ABC transporter, periplasmic binding component-related protein; NMT1/THI5-like domain-containing protein 2876361 6111542 PputW619_2591 Pseudomonas putida W619 NMT1/THI5-like domain-containing protein YP_001749454.1 2875348 R 390235 CDS YP_001749455.1 170721767 6111543 2877008..2877814 1 NC_010501.1 KEGG: psa:PST_2862 nucleoside-binding outer membrane protein; nucleoside-binding outer membrane protein 2877814 6111543 PputW619_2592 Pseudomonas putida W619 nucleoside-binding outer membrane protein YP_001749455.1 2877008 D 390235 CDS YP_001749456.1 170721768 6111544 2878019..2879641 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_5389 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2879641 6111544 PputW619_2593 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749456.1 2878019 D 390235 CDS YP_001749457.1 170721769 6111545 2879730..2879963 1 NC_010501.1 KEGG: psa:PST_0566 hypothetical protein; hypothetical protein 2879963 6111545 PputW619_2594 Pseudomonas putida W619 hypothetical protein YP_001749457.1 2879730 D 390235 CDS YP_001749458.1 170721770 6111546 2880387..2880764 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pst:PSPTO_3893 glyoxalase, putative; glyoxalase/bleomycin resistance protein/dioxygenase 2880764 6111546 PputW619_2595 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001749458.1 2880387 D 390235 CDS YP_001749459.1 170721771 6111547 complement(2880938..2881579) 1 NC_010501.1 KEGG: bmu:Bmul_5287 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2881579 6111547 PputW619_2596 Pseudomonas putida W619 3-oxoacid CoA-transferase subunit B YP_001749459.1 2880938 R 390235 CDS YP_001749460.1 170721772 6111548 complement(2881588..2882280) 1 NC_010501.1 KEGG: bxe:Bxe_B0643 3-oxoadipate CoA-transferase subunit A (PcaI); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2882280 6111548 PputW619_2597 Pseudomonas putida W619 3-oxoacid CoA-transferase subunit A YP_001749460.1 2881588 R 390235 CDS YP_001749461.1 170721773 6111549 complement(2882711..2883052) 1 NC_010501.1 KEGG: mmw:Mmwyl1_1944 hypothetical protein; hypothetical protein 2883052 6111549 PputW619_2598 Pseudomonas putida W619 hypothetical protein YP_001749461.1 2882711 R 390235 CDS YP_001749462.1 170721774 6111550 complement(2883297..2884244) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator 2884244 6111550 PputW619_2599 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749462.1 2883297 R 390235 CDS YP_001749463.1 170721775 6111551 2884528..2885493 1 NC_010501.1 PFAM: dienelactone hydrolase; KEGG: pst:PSPTO_1580 hypothetical protein; dienelactone hydrolase 2885493 6111551 PputW619_2600 Pseudomonas putida W619 dienelactone hydrolase YP_001749463.1 2884528 D 390235 CDS YP_001749464.1 170721776 6111552 2885572..2886786 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6467 major facilitator superfamily MFS_1; major facilitator transporter 2886786 6111552 PputW619_2601 Pseudomonas putida W619 major facilitator transporter YP_001749464.1 2885572 D 390235 CDS YP_001749465.1 170721777 6111553 complement(2886836..2887108) 1 NC_010501.1 KEGG: pen:PSEEN2766 hypothetical protein; hypothetical protein 2887108 6111553 PputW619_2602 Pseudomonas putida W619 hypothetical protein YP_001749465.1 2886836 R 390235 CDS YP_001749466.1 170721778 6111554 complement(2887165..2887707) 1 NC_010501.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase 2887707 6111554 PputW619_2603 Pseudomonas putida W619 PfpI family intracellular peptidase YP_001749466.1 2887165 R 390235 CDS YP_001749467.1 170721779 6111555 complement(2887786..2889111) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_2360 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2889111 6111555 PputW619_2604 Pseudomonas putida W619 short chain dehydrogenase YP_001749467.1 2887786 R 390235 CDS YP_001749468.1 170721780 6111556 complement(2889211..2889510) 1 NC_010501.1 hypothetical protein 2889510 6111556 PputW619_2605 Pseudomonas putida W619 hypothetical protein YP_001749468.1 2889211 R 390235 CDS YP_001749469.1 170721781 6111557 2889786..2890769 1 NC_010501.1 PFAM: Integral membrane protein TerC; KEGG: pau:PA14_31610 putative membrane protein, TerC family; integral membrane protein TerC 2890769 6111557 PputW619_2606 Pseudomonas putida W619 integral membrane protein TerC YP_001749469.1 2889786 D 390235 CDS YP_001749470.1 170721782 6111558 complement(2891022..2891318) 1 NC_010501.1 PFAM: transcriptional regulator domain protein; KEGG: bch:Bcen2424_4616 two component transcriptional regulator, winged helix family; winged helix family two component response transcriptional regulator 2891318 6111558 PputW619_2607 Pseudomonas putida W619 winged helix family two component response transcriptional regulator YP_001749470.1 2891022 R 390235 CDS YP_001749471.1 170721783 6111559 complement(2891358..2891993) 1 NC_010501.1 cofactor involved in the reduction of disulfides; glutaredoxin 2891993 6111559 PputW619_2608 Pseudomonas putida W619 glutaredoxin YP_001749471.1 2891358 R 390235 CDS YP_001749472.1 170721784 6111560 complement(2892033..2892785) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_10840 putative dehydrogenase; short-chain dehydrogenase/reductase SDR 2892785 6111560 PputW619_2609 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749472.1 2892033 R 390235 CDS YP_001749473.1 170721785 6111561 complement(2892845..2894875) 1 NC_010501.1 PFAM: Pyrrolo-quinoline quinone; KEGG: rsh:Rsph17029_3539 quinoprotein glucose dehydrogenase; Pyrrolo-quinoline quinone 2894875 6111561 PputW619_2610 Pseudomonas putida W619 Pyrrolo-quinoline quinone YP_001749473.1 2892845 R 390235 CDS YP_001749474.1 170721786 6111562 complement(2894887..2895291) 1 NC_010501.1 KEGG: rsh:Rsph17029_3538 glucose dehydrogenase-like protein; glucose dehydrogenase 2895291 6111562 PputW619_2611 Pseudomonas putida W619 glucose dehydrogenase YP_001749474.1 2894887 R 390235 CDS YP_001749475.1 170721787 6111563 complement(2895323..2896624) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: gox:GOX0208 putative glucarate/galactarate transporter; major facilitator transporter 2896624 6111563 PputW619_2612 Pseudomonas putida W619 major facilitator transporter YP_001749475.1 2895323 R 390235 CDS YP_001749476.1 170721788 6111564 complement(2896755..2897756) 1 NC_010501.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: reu:Reut_B4778 transketolase, central region:transketolase, C-terminal; transketolase central region 2897756 6111564 PputW619_2613 Pseudomonas putida W619 transketolase central region YP_001749476.1 2896755 R 390235 CDS YP_001749477.1 170721789 6111565 complement(2897753..2898610) 1 NC_010501.1 PFAM: Transketolase domain protein; KEGG: dac:Daci_0728 transketolase domain protein; transketolase domain-containing protein 2898610 6111565 PputW619_2614 Pseudomonas putida W619 transketolase domain-containing protein YP_001749477.1 2897753 R 390235 CDS YP_001749478.1 170721790 6111566 2898761..2899645 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ecj:JW0244 predicted DNA-binding transcriptional regulator; LysR family transcriptional regulator 2899645 6111566 PputW619_2615 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749478.1 2898761 D 390235 CDS YP_001749479.1 170721791 6111567 2900008..2901402 1 NC_010501.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: cmi:CMM_2217 putative gamma-aminobutyrate permease, APC family; amino acid permease-associated protein 2901402 6111567 PputW619_2616 Pseudomonas putida W619 amino acid permease-associated protein YP_001749479.1 2900008 D 390235 CDS YP_001749480.1 170721792 6111568 2901461..2902843 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: nca:Noca_3231 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2902843 6111568 PputW619_2617 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001749480.1 2901461 D 390235 CDS YP_001749481.1 170721793 6111569 2902859..2903209 1 NC_010501.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll2946 hypothetical protein; hypothetical protein 2903209 6111569 PputW619_2618 Pseudomonas putida W619 hypothetical protein YP_001749481.1 2902859 D 390235 CDS YP_001749482.1 170721794 6111570 2903273..2904841 1 NC_010501.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2904841 6111570 PputW619_2619 Pseudomonas putida W619 methylmalonate-semialdehyde dehydrogenase YP_001749482.1 2903273 D 390235 CDS YP_001749483.1 170721795 6111572 complement(2907681..2908253) 1 NC_010501.1 hypothetical protein 2908253 6111572 PputW619_2621 Pseudomonas putida W619 hypothetical protein YP_001749483.1 2907681 R 390235 CDS YP_001749484.1 170721796 6111574 complement(2908670..2909674) 1 NC_010501.1 TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator 2909674 6111574 PputW619_2623 Pseudomonas putida W619 PaaX family transcriptional regulator YP_001749484.1 2908670 R 390235 CDS YP_001749485.1 170721797 6111575 complement(2909671..2910270) 1 NC_010501.1 TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: pen:PSEEN2790 regulatory PhaM protein; phenylacetic acid degradation protein PaaY 2910270 6111575 PputW619_2624 Pseudomonas putida W619 phenylacetic acid degradation protein PaaY YP_001749485.1 2909671 R 390235 CDS YP_001749486.1 170721798 6111576 2910617..2911390 1 NC_010501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2791 enoyl-CoA hydratase/isomerase PhaA; enoyl-CoA hydratase-isomerase 2911390 6111576 PputW619_2625 Pseudomonas putida W619 enoyl-CoA hydratase-isomerase YP_001749486.1 2910617 D 390235 CDS YP_001749487.1 170721799 6111577 2911428..2912219 1 NC_010501.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2912219 6111577 PputW619_2626 Pseudomonas putida W619 enoyl-CoA hydratase YP_001749487.1 2911428 D 390235 CDS YP_001749488.1 170721800 6111578 2912221..2913738 1 NC_010501.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2913738 6111578 PputW619_2627 Pseudomonas putida W619 3-hydroxyacyl-CoA dehydrogenase YP_001749488.1 2912221 D 390235 CDS YP_001749489.1 170721801 6111579 2913731..2914186 1 NC_010501.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein; phenylacetic acid degradation protein PaaD 2914186 6111579 PputW619_2628 Pseudomonas putida W619 phenylacetic acid degradation protein PaaD YP_001749489.1 2913731 D 390235 CDS YP_001749490.1 170721802 6111580 2914179..2915399 1 NC_010501.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2915399 6111580 PputW619_2629 Pseudomonas putida W619 beta-ketoadipyl CoA thiolase YP_001749490.1 2914179 D 390235 CDS YP_001749491.1 170721803 6111581 2915506..2916825 1 NC_010501.1 TIGRFAM: phenylacetate-CoA ligase; KEGG: pen:PSEEN2796 phenylacetyl-CoA ligase; phenylacetate-CoA ligase 2916825 6111581 PputW619_2630 Pseudomonas putida W619 phenylacetate-CoA ligase YP_001749491.1 2915506 D 390235 CDS YP_001749492.1 170721804 6111582 2917309..2918298 1 NC_010501.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2918298 paaA 6111582 paaA Pseudomonas putida W619 phenylacetate-CoA oxygenase subunit PaaA YP_001749492.1 2917309 D 390235 CDS YP_001749493.1 170721805 6111583 2918324..2918605 1 NC_010501.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2918605 paaB 6111583 paaB Pseudomonas putida W619 phenylacetate-CoA oxygenase subunit PaaB YP_001749493.1 2918324 D 390235 CDS YP_001749494.1 170721806 6111584 2918614..2919372 1 NC_010501.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pen:PSEEN2800 phenylacetic acid degradation, subunit of multicomponent oxygenase; phenylacetate-CoA oxygenase subunit PaaI 2919372 6111584 PputW619_2633 Pseudomonas putida W619 phenylacetate-CoA oxygenase subunit PaaI YP_001749494.1 2918614 D 390235 CDS YP_001749495.1 170721807 6111585 2919359..2919892 1 NC_010501.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN2801 ring-hydroxylation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ 2919892 6111585 PputW619_2634 Pseudomonas putida W619 phenylacetate-CoA oxygenase subunit PaaJ YP_001749495.1 2919359 D 390235 CDS YP_001749496.1 170721808 6111586 2919908..2920984 1 NC_010501.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2802 ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK 2920984 6111586 PputW619_2635 Pseudomonas putida W619 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_001749496.1 2919908 D 390235 CDS YP_001749497.1 170721809 6111587 2921067..2921375 1 NC_010501.1 PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN2803 hypothetical protein; hypothetical protein 2921375 6111587 PputW619_2636 Pseudomonas putida W619 hypothetical protein YP_001749497.1 2921067 D 390235 CDS YP_001749498.1 170721810 6111588 2921372..2922934 1 NC_010501.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2922934 6111588 PputW619_2637 Pseudomonas putida W619 acetate permease YP_001749498.1 2921372 D 390235 CDS YP_001749499.1 170721811 6111589 2922967..2924199 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN2805 phenylacetic acid-specific porin; outer membrane porin 2924199 6111589 PputW619_2638 Pseudomonas putida W619 outer membrane porin YP_001749499.1 2922967 D 390235 CDS YP_001749500.1 170721812 6111590 2924224..2926275 1 NC_010501.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2926275 6111590 PputW619_2639 Pseudomonas putida W619 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_001749500.1 2924224 D 390235 CDS YP_001749501.1 170721813 6111591 complement(2926637..2926906) 1 NC_010501.1 KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein 2926906 6111591 PputW619_2640 Pseudomonas putida W619 hypothetical protein YP_001749501.1 2926637 R 390235 CDS YP_001749502.1 170721814 6111592 complement(2927008..2928198) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1875 glutathione-dependent formaldehyde dehydrogenase; alcohol dehydrogenase 2928198 6111592 PputW619_2641 Pseudomonas putida W619 alcohol dehydrogenase YP_001749502.1 2927008 R 390235 CDS YP_001749503.1 170721815 6111593 complement(2928271..2928483) 1 NC_010501.1 KEGG: pmy:Pmen_2359 hypothetical protein; hypothetical protein 2928483 6111593 PputW619_2642 Pseudomonas putida W619 hypothetical protein YP_001749503.1 2928271 R 390235 CDS YP_001749504.1 170721816 6111594 complement(2928653..2929204) 1 NC_010501.1 PFAM: peptidase S14 ClpP; KEGG: pen:PSEEN3077 clp protease (protease subunit); peptidase S14 ClpP 2929204 6111594 PputW619_2643 Pseudomonas putida W619 peptidase S14 ClpP YP_001749504.1 2928653 R 390235 CDS YP_001749505.1 170721817 6111595 2929406..2930323 1 NC_010501.1 PFAM: protein of unknown function DUF72; KEGG: psa:PST_2148 hypothetical protein; hypothetical protein 2930323 6111595 PputW619_2644 Pseudomonas putida W619 hypothetical protein YP_001749505.1 2929406 D 390235 CDS YP_001749506.1 170721818 6111596 2930320..2931105 1 NC_010501.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN3079 DNase with DNase I-like domain; endonuclease/exonuclease/phosphatase 2931105 6111596 PputW619_2645 Pseudomonas putida W619 endonuclease/exonuclease/phosphatase YP_001749506.1 2930320 D 390235 CDS YP_001749507.1 170721819 6111597 2931102..2932304 1 NC_010501.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN3080 phospholipase (biosynthetic); cardiolipin synthase 2 2932304 6111597 PputW619_2646 Pseudomonas putida W619 cardiolipin synthase 2 YP_001749507.1 2931102 D 390235 CDS YP_001749508.1 170721820 6111598 2932304..2933263 1 NC_010501.1 KEGG: pen:PSEEN3081 hypothetical protein; hypothetical protein 2933263 6111598 PputW619_2647 Pseudomonas putida W619 hypothetical protein YP_001749508.1 2932304 D 390235 CDS YP_001749509.1 170721821 6111599 2933293..2933721 1 NC_010501.1 KEGG: pmy:Pmen_2289 hypothetical protein; hypothetical protein 2933721 6111599 PputW619_2648 Pseudomonas putida W619 hypothetical protein YP_001749509.1 2933293 D 390235 CDS YP_001749510.1 170721822 6111600 complement(2933806..2934036) 1 NC_010501.1 KEGG: pen:PSEEN2769 metallothionein; metallothionein 2934036 6111600 PputW619_2649 Pseudomonas putida W619 metallothionein YP_001749510.1 2933806 R 390235 CDS YP_001749511.1 170721823 6111601 complement(2934039..2934491) 1 NC_010501.1 KEGG: pen:PSEEN2768 hypothetical protein; hypothetical protein 2934491 6111601 PputW619_2650 Pseudomonas putida W619 hypothetical protein YP_001749511.1 2934039 R 390235 CDS YP_001749512.1 170721824 6111602 2934643..2937141 1 NC_010501.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2937141 ligD 6111602 ligD Pseudomonas putida W619 ATP-dependent DNA ligase YP_001749512.1 2934643 D 390235 CDS YP_001749513.1 170721825 6111603 2937138..2938181 1 NC_010501.1 KEGG: pen:PSEEN2765 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2938181 6111603 PputW619_2652 Pseudomonas putida W619 acyl-CoA dehydrogenase YP_001749513.1 2937138 D 390235 CDS YP_001749514.1 170721826 6111604 2938178..2938933 1 NC_010501.1 PFAM: LmbE family protein; KEGG: pen:PSEEN2764 hypothetical protein; LmbE family protein 2938933 6111604 PputW619_2653 Pseudomonas putida W619 LmbE family protein YP_001749514.1 2938178 D 390235 CDS YP_001749515.1 170721827 6111605 2938944..2939543 1 NC_010501.1 PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2763 methyltransferase; type 12 methyltransferase 2939543 6111605 PputW619_2654 Pseudomonas putida W619 type 12 methyltransferase YP_001749515.1 2938944 D 390235 CDS YP_001749516.1 170721828 6111606 2939534..2940205 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2762 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 2940205 6111606 PputW619_2655 Pseudomonas putida W619 glycosyl transferase family protein YP_001749516.1 2939534 D 390235 CDS YP_001749517.1 170721829 6111607 complement(2940294..2941142) 1 NC_010501.1 TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: pen:PSEEN2761 Ku protein; Ku protein 2941142 6111607 PputW619_2656 Pseudomonas putida W619 Ku protein YP_001749517.1 2940294 R 390235 CDS YP_001749518.1 170721830 6111608 complement(2941413..2942003) 1 NC_010501.1 KEGG: fjo:Fjoh_3241 nucleoside phosphorylase-like protein; nucleoside phosphorylase-like protein 2942003 6111608 PputW619_2657 Pseudomonas putida W619 nucleoside phosphorylase-like protein YP_001749518.1 2941413 R 390235 CDS YP_001749519.1 170721831 6111609 complement(2942103..2943056) 1 NC_010501.1 PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small 2943056 6111609 PputW619_2658 Pseudomonas putida W619 methyltransferase small YP_001749519.1 2942103 R 390235 CDS YP_001749520.1 170721832 6111610 complement(2943056..2944390) 1 NC_010501.1 KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein 2944390 6111610 PputW619_2659 Pseudomonas putida W619 hypothetical protein YP_001749520.1 2943056 R 390235 CDS YP_001749521.1 170721833 6111611 complement(2944672..2944890) 1 NC_010501.1 KEGG: pen:PSEEN3087 hypothetical protein; hypothetical protein 2944890 6111611 PputW619_2660 Pseudomonas putida W619 hypothetical protein YP_001749521.1 2944672 R 390235 CDS YP_001749522.1 170721834 6111612 complement(2945001..2946320) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: mfa:Mfla_1799 major facilitator superfamily MFS_1; major facilitator transporter 2946320 6111612 PputW619_2661 Pseudomonas putida W619 major facilitator transporter YP_001749522.1 2945001 R 390235 CDS YP_001749523.1 170721835 6111613 complement(2946325..2947233) 1 NC_010501.1 PFAM: aldo/keto reductase; KEGG: mfa:Mfla_1798 twin-arginine translocation pathway signal; aldo/keto reductase 2947233 6111613 PputW619_2662 Pseudomonas putida W619 aldo/keto reductase YP_001749523.1 2946325 R 390235 CDS YP_001749524.1 170721836 6111614 complement(2947323..2948204) 1 NC_010501.1 TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pen:PSEEN3113 Dyp-type peroxidase; Dyp-type peroxidase family protein 2948204 6111614 PputW619_2663 Pseudomonas putida W619 Dyp-type peroxidase family protein YP_001749524.1 2947323 R 390235 CDS YP_001749525.1 170721837 6111615 2948397..2949296 1 NC_010501.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3114 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 2949296 6111615 PputW619_2664 Pseudomonas putida W619 bile acid:sodium symporter YP_001749525.1 2948397 D 390235 CDS YP_001749526.1 170721838 6111616 complement(2949302..2949769) 1 NC_010501.1 PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN3115 beta-carotene hydroxylase; fatty acid hydroxylase 2949769 6111616 PputW619_2665 Pseudomonas putida W619 fatty acid hydroxylase YP_001749526.1 2949302 R 390235 CDS YP_001749527.1 170721839 6111617 2950179..2950892 1 NC_010501.1 PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN3117 magnesium transporter, MgtC family; MgtC/SapB transporter 2950892 6111617 PputW619_2666 Pseudomonas putida W619 MgtC/SapB transporter YP_001749527.1 2950179 D 390235 CDS YP_001749528.1 170721840 6111618 complement(2950905..2952473) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3122 diguanylate cyclase (GGDEF domain); diguanylate cyclase 2952473 6111618 PputW619_2667 Pseudomonas putida W619 diguanylate cyclase YP_001749528.1 2950905 R 390235 CDS YP_001749529.1 170721841 6111619 complement(2952528..2953310) 1 NC_010501.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl_1868 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth 2953310 6111619 PputW619_2668 Pseudomonas putida W619 exodeoxyribonuclease III Xth YP_001749529.1 2952528 R 390235 CDS YP_001749530.1 170721842 6111620 complement(2953307..2953549) 1 NC_010501.1 KEGG: pfo:Pfl_2029 hypothetical protein; hypothetical protein 2953549 6111620 PputW619_2669 Pseudomonas putida W619 hypothetical protein YP_001749530.1 2953307 R 390235 CDS YP_001749531.1 170721843 6111621 2953733..2954233 1 NC_010501.1 KEGG: pfl:PFL_4730 lipoprotein, putative; putative lipoprotein 2954233 6111621 PputW619_2670 Pseudomonas putida W619 putative lipoprotein YP_001749531.1 2953733 D 390235 CDS YP_001749532.1 170721844 6111622 2954247..2954498 1 NC_010501.1 KEGG: pfo:Pfl_4133 hypothetical protein; hypothetical protein 2954498 6111622 PputW619_2671 Pseudomonas putida W619 hypothetical protein YP_001749532.1 2954247 D 390235 CDS YP_001749533.1 170721845 6111623 complement(2954577..2955557) 1 NC_010501.1 KEGG: pen:PSEEN2808 Tn4652 cointegrate resolution protein T; Tn4652 cointegrate resolution protein T 2955557 6111623 PputW619_2672 Pseudomonas putida W619 Tn4652 cointegrate resolution protein T YP_001749533.1 2954577 R 390235 CDS YP_001749534.1 170721846 6111624 2955837..2956451 1 NC_010501.1 PFAM: YheO domain protein; KEGG: pen:PSEEN5014 hypothetical protein; YheO domain-containing protein 2956451 6111624 PputW619_2673 Pseudomonas putida W619 YheO domain-containing protein YP_001749534.1 2955837 D 390235 CDS YP_001749535.1 170721847 6111625 2956528..2957505 1 NC_010501.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN5013 threonine dehydratase; hypothetical protein 2957505 6111625 PputW619_2674 Pseudomonas putida W619 hypothetical protein YP_001749535.1 2956528 D 390235 CDS YP_001749536.1 170721848 6111626 2957502..2958452 1 NC_010501.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2958452 6111626 PputW619_2675 Pseudomonas putida W619 ornithine cyclodeaminase YP_001749536.1 2957502 D 390235 CDS YP_001749537.1 170721849 6111627 complement(2958476..2960224) 1 NC_010501.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: nca:Noca_2609 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter 2960224 6111627 PputW619_2676 Pseudomonas putida W619 choline/carnitine/betaine transporter YP_001749537.1 2958476 R 390235 CDS YP_001749538.1 170721850 6111628 complement(2960440..2961099) 1 NC_010501.1 PFAM: TENA/THI-4 domain protein; KEGG: nwi:Nwi_0858 TenA/THI-4 protein; TenA family transcriptional regulator 2961099 6111628 PputW619_2677 Pseudomonas putida W619 TenA family transcriptional regulator YP_001749538.1 2960440 R 390235 CDS YP_001749539.1 170721851 6111629 complement(2961102..2961749) 1 NC_010501.1 PFAM: TENA/THI-4 domain protein; KEGG: pde:Pden_3673 transcriptional activator, TenA family; TenA family transcriptional regulator 2961749 6111629 PputW619_2678 Pseudomonas putida W619 TenA family transcriptional regulator YP_001749539.1 2961102 R 390235 CDS YP_001749540.1 170721852 6111630 2962126..2964453 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2876 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2964453 6111630 PputW619_2679 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001749540.1 2962126 D 390235 CDS YP_001749541.1 170721853 6111631 2964544..2965494 1 NC_010501.1 PFAM: integrase family protein; KEGG: pap:PSPA7_3058 cointegrate resolution protein S; integrase family protein 2965494 6111631 PputW619_2680 Pseudomonas putida W619 integrase family protein YP_001749541.1 2964544 D 390235 CDS YP_001749542.1 170721854 6111632 complement(2965484..2967208) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; SMP-30/Gluconolaconase/LRE domain protein; KEGG: ent:Ent638_1528 short-chain dehydrogenase/reductase SDR; SMP-30/gluconolaconase/LRE domain-containing protein 2967208 6111632 PputW619_2681 Pseudomonas putida W619 SMP-30/gluconolaconase/LRE domain-containing protein YP_001749542.1 2965484 R 390235 CDS YP_001749543.1 170721855 6111633 2967479..2968450 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2968450 6111633 PputW619_2682 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749543.1 2967479 D 390235 CDS YP_001749544.1 170721856 6111634 complement(2968439..2970274) 1 NC_010501.1 KEGG: pau:PA14_00640 potential phenazine-modifying enzyme; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 2970274 6111634 PputW619_2683 Pseudomonas putida W619 asparagine synthase YP_001749544.1 2968439 R 390235 CDS YP_001749545.1 170721857 6111635 complement(2970285..2971670) 1 NC_010501.1 PFAM: Amidase; KEGG: mes:Meso_2714 amidase; amidase 2971670 6111635 PputW619_2684 Pseudomonas putida W619 amidase YP_001749545.1 2970285 R 390235 CDS YP_001749546.1 170721858 6111636 complement(2971667..2972653) 1 NC_010501.1 KEGG: aha:AHA_3393 acyl-coenzyme A synthetase; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein 2972653 6111636 PputW619_2685 Pseudomonas putida W619 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein YP_001749546.1 2971667 R 390235 CDS YP_001749547.1 170721859 6111637 complement(2972650..2972934) 1 NC_010501.1 hypothetical protein 2972934 6111637 PputW619_2686 Pseudomonas putida W619 hypothetical protein YP_001749547.1 2972650 R 390235 CDS YP_001749548.1 170721860 6111638 complement(2972931..2973338) 1 NC_010501.1 hypothetical protein 2973338 6111638 PputW619_2687 Pseudomonas putida W619 hypothetical protein YP_001749548.1 2972931 R 390235 CDS YP_001749549.1 170721861 6111639 complement(2973348..2975063) 1 NC_010501.1 PFAM: Prenyltransferase/squalene oxidase; KEGG: pen:PSEEN4746 protein farnesyltransferase; prenyltransferase/squalene oxidase 2975063 6111639 PputW619_2688 Pseudomonas putida W619 prenyltransferase/squalene oxidase YP_001749549.1 2973348 R 390235 CDS YP_001749550.1 170721862 6111640 complement(2975060..2976376) 1 NC_010501.1 KEGG: stp:Strop_1038 hypothetical protein; coenzyme F390 synthetase-like protein 2976376 6111640 PputW619_2689 Pseudomonas putida W619 coenzyme F390 synthetase-like protein YP_001749550.1 2975060 R 390235 CDS YP_001749551.1 170721863 6111641 complement(2976739..2977878) 1 NC_010501.1 PFAM: glycerate kinase; KEGG: pen:PSEEN2878 glycerate kinase; glycerate kinase 2977878 6111641 PputW619_2690 Pseudomonas putida W619 glycerate kinase YP_001749551.1 2976739 R 390235 CDS YP_001749552.1 170721864 6111642 complement(2977991..2979088) 1 NC_010501.1 PFAM: sugar diacid recognition domain protein; KEGG: pen:PSEEN2879 sugar diacid utilization regulator; transcriptional regulator CdaR 2979088 6111642 PputW619_2691 Pseudomonas putida W619 transcriptional regulator CdaR YP_001749552.1 2977991 R 390235 CDS YP_001749553.1 170721865 6111643 2979252..2980580 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator transporter 2980580 6111643 PputW619_2692 Pseudomonas putida W619 major facilitator transporter YP_001749553.1 2979252 D 390235 CDS YP_001749554.1 170721866 6111644 2980706..2982226 1 NC_010501.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN3126 ferredoxin reductase component; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2982226 6111644 PputW619_2693 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001749554.1 2980706 D 390235 CDS YP_001749555.1 170721867 6111645 2982319..2984232 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 2984232 6111645 PputW619_2694 Pseudomonas putida W619 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001749555.1 2982319 D 390235 CDS YP_001749556.1 170721868 6111646 complement(2984312..2985745) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: dac:Daci_0293 aldehyde dehydrogenase; aldehyde dehydrogenase 2985745 6111646 PputW619_2695 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749556.1 2984312 R 390235 CDS YP_001749557.1 170721869 6111647 complement(2985753..2987933) 1 NC_010501.1 KEGG: azo:azo3022 putative quinoprotein ethanol dehydrogenase; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; methanol/ethanol family PQQ-dependent dehydrogenase 2987933 6111647 PputW619_2696 Pseudomonas putida W619 methanol/ethanol family PQQ-dependent dehydrogenase YP_001749557.1 2985753 R 390235 CDS YP_001749558.1 170721870 6111648 2988271..2989368 1 NC_010501.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 2989368 6111648 PputW619_2697 Pseudomonas putida W619 N-ethylmaleimide reductase YP_001749558.1 2988271 D 390235 CDS YP_001749559.1 170721871 6111649 complement(2989453..2990364) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3132 transcriptional regulator, LysR family; LysR family transcriptional regulator 2990364 6111649 PputW619_2698 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749559.1 2989453 R 390235 CDS YP_001749560.1 170721872 6111650 complement(2990432..2991133) 1 NC_010501.1 PFAM: TraX family protein; KEGG: pmy:Pmen_2245 TraX family protein; TraX family protein 2991133 6111650 PputW619_2699 Pseudomonas putida W619 TraX family protein YP_001749560.1 2990432 R 390235 CDS YP_001749561.1 170721873 6111651 complement(2991137..2992222) 1 NC_010501.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: pen:PSEEN3133 membrane bound hydrolase; membrane-bound metal-dependent hydrolase 2992222 6111651 PputW619_2700 Pseudomonas putida W619 membrane-bound metal-dependent hydrolase YP_001749561.1 2991137 R 390235 CDS YP_001749562.1 170721874 6111652 complement(2992318..2993568) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN3134 benzoate-specific porin; outer membrane porin 2993568 6111652 PputW619_2701 Pseudomonas putida W619 outer membrane porin YP_001749562.1 2992318 R 390235 CDS YP_001749563.1 170721875 6111653 complement(2993622..2994821) 1 NC_010501.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: pen:PSEEN3135 benzoate membrane transport protein MFS superfamily); benzoate transporter 2994821 6111653 PputW619_2702 Pseudomonas putida W619 benzoate transporter YP_001749563.1 2993622 R 390235 CDS YP_001749564.1 170721876 6111654 complement(2994953..2995867) 1 NC_010501.1 TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase 2995867 6111654 PputW619_2703 Pseudomonas putida W619 catechol 1,2-dioxygenase YP_001749564.1 2994953 R 390235 CDS YP_001749565.1 170721877 6111655 complement(2995907..2996197) 1 NC_010501.1 KEGG: pen:PSEEN3137 muconolactone delta-isomerase (MIase); TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase 2996197 6111655 PputW619_2704 Pseudomonas putida W619 muconolactone delta-isomerase YP_001749565.1 2995907 R 390235 CDS YP_001749566.1 170721878 6111656 complement(2996216..2997337) 1 NC_010501.1 TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pen:PSEEN3138 muconate cycloisomerase I (cis,cis-muconate lactonizing enzyme I) (MLE); muconate and chloromuconate cycloisomerase 2997337 6111656 PputW619_2705 Pseudomonas putida W619 muconate and chloromuconate cycloisomerase YP_001749566.1 2996216 R 390235 CDS YP_001749567.1 170721879 6111657 complement(2997367..2998689) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3139 benzoate transport protein (MFS superfamily); major facilitator transporter 2998689 6111657 PputW619_2706 Pseudomonas putida W619 major facilitator transporter YP_001749567.1 2997367 R 390235 CDS YP_001749568.1 170721880 6111658 complement(2998744..2999505) 1 NC_010501.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase 2999505 benD 6111658 benD Pseudomonas putida W619 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase YP_001749568.1 2998744 R 390235 CDS YP_001749569.1 170721881 6111659 complement(2999674..3000687) 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3141 benzoate 1,2-dioxygenase electron transfer component includes: ferredoxin; ferredoxin--NAD(+) reductase; oxidoreductase FAD/NAD(P)-binding subunit 3000687 6111659 PputW619_2708 Pseudomonas putida W619 oxidoreductase FAD/NAD(P)-binding subunit YP_001749569.1 2999674 R 390235 CDS YP_001749570.1 170721882 6111660 complement(3000758..3001243) 1 NC_010501.1 KEGG: pen:PSEEN3142 benzoate 1,2-dioxygenase beta subunit; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; benzoate 1,2-dioxygenase small subunit 3001243 6111660 PputW619_2709 Pseudomonas putida W619 benzoate 1,2-dioxygenase small subunit YP_001749570.1 3000758 R 390235 CDS YP_001749571.1 170721883 6111661 complement(3001240..3002598) 1 NC_010501.1 TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pen:PSEEN3143 benzoate 1,2-dioxygenase alpha subunit; benzoate 1,2-dioxygenase large subunit 3002598 6111661 PputW619_2710 Pseudomonas putida W619 benzoate 1,2-dioxygenase large subunit YP_001749571.1 3001240 R 390235 CDS YP_001749572.1 170721884 6111662 3003250..3004311 1 NC_010501.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3004311 6111662 PputW619_2711 Pseudomonas putida W619 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001749572.1 3003250 D 390235 CDS YP_001749573.1 170721885 6111663 3004391..3004672 1 NC_010501.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3151 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3004672 6111663 PputW619_2712 Pseudomonas putida W619 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001749573.1 3004391 D 390235 CDS YP_001749574.1 170721886 6111664 3004785..3006611 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3152 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3006611 6111664 PputW619_2713 Pseudomonas putida W619 extracellular solute-binding protein YP_001749574.1 3004785 D 390235 CDS YP_001749575.1 170721887 6111665 3006608..3007666 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3153 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3007666 6111665 PputW619_2714 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001749575.1 3006608 D 390235 CDS YP_001749576.1 170721888 6111666 3007666..3008682 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3154 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3008682 6111666 PputW619_2715 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001749576.1 3007666 D 390235 CDS YP_001749577.1 170721889 6111667 3008719..3010101 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3155 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 3010101 6111667 PputW619_2716 Pseudomonas putida W619 putative sigma-54 specific transcriptional regulator YP_001749577.1 3008719 D 390235 CDS YP_001749578.1 170721890 6111668 3010324..3011715 1 NC_010501.1 PFAM: Citrate transporter; KEGG: pen:PSEEN3157 hypothetical protein; citrate transporter 3011715 6111668 PputW619_2717 Pseudomonas putida W619 citrate transporter YP_001749578.1 3010324 D 390235 CDS YP_001749579.1 170721891 6111669 3011726..3012496 1 NC_010501.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3012496 6111669 PputW619_2718 Pseudomonas putida W619 3-hydroxybutyrate dehydrogenase YP_001749579.1 3011726 D 390235 CDS YP_001749580.1 170721892 6111670 3012552..3013031 1 NC_010501.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3013031 6111670 PputW619_2719 Pseudomonas putida W619 ecotin YP_001749580.1 3012552 D 390235 CDS YP_001749581.1 170721893 6111671 3013103..3015064 1 NC_010501.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3015064 6111671 PputW619_2720 Pseudomonas putida W619 acetoacetyl-CoA synthetase YP_001749581.1 3013103 D 390235 CDS YP_001749582.1 170721894 6111672 3015101..3015376 1 NC_010501.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3160 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3015376 6111672 PputW619_2721 Pseudomonas putida W619 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001749582.1 3015101 D 390235 CDS YP_001749583.1 170721895 6111673 complement(3015386..3016009) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3162 transporter, LysE family; lysine exporter protein LysE/YggA 3016009 6111673 PputW619_2722 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749583.1 3015386 R 390235 CDS YP_001749584.1 170721896 6111674 3016141..3016962 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3163 transcriptional regulator, AraC family; AraC family transcriptional regulator 3016962 6111674 PputW619_2723 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749584.1 3016141 D 390235 CDS YP_001749585.1 170721897 6111675 3017050..3017664 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA 3017664 6111675 PputW619_2724 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749585.1 3017050 D 390235 CDS YP_001749586.1 170721898 6111676 complement(3017645..3018337) 1 NC_010501.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; metallophosphoesterase 3018337 6111676 PputW619_2725 Pseudomonas putida W619 metallophosphoesterase YP_001749586.1 3017645 R 390235 CDS YP_001749587.1 170721899 6111677 3018579..3019322 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rca:Rcas_0871 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3019322 6111677 PputW619_2726 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001749587.1 3018579 D 390235 CDS YP_001749588.1 170721900 6111678 3019319..3019561 1 NC_010501.1 KEGG: pen:PSEEN3168 hypothetical protein; hypothetical protein 3019561 6111678 PputW619_2727 Pseudomonas putida W619 hypothetical protein YP_001749588.1 3019319 D 390235 CDS YP_001749589.1 170721901 6111679 complement(3019603..3020103) 1 NC_010501.1 KEGG: pen:PSEEN3169 methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase); TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 3020103 6111679 PputW619_2728 Pseudomonas putida W619 methylated-DNA--protein-cysteine methyltransferase YP_001749589.1 3019603 R 390235 CDS YP_001749590.1 170721902 6111680 complement(3020189..3020977) 1 NC_010501.1 KEGG: psb:Psyr_2496 lipopolysaccharide core biosynthesis domain protein; lipopolysaccharide core biosynthesis domain-containing protein 3020977 6111680 PputW619_2729 Pseudomonas putida W619 lipopolysaccharide core biosynthesis domain-containing protein YP_001749590.1 3020189 R 390235 CDS YP_001749591.1 170721903 6111681 3021175..3021372 1 NC_010501.1 hypothetical protein 3021372 6111681 PputW619_2730 Pseudomonas putida W619 hypothetical protein YP_001749591.1 3021175 D 390235 CDS YP_001749592.1 170721904 6111682 complement(3021406..3021774) 1 NC_010501.1 KEGG: pfo:Pfl_3288 hypothetical protein; hypothetical protein 3021774 6111682 PputW619_2731 Pseudomonas putida W619 hypothetical protein YP_001749592.1 3021406 R 390235 CDS YP_001749593.1 170721905 6111683 complement(3021844..3022221) 1 NC_010501.1 KEGG: pen:PSEEN3170 hypothetical protein; hypothetical protein 3022221 6111683 PputW619_2732 Pseudomonas putida W619 hypothetical protein YP_001749593.1 3021844 R 390235 CDS YP_001749594.1 170721906 6111684 complement(3022413..3022709) 1 NC_010501.1 KEGG: syn:slr0334 hypothetical protein; hypothetical protein 3022709 6111684 PputW619_2733 Pseudomonas putida W619 hypothetical protein YP_001749594.1 3022413 R 390235 CDS YP_001749595.1 170721907 6111685 complement(3023211..3023513) 1 NC_010501.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 3023513 6111685 PputW619_2734 Pseudomonas putida W619 hypothetical protein YP_001749595.1 3023211 R 390235 CDS YP_001749596.1 170721908 6111686 3023902..3024663 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_2468 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3024663 6111686 PputW619_2735 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749596.1 3023902 D 390235 CDS YP_001749597.1 170721909 6111687 complement(3024733..3025197) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_2264 transcriptional regulator; AraC family transcriptional regulator 3025197 6111687 PputW619_2736 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749597.1 3024733 R 390235 CDS YP_001749598.1 170721910 6111688 complement(3025502..3026239) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_2903 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3026239 6111688 PputW619_2737 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749598.1 3025502 R 390235 CDS YP_001749599.1 170721911 6111689 3026561..3027469 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA2047 probable transcriptional regulator; AraC family transcriptional regulator 3027469 6111689 PputW619_2738 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749599.1 3026561 D 390235 CDS YP_001749600.1 170721912 6111690 complement(3027634..3027795) 1 NC_010501.1 KEGG: psp:PSPPH_4090 GP28; hypothetical protein 3027795 6111690 PputW619_2739 Pseudomonas putida W619 hypothetical protein YP_001749600.1 3027634 R 390235 CDS YP_001749601.1 170721913 6111691 complement(3027792..3029351) 1 NC_010501.1 KEGG: psb:Psyr_4084 hypothetical protein; hypothetical protein 3029351 6111691 PputW619_2740 Pseudomonas putida W619 hypothetical protein YP_001749601.1 3027792 R 390235 CDS YP_001749602.1 170721914 6111692 complement(3029465..3029734) 1 NC_010501.1 KEGG: psb:Psyr_4083 PaaR; hypothetical protein 3029734 6111692 PputW619_2741 Pseudomonas putida W619 hypothetical protein YP_001749602.1 3029465 R 390235 CDS YP_001749603.1 170721915 6111693 complement(3029731..3031419) 1 NC_010501.1 KEGG: pst:PSPTO_5054 hypothetical protein; hypothetical protein 3031419 6111693 PputW619_2742 Pseudomonas putida W619 hypothetical protein YP_001749603.1 3029731 R 390235 CDS YP_001749604.1 170721916 6111694 complement(3031416..3033440) 1 NC_010501.1 KEGG: psb:Psyr_4081 hypothetical protein; hypothetical protein 3033440 6111694 PputW619_2743 Pseudomonas putida W619 hypothetical protein YP_001749604.1 3031416 R 390235 CDS YP_001749605.1 170721917 6111695 complement(3033437..3035992) 1 NC_010501.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: psb:Psyr_4080 rhs element Vgr protein; ImpA family type VI secretion-associated protein 3035992 6111695 PputW619_2744 Pseudomonas putida W619 ImpA family type VI secretion-associated protein YP_001749605.1 3033437 R 390235 CDS YP_001749606.1 170721918 6111696 complement(3036446..3037720) 1 NC_010501.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: psp:PSPPH_B0004 RulB protein; DNA-directed DNA polymerase 3037720 6111696 PputW619_2745 Pseudomonas putida W619 DNA-directed DNA polymerase YP_001749606.1 3036446 R 390235 CDS YP_001749607.1 170721919 6111697 complement(3037710..3038168) 1 NC_010501.1 PFAM: peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2762 peptidase S24, S26A and S26B; peptidase S24/S26 domain-containing protein 3038168 6111697 PputW619_2746 Pseudomonas putida W619 peptidase S24/S26 domain-containing protein YP_001749607.1 3037710 R 390235 CDS YP_001749608.1 170721920 6111698 3038241..3038960 1 NC_010501.1 PFAM: protein of unknown function DUF159; KEGG: psb:Psyr_2763 protein of unknown function DUF159; hypothetical protein 3038960 6111698 PputW619_2747 Pseudomonas putida W619 hypothetical protein YP_001749608.1 3038241 D 390235 CDS YP_001749609.1 170721921 6111699 3038962..3039309 1 NC_010501.1 hypothetical protein 3039309 6111699 PputW619_2748 Pseudomonas putida W619 hypothetical protein YP_001749609.1 3038962 D 390235 CDS YP_001749610.1 170721922 6111700 3039470..3039691 1 NC_010501.1 KEGG: dac:Daci_1611 integrase family protein; hypothetical protein 3039691 6111700 PputW619_2749 Pseudomonas putida W619 hypothetical protein YP_001749610.1 3039470 D 390235 CDS YP_001749611.1 170721923 6111701 3039712..3041298 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3176 ABC transporte, ATP binding protein; ABC transporter-like protein 3041298 6111701 PputW619_2750 Pseudomonas putida W619 ABC transporter-like protein YP_001749611.1 3039712 D 390235 CDS YP_001749612.1 170721924 6111702 3041485..3042678 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2927 transporter; major facilitator superfamily transporter 3042678 6111702 PputW619_2751 Pseudomonas putida W619 major facilitator superfamily transporter YP_001749612.1 3041485 D 390235 CDS YP_001749613.1 170721925 6111703 complement(3042738..3043349) 1 NC_010501.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 3043349 6111703 PputW619_2752 Pseudomonas putida W619 azoreductase YP_001749613.1 3042738 R 390235 CDS YP_001749614.1 170721926 6111704 3043484..3044386 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2930 transcriptional regulator, LysR family; LysR family transcriptional regulator 3044386 6111704 PputW619_2753 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749614.1 3043484 D 390235 CDS YP_001749615.1 170721927 6111705 3044379..3044738 1 NC_010501.1 PFAM: protein of unknown function DUF419; KEGG: pen:PSEEN2931 hypothetical protein; hypothetical protein 3044738 6111705 PputW619_2754 Pseudomonas putida W619 hypothetical protein YP_001749615.1 3044379 D 390235 CDS YP_001749616.1 170721928 6111706 complement(3044767..3045204) 1 NC_010501.1 PFAM: protein of unknown function DUF1294; KEGG: pen:PSEEN2932 hypothetical protein; hypothetical protein 3045204 6111706 PputW619_2755 Pseudomonas putida W619 hypothetical protein YP_001749616.1 3044767 R 390235 CDS YP_001749617.1 170721929 6111707 complement(3045197..3046027) 1 NC_010501.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3046027 6111707 PputW619_2756 Pseudomonas putida W619 undecaprenyl pyrophosphate phosphatase YP_001749617.1 3045197 R 390235 CDS YP_001749618.1 170721930 6111708 3046328..3047962 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: pen:PSEEN2935 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3047962 6111708 PputW619_2757 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749618.1 3046328 D 390235 CDS YP_001749619.1 170721931 6111709 3048089..3049765 1 NC_010501.1 KEGG: pfl:PFL_2485 hypothetical protein; hypothetical protein 3049765 6111709 PputW619_2758 Pseudomonas putida W619 hypothetical protein YP_001749619.1 3048089 D 390235 CDS YP_001749620.1 170721932 6111710 complement(3049811..3051106) 1 NC_010501.1 KEGG: pen:PSEEN2936 hypothetical protein; hypothetical protein 3051106 6111710 PputW619_2759 Pseudomonas putida W619 hypothetical protein YP_001749620.1 3049811 R 390235 CDS YP_001749621.1 170721933 6111711 3051292..3051870 1 NC_010501.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pen:PSEEN2937 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3051870 6111711 PputW619_2760 Pseudomonas putida W619 nicotinamide mononucleotide transporter PnuC YP_001749621.1 3051292 D 390235 CDS YP_001749622.1 170721934 6111712 3051867..3052418 1 NC_010501.1 KEGG: pen:PSEEN2938 hypothetical protein; hypothetical protein 3052418 6111712 PputW619_2761 Pseudomonas putida W619 hypothetical protein YP_001749622.1 3051867 D 390235 CDS YP_001749623.1 170721935 6111713 3052779..3053153 1 NC_010501.1 KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 3053153 6111713 PputW619_2762 Pseudomonas putida W619 hypothetical protein YP_001749623.1 3052779 D 390235 CDS YP_001749624.1 170721936 6111714 3053155..3053733 1 NC_010501.1 KEGG: pen:PSEEN2940 hypothetical protein; hypothetical protein 3053733 6111714 PputW619_2763 Pseudomonas putida W619 hypothetical protein YP_001749624.1 3053155 D 390235 CDS YP_001749625.1 170721937 6111715 3053782..3055269 1 NC_010501.1 KEGG: pen:PSEEN2941 hypothetical protein; hypothetical protein 3055269 6111715 PputW619_2764 Pseudomonas putida W619 hypothetical protein YP_001749625.1 3053782 D 390235 CDS YP_001749626.1 170721938 6111716 3055337..3056017 1 NC_010501.1 PFAM: peptidase C39 bacteriocin processing; KEGG: pen:PSEEN2942 hypothetical protein; peptidase C39 bacteriocin processing 3056017 6111716 PputW619_2765 Pseudomonas putida W619 peptidase C39 bacteriocin processing YP_001749626.1 3055337 D 390235 CDS YP_001749627.1 170721939 6111717 3056050..3056793 1 NC_010501.1 KEGG: pen:PSEEN2943 hypothetical protein; hypothetical protein 3056793 6111717 PputW619_2766 Pseudomonas putida W619 hypothetical protein YP_001749627.1 3056050 D 390235 CDS YP_001749628.1 170721940 6111718 3056840..3058120 1 NC_010501.1 KEGG: pen:PSEEN2944 hypothetical protein; hypothetical protein 3058120 6111718 PputW619_2767 Pseudomonas putida W619 hypothetical protein YP_001749628.1 3056840 D 390235 CDS YP_001749629.1 170721941 6111719 3058256..3060451 1 NC_010501.1 PFAM: sulfatase; KEGG: pen:PSEEN2945 sulfatase; sulfatase 3060451 6111719 PputW619_2768 Pseudomonas putida W619 sulfatase YP_001749629.1 3058256 D 390235 CDS YP_001749630.1 170721942 6111720 complement(3060502..3061827) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2438 sigma-54 dependent transcriptional regulator; sigma-54 dependent trancsriptional regulator 3061827 6111720 PputW619_2769 Pseudomonas putida W619 sigma-54 dependent trancsriptional regulator YP_001749630.1 3060502 R 390235 CDS YP_001749631.1 170721943 6111721 3062170..3062436 1 NC_010501.1 KEGG: pen:PSEEN2436 hypothetical protein; hypothetical protein 3062436 6111721 PputW619_2770 Pseudomonas putida W619 hypothetical protein YP_001749631.1 3062170 D 390235 CDS YP_001749632.1 170721944 6111722 complement(3062550..3063194) 1 NC_010501.1 KEGG: pen:PSEEN2435 hypothetical protein; hypothetical protein 3063194 6111722 PputW619_2771 Pseudomonas putida W619 hypothetical protein YP_001749632.1 3062550 R 390235 CDS YP_001749633.1 170721945 6111723 complement(3063218..3064219) 1 NC_010501.1 KEGG: pen:PSEEN2434 magnesium chelatase, subunit ChII; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase 3064219 6111723 PputW619_2772 Pseudomonas putida W619 magnesium chelatase YP_001749633.1 3063218 R 390235 CDS YP_001749634.1 170721946 6111724 complement(3064221..3067982) 1 NC_010501.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 3067982 cobN 6111724 cobN Pseudomonas putida W619 cobaltochelatase subunit CobN YP_001749634.1 3064221 R 390235 CDS YP_001749635.1 170721947 6111725 complement(3067986..3069053) 1 NC_010501.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN2432 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW 3069053 6111725 PputW619_2774 Pseudomonas putida W619 cobalamin biosynthesis protein CobW YP_001749635.1 3067986 R 390235 CDS YP_001749636.1 170721948 6111726 complement(3069418..3069612) 1 NC_010501.1 KEGG: ddi:DDBDRAFT_0201987 hypothetical protein; hypothetical protein 3069612 6111726 PputW619_2775 Pseudomonas putida W619 hypothetical protein YP_001749636.1 3069418 R 390235 CDS YP_001749637.1 170721949 6111727 3070593..3070778 1 NC_010501.1 TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: pen:PSEEN2431 hypothetical protein; cobalt transporter subunit CbtB 3070778 6111727 PputW619_2776 Pseudomonas putida W619 cobalt transporter subunit CbtB YP_001749637.1 3070593 D 390235 CDS YP_001749638.1 170721950 6111728 3070788..3071498 1 NC_010501.1 TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: pen:PSEEN2429 cobalt transporter subunit CbtA; cobalt transporter subunit CbtA 3071498 6111728 PputW619_2777 Pseudomonas putida W619 cobalt transporter subunit CbtA YP_001749638.1 3070788 D 390235 CDS YP_001749639.1 170721951 6111729 3071495..3071908 1 NC_010501.1 KEGG: pen:PSEEN2428 cobalamin biosynthesis protein CobE; cobalamin biosynthesis protein CobE 3071908 6111729 PputW619_2778 Pseudomonas putida W619 cobalamin biosynthesis protein CobE YP_001749639.1 3071495 D 390235 CDS YP_001749640.1 170721952 6111730 3071941..3072693 1 NC_010501.1 KEGG: pen:PSEEN2427 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 3072693 6111730 PputW619_2779 Pseudomonas putida W619 precorrin-4 C(11)-methyltransferase YP_001749640.1 3071941 D 390235 CDS YP_001749641.1 170721953 6111731 3072760..3073002 1 NC_010501.1 PFAM: protein of unknown function DUF1272; KEGG: pen:PSEEN2426 hypothetical protein; hypothetical protein 3073002 6111731 PputW619_2780 Pseudomonas putida W619 hypothetical protein YP_001749641.1 3072760 D 390235 CDS YP_001749642.1 170721954 6111732 3073227..3073841 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN2425 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 3073841 6111732 PputW619_2781 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001749642.1 3073227 D 390235 CDS YP_001749643.1 170721955 6111733 3073855..3077130 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2424 sensor histidine kinase/response regulator; Hpt sensor hybrid histidine kinase 3077130 6111733 PputW619_2782 Pseudomonas putida W619 Hpt sensor hybrid histidine kinase YP_001749643.1 3073855 D 390235 CDS YP_001749644.1 170721956 6111734 complement(3077105..3078424) 1 NC_010501.1 KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 3078424 6111734 PputW619_2783 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001749644.1 3077105 R 390235 CDS YP_001749645.1 170721957 6111735 complement(3078551..3079570) 1 NC_010501.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN2422 transcriptional regulator, LacI family; LacI family transcriptional regulator 3079570 6111735 PputW619_2784 Pseudomonas putida W619 LacI family transcriptional regulator YP_001749645.1 3078551 R 390235 CDS YP_001749646.1 170721958 6111736 3079779..3080318 1 NC_010501.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase 3080318 6111736 PputW619_2785 Pseudomonas putida W619 carbohydrate kinase YP_001749646.1 3079779 D 390235 CDS YP_001749647.1 170721959 6111737 3080432..3081784 1 NC_010501.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pen:PSEEN2420 gluconate permease (GntP family); gluconate transporter 3081784 6111737 PputW619_2786 Pseudomonas putida W619 gluconate transporter YP_001749647.1 3080432 D 390235 CDS YP_001749648.1 170721960 6111738 3081869..3082171 1 NC_010501.1 KEGG: pen:PSEEN2419 hypothetical protein; hypothetical protein 3082171 6111738 PputW619_2787 Pseudomonas putida W619 hypothetical protein YP_001749648.1 3081869 D 390235 CDS YP_001749649.1 170721961 6111739 complement(3082248..3083672) 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2418 sigma-54 dependent transcriptional regulator, fis family/response regulator; Fis family two component sigma-54 specific transcriptional regulator 3083672 6111739 PputW619_2788 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001749649.1 3082248 R 390235 CDS YP_001749650.1 170721962 6111740 complement(3083641..3085137) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2417 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3085137 6111740 PputW619_2789 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001749650.1 3083641 R 390235 CDS YP_001749651.1 170721963 6111741 complement(3085421..3086881) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2416 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3086881 6111741 PputW619_2790 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001749651.1 3085421 R 390235 CDS YP_001749652.1 170721964 6111742 complement(3086991..3087584) 1 NC_010501.1 PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN2461 lytic transglycosylase; lytic transglycosylase 3087584 6111742 PputW619_2791 Pseudomonas putida W619 lytic transglycosylase YP_001749652.1 3086991 R 390235 CDS YP_001749653.1 170721965 6111743 3087776..3088201 1 NC_010501.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN2460 probable type II secretion system protein G; general secretion pathway protein G 3088201 6111743 PputW619_2792 Pseudomonas putida W619 general secretion pathway protein G YP_001749653.1 3087776 D 390235 CDS YP_001749654.1 170721966 6111744 3088213..3089403 1 NC_010501.1 PFAM: type II secretion system protein; KEGG: pen:PSEEN2459 type II secretion pathway protein F; type II secretion system protein 3089403 6111744 PputW619_2793 Pseudomonas putida W619 type II secretion system protein YP_001749654.1 3088213 D 390235 CDS YP_001749655.1 170721967 6111745 complement(3089500..3090414) 1 NC_010501.1 PFAM: integrase family protein; KEGG: pen:PSEEN2998 site-specific recombinase, phage integrase family; integrase family protein 3090414 6111745 PputW619_2794 Pseudomonas putida W619 integrase family protein YP_001749655.1 3089500 R 390235 CDS YP_001749656.1 170721968 6111746 3090576..3091223 1 NC_010501.1 PFAM: protein of unknown function DUF1345; KEGG: pen:PSEEN3002 hypothetical protein; hypothetical protein 3091223 6111746 PputW619_2795 Pseudomonas putida W619 hypothetical protein YP_001749656.1 3090576 D 390235 CDS YP_001749657.1 170721969 6111747 complement(3091149..3092378) 1 NC_010501.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN3003 aspartate aminotransferase; class I/II aminotransferase 3092378 6111747 PputW619_2796 Pseudomonas putida W619 class I/II aminotransferase YP_001749657.1 3091149 R 390235 CDS YP_001749658.1 170721970 6111748 3092675..3092935 1 NC_010501.1 PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN3004 hypothetical protein; hypothetical protein 3092935 6111748 PputW619_2797 Pseudomonas putida W619 hypothetical protein YP_001749658.1 3092675 D 390235 CDS YP_001749659.1 170721971 6111749 complement(3092932..3095019) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN2858 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 3095019 6111749 PputW619_2798 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001749659.1 3092932 R 390235 CDS YP_001749660.1 170721972 6111750 complement(3095323..3096810) 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2676 outer membrane protein precursor; RND efflux system outer membrane lipoprotein 3096810 6111750 PputW619_2799 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001749660.1 3095323 R 390235 CDS YP_001749661.1 170721973 6111751 complement(3096807..3099914) 1 NC_010501.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2675 multidrug resistance efflux pump; acriflavin resistance protein 3099914 6111751 PputW619_2800 Pseudomonas putida W619 acriflavin resistance protein YP_001749661.1 3096807 R 390235 CDS YP_001749662.1 170721974 6111752 complement(3099911..3103009) 1 NC_010501.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2674 multidrug resistance efflux transporter; acriflavin resistance protein 3103009 6111752 PputW619_2801 Pseudomonas putida W619 acriflavin resistance protein YP_001749662.1 3099911 R 390235 CDS YP_001749663.1 170721975 6111753 complement(3103006..3104298) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2673 multidrug resistance efflux pump; membrane fusion protein; RND family efflux transporter MFP subunit 3104298 6111753 PputW619_2802 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001749663.1 3103006 R 390235 CDS YP_001749664.1 170721976 6111754 complement(3104616..3105116) 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2672 thiol peroxidase; redoxin domain-containing protein 3105116 6111754 PputW619_2803 Pseudomonas putida W619 redoxin domain-containing protein YP_001749664.1 3104616 R 390235 CDS YP_001749665.1 170721977 6111755 complement(3105285..3106562) 1 NC_010501.1 PFAM: Amino acid transporter transmembrane; KEGG: pen:PSEEN2671 serine transport protein; amino acid transporter transmembrane 3106562 6111755 PputW619_2804 Pseudomonas putida W619 amino acid transporter transmembrane YP_001749665.1 3105285 R 390235 CDS YP_001749666.1 170721978 6111756 complement(3106825..3108021) 1 NC_010501.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 3108021 6111756 PputW619_2805 Pseudomonas putida W619 aromatic amino acid aminotransferase YP_001749666.1 3106825 R 390235 CDS YP_001749667.1 170721979 6111757 complement(3108152..3109177) 1 NC_010501.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: pen:PSEEN2669 malate dehydrogenase; malate/L-lactate dehydrogenase 3109177 6111757 PputW619_2806 Pseudomonas putida W619 malate/L-lactate dehydrogenase YP_001749667.1 3108152 R 390235 CDS YP_001749668.1 170721980 6111758 3109320..3110183 1 NC_010501.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN2668 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 3110183 6111758 PputW619_2807 Pseudomonas putida W619 RpiR family transcriptional regulator YP_001749668.1 3109320 D 390235 CDS YP_001749669.1 170721981 6111759 3110205..3110957 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2667 amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3110957 6111759 PputW619_2808 Pseudomonas putida W619 extracellular solute-binding protein YP_001749669.1 3110205 D 390235 CDS YP_001749670.1 170721982 6111760 3111137..3111856 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2666 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3111856 6111760 PputW619_2809 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001749670.1 3111137 D 390235 CDS YP_001749671.1 170721983 6111761 3111853..3112563 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2665 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3112563 6111761 PputW619_2810 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001749671.1 3111853 D 390235 CDS YP_001749672.1 170721984 6111762 3112579..3113823 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2664 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase 3113823 6111762 PputW619_2811 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001749672.1 3112579 D 390235 CDS YP_001749673.1 170721985 6111763 3113846..3114628 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2663 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3114628 6111763 PputW619_2812 Pseudomonas putida W619 ABC transporter-like protein YP_001749673.1 3113846 D 390235 CDS YP_001749674.1 170721986 6111764 3114980..3115789 1 NC_010501.1 PFAM: peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26 3115789 6111764 PputW619_2813 Pseudomonas putida W619 peptidase C26 YP_001749674.1 3114980 D 390235 CDS YP_001749675.1 170721987 6111765 3116169..3117080 1 NC_010501.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 3117080 6111765 PputW619_2814 Pseudomonas putida W619 5-dehydro-4-deoxyglucarate dehydratase YP_001749675.1 3116169 D 390235 CDS YP_001749676.1 170721988 6111766 3117183..3118544 1 NC_010501.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2657 D-galactonate permease; d-galactonate transporter 3118544 6111766 PputW619_2815 Pseudomonas putida W619 d-galactonate transporter YP_001749676.1 3117183 D 390235 CDS YP_001749677.1 170721989 6111767 3118622..3120175 1 NC_010501.1 KEGG: pen:PSEEN2656 D-galactarate dehydrogenase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 3120175 6111767 PputW619_2816 Pseudomonas putida W619 galactarate dehydratase YP_001749677.1 3118622 D 390235 CDS YP_001749678.1 170721990 6111768 3120293..3121873 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2655 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase 3121873 6111768 PputW619_2817 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749678.1 3120293 D 390235 CDS YP_001749679.1 170721991 6111769 complement(3122045..3122794) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2654 transcriptional regulator, GntR family; GntR family transcriptional regulator 3122794 6111769 PputW619_2818 Pseudomonas putida W619 GntR family transcriptional regulator YP_001749679.1 3122045 R 390235 CDS YP_001749680.1 170721992 6111770 3123018..3123668 1 NC_010501.1 KEGG: pen:PSEEN2653 hypothetical protein; hypothetical protein 3123668 6111770 PputW619_2819 Pseudomonas putida W619 hypothetical protein YP_001749680.1 3123018 D 390235 CDS YP_001749681.1 170721993 6111771 3123744..3124073 1 NC_010501.1 KEGG: pen:PSEEN2652 hypothetical protein; hypothetical protein 3124073 6111771 PputW619_2820 Pseudomonas putida W619 hypothetical protein YP_001749681.1 3123744 D 390235 CDS YP_001749682.1 170721994 6111772 complement(3124135..3125055) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2681 probable transcriptional regulator; LysR family transcriptional regulator 3125055 6111772 PputW619_2821 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749682.1 3124135 R 390235 CDS YP_001749683.1 170721995 6111773 complement(3125080..3126054) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_5626 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase 3126054 6111773 PputW619_2822 Pseudomonas putida W619 alcohol dehydrogenase YP_001749683.1 3125080 R 390235 CDS YP_001749684.1 170721996 6111774 complement(3126164..3127378) 1 NC_010501.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pfl:PFL_6147 YeeE/YedE family protein; hypothetical protein 3127378 6111774 PputW619_2823 Pseudomonas putida W619 hypothetical protein YP_001749684.1 3126164 R 390235 CDS YP_001749685.1 170721997 6111775 3127544..3128452 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_4324 transcriptional regulator, LysR family; LysR family transcriptional regulator 3128452 6111775 PputW619_2824 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749685.1 3127544 D 390235 CDS YP_001749686.1 170721998 6111776 complement(3128453..3128971) 1 NC_010501.1 PFAM: protein of unknown function DUF606; KEGG: dac:Daci_4323 protein of unknown function DUF606; hypothetical protein 3128971 6111776 PputW619_2825 Pseudomonas putida W619 hypothetical protein YP_001749686.1 3128453 R 390235 CDS YP_001749687.1 170721999 6111777 complement(3129134..3129712) 1 NC_010501.1 KEGG: pen:PSEEN2168 hypothetical protein; hypothetical protein 3129712 6111777 PputW619_2826 Pseudomonas putida W619 hypothetical protein YP_001749687.1 3129134 R 390235 CDS YP_001749688.1 170722000 6111778 complement(3129788..3131080) 1 NC_010501.1 KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase 3131080 6111778 PputW619_2827 Pseudomonas putida W619 L-sorbosone dehydrogenase YP_001749688.1 3129788 R 390235 CDS YP_001749689.1 170722001 6111779 complement(3131077..3131505) 1 NC_010501.1 KEGG: pst:PSPTO_3688 hypothetical protein; hypothetical protein 3131505 6111779 PputW619_2828 Pseudomonas putida W619 hypothetical protein YP_001749689.1 3131077 R 390235 CDS YP_001749690.1 170722002 6111780 3131685..3131984 1 NC_010501.1 KEGG: pfo:Pfl_2311 hypothetical protein; hypothetical protein 3131984 6111780 PputW619_2829 Pseudomonas putida W619 hypothetical protein YP_001749690.1 3131685 D 390235 CDS YP_001749691.1 170722003 6111781 complement(3131981..3132862) 1 NC_010501.1 KEGG: pst:PSPTO_1341 hypothetical protein; hypothetical protein 3132862 6111781 PputW619_2830 Pseudomonas putida W619 hypothetical protein YP_001749691.1 3131981 R 390235 CDS YP_001749692.1 170722004 6111782 complement(3133002..3133814) 1 NC_010501.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2092 UbiE/COQ5 methyltransferase; type 11 methyltransferase 3133814 6111782 PputW619_2831 Pseudomonas putida W619 type 11 methyltransferase YP_001749692.1 3133002 R 390235 CDS YP_001749693.1 170722005 6111783 complement(3134036..3136222) 1 NC_010501.1 PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: pen:PSEEN3294 hypothetical protein; hypothetical protein 3136222 6111783 PputW619_2832 Pseudomonas putida W619 hypothetical protein YP_001749693.1 3134036 R 390235 CDS YP_001749694.1 170722006 6111784 3136491..3136946 1 NC_010501.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2172 isoquinoline 1-oxidoreductase, alpha subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3136946 6111784 PputW619_2833 Pseudomonas putida W619 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001749694.1 3136491 D 390235 CDS YP_001749695.1 170722007 6111785 3136946..3139195 1 NC_010501.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pen:PSEEN2171 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3139195 6111785 PputW619_2834 Pseudomonas putida W619 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001749695.1 3136946 D 390235 CDS YP_001749696.1 170722008 6111786 3139214..3140560 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2170 cytochrome c; gluconate 2-dehydrogenase 3140560 6111786 PputW619_2835 Pseudomonas putida W619 gluconate 2-dehydrogenase YP_001749696.1 3139214 D 390235 CDS YP_001749697.1 170722009 6111787 3140574..3141587 1 NC_010501.1 PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN2169 hypothetical protein; hypothetical protein 3141587 6111787 PputW619_2836 Pseudomonas putida W619 hypothetical protein YP_001749697.1 3140574 D 390235 CDS YP_001749698.1 170722010 6111788 complement(3141621..3142436) 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2979 hypothetical protein; extracellular solute-binding protein 3142436 6111788 PputW619_2837 Pseudomonas putida W619 extracellular solute-binding protein YP_001749698.1 3141621 R 390235 CDS YP_001749699.1 170722011 6111789 complement(3142572..3142892) 1 NC_010501.1 hypothetical protein 3142892 6111789 PputW619_2838 Pseudomonas putida W619 hypothetical protein YP_001749699.1 3142572 R 390235 CDS YP_001749700.1 170722012 6111790 complement(3143184..3143792) 1 NC_010501.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3143792 6111790 PputW619_2839 Pseudomonas putida W619 L(+)-tartrate dehydratase subunit beta YP_001749700.1 3143184 R 390235 CDS YP_001749701.1 170722013 6111791 complement(3143789..3144688) 1 NC_010501.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3144688 6111791 PputW619_2840 Pseudomonas putida W619 tartrate dehydratase subunit alpha YP_001749701.1 3143789 R 390235 CDS YP_001749702.1 170722014 6111792 complement(3144738..3146069) 1 NC_010501.1 PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSp0995 probable C4-dicarboxylate transport transmembrane protein; sodium:dicarboxylate symporter 3146069 6111792 PputW619_2841 Pseudomonas putida W619 sodium:dicarboxylate symporter YP_001749702.1 3144738 R 390235 CDS YP_001749703.1 170722015 6111793 3146331..3146804 1 NC_010501.1 KEGG: pfo:Pfl_2136 hypothetical protein; hypothetical protein 3146804 6111793 PputW619_2842 Pseudomonas putida W619 hypothetical protein YP_001749703.1 3146331 D 390235 CDS YP_001749704.1 170722016 6111794 complement(3146811..3147620) 1 NC_010501.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll6916 hypothetical protein; xylose isomerase domain-containing protein 3147620 6111794 PputW619_2843 Pseudomonas putida W619 xylose isomerase domain-containing protein YP_001749704.1 3146811 R 390235 CDS YP_001749705.1 170722017 6111795 complement(3147617..3148357) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_0784 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3148357 6111795 PputW619_2844 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749705.1 3147617 R 390235 CDS YP_001749706.1 170722018 6111796 complement(3148354..3149703) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: bmu:Bmul_3421 major facilitator superfamily MFS_1; major facilitator transporter 3149703 6111796 PputW619_2845 Pseudomonas putida W619 major facilitator transporter YP_001749706.1 3148354 R 390235 CDS YP_001749707.1 170722019 6111797 complement(3149746..3150573) 1 NC_010501.1 PFAM: amidohydrolase 2; KEGG: spe:Spro_2095 amidohydrolase 2; amidohydrolase 2 3150573 6111797 PputW619_2846 Pseudomonas putida W619 amidohydrolase 2 YP_001749707.1 3149746 R 390235 CDS YP_001749708.1 170722020 6111798 3150721..3151674 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1436 transcriptional regulator, LysR family; LysR family transcriptional regulator 3151674 6111798 PputW619_2847 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749708.1 3150721 D 390235 CDS YP_001749709.1 170722021 6111799 3151802..3152503 1 NC_010501.1 KEGG: psp:PSPPH_2654 lipoprotein, putative; putative lipoprotein 3152503 6111799 PputW619_2848 Pseudomonas putida W619 putative lipoprotein YP_001749709.1 3151802 D 390235 CDS YP_001749710.1 170722022 6111800 complement(3152569..3153048) 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3260 hypothetical protein; isochorismatase hydrolase 3153048 6111800 PputW619_2849 Pseudomonas putida W619 isochorismatase hydrolase YP_001749710.1 3152569 R 390235 CDS YP_001749711.1 170722023 6111801 3153282..3153680 1 NC_010501.1 KEGG: pen:PSEEN3302 hypothetical protein; hypothetical protein 3153680 6111801 PputW619_2850 Pseudomonas putida W619 hypothetical protein YP_001749711.1 3153282 D 390235 CDS YP_001749712.1 170722024 6111802 complement(3153701..3154447) 1 NC_010501.1 KEGG: pen:PSEEN3354 hypothetical protein; hypothetical protein 3154447 6111802 PputW619_2851 Pseudomonas putida W619 hypothetical protein YP_001749712.1 3153701 R 390235 CDS YP_001749713.1 170722025 6111803 complement(3154440..3155285) 1 NC_010501.1 PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3355 hypothetical protein; hypothetical protein 3155285 6111803 PputW619_2852 Pseudomonas putida W619 hypothetical protein YP_001749713.1 3154440 R 390235 CDS YP_001749714.1 170722026 6111804 complement(3155348..3155869) 1 NC_010501.1 KEGG: pen:PSEEN3356 hypothetical protein; hypothetical protein 3155869 6111804 PputW619_2853 Pseudomonas putida W619 hypothetical protein YP_001749714.1 3155348 R 390235 CDS YP_001749715.1 170722027 6111805 3156188..3156715 1 NC_010501.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pst:PSPTO_4652 iron-sulfur cluster-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3156715 6111805 PputW619_2854 Pseudomonas putida W619 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001749715.1 3156188 D 390235 CDS YP_001749716.1 170722028 6111806 3156712..3157713 1 NC_010501.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: psp:PSPPH_4342 oxidoreductase, molybdopterin-binding subunit; molybdopterin dehydrogenase FAD-binding 3157713 6111806 PputW619_2855 Pseudomonas putida W619 molybdopterin dehydrogenase FAD-binding YP_001749716.1 3156712 D 390235 CDS YP_001749717.1 170722029 6111807 3157710..3159911 1 NC_010501.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pst:PSPTO_4650 aldehyde oxidase and xanthine dehydrogenase family protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3159911 6111807 PputW619_2856 Pseudomonas putida W619 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001749717.1 3157710 D 390235 CDS YP_001749718.1 170722030 6111808 complement(3160007..3161554) 1 NC_010501.1 KEGG: bja:blr2180 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase 3161554 6111808 PputW619_2857 Pseudomonas putida W619 signal transduction histidine kinase YP_001749718.1 3160007 R 390235 CDS YP_001749719.1 170722031 6111809 complement(3161705..3162229) 1 NC_010501.1 KEGG: pfl:PFL_2959 hypothetical protein; hypothetical protein 3162229 6111809 PputW619_2858 Pseudomonas putida W619 hypothetical protein YP_001749719.1 3161705 R 390235 CDS YP_001749720.1 170722032 6111810 3162426..3163283 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2411 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3163283 6111810 PputW619_2859 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749720.1 3162426 D 390235 CDS YP_001749721.1 170722033 6111811 3163324..3163788 1 NC_010501.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pau:PA14_36520 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3163788 6111811 PputW619_2860 Pseudomonas putida W619 hemerythrin HHE cation binding domain-containing protein YP_001749721.1 3163324 D 390235 CDS YP_001749722.1 170722034 6111812 complement(3163883..3164659) 1 NC_010501.1 KEGG: psb:Psyr_0115 hypothetical protein; hypothetical protein 3164659 6111812 PputW619_2861 Pseudomonas putida W619 hypothetical protein YP_001749722.1 3163883 R 390235 CDS YP_001749723.1 170722035 6111813 complement(3164753..3165136) 1 NC_010501.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 3165136 6111813 PputW619_2862 Pseudomonas putida W619 camphor resistance protein CrcB YP_001749723.1 3164753 R 390235 CDS YP_001749724.1 170722036 6111814 complement(3165130..3165309) 1 NC_010501.1 KEGG: psp:PSPPH_1250 hypothetical protein; hypothetical protein 3165309 6111814 PputW619_2863 Pseudomonas putida W619 hypothetical protein YP_001749724.1 3165130 R 390235 CDS YP_001749725.1 170722037 6111815 complement(3165386..3165586) 1 NC_010501.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN3298 hypothetical protein; hypothetical protein 3165586 6111815 PputW619_2864 Pseudomonas putida W619 hypothetical protein YP_001749725.1 3165386 R 390235 CDS YP_001749726.1 170722038 6111816 complement(3165700..3167868) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: psa:PST_2508 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3167868 6111816 PputW619_2865 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001749726.1 3165700 R 390235 CDS YP_001749727.1 170722039 6111817 complement(3168047..3168979) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2387 transcriptional regulator, LysR family; LysR family transcriptional regulator 3168979 6111817 PputW619_2866 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749727.1 3168047 R 390235 CDS YP_001749728.1 170722040 6111818 3169105..3169380 1 NC_010501.1 KEGG: pen:PSEEN2386 hypothetical protein; hypothetical protein 3169380 6111818 PputW619_2867 Pseudomonas putida W619 hypothetical protein YP_001749728.1 3169105 D 390235 CDS YP_001749729.1 170722041 6111819 complement(3169382..3170077) 1 NC_010501.1 PFAM: protein of unknown function DUF633; KEGG: pen:PSEEN2384 hypothetical protein; hypothetical protein 3170077 6111819 PputW619_2868 Pseudomonas putida W619 hypothetical protein YP_001749729.1 3169382 R 390235 CDS YP_001749730.1 170722042 6111820 3170229..3170588 1 NC_010501.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2383 endoribonuclease, L-PSP family; endoribonuclease L-PSP 3170588 6111820 PputW619_2869 Pseudomonas putida W619 endoribonuclease L-PSP YP_001749730.1 3170229 D 390235 CDS YP_001749731.1 170722043 6111821 3170743..3172743 1 NC_010501.1 PFAM: peptidase U32; KEGG: pen:PSEEN3060 peptidase, U32 family; peptidase U32 3172743 6111821 PputW619_2870 Pseudomonas putida W619 peptidase U32 YP_001749731.1 3170743 D 390235 CDS YP_001749732.1 170722044 6111822 complement(3172811..3174193) 1 NC_010501.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN2885 aminotransferase, class III; putative aminotransferase 3174193 6111822 PputW619_2871 Pseudomonas putida W619 putative aminotransferase YP_001749732.1 3172811 R 390235 CDS YP_001749733.1 170722045 6111823 complement(3174216..3175706) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2886 aldehyde dehydrogenase; aldehyde dehydrogenase 3175706 6111823 PputW619_2872 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749733.1 3174216 R 390235 CDS YP_001749734.1 170722046 6111824 complement(3175776..3176624) 1 NC_010501.1 PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2887 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3176624 6111824 PputW619_2873 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001749734.1 3175776 R 390235 CDS YP_001749735.1 170722047 6111825 3176748..3177659 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5811 malonate utilization transcriptional regulator; LysR family transcriptional regulator 3177659 6111825 PputW619_2874 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749735.1 3176748 D 390235 CDS YP_001749736.1 170722048 6111826 complement(3177708..3178472) 1 NC_010501.1 TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter; signal transduction histidine kinase LytS 3178472 6111826 PputW619_2875 Pseudomonas putida W619 signal transduction histidine kinase LytS YP_001749736.1 3177708 R 390235 CDS YP_001749737.1 170722049 6111827 complement(3178478..3178879) 1 NC_010501.1 TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: pap:PSPA7_0299 malonate transporter, MadL subunit; malonate transporter subunit MadL 3178879 6111827 PputW619_2876 Pseudomonas putida W619 malonate transporter subunit MadL YP_001749737.1 3178478 R 390235 CDS YP_001749738.1 170722050 6111828 complement(3178940..3179860) 1 NC_010501.1 TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: psa:PST_4114 malonyl CoA-acyl carrier protein transacylase; malonate decarboxylase subunit epsilon 3179860 6111828 PputW619_2877 Pseudomonas putida W619 malonate decarboxylase subunit epsilon YP_001749738.1 3178940 R 390235 CDS YP_001749739.1 170722051 6111829 complement(3179857..3180471) 1 NC_010501.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase 3180471 6111829 PputW619_2878 Pseudomonas putida W619 phosphoribosyl-dephospho-CoA transferase YP_001749739.1 3179857 R 390235 CDS YP_001749740.1 170722052 6111830 complement(3180473..3181264) 1 NC_010501.1 TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: psa:PST_4116 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma 3181264 6111830 PputW619_2879 Pseudomonas putida W619 malonate decarboxylase subunit gamma YP_001749740.1 3180473 R 390235 CDS YP_001749741.1 170722053 6111831 complement(3181261..3182109) 1 NC_010501.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta 3182109 6111831 PputW619_2880 Pseudomonas putida W619 malonate decarboxylase subunit beta YP_001749741.1 3181261 R 390235 CDS YP_001749742.1 170722054 6111832 complement(3182102..3182401) 1 NC_010501.1 acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta 3182401 6111832 PputW619_2881 Pseudomonas putida W619 malonate decarboxylase subunit delta YP_001749742.1 3182102 R 390235 CDS YP_001749743.1 170722055 6111833 complement(3182403..3183341) 1 NC_010501.1 catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 3183341 6111833 PputW619_2882 Pseudomonas putida W619 triphosphoribosyl-dephospho-CoA synthase YP_001749743.1 3182403 R 390235 CDS YP_001749744.1 170722056 6111834 complement(3183341..3185002) 1 NC_010501.1 TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: psa:PST_4120 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha 3185002 6111834 PputW619_2883 Pseudomonas putida W619 malonate decarboxylase subunit alpha YP_001749744.1 3183341 R 390235 CDS YP_001749745.1 170722057 6111835 3185286..3186356 1 NC_010501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2888 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3186356 6111835 PputW619_2884 Pseudomonas putida W619 enoyl-CoA hydratase/isomerase YP_001749745.1 3185286 D 390235 CDS YP_001749746.1 170722058 6111836 3186373..3187524 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN2889 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3187524 6111836 PputW619_2885 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001749746.1 3186373 D 390235 CDS YP_001749747.1 170722059 6111837 complement(3187619..3188575) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3012 benABC operon transcriptional activator BenR; AraC family transcriptional regulator 3188575 6111837 PputW619_2886 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749747.1 3187619 R 390235 CDS YP_001749748.1 170722060 6111838 3188890..3189774 1 NC_010501.1 KEGG: pfo:Pfl_1951 hypothetical protein; hypothetical protein 3189774 6111838 PputW619_2887 Pseudomonas putida W619 hypothetical protein YP_001749748.1 3188890 D 390235 CDS YP_001749749.1 170722061 6111839 complement(3189781..3190569) 1 NC_010501.1 KEGG: pfl:PFL_2174 hypothetical protein; hypothetical protein 3190569 6111839 PputW619_2888 Pseudomonas putida W619 hypothetical protein YP_001749749.1 3189781 R 390235 CDS YP_001749750.1 170722062 6111840 complement(3190684..3191475) 1 NC_010501.1 TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase; histidinol-phosphate phosphatase 3191475 6111840 PputW619_2889 Pseudomonas putida W619 histidinol-phosphate phosphatase YP_001749750.1 3190684 R 390235 CDS YP_001749751.1 170722063 6111841 3191634..3192524 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pen:PSEEN2890 universal stress protein; UspA domain-containing protein 3192524 6111841 PputW619_2890 Pseudomonas putida W619 UspA domain-containing protein YP_001749751.1 3191634 D 390235 CDS YP_001749752.1 170722064 6111842 3192726..3194861 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:Pfl_2232 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3194861 6111842 PputW619_2891 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001749752.1 3192726 D 390235 CDS YP_001749753.1 170722065 6111843 complement(3194893..3195414) 1 NC_010501.1 KEGG: pen:PSEEN2891 hypothetical protein; hypothetical protein 3195414 6111843 PputW619_2892 Pseudomonas putida W619 hypothetical protein YP_001749753.1 3194893 R 390235 CDS YP_001749754.1 170722066 6111844 complement(3195586..3196452) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2894 transcriptional regulator, LysR family; LysR family transcriptional regulator 3196452 6111844 PputW619_2893 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749754.1 3195586 R 390235 CDS YP_001749755.1 170722067 6111845 3196558..3197943 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2895 aldehyde dehydrogenase; aldehyde dehydrogenase 3197943 6111845 PputW619_2894 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749755.1 3196558 D 390235 CDS YP_001749756.1 170722068 6111846 complement(3198092..3200005) 1 NC_010501.1 KEGG: pca:Pcar_0793 hypothetical protein; hypothetical protein 3200005 6111846 PputW619_2895 Pseudomonas putida W619 hypothetical protein YP_001749756.1 3198092 R 390235 CDS YP_001749757.1 170722069 6111847 complement(3200065..3200973) 1 NC_010501.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2898 transcriptional regulator, AraC family; AraC family transcriptional regulator 3200973 6111847 PputW619_2896 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749757.1 3200065 R 390235 CDS YP_001749758.1 170722070 6111848 3201124..3202482 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2899 glutamine synthetase; glutamate--putrescine ligase 3202482 6111848 PputW619_2897 Pseudomonas putida W619 glutamate--putrescine ligase YP_001749758.1 3201124 D 390235 CDS YP_001749759.1 170722071 6111849 3202548..3203636 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2900 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 3203636 6111849 PputW619_2898 Pseudomonas putida W619 extracellular solute-binding protein YP_001749759.1 3202548 D 390235 CDS YP_001749760.1 170722072 6111850 3203651..3204946 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2901 oxidoreductase; FAD dependent oxidoreductase 3204946 6111850 PputW619_2899 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001749760.1 3203651 D 390235 CDS YP_001749761.1 170722073 6111851 complement(3204948..3206324) 1 NC_010501.1 KEGG: pen:PSEEN2454 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 3206324 6111851 PputW619_2900 Pseudomonas putida W619 L-serine dehydratase 1 YP_001749761.1 3204948 R 390235 CDS YP_001749762.1 170722074 6111852 3206471..3207436 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2453 transcriptional regulator, LysR family; LysR family transcriptional regulator 3207436 6111852 PputW619_2901 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749762.1 3206471 D 390235 CDS YP_001749763.1 170722075 6111853 complement(3207437..3209098) 1 NC_010501.1 PFAM: sulfatase; KEGG: bfs:BF3209 putative sulfatase; sulfatase 3209098 6111853 PputW619_2902 Pseudomonas putida W619 sulfatase YP_001749763.1 3207437 R 390235 CDS YP_001749764.1 170722076 6111854 complement(3209142..3210560) 1 NC_010501.1 KEGG: pen:PSEEN2452 lipopolysaccharide biosynthesis sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 3210560 6111854 PputW619_2903 Pseudomonas putida W619 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_001749764.1 3209142 R 390235 CDS YP_001749765.1 170722077 6111855 complement(3210730..3211479) 1 NC_010501.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: pen:PSEEN2451 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase 3211479 6111855 PputW619_2904 Pseudomonas putida W619 WecB/TagA/CpsF family glycosyl transferase YP_001749765.1 3210730 R 390235 CDS YP_001749766.1 170722078 6111856 complement(3211480..3212667) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2450 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 3212667 6111856 PputW619_2905 Pseudomonas putida W619 glycosyl transferase family protein YP_001749766.1 3211480 R 390235 CDS YP_001749767.1 170722079 6111857 complement(3212664..3213866) 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN2449 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 protein 3213866 6111857 PputW619_2906 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001749767.1 3212664 R 390235 CDS YP_001749768.1 170722080 6111858 complement(3213946..3214911) 1 NC_010501.1 PFAM: protein of unknown function DUF535; KEGG: pen:PSEEN2448 glycosyl transferase; hypothetical protein 3214911 6111858 PputW619_2907 Pseudomonas putida W619 hypothetical protein YP_001749768.1 3213946 R 390235 CDS YP_001749769.1 170722081 6111859 complement(3214913..3215890) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2447 glycosyl transferase, group 2 family; glycosyl transferase family protein 3215890 6111859 PputW619_2908 Pseudomonas putida W619 glycosyl transferase family protein YP_001749769.1 3214913 R 390235 CDS YP_001749770.1 170722082 6111860 complement(3215949..3216473) 1 NC_010501.1 KEGG: pen:PSEEN2446 serine O-acetyltransferase; serine O-acetyltransferase 3216473 6111860 PputW619_2909 Pseudomonas putida W619 serine O-acetyltransferase YP_001749770.1 3215949 R 390235 CDS YP_001749771.1 170722083 6111861 complement(3216482..3217438) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2445 glycosyl transferase; glycosyl transferase family protein 3217438 6111861 PputW619_2910 Pseudomonas putida W619 glycosyl transferase family protein YP_001749771.1 3216482 R 390235 CDS YP_001749772.1 170722084 6111862 complement(3217431..3218048) 1 NC_010501.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2444 hypothetical protein; hexapaptide repeat-containing transferase 3218048 6111862 PputW619_2911 Pseudomonas putida W619 hexapaptide repeat-containing transferase YP_001749772.1 3217431 R 390235 CDS YP_001749773.1 170722085 6111863 complement(3218163..3219629) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN2443 oxidoreductase; GMC oxidoreductase 3219629 6111863 PputW619_2912 Pseudomonas putida W619 GMC oxidoreductase YP_001749773.1 3218163 R 390235 CDS YP_001749774.1 170722086 6111864 complement(3219889..3221265) 1 NC_010501.1 PFAM: polysaccharide biosynthesis protein; KEGG: pen:PSEEN2442 transporter; polysaccharide biosynthesis protein 3221265 6111864 PputW619_2913 Pseudomonas putida W619 polysaccharide biosynthesis protein YP_001749774.1 3219889 R 390235 CDS YP_001749775.1 170722087 6111865 3221360..3222886 1 NC_010501.1 KEGG: pen:PSEEN2441 hypothetical protein; hypothetical protein 3222886 6111865 PputW619_2914 Pseudomonas putida W619 hypothetical protein YP_001749775.1 3221360 D 390235 CDS YP_001749776.1 170722088 6111866 3222891..3225491 1 NC_010501.1 KEGG: pen:PSEEN2440 hypothetical protein; hypothetical protein 3225491 6111866 PputW619_2915 Pseudomonas putida W619 hypothetical protein YP_001749776.1 3222891 D 390235 CDS YP_001749777.1 170722089 6111867 3225567..3226529 1 NC_010501.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN2439 UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase); UDP-glucose 4-epimerase 3226529 6111867 PputW619_2916 Pseudomonas putida W619 UDP-glucose 4-epimerase YP_001749777.1 3225567 D 390235 CDS YP_001749778.1 170722090 6111868 complement(3226596..3227402) 1 NC_010501.1 KEGG: pen:PSEEN2946 exopolysaccharide biosynthesis related tyrosine-protein kinase; non-specific protein-tyrosine kinase 3227402 6111868 PputW619_2917 Pseudomonas putida W619 non-specific protein-tyrosine kinase YP_001749778.1 3226596 R 390235 CDS YP_001749779.1 170722091 6111869 complement(3227415..3228983) 1 NC_010501.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN2947 exopolysaccharide transport protein; lipopolysaccharide biosynthesis protein 3228983 6111869 PputW619_2918 Pseudomonas putida W619 lipopolysaccharide biosynthesis protein YP_001749779.1 3227415 R 390235 CDS YP_001749780.1 170722092 6111870 complement(3229004..3230080) 1 NC_010501.1 KEGG: pen:PSEEN2948 hypothetical protein; hypothetical protein 3230080 6111870 PputW619_2919 Pseudomonas putida W619 hypothetical protein YP_001749780.1 3229004 R 390235 CDS YP_001749781.1 170722093 6111871 complement(3230145..3230702) 1 NC_010501.1 PFAM: polysaccharide export protein; KEGG: pen:PSEEN2949 polysaccharide export protein; polysaccharide export protein 3230702 6111871 PputW619_2920 Pseudomonas putida W619 polysaccharide export protein YP_001749781.1 3230145 R 390235 CDS YP_001749782.1 170722094 6111872 complement(3231006..3231182) 1 NC_010501.1 KEGG: pen:PSEEN2950 hypothetical protein; hypothetical protein 3231182 6111872 PputW619_2921 Pseudomonas putida W619 hypothetical protein YP_001749782.1 3231006 R 390235 CDS YP_001749783.1 170722095 6111873 complement(3231521..3232639) 1 NC_010501.1 KEGG: pen:PSEEN2951 hypothetical protein; hypothetical protein 3232639 6111873 PputW619_2922 Pseudomonas putida W619 hypothetical protein YP_001749783.1 3231521 R 390235 CDS YP_001749784.1 170722096 6111874 complement(3232715..3233863) 1 NC_010501.1 KEGG: pen:PSEEN2952 hypothetical protein; hypothetical protein 3233863 6111874 PputW619_2923 Pseudomonas putida W619 hypothetical protein YP_001749784.1 3232715 R 390235 CDS YP_001749785.1 170722097 6111875 3234177..3237965 1 NC_010501.1 KEGG: pen:PSEEN2953 hypothetical protein; hypothetical protein 3237965 6111875 PputW619_2924 Pseudomonas putida W619 hypothetical protein YP_001749785.1 3234177 D 390235 CDS YP_001749786.1 170722098 6111876 complement(3237972..3239573) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2954 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 3239573 6111876 PputW619_2925 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001749786.1 3237972 R 390235 CDS YP_001749787.1 170722099 6111877 3239712..3241331 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2956 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 3241331 6111877 PputW619_2926 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749787.1 3239712 D 390235 CDS YP_001749788.1 170722100 6111878 3241453..3241920 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2957 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3241920 6111878 PputW619_2927 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001749788.1 3241453 D 390235 CDS YP_001749789.1 170722101 6111879 3241984..3243171 1 NC_010501.1 KEGG: pen:PSEEN2958 hypothetical protein; hypothetical protein 3243171 6111879 PputW619_2928 Pseudomonas putida W619 hypothetical protein YP_001749789.1 3241984 D 390235 CDS YP_001749790.1 170722102 6111880 complement(3243267..3244829) 1 NC_010501.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 3244829 6111880 PputW619_2929 Pseudomonas putida W619 threonine dehydratase YP_001749790.1 3243267 R 390235 CDS YP_001749791.1 170722103 6111881 complement(3245014..3245445) 1 NC_010501.1 PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN2961 hypothetical protein; transmembrane pair domain-containing protein 3245445 6111881 PputW619_2930 Pseudomonas putida W619 transmembrane pair domain-containing protein YP_001749791.1 3245014 R 390235 CDS YP_001749792.1 170722104 6111882 3245634..3246788 1 NC_010501.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN2963 UDP-N-acetyl glucosamine-2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3246788 6111882 PputW619_2931 Pseudomonas putida W619 UDP-N-acetylglucosamine 2-epimerase YP_001749792.1 3245634 D 390235 CDS YP_001749793.1 170722105 6111883 3246785..3248959 1 NC_010501.1 PFAM: General secretory system II protein E domain protein; KEGG: pen:PSEEN2964 bacteriophage receptor protein NfrB; bacteriophage N4 adsorption protein B 3248959 nfrB 6111883 nfrB Pseudomonas putida W619 bacteriophage N4 adsorption protein B YP_001749793.1 3246785 D 390235 CDS YP_001749794.1 170722106 6111884 3248956..3251958 1 NC_010501.1 KEGG: pen:PSEEN2965 hypothetical protein; bacteriophage N4 receptor, outer membrane subunit 3251958 6111884 PputW619_2933 Pseudomonas putida W619 bacteriophage N4 receptor, outer membrane subunit YP_001749794.1 3248956 D 390235 CDS YP_001749795.1 170722107 6111885 3251958..3252797 1 NC_010501.1 KEGG: pen:PSEEN2966 hypothetical protein; hypothetical protein 3252797 6111885 PputW619_2934 Pseudomonas putida W619 hypothetical protein YP_001749795.1 3251958 D 390235 CDS YP_001749796.1 170722108 6111886 complement(3252923..3254221) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2968 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3254221 6111886 PputW619_2935 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001749796.1 3252923 R 390235 CDS YP_001749797.1 170722109 6111887 complement(3254228..3254929) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2969 response regulator; two component transcriptional regulator 3254929 6111887 PputW619_2936 Pseudomonas putida W619 two component transcriptional regulator YP_001749797.1 3254228 R 390235 CDS YP_001749798.1 170722110 6111888 3255103..3256278 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2970 multidrug efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 3256278 6111888 PputW619_2937 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001749798.1 3255103 D 390235 CDS YP_001749799.1 170722111 6111889 3256290..3259415 1 NC_010501.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2971 multidrug/solvent RND transporter, AcrB-like; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3259415 6111889 PputW619_2938 Pseudomonas putida W619 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001749799.1 3256290 D 390235 CDS YP_001749800.1 170722112 6111890 3259584..3259853 1 NC_010501.1 KEGG: esa:ESA_04306 hypothetical protein; hypothetical protein 3259853 6111890 PputW619_2939 Pseudomonas putida W619 hypothetical protein YP_001749800.1 3259584 D 390235 CDS YP_001749801.1 170722113 6111891 3259850..3261142 1 NC_010501.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; PFAM: filamentation induced by cAMP protein Fic; KEGG: esa:ESA_04305 hypothetical protein; molybdopterin-guanine dinucleotide biosynthesis protein A 3261142 6111891 PputW619_2940 Pseudomonas putida W619 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001749801.1 3259850 D 390235 CDS YP_001749802.1 170722114 6111892 complement(3261267..3262940) 1 NC_010501.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3262940 6111892 PputW619_2941 Pseudomonas putida W619 acyl-CoA synthetase YP_001749802.1 3261267 R 390235 CDS YP_001749803.1 170722115 6111893 complement(3263017..3264138) 1 NC_010501.1 KEGG: pen:PSEEN2974 quinohemoprotein amine dehydrogenase 40 kDa subunit; quinohemoprotein amine dehydrogenase 40 kDa subunit 3264138 6111893 PputW619_2942 Pseudomonas putida W619 quinohemoprotein amine dehydrogenase 40 kDa subunit YP_001749803.1 3263017 R 390235 CDS YP_001749804.1 170722116 6111894 complement(3264171..3264494) 1 NC_010501.1 PFAM: Quinohemoprotein amine dehydrogenase gamma subunit; KEGG: pen:PSEEN2975 quinohemoprotein amine dehydrogenase gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma 3264494 6111894 PputW619_2943 Pseudomonas putida W619 quinohemoprotein amine dehydrogenase subunit gamma YP_001749804.1 3264171 R 390235 CDS YP_001749805.1 170722117 6111895 complement(3264496..3265926) 1 NC_010501.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2976 hypothetical protein; radical SAM domain-containing protein 3265926 6111895 PputW619_2944 Pseudomonas putida W619 radical SAM domain-containing protein YP_001749805.1 3264496 R 390235 CDS YP_001749806.1 170722118 6111896 complement(3265977..3267605) 1 NC_010501.1 PFAM: Quinohemoprotein amine dehydrogenase A alpha subunit haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; KEGG: pen:PSEEN2977 quinohemoprotein amine dehydrogenase 60 kDa subunit; hypothetical protein 3267605 6111896 PputW619_2945 Pseudomonas putida W619 hypothetical protein YP_001749806.1 3265977 R 390235 CDS YP_001749807.1 170722119 6111897 3268024..3269517 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2978 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 3269517 6111897 PputW619_2946 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749807.1 3268024 D 390235 CDS YP_001749808.1 170722120 6111898 3269629..3270942 1 NC_010501.1 KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 3270942 6111898 PputW619_2947 Pseudomonas putida W619 hypothetical protein YP_001749808.1 3269629 D 390235 CDS YP_001749809.1 170722121 6111899 complement(3271044..3272336) 1 NC_010501.1 PFAM: monooxygenase FAD-binding; KEGG: pen:PSEEN2817 hypothetical protein; monooxygenase FAD-binding 3272336 6111899 PputW619_2948 Pseudomonas putida W619 monooxygenase FAD-binding YP_001749809.1 3271044 R 390235 CDS YP_001749810.1 170722122 6111900 complement(3272329..3273006) 1 NC_010501.1 KEGG: pen:PSEEN2818 hypothetical protein; hypothetical protein 3273006 6111900 PputW619_2949 Pseudomonas putida W619 hypothetical protein YP_001749810.1 3272329 R 390235 CDS YP_001749811.1 170722123 6111901 complement(3272996..3274729) 1 NC_010501.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2819 ABC efflux transporter, permease/ATP-binding protein; ABC transporter-like protein 3274729 6111901 PputW619_2950 Pseudomonas putida W619 ABC transporter-like protein YP_001749811.1 3272996 R 390235 CDS YP_001749812.1 170722124 6111902 complement(3274731..3276650) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2820 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 3276650 6111902 PputW619_2951 Pseudomonas putida W619 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001749812.1 3274731 R 390235 CDS YP_001749813.1 170722125 6111903 3276969..3278297 1 NC_010501.1 KEGG: pen:PSEEN2821 hypothetical protein; hypothetical protein 3278297 6111903 PputW619_2952 Pseudomonas putida W619 hypothetical protein YP_001749813.1 3276969 D 390235 CDS YP_001749814.1 170722126 6111904 3278330..3280561 1 NC_010501.1 KEGG: pen:PSEEN2822 hypothetical protein; hypothetical protein 3280561 6111904 PputW619_2953 Pseudomonas putida W619 hypothetical protein YP_001749814.1 3278330 D 390235 CDS YP_001749815.1 170722127 6111905 3280577..3281047 1 NC_010501.1 PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2823 curli fiber surface-exposed nucleator CsgB; curlin-associated protein 3281047 6111905 PputW619_2954 Pseudomonas putida W619 curlin-associated protein YP_001749815.1 3280577 D 390235 CDS YP_001749816.1 170722128 6111906 3281064..3282509 1 NC_010501.1 PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2824 curlin; signal peptide; curlin-associated protein 3282509 6111906 PputW619_2955 Pseudomonas putida W619 curlin-associated protein YP_001749816.1 3281064 D 390235 CDS YP_001749817.1 170722129 6111907 3282791..3285208 1 NC_010501.1 TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN2918 quinate dehydrogenase (pyrroloquinoline-quinone); PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 3285208 6111907 PputW619_2956 Pseudomonas putida W619 PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein YP_001749817.1 3282791 D 390235 CDS YP_001749818.1 170722130 6111908 3285320..3286588 1 NC_010501.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pfo:Pfl_2711 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 3286588 6111908 PputW619_2957 Pseudomonas putida W619 carbohydrate-selective porin OprB YP_001749818.1 3285320 D 390235 CDS YP_001749819.1 170722131 6111909 complement(3286617..3287777) 1 NC_010501.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 3287777 6111909 PputW619_2958 Pseudomonas putida W619 acetylornithine deacetylase YP_001749819.1 3286617 R 390235 CDS YP_001749820.1 170722132 6111910 complement(3287770..3288447) 1 NC_010501.1 PFAM: protein of unknown function DUF1028; KEGG: pen:PSEEN2649 hypothetical protein; hypothetical protein 3288447 6111910 PputW619_2959 Pseudomonas putida W619 hypothetical protein YP_001749820.1 3287770 R 390235 CDS YP_001749821.1 170722133 6111911 3288750..3290069 1 NC_010501.1 KEGG: pen:PSEEN2648 oxidoreductase, PNDR family (class II); PNDR family (class II) oxidoreductase 3290069 6111911 PputW619_2960 Pseudomonas putida W619 PNDR family (class II) oxidoreductase YP_001749821.1 3288750 D 390235 CDS YP_001749822.1 170722134 6111912 3290069..3290485 1 NC_010501.1 PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2647 hypothetical protein; endoribonuclease L-PSP 3290485 6111912 PputW619_2961 Pseudomonas putida W619 endoribonuclease L-PSP YP_001749822.1 3290069 D 390235 CDS YP_001749823.1 170722135 6111913 complement(3290524..3291429) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2103 transcriptional regulator, LysR family; LysR family transcriptional regulator 3291429 6111913 PputW619_2962 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749823.1 3290524 R 390235 CDS YP_001749824.1 170722136 6111914 3291617..3292003 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3292003 6111914 PputW619_2963 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001749824.1 3291617 D 390235 CDS YP_001749825.1 170722137 6111915 3292080..3292649 1 NC_010501.1 KEGG: pen:PSEEN3006 hypothetical protein; hypothetical protein 3292649 6111915 PputW619_2964 Pseudomonas putida W619 hypothetical protein YP_001749825.1 3292080 D 390235 CDS YP_001749826.1 170722138 6111916 complement(3292715..3294388) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3007 metabolite MFS transporter, MHS family; general substrate transporter 3294388 6111916 PputW619_2965 Pseudomonas putida W619 general substrate transporter YP_001749826.1 3292715 R 390235 CDS YP_001749827.1 170722139 6111917 complement(3294594..3295019) 1 NC_010501.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2571 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3295019 6111917 PputW619_2966 Pseudomonas putida W619 glyoxalase/bleomycin resistance protein/dioxygenase YP_001749827.1 3294594 R 390235 CDS YP_001749828.1 170722140 6111918 complement(3295085..3296011) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2459 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 3296011 6111918 PputW619_2967 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001749828.1 3295085 R 390235 CDS YP_001749829.1 170722141 6111919 3296196..3301073 1 NC_010501.1 PFAM: leucine-rich repeat protein; KEGG: pen:PSEEN3009 hypothetical protein; hypothetical protein 3301073 6111919 PputW619_2968 Pseudomonas putida W619 hypothetical protein YP_001749829.1 3296196 D 390235 CDS YP_001749830.1 170722142 6111920 complement(3301081..3303585) 1 NC_010501.1 PFAM: UvrD/REP helicase; KEGG: pen:PSEEN3010 helicase; UvrD/REP family; UvrD/REP helicase 3303585 6111920 PputW619_2969 Pseudomonas putida W619 UvrD/REP helicase YP_001749830.1 3301081 R 390235 CDS YP_001749831.1 170722143 6111921 3303772..3304470 1 NC_010501.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN3011 hypothetical protein; pirin domain-containing protein 3304470 6111921 PputW619_2970 Pseudomonas putida W619 pirin domain-containing protein YP_001749831.1 3303772 D 390235 CDS YP_001749832.1 170722144 6111922 complement(3304510..3306147) 1 NC_010501.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 3306147 6111922 PputW619_2971 Pseudomonas putida W619 phosphoglucomutase YP_001749832.1 3304510 R 390235 CDS YP_001749833.1 170722145 6111923 complement(3306234..3308495) 1 NC_010501.1 PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: pen:PSEEN2644 hypothetical protein; DEAD/DEAH box helicase 3308495 6111923 PputW619_2972 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001749833.1 3306234 R 390235 CDS YP_001749834.1 170722146 6111924 complement(3308492..3310141) 1 NC_010501.1 PFAM: VRR-NUC domain protein; KEGG: pen:PSEEN2643 hypothetical protein; VRR-NUC domain-containing protein 3310141 6111924 PputW619_2973 Pseudomonas putida W619 VRR-NUC domain-containing protein YP_001749834.1 3308492 R 390235 CDS YP_001749835.1 170722147 6111925 complement(3310256..3310747) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet0382 probable acetyltransferase; N-acetyltransferase GCN5 3310747 6111925 PputW619_2974 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749835.1 3310256 R 390235 CDS YP_001749836.1 170722148 6111926 complement(3310810..3312156) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; GntR family transcriptional regulator 3312156 6111926 PputW619_2975 Pseudomonas putida W619 GntR family transcriptional regulator YP_001749836.1 3310810 R 390235 CDS YP_001749837.1 170722149 6111927 complement(3312146..3313537) 1 NC_010501.1 KEGG: pen:PSEEN2632 hypothetical protein; hypothetical protein 3313537 6111927 PputW619_2976 Pseudomonas putida W619 hypothetical protein YP_001749837.1 3312146 R 390235 CDS YP_001749838.1 170722150 6111928 complement(3314143..3315165) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN2630 quinone oxidoreductase; alcohol dehydrogenase 3315165 6111928 PputW619_2977 Pseudomonas putida W619 alcohol dehydrogenase YP_001749838.1 3314143 R 390235 CDS YP_001749839.1 170722151 6111929 3315371..3316285 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2629 transcriptional regulator, LysR family; LysR family transcriptional regulator 3316285 6111929 PputW619_2978 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749839.1 3315371 D 390235 CDS YP_001749840.1 170722152 6111930 3316398..3318185 1 NC_010501.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pfo:Pfl_2732 pyruvate decarboxylase; thiamine pyrophosphate protein 3318185 6111930 PputW619_2979 Pseudomonas putida W619 thiamine pyrophosphate protein YP_001749840.1 3316398 D 390235 CDS YP_001749841.1 170722153 6111931 complement(3318522..3319355) 1 NC_010501.1 KEGG: pen:PSEEN2686 hypothetical protein; hypothetical protein 3319355 6111931 PputW619_2980 Pseudomonas putida W619 hypothetical protein YP_001749841.1 3318522 R 390235 CDS YP_001749842.1 170722154 6111932 complement(3319358..3319876) 1 NC_010501.1 PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2687 hypothetical protein; putative phosphohistidine phosphatase SixA 3319876 6111932 PputW619_2981 Pseudomonas putida W619 putative phosphohistidine phosphatase SixA YP_001749842.1 3319358 R 390235 CDS YP_001749843.1 170722155 6111933 complement(3320184..3320507) 1 NC_010501.1 KEGG: pfo:Pfl_4872 lipoprotein, putative; putative lipoprotein 3320507 6111933 PputW619_2982 Pseudomonas putida W619 putative lipoprotein YP_001749843.1 3320184 R 390235 CDS YP_001749844.1 170722156 6111934 complement(3320722..3321483) 1 NC_010501.1 KEGG: pmy:Pmen_2474 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3321483 6111934 PputW619_2983 Pseudomonas putida W619 PA-phosphatase-like phosphoesterase YP_001749844.1 3320722 R 390235 CDS YP_001749845.1 170722157 6111935 3321652..3322335 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3091 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 3322335 6111935 PputW619_2984 Pseudomonas putida W619 two component transcriptional regulator YP_001749845.1 3321652 D 390235 CDS YP_001749846.1 170722158 6111936 3322597..3324231 1 NC_010501.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pst:PSPTO_5584 hypothetical protein; sulfatase 3324231 6111936 PputW619_2985 Pseudomonas putida W619 sulfatase YP_001749846.1 3322597 D 390235 CDS YP_001749847.1 170722159 6111937 complement(3324437..3324979) 1 NC_010501.1 KEGG: acb:A1S_1106 hypothetical protein; hypothetical protein 3324979 6111937 PputW619_2986 Pseudomonas putida W619 hypothetical protein YP_001749847.1 3324437 R 390235 CDS YP_001749848.1 170722160 6111938 3325329..3326744 1 NC_010501.1 KEGG: syf:Synpcc7942_1504 hypothetical protein; hypothetical protein 3326744 6111938 PputW619_2987 Pseudomonas putida W619 hypothetical protein YP_001749848.1 3325329 D 390235 CDS YP_001749849.1 170722161 6111939 complement(3326741..3327682) 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pmy:Pmen_3255 extracellular solute-binding protein, family 3; extracellular solute-binding protein 3327682 6111939 PputW619_2988 Pseudomonas putida W619 extracellular solute-binding protein YP_001749849.1 3326741 R 390235 CDS YP_001749850.1 170722162 6111940 complement(3327679..3329010) 1 NC_010501.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 3329010 potE 6111940 potE Pseudomonas putida W619 putrescine transporter YP_001749850.1 3327679 R 390235 CDS YP_001749851.1 170722163 6111941 3329694..3331235 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_01670 putative ATP-binding component of ABC transporter; ABC transporter-like protein 3331235 6111941 PputW619_2990 Pseudomonas putida W619 ABC transporter-like protein YP_001749851.1 3329694 D 390235 CDS YP_001749852.1 170722164 6111942 3331248..3332348 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pau:PA14_01680 putative permease of ABC transporter; inner-membrane translocator 3332348 6111942 PputW619_2991 Pseudomonas putida W619 inner-membrane translocator YP_001749852.1 3331248 D 390235 CDS YP_001749853.1 170722165 6111943 3332407..3333333 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: psb:Psyr_0671 inner-membrane translocator; inner-membrane translocator 3333333 6111943 PputW619_2992 Pseudomonas putida W619 inner-membrane translocator YP_001749853.1 3332407 D 390235 CDS YP_001749854.1 170722166 6111944 3333446..3334531 1 NC_010501.1 PFAM: basic membrane lipoprotein; KEGG: psb:Psyr_0663 basic membrane lipoprotein; basic membrane lipoprotein 3334531 6111944 PputW619_2993 Pseudomonas putida W619 basic membrane lipoprotein YP_001749854.1 3333446 D 390235 CDS YP_001749855.1 170722167 6111945 3334589..3335551 1 NC_010501.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_3080 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 3335551 6111945 PputW619_2994 Pseudomonas putida W619 2OG-Fe(II) oxygenase YP_001749855.1 3334589 D 390235 CDS YP_001749856.1 170722168 6111946 complement(3335563..3336747) 1 NC_010501.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pfl:PFL_3535 peptidase, M20/M25/M40 family; amidohydrolase 3336747 6111946 PputW619_2995 Pseudomonas putida W619 amidohydrolase YP_001749856.1 3335563 R 390235 CDS YP_001749857.1 170722169 6111947 complement(3336749..3338050) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3534 proline/betaine transporter; major facilitator transporter 3338050 6111947 PputW619_2996 Pseudomonas putida W619 major facilitator transporter YP_001749857.1 3336749 R 390235 CDS YP_001749858.1 170722170 6111948 3338429..3339568 1 NC_010501.1 KEGG: bch:Bcen2424_4766 porin, gram-negative type; porin 3339568 6111948 PputW619_2997 Pseudomonas putida W619 porin YP_001749858.1 3338429 D 390235 CDS YP_001749859.1 170722171 6111949 complement(3339545..3340483) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5417 transcriptional regulator, LysR family; LysR family transcriptional regulator 3340483 6111949 PputW619_2998 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749859.1 3339545 R 390235 CDS YP_001749860.1 170722172 6111950 complement(3340731..3342272) 1 NC_010501.1 PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pen:PSEEN2739 photolyase; deoxyribodipyrimidine photolyase-like protein 3342272 6111950 PputW619_2999 Pseudomonas putida W619 deoxyribodipyrimidine photolyase-like protein YP_001749860.1 3340731 R 390235 CDS YP_001749861.1 170722173 6111951 complement(3342266..3342571) 1 NC_010501.1 KEGG: pfl:PFL_5334 hypothetical protein; hypothetical protein 3342571 6111951 PputW619_3000 Pseudomonas putida W619 hypothetical protein YP_001749861.1 3342266 R 390235 CDS YP_001749862.1 170722174 6111952 3342831..3343220 1 NC_010501.1 KEGG: pen:PSEEN2751 hypothetical protein; hypothetical protein 3343220 6111952 PputW619_3001 Pseudomonas putida W619 hypothetical protein YP_001749862.1 3342831 D 390235 CDS YP_001749863.1 170722175 6111953 3343283..3345436 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2750 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 3345436 6111953 PputW619_3002 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001749863.1 3343283 D 390235 CDS YP_001749864.1 170722176 6111954 3345556..3346047 1 NC_010501.1 PFAM: protein of unknown function DUF1543; KEGG: pfl:PFL_2512 hypothetical protein; hypothetical protein 3346047 6111954 PputW619_3003 Pseudomonas putida W619 hypothetical protein YP_001749864.1 3345556 D 390235 CDS YP_001749865.1 170722177 6111955 complement(3346093..3346509) 1 NC_010501.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3346509 6111955 PputW619_3004 Pseudomonas putida W619 nickel responsive regulator YP_001749865.1 3346093 R 390235 CDS YP_001749866.1 170722178 6111956 3346705..3348171 1 NC_010501.1 KEGG: bcs:BCAN_B0818 nickel ABC transporter, periplasmic nickel-binding protein; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter substrate-binding protein 3348171 6111956 PputW619_3005 Pseudomonas putida W619 nickel ABC transporter substrate-binding protein YP_001749866.1 3346705 D 390235 CDS YP_001749867.1 170722179 6111957 3348173..3349114 1 NC_010501.1 with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 3349114 6111957 PputW619_3006 Pseudomonas putida W619 nickel transporter permease NikB YP_001749867.1 3348173 D 390235 CDS YP_001749868.1 170722180 6111958 3349111..3349956 1 NC_010501.1 with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 3349956 nikC 6111958 nikC Pseudomonas putida W619 nickel transporter permease NikC YP_001749868.1 3349111 D 390235 CDS YP_001749869.1 170722181 6111959 3349957..3350727 1 NC_010501.1 with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 3350727 nikD 6111959 nikD Pseudomonas putida W619 nickel transporter ATP-binding protein NikD YP_001749869.1 3349957 D 390235 CDS YP_001749870.1 170722182 6111960 3350724..3351545 1 NC_010501.1 with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 3351545 nikE 6111960 nikE Pseudomonas putida W619 nickel transporter ATP-binding protein NikE YP_001749870.1 3350724 D 390235 CDS YP_001749871.1 170722183 6111961 3351647..3352780 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb1328 GGDEF domain; diguanylate cyclase 3352780 6111961 PputW619_3010 Pseudomonas putida W619 diguanylate cyclase YP_001749871.1 3351647 D 390235 CDS YP_001749872.1 170722184 6111962 3353096..3354505 1 NC_010501.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pfl:PFL_2518 domain of unknown function (DUF404) family; hypothetical protein 3354505 6111962 PputW619_3011 Pseudomonas putida W619 hypothetical protein YP_001749872.1 3353096 D 390235 CDS YP_001749873.1 170722185 6111963 3354509..3355459 1 NC_010501.1 PFAM: protein of unknown function DUF403; KEGG: pfl:PFL_2519 hypothetical protein; hypothetical protein 3355459 6111963 PputW619_3012 Pseudomonas putida W619 hypothetical protein YP_001749873.1 3354509 D 390235 CDS YP_001749874.1 170722186 6111964 3355456..3356235 1 NC_010501.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pfl:PFL_2520 transglutaminase-like superfamily domain protein; transglutaminase domain-containing protein 3356235 6111964 PputW619_3013 Pseudomonas putida W619 transglutaminase domain-containing protein YP_001749874.1 3355456 D 390235 CDS YP_001749875.1 170722187 6111965 3356313..3357047 1 NC_010501.1 KEGG: pae:PA1733 putative proteasome-type protease; putative proteasome-type protease 3357047 6111965 PputW619_3014 Pseudomonas putida W619 putative proteasome-type protease YP_001749875.1 3356313 D 390235 CDS YP_001749876.1 170722188 6111966 complement(3357066..3357626) 1 NC_010501.1 KEGG: pnu:Pnuc_0548 hypothetical protein; hypothetical protein 3357626 6111966 PputW619_3015 Pseudomonas putida W619 hypothetical protein YP_001749876.1 3357066 R 390235 CDS YP_001749877.1 170722189 6111967 3357741..3358049 1 NC_010501.1 hypothetical protein 3358049 6111967 PputW619_3016 Pseudomonas putida W619 hypothetical protein YP_001749877.1 3357741 D 390235 CDS YP_001749878.1 170722190 6111968 3358098..3359324 1 NC_010501.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pmy:Pmen_2228 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 3359324 6111968 PputW619_3017 Pseudomonas putida W619 chromate transporter YP_001749878.1 3358098 D 390235 CDS YP_001749879.1 170722191 6111969 complement(3359299..3360663) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2758 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3360663 6111969 PputW619_3018 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001749879.1 3359299 R 390235 CDS YP_001749880.1 170722192 6111970 complement(3360660..3361322) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2757 DNA-binding response regulator; two component transcriptional regulator 3361322 6111970 PputW619_3019 Pseudomonas putida W619 two component transcriptional regulator YP_001749880.1 3360660 R 390235 CDS YP_001749881.1 170722193 6111971 complement(3361325..3361966) 1 NC_010501.1 KEGG: pen:PSEEN2756 hypothetical protein; hypothetical protein 3361966 6111971 PputW619_3020 Pseudomonas putida W619 hypothetical protein YP_001749881.1 3361325 R 390235 CDS YP_001749882.1 170722194 6111972 complement(3361963..3362769) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2755 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3362769 6111972 PputW619_3021 Pseudomonas putida W619 short chain dehydrogenase YP_001749882.1 3361963 R 390235 CDS YP_001749883.1 170722195 6111973 complement(3362756..3363436) 1 NC_010501.1 KEGG: pen:PSEEN2754 hypothetical protein; hypothetical protein 3363436 6111973 PputW619_3022 Pseudomonas putida W619 hypothetical protein YP_001749883.1 3362756 R 390235 CDS YP_001749884.1 170722196 6111974 complement(3363445..3364908) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN2753 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 3364908 6111974 PputW619_3023 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001749884.1 3363445 R 390235 CDS YP_001749885.1 170722197 6111975 complement(3364898..3365575) 1 NC_010501.1 KEGG: pen:PSEEN2752 hypothetical protein; hypothetical protein 3365575 6111975 PputW619_3024 Pseudomonas putida W619 hypothetical protein YP_001749885.1 3364898 R 390235 CDS YP_001749886.1 170722198 6111976 3365810..3366235 1 NC_010501.1 PFAM: Ion transport 2 domain protein; KEGG: pst:PSPTO_1665 hypothetical protein; Ion transport 2 domain-containing protein 3366235 6111976 PputW619_3025 Pseudomonas putida W619 Ion transport 2 domain-containing protein YP_001749886.1 3365810 D 390235 CDS YP_001749887.1 170722199 6111977 3366344..3366913 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_6272 hypothetical protein; N-acetyltransferase GCN5 3366913 6111977 PputW619_3026 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749887.1 3366344 D 390235 CDS YP_001749888.1 170722200 6111978 complement(3366892..3367554) 1 NC_010501.1 hypothetical protein 3367554 6111978 PputW619_3027 Pseudomonas putida W619 hypothetical protein YP_001749888.1 3366892 R 390235 CDS YP_001749889.1 170722201 6111979 complement(3367574..3368941) 1 NC_010501.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ajs:Ajs_2691 beta-lactamase domain protein; beta-lactamase domain-containing protein 3368941 6111979 PputW619_3028 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001749889.1 3367574 R 390235 CDS YP_001749890.1 170722202 6111980 complement(3368932..3369858) 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pfo:Pfl_3340 universal stress protein family; UspA domain-containing protein 3369858 6111980 PputW619_3029 Pseudomonas putida W619 UspA domain-containing protein YP_001749890.1 3368932 R 390235 CDS YP_001749891.1 170722203 6111981 3370043..3370591 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_3341 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3370591 6111981 PputW619_3030 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749891.1 3370043 D 390235 CDS YP_001749892.1 170722204 6111982 complement(3370619..3371545) 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pfo:Pfl_3347 UspA; UspA domain-containing protein 3371545 6111982 PputW619_3031 Pseudomonas putida W619 UspA domain-containing protein YP_001749892.1 3370619 R 390235 CDS YP_001749893.1 170722205 6111983 3371746..3372819 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_3346 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 3372819 6111983 PputW619_3032 Pseudomonas putida W619 alcohol dehydrogenase YP_001749893.1 3371746 D 390235 CDS YP_001749894.1 170722206 6111984 3372901..3373089 1 NC_010501.1 hypothetical protein 3373089 6111984 PputW619_3033 Pseudomonas putida W619 hypothetical protein YP_001749894.1 3372901 D 390235 CDS YP_001749895.1 170722207 6111985 3373091..3373900 1 NC_010501.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pst:PSPTO_1666 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 3373900 6111985 PputW619_3034 Pseudomonas putida W619 Crp/FNR family transcriptional regulator YP_001749895.1 3373091 D 390235 CDS YP_001749896.1 170722208 6111986 3373958..3374794 1 NC_010501.1 PFAM: UspA domain protein; KEGG: mes:Meso_2248 UspA; UspA domain-containing protein 3374794 6111986 PputW619_3035 Pseudomonas putida W619 UspA domain-containing protein YP_001749896.1 3373958 D 390235 CDS YP_001749897.1 170722209 6111987 complement(3374877..3375821) 1 NC_010501.1 PFAM: protein of unknown function RIO1; KEGG: pfl:PFL_0708 hypothetical protein; hypothetical protein 3375821 6111987 PputW619_3036 Pseudomonas putida W619 hypothetical protein YP_001749897.1 3374877 R 390235 CDS YP_001749898.1 170722210 6111988 complement(3375859..3376302) 1 NC_010501.1 PFAM: transmembrane pair domain protein; KEGG: eca:ECA0906 hypothetical protein; transmembrane pair domain-containing protein 3376302 6111988 PputW619_3037 Pseudomonas putida W619 transmembrane pair domain-containing protein YP_001749898.1 3375859 R 390235 CDS YP_001749899.1 170722211 6111990 complement(3377326..3378231) 1 NC_010501.1 KEGG: pfo:Pfl_1375 hypothetical protein; hypothetical protein 3378231 6111990 PputW619_3040 Pseudomonas putida W619 hypothetical protein YP_001749899.1 3377326 R 390235 CDS YP_001749900.1 170722212 6111991 complement(3378228..3379571) 1 NC_010501.1 KEGG: pfo:Pfl_1376 hypothetical protein; hypothetical protein 3379571 6111991 PputW619_3041 Pseudomonas putida W619 hypothetical protein YP_001749900.1 3378228 R 390235 CDS YP_001749901.1 170722213 6111992 3379749..3380000 1 NC_010501.1 KEGG: pen:PSEEN3318 lipoprotein; lipoprotein 3380000 6111992 PputW619_3042 Pseudomonas putida W619 lipoprotein YP_001749901.1 3379749 D 390235 CDS YP_001749902.1 170722214 6111993 3380139..3380858 1 NC_010501.1 KEGG: pfl:PFL_1562 lipoprotein, putative; putative lipoprotein 3380858 6111993 PputW619_3043 Pseudomonas putida W619 putative lipoprotein YP_001749902.1 3380139 D 390235 CDS YP_001749903.1 170722215 6111994 complement(3380855..3381775) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2646 transcriptional regulator, LysR family; LysR family transcriptional regulator 3381775 6111994 PputW619_3044 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749903.1 3380855 R 390235 CDS YP_001749904.1 170722216 6111995 3381902..3382741 1 NC_010501.1 KEGG: psa:PST_1693 hypothetical protein; hypothetical protein 3382741 6111995 PputW619_3045 Pseudomonas putida W619 hypothetical protein YP_001749904.1 3381902 D 390235 CDS YP_001749905.1 170722217 6111996 3382763..3383926 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: psb:Psyr_2176 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase domain-containing protein 3383926 6111996 PputW619_3046 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001749905.1 3382763 D 390235 CDS YP_001749906.1 170722218 6111997 3383937..3385286 1 NC_010501.1 PFAM: MmgE/PrpD family protein; KEGG: pfl:PFL_2649 MmgE/PrpD family protein, putative; MmgE/PrpD family protein 3385286 6111997 PputW619_3047 Pseudomonas putida W619 MmgE/PrpD family protein YP_001749906.1 3383937 D 390235 CDS YP_001749907.1 170722219 6111998 3385305..3386504 1 NC_010501.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: psa:PST_1697 putative CaiB/BaiF-family enzyme; L-carnitine dehydratase/bile acid-inducible protein F 3386504 6111998 PputW619_3048 Pseudomonas putida W619 L-carnitine dehydratase/bile acid-inducible protein F YP_001749907.1 3385305 D 390235 CDS YP_001749908.1 170722220 6111999 3386501..3387319 1 NC_010501.1 PFAM: HpcH/HpaI aldolase; KEGG: pfl:PFL_2651 citrate lyase, beta subunit; HpcH/HpaI aldolase 3387319 6111999 PputW619_3049 Pseudomonas putida W619 HpcH/HpaI aldolase YP_001749908.1 3386501 D 390235 CDS YP_001749909.1 170722221 6112000 3387440..3388438 1 NC_010501.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfl:PFL_2658 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter subunit DctP 3388438 6112000 PputW619_3050 Pseudomonas putida W619 TRAP dicarboxylate transporter subunit DctP YP_001749909.1 3387440 D 390235 CDS YP_001749910.1 170722222 6112001 3388507..3389139 1 NC_010501.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfl:PFL_2659 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ 3389139 6112001 PputW619_3051 Pseudomonas putida W619 tripartite ATP-independent periplasmic transporter DctQ YP_001749910.1 3388507 D 390235 CDS YP_001749911.1 170722223 6112002 3389139..3390422 1 NC_010501.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pfl:PFL_2660 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter subunit DctM 3390422 6112002 PputW619_3052 Pseudomonas putida W619 TRAP dicarboxylate transporter subunit DctM YP_001749911.1 3389139 D 390235 CDS YP_001749912.1 170722224 6112003 complement(3390472..3391395) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator 3391395 6112003 PputW619_3053 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749912.1 3390472 R 390235 CDS YP_001749913.1 170722225 6112004 complement(3391398..3393188) 1 NC_010501.1 KEGG: pfl:PFL_5184 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3393188 6112004 PputW619_3054 Pseudomonas putida W619 gamma-glutamyltransferase YP_001749913.1 3391398 R 390235 CDS YP_001749914.1 170722226 6112005 3393640..3394998 1 NC_010501.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3394998 6112005 PputW619_3055 Pseudomonas putida W619 hydroxydechloroatrazine ethylaminohydrolase YP_001749914.1 3393640 D 390235 CDS YP_001749915.1 170722227 6112006 complement(3395066..3395797) 1 NC_010501.1 KEGG: psb:Psyr_0361 hypothetical protein; hypothetical protein 3395797 6112006 PputW619_3056 Pseudomonas putida W619 hypothetical protein YP_001749915.1 3395066 R 390235 CDS YP_001749916.1 170722228 6112007 complement(3395794..3396342) 1 NC_010501.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3396342 6112007 PputW619_3057 Pseudomonas putida W619 RNA polymerase sigma factor YP_001749916.1 3395794 R 390235 CDS YP_001749917.1 170722229 6112008 complement(3396448..3396981) 1 NC_010501.1 KEGG: pfo:Pfl_3745 hypothetical protein; hypothetical protein 3396981 6112008 PputW619_3058 Pseudomonas putida W619 hypothetical protein YP_001749917.1 3396448 R 390235 CDS YP_001749918.1 170722230 6112009 complement(3397109..3398467) 1 NC_010501.1 PFAM: Na+/H+ antiporter NhaA; KEGG: bpt:Bpet2421 Na(+)/H(+) antiporter 1; Na+/H+ antiporter NhaA 3398467 6112009 PputW619_3059 Pseudomonas putida W619 Na+/H+ antiporter NhaA YP_001749918.1 3397109 R 390235 CDS YP_001749919.1 170722231 6112010 3398868..3400760 1 NC_010501.1 KEGG: pen:PSEEN2489 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3400760 6112010 PputW619_3060 Pseudomonas putida W619 penicillin-binding protein 2 YP_001749919.1 3398868 D 390235 CDS YP_001749920.1 170722232 6112011 3400859..3402166 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3030 periplamic phosphate-binding protein; OmpA/MotB domain-containing protein 3402166 6112011 PputW619_3061 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001749920.1 3400859 D 390235 CDS YP_001749921.1 170722233 6112012 3402339..3403403 1 NC_010501.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN3035 hypothetical protein; integral membrane protein TerC 3403403 6112012 PputW619_3062 Pseudomonas putida W619 integral membrane protein TerC YP_001749921.1 3402339 D 390235 CDS YP_001749922.1 170722234 6112013 complement(3403465..3404694) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3343 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3404694 6112013 PputW619_3063 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001749922.1 3403465 R 390235 CDS YP_001749923.1 170722235 6112014 3404834..3405760 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 3405760 6112014 PputW619_3064 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749923.1 3404834 D 390235 CDS YP_001749924.1 170722236 6112015 3405927..3407081 1 NC_010501.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN3349 cysteine desulfurase; class V aminotransferase 3407081 6112015 PputW619_3065 Pseudomonas putida W619 class V aminotransferase YP_001749924.1 3405927 D 390235 CDS YP_001749925.1 170722237 6112016 complement(3407159..3407812) 1 NC_010501.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 3407812 6112016 PputW619_3066 Pseudomonas putida W619 dihydropteridine reductase YP_001749925.1 3407159 R 390235 CDS YP_001749926.1 170722238 6112017 3407915..3408805 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2306 transcriptional regulator, LysR family; LysR family transcriptional regulator 3408805 6112017 PputW619_3067 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749926.1 3407915 D 390235 CDS YP_001749927.1 170722239 6112018 3408888..3409718 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN2304 transcriptional regulator, AraC family; AraC family transcriptional regulator 3409718 6112018 PputW619_3068 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749927.1 3408888 D 390235 CDS YP_001749928.1 170722240 6112019 3409769..3410353 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2303 transporter, LysE family; lysine exporter protein LysE/YggA 3410353 6112019 PputW619_3069 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001749928.1 3409769 D 390235 CDS YP_001749929.1 170722241 6112020 complement(3410415..3411614) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2302 sugar exporter, MFS family; sugar efflux transporter 3411614 6112020 PputW619_3070 Pseudomonas putida W619 sugar efflux transporter YP_001749929.1 3410415 R 390235 CDS YP_001749930.1 170722242 6112021 complement(3411836..3412888) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_1816 oxidoreductase, zinc-binding; alcohol dehydrogenase 3412888 6112021 PputW619_3071 Pseudomonas putida W619 alcohol dehydrogenase YP_001749930.1 3411836 R 390235 CDS YP_001749931.1 170722243 6112022 3413070..3413975 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfo:Pfl_4119 transcriptional regulator, AraC family; AraC family transcriptional regulator 3413975 6112022 PputW619_3072 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749931.1 3413070 D 390235 CDS YP_001749932.1 170722244 6112023 complement(3414011..3414607) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN2158 transcriptional regulator, TetR family; TetR family transcriptional regulator 3414607 6112023 PputW619_3073 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749932.1 3414011 R 390235 CDS YP_001749933.1 170722245 6112024 3414701..3415294 1 NC_010501.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN2157 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase 3415294 6112024 PputW619_3074 Pseudomonas putida W619 NAD(P)H dehydrogenase YP_001749933.1 3414701 D 390235 CDS YP_001749934.1 170722246 6112025 complement(3415302..3415847) 1 NC_010501.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pen:PSEEN2137 2'-5' RNA ligase; 2'-5' RNA ligase 3415847 6112025 PputW619_3075 Pseudomonas putida W619 2'-5' RNA ligase YP_001749934.1 3415302 R 390235 CDS YP_001749935.1 170722247 6112026 3416017..3416916 1 NC_010501.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN2136 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 3416916 6112026 PputW619_3076 Pseudomonas putida W619 aspartyl/asparaginyl beta-hydroxylase YP_001749935.1 3416017 D 390235 CDS YP_001749936.1 170722248 6112027 3416940..3417509 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2134 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3417509 6112027 PputW619_3077 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749936.1 3416940 D 390235 CDS YP_001749937.1 170722249 6112028 3417623..3418462 1 NC_010501.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3418462 6112028 PputW619_3078 Pseudomonas putida W619 putative glutathione S-transferase YghU YP_001749937.1 3417623 D 390235 CDS YP_001749938.1 170722250 6112029 3418631..3420334 1 NC_010501.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3420334 6112029 PputW619_3079 Pseudomonas putida W619 amidase YP_001749938.1 3418631 D 390235 CDS YP_001749939.1 170722251 6112030 complement(3420454..3420651) 1 NC_010501.1 KEGG: pap:PSPA7_4876 chemotactic transducer PctA; chemotactic transducer PctA 3420651 6112030 PputW619_3080 Pseudomonas putida W619 chemotactic transducer PctA YP_001749939.1 3420454 R 390235 CDS YP_001749940.1 170722252 6112031 3420672..3420962 1 NC_010501.1 KEGG: bbr:BB2376 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase-like protein 3420962 6112031 PputW619_3081 Pseudomonas putida W619 pyrroline-5-carboxylate reductase-like protein YP_001749940.1 3420672 D 390235 CDS YP_001749941.1 170722253 6112032 3421074..3421385 1 NC_010501.1 KEGG: pmy:Pmen_0222 transcriptional regulator, LysR family; LysR family transcriptional regulator 3421385 6112032 PputW619_3082 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749941.1 3421074 D 390235 CDS YP_001749942.1 170722254 6112033 complement(3421548..3422057) 1 NC_010501.1 PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pap:PSPA7_2621 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP 3422057 6112033 PputW619_3083 Pseudomonas putida W619 ProQ activator of osmoprotectant transporter ProP YP_001749942.1 3421548 R 390235 CDS YP_001749943.1 170722255 6112034 complement(3422163..3423545) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_1890 transcriptional regulator, GntR family with aminotransferase domain; transcriptional regulator 3423545 6112034 PputW619_3084 Pseudomonas putida W619 transcriptional regulator YP_001749943.1 3422163 R 390235 CDS YP_001749944.1 170722256 6112035 3423667..3424536 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6; hypothetical protein 3424536 6112035 PputW619_3085 Pseudomonas putida W619 hypothetical protein YP_001749944.1 3423667 D 390235 CDS YP_001749945.1 170722257 6112036 complement(3424558..3425013) 1 NC_010501.1 hypothetical protein 3425013 6112036 PputW619_3086 Pseudomonas putida W619 hypothetical protein YP_001749945.1 3424558 R 390235 CDS YP_001749946.1 170722258 6112037 complement(3425190..3425576) 1 NC_010501.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_0840 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3425576 6112037 PputW619_3087 Pseudomonas putida W619 antibiotic biosynthesis monooxygenase YP_001749946.1 3425190 R 390235 CDS YP_001749947.1 170722259 6112038 3425929..3426417 1 NC_010501.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pst:PSPTO_2866 cupin family protein; cupin 3426417 6112038 PputW619_3088 Pseudomonas putida W619 cupin YP_001749947.1 3425929 D 390235 CDS YP_001749948.1 170722260 6112039 3426414..3427211 1 NC_010501.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pst:PSPTO_2865 4-carboxymuconolactone decarboxylase, putative; carboxymuconolactone decarboxylase 3427211 6112039 PputW619_3089 Pseudomonas putida W619 carboxymuconolactone decarboxylase YP_001749948.1 3426414 D 390235 CDS YP_001749949.1 170722261 6112040 complement(3427356..3428273) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_2864 transcriptional regulator, LysR family; LysR family transcriptional regulator 3428273 6112040 PputW619_3090 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749949.1 3427356 R 390235 CDS YP_001749950.1 170722262 6112041 complement(3428872..3429129) 1 NC_010501.1 KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein 3429129 6112041 PputW619_3091 Pseudomonas putida W619 hypothetical protein YP_001749950.1 3428872 R 390235 CDS YP_001749951.1 170722263 6112042 complement(3429239..3429709) 1 NC_010501.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 3429709 6112042 PputW619_3092 Pseudomonas putida W619 cyanate hydratase YP_001749951.1 3429239 R 390235 CDS YP_001749952.1 170722264 6112043 complement(3429749..3430408) 1 NC_010501.1 PFAM: carbonic anhydrase; KEGG: pen:PSEEN3600 carbonic anhydrase; carbonate dehydratase 3430408 6112043 PputW619_3093 Pseudomonas putida W619 carbonate dehydratase YP_001749952.1 3429749 R 390235 CDS YP_001749953.1 170722265 6112044 3430519..3431406 1 NC_010501.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; DNA-binding transcriptional regulator CynR 3431406 6112044 PputW619_3094 Pseudomonas putida W619 DNA-binding transcriptional regulator CynR YP_001749953.1 3430519 D 390235 CDS YP_001749954.1 170722266 6112045 complement(3431577..3432053) 1 NC_010501.1 PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein; hypothetical protein 3432053 6112045 PputW619_3095 Pseudomonas putida W619 hypothetical protein YP_001749954.1 3431577 R 390235 CDS YP_001749955.1 170722267 6112046 complement(3432402..3432878) 1 NC_010501.1 PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein; hypothetical protein 3432878 6112046 PputW619_3096 Pseudomonas putida W619 hypothetical protein YP_001749955.1 3432402 R 390235 CDS YP_001749956.1 170722268 6112047 complement(3432939..3433508) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: xcv:XCV4432 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 3433508 6112047 PputW619_3097 Pseudomonas putida W619 TetR family transcriptional regulator YP_001749956.1 3432939 R 390235 CDS YP_001749957.1 170722269 6112048 3434194..3435210 1 NC_010501.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN5387 lipase; alpha/beta hydrolase domain-containing protein 3435210 6112048 PputW619_3098 Pseudomonas putida W619 alpha/beta hydrolase domain-containing protein YP_001749957.1 3434194 D 390235 CDS YP_001749958.1 170722270 6112049 complement(3435338..3435673) 1 NC_010501.1 KEGG: psb:Psyr_0096 transposase, IS4; transposase, IS4 3435673 6112049 PputW619_3099 Pseudomonas putida W619 transposase, IS4 YP_001749958.1 3435338 R 390235 CDS YP_001749959.1 170722271 6112050 complement(3435738..3436226) 1 NC_010501.1 KEGG: psa:PST_0667 hypothetical protein; hypothetical protein 3436226 6112050 PputW619_3100 Pseudomonas putida W619 hypothetical protein YP_001749959.1 3435738 R 390235 CDS YP_001749960.1 170722272 6112051 3436844..3437086 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3437086 6112051 PputW619_3101 Pseudomonas putida W619 hypothetical protein YP_001749960.1 3436844 D 390235 CDS YP_001749961.1 170722273 6112052 3437231..3437494 1 NC_010501.1 KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 3437494 6112052 PputW619_3102 Pseudomonas putida W619 hypothetical protein YP_001749961.1 3437231 D 390235 CDS YP_001749962.1 170722274 6112053 3437889..3438404 1 NC_010501.1 PFAM: protein of unknown function UPF0157; KEGG: pap:PSPA7_0920 protein YqkA; hypothetical protein 3438404 6112053 PputW619_3103 Pseudomonas putida W619 hypothetical protein YP_001749962.1 3437889 D 390235 CDS YP_001749963.1 170722275 6112054 complement(3438595..3439044) 1 NC_010501.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bcn:Bcen_2902 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3439044 6112054 PputW619_3104 Pseudomonas putida W619 alkylhydroperoxidase YP_001749963.1 3438595 R 390235 CDS YP_001749964.1 170722276 6112055 complement(3439156..3439821) 1 NC_010501.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbl:Sbal_4073 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase 3439821 6112055 PputW619_3105 Pseudomonas putida W619 NAD(P)H dehydrogenase YP_001749964.1 3439156 R 390235 CDS YP_001749965.1 170722277 6112056 complement(3439852..3440334) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3439 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3440334 6112056 PputW619_3106 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749965.1 3439852 R 390235 CDS YP_001749966.1 170722278 6112057 3440425..3441861 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: eca:ECA2654 GntR-family transcriptional regulator; transcriptional regulator 3441861 6112057 PputW619_3107 Pseudomonas putida W619 transcriptional regulator YP_001749966.1 3440425 D 390235 CDS YP_001749967.1 170722279 6112058 complement(3441854..3442333) 1 NC_010501.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: eca:ECA2655 hypothetical protein; alkylhydroperoxidase 3442333 6112058 PputW619_3108 Pseudomonas putida W619 alkylhydroperoxidase YP_001749967.1 3441854 R 390235 CDS YP_001749968.1 170722280 6112059 complement(3442727..3443176) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_51560 possible acetyltransferase; N-acetyltransferase GCN5 3443176 6112059 PputW619_3109 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001749968.1 3442727 R 390235 CDS YP_001749969.1 170722281 6112060 complement(3443257..3444195) 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mgi:Mflv_5240 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 3444195 6112060 PputW619_3110 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001749969.1 3443257 R 390235 CDS YP_001749970.1 170722282 6112061 complement(3444192..3445559) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6694 major facilitator superfamily MFS_1; major facilitator transporter 3445559 6112061 PputW619_3111 Pseudomonas putida W619 major facilitator transporter YP_001749970.1 3444192 R 390235 CDS YP_001749971.1 170722283 6112062 complement(3445644..3447227) 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pap:PSPA7_3072 probable aldehyde dehydrogenase; aldehyde dehydrogenase 3447227 6112062 PputW619_3112 Pseudomonas putida W619 aldehyde dehydrogenase YP_001749971.1 3445644 R 390235 CDS YP_001749972.1 170722284 6112063 complement(3447329..3448273) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_0863 transcriptional regulator, LysR family; LysR family transcriptional regulator 3448273 6112063 PputW619_3113 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749972.1 3447329 R 390235 CDS YP_001749973.1 170722285 6112064 3448389..3449570 1 NC_010501.1 KEGG: acb:A1S_1794 hypothetical protein; hypothetical protein 3449570 6112064 PputW619_3114 Pseudomonas putida W619 hypothetical protein YP_001749973.1 3448389 D 390235 CDS YP_001749974.1 170722286 6112065 3449620..3451008 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_2426 putative major facilitator superfamily (MFS) transporter; major facilitator transporter 3451008 6112065 PputW619_3115 Pseudomonas putida W619 major facilitator transporter YP_001749974.1 3449620 D 390235 CDS YP_001749975.1 170722287 6112066 3451040..3452827 1 NC_010501.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3452827 6112066 PputW619_3116 Pseudomonas putida W619 dihydroxy-acid dehydratase YP_001749975.1 3451040 D 390235 CDS YP_001749976.1 170722288 6112067 complement(3453021..3453491) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: bja:bll1047 transcriptional regulatory protein; MarR family transcriptional regulator 3453491 6112067 PputW619_3117 Pseudomonas putida W619 MarR family transcriptional regulator YP_001749976.1 3453021 R 390235 CDS YP_001749977.1 170722289 6112068 3453778..3454731 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin; ferredoxin 3454731 6112068 PputW619_3118 Pseudomonas putida W619 ferredoxin YP_001749977.1 3453778 D 390235 CDS YP_001749978.1 170722290 6112069 3454768..3455844 1 NC_010501.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: dac:Daci_1355 Rieske (2Fe-2S) domain protein; vanillate monooxygenase 3455844 6112069 PputW619_3119 Pseudomonas putida W619 vanillate monooxygenase YP_001749978.1 3454768 D 390235 CDS YP_001749979.1 170722291 6112070 3456151..3457485 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3480 major facilitator family transporter; major facilitator transporter 3457485 6112070 PputW619_3120 Pseudomonas putida W619 major facilitator transporter YP_001749979.1 3456151 D 390235 CDS YP_001749980.1 170722292 6112071 3457520..3458794 1 NC_010501.1 PFAM: outer membrane porin; KEGG: psb:Psyr_2730 outer membrane porin; outer membrane porin 3458794 6112071 PputW619_3121 Pseudomonas putida W619 outer membrane porin YP_001749980.1 3457520 D 390235 CDS YP_001749981.1 170722293 6112072 3459486..3459728 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3459728 6112072 PputW619_3122 Pseudomonas putida W619 hypothetical protein YP_001749981.1 3459486 D 390235 CDS YP_001749982.1 170722294 6112073 3459873..3460136 1 NC_010501.1 KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 3460136 6112073 PputW619_3123 Pseudomonas putida W619 hypothetical protein YP_001749982.1 3459873 D 390235 CDS YP_001749983.1 170722295 6112074 complement(3461374..3462708) 1 NC_010501.1 KEGG: fgr:FG02793.1 hypothetical protein; hypothetical protein 3462708 6112074 PputW619_3124 Pseudomonas putida W619 hypothetical protein YP_001749983.1 3461374 R 390235 CDS YP_001749984.1 170722296 6112075 3463042..3463947 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2371 transcriptional regulator, LysR family; LysR family transcriptional regulator 3463947 6112075 PputW619_3125 Pseudomonas putida W619 LysR family transcriptional regulator YP_001749984.1 3463042 D 390235 CDS YP_001749985.1 170722297 6112076 3464139..3464516 1 NC_010501.1 KEGG: rme:Rmet_4294 protein of unknown function DUF1486; hypothetical protein 3464516 6112076 PputW619_3126 Pseudomonas putida W619 hypothetical protein YP_001749985.1 3464139 D 390235 CDS YP_001749986.1 170722298 6112077 3464649..3465410 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_2468 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3465410 6112077 PputW619_3127 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749986.1 3464649 D 390235 CDS YP_001749987.1 170722299 6112078 3465490..3466047 1 NC_010501.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: scl:sce7817 flavoprotein oxygenases, DIM6/NTAB family; flavin reductase domain-containing protein 3466047 6112078 PputW619_3128 Pseudomonas putida W619 flavin reductase domain-containing protein YP_001749987.1 3465490 D 390235 CDS YP_001749988.1 170722300 6112079 complement(3466065..3466964) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL1967 putative AraC family transcriptional regulator; AraC family transcriptional regulator 3466964 6112079 PputW619_3129 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749988.1 3466065 R 390235 CDS YP_001749989.1 170722301 6112080 complement(3467173..3467427) 1 NC_010501.1 KEGG: ade:Adeh_3207 hypothetical protein; hypothetical protein 3467427 6112080 PputW619_3130 Pseudomonas putida W619 hypothetical protein YP_001749989.1 3467173 R 390235 CDS YP_001749990.1 170722302 6112081 complement(3467455..3468192) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_2903 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3468192 6112081 PputW619_3131 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001749990.1 3467455 R 390235 CDS YP_001749991.1 170722303 6112082 3468488..3468919 1 NC_010501.1 PFAM: DoxX family protein; KEGG: pfl:PFL_2372 SURF4 domain protein; DoxX family protein 3468919 6112082 PputW619_3132 Pseudomonas putida W619 DoxX family protein YP_001749991.1 3468488 D 390235 CDS YP_001749992.1 170722304 6112083 3468978..3469901 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_4293 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3469901 6112083 PputW619_3133 Pseudomonas putida W619 alcohol dehydrogenase YP_001749992.1 3468978 D 390235 CDS YP_001749993.1 170722305 6112084 3470150..3470512 1 NC_010501.1 KEGG: pfo:Pfl_3548 hypothetical protein; hypothetical protein 3470512 6112084 PputW619_3134 Pseudomonas putida W619 hypothetical protein YP_001749993.1 3470150 D 390235 CDS YP_001749994.1 170722306 6112085 3470648..3471556 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA2047 probable transcriptional regulator; AraC family transcriptional regulator 3471556 6112085 PputW619_3135 Pseudomonas putida W619 AraC family transcriptional regulator YP_001749994.1 3470648 D 390235 CDS YP_001749995.1 170722307 6112086 3472052..3473185 1 NC_010501.1 KEGG: pen:PSEEN2741 serine-pyruvate transaminase; serine-pyruvate transaminase 3473185 6112086 PputW619_3136 Pseudomonas putida W619 serine-pyruvate transaminase YP_001749995.1 3472052 D 390235 CDS YP_001749996.1 170722308 6112087 complement(3473246..3474106) 1 NC_010501.1 PFAM: SCP-like extracellular; KEGG: pfo:Pfl_2104 allergen V5/TPX-1-like; hypothetical protein 3474106 6112087 PputW619_3137 Pseudomonas putida W619 hypothetical protein YP_001749996.1 3473246 R 390235 CDS YP_001749997.1 170722309 6112088 3474392..3475429 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pen:PSEEN2246 diguanylate cyclase (GGDEF domain); GAF sensor-containing diguanylate cyclase 3475429 6112088 PputW619_3138 Pseudomonas putida W619 GAF sensor-containing diguanylate cyclase YP_001749997.1 3474392 D 390235 CDS YP_001749998.1 170722310 6112089 complement(3475578..3476963) 1 NC_010501.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mms:mma_1240 cytosine deaminase; amidohydrolase 3476963 6112089 PputW619_3139 Pseudomonas putida W619 amidohydrolase YP_001749998.1 3475578 R 390235 CDS YP_001749999.1 170722311 6112090 complement(3477001..3478374) 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: mms:mma_1239 xanthine permease (NSC2 family); xanthine permease 3478374 6112090 PputW619_3140 Pseudomonas putida W619 xanthine permease YP_001749999.1 3477001 R 390235 CDS YP_001750000.1 170722312 6112091 3478513..3479403 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2721 transcriptional regulator, LysR-family; LysR family transcriptional regulator 3479403 6112091 PputW619_3141 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750000.1 3478513 D 390235 CDS YP_001750001.1 170722313 6112092 complement(3479424..3479840) 1 NC_010501.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: psa:PST_2526 YeeE/YedE family protein; hypothetical protein 3479840 6112092 PputW619_3142 Pseudomonas putida W619 hypothetical protein YP_001750001.1 3479424 R 390235 CDS YP_001750002.1 170722314 6112093 complement(3479843..3480277) 1 NC_010501.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: psa:PST_2527 YeeE/YedE family protein; hypothetical protein 3480277 6112093 PputW619_3143 Pseudomonas putida W619 hypothetical protein YP_001750002.1 3479843 R 390235 CDS YP_001750003.1 170722315 6112094 complement(3480372..3481691) 1 NC_010501.1 PFAM: beta-lactamase; KEGG: reu:Reut_B4421 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase 3481691 6112094 PputW619_3144 Pseudomonas putida W619 6-aminohexanoate-dimer hydrolase YP_001750003.1 3480372 R 390235 CDS YP_001750004.1 170722316 6112095 complement(3481711..3483564) 1 NC_010501.1 PFAM: protein of unknown function DUF1302; KEGG: pmy:Pmen_1720 protein of unknown function DUF1302; hypothetical protein 3483564 6112095 PputW619_3145 Pseudomonas putida W619 hypothetical protein YP_001750004.1 3481711 R 390235 CDS YP_001750005.1 170722317 6112096 complement(3483771..3484202) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pfl:PFL_0291 thioesterase family protein domain protein; thioesterase superfamily protein 3484202 6112096 PputW619_3146 Pseudomonas putida W619 thioesterase superfamily protein YP_001750005.1 3483771 R 390235 CDS YP_001750006.1 170722318 6112097 complement(3484205..3485368) 1 NC_010501.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: psa:PST_0312 probable iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 3485368 6112097 PputW619_3147 Pseudomonas putida W619 iron-containing alcohol dehydrogenase YP_001750006.1 3484205 R 390235 CDS YP_001750007.1 170722319 6112098 complement(3485410..3487197) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_0380 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3487197 6112098 PputW619_3148 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001750007.1 3485410 R 390235 CDS YP_001750008.1 170722320 6112099 complement(3487194..3488432) 1 NC_010501.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pfl:PFL_0290 3-hydroxyacyl-CoA dehydrogenase family protein; 3-hydroxybutyryl-CoA epimerase 3488432 6112099 PputW619_3149 Pseudomonas putida W619 3-hydroxybutyryl-CoA epimerase YP_001750008.1 3487194 R 390235 CDS YP_001750009.1 170722321 6112100 3488533..3489432 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_0378 transcriptional regulator, LysR family; LysR family transcriptional regulator 3489432 6112100 PputW619_3150 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750009.1 3488533 D 390235 CDS YP_001750010.1 170722322 6112101 3489534..3491492 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pmy:Pmen_1715 beta-lactamase domain protein; beta-lactamase domain-containing protein 3491492 6112101 PputW619_3151 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001750010.1 3489534 D 390235 CDS YP_001750011.1 170722323 6112102 complement(3491511..3491810) 1 NC_010501.1 KEGG: pmy:Pmen_1717 hypothetical protein; hypothetical protein 3491810 6112102 PputW619_3152 Pseudomonas putida W619 hypothetical protein YP_001750011.1 3491511 R 390235 CDS YP_001750012.1 170722324 6112103 complement(3491803..3492189) 1 NC_010501.1 PFAM: protein of unknown function DUF202; KEGG: pmy:Pmen_1718 protein of unknown function DUF202; hypothetical protein 3492189 6112103 PputW619_3153 Pseudomonas putida W619 hypothetical protein YP_001750012.1 3491803 R 390235 CDS YP_001750013.1 170722325 6112104 complement(3492218..3493564) 1 NC_010501.1 PFAM: protein of unknown function DUF1329; KEGG: pmy:Pmen_1719 protein of unknown function DUF1329; hypothetical protein 3493564 6112104 PputW619_3154 Pseudomonas putida W619 hypothetical protein YP_001750013.1 3492218 R 390235 CDS YP_001750014.1 170722326 6112105 3493720..3494682 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_1721 transcriptional regulator, LysR family; LysR family transcriptional regulator 3494682 6112105 PputW619_3155 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750014.1 3493720 D 390235 CDS YP_001750015.1 170722327 6112106 complement(3494667..3495983) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1722 major facilitator superfamily MFS_1; major facilitator transporter 3495983 6112106 PputW619_3156 Pseudomonas putida W619 major facilitator transporter YP_001750015.1 3494667 R 390235 CDS YP_001750016.1 170722328 6112107 complement(3496047..3497210) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pmy:Pmen_1723 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3497210 6112107 PputW619_3157 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001750016.1 3496047 R 390235 CDS YP_001750017.1 170722329 6112108 complement(3497226..3498773) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pmy:Pmen_1724 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3498773 6112108 PputW619_3158 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001750017.1 3497226 R 390235 CDS YP_001750018.1 170722330 6112109 3498980..3499771 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pfo:Pfl_3511 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3499771 6112109 PputW619_3159 Pseudomonas putida W619 extracellular solute-binding protein YP_001750018.1 3498980 D 390235 CDS YP_001750019.1 170722331 6112110 complement(3499807..3501063) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pap:PSPA7_1272 outer membrane porin OprE; outer membrane porin 3501063 6112110 PputW619_3160 Pseudomonas putida W619 outer membrane porin YP_001750019.1 3499807 R 390235 CDS YP_001750020.1 170722332 6112111 complement(3501129..3502433) 1 NC_010501.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pfl:PFL_2499 citrate transporter; CitMHS family citrate/H+ symporter 3502433 6112111 PputW619_3161 Pseudomonas putida W619 CitMHS family citrate/H+ symporter YP_001750020.1 3501129 R 390235 CDS YP_001750021.1 170722333 6112112 complement(3502559..3503875) 1 NC_010501.1 PFAM: sodium:dicarboxylate symporter; KEGG: pap:PSPA7_1270 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 3503875 6112112 PputW619_3162 Pseudomonas putida W619 sodium:dicarboxylate symporter YP_001750021.1 3502559 R 390235 CDS YP_001750022.1 170722334 6112113 complement(3503953..3505032) 1 NC_010501.1 PFAM: protein of unknown function DUF453; KEGG: pap:PSPA7_1269 FldA protein; hypothetical protein 3505032 6112113 PputW619_3163 Pseudomonas putida W619 hypothetical protein YP_001750022.1 3503953 R 390235 CDS YP_001750023.1 170722335 6112114 3505180..3506073 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_1268 putative HTH-type transcriptional regulator YbhD; LysR family transcriptional regulator 3506073 6112114 PputW619_3164 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750023.1 3505180 D 390235 CDS YP_001750024.1 170722336 6112115 complement(3506170..3506949) 1 NC_010501.1 PFAM: NLPA lipoprotein; KEGG: aav:Aave_1575 lipoprotein, YaeC family; NLPA lipoprotein 3506949 6112115 PputW619_3165 Pseudomonas putida W619 NLPA lipoprotein YP_001750024.1 3506170 R 390235 CDS YP_001750025.1 170722337 6112116 complement(3506946..3508121) 1 NC_010501.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 3508121 solA 6112116 solA Pseudomonas putida W619 N-methyltryptophan oxidase YP_001750025.1 3506946 R 390235 CDS YP_001750026.1 170722338 6112117 complement(3508226..3509470) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3762 general substrate transporter:major facilitator superfamily; major facilitator transporter 3509470 6112117 PputW619_3167 Pseudomonas putida W619 major facilitator transporter YP_001750026.1 3508226 R 390235 CDS YP_001750027.1 170722339 6112118 3509586..3510515 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA0922 LysR-family transcriptional regulator; LysR family transcriptional regulator 3510515 6112118 PputW619_3168 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750027.1 3509586 D 390235 CDS YP_001750028.1 170722340 6112119 complement(3510512..3511459) 1 NC_010501.1 PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator 3511459 6112119 PputW619_3169 Pseudomonas putida W619 MerR family transcriptional regulator YP_001750028.1 3510512 R 390235 CDS YP_001750029.1 170722341 6112120 3511556..3512002 1 NC_010501.1 KEGG: psa:PST_1970 sensory box protein, putative; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3512002 6112120 PputW619_3170 Pseudomonas putida W619 putative PAS/PAC sensor protein YP_001750029.1 3511556 D 390235 CDS YP_001750030.1 170722342 6112121 3512104..3512526 1 NC_010501.1 KEGG: pen:PSEEN2706 hypothetical protein; hypothetical protein 3512526 6112121 PputW619_3171 Pseudomonas putida W619 hypothetical protein YP_001750030.1 3512104 D 390235 CDS YP_001750031.1 170722343 6112122 3512523..3513275 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2705 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3513275 6112122 PputW619_3172 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001750031.1 3512523 D 390235 CDS YP_001750032.1 170722344 6112123 3513283..3514530 1 NC_010501.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN2704 hypothetical protein; amine oxidase 3514530 6112123 PputW619_3173 Pseudomonas putida W619 amine oxidase YP_001750032.1 3513283 D 390235 CDS YP_001750033.1 170722345 6112124 3514527..3515339 1 NC_010501.1 PFAM: protein of unknown function DUF1365; KEGG: pen:PSEEN2703 hypothetical protein; hypothetical protein 3515339 6112124 PputW619_3174 Pseudomonas putida W619 hypothetical protein YP_001750033.1 3514527 D 390235 CDS YP_001750034.1 170722346 6112125 3515311..3516573 1 NC_010501.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2702 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3516573 6112125 PputW619_3175 Pseudomonas putida W619 cyclopropane-fatty-acyl-phospholipid synthase YP_001750034.1 3515311 D 390235 CDS YP_001750035.1 170722347 6112126 3516576..3517064 1 NC_010501.1 KEGG: pen:PSEEN2701 hypothetical protein; hypothetical protein 3517064 6112126 PputW619_3176 Pseudomonas putida W619 hypothetical protein YP_001750035.1 3516576 D 390235 CDS YP_001750036.1 170722348 6112127 complement(3517066..3517602) 1 NC_010501.1 KEGG: pen:PSEEN2738 lipoprotein; lipoprotein 3517602 6112127 PputW619_3177 Pseudomonas putida W619 lipoprotein YP_001750036.1 3517066 R 390235 CDS YP_001750037.1 170722349 6112128 complement(3517605..3518159) 1 NC_010501.1 KEGG: pen:PSEEN2737 hypothetical protein; hypothetical protein 3518159 6112128 PputW619_3178 Pseudomonas putida W619 hypothetical protein YP_001750037.1 3517605 R 390235 CDS YP_001750038.1 170722350 6112129 3518423..3519721 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_2345 transporter, putative; major facilitator transporter 3519721 6112129 PputW619_3179 Pseudomonas putida W619 major facilitator transporter YP_001750038.1 3518423 D 390235 CDS YP_001750039.1 170722351 6112130 complement(3519830..3520582) 1 NC_010501.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN2161 hypothetical protein; integral membrane protein TerC 3520582 6112130 PputW619_3180 Pseudomonas putida W619 integral membrane protein TerC YP_001750039.1 3519830 R 390235 CDS YP_001750040.1 170722352 6112131 complement(3520608..3520847) 1 NC_010501.1 KEGG: pen:PSEEN2160 lipoprotein; lipoprotein 3520847 6112131 PputW619_3181 Pseudomonas putida W619 lipoprotein YP_001750040.1 3520608 R 390235 CDS YP_001750041.1 170722353 6112132 3520982..3521875 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2159 transcriptional activator, LysR family; LysR family transcriptional regulator 3521875 6112132 PputW619_3182 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750041.1 3520982 D 390235 CDS YP_001750042.1 170722354 6112133 3521954..3523165 1 NC_010501.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3523165 6112133 PputW619_3183 Pseudomonas putida W619 serine/threonine transporter SstT YP_001750042.1 3521954 D 390235 CDS YP_001750043.1 170722355 6112134 3523387..3524034 1 NC_010501.1 PFAM: protein of unknown function DUF480; KEGG: pen:PSEEN2299 hypothetical protein; hypothetical protein 3524034 6112134 PputW619_3184 Pseudomonas putida W619 hypothetical protein YP_001750043.1 3523387 D 390235 CDS YP_001750044.1 170722356 6112135 complement(3524040..3524228) 1 NC_010501.1 KEGG: pen:PSEEN2298 hypothetical protein; hypothetical protein 3524228 6112135 PputW619_3185 Pseudomonas putida W619 hypothetical protein YP_001750044.1 3524040 R 390235 CDS YP_001750045.1 170722357 6112136 complement(3524284..3525846) 1 NC_010501.1 TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2297 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F 3525846 6112136 PputW619_3186 Pseudomonas putida W619 alkyl hydroperoxide reductase subunit F YP_001750045.1 3524284 R 390235 CDS YP_001750046.1 170722358 6112137 complement(3525971..3526534) 1 NC_010501.1 TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2296 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); peroxiredoxin 3526534 6112137 PputW619_3187 Pseudomonas putida W619 peroxiredoxin YP_001750046.1 3525971 R 390235 CDS YP_001750047.1 170722359 6112138 complement(3526803..3528158) 1 NC_010501.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3528158 6112138 PputW619_3188 Pseudomonas putida W619 glutathione reductase YP_001750047.1 3526803 R 390235 CDS YP_001750048.1 170722360 6112139 complement(3528257..3529096) 1 NC_010501.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfl:PFL_3399 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 3529096 6112139 PputW619_3189 Pseudomonas putida W619 UTP-glucose-1-phosphate uridylyltransferase YP_001750048.1 3528257 R 390235 CDS YP_001750049.1 170722361 6112140 complement(3529145..3530506) 1 NC_010501.1 KEGG: pmy:Pmen_2354 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 3530506 6112140 PputW619_3190 Pseudomonas putida W619 nucleotide sugar dehydrogenase YP_001750049.1 3529145 R 390235 CDS YP_001750050.1 170722362 6112141 complement(3530607..3531521) 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2293 cytochrome c; cytochrome c class I 3531521 6112141 PputW619_3191 Pseudomonas putida W619 cytochrome c class I YP_001750050.1 3530607 R 390235 CDS YP_001750051.1 170722363 6112142 complement(3531518..3532168) 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2292 cytochrome c; cytochrome c class I 3532168 6112142 PputW619_3192 Pseudomonas putida W619 cytochrome c class I YP_001750051.1 3531518 R 390235 CDS YP_001750052.1 170722364 6112143 complement(3532314..3532673) 1 NC_010501.1 KEGG: pen:PSEEN2290 hypothetical protein; hypothetical protein 3532673 6112143 PputW619_3193 Pseudomonas putida W619 hypothetical protein YP_001750052.1 3532314 R 390235 CDS YP_001750053.1 170722365 6112144 3532834..3533136 1 NC_010501.1 PFAM: Domain of unknown function DUF1883; KEGG: pen:PSEEN2289 hypothetical protein; hypothetical protein 3533136 6112144 PputW619_3194 Pseudomonas putida W619 hypothetical protein YP_001750053.1 3532834 D 390235 CDS YP_001750054.1 170722366 6112145 3533144..3533314 1 NC_010501.1 KEGG: pen:PSEEN2288 hypothetical protein; hypothetical protein 3533314 6112145 PputW619_3195 Pseudomonas putida W619 hypothetical protein YP_001750054.1 3533144 D 390235 CDS YP_001750055.1 170722367 6112146 3533331..3534407 1 NC_010501.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN2287 oxidoreductase, 2-nitropropane dioxygenase family; 2-nitropropane dioxygenase 3534407 6112146 PputW619_3196 Pseudomonas putida W619 2-nitropropane dioxygenase YP_001750055.1 3533331 D 390235 CDS YP_001750056.1 170722368 6112147 3534562..3535320 1 NC_010501.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2286 molybdate ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3535320 6112147 PputW619_3197 Pseudomonas putida W619 molybdenum ABC transporter periplasmic molybdate-binding protein YP_001750056.1 3534562 D 390235 CDS YP_001750057.1 170722369 6112148 3535320..3536000 1 NC_010501.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2285 molybdate ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 3536000 6112148 PputW619_3198 Pseudomonas putida W619 molybdate ABC transporter inner membrane subunit YP_001750057.1 3535320 D 390235 CDS YP_001750058.1 170722370 6112149 3536002..3537093 1 NC_010501.1 KEGG: pen:PSEEN2284 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3537093 6112149 PputW619_3199 Pseudomonas putida W619 molybdate ABC transporter ATPase YP_001750058.1 3536002 D 390235 CDS YP_001750059.1 170722371 6112150 3537151..3538173 1 NC_010501.1 KEGG: pen:PSEEN2283 DNA topoisomerase IB; DNA topoisomerase 3538173 6112150 PputW619_3200 Pseudomonas putida W619 DNA topoisomerase YP_001750059.1 3537151 D 390235 CDS YP_001750060.1 170722372 6112151 3538426..3538623 1 NC_010501.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3538623 6112151 PputW619_3201 Pseudomonas putida W619 carbon storage regulator YP_001750060.1 3538426 D 390235 CDS YP_001750061.1 170722373 6112152 complement(3538686..3539039) 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN2281 response regulator; response regulator receiver protein 3539039 6112152 PputW619_3202 Pseudomonas putida W619 response regulator receiver protein YP_001750061.1 3538686 R 390235 CDS YP_001750062.1 170722374 6112153 complement(3539051..3540496) 1 NC_010501.1 KEGG: pen:PSEEN2280 signal transduction protein; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: AAA ATPase; circadian clock protein KaiC 3540496 6112153 PputW619_3203 Pseudomonas putida W619 circadian clock protein KaiC YP_001750062.1 3539051 R 390235 CDS YP_001750063.1 170722375 6112154 complement(3540502..3541662) 1 NC_010501.1 KEGG: pen:PSEEN2279 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3541662 6112154 PputW619_3204 Pseudomonas putida W619 PAS/PAC sensor signal transduction histidine kinase YP_001750063.1 3540502 R 390235 CDS YP_001750064.1 170722376 6112156 3542152..3542565 1 NC_010501.1 PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein; DoxX family protein 3542565 6112156 PputW619_3205 Pseudomonas putida W619 DoxX family protein YP_001750064.1 3542152 D 390235 CDS YP_001750065.1 170722377 6112157 complement(3542567..3542761) 1 NC_010501.1 KEGG: pen:PSEEN2274 hypothetical protein; hypothetical protein 3542761 6112157 PputW619_3206 Pseudomonas putida W619 hypothetical protein YP_001750065.1 3542567 R 390235 CDS YP_001750066.1 170722378 6112158 3543012..3543686 1 NC_010501.1 PFAM: Alginate lyase 2; KEGG: pap:PSPA7_2458 alginate lyase superfamily; alginate lyase 2 3543686 6112158 PputW619_3207 Pseudomonas putida W619 alginate lyase 2 YP_001750066.1 3543012 D 390235 CDS YP_001750067.1 170722379 6112159 3544314..3544589 1 NC_010501.1 hypothetical protein 3544589 6112159 PputW619_3208 Pseudomonas putida W619 hypothetical protein YP_001750067.1 3544314 D 390235 CDS YP_001750068.1 170722380 6112160 complement(3544614..3545510) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2464 transcriptional regulator, LysR family; LysR family transcriptional regulator 3545510 6112160 PputW619_3209 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750068.1 3544614 R 390235 CDS YP_001750069.1 170722381 6112161 complement(3545676..3546668) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: kpn:KPN_02028 putative NADPH:quinone reductase and related Zn-dependent oxidoreductases; alcohol dehydrogenase 3546668 6112161 PputW619_3210 Pseudomonas putida W619 alcohol dehydrogenase YP_001750069.1 3545676 R 390235 CDS YP_001750070.1 170722382 6112163 complement(3547329..3548348) 1 NC_010501.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 3548348 6112163 PputW619_3211 Pseudomonas putida W619 putative periplasmic protease YP_001750070.1 3547329 R 390235 CDS YP_001750071.1 170722383 6112164 3548546..3549256 1 NC_010501.1 PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2270 phosphoglycerate mutase family protein; phosphoglycerate mutase 3549256 6112164 PputW619_3212 Pseudomonas putida W619 phosphoglycerate mutase YP_001750071.1 3548546 D 390235 CDS YP_001750072.1 170722384 6112165 3549313..3549630 1 NC_010501.1 PFAM: Sterol-binding domain protein; KEGG: pfo:Pfl_3116 sterol-binding; sterol-binding domain-containing protein 3549630 6112165 PputW619_3213 Pseudomonas putida W619 sterol-binding domain-containing protein YP_001750072.1 3549313 D 390235 CDS YP_001750073.1 170722385 6112166 3549823..3550890 1 NC_010501.1 PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN2268 aminoglycoside aminotranferase; aminoglycoside phosphotransferase 3550890 6112166 PputW619_3214 Pseudomonas putida W619 aminoglycoside phosphotransferase YP_001750073.1 3549823 D 390235 CDS YP_001750074.1 170722386 6112167 3550914..3551681 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2267 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3551681 6112167 PputW619_3215 Pseudomonas putida W619 short chain dehydrogenase YP_001750074.1 3550914 D 390235 CDS YP_001750075.1 170722387 6112168 complement(3551775..3552125) 1 NC_010501.1 KEGG: pen:PSEEN2264 hypothetical protein; hypothetical protein 3552125 6112168 PputW619_3216 Pseudomonas putida W619 hypothetical protein YP_001750075.1 3551775 R 390235 CDS YP_001750076.1 170722388 6112169 3552240..3552542 1 NC_010501.1 KEGG: pfo:Pfl_3509 hypothetical protein; hypothetical protein 3552542 6112169 PputW619_3217 Pseudomonas putida W619 hypothetical protein YP_001750076.1 3552240 D 390235 CDS YP_001750077.1 170722389 6112170 complement(3552544..3553704) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase 3553704 6112170 PputW619_3218 Pseudomonas putida W619 diguanylate cyclase YP_001750077.1 3552544 R 390235 CDS YP_001750078.1 170722390 6112171 3553926..3554108 1 NC_010501.1 KEGG: pen:PSEEN2263 hypothetical protein; hypothetical protein 3554108 6112171 PputW619_3219 Pseudomonas putida W619 hypothetical protein YP_001750078.1 3553926 D 390235 CDS YP_001750079.1 170722391 6112172 3554160..3554546 1 NC_010501.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN2262 hypothetical protein; 17 kDa surface antigen 3554546 6112172 PputW619_3220 Pseudomonas putida W619 17 kDa surface antigen YP_001750079.1 3554160 D 390235 CDS YP_001750080.1 170722392 6112173 3554730..3556559 1 NC_010501.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2261 transporter, sodium:sulfate symporter family; citrate transporter 3556559 6112173 PputW619_3221 Pseudomonas putida W619 citrate transporter YP_001750080.1 3554730 D 390235 CDS YP_001750081.1 170722393 6112174 3556700..3558109 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: pen:PSEEN2260 diguanylate cyclase (GGDEF) domain; diguanylate cyclase 3558109 6112174 PputW619_3222 Pseudomonas putida W619 diguanylate cyclase YP_001750081.1 3556700 D 390235 CDS YP_001750082.1 170722394 6112175 complement(3558111..3558872) 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein; hypothetical protein 3558872 6112175 PputW619_3223 Pseudomonas putida W619 hypothetical protein YP_001750082.1 3558111 R 390235 CDS YP_001750083.1 170722395 6112176 3558972..3559892 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2258 transcriptional regulator, LysR family; LysR family transcriptional regulator 3559892 6112176 PputW619_3224 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750083.1 3558972 D 390235 CDS YP_001750084.1 170722396 6112177 complement(3560009..3560203) 1 NC_010501.1 KEGG: pen:PSEEN2257 hypothetical protein; hypothetical protein 3560203 6112177 PputW619_3225 Pseudomonas putida W619 hypothetical protein YP_001750084.1 3560009 R 390235 CDS YP_001750085.1 170722397 6112178 3560289..3560558 1 NC_010501.1 KEGG: pen:PSEEN2255 hypothetical protein; hypothetical protein 3560558 6112178 PputW619_3226 Pseudomonas putida W619 hypothetical protein YP_001750085.1 3560289 D 390235 CDS YP_001750086.1 170722398 6112179 3561000..3561185 1 NC_010501.1 KEGG: pen:PSEEN2251 hypothetical protein; hypothetical protein 3561185 6112179 PputW619_3227 Pseudomonas putida W619 hypothetical protein YP_001750086.1 3561000 D 390235 CDS YP_001750087.1 170722399 6112180 3561462..3562679 1 NC_010501.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3562679 6112180 PputW619_3228 Pseudomonas putida W619 cytosine deaminase YP_001750087.1 3561462 D 390235 CDS YP_001750088.1 170722400 6112181 complement(3562755..3563168) 1 NC_010501.1 PFAM: Class I peptide chain release factor; KEGG: pen:PSEEN2056 protein chain release factor B; peptidyl-tRNA hydrolase domain-containing protein 3563168 6112181 PputW619_3229 Pseudomonas putida W619 peptidyl-tRNA hydrolase domain-containing protein YP_001750088.1 3562755 R 390235 CDS YP_001750089.1 170722401 6112182 complement(3563506..3565269) 1 NC_010501.1 KEGG: psb:Psyr_2214 PAS; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 3565269 6112182 PputW619_3230 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001750089.1 3563506 R 390235 CDS YP_001750090.1 170722402 6112183 complement(3565595..3566536) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: azo:azo2612 GAF/GGDEF-domain containing protein; GAF sensor-containing diguanylate cyclase 3566536 6112183 PputW619_3231 Pseudomonas putida W619 GAF sensor-containing diguanylate cyclase YP_001750090.1 3565595 R 390235 CDS YP_001750091.1 170722403 6112184 complement(3566533..3567333) 1 NC_010501.1 PFAM: EAL domain protein; KEGG: ajs:Ajs_3442 diguanylate phosphodiesterase; diguanylate phosphodiesterase 3567333 6112184 PputW619_3232 Pseudomonas putida W619 diguanylate phosphodiesterase YP_001750091.1 3566533 R 390235 CDS YP_001750092.1 170722404 6112186 complement(3567955..3568119) 1 NC_010501.1 hypothetical protein 3568119 6112186 PputW619_3234 Pseudomonas putida W619 hypothetical protein YP_001750092.1 3567955 R 390235 CDS YP_001750093.1 170722405 6112187 complement(3568329..3569330) 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_3909 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 3569330 6112187 PputW619_3235 Pseudomonas putida W619 alcohol dehydrogenase YP_001750093.1 3568329 R 390235 CDS YP_001750094.1 170722406 6112188 3569438..3570337 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3910 transcriptional regulator, LysR family; LysR family transcriptional regulator 3570337 6112188 PputW619_3236 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750094.1 3569438 D 390235 CDS YP_001750095.1 170722407 6112189 complement(3570365..3571195) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_3555 transcriptional regulator, AraC family; AraC family transcriptional regulator 3571195 6112189 PputW619_3237 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750095.1 3570365 R 390235 CDS YP_001750096.1 170722408 6112190 3571325..3571843 1 NC_010501.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3556 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3571843 6112190 PputW619_3238 Pseudomonas putida W619 alkylhydroperoxidase YP_001750096.1 3571325 D 390235 CDS YP_001750097.1 170722409 6112191 3571857..3572111 1 NC_010501.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bpd:BURPS668_0480 glutaredoxin 3; glutaredoxin 3 3572111 6112191 PputW619_3239 Pseudomonas putida W619 glutaredoxin 3 YP_001750097.1 3571857 D 390235 CDS YP_001750098.1 170722410 6112193 complement(3573595..3574746) 1 NC_010501.1 PFAM: OmpA/MotB domain protein; ImpA domain protein; KEGG: ses:SARI_02629 hypothetical protein; OmpA/MotB domain-containing protein 3574746 6112193 PputW619_3241 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001750098.1 3573595 R 390235 CDS YP_001750099.1 170722411 6112194 complement(3574758..3575204) 1 NC_010501.1 TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: ypn:YPN_2490 hypothetical protein; type VI secretion system lysozyme-like protein 3575204 6112194 PputW619_3242 Pseudomonas putida W619 type VI secretion system lysozyme-like protein YP_001750099.1 3574758 R 390235 CDS YP_001750100.1 170722412 6112195 complement(3575209..3575745) 1 NC_010501.1 KEGG: ypi:YpsIP31758_2487 hypothetical protein; hypothetical protein 3575745 6112195 PputW619_3243 Pseudomonas putida W619 hypothetical protein YP_001750100.1 3575209 R 390235 CDS YP_001750101.1 170722413 6112196 complement(3575726..3576823) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: plu:plu3224 hypothetical protein; type VI secretion protein 3576823 6112196 PputW619_3244 Pseudomonas putida W619 type VI secretion protein YP_001750101.1 3575726 R 390235 CDS YP_001750102.1 170722414 6112197 complement(3576787..3578556) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: kpn:KPN_03179 hypothetical protein; type VI secretion protein 3578556 6112197 PputW619_3245 Pseudomonas putida W619 type VI secretion protein YP_001750102.1 3576787 R 390235 CDS YP_001750103.1 170722415 6112198 complement(3578580..3580166) 1 NC_010501.1 TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: yps:YPTB1499 hypothetical protein; type VI secretion-associated protein 3580166 6112198 PputW619_3246 Pseudomonas putida W619 type VI secretion-associated protein YP_001750103.1 3578580 R 390235 CDS YP_001750104.1 170722416 6112199 complement(3580163..3583507) 1 NC_010501.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: ypn:YPN_2497 membrane protein; ImcF domain-containing protein 3583507 6112199 PputW619_3247 Pseudomonas putida W619 ImcF domain-containing protein YP_001750104.1 3580163 R 390235 CDS YP_001750105.1 170722417 6112200 complement(3583517..3584749) 1 NC_010501.1 KEGG: ypi:YpsIP31758_0794 hypothetical protein; hypothetical protein 3584749 6112200 PputW619_3248 Pseudomonas putida W619 hypothetical protein YP_001750105.1 3583517 R 390235 CDS YP_001750106.1 170722418 6112201 complement(3584753..3585016) 1 NC_010501.1 PFAM: PAAR repeat-containing protein; KEGG: ses:SARI_02623 hypothetical protein; PAAR repeat-containing protein 3585016 6112201 PputW619_3249 Pseudomonas putida W619 PAAR repeat-containing protein YP_001750106.1 3584753 R 390235 CDS YP_001750107.1 170722419 6112202 complement(3585204..3585848) 1 NC_010501.1 hypothetical protein 3585848 6112202 PputW619_3250 Pseudomonas putida W619 hypothetical protein YP_001750107.1 3585204 R 390235 CDS YP_001750108.1 170722420 6112203 complement(3585832..3588627) 1 NC_010501.1 KEGG: pmy:Pmen_0108 glycoside hydrolase, family 19; hypothetical protein 3588627 6112203 PputW619_3251 Pseudomonas putida W619 hypothetical protein YP_001750108.1 3585832 R 390235 CDS YP_001750109.1 170722421 6112204 complement(3588657..3588917) 1 NC_010501.1 PFAM: PAAR repeat-containing protein; KEGG: ses:SARI_02623 hypothetical protein; PAAR repeat-containing protein 3588917 6112204 PputW619_3252 Pseudomonas putida W619 PAAR repeat-containing protein YP_001750109.1 3588657 R 390235 CDS YP_001750110.1 170722422 6112205 complement(3589399..3592068) 1 NC_010501.1 KEGG: pmy:Pmen_0108 glycoside hydrolase, family 19; hypothetical protein 3592068 6112205 PputW619_3253 Pseudomonas putida W619 hypothetical protein YP_001750110.1 3589399 R 390235 CDS YP_001750111.1 170722423 6112206 complement(3592074..3594437) 1 NC_010501.1 TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: ypi:YpsIP31758_0733 type VI secretion system family protein; ImpA family type VI secretion-associated protein 3594437 6112206 PputW619_3254 Pseudomonas putida W619 ImpA family type VI secretion-associated protein YP_001750111.1 3592074 R 390235 CDS YP_001750112.1 170722424 6112207 complement(3594440..3597094) 1 NC_010501.1 KEGG: ypi:YpsIP31758_2505 ATPase, AAA family; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase 3597094 6112207 PputW619_3255 Pseudomonas putida W619 type VI secretion ATPase YP_001750112.1 3594440 R 390235 CDS YP_001750113.1 170722425 6112208 complement(3597244..3597747) 1 NC_010501.1 TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: ypi:YpsIP31758_2506 hypothetical protein; Hcp1 family type VI secretion system effector 3597747 6112208 PputW619_3256 Pseudomonas putida W619 Hcp1 family type VI secretion system effector YP_001750113.1 3597244 R 390235 CDS YP_001750114.1 170722426 6112209 complement(3597764..3599494) 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: plu:plu3255 hypothetical protein; OmpA/MotB domain-containing protein 3599494 6112209 PputW619_3257 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001750114.1 3597764 R 390235 CDS YP_001750115.1 170722427 6112210 complement(3599500..3600168) 1 NC_010501.1 KEGG: ecc:c3388 hypothetical protein; hypothetical protein 3600168 6112210 PputW619_3258 Pseudomonas putida W619 hypothetical protein YP_001750115.1 3599500 R 390235 CDS YP_001750116.1 170722428 6112211 complement(3600177..3601532) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: plu:plu4226 hypothetical protein; type VI secretion protein 3601532 6112211 PputW619_3259 Pseudomonas putida W619 type VI secretion protein YP_001750116.1 3600177 R 390235 CDS YP_001750117.1 170722429 6112212 complement(3601556..3603094) 1 NC_010501.1 TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: ypi:YpsIP31758_2510 hypothetical protein; EvpB family type VI secretion protein 3603094 6112212 PputW619_3260 Pseudomonas putida W619 EvpB family type VI secretion protein YP_001750117.1 3601556 R 390235 CDS YP_001750118.1 170722430 6112213 complement(3603129..3603632) 1 NC_010501.1 TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: ypp:YPDSF_1511 hypothetical protein; type VI secretion protein 3603632 6112213 PputW619_3261 Pseudomonas putida W619 type VI secretion protein YP_001750118.1 3603129 R 390235 CDS YP_001750119.1 170722431 6112214 3604429..3604800 1 NC_010501.1 PFAM: IstB domain protein ATP-binding protein; KEGG: pst:PSPTO_2842 ISPsy14, transposition helper protein; IstB ATP binding domain-containing protein 3604800 6112214 PputW619_3262 Pseudomonas putida W619 IstB ATP binding domain-containing protein YP_001750119.1 3604429 D 390235 CDS YP_001750120.1 170722432 6112216 complement(3606401..3606670) 1 NC_010501.1 KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 3606670 6112216 PputW619_3265 Pseudomonas putida W619 hypothetical protein YP_001750120.1 3606401 R 390235 CDS YP_001750121.1 170722433 6112218 complement(3607364..3607513) 1 NC_010501.1 hypothetical protein 3607513 6112218 PputW619_3267 Pseudomonas putida W619 hypothetical protein YP_001750121.1 3607364 R 390235 CDS YP_001750122.1 170722434 6112219 complement(3607817..3609046) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_3647 probable MFS transporter; major facilitator transporter 3609046 6112219 PputW619_3268 Pseudomonas putida W619 major facilitator transporter YP_001750122.1 3607817 R 390235 CDS YP_001750123.1 170722435 6112220 complement(3609128..3610339) 1 NC_010501.1 PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; peptidase M24 3610339 6112220 PputW619_3269 Pseudomonas putida W619 peptidase M24 YP_001750123.1 3609128 R 390235 CDS YP_001750124.1 170722436 6112221 complement(3610656..3611048) 1 NC_010501.1 KEGG: bpl:BURPS1106A_A1931 transcriptional regulator, AraC family; hypothetical protein 3611048 6112221 PputW619_3270 Pseudomonas putida W619 hypothetical protein YP_001750124.1 3610656 R 390235 CDS YP_001750125.1 170722437 6112222 complement(3611135..3612223) 1 NC_010501.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dsh:Dshi_2120 ABC transporter related; ABC transporter-like protein 3612223 6112222 PputW619_3271 Pseudomonas putida W619 ABC transporter-like protein YP_001750125.1 3611135 R 390235 CDS YP_001750126.1 170722438 6112223 complement(3612252..3613061) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_2121 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3613061 6112223 PputW619_3272 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750126.1 3612252 R 390235 CDS YP_001750127.1 170722439 6112224 complement(3613058..3613975) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1022 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3613975 6112224 PputW619_3273 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750127.1 3613058 R 390235 CDS YP_001750128.1 170722440 6112225 complement(3614000..3615127) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_1021 spermidine/putrescine ABC transporter, periplasmic binding protein, putative; extracellular solute-binding protein 3615127 6112225 PputW619_3274 Pseudomonas putida W619 extracellular solute-binding protein YP_001750128.1 3614000 R 390235 CDS YP_001750129.1 170722441 6112226 3615443..3616225 1 NC_010501.1 PFAM: Creatininase; KEGG: pde:Pden_1019 creatininase; creatininase 3616225 6112226 PputW619_3275 Pseudomonas putida W619 creatininase YP_001750129.1 3615443 D 390235 CDS YP_001750130.1 170722442 6112227 3616299..3617684 1 NC_010501.1 TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pae:PA0129 gamma-aminobutyrate permease; GABA permease 3617684 6112227 PputW619_3276 Pseudomonas putida W619 GABA permease YP_001750130.1 3616299 D 390235 CDS YP_001750131.1 170722443 6112228 3617882..3618901 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: csa:Csal_0987 transcriptional regulator, AraC family; AraC family transcriptional regulator 3618901 6112228 PputW619_3277 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750131.1 3617882 D 390235 CDS YP_001750132.1 170722444 6112229 complement(3619154..3620371) 1 NC_010501.1 KEGG: bmn:BMA10247_A1832 putative purine catabolism transcriptional regulator; PucR family transcriptional regulator 3620371 6112229 PputW619_3278 Pseudomonas putida W619 PucR family transcriptional regulator YP_001750132.1 3619154 R 390235 CDS YP_001750133.1 170722445 6112230 complement(3620790..3621179) 1 NC_010501.1 KEGG: pst:PSPTO_1571 hypothetical protein; hypothetical protein 3621179 6112230 PputW619_3279 Pseudomonas putida W619 hypothetical protein YP_001750133.1 3620790 R 390235 CDS YP_001750134.1 170722446 6112231 complement(3621294..3622151) 1 NC_010501.1 PFAM: chemotaxis sensory transducer; KEGG: pfo:Pfl_0378 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3622151 6112231 PputW619_3280 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001750134.1 3621294 R 390235 CDS YP_001750135.1 170722447 6112232 complement(3622715..3624970) 1 NC_010501.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bbr:BB3874 high-affinity choline transport protein; choline/carnitine/betaine transporter 3624970 6112232 PputW619_3281 Pseudomonas putida W619 choline/carnitine/betaine transporter YP_001750135.1 3622715 R 390235 CDS YP_001750136.1 170722448 6112233 complement(3625445..3626407) 1 NC_010501.1 KEGG: pol:Bpro_3874 putative hemagglutinin-related protein; 3-carboxymuconate cyclase-like protein 3626407 6112233 PputW619_3282 Pseudomonas putida W619 3-carboxymuconate cyclase-like protein YP_001750136.1 3625445 R 390235 CDS YP_001750137.1 170722449 6112234 complement(3626587..3626883) 1 NC_010501.1 KEGG: pen:PSEEN4363 porin, OprD family; hypothetical protein 3626883 6112234 PputW619_3283 Pseudomonas putida W619 hypothetical protein YP_001750137.1 3626587 R 390235 CDS YP_001750138.1 170722450 6112235 3627474..3628211 1 NC_010501.1 KEGG: pfo:Pfl_2992 hypothetical protein; hypothetical protein 3628211 6112235 PputW619_3284 Pseudomonas putida W619 hypothetical protein YP_001750138.1 3627474 D 390235 CDS YP_001750139.1 170722451 6112236 3628325..3628540 1 NC_010501.1 PFAM: Prophage CP4-57 regulatory; KEGG: pfo:Pfl_2993 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 3628540 6112236 PputW619_3285 Pseudomonas putida W619 phage transcriptional regulator AlpA YP_001750139.1 3628325 D 390235 CDS YP_001750140.1 170722452 6112237 3628543..3629433 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pfo:Pfl_2994 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 3629433 6112237 PputW619_3286 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001750140.1 3628543 D 390235 CDS YP_001750141.1 170722453 6112238 3629437..3630936 1 NC_010501.1 KEGG: pfo:Pfl_2995 hypothetical protein; hypothetical protein 3630936 6112238 PputW619_3287 Pseudomonas putida W619 hypothetical protein YP_001750141.1 3629437 D 390235 CDS YP_001750142.1 170722454 6112239 3630953..3631504 1 NC_010501.1 KEGG: pfo:Pfl_2996 hypothetical protein; hypothetical protein 3631504 6112239 PputW619_3288 Pseudomonas putida W619 hypothetical protein YP_001750142.1 3630953 D 390235 CDS YP_001750143.1 170722455 6112240 3631498..3632715 1 NC_010501.1 KEGG: pfo:Pfl_2997 hypothetical protein; hypothetical protein 3632715 6112240 PputW619_3289 Pseudomonas putida W619 hypothetical protein YP_001750143.1 3631498 D 390235 CDS YP_001750144.1 170722456 6112241 3632867..3633622 1 NC_010501.1 PFAM: Domain of unknown function DUF1845; KEGG: pfo:Pfl_2998 hypothetical protein; hypothetical protein 3633622 6112241 PputW619_3290 Pseudomonas putida W619 hypothetical protein YP_001750144.1 3632867 D 390235 CDS YP_001750145.1 170722457 6112242 3633619..3634113 1 NC_010501.1 KEGG: pfo:Pfl_2999 hypothetical protein; hypothetical protein 3634113 6112242 PputW619_3291 Pseudomonas putida W619 hypothetical protein YP_001750145.1 3633619 D 390235 CDS YP_001750146.1 170722458 6112243 3634119..3634547 1 NC_010501.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3634547 6112243 PputW619_3292 Pseudomonas putida W619 single-stranded DNA-binding protein YP_001750146.1 3634119 D 390235 CDS YP_001750147.1 170722459 6112244 complement(3634642..3634869) 1 NC_010501.1 hypothetical protein 3634869 6112244 PputW619_3293 Pseudomonas putida W619 hypothetical protein YP_001750147.1 3634642 R 390235 CDS YP_001750148.1 170722460 6112245 3635010..3635354 1 NC_010501.1 PFAM: helix-turn-helix domain protein; KEGG: cvi:CV_1213 hypothetical protein; XRE family transcriptional regulator 3635354 6112245 PputW619_3294 Pseudomonas putida W619 XRE family transcriptional regulator YP_001750148.1 3635010 D 390235 CDS YP_001750149.1 170722461 6112246 3635452..3637419 1 NC_010501.1 KEGG: pfo:Pfl_3001 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 3637419 6112246 PputW619_3295 Pseudomonas putida W619 DNA topoisomerase III YP_001750149.1 3635452 D 390235 CDS YP_001750150.1 170722462 6112247 3638161..3638691 1 NC_010501.1 KEGG: pfo:Pfl_3003 hypothetical protein; hypothetical protein 3638691 6112247 PputW619_3296 Pseudomonas putida W619 hypothetical protein YP_001750150.1 3638161 D 390235 CDS YP_001750151.1 170722463 6112248 3638759..3639016 1 NC_010501.1 KEGG: pfo:Pfl_3004 hypothetical protein; hypothetical protein 3639016 6112248 PputW619_3297 Pseudomonas putida W619 hypothetical protein YP_001750151.1 3638759 D 390235 CDS YP_001750152.1 170722464 6112249 3639084..3639578 1 NC_010501.1 PFAM: DNA repair protein RadC; KEGG: pfo:Pfl_3005 DNA repair protein RadC; DNA repair protein RadC 3639578 6112249 PputW619_3298 Pseudomonas putida W619 DNA repair protein RadC YP_001750152.1 3639084 D 390235 CDS YP_001750153.1 170722465 6112250 3639644..3640360 1 NC_010501.1 KEGG: pfo:Pfl_3006 hypothetical protein; hypothetical protein 3640360 6112250 PputW619_3299 Pseudomonas putida W619 hypothetical protein YP_001750153.1 3639644 D 390235 CDS YP_001750154.1 170722466 6112251 3640491..3641006 1 NC_010501.1 KEGG: spe:Spro_0320 type IV B pilus protein; type IV B pilus protein 3641006 6112251 PputW619_3300 Pseudomonas putida W619 type IV B pilus protein YP_001750154.1 3640491 D 390235 CDS YP_001750155.1 170722467 6112252 3641003..3641674 1 NC_010501.1 KEGG: pfo:Pfl_3008 hypothetical protein; hypothetical protein 3641674 6112252 PputW619_3301 Pseudomonas putida W619 hypothetical protein YP_001750155.1 3641003 D 390235 CDS YP_001750156.1 170722468 6112253 3641685..3642404 1 NC_010501.1 KEGG: pfo:Pfl_3009 hypothetical protein; hypothetical protein 3642404 6112253 PputW619_3302 Pseudomonas putida W619 hypothetical protein YP_001750156.1 3641685 D 390235 CDS YP_001750157.1 170722469 6112254 3642386..3642940 1 NC_010501.1 PFAM: Lytic transglycosylase catalytic; KEGG: pfo:Pfl_3010 lytic transglycosylase, catalytic; lytic transglycosylase 3642940 6112254 PputW619_3303 Pseudomonas putida W619 lytic transglycosylase YP_001750157.1 3642386 D 390235 CDS YP_001750158.1 170722470 6112255 3642937..3643356 1 NC_010501.1 KEGG: pfo:Pfl_3011 hypothetical protein; hypothetical protein 3643356 6112255 PputW619_3304 Pseudomonas putida W619 hypothetical protein YP_001750158.1 3642937 D 390235 CDS YP_001750159.1 170722471 6112256 3643366..3645489 1 NC_010501.1 KEGG: pfo:Pfl_3012 hypothetical protein; hypothetical protein 3645489 6112256 PputW619_3305 Pseudomonas putida W619 hypothetical protein YP_001750159.1 3643366 D 390235 CDS YP_001750160.1 170722472 6112257 3645588..3646256 1 NC_010501.1 KEGG: pfo:Pfl_3013 hypothetical protein; hypothetical protein 3646256 6112257 PputW619_3306 Pseudomonas putida W619 hypothetical protein YP_001750160.1 3645588 D 390235 CDS YP_001750161.1 170722473 6112258 complement(3646633..3647175) 1 NC_010501.1 PFAM: cytochrome B561; KEGG: pfo:Pfl_3348 cytochrome b561; cytochrome B561 3647175 6112258 PputW619_3307 Pseudomonas putida W619 cytochrome B561 YP_001750161.1 3646633 R 390235 CDS YP_001750162.1 170722474 6112259 complement(3647343..3648707) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2758 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3648707 6112259 PputW619_3308 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001750162.1 3647343 R 390235 CDS YP_001750163.1 170722475 6112260 complement(3648704..3649366) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2757 DNA-binding response regulator; two component transcriptional regulator 3649366 6112260 PputW619_3309 Pseudomonas putida W619 two component transcriptional regulator YP_001750163.1 3648704 R 390235 CDS YP_001750164.1 170722476 6112261 complement(3649369..3650010) 1 NC_010501.1 KEGG: pen:PSEEN2756 hypothetical protein; hypothetical protein 3650010 6112261 PputW619_3310 Pseudomonas putida W619 hypothetical protein YP_001750164.1 3649369 R 390235 CDS YP_001750165.1 170722477 6112262 complement(3650007..3650813) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2755 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3650813 6112262 PputW619_3311 Pseudomonas putida W619 short chain dehydrogenase YP_001750165.1 3650007 R 390235 CDS YP_001750166.1 170722478 6112263 complement(3650800..3651480) 1 NC_010501.1 PFAM: Haem oxygenase; KEGG: pen:PSEEN2754 hypothetical protein; heme oxygenase 3651480 6112263 PputW619_3312 Pseudomonas putida W619 heme oxygenase YP_001750166.1 3650800 R 390235 CDS YP_001750167.1 170722479 6112264 complement(3651489..3652952) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN2753 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 3652952 6112264 PputW619_3313 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001750167.1 3651489 R 390235 CDS YP_001750168.1 170722480 6112265 complement(3652942..3653619) 1 NC_010501.1 KEGG: pen:PSEEN2752 hypothetical protein; hypothetical protein 3653619 6112265 PputW619_3314 Pseudomonas putida W619 hypothetical protein YP_001750168.1 3652942 R 390235 CDS YP_001750169.1 170722481 6112266 complement(3654060..3655307) 1 NC_010501.1 PFAM: transposase mutator type; KEGG: psp:PSPPH_4836 ISPsy18, transposase; transposase mutator type 3655307 6112266 PputW619_3315 Pseudomonas putida W619 transposase mutator type YP_001750169.1 3654060 R 390235 CDS YP_001750170.1 170722482 6112267 complement(3655440..3656204) 1 NC_010501.1 hypothetical protein 3656204 6112267 PputW619_3316 Pseudomonas putida W619 hypothetical protein YP_001750170.1 3655440 R 390235 CDS YP_001750171.1 170722483 6112268 3656475..3657911 1 NC_010501.1 PFAM: transposase IS4 family protein; KEGG: psa:PST_0668 ISPsy6, transposase; transposase IS4 family protein 3657911 6112268 PputW619_3317 Pseudomonas putida W619 transposase IS4 family protein YP_001750171.1 3656475 D 390235 CDS YP_001750172.1 170722484 6112269 complement(3658267..3659304) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azc:AZC_3049 transcriptional regulator; AraC family transcriptional regulator 3659304 6112269 PputW619_3318 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750172.1 3658267 R 390235 CDS YP_001750173.1 170722485 6112270 3659346..3661019 1 NC_010501.1 PFAM: serine dehydratase alpha chain; KEGG: rba:RB8979 probable L-serine dehydratase, alpha chain; L-serine ammonia-lyase 3661019 6112270 PputW619_3319 Pseudomonas putida W619 L-serine ammonia-lyase YP_001750173.1 3659346 D 390235 CDS YP_001750174.1 170722486 6112271 3661023..3662033 1 NC_010501.1 PFAM: proline racemase; KEGG: bmu:Bmul_5268 proline racemase; proline racemase 3662033 6112271 PputW619_3320 Pseudomonas putida W619 proline racemase YP_001750174.1 3661023 D 390235 CDS YP_001750175.1 170722487 6112272 3662167..3663486 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sen:SACE_4846 putative benzoate transport protein (MFS family); major facilitator transporter 3663486 6112272 PputW619_3321 Pseudomonas putida W619 major facilitator transporter YP_001750175.1 3662167 D 390235 CDS YP_001750176.1 170722488 6112273 3663871..3664206 1 NC_010501.1 PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: pfo:Pfl_3015 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein 3664206 6112273 PputW619_3322 Pseudomonas putida W619 hypothetical protein YP_001750176.1 3663871 D 390235 CDS YP_001750177.1 170722489 6112274 3664193..3664432 1 NC_010501.1 KEGG: pfo:Pfl_3016 hypothetical protein; hypothetical protein 3664432 6112274 PputW619_3323 Pseudomonas putida W619 hypothetical protein YP_001750177.1 3664193 D 390235 CDS YP_001750178.1 170722490 6112275 3664448..3664825 1 NC_010501.1 KEGG: pfo:Pfl_3017 hypothetical protein; hypothetical protein 3664825 6112275 PputW619_3324 Pseudomonas putida W619 hypothetical protein YP_001750178.1 3664448 D 390235 CDS YP_001750179.1 170722491 6112276 3664833..3665234 1 NC_010501.1 KEGG: pfo:Pfl_3018 hypothetical protein; hypothetical protein 3665234 6112276 PputW619_3325 Pseudomonas putida W619 hypothetical protein YP_001750179.1 3664833 D 390235 CDS YP_001750180.1 170722492 6112277 3665231..3665872 1 NC_010501.1 KEGG: pfo:Pfl_3019 hypothetical protein; hypothetical protein 3665872 6112277 PputW619_3326 Pseudomonas putida W619 hypothetical protein YP_001750180.1 3665231 D 390235 CDS YP_001750181.1 170722493 6112278 3665869..3666675 1 NC_010501.1 KEGG: pfo:Pfl_3020 hypothetical protein; hypothetical protein 3666675 6112278 PputW619_3327 Pseudomonas putida W619 hypothetical protein YP_001750181.1 3665869 D 390235 CDS YP_001750182.1 170722494 6112279 3666665..3668173 1 NC_010501.1 KEGG: pfo:Pfl_3021 hypothetical protein; hypothetical protein 3668173 6112279 PputW619_3328 Pseudomonas putida W619 hypothetical protein YP_001750182.1 3666665 D 390235 CDS YP_001750183.1 170722495 6112280 3668136..3668555 1 NC_010501.1 KEGG: pfo:Pfl_3022 hypothetical protein; hypothetical protein 3668555 6112280 PputW619_3329 Pseudomonas putida W619 hypothetical protein YP_001750183.1 3668136 D 390235 CDS YP_001750184.1 170722496 6112281 3668555..3671296 1 NC_010501.1 KEGG: pfo:Pfl_3023 hypothetical protein; hypothetical protein 3671296 6112281 PputW619_3330 Pseudomonas putida W619 hypothetical protein YP_001750184.1 3668555 D 390235 CDS YP_001750185.1 170722497 6112282 3671517..3672494 1 NC_010501.1 PFAM: protein of unknown function DUF1527; KEGG: pfo:Pfl_3026 protein of unknown function DUF1527; hypothetical protein 3672494 6112282 PputW619_3331 Pseudomonas putida W619 hypothetical protein YP_001750185.1 3671517 D 390235 CDS YP_001750186.1 170722498 6112283 3672494..3673849 1 NC_010501.1 KEGG: pfo:Pfl_3027 hypothetical protein; hypothetical protein 3673849 6112283 PputW619_3332 Pseudomonas putida W619 hypothetical protein YP_001750186.1 3672494 D 390235 CDS YP_001750187.1 170722499 6112284 3673846..3674151 1 NC_010501.1 KEGG: pfo:Pfl_3028 hypothetical protein; hypothetical protein 3674151 6112284 PputW619_3333 Pseudomonas putida W619 hypothetical protein YP_001750187.1 3673846 D 390235 CDS YP_001750188.1 170722500 6112285 3674161..3675699 1 NC_010501.1 KEGG: pfo:Pfl_3029 hypothetical protein; hypothetical protein 3675699 6112285 PputW619_3334 Pseudomonas putida W619 hypothetical protein YP_001750188.1 3674161 D 390235 CDS YP_001750189.1 170722501 6112286 3676517..3676882 1 NC_010501.1 KEGG: ajs:Ajs_2227 hypothetical protein; hypothetical protein 3676882 6112286 PputW619_3335 Pseudomonas putida W619 hypothetical protein YP_001750189.1 3676517 D 390235 CDS YP_001750190.1 170722502 6112287 3677557..3678495 1 NC_010501.1 PFAM: domain of unknown function DUF1738; KEGG: pfo:Pfl_3033 probable DNA primase; hypothetical protein 3678495 6112287 PputW619_3336 Pseudomonas putida W619 hypothetical protein YP_001750190.1 3677557 D 390235 CDS YP_001750191.1 170722503 6112288 complement(3678582..3678947) 1 NC_010501.1 KEGG: pfl:PFL_4981 transcriptional regulator, putative; transcriptional regulator 3678947 6112288 PputW619_3337 Pseudomonas putida W619 transcriptional regulator YP_001750191.1 3678582 R 390235 CDS YP_001750192.1 170722504 6112289 complement(3679074..3679268) 1 NC_010501.1 hypothetical protein 3679268 6112289 PputW619_3338 Pseudomonas putida W619 hypothetical protein YP_001750192.1 3679074 R 390235 CDS YP_001750193.1 170722505 6112290 3679488..3681197 1 NC_010501.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: pfo:Pfl_3034 hypothetical protein; relaxase 3681197 6112290 PputW619_3339 Pseudomonas putida W619 relaxase YP_001750193.1 3679488 D 390235 CDS YP_001750194.1 170722506 6112291 complement(3681390..3682103) 1 NC_010501.1 KEGG: mbu:Mbur_1752 hypothetical protein; hypothetical protein 3682103 6112291 PputW619_3340 Pseudomonas putida W619 hypothetical protein YP_001750194.1 3681390 R 390235 CDS YP_001750195.1 170722507 6112292 complement(3682477..3683790) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pmy:Pmen_4306 outer membrane porin; outer membrane porin 3683790 6112292 PputW619_3341 Pseudomonas putida W619 outer membrane porin YP_001750195.1 3682477 R 390235 CDS YP_001750196.1 170722508 6112293 complement(3684142..3684924) 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3684924 6112293 PputW619_3342 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001750196.1 3684142 R 390235 CDS YP_001750197.1 170722509 6112294 complement(3684956..3685747) 1 NC_010501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo1927 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3685747 6112294 PputW619_3343 Pseudomonas putida W619 enoyl-CoA hydratase/isomerase YP_001750197.1 3684956 R 390235 CDS YP_001750198.1 170722510 6112295 complement(3685744..3686925) 1 NC_010501.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rrs:RoseRS_2545 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 3686925 6112295 PputW619_3344 Pseudomonas putida W619 acetyl-CoA acetyltransferase YP_001750198.1 3685744 R 390235 CDS YP_001750199.1 170722511 6112296 complement(3686954..3688627) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_2557 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3688627 6112296 PputW619_3345 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001750199.1 3686954 R 390235 CDS YP_001750200.1 170722512 6112297 complement(3688642..3689700) 1 NC_010501.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2692 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3689700 6112297 PputW619_3346 Pseudomonas putida W619 L-carnitine dehydratase/bile acid-inducible protein F YP_001750200.1 3688642 R 390235 CDS YP_001750201.1 170722513 6112298 complement(3689697..3690842) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B0699 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase domain-containing protein 3690842 6112298 PputW619_3347 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001750201.1 3689697 R 390235 CDS YP_001750202.1 170722514 6112299 complement(3690878..3692047) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_3969 transcriptional regulator, AraC family; AraC family transcriptional regulator 3692047 6112299 PputW619_3348 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750202.1 3690878 R 390235 CDS YP_001750203.1 170722515 6112300 3692315..3692656 1 NC_010501.1 KEGG: pfo:Pfl_2753 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3692656 6112300 PputW619_3349 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001750203.1 3692315 D 390235 CDS YP_001750204.1 170722516 6112301 3692653..3692865 1 NC_010501.1 KEGG: reh:H16_A1267 short chain dehydrogenase; short chain dehydrogenase 3692865 6112301 PputW619_3350 Pseudomonas putida W619 short chain dehydrogenase YP_001750204.1 3692653 D 390235 CDS YP_001750205.1 170722517 6112302 complement(3693177..3694205) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C6814 transcriptional regulator, AraC family; AraC family transcriptional regulator 3694205 6112302 PputW619_3351 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750205.1 3693177 R 390235 CDS YP_001750206.1 170722518 6112303 3694705..3695406 1 NC_010501.1 PFAM: nitroreductase; KEGG: rme:Rmet_1203 nitroreductase; nitroreductase 3695406 6112303 PputW619_3352 Pseudomonas putida W619 nitroreductase YP_001750206.1 3694705 D 390235 CDS YP_001750207.1 170722519 6112304 3695552..3697336 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cvi:CV_3816 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3697336 6112304 PputW619_3353 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001750207.1 3695552 D 390235 CDS YP_001750208.1 170722520 6112305 3697402..3698382 1 NC_010501.1 PFAM: transposase IS4 family protein; KEGG: bpt:Bpet4179 ISPssy, transposase; transposase IS4 family protein 3698382 6112305 PputW619_3354 Pseudomonas putida W619 transposase IS4 family protein YP_001750208.1 3697402 D 390235 CDS YP_001750209.1 170722521 6112307 complement(3699826..3700296) 1 NC_010501.1 KEGG: pau:PA14_59190 hypothetical protein; hypothetical protein 3700296 6112307 PputW619_3356 Pseudomonas putida W619 hypothetical protein YP_001750209.1 3699826 R 390235 CDS YP_001750210.1 170722522 6112308 complement(3700507..3701361) 1 NC_010501.1 KEGG: tde:TDE1618 hypothetical protein; hypothetical protein 3701361 6112308 PputW619_3357 Pseudomonas putida W619 hypothetical protein YP_001750210.1 3700507 R 390235 CDS YP_001750211.1 170722523 6112309 complement(3701410..3701949) 1 NC_010501.1 KEGG: rsq:Rsph17025_4363 hypothetical protein; hypothetical protein 3701949 6112309 PputW619_3358 Pseudomonas putida W619 hypothetical protein YP_001750211.1 3701410 R 390235 CDS YP_001750212.1 170722524 6112310 complement(3702025..3702576) 1 NC_010501.1 KEGG: sdn:Sden_3576 hypothetical protein; hypothetical protein 3702576 6112310 PputW619_3359 Pseudomonas putida W619 hypothetical protein YP_001750212.1 3702025 R 390235 CDS YP_001750213.1 170722525 6112311 complement(3702612..3703088) 1 NC_010501.1 PFAM: Domain of unknown function DUF1863; KEGG: shm:Shewmr7_1038 hypothetical protein; hypothetical protein 3703088 6112311 PputW619_3360 Pseudomonas putida W619 hypothetical protein YP_001750213.1 3702612 R 390235 CDS YP_001750214.1 170722526 6112312 complement(3703093..3704541) 1 NC_010501.1 KEGG: mms:mma_2731 hypothetical protein; hypothetical protein 3704541 6112312 PputW619_3361 Pseudomonas putida W619 hypothetical protein YP_001750214.1 3703093 R 390235 CDS YP_001750215.1 170722527 6112313 complement(3705086..3707083) 1 NC_010501.1 KEGG: plu:plu4326 hypothetical protein; hypothetical protein 3707083 6112313 PputW619_3362 Pseudomonas putida W619 hypothetical protein YP_001750215.1 3705086 R 390235 CDS YP_001750216.1 170722528 6112314 complement(3707067..3707573) 1 NC_010501.1 KEGG: plu:plu4327 hypothetical protein; hypothetical protein 3707573 6112314 PputW619_3363 Pseudomonas putida W619 hypothetical protein YP_001750216.1 3707067 R 390235 CDS YP_001750217.1 170722529 6112315 complement(3707570..3708775) 1 NC_010501.1 KEGG: plu:plu4328 hypothetical protein; hypothetical protein 3708775 6112315 PputW619_3364 Pseudomonas putida W619 hypothetical protein YP_001750217.1 3707570 R 390235 CDS YP_001750218.1 170722530 6112316 3708936..3709691 1 NC_010501.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pst:PSPTO_4520 methyltransferase domain protein; hypothetical protein 3709691 6112316 PputW619_3365 Pseudomonas putida W619 hypothetical protein YP_001750218.1 3708936 D 390235 CDS YP_001750219.1 170722531 6112317 3709688..3710089 1 NC_010501.1 KEGG: pst:PSPTO_4520 methyltransferase domain protein; methyltransferase domain-containing protein 3710089 6112317 PputW619_3366 Pseudomonas putida W619 methyltransferase domain-containing protein YP_001750219.1 3709688 D 390235 CDS YP_001750220.1 170722532 6112318 3710230..3710394 1 NC_010501.1 KEGG: pst:PSPTO_4522 hypothetical protein; hypothetical protein 3710394 6112318 PputW619_3367 Pseudomonas putida W619 hypothetical protein YP_001750220.1 3710230 D 390235 CDS YP_001750221.1 170722533 6112319 3710548..3710760 1 NC_010501.1 hypothetical protein 3710760 6112319 PputW619_3368 Pseudomonas putida W619 hypothetical protein YP_001750221.1 3710548 D 390235 CDS YP_001750222.1 170722534 6112320 3711082..3711879 1 NC_010501.1 PFAM: Gp37Gp68 family protein; KEGG: sme:SMa2239 hypothetical protein; Gp37Gp68 family protein 3711879 6112320 PputW619_3369 Pseudomonas putida W619 Gp37Gp68 family protein YP_001750222.1 3711082 D 390235 CDS YP_001750223.1 170722535 6112321 3711898..3713127 1 NC_010501.1 KEGG: rpb:RPB_2716 hypothetical protein; hypothetical protein 3713127 6112321 PputW619_3370 Pseudomonas putida W619 hypothetical protein YP_001750223.1 3711898 D 390235 CDS YP_001750224.1 170722536 6112322 complement(3713446..3713763) 1 NC_010501.1 KEGG: par:Psyc_0869 possible AAA ATPase family protein; hypothetical protein 3713763 6112322 PputW619_3371 Pseudomonas putida W619 hypothetical protein YP_001750224.1 3713446 R 390235 CDS YP_001750225.1 170722537 6112323 complement(3713885..3715690) 1 NC_010501.1 PFAM: integrase family protein; KEGG: net:Neut_0006 phage integrase family protein; integrase family protein 3715690 6112323 PputW619_3372 Pseudomonas putida W619 integrase family protein YP_001750225.1 3713885 R 390235 CDS YP_001750226.1 170722538 6112325 complement(3716050..3716610) 1 NC_010501.1 KEGG: pen:PSEEN3448 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3716610 6112325 PputW619_3373 Pseudomonas putida W619 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001750226.1 3716050 R 390235 CDS YP_001750227.1 170722539 6112326 complement(3716644..3718467) 1 NC_010501.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3718467 uvrC 6112326 uvrC Pseudomonas putida W619 excinuclease ABC subunit C YP_001750227.1 3716644 R 390235 CDS YP_001750228.1 170722540 6112327 complement(3718473..3719111) 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3450 response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family); two component LuxR family transcriptional regulator 3719111 6112327 PputW619_3375 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001750228.1 3718473 R 390235 CDS YP_001750229.1 170722541 6112328 complement(3719175..3719564) 1 NC_010501.1 SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN3451 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 3719564 6112328 PputW619_3376 Pseudomonas putida W619 XRE family transcriptional regulator YP_001750229.1 3719175 R 390235 CDS YP_001750230.1 170722542 6112329 complement(3719718..3720149) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3720149 6112329 PputW619_3377 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001750230.1 3719718 R 390235 CDS YP_001750231.1 170722543 6112330 complement(3720284..3720979) 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN3467 glutathione S-transferase; glutathione S-transferase domain-containing protein 3720979 6112330 PputW619_3378 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001750231.1 3720284 R 390235 CDS YP_001750232.1 170722544 6112331 complement(3721053..3721553) 1 NC_010501.1 KEGG: pen:PSEEN3472 hypothetical protein; hypothetical protein 3721553 6112331 PputW619_3379 Pseudomonas putida W619 hypothetical protein YP_001750232.1 3721053 R 390235 CDS YP_001750233.1 170722545 6112332 complement(3721660..3723042) 1 NC_010501.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN3473 gamma-aminobutyrate permease; amino acid permease-associated protein 3723042 6112332 PputW619_3380 Pseudomonas putida W619 amino acid permease-associated protein YP_001750233.1 3721660 R 390235 CDS YP_001750234.1 170722546 6112333 3723298..3724194 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3474 transcriptional regulator, LysR family; LysR family transcriptional regulator 3724194 6112333 PputW619_3381 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750234.1 3723298 D 390235 CDS YP_001750235.1 170722547 6112334 3724300..3725544 1 NC_010501.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN3475 4-aminobutyrate aminotransferase, PLP-dependent; class III aminotransferase 3725544 6112334 PputW619_3382 Pseudomonas putida W619 class III aminotransferase YP_001750235.1 3724300 D 390235 CDS YP_001750236.1 170722548 6112335 complement(3725548..3725850) 1 NC_010501.1 KEGG: pen:PSEEN3476 hypothetical protein; hypothetical protein 3725850 6112335 PputW619_3383 Pseudomonas putida W619 hypothetical protein YP_001750236.1 3725548 R 390235 CDS YP_001750237.1 170722549 6112336 3725990..3726415 1 NC_010501.1 KEGG: pen:PSEEN3477 hypothetical protein; hypothetical protein 3726415 6112336 PputW619_3384 Pseudomonas putida W619 hypothetical protein YP_001750237.1 3725990 D 390235 CDS YP_001750238.1 170722550 6112337 3726489..3728600 1 NC_010501.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3728600 6112337 PputW619_3385 Pseudomonas putida W619 elongation factor G YP_001750238.1 3726489 D 390235 CDS YP_001750239.1 170722551 6112338 complement(3728651..3730093) 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN3479 probable sulfate transproter, MFS family; sulfate transporter 3730093 6112338 PputW619_3386 Pseudomonas putida W619 sulfate transporter YP_001750239.1 3728651 R 390235 CDS YP_001750240.1 170722552 6112339 complement(3730196..3731350) 1 NC_010501.1 KEGG: pfo:Pfl_5228 hypothetical protein; hypothetical protein 3731350 6112339 PputW619_3387 Pseudomonas putida W619 hypothetical protein YP_001750240.1 3730196 R 390235 CDS YP_001750241.1 170722553 6112340 3731492..3732226 1 NC_010501.1 PFAM: NolW domain protein; KEGG: pen:PSEEN3480 type II secretion system protein D; signal peptide; NolW domain-containing protein 3732226 6112340 PputW619_3388 Pseudomonas putida W619 NolW domain-containing protein YP_001750241.1 3731492 D 390235 CDS YP_001750242.1 170722554 6112341 3732720..3734045 1 NC_010501.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pen:PSEEN3481 isocitrate lyase; isocitrate lyase 3734045 6112341 PputW619_3389 Pseudomonas putida W619 isocitrate lyase YP_001750242.1 3732720 D 390235 CDS YP_001750243.1 170722555 6112342 3734588..3736345 1 NC_010501.1 TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: pst:PSPTO_0148 oligopeptide transporter, OPT family; OPT family oligopeptide transporter 3736345 6112342 PputW619_3390 Pseudomonas putida W619 OPT family oligopeptide transporter YP_001750243.1 3734588 D 390235 CDS YP_001750244.1 170722556 6112343 3736747..3736989 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3736989 6112343 PputW619_3391 Pseudomonas putida W619 hypothetical protein YP_001750244.1 3736747 D 390235 CDS YP_001750245.1 170722557 6112344 3737140..3737409 1 NC_010501.1 KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 3737409 6112344 PputW619_3392 Pseudomonas putida W619 hypothetical protein YP_001750245.1 3737140 D 390235 CDS YP_001750246.1 170722558 6112345 3737849..3738091 1 NC_010501.1 KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3738091 6112345 PputW619_3393 Pseudomonas putida W619 hypothetical protein YP_001750246.1 3737849 D 390235 CDS YP_001750247.1 170722559 6112346 3738242..3738511 1 NC_010501.1 KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 3738511 6112346 PputW619_3394 Pseudomonas putida W619 hypothetical protein YP_001750247.1 3738242 D 390235 CDS YP_001750248.1 170722560 6112348 3738862..3739533 1 NC_010501.1 PFAM: protein of unknown function UPF0005; KEGG: pen:PSEEN2225 hypothetical protein; hypothetical protein 3739533 6112348 PputW619_3395 Pseudomonas putida W619 hypothetical protein YP_001750248.1 3738862 D 390235 CDS YP_001750249.1 170722561 6112349 3739756..3741135 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN2224 transporter, xanthine/uracil permease family; xanthine permease 3741135 6112349 PputW619_3396 Pseudomonas putida W619 xanthine permease YP_001750249.1 3739756 D 390235 CDS YP_001750250.1 170722562 6112350 3741221..3741613 1 NC_010501.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3741613 6112350 PputW619_3397 Pseudomonas putida W619 sulfur transfer complex subunit TusD YP_001750250.1 3741221 D 390235 CDS YP_001750251.1 170722563 6112351 3741615..3741974 1 NC_010501.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3741974 6112351 PputW619_3398 Pseudomonas putida W619 sulfur relay protein TusC YP_001750251.1 3741615 D 390235 CDS YP_001750252.1 170722564 6112352 3741974..3742270 1 NC_010501.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: pen:PSEEN2221 hypothetical protein; sulfur relay protein TusB/DsrH 3742270 6112352 PputW619_3399 Pseudomonas putida W619 sulfur relay protein TusB/DsrH YP_001750252.1 3741974 D 390235 CDS YP_001750253.1 170722565 6112353 3742267..3742602 1 NC_010501.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pen:PSEEN2220 sulfite reductase, gamma subunit DsrC-like; TusE/DsrC/DsvC family sulfur relay protein 3742602 6112353 PputW619_3400 Pseudomonas putida W619 TusE/DsrC/DsvC family sulfur relay protein YP_001750253.1 3742267 D 390235 CDS YP_001750254.1 170722566 6112354 3742599..3743603 1 NC_010501.1 PFAM: glycosyl transferase family 3; KEGG: pen:PSEEN2219 phosphoribosyltransferase; hypothetical protein 3743603 6112354 PputW619_3401 Pseudomonas putida W619 hypothetical protein YP_001750254.1 3742599 D 390235 CDS YP_001750255.1 170722567 6112355 3743696..3744652 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN2218 hypothetical protein; glutathione S-transferase domain-containing protein 3744652 6112355 PputW619_3402 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001750255.1 3743696 D 390235 CDS YP_001750256.1 170722568 6112356 complement(3744684..3746078) 1 NC_010501.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2217 siroheme synthase; uroporphyrin-III C-methyltransferase 3746078 6112356 PputW619_3403 Pseudomonas putida W619 uroporphyrin-III C-methyltransferase YP_001750256.1 3744684 R 390235 CDS YP_001750257.1 170722569 6112357 complement(3746079..3747359) 1 NC_010501.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3747359 6112357 PputW619_3404 Pseudomonas putida W619 seryl-tRNA synthetase YP_001750257.1 3746079 R 390235 CDS YP_001750258.1 170722570 6112358 complement(3747396..3747596) 1 NC_010501.1 KEGG: pen:PSEEN2215 CrcB protein; CrcB protein 3747596 6112358 PputW619_3405 Pseudomonas putida W619 CrcB protein YP_001750258.1 3747396 R 390235 CDS YP_001750259.1 170722571 6112359 complement(3747593..3748918) 1 NC_010501.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN2214 DNA-dependant ATPase; recombination factor protein RarA 3748918 6112359 PputW619_3406 Pseudomonas putida W619 recombination factor protein RarA YP_001750259.1 3747593 R 390235 CDS YP_001750260.1 170722572 6112360 complement(3748931..3749566) 1 NC_010501.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 3749566 lolA 6112360 lolA Pseudomonas putida W619 outer-membrane lipoprotein carrier protein YP_001750260.1 3748931 R 390235 CDS YP_001750261.1 170722573 6112361 complement(3749630..3752089) 1 NC_010501.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pen:PSEEN2212 cell division protein FtsK; cell division protein FtsK 3752089 6112361 PputW619_3408 Pseudomonas putida W619 cell division protein FtsK YP_001750261.1 3749630 R 390235 CDS YP_001750262.1 170722574 6112362 3752470..3753150 1 NC_010501.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3753150 aat 6112362 aat Pseudomonas putida W619 leucyl/phenylalanyl-tRNA--protein transferase YP_001750262.1 3752470 D 390235 CDS YP_001750263.1 170722575 6112363 3753207..3753914 1 NC_010501.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3753914 6112363 PputW619_3410 Pseudomonas putida W619 arginyl-tRNA-protein transferase YP_001750263.1 3753207 D 390235 CDS YP_001750264.1 170722576 6112364 3754017..3754235 1 NC_010501.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3754235 infA 6112364 infA Pseudomonas putida W619 translation initiation factor IF-1 YP_001750264.1 3754017 D 390235 CDS YP_001750265.1 170722577 6112365 complement(3754320..3756590) 1 NC_010501.1 KEGG: pen:PSEEN2207 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 3756590 6112365 PputW619_3412 Pseudomonas putida W619 ATP-dependent Clp protease ATP-binding protein ClpA YP_001750265.1 3754320 R 390235 CDS YP_001750266.1 170722578 6112366 complement(3756621..3756983) 1 NC_010501.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 3756983 clpS 6112366 clpS Pseudomonas putida W619 ATP-dependent Clp protease adaptor protein ClpS YP_001750266.1 3756621 R 390235 CDS YP_001750267.1 170722579 6112367 3757214..3757465 1 NC_010501.1 KEGG: pen:PSEEN2205 cold-shock protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3757465 6112367 PputW619_3414 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001750267.1 3757214 D 390235 CDS YP_001750268.1 170722580 6112368 complement(3757538..3758794) 1 NC_010501.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pen:PSEEN2204 isocitrate dehydrogenase; isocitrate dehydrogenase 3758794 6112368 PputW619_3415 Pseudomonas putida W619 isocitrate dehydrogenase YP_001750268.1 3757538 R 390235 CDS YP_001750269.1 170722581 6112369 3759211..3761436 1 NC_010501.1 KEGG: pen:PSEEN2202 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 3761436 6112369 PputW619_3416 Pseudomonas putida W619 isocitrate dehydrogenase YP_001750269.1 3759211 D 390235 CDS YP_001750270.1 170722582 6112370 3761550..3761990 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2201 hydrolase, NUDIX family; NUDIX hydrolase 3761990 6112370 PputW619_3417 Pseudomonas putida W619 NUDIX hydrolase YP_001750270.1 3761550 D 390235 CDS YP_001750271.1 170722583 6112371 3762050..3763174 1 NC_010501.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3763174 mnmA 6112371 mnmA Pseudomonas putida W619 tRNA-specific 2-thiouridylase MnmA YP_001750271.1 3762050 D 390235 CDS YP_001750272.1 170722584 6112372 3763171..3763797 1 NC_010501.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 3763797 6112372 PputW619_3419 Pseudomonas putida W619 hypothetical protein YP_001750272.1 3763171 D 390235 CDS YP_001750273.1 170722585 6112373 3763941..3765359 1 NC_010501.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3765359 6112373 PputW619_3420 Pseudomonas putida W619 adenylosuccinate lyase YP_001750273.1 3763941 D 390235 CDS YP_001750274.1 170722586 6112374 3765441..3766607 1 NC_010501.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: pen:PSEEN2197 hypothetical protein; cupin 4 family protein 3766607 6112374 PputW619_3421 Pseudomonas putida W619 cupin 4 family protein YP_001750274.1 3765441 D 390235 CDS YP_001750275.1 170722587 6112375 3766600..3767034 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2196 acetyl transferase, GNAT family; N-acetyltransferase GCN5 3767034 6112375 PputW619_3422 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001750275.1 3766600 D 390235 CDS YP_001750276.1 170722588 6112376 3767298..3769262 1 NC_010501.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 3769262 6112376 PputW619_3423 Pseudomonas putida W619 DNA topoisomerase III YP_001750276.1 3767298 D 390235 CDS YP_001750277.1 170722589 6112377 complement(3769287..3769865) 1 NC_010501.1 PFAM: DinB family protein; KEGG: pen:PSEEN3505 hypothetical protein; DinB family protein 3769865 6112377 PputW619_3424 Pseudomonas putida W619 DinB family protein YP_001750277.1 3769287 R 390235 CDS YP_001750278.1 170722590 6112378 complement(3769878..3770984) 1 NC_010501.1 PFAM: AFG1-family ATPase; KEGG: pen:PSEEN3506 AFG1-like ATPase; AFG1 family ATPase 3770984 6112378 PputW619_3425 Pseudomonas putida W619 AFG1 family ATPase YP_001750278.1 3769878 R 390235 CDS YP_001750279.1 170722591 6112379 complement(3771105..3772253) 1 NC_010501.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pen:PSEEN3507 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase 3772253 6112379 PputW619_3426 Pseudomonas putida W619 glucose sorbosone dehydrogenase YP_001750279.1 3771105 R 390235 CDS YP_001750280.1 170722592 6112380 complement(3772277..3772594) 1 NC_010501.1 KEGG: pen:PSEEN3508 hypothetical protein; hypothetical protein 3772594 6112380 PputW619_3427 Pseudomonas putida W619 hypothetical protein YP_001750280.1 3772277 R 390235 CDS YP_001750281.1 170722593 6112381 3772858..3773346 1 NC_010501.1 SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN3512 lipoprotein; water stress/hypersensitive response domain-containing protein 3773346 6112381 PputW619_3428 Pseudomonas putida W619 water stress/hypersensitive response domain-containing protein YP_001750281.1 3772858 D 390235 CDS YP_001750282.1 170722594 6112382 complement(3773361..3773624) 1 NC_010501.1 KEGG: pen:PSEEN3514 hypothetical protein; hypothetical protein 3773624 6112382 PputW619_3429 Pseudomonas putida W619 hypothetical protein YP_001750282.1 3773361 R 390235 CDS YP_001750283.1 170722595 6112383 3773751..3774071 1 NC_010501.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3515 hypothetical protein; hypothetical protein 3774071 6112383 PputW619_3430 Pseudomonas putida W619 hypothetical protein YP_001750283.1 3773751 D 390235 CDS YP_001750284.1 170722596 6112384 complement(3774106..3774777) 1 NC_010501.1 PFAM: tRNA--hydroxylase; KEGG: pen:PSEEN3516 hypothetical protein; tRNA--hydroxylase 3774777 6112384 PputW619_3431 Pseudomonas putida W619 tRNA--hydroxylase YP_001750284.1 3774106 R 390235 CDS YP_001750285.1 170722597 6112385 3774878..3775741 1 NC_010501.1 PFAM: UspA domain protein; KEGG: pae:PA1789 hypothetical protein; UspA domain-containing protein 3775741 6112385 PputW619_3432 Pseudomonas putida W619 UspA domain-containing protein YP_001750285.1 3774878 D 390235 CDS YP_001750286.1 170722598 6112391 3781567..3782454 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3524 transporter, EamA family; hypothetical protein 3782454 6112391 PputW619_3433 Pseudomonas putida W619 hypothetical protein YP_001750286.1 3781567 D 390235 CDS YP_001750287.1 170722599 6112392 3782675..3782926 1 NC_010501.1 KEGG: pen:PSEEN3527 lipoprotein; lipoprotein 3782926 6112392 PputW619_3434 Pseudomonas putida W619 lipoprotein YP_001750287.1 3782675 D 390235 CDS YP_001750288.1 170722600 6112393 complement(3782983..3784791) 1 NC_010501.1 PFAM: creatinase; peptidase M24; KEGG: pen:PSEEN3528 peptidase, M24 family protein; peptidase M24 3784791 6112393 PputW619_3435 Pseudomonas putida W619 peptidase M24 YP_001750288.1 3782983 R 390235 CDS YP_001750289.1 170722601 6112394 3785012..3786127 1 NC_010501.1 KEGG: pmy:Pmen_2290 hypothetical protein; hypothetical protein 3786127 6112394 PputW619_3436 Pseudomonas putida W619 hypothetical protein YP_001750289.1 3785012 D 390235 CDS YP_001750290.1 170722602 6112395 3786114..3786884 1 NC_010501.1 KEGG: pmy:Pmen_2291 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 3786884 6112395 PputW619_3437 Pseudomonas putida W619 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001750290.1 3786114 D 390235 CDS YP_001750291.1 170722603 6112397 3787329..3787781 1 NC_010501.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN3530 transcriptional activator for superoxide response; Fe-S center for redox-sensing (MerR family); MerR family transcriptional regulator 3787781 6112397 PputW619_3439 Pseudomonas putida W619 MerR family transcriptional regulator YP_001750291.1 3787329 D 390235 CDS YP_001750292.1 170722604 6112398 3787849..3788397 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_5042 isochorismatase hydrolase; isochorismatase hydrolase 3788397 6112398 PputW619_3440 Pseudomonas putida W619 isochorismatase hydrolase YP_001750292.1 3787849 D 390235 CDS YP_001750293.1 170722605 6112399 complement(3788402..3788965) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN3531 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 3788965 6112399 PputW619_3441 Pseudomonas putida W619 XRE family transcriptional regulator YP_001750293.1 3788402 R 390235 CDS YP_001750294.1 170722606 6112400 3789049..3789993 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3532 hypothetical protein; hypothetical protein 3789993 6112400 PputW619_3442 Pseudomonas putida W619 hypothetical protein YP_001750294.1 3789049 D 390235 CDS YP_001750295.1 170722607 6112401 3790143..3793058 1 NC_010501.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 3793058 6112401 PputW619_3443 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit A YP_001750295.1 3790143 D 390235 CDS YP_001750296.1 170722608 6112402 3793058..3793402 1 NC_010501.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 3793402 6112402 PputW619_3444 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit C YP_001750296.1 3793058 D 390235 CDS YP_001750297.1 170722609 6112403 3793399..3795078 1 NC_010501.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 3795078 6112403 PputW619_3445 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit D YP_001750297.1 3793399 D 390235 CDS YP_001750298.1 170722610 6112404 3795075..3795563 1 NC_010501.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 3795563 6112404 PputW619_3446 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit E YP_001750298.1 3795075 D 390235 CDS YP_001750299.1 170722611 6112405 3795560..3795838 1 NC_010501.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 3795838 6112405 PputW619_3447 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit F YP_001750299.1 3795560 D 390235 CDS YP_001750300.1 170722612 6112406 3795835..3796200 1 NC_010501.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3796200 6112406 PputW619_3448 Pseudomonas putida W619 putative monovalent cation/H+ antiporter subunit G YP_001750300.1 3795835 D 390235 CDS YP_001750301.1 170722613 6112407 complement(3796213..3796425) 1 NC_010501.1 KEGG: pen:PSEEN3539 hypothetical protein; hypothetical protein 3796425 6112407 PputW619_3449 Pseudomonas putida W619 hypothetical protein YP_001750301.1 3796213 R 390235 CDS YP_001750302.1 170722614 6112408 complement(3796422..3796928) 1 NC_010501.1 KEGG: pen:PSEEN3540 hypothetical protein; hypothetical protein 3796928 6112408 PputW619_3450 Pseudomonas putida W619 hypothetical protein YP_001750302.1 3796422 R 390235 CDS YP_001750303.1 170722615 6112409 complement(3797393..3797587) 1 NC_010501.1 KEGG: pen:PSEEN3541 hypothetical protein; hypothetical protein 3797587 6112409 PputW619_3451 Pseudomonas putida W619 hypothetical protein YP_001750303.1 3797393 R 390235 CDS YP_001750304.1 170722616 6112410 complement(3797770..3798174) 1 NC_010501.1 PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN3543 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator 3798174 6112410 PputW619_3452 Pseudomonas putida W619 TraR/DksA family transcriptional regulator YP_001750304.1 3797770 R 390235 CDS YP_001750305.1 170722617 6112411 3798468..3803051 1 NC_010501.1 KEGG: pen:PSEEN3544 hypothetical protein; hypothetical protein 3803051 6112411 PputW619_3453 Pseudomonas putida W619 hypothetical protein YP_001750305.1 3798468 D 390235 CDS YP_001750306.1 170722618 6112412 complement(3803038..3803811) 1 NC_010501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN3545 enoyl-CoA hydratase, FadB1x; enoyl-CoA hydratase/isomerase 3803811 6112412 PputW619_3454 Pseudomonas putida W619 enoyl-CoA hydratase/isomerase YP_001750306.1 3803038 R 390235 CDS YP_001750307.1 170722619 6112413 complement(3803825..3804952) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3546 acyl-CoA dehydrogenase protein FadFx; acyl-CoA dehydrogenase domain-containing protein 3804952 6112413 PputW619_3455 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001750307.1 3803825 R 390235 CDS YP_001750308.1 170722620 6112414 complement(3804961..3806154) 1 NC_010501.1 KEGG: pen:PSEEN3547 acetyl-CoA acetyltransferase with thiolase domain FadAx; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; acetyl-CoA acetyltransferase 3806154 6112414 PputW619_3456 Pseudomonas putida W619 acetyl-CoA acetyltransferase YP_001750308.1 3804961 R 390235 CDS YP_001750309.1 170722621 6112415 complement(3806166..3806933) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN3548 3-hydroxyacyl-CoA dehydrogenase FadB2x; short-chain dehydrogenase/reductase SDR 3806933 6112415 PputW619_3457 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001750309.1 3806166 R 390235 CDS YP_001750310.1 170722622 6112416 complement(3806947..3808590) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3549 acetyl-coA synthetase/AMP-(fatty) acid ligase FadDx; AMP-dependent synthetase and ligase 3808590 6112416 PputW619_3458 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001750310.1 3806947 R 390235 CDS YP_001750311.1 170722623 6112417 complement(3808769..3809779) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3551 transcriptional regulator, AraC family; AraC family transcriptional regulator 3809779 6112417 PputW619_3459 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750311.1 3808769 R 390235 CDS YP_001750312.1 170722624 6112418 complement(3809844..3810707) 1 NC_010501.1 TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3552 transcriptional regulator, LysR family; LysR family transcriptional regulator 3810707 6112418 PputW619_3460 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750312.1 3809844 R 390235 CDS YP_001750313.1 170722625 6112419 3810843..3811949 1 NC_010501.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 3811949 6112419 PputW619_3461 Pseudomonas putida W619 2-aminoethylphosphonate--pyruvate transaminase YP_001750313.1 3810843 D 390235 CDS YP_001750314.1 170722626 6112420 3811984..3812811 1 NC_010501.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3812811 6112420 PputW619_3462 Pseudomonas putida W619 phosphonoacetaldehyde hydrolase YP_001750314.1 3811984 D 390235 CDS YP_001750315.1 170722627 6112421 complement(3812920..3813480) 1 NC_010501.1 PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN3555 oxidoreductase, flavoprotein; NADPH-dependent FMN reductase 3813480 6112421 PputW619_3463 Pseudomonas putida W619 NADPH-dependent FMN reductase YP_001750315.1 3812920 R 390235 CDS YP_001750316.1 170722628 6112422 3813637..3813855 1 NC_010501.1 KEGG: pen:PSEEN3556 hypothetical protein; hypothetical protein 3813855 6112422 PputW619_3464 Pseudomonas putida W619 hypothetical protein YP_001750316.1 3813637 D 390235 CDS YP_001750317.1 170722629 6112423 complement(3813839..3816088) 1 NC_010501.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase; lysine decarboxylase 3816088 6112423 PputW619_3465 Pseudomonas putida W619 lysine decarboxylase YP_001750317.1 3813839 R 390235 CDS YP_001750318.1 170722630 6112424 complement(3816245..3817009) 1 NC_010501.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3817009 6112424 PputW619_3466 Pseudomonas putida W619 DNA polymerase III subunit epsilon YP_001750318.1 3816245 R 390235 CDS YP_001750319.1 170722631 6112425 complement(3817061..3817507) 1 NC_010501.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 3817507 rnhA 6112425 rnhA Pseudomonas putida W619 ribonuclease H YP_001750319.1 3817061 R 390235 CDS YP_001750320.1 170722632 6112426 complement(3817521..3818294) 1 NC_010501.1 KEGG: pen:PSEEN3560 hypothetical protein; hypothetical protein 3818294 6112426 PputW619_3468 Pseudomonas putida W619 hypothetical protein YP_001750320.1 3817521 R 390235 CDS YP_001750321.1 170722633 6112427 3818381..3819160 1 NC_010501.1 KEGG: pen:PSEEN3561 hydroxyacylglutathione hydrolase GloB; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 3819160 6112427 PputW619_3469 Pseudomonas putida W619 hydroxyacylglutathione hydrolase YP_001750321.1 3818381 D 390235 CDS YP_001750322.1 170722634 6112428 3819261..3820682 1 NC_010501.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: pen:PSEEN3562 membrane-bound lytic murein transglycosylase D MltD; MltD domain-containing protein 3820682 6112428 PputW619_3470 Pseudomonas putida W619 MltD domain-containing protein YP_001750322.1 3819261 D 390235 CDS YP_001750323.1 170722635 6112429 3820803..3822632 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3564 ABC transporter, periplamic binding protein; extracellular solute-binding protein 3822632 6112429 PputW619_3471 Pseudomonas putida W619 extracellular solute-binding protein YP_001750323.1 3820803 D 390235 CDS YP_001750324.1 170722636 6112430 3822629..3824464 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3565 ABC transporter, periplamic binding protein; extracellular solute-binding protein 3824464 6112430 PputW619_3472 Pseudomonas putida W619 extracellular solute-binding protein YP_001750324.1 3822629 D 390235 CDS YP_001750325.1 170722637 6112431 3824466..3825539 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3566 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3825539 6112431 PputW619_3473 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750325.1 3824466 D 390235 CDS YP_001750326.1 170722638 6112432 3825541..3826560 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3567 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3826560 6112432 PputW619_3474 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750326.1 3825541 D 390235 CDS YP_001750327.1 170722639 6112433 3826562..3828172 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3568 ABC transporter, ATP-binding protein; ABC transporter-like protein 3828172 6112433 PputW619_3475 Pseudomonas putida W619 ABC transporter-like protein YP_001750327.1 3826562 D 390235 CDS YP_001750328.1 170722640 6112434 3828513..3829028 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 factor 3829028 6112434 PputW619_3476 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001750328.1 3828513 D 390235 CDS YP_001750329.1 170722641 6112435 3829025..3829987 1 NC_010501.1 with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; fec operon regulator FecR 3829987 6112435 PputW619_3477 Pseudomonas putida W619 fec operon regulator FecR YP_001750329.1 3829025 D 390235 CDS YP_001750330.1 170722642 6112436 3830074..3832551 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2293 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 3832551 6112436 PputW619_3478 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001750330.1 3830074 D 390235 CDS YP_001750331.1 170722643 6112437 complement(3832595..3833947) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1254 general substrate transporter; major facilitator transporter 3833947 6112437 PputW619_3479 Pseudomonas putida W619 major facilitator transporter YP_001750331.1 3832595 R 390235 CDS YP_001750332.1 170722644 6112438 complement(3834082..3835380) 1 NC_010501.1 KEGG: psp:PSPPH_0906 sensory box protein/methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 3835380 6112438 PputW619_3480 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001750332.1 3834082 R 390235 CDS YP_001750333.1 170722645 6112439 complement(3835413..3837191) 1 NC_010501.1 PFAM: EAL domain protein; GAF domain protein; KEGG: psp:PSPPH_4247 GAF domain/GGDEF domain/EAL domain protein; diguanylate phosphodiesterase 3837191 6112439 PputW619_3481 Pseudomonas putida W619 diguanylate phosphodiesterase YP_001750333.1 3835413 R 390235 CDS YP_001750334.1 170722646 6112440 complement(3837593..3838288) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3605 transcriptional regulator of kdp operon; two component transcriptional regulator 3838288 6112440 PputW619_3482 Pseudomonas putida W619 two component transcriptional regulator YP_001750334.1 3837593 R 390235 CDS YP_001750335.1 170722647 6112441 complement(3838285..3840939) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: pen:PSEEN3606 two-component sensor KdpD sensory kinase; osmosensitive K+ channel signal transduction histidine kinase 3840939 6112441 PputW619_3483 Pseudomonas putida W619 osmosensitive K+ channel signal transduction histidine kinase YP_001750335.1 3838285 R 390235 CDS YP_001750336.1 170722648 6112442 complement(3841090..3841641) 1 NC_010501.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 3841641 6112442 PputW619_3484 Pseudomonas putida W619 potassium-transporting ATPase subunit C YP_001750336.1 3841090 R 390235 CDS YP_001750337.1 170722649 6112443 complement(3841652..3843706) 1 NC_010501.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 3843706 6112443 PputW619_3485 Pseudomonas putida W619 potassium-transporting ATPase subunit B YP_001750337.1 3841652 R 390235 CDS YP_001750338.1 170722650 6112444 complement(3843717..3845411) 1 NC_010501.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3845411 6112444 PputW619_3486 Pseudomonas putida W619 potassium-transporting ATPase subunit A YP_001750338.1 3843717 R 390235 CDS YP_001750339.1 170722651 6112445 complement(3845687..3846751) 1 NC_010501.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3611 hypothetical protein; hypothetical protein 3846751 6112445 PputW619_3487 Pseudomonas putida W619 hypothetical protein YP_001750339.1 3845687 R 390235 CDS YP_001750340.1 170722652 6112446 complement(3846752..3847543) 1 NC_010501.1 KEGG: pen:PSEEN3612 hypothetical protein; hypothetical protein 3847543 6112446 PputW619_3488 Pseudomonas putida W619 hypothetical protein YP_001750340.1 3846752 R 390235 CDS YP_001750341.1 170722653 6112447 complement(3847653..3848507) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: pen:PSEEN3613 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 3848507 6112447 PputW619_3489 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001750341.1 3847653 R 390235 CDS YP_001750342.1 170722654 6112448 complement(3848504..3849292) 1 NC_010501.1 KEGG: pen:PSEEN3614 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 3849292 6112448 PputW619_3490 Pseudomonas putida W619 alpha/beta fold family hydrolase YP_001750342.1 3848504 R 390235 CDS YP_001750343.1 170722655 6112449 complement(3849465..3849923) 1 NC_010501.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN3616 phosphohistidine phosphatase SixA; phosphohistidine phosphatase SixA 3849923 6112449 PputW619_3491 Pseudomonas putida W619 phosphohistidine phosphatase SixA YP_001750343.1 3849465 R 390235 CDS YP_001750344.1 170722656 6112450 complement(3849920..3850267) 1 NC_010501.1 KEGG: pen:PSEEN3617 hypothetical protein; hypothetical protein 3850267 6112450 PputW619_3492 Pseudomonas putida W619 hypothetical protein YP_001750344.1 3849920 R 390235 CDS YP_001750345.1 170722657 6112451 complement(3850304..3851329) 1 NC_010501.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3851329 gpsA 6112451 gpsA Pseudomonas putida W619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001750345.1 3850304 R 390235 CDS YP_001750346.1 170722658 6112452 3851483..3853630 1 NC_010501.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3619 TonB-dependent receptor; TonB-dependent receptor plug 3853630 6112452 PputW619_3494 Pseudomonas putida W619 TonB-dependent receptor plug YP_001750346.1 3851483 D 390235 CDS YP_001750347.1 170722659 6112453 3853630..3854520 1 NC_010501.1 KEGG: pen:PSEEN3620 hypothetical protein; hypothetical protein 3854520 6112453 PputW619_3495 Pseudomonas putida W619 hypothetical protein YP_001750347.1 3853630 D 390235 CDS YP_001750348.1 170722660 6112454 3854517..3856448 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3621 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 3856448 6112454 PputW619_3496 Pseudomonas putida W619 integral membrane sensor hybrid histidine kinase YP_001750348.1 3854517 D 390235 CDS YP_001750349.1 170722661 6112455 3856650..3857165 1 NC_010501.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3857165 6112455 PputW619_3497 Pseudomonas putida W619 3-hydroxydecanoyl-ACP dehydratase YP_001750349.1 3856650 D 390235 CDS YP_001750350.1 170722662 6112456 3857177..3858397 1 NC_010501.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 3858397 6112456 PputW619_3498 Pseudomonas putida W619 3-oxoacyl-ACP synthase YP_001750350.1 3857177 D 390235 CDS YP_001750351.1 170722663 6112457 complement(3858488..3859501) 1 NC_010501.1 PFAM: amidohydrolase 2; KEGG: pen:PSEEN3625 amidohydrolase; amidohydrolase 2 3859501 6112457 PputW619_3499 Pseudomonas putida W619 amidohydrolase 2 YP_001750351.1 3858488 R 390235 CDS YP_001750352.1 170722664 6112458 3859607..3860470 1 NC_010501.1 PFAM: Pirin domain protein; KEGG: pen:PSEEN3626 hypothetical protein; pirin domain-containing protein 3860470 6112458 PputW619_3500 Pseudomonas putida W619 pirin domain-containing protein YP_001750352.1 3859607 D 390235 CDS YP_001750353.1 170722665 6112459 complement(3860599..3861324) 1 NC_010501.1 PFAM: dienelactone hydrolase; KEGG: pen:PSEEN3627 dienelactone hydrolase; dienelactone hydrolase 3861324 6112459 PputW619_3501 Pseudomonas putida W619 dienelactone hydrolase YP_001750353.1 3860599 R 390235 CDS YP_001750354.1 170722666 6112460 complement(3861389..3863293) 1 NC_010501.1 molecular chaperone; heat shock protein 90 3863293 6112460 PputW619_3502 Pseudomonas putida W619 heat shock protein 90 YP_001750354.1 3861389 R 390235 CDS YP_001750355.1 170722667 6112461 complement(3863363..3863845) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3629 hypothetical protein; thioesterase superfamily protein 3863845 6112461 PputW619_3503 Pseudomonas putida W619 thioesterase superfamily protein YP_001750355.1 3863363 R 390235 CDS YP_001750356.1 170722668 6112462 complement(3863842..3864318) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3630 hypothetical protein; thioesterase superfamily protein 3864318 6112462 PputW619_3504 Pseudomonas putida W619 thioesterase superfamily protein YP_001750356.1 3863842 R 390235 CDS YP_001750357.1 170722669 6112463 3864483..3864752 1 NC_010501.1 KEGG: pen:PSEEN3631 lipoprotein; lipoprotein 3864752 6112463 PputW619_3505 Pseudomonas putida W619 lipoprotein YP_001750357.1 3864483 D 390235 CDS YP_001750358.1 170722670 6112464 complement(3864819..3865568) 1 NC_010501.1 PFAM: protein of unknown function DUF599; KEGG: pen:PSEEN3632 hypothetical protein; hypothetical protein 3865568 6112464 PputW619_3506 Pseudomonas putida W619 hypothetical protein YP_001750358.1 3864819 R 390235 CDS YP_001750359.1 170722671 6112465 complement(3865749..3867062) 1 NC_010501.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: pen:PSEEN3633 branched chain amino acid transporter; branched-chain amino acid transport system II carrier protein 3867062 6112465 PputW619_3507 Pseudomonas putida W619 branched-chain amino acid transport system II carrier protein YP_001750359.1 3865749 R 390235 CDS YP_001750360.1 170722672 6112466 complement(3867455..3868339) 1 NC_010501.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 3868339 6112466 PputW619_3508 Pseudomonas putida W619 succinyl-CoA synthetase subunit alpha YP_001750360.1 3867455 R 390235 CDS YP_001750361.1 170722673 6112467 complement(3868339..3869505) 1 NC_010501.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 3869505 sucC 6112467 sucC Pseudomonas putida W619 succinyl-CoA synthetase subunit beta YP_001750361.1 3868339 R 390235 CDS YP_001750362.1 170722674 6112468 complement(3869678..3871114) 1 NC_010501.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 3871114 6112468 PputW619_3510 Pseudomonas putida W619 dihydrolipoamide dehydrogenase YP_001750362.1 3869678 R 390235 CDS YP_001750363.1 170722675 6112469 complement(3871211..3872413) 1 NC_010501.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 3872413 6112469 PputW619_3511 Pseudomonas putida W619 dihydrolipoamide succinyltransferase YP_001750363.1 3871211 R 390235 CDS YP_001750364.1 170722676 6112470 complement(3872456..3875287) 1 NC_010501.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 3875287 sucA 6112470 sucA Pseudomonas putida W619 2-oxoglutarate dehydrogenase E1 component YP_001750364.1 3872456 R 390235 CDS YP_001750365.1 170722677 6112471 complement(3875534..3876238) 1 NC_010501.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 3876238 sdhB 6112471 sdhB Pseudomonas putida W619 succinate dehydrogenase iron-sulfur subunit YP_001750365.1 3875534 R 390235 CDS YP_001750366.1 170722678 6112472 complement(3876250..3878022) 1 NC_010501.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3878022 sdhA 6112472 sdhA Pseudomonas putida W619 succinate dehydrogenase flavoprotein subunit YP_001750366.1 3876250 R 390235 CDS YP_001750367.1 170722679 6112473 complement(3878026..3878394) 1 NC_010501.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pen:PSEEN3643 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein 3878394 6112473 PputW619_3515 Pseudomonas putida W619 succinate dehydrogenase, hydrophobic membrane anchor protein YP_001750367.1 3878026 R 390235 CDS YP_001750368.1 170722680 6112474 complement(3878388..3878774) 1 NC_010501.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: pen:PSEEN3644 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit 3878774 6112474 PputW619_3516 Pseudomonas putida W619 succinate dehydrogenase, cytochrome b556 subunit YP_001750368.1 3878388 R 390235 CDS YP_001750369.1 170722681 6112475 3879127..3880416 1 NC_010501.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3880416 gltA 6112475 gltA Pseudomonas putida W619 type II citrate synthase YP_001750369.1 3879127 D 390235 CDS YP_001750370.1 170722682 6112476 complement(3880485..3881093) 1 NC_010501.1 PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN3647 hypothetical protein; lipid-binding START domain-containing protein 3881093 6112476 PputW619_3518 Pseudomonas putida W619 lipid-binding START domain-containing protein YP_001750370.1 3880485 R 390235 CDS YP_001750371.1 170722683 6112477 complement(3881125..3881379) 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN3648 hypothetical protein; hypothetical protein 3881379 6112477 PputW619_3519 Pseudomonas putida W619 hypothetical protein YP_001750371.1 3881125 R 390235 CDS YP_001750372.1 170722684 6112478 complement(3881501..3881905) 1 NC_010501.1 KEGG: pen:PSEEN3649 hypothetical protein; hypothetical protein 3881905 6112478 PputW619_3520 Pseudomonas putida W619 hypothetical protein YP_001750372.1 3881501 R 390235 CDS YP_001750373.1 170722685 6112479 complement(3881963..3883405) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3650 transcriptional regulator, GntR family; transcriptional regulator 3883405 6112479 PputW619_3521 Pseudomonas putida W619 transcriptional regulator YP_001750373.1 3881963 R 390235 CDS YP_001750374.1 170722686 6112480 complement(3883589..3884401) 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3654 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein 3884401 6112480 PputW619_3522 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001750374.1 3883589 R 390235 CDS YP_001750375.1 170722687 6112481 complement(3884398..3884751) 1 NC_010501.1 KEGG: pen:PSEEN3655 lipoprotein; lipoprotein 3884751 6112481 PputW619_3523 Pseudomonas putida W619 lipoprotein YP_001750375.1 3884398 R 390235 CDS YP_001750376.1 170722688 6112482 complement(3884761..3885543) 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3656 hypothetical protein; extracellular solute-binding protein 3885543 6112482 PputW619_3524 Pseudomonas putida W619 extracellular solute-binding protein YP_001750376.1 3884761 R 390235 CDS YP_001750377.1 170722689 6112483 complement(3885660..3886589) 1 NC_010501.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN3657 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 3886589 6112483 PputW619_3525 Pseudomonas putida W619 electron transfer flavoprotein subunit alpha YP_001750377.1 3885660 R 390235 CDS YP_001750378.1 170722690 6112484 complement(3886590..3887339) 1 NC_010501.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN3658 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 3887339 6112484 PputW619_3526 Pseudomonas putida W619 electron transfer flavoprotein alpha/beta-subunit YP_001750378.1 3886590 R 390235 CDS YP_001750379.1 170722691 6112485 3887896..3889560 1 NC_010501.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pen:PSEEN3660 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 3889560 6112485 PputW619_3527 Pseudomonas putida W619 electron-transferring-flavoprotein dehydrogenase YP_001750379.1 3887896 D 390235 CDS YP_001750380.1 170722692 6112486 complement(3889629..3890030) 1 NC_010501.1 SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_4193 transcriptional regulator, XRE family; XRE family transcriptional regulator 3890030 6112486 PputW619_3528 Pseudomonas putida W619 XRE family transcriptional regulator YP_001750380.1 3889629 R 390235 CDS YP_001750381.1 170722693 6112487 complement(3890033..3890329) 1 NC_010501.1 KEGG: bbr:BB1411 hypothetical protein; hypothetical protein 3890329 6112487 PputW619_3529 Pseudomonas putida W619 hypothetical protein YP_001750381.1 3890033 R 390235 CDS YP_001750382.1 170722694 6112488 complement(3890424..3891749) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3661 permease, MFS superfamily; major facilitator transporter 3891749 6112488 PputW619_3530 Pseudomonas putida W619 major facilitator transporter YP_001750382.1 3890424 R 390235 CDS YP_001750383.1 170722695 6112489 complement(3891816..3892295) 1 NC_010501.1 KEGG: pen:PSEEN3662 hypothetical protein; response regulator receiver protein 3892295 6112489 PputW619_3531 Pseudomonas putida W619 response regulator receiver protein YP_001750383.1 3891816 R 390235 CDS YP_001750384.1 170722696 6112490 complement(3892466..3892942) 1 NC_010501.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor 3892942 6112490 PputW619_3532 Pseudomonas putida W619 RNA polymerase sigma factor YP_001750384.1 3892466 R 390235 CDS YP_001750385.1 170722697 6112491 3893096..3894325 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3664 RND efflux membrane fusion protein; RND family efflux transporter MFP subunit 3894325 6112491 PputW619_3533 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001750385.1 3893096 D 390235 CDS YP_001750386.1 170722698 6112492 3894326..3896290 1 NC_010501.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pen:PSEEN3665 efflux ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 3896290 6112492 PputW619_3534 Pseudomonas putida W619 ABC transporter-like protein YP_001750386.1 3894326 D 390235 CDS YP_001750387.1 170722699 6112493 3896294..3897697 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3666 multidrug efflux outer membrane protein, RND family; RND efflux system outer membrane lipoprotein 3897697 6112493 PputW619_3535 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001750387.1 3896294 D 390235 CDS YP_001750388.1 170722700 6112494 complement(3897729..3899357) 1 NC_010501.1 KEGG: pfo:Pfl_1854 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 3899357 6112494 PputW619_3536 Pseudomonas putida W619 twin-arginine translocation pathway signal YP_001750388.1 3897729 R 390235 CDS YP_001750389.1 170722701 6112495 3899568..3900920 1 NC_010501.1 PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN3220 membrane dipeptidase; peptidase M19 renal dipeptidase 3900920 6112495 PputW619_3537 Pseudomonas putida W619 peptidase M19 renal dipeptidase YP_001750389.1 3899568 D 390235 CDS YP_001750390.1 170722702 6112496 3900938..3902209 1 NC_010501.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN3221 aminotransferase, class V; class V aminotransferase 3902209 6112496 PputW619_3538 Pseudomonas putida W619 class V aminotransferase YP_001750390.1 3900938 D 390235 CDS YP_001750391.1 170722703 6112497 3902222..3903103 1 NC_010501.1 PFAM: protein of unknown function DUF323; KEGG: pen:PSEEN3222 hypothetical protein; hypothetical protein 3903103 6112497 PputW619_3539 Pseudomonas putida W619 hypothetical protein YP_001750391.1 3902222 D 390235 CDS YP_001750392.1 170722704 6112498 3903178..3904833 1 NC_010501.1 KEGG: pfo:Pfl_1850 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 3904833 6112498 PputW619_3540 Pseudomonas putida W619 cyclic peptide transporter YP_001750392.1 3903178 D 390235 CDS YP_001750393.1 170722705 6112499 3904953..3911366 1 NC_010501.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pap:PSPA7_2859 linear gramicidin synthetase subunit D; amino acid adenylation domain-containing protein 3911366 6112499 PputW619_3541 Pseudomonas putida W619 amino acid adenylation domain-containing protein YP_001750393.1 3904953 D 390235 CDS YP_001750394.1 170722706 6112500 3911366..3919903 1 NC_010501.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: pen:PSEEN3229 pyoverdine sidechain peptide synthetase; amino acid adenylation domain-containing protein 3919903 6112500 PputW619_3542 Pseudomonas putida W619 amino acid adenylation domain-containing protein YP_001750394.1 3911366 D 390235 CDS YP_001750395.1 170722707 6112501 3919964..3920911 1 NC_010501.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN3228 lipase; alpha/beta hydrolase domain-containing protein 3920911 6112501 PputW619_3543 Pseudomonas putida W619 alpha/beta hydrolase domain-containing protein YP_001750395.1 3919964 D 390235 CDS YP_001750396.1 170722708 6112502 complement(3921054..3923588) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3923588 6112502 PputW619_3544 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001750396.1 3921054 R 390235 CDS YP_001750397.1 170722709 6112503 complement(3923961..3927050) 1 NC_010501.1 TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfo:Pfl_1847 amino acid adenylation; amino acid adenylation domain-containing protein 3927050 6112503 PputW619_3545 Pseudomonas putida W619 amino acid adenylation domain-containing protein YP_001750397.1 3923961 R 390235 CDS YP_001750398.1 170722710 6112504 complement(3927047..3937261) 1 NC_010501.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; KEGG: pfo:Pfl_1846 peptide synthase; amino acid adenylation domain-containing protein 3937261 6112504 PputW619_3546 Pseudomonas putida W619 amino acid adenylation domain-containing protein YP_001750398.1 3927047 R 390235 CDS YP_001750399.1 170722711 6112505 3937444..3938574 1 NC_010501.1 SMART: transcription factor jumonji jmjC domain protein; KEGG: pfo:Pfl_1843 transcription factor jumonji, JmjC; transcription factor jumonji domain-containing protein 3938574 6112505 PputW619_3547 Pseudomonas putida W619 transcription factor jumonji domain-containing protein YP_001750399.1 3937444 D 390235 CDS YP_001750400.1 170722712 6112506 complement(3938663..3940054) 1 NC_010501.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 3940054 6112506 PputW619_3548 Pseudomonas putida W619 diaminobutyrate--2-oxoglutarate aminotransferase YP_001750400.1 3938663 R 390235 CDS YP_001750401.1 170722713 6112507 complement(3940211..3941533) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3670 sensor histidine kinase ArmS; integral membrane sensor signal transduction histidine kinase 3941533 6112507 PputW619_3549 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001750401.1 3940211 R 390235 CDS YP_001750402.1 170722714 6112508 complement(3941530..3942213) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3671 DNA-binding response regulator; two component transcriptional regulator 3942213 6112508 PputW619_3550 Pseudomonas putida W619 two component transcriptional regulator YP_001750402.1 3941530 R 390235 CDS YP_001750403.1 170722715 6112509 3942464..3943804 1 NC_010501.1 KEGG: psb:Psyr_0686 hypothetical protein; hypothetical protein 3943804 6112509 PputW619_3551 Pseudomonas putida W619 hypothetical protein YP_001750403.1 3942464 D 390235 CDS YP_001750404.1 170722716 6112510 3943822..3944439 1 NC_010501.1 PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 3944439 6112510 PputW619_3552 Pseudomonas putida W619 GAD-like domain-containing protein YP_001750404.1 3943822 D 390235 CDS YP_001750405.1 170722717 6112511 3944462..3945082 1 NC_010501.1 PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 3945082 6112511 PputW619_3553 Pseudomonas putida W619 GAD-like domain-containing protein YP_001750405.1 3944462 D 390235 CDS YP_001750406.1 170722718 6112512 complement(3945098..3945664) 1 NC_010501.1 KEGG: pen:PSEEN2871 hypothetical protein; hypothetical protein 3945664 6112512 PputW619_3554 Pseudomonas putida W619 hypothetical protein YP_001750406.1 3945098 R 390235 CDS YP_001750407.1 170722719 6112513 complement(3945661..3946632) 1 NC_010501.1 PFAM: protein of unknown function DUF182; KEGG: pau:PA14_61120 putative xanthine dehydrogenase accessory factor X; hypothetical protein 3946632 6112513 PputW619_3555 Pseudomonas putida W619 hypothetical protein YP_001750407.1 3945661 R 390235 CDS YP_001750408.1 170722720 6112514 complement(3946636..3947847) 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN2873 cytochrome c; gluconate 2-dehydrogenase 3947847 6112514 PputW619_3556 Pseudomonas putida W619 gluconate 2-dehydrogenase YP_001750408.1 3946636 R 390235 CDS YP_001750409.1 170722721 6112515 complement(3947850..3948386) 1 NC_010501.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2874 oxidase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3948386 6112515 PputW619_3557 Pseudomonas putida W619 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001750409.1 3947850 R 390235 CDS YP_001750410.1 170722722 6112516 complement(3948379..3951210) 1 NC_010501.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pen:PSEEN2875 oxidase, large subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3951210 6112516 PputW619_3558 Pseudomonas putida W619 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_001750410.1 3948379 R 390235 CDS YP_001750411.1 170722723 6112517 3951476..3953188 1 NC_010501.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: pen:PSEEN1818 thiol:disulfide interchange protein DsbD; protein-disulfide reductase 3953188 6112517 PputW619_3559 Pseudomonas putida W619 protein-disulfide reductase YP_001750411.1 3951476 D 390235 CDS YP_001750412.1 170722724 6112518 3953188..3954024 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1817 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 3954024 6112518 PputW619_3560 Pseudomonas putida W619 redoxin domain-containing protein YP_001750412.1 3953188 D 390235 CDS YP_001750413.1 170722725 6112520 complement(3954914..3967867) 1 NC_010501.1 catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase 3967867 6112520 PputW619_3562 Pseudomonas putida W619 peptide synthase YP_001750413.1 3954914 R 390235 CDS YP_001750414.1 170722726 6112521 3968173..3968703 1 NC_010501.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 3968703 6112521 PputW619_3563 Pseudomonas putida W619 extracytoplasmic-function sigma-70 factor YP_001750414.1 3968173 D 390235 CDS YP_001750415.1 170722727 6112522 complement(3968802..3969815) 1 NC_010501.1 KEGG: pen:PSEEN1813 siderophore biosynthesis protein; siderophore biosynthesis protein 3969815 6112522 PputW619_3564 Pseudomonas putida W619 siderophore biosynthesis protein YP_001750415.1 3968802 R 390235 CDS YP_001750416.1 170722728 6112523 complement(3969880..3970638) 1 NC_010501.1 SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1812 periplasmic binding protein; extracellular solute-binding protein 3970638 6112523 PputW619_3565 Pseudomonas putida W619 extracellular solute-binding protein YP_001750416.1 3969880 R 390235 CDS YP_001750417.1 170722729 6112524 3970844..3971389 1 NC_010501.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN1811 exonuclease; exonuclease RNase T and DNA polymerase III 3971389 6112524 PputW619_3566 Pseudomonas putida W619 exonuclease RNase T and DNA polymerase III YP_001750417.1 3970844 D 390235 CDS YP_001750418.1 170722730 6112525 3971482..3971766 1 NC_010501.1 PFAM: protein of unknown function DUF1255; KEGG: pen:PSEEN1810 hypothetical protein; hypothetical protein 3971766 6112525 PputW619_3567 Pseudomonas putida W619 hypothetical protein YP_001750418.1 3971482 D 390235 CDS YP_001750419.1 170722731 6112526 complement(3971926..3972618) 1 NC_010501.1 KEGG: pen:PSEEN1809 hypothetical protein; hypothetical protein 3972618 6112526 PputW619_3568 Pseudomonas putida W619 hypothetical protein YP_001750419.1 3971926 R 390235 CDS YP_001750420.1 170722732 6112527 3972668..3974092 1 NC_010501.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 3974092 6112527 PputW619_3569 Pseudomonas putida W619 cbb3-type cytochrome c oxidase subunit I YP_001750420.1 3972668 D 390235 CDS YP_001750421.1 170722733 6112528 3974106..3974714 1 NC_010501.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 3974714 6112528 PputW619_3570 Pseudomonas putida W619 cbb3-type cytochrome c oxidase subunit II YP_001750421.1 3974106 D 390235 CDS YP_001750422.1 170722734 6112529 3974720..3974911 1 NC_010501.1 KEGG: pen:PSEEN1805 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 3974911 6112529 PputW619_3571 Pseudomonas putida W619 cytochrome c oxidase, cbb3-type, CcoQ subunit YP_001750422.1 3974720 D 390235 CDS YP_001750423.1 170722735 6112530 3974908..3975849 1 NC_010501.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1804 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 3975849 6112530 PputW619_3572 Pseudomonas putida W619 cytochrome c oxidase, cbb3-type subunit III YP_001750423.1 3974908 D 390235 CDS YP_001750424.1 170722736 6112531 3976257..3977699 1 NC_010501.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 3977699 6112531 PputW619_3573 Pseudomonas putida W619 cbb3-type cytochrome c oxidase subunit I YP_001750424.1 3976257 D 390235 CDS YP_001750425.1 170722737 6112532 3977699..3978307 1 NC_010501.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 3978307 6112532 PputW619_3574 Pseudomonas putida W619 cbb3-type cytochrome c oxidase subunit II YP_001750425.1 3977699 D 390235 CDS YP_001750426.1 170722738 6112533 3978313..3978510 1 NC_010501.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: pen:PSEEN1800 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 3978510 6112533 PputW619_3575 Pseudomonas putida W619 cbb3-type cytochrome oxidase subunit YP_001750426.1 3978313 D 390235 CDS YP_001750427.1 170722739 6112534 3978507..3979487 1 NC_010501.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1799 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 3979487 6112534 PputW619_3576 Pseudomonas putida W619 cytochrome c oxidase, cbb3-type subunit III YP_001750427.1 3978507 D 390235 CDS YP_001750428.1 170722740 6112535 3979762..3981180 1 NC_010501.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN1798 oxidase with iron-sulfur cluster; cytochrome c oxidase accessory protein CcoG 3981180 6112535 PputW619_3577 Pseudomonas putida W619 cytochrome c oxidase accessory protein CcoG YP_001750428.1 3979762 D 390235 CDS YP_001750429.1 170722741 6112536 3981196..3981723 1 NC_010501.1 KEGG: pen:PSEEN1797 hypothetical protein; hypothetical protein 3981723 6112536 PputW619_3578 Pseudomonas putida W619 hypothetical protein YP_001750429.1 3981196 D 390235 CDS YP_001750430.1 170722742 6112537 3981802..3984246 1 NC_010501.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN1796 copper-transporting P-type ATPase CcoI; heavy metal translocating P-type ATPase 3984246 6112537 PputW619_3579 Pseudomonas putida W619 heavy metal translocating P-type ATPase YP_001750430.1 3981802 D 390235 CDS YP_001750431.1 170722743 6112538 3984260..3984472 1 NC_010501.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pen:PSEEN1795 cytochrome oxidase maturation protein, cbb3-type CcoS; cbb3-type cytochrome oxidase maturation protein 3984472 6112538 PputW619_3580 Pseudomonas putida W619 cbb3-type cytochrome oxidase maturation protein YP_001750431.1 3984260 D 390235 CDS YP_001750432.1 170722744 6112539 3984465..3985148 1 NC_010501.1 KEGG: pen:PSEEN1794 hypothetical protein; hypothetical protein 3985148 6112539 PputW619_3581 Pseudomonas putida W619 hypothetical protein YP_001750432.1 3984465 D 390235 CDS YP_001750433.1 170722745 6112540 3985257..3986639 1 NC_010501.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3986639 6112540 PputW619_3582 Pseudomonas putida W619 coproporphyrinogen III oxidase YP_001750433.1 3985257 D 390235 CDS YP_001750434.1 170722746 6112541 3986825..3987559 1 NC_010501.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pen:PSEEN1792 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 3987559 6112541 PputW619_3583 Pseudomonas putida W619 Crp/FNR family transcriptional regulator YP_001750434.1 3986825 D 390235 CDS YP_001750435.1 170722747 6112542 3987615..3988163 1 NC_010501.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3988163 6112542 PputW619_3584 Pseudomonas putida W619 adenine phosphoribosyltransferase YP_001750435.1 3987615 D 390235 CDS YP_001750436.1 170722748 6112543 complement(3988274..3988876) 1 NC_010501.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 3988876 recR 6112543 recR Pseudomonas putida W619 recombination protein RecR YP_001750436.1 3988274 R 390235 CDS YP_001750437.1 170722749 6112544 complement(3989081..3989416) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1789 hypothetical protein; hypothetical protein 3989416 6112544 PputW619_3586 Pseudomonas putida W619 hypothetical protein YP_001750437.1 3989081 R 390235 CDS YP_001750438.1 170722750 6112545 complement(3989480..3991549) 1 NC_010501.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 3991549 6112545 PputW619_3587 Pseudomonas putida W619 DNA polymerase III subunits gamma and tau YP_001750438.1 3989480 R 390235 CDS YP_001750439.1 170722751 6112546 complement(3991688..3992173) 1 NC_010501.1 KEGG: pen:PSEEN1786 hypothetical protein; hypothetical protein 3992173 6112546 PputW619_3588 Pseudomonas putida W619 hypothetical protein YP_001750439.1 3991688 R 390235 CDS YP_001750440.1 170722752 6112547 3992256..3992669 1 NC_010501.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN1785 transcriptional regulator; MerR family transcriptional regulator 3992669 6112547 PputW619_3589 Pseudomonas putida W619 MerR family transcriptional regulator YP_001750440.1 3992256 D 390235 CDS YP_001750441.1 170722753 6112548 3992949..3994274 1 NC_010501.1 PFAM: integrase family protein; KEGG: pen:PSEEN1782 integrase; integrase family protein 3994274 6112548 PputW619_3590 Pseudomonas putida W619 integrase family protein YP_001750441.1 3992949 D 390235 CDS YP_001750442.1 170722754 6112549 3994988..3995743 1 NC_010501.1 PFAM: phage antirepressor protein; KilA domain protein; KEGG: bvi:Bcep1808_4553 KilA, N-terminal domain protein; phage antirepressor protein 3995743 6112549 PputW619_3591 Pseudomonas putida W619 phage antirepressor protein YP_001750442.1 3994988 D 390235 CDS YP_001750443.1 170722755 6112550 3995933..3996856 1 NC_010501.1 hypothetical protein 3996856 6112550 PputW619_3592 Pseudomonas putida W619 hypothetical protein YP_001750443.1 3995933 D 390235 CDS YP_001750444.1 170722756 6112551 3997926..3998156 1 NC_010501.1 PFAM: helix-turn-helix domain protein; KEGG: eci:UTI89_C0292 putative transcription regulator; XRE family transcriptional regulator 3998156 6112551 PputW619_3593 Pseudomonas putida W619 XRE family transcriptional regulator YP_001750444.1 3997926 D 390235 CDS YP_001750445.1 170722757 6112552 3998426..3998668 1 NC_010501.1 hypothetical protein 3998668 6112552 PputW619_3594 Pseudomonas putida W619 hypothetical protein YP_001750445.1 3998426 D 390235 CDS YP_001750446.1 170722758 6112553 3999352..4000065 1 NC_010501.1 PFAM: Resolvase domain; KEGG: pau:PA14_22080 possible resolvase; resolvase domain-containing protein 4000065 6112553 PputW619_3595 Pseudomonas putida W619 resolvase domain-containing protein YP_001750446.1 3999352 D 390235 CDS YP_001750447.1 170722759 6112554 complement(4000293..4001057) 1 NC_010501.1 hypothetical protein 4001057 6112554 PputW619_3596 Pseudomonas putida W619 hypothetical protein YP_001750447.1 4000293 R 390235 CDS YP_001750448.1 170722760 6112555 complement(4001727..4002077) 1 NC_010501.1 KEGG: kpn:KPN_01427 hypothetical protein; hypothetical protein 4002077 6112555 PputW619_3597 Pseudomonas putida W619 hypothetical protein YP_001750448.1 4001727 R 390235 CDS YP_001750449.1 170722761 6112556 complement(4002391..4003515) 1 NC_010501.1 KEGG: csa:Csal_1202 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 4003515 6112556 PputW619_3598 Pseudomonas putida W619 RNA-directed DNA polymerase YP_001750449.1 4002391 R 390235 CDS YP_001750450.1 170722762 6112557 complement(4004304..4005137) 1 NC_010501.1 hypothetical protein 4005137 6112557 PputW619_3599 Pseudomonas putida W619 hypothetical protein YP_001750450.1 4004304 R 390235 CDS YP_001750451.1 170722763 6112559 complement(4005606..4007936) 1 NC_010501.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 4007936 ligA 6112559 ligA Pseudomonas putida W619 NAD-dependent DNA ligase LigA YP_001750451.1 4005606 R 390235 CDS YP_001750452.1 170722764 6112560 complement(4008213..4009097) 1 NC_010501.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 4009097 zipA 6112560 zipA Pseudomonas putida W619 cell division protein ZipA YP_001750452.1 4008213 R 390235 CDS YP_001750453.1 170722765 6112561 complement(4009302..4012790) 1 NC_010501.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pen:PSEEN1767 chromosome segregation SMC protein; chromosome segregation protein SMC 4012790 6112561 PputW619_3602 Pseudomonas putida W619 chromosome segregation protein SMC YP_001750453.1 4009302 R 390235 CDS YP_001750454.1 170722766 6112562 complement(4012794..4013453) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; KEGG: pen:PSEEN1766 transcriptional regulator (GntR-family); GntR family transcriptional regulator 4013453 6112562 PputW619_3603 Pseudomonas putida W619 GntR family transcriptional regulator YP_001750454.1 4012794 R 390235 CDS YP_001750455.1 170722767 6112563 4013721..4015175 1 NC_010501.1 TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pen:PSEEN1765 xanthine dehydrogenase, small subunit XhdA; xanthine dehydrogenase small subunit 4015175 6112563 PputW619_3604 Pseudomonas putida W619 xanthine dehydrogenase small subunit YP_001750455.1 4013721 D 390235 CDS YP_001750456.1 170722768 6112564 4015168..4017567 1 NC_010501.1 KEGG: pen:PSEEN1764 xanthine dehydrogenase, large subunit XhdB; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; xanthine dehydrogenase, molybdopterin binding subunit 4017567 6112564 PputW619_3605 Pseudomonas putida W619 xanthine dehydrogenase, molybdopterin binding subunit YP_001750456.1 4015168 D 390235 CDS YP_001750457.1 170722769 6112565 4017730..4018575 1 NC_010501.1 TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN1763 xanthine dehydrogenase accessory factor XdhC; xanthine dehydrogenase accessory protein XdhC 4018575 6112565 PputW619_3606 Pseudomonas putida W619 xanthine dehydrogenase accessory protein XdhC YP_001750457.1 4017730 D 390235 CDS YP_001750458.1 170722770 6112566 4018586..4019890 1 NC_010501.1 Catalyzes the deamination of guanine; guanine deaminase 4019890 6112566 PputW619_3607 Pseudomonas putida W619 guanine deaminase YP_001750458.1 4018586 D 390235 CDS YP_001750459.1 170722771 6112567 complement(4019887..4020585) 1 NC_010501.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 4020585 6112567 PputW619_3608 Pseudomonas putida W619 aquaporin Z YP_001750459.1 4019887 R 390235 CDS YP_001750460.1 170722772 6112568 complement(4020707..4021462) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1760 transcriptional regulator, GntR family; GntR family transcriptional regulator 4021462 6112568 PputW619_3609 Pseudomonas putida W619 GntR family transcriptional regulator YP_001750460.1 4020707 R 390235 CDS YP_001750461.1 170722773 6112569 4021747..4023096 1 NC_010501.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN1759 transporter; xanthine/uracil/vitamin C permease 4023096 6112569 PputW619_3610 Pseudomonas putida W619 xanthine/uracil/vitamin C permease YP_001750461.1 4021747 D 390235 CDS YP_001750462.1 170722774 6112570 complement(4023392..4023745) 1 NC_010501.1 TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: pen:PSEEN1686 transthyretin; hydroxyisourate hydrolase 4023745 6112570 PputW619_3611 Pseudomonas putida W619 hydroxyisourate hydrolase YP_001750462.1 4023392 R 390235 CDS YP_001750463.1 170722775 6112571 4024123..4025049 1 NC_010501.1 KEGG: pen:PSEEN1685 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 4025049 6112571 PputW619_3612 Pseudomonas putida W619 urate catabolism protein YP_001750463.1 4024123 D 390235 CDS YP_001750464.1 170722776 6112572 4025049..4025564 1 NC_010501.1 KEGG: pen:PSEEN1684 hypothetical protein; hypothetical protein 4025564 6112572 PputW619_3613 Pseudomonas putida W619 hypothetical protein YP_001750464.1 4025049 D 390235 CDS YP_001750465.1 170722777 6112573 4025622..4026125 1 NC_010501.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4026125 6112573 PputW619_3614 Pseudomonas putida W619 ureidoglycolate hydrolase YP_001750465.1 4025622 D 390235 CDS YP_001750466.1 170722778 6112574 4026169..4027497 1 NC_010501.1 PFAM: protein of unknown function DUF989; KEGG: pen:PSEEN1682 hypothetical protein; hypothetical protein 4027497 6112574 PputW619_3615 Pseudomonas putida W619 hypothetical protein YP_001750466.1 4026169 D 390235 CDS YP_001750467.1 170722779 6112575 4027656..4029011 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1681 xanthine/uracil permease; xanthine permease 4029011 6112575 PputW619_3616 Pseudomonas putida W619 xanthine permease YP_001750467.1 4027656 D 390235 CDS YP_001750468.1 170722780 6112576 4029153..4029938 1 NC_010501.1 KEGG: pen:PSEEN1680 hypothetical protein; hypothetical protein 4029938 6112576 PputW619_3617 Pseudomonas putida W619 hypothetical protein YP_001750468.1 4029153 D 390235 CDS YP_001750469.1 170722781 6112577 4030292..4031074 1 NC_010501.1 KEGG: pen:PSEEN1679 hypothetical protein; hypothetical protein 4031074 6112577 PputW619_3618 Pseudomonas putida W619 hypothetical protein YP_001750469.1 4030292 D 390235 CDS YP_001750470.1 170722782 6112578 complement(4031183..4032097) 1 NC_010501.1 PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein 4032097 6112578 PputW619_3619 Pseudomonas putida W619 hypothetical protein YP_001750470.1 4031183 R 390235 CDS YP_001750471.1 170722783 6112579 4032230..4032841 1 NC_010501.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN1675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4032841 6112579 PputW619_3620 Pseudomonas putida W619 TetR family transcriptional regulator YP_001750471.1 4032230 D 390235 CDS YP_001750472.1 170722784 6112580 complement(4032971..4033411) 1 NC_010501.1 PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN1674 hypothetical protein; hypothetical protein 4033411 6112580 PputW619_3621 Pseudomonas putida W619 hypothetical protein YP_001750472.1 4032971 R 390235 CDS YP_001750473.1 170722785 6112581 4033669..4035444 1 NC_010501.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4035444 6112581 PputW619_3622 Pseudomonas putida W619 glyoxylate carboligase YP_001750473.1 4033669 D 390235 CDS YP_001750474.1 170722786 6112582 4035513..4036295 1 NC_010501.1 KEGG: pen:PSEEN1671 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 4036295 6112582 PputW619_3623 Pseudomonas putida W619 hydroxypyruvate isomerase YP_001750474.1 4035513 D 390235 CDS YP_001750475.1 170722787 6112583 4036476..4037369 1 NC_010501.1 KEGG: pen:PSEEN1670 tartronic semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 4037369 6112583 PputW619_3624 Pseudomonas putida W619 2-hydroxy-3-oxopropionate reductase YP_001750475.1 4036476 D 390235 CDS YP_001750476.1 170722788 6112584 4037536..4038810 1 NC_010501.1 PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase 4038810 6112584 PputW619_3625 Pseudomonas putida W619 hydroxypyruvate reductase YP_001750476.1 4037536 D 390235 CDS YP_001750477.1 170722789 6112585 4038807..4040222 1 NC_010501.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4040222 6112585 PputW619_3626 Pseudomonas putida W619 pyruvate kinase YP_001750477.1 4038807 D 390235 CDS YP_001750478.1 170722790 6112586 4040414..4041289 1 NC_010501.1 PFAM: Urea transporter; KEGG: pen:PSEEN1667 transporter; Urea transporter 4041289 6112586 PputW619_3627 Pseudomonas putida W619 Urea transporter YP_001750478.1 4040414 D 390235 CDS YP_001750479.1 170722791 6112587 complement(4041338..4042051) 1 NC_010501.1 KEGG: psp:PSPPH_1154 YD repeat protein; hypothetical protein 4042051 6112587 PputW619_3628 Pseudomonas putida W619 hypothetical protein YP_001750479.1 4041338 R 390235 CDS YP_001750480.1 170722792 6112588 4042105..4042677 1 NC_010501.1 KEGG: pen:PSEEN1667 transporter; Urea transporter-like protein 4042677 6112588 PputW619_3629 Pseudomonas putida W619 Urea transporter-like protein YP_001750480.1 4042105 D 390235 CDS YP_001750481.1 170722793 6112589 4042821..4043645 1 NC_010501.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pen:PSEEN1666 cation transporter, VIC family; Ion transport protein 4043645 6112589 PputW619_3630 Pseudomonas putida W619 Ion transport protein YP_001750481.1 4042821 D 390235 CDS YP_001750482.1 170722794 6112590 complement(4043618..4048105) 1 NC_010501.1 SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein 4048105 6112590 PputW619_3631 Pseudomonas putida W619 hypothetical protein YP_001750482.1 4043618 R 390235 CDS YP_001750483.1 170722795 6112591 4048290..4049288 1 NC_010501.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1665 periplasmic thiosulfate-binding protein; sulfate ABC transporter substrate-binding protein 4049288 6112591 PputW619_3632 Pseudomonas putida W619 sulfate ABC transporter substrate-binding protein YP_001750483.1 4048290 D 390235 CDS YP_001750484.1 170722796 6112592 complement(4049346..4050311) 1 NC_010501.1 KEGG: pen:PSEEN1664 hypothetical protein; hypothetical protein 4050311 6112592 PputW619_3633 Pseudomonas putida W619 hypothetical protein YP_001750484.1 4049346 R 390235 CDS YP_001750485.1 170722797 6112593 complement(4050438..4051334) 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1663 hypothetical protein; hypothetical protein 4051334 6112593 PputW619_3634 Pseudomonas putida W619 hypothetical protein YP_001750485.1 4050438 R 390235 CDS YP_001750486.1 170722798 6112594 4051467..4051904 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1662 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4051904 6112594 PputW619_3635 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001750486.1 4051467 D 390235 CDS YP_001750487.1 170722799 6112595 4052355..4053887 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN1660 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4053887 6112595 PputW619_3636 Pseudomonas putida W619 cytosine/purines uracil thiamine allantoin permease YP_001750487.1 4052355 D 390235 CDS YP_001750488.1 170722800 6112596 4053904..4054632 1 NC_010501.1 PFAM: Asp/Glu/hydantoin racemase; KEGG: pen:PSEEN1659 hydantoin racemase; Asp/Glu/hydantoin racemase 4054632 6112596 PputW619_3637 Pseudomonas putida W619 Asp/Glu/hydantoin racemase YP_001750488.1 4053904 D 390235 CDS YP_001750489.1 170722801 6112597 complement(4054794..4055987) 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1658 D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase 4055987 6112597 PputW619_3638 Pseudomonas putida W619 D-amino-acid dehydrogenase YP_001750489.1 4054794 R 390235 CDS YP_001750490.1 170722802 6112598 complement(4056033..4056695) 1 NC_010501.1 KEGG: pen:PSEEN1657 hypothetical protein; hypothetical protein 4056695 6112598 PputW619_3639 Pseudomonas putida W619 hypothetical protein YP_001750490.1 4056033 R 390235 CDS YP_001750491.1 170722803 6112599 complement(4056915..4057253) 1 NC_010501.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1656 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase 4057253 6112599 PputW619_3640 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001750491.1 4056915 R 390235 CDS YP_001750492.1 170722804 6112600 complement(4057326..4057733) 1 NC_010501.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN1655 hypothetical protein; glutathione-dependent formaldehyde-activating protein 4057733 6112600 PputW619_3641 Pseudomonas putida W619 glutathione-dependent formaldehyde-activating protein YP_001750492.1 4057326 R 390235 CDS YP_001750493.1 170722805 6112601 complement(4057911..4058699) 1 NC_010501.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pen:PSEEN3771 phenazine biosynthesis protein, PhzC/F family; PhzF family phenazine biosynthesis protein 4058699 6112601 PputW619_3642 Pseudomonas putida W619 PhzF family phenazine biosynthesis protein YP_001750493.1 4057911 R 390235 CDS YP_001750494.1 170722806 6112602 complement(4058751..4059689) 1 NC_010501.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN3772 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4059689 6112602 PputW619_3643 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001750494.1 4058751 R 390235 CDS YP_001750495.1 170722807 6112603 complement(4059842..4060261) 1 NC_010501.1 KEGG: pen:PSEEN3773 hypothetical protein; hypothetical protein 4060261 6112603 PputW619_3644 Pseudomonas putida W619 hypothetical protein YP_001750495.1 4059842 R 390235 CDS YP_001750496.1 170722808 6112604 complement(4060274..4061464) 1 NC_010501.1 KEGG: pen:PSEEN3774 cytochrome c-type biogenesis protein CycH; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; cytochrome c-type biogenesis protein CcmI 4061464 6112604 PputW619_3645 Pseudomonas putida W619 cytochrome c-type biogenesis protein CcmI YP_001750496.1 4060274 R 390235 CDS YP_001750497.1 170722809 6112605 complement(4061457..4061933) 1 NC_010501.1 PFAM: cytochrome C biogenesis protein; KEGG: pen:PSEEN3775 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein 4061933 6112605 PputW619_3646 Pseudomonas putida W619 cytochrome C biogenesis protein YP_001750497.1 4061457 R 390235 CDS YP_001750498.1 170722810 6112606 complement(4061930..4062466) 1 NC_010501.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN3776 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 4062466 6112606 PputW619_3647 Pseudomonas putida W619 periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001750498.1 4061930 R 390235 CDS YP_001750499.1 170722811 6112607 complement(4062463..4064451) 1 NC_010501.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3777 periplasmic cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF 4064451 6112607 PputW619_3648 Pseudomonas putida W619 cytochrome c-type biogenesis protein CcmF YP_001750499.1 4062463 R 390235 CDS YP_001750500.1 170722812 6112608 complement(4064448..4064903) 1 NC_010501.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 4064903 6112608 PputW619_3649 Pseudomonas putida W619 cytochrome c-type biogenesis protein CcmE YP_001750500.1 4064448 R 390235 CDS YP_001750501.1 170722813 6112609 complement(4064900..4065076) 1 NC_010501.1 TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: pfo:Pfl_2958 heme exporter protein D; heme exporter protein CcmD 4065076 6112609 PputW619_3650 Pseudomonas putida W619 heme exporter protein CcmD YP_001750501.1 4064900 R 390235 CDS YP_001750502.1 170722814 6112610 complement(4065076..4065840) 1 NC_010501.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3780 cytochrome c-type biogenesis protein CcmC; heme ABC export system, permease protein; heme exporter protein CcmC 4065840 6112610 PputW619_3651 Pseudomonas putida W619 heme exporter protein CcmC YP_001750502.1 4065076 R 390235 CDS YP_001750503.1 170722815 6112611 complement(4065887..4066555) 1 NC_010501.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pen:PSEEN3781 heme ABC export system, permease protein CcmB; heme exporter protein CcmB 4066555 6112611 PputW619_3652 Pseudomonas putida W619 heme exporter protein CcmB YP_001750503.1 4065887 R 390235 CDS YP_001750504.1 170722816 6112612 complement(4066552..4067184) 1 NC_010501.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 4067184 6112612 PputW619_3653 Pseudomonas putida W619 cytochrome c biogenesis protein CcmA YP_001750504.1 4066552 R 390235 CDS YP_001750505.1 170722817 6112613 4067318..4068874 1 NC_010501.1 KEGG: pen:PSEEN3783 hypothetical protein; hypothetical protein 4068874 6112613 PputW619_3654 Pseudomonas putida W619 hypothetical protein YP_001750505.1 4067318 D 390235 CDS YP_001750506.1 170722818 6112614 4068871..4069215 1 NC_010501.1 KEGG: pen:PSEEN3784 hypothetical protein; hypothetical protein 4069215 6112614 PputW619_3655 Pseudomonas putida W619 hypothetical protein YP_001750506.1 4068871 D 390235 CDS YP_001750507.1 170722819 6112615 4069499..4072309 1 NC_010501.1 KEGG: pen:PSEEN3785 hypothetical protein; hypothetical protein 4072309 6112615 PputW619_3656 Pseudomonas putida W619 hypothetical protein YP_001750507.1 4069499 D 390235 CDS YP_001750508.1 170722820 6112616 complement(4072452..4072847) 1 NC_010501.1 KEGG: pen:PSEEN3786 hypothetical protein; hypothetical protein 4072847 6112616 PputW619_3657 Pseudomonas putida W619 hypothetical protein YP_001750508.1 4072452 R 390235 CDS YP_001750509.1 170722821 6112617 complement(4072849..4073328) 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN3787 purine-binding chemotaxis protein CheW; CheW protein 4073328 6112617 PputW619_3658 Pseudomonas putida W619 CheW protein YP_001750509.1 4072849 R 390235 CDS YP_001750510.1 170722822 6112618 complement(4073371..4074246) 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN3788 hypothetical protein; CheW protein 4074246 6112618 PputW619_3659 Pseudomonas putida W619 CheW protein YP_001750510.1 4073371 R 390235 CDS YP_001750511.1 170722823 6112619 complement(4074243..4075034) 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3789 ATPase, ParA family protein; cobyrinic acid ac-diamide synthase 4075034 6112619 PputW619_3660 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001750511.1 4074243 R 390235 CDS YP_001750512.1 170722824 6112620 complement(4075126..4075983) 1 NC_010501.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 4075983 6112620 PputW619_3661 Pseudomonas putida W619 flagellar motor protein MotD YP_001750512.1 4075126 R 390235 CDS YP_001750513.1 170722825 6112621 complement(4075987..4076727) 1 NC_010501.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 4076727 motC 6112621 motC Pseudomonas putida W619 flagellar motor protein YP_001750513.1 4075987 R 390235 CDS YP_001750514.1 170722826 6112622 complement(4076727..4077851) 1 NC_010501.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4077851 6112622 PputW619_3663 Pseudomonas putida W619 chemotaxis-specific methylesterase YP_001750514.1 4076727 R 390235 CDS YP_001750515.1 170722827 6112623 complement(4077898..4080117) 1 NC_010501.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: pen:PSEEN3793 chemotaxis histidine kinase CheA; CheA signal transduction histidine kinase 4080117 6112623 PputW619_3664 Pseudomonas putida W619 CheA signal transduction histidine kinase YP_001750515.1 4077898 R 390235 CDS YP_001750516.1 170722828 6112624 complement(4080130..4080918) 1 NC_010501.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: pen:PSEEN3794 chemotactic response, CheY protein phophatase; chemotaxis phosphatase CheZ 4080918 6112624 PputW619_3665 Pseudomonas putida W619 chemotaxis phosphatase CheZ YP_001750516.1 4080130 R 390235 CDS YP_001750517.1 170722829 6112625 complement(4080937..4081323) 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN3795 chemotaxis protein CheY; response regulator receiver protein 4081323 6112625 PputW619_3666 Pseudomonas putida W619 response regulator receiver protein YP_001750517.1 4080937 R 390235 CDS YP_001750518.1 170722830 6112626 complement(4081416..4082156) 1 NC_010501.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 4082156 fliA 6112626 fliA Pseudomonas putida W619 flagellar biosynthesis sigma factor YP_001750518.1 4081416 R 390235 CDS YP_001750519.1 170722831 6112627 complement(4082153..4082986) 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3797 flagellar number regulator FleN; cobyrinic acid ac-diamide synthase 4082986 6112627 PputW619_3668 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001750519.1 4082153 R 390235 CDS YP_001750520.1 170722832 6112628 complement(4083080..4084387) 1 NC_010501.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 4084387 flhF 6112628 flhF Pseudomonas putida W619 flagellar biosynthesis regulator FlhF YP_001750520.1 4083080 R 390235 CDS YP_001750521.1 170722833 6112629 complement(4084399..4086528) 1 NC_010501.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 4086528 flhA 6112629 flhA Pseudomonas putida W619 flagellar biosynthesis protein FlhA YP_001750521.1 4084399 R 390235 CDS YP_001750522.1 170722834 6112630 4086890..4087633 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mlr7144 transcriptional regulator; GntR family transcriptional regulator 4087633 6112630 PputW619_3671 Pseudomonas putida W619 GntR family transcriptional regulator YP_001750522.1 4086890 D 390235 CDS YP_001750523.1 170722835 6112631 complement(4087593..4088687) 1 NC_010501.1 KEGG: spe:Spro_1367 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 4088687 6112631 PputW619_3672 Pseudomonas putida W619 D-alanine--D-alanine ligase YP_001750523.1 4087593 R 390235 CDS YP_001750524.1 170722836 6112632 4088781..4090409 1 NC_010501.1 KEGG: ret:RHE_PD00205 hypothetical protein; hypothetical protein 4090409 6112632 PputW619_3673 Pseudomonas putida W619 hypothetical protein YP_001750524.1 4088781 D 390235 CDS YP_001750525.1 170722837 6112633 4090402..4091577 1 NC_010501.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: aba:Acid345_1980 cystathionine beta-lyase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 4091577 6112633 PputW619_3674 Pseudomonas putida W619 Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_001750525.1 4090402 D 390235 CDS YP_001750526.1 170722838 6112634 4091614..4092492 1 NC_010501.1 KEGG: rso:RS04684 hypothetical protein; hypothetical protein 4092492 6112634 PputW619_3675 Pseudomonas putida W619 hypothetical protein YP_001750526.1 4091614 D 390235 CDS YP_001750527.1 170722839 6112635 4092503..4093663 1 NC_010501.1 PFAM: aminotransferase class V; KEGG: plu:plu3103 hypothetical protein; class V aminotransferase 4093663 6112635 PputW619_3676 Pseudomonas putida W619 class V aminotransferase YP_001750527.1 4092503 D 390235 CDS YP_001750528.1 170722840 6112636 4093665..4094579 1 NC_010501.1 PFAM: D-alanine--D-alanine ligase domain protein; KEGG: cbf:CLI_0538 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 4094579 6112636 PputW619_3677 Pseudomonas putida W619 D-alanine--D-alanine ligase YP_001750528.1 4093665 D 390235 CDS YP_001750529.1 170722841 6112637 complement(4094735..4095877) 1 NC_010501.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 4095877 flhB 6112637 flhB Pseudomonas putida W619 flagellar biosynthesis protein FlhB YP_001750529.1 4094735 R 390235 CDS YP_001750530.1 170722842 6112638 complement(4095880..4096656) 1 NC_010501.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 4096656 fliR 6112638 fliR Pseudomonas putida W619 flagellar biosynthesis protein FliR YP_001750530.1 4095880 R 390235 CDS YP_001750531.1 170722843 6112639 complement(4096664..4096933) 1 NC_010501.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 4096933 fliQ 6112639 fliQ Pseudomonas putida W619 flagellar biosynthesis protein FliQ YP_001750531.1 4096664 R 390235 CDS YP_001750532.1 170722844 6112640 complement(4096955..4097722) 1 NC_010501.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4097722 fliP 6112640 fliP Pseudomonas putida W619 flagellar biosynthesis protein FliP YP_001750532.1 4096955 R 390235 CDS YP_001750533.1 170722845 6112641 complement(4097722..4098177) 1 NC_010501.1 PFAM: flagellar biosynthesis protein FliO; KEGG: pen:PSEEN3804 flagellar assembly protein FliO; flagellar biosynthesis protein FliO 4098177 6112641 PputW619_3682 Pseudomonas putida W619 flagellar biosynthesis protein FliO YP_001750533.1 4097722 R 390235 CDS YP_001750534.1 170722846 6112642 complement(4098178..4098642) 1 NC_010501.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 4098642 fliN 6112642 fliN Pseudomonas putida W619 flagellar motor switch protein YP_001750534.1 4098178 R 390235 CDS YP_001750535.1 170722847 6112643 complement(4098690..4099658) 1 NC_010501.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 4099658 fliM 6112643 fliM Pseudomonas putida W619 flagellar motor switch protein FliM YP_001750535.1 4098690 R 390235 CDS YP_001750536.1 170722848 6112644 complement(4099668..4100165) 1 NC_010501.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 4100165 fliL 6112644 fliL Pseudomonas putida W619 flagellar basal body-associated protein FliL YP_001750536.1 4099668 R 390235 CDS YP_001750537.1 170722849 6112645 complement(4100297..4101604) 1 NC_010501.1 PFAM: flagellar hook-length control protein; KEGG: pen:PSEEN3808 flagellar hook-length control protein FliK; flagellar hook-length control protein 4101604 6112645 PputW619_3686 Pseudomonas putida W619 flagellar hook-length control protein YP_001750537.1 4100297 R 390235 CDS YP_001750538.1 170722850 6112646 complement(4101677..4102015) 1 NC_010501.1 PFAM: Hpt domain protein; KEGG: pen:PSEEN3809 hypothetical protein; Hpt protein 4102015 6112646 PputW619_3687 Pseudomonas putida W619 Hpt protein YP_001750538.1 4101677 R 390235 CDS YP_001750539.1 170722851 6112647 complement(4102073..4103767) 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3810 sensor histidine kinase/response regulator (hybrid); response regulator receiver protein 4103767 6112647 PputW619_3688 Pseudomonas putida W619 response regulator receiver protein YP_001750539.1 4102073 R 390235 CDS YP_001750540.1 170722852 6112648 complement(4103773..4104078) 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3811 anti-sigma F factor antagonist; anti-sigma-factor antagonist 4104078 6112648 PputW619_3689 Pseudomonas putida W619 anti-sigma-factor antagonist YP_001750540.1 4103773 R 390235 CDS YP_001750541.1 170722853 6112649 complement(4104156..4104608) 1 NC_010501.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 4104608 fliJ 6112649 fliJ Pseudomonas putida W619 flagellar biosynthesis chaperone YP_001750541.1 4104156 R 390235 CDS YP_001750542.1 170722854 6112650 complement(4104615..4105973) 1 NC_010501.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 4105973 fliI 6112650 fliI Pseudomonas putida W619 flagellum-specific ATP synthase YP_001750542.1 4104615 R 390235 CDS YP_001750543.1 170722855 6112651 complement(4105963..4106727) 1 NC_010501.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 4106727 fliH 6112651 fliH Pseudomonas putida W619 flagellar assembly protein H YP_001750543.1 4105963 R 390235 CDS YP_001750544.1 170722856 6112652 complement(4106846..4107865) 1 NC_010501.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 4107865 fliG 6112652 fliG Pseudomonas putida W619 flagellar motor switch protein G YP_001750544.1 4106846 R 390235 CDS YP_001750545.1 170722857 6112653 complement(4107858..4109636) 1 NC_010501.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 4109636 fliF 6112653 fliF Pseudomonas putida W619 flagellar MS-ring protein YP_001750545.1 4107858 R 390235 CDS YP_001750546.1 170722858 6112654 complement(4109652..4109984) 1 NC_010501.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 4109984 fliE 6112654 fliE Pseudomonas putida W619 flagellar hook-basal body protein FliE YP_001750546.1 4109652 R 390235 CDS YP_001750547.1 170722859 6112655 complement(4110127..4111503) 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN3818 response regulator FleR; Fis family two component sigma-54 specific transcriptional regulator 4111503 6112655 PputW619_3696 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001750547.1 4110127 R 390235 CDS YP_001750548.1 170722860 6112656 complement(4111503..4112720) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pen:PSEEN3819 sensory box histidine kinase FleS; PAS/PAC sensor signal transduction histidine kinase 4112720 6112656 PputW619_3697 Pseudomonas putida W619 PAS/PAC sensor signal transduction histidine kinase YP_001750548.1 4111503 R 390235 CDS YP_001750549.1 170722861 6112657 complement(4112973..4114448) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3820 transcriptional regulator FleQ; sigma-54 dependent trancsriptional regulator 4114448 6112657 PputW619_3698 Pseudomonas putida W619 sigma-54 dependent trancsriptional regulator YP_001750549.1 4112973 R 390235 CDS YP_001750550.1 170722862 6112658 complement(4114614..4114910) 1 NC_010501.1 KEGG: pen:PSEEN3822 flagellar protein, FliT; flagellar protein FliT 4114910 6112658 PputW619_3699 Pseudomonas putida W619 flagellar protein FliT YP_001750550.1 4114614 R 390235 CDS YP_001750551.1 170722863 6112659 complement(4114924..4115319) 1 NC_010501.1 flagellin specific chaperone; flagellar protein FliS 4115319 fliS 6112659 fliS Pseudomonas putida W619 flagellar protein FliS YP_001750551.1 4114924 R 390235 CDS YP_001750552.1 170722864 6112660 complement(4115521..4116936) 1 NC_010501.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: pfl:PFL_1631 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 4116936 6112660 PputW619_3701 Pseudomonas putida W619 flagellar hook-associated 2 domain-containing protein YP_001750552.1 4115521 R 390235 CDS YP_001750553.1 170722865 6112661 complement(4117019..4117372) 1 NC_010501.1 PFAM: flagellar protein FlaG protein; KEGG: pfl:PFL_1630 flagellin FlaG; flagellar protein FlaG protein 4117372 6112661 PputW619_3702 Pseudomonas putida W619 flagellar protein FlaG protein YP_001750553.1 4117019 R 390235 CDS YP_001750554.1 170722866 6112662 complement(4117444..4118298) 1 NC_010501.1 structural flagella protein; flagellin 4118298 6112662 PputW619_3703 Pseudomonas putida W619 flagellin YP_001750554.1 4117444 R 390235 CDS YP_001750555.1 170722867 6112663 complement(4118517..4118765) 1 NC_010501.1 KEGG: pfo:Pfl_1526 hypothetical protein; hypothetical protein 4118765 6112663 PputW619_3704 Pseudomonas putida W619 hypothetical protein YP_001750555.1 4118517 R 390235 CDS YP_001750556.1 170722868 6112664 complement(4118762..4120054) 1 NC_010501.1 KEGG: pfo:Pfl_1525 hypothetical protein; hypothetical protein 4120054 6112664 PputW619_3705 Pseudomonas putida W619 hypothetical protein YP_001750556.1 4118762 R 390235 CDS YP_001750557.1 170722869 6112665 complement(4120108..4121055) 1 NC_010501.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: pfl:PFL_1626 3-oxoacyl-(acyl-carrier-protein) synthase III; beta-ketoacyl-acyl-carrier-protein synthase I 4121055 6112665 PputW619_3706 Pseudomonas putida W619 beta-ketoacyl-acyl-carrier-protein synthase I YP_001750557.1 4120108 R 390235 CDS YP_001750558.1 170722870 6112666 complement(4121333..4122385) 1 NC_010501.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: pfo:Pfl_1523 NeuB; N-acylneuraminate-9-phosphate synthase 4122385 6112666 PputW619_3707 Pseudomonas putida W619 N-acylneuraminate-9-phosphate synthase YP_001750558.1 4121333 R 390235 CDS YP_001750559.1 170722871 6112667 complement(4122389..4123864) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_1624 FlaR protein (FlaR); N-acetyltransferase GCN5 4123864 6112667 PputW619_3708 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001750559.1 4122389 R 390235 CDS YP_001750560.1 170722872 6112668 complement(4123861..4124586) 1 NC_010501.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: pfl:PFL_1623 acylneuraminate cytidylyltransferase, putative; N-acylneuraminate cytidylyltransferase 4124586 6112668 PputW619_3709 Pseudomonas putida W619 N-acylneuraminate cytidylyltransferase YP_001750560.1 4123861 R 390235 CDS YP_001750561.1 170722873 6112669 complement(4124579..4125760) 1 NC_010501.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pfo:Pfl_1519 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 4125760 6112669 PputW619_3710 Pseudomonas putida W619 DegT/DnrJ/EryC1/StrS aminotransferase YP_001750561.1 4124579 R 390235 CDS YP_001750562.1 170722874 6112670 complement(4125757..4126758) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_1518 NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD 4126758 6112670 PputW619_3711 Pseudomonas putida W619 polysaccharide biosynthesis protein CapD YP_001750562.1 4125757 R 390235 CDS YP_001750563.1 170722875 6112671 complement(4126903..4129800) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pfo:Pfl_1517 glycosyl transferase, family 2; glycosyl transferase family protein 4129800 6112671 PputW619_3712 Pseudomonas putida W619 glycosyl transferase family protein YP_001750563.1 4126903 R 390235 CDS YP_001750564.1 170722876 6112672 complement(4129855..4130589) 1 NC_010501.1 PFAM: Cephalosporin hydroxylase; KEGG: pfo:Pfl_1516 cephalosporin hydroxylase; cephalosporin hydroxylase 4130589 6112672 PputW619_3713 Pseudomonas putida W619 cephalosporin hydroxylase YP_001750564.1 4129855 R 390235 CDS YP_001750565.1 170722877 6112673 complement(4130596..4131681) 1 NC_010501.1 PFAM: Methyltransferase type 11; KEGG: sat:SYN_02653 methyltransferase; type 11 methyltransferase 4131681 6112673 PputW619_3714 Pseudomonas putida W619 type 11 methyltransferase YP_001750565.1 4130596 R 390235 CDS YP_001750566.1 170722878 6112674 complement(4131671..4132528) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dol:Dole_1963 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4132528 6112674 PputW619_3715 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001750566.1 4131671 R 390235 CDS YP_001750567.1 170722879 6112675 complement(4132534..4133757) 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: pfo:Pfl_1513 hypothetical protein; C-methyltransferase 4133757 6112675 PputW619_3716 Pseudomonas putida W619 C-methyltransferase YP_001750567.1 4132534 R 390235 CDS YP_001750568.1 170722880 6112676 complement(4133754..4134314) 1 NC_010501.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: pfo:Pfl_1512 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase 4134314 6112676 PputW619_3717 Pseudomonas putida W619 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001750568.1 4133754 R 390235 CDS YP_001750569.1 170722881 6112677 complement(4134311..4135393) 1 NC_010501.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: pfo:Pfl_1511 NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase 4135393 6112677 PputW619_3718 Pseudomonas putida W619 CDP-glucose 4,6-dehydratase YP_001750569.1 4134311 R 390235 CDS YP_001750570.1 170722882 6112678 complement(4135375..4136148) 1 NC_010501.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfo:Pfl_1510 nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 4136148 6112678 PputW619_3719 Pseudomonas putida W619 glucose-1-phosphate cytidylyltransferase YP_001750570.1 4135375 R 390235 CDS YP_001750571.1 170722883 6112679 complement(4136274..4139855) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: pfo:Pfl_1508 glycosyl transferase, family 2; glycosyl transferase family protein 4139855 6112679 PputW619_3720 Pseudomonas putida W619 glycosyl transferase family protein YP_001750571.1 4136274 R 390235 CDS YP_001750572.1 170722884 6112680 complement(4139974..4141548) 1 NC_010501.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 4141548 flgL 6112680 flgL Pseudomonas putida W619 flagellar hook-associated protein FlgL YP_001750572.1 4139974 R 390235 CDS YP_001750573.1 170722885 6112681 complement(4141562..4143610) 1 NC_010501.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 4143610 flgK 6112681 flgK Pseudomonas putida W619 flagellar hook-associated protein FlgK YP_001750573.1 4141562 R 390235 CDS YP_001750574.1 170722886 6112682 complement(4143623..4144789) 1 NC_010501.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 4144789 flgJ 6112682 flgJ Pseudomonas putida W619 flagellar rod assembly protein/muramidase FlgJ YP_001750574.1 4143623 R 390235 CDS YP_001750575.1 170722887 6112683 complement(4144801..4145910) 1 NC_010501.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4145910 flgI 6112683 flgI Pseudomonas putida W619 flagellar basal body P-ring protein YP_001750575.1 4144801 R 390235 CDS YP_001750576.1 170722888 6112684 complement(4145923..4146618) 1 NC_010501.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 4146618 flgH 6112684 flgH Pseudomonas putida W619 flagellar basal body L-ring protein YP_001750576.1 4145923 R 390235 CDS YP_001750577.1 170722889 6112685 complement(4146653..4147438) 1 NC_010501.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 4147438 flgG 6112685 flgG Pseudomonas putida W619 flagellar basal body rod protein FlgG YP_001750577.1 4146653 R 390235 CDS YP_001750578.1 170722890 6112686 complement(4147486..4148232) 1 NC_010501.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 4148232 flgF 6112686 flgF Pseudomonas putida W619 flagellar basal body rod protein FlgF YP_001750578.1 4147486 R 390235 CDS YP_001750579.1 170722891 6112687 complement(4148560..4148745) 1 NC_010501.1 KEGG: pen:PSEEN3838 hypothetical protein; hypothetical protein 4148745 6112687 PputW619_3728 Pseudomonas putida W619 hypothetical protein YP_001750579.1 4148560 R 390235 CDS YP_001750580.1 170722892 6112688 complement(4148819..4150174) 1 NC_010501.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 4150174 flgE 6112688 flgE Pseudomonas putida W619 flagellar hook protein FlgE YP_001750580.1 4148819 R 390235 CDS YP_001750581.1 170722893 6112689 complement(4150205..4150912) 1 NC_010501.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 4150912 flgD 6112689 flgD Pseudomonas putida W619 flagellar basal body rod modification protein YP_001750581.1 4150205 R 390235 CDS YP_001750582.1 170722894 6112690 complement(4150928..4151371) 1 NC_010501.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 4151371 flgC 6112690 flgC Pseudomonas putida W619 flagellar basal body rod protein FlgC YP_001750582.1 4150928 R 390235 CDS YP_001750583.1 170722895 6112691 complement(4151374..4151784) 1 NC_010501.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 4151784 flgB 6112691 flgB Pseudomonas putida W619 flagellar basal body rod protein FlgB YP_001750583.1 4151374 R 390235 CDS YP_001750584.1 170722896 6112692 complement(4152108..4152935) 1 NC_010501.1 PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3844 chemotaxis protein methyltransferase CheR; CheR-type MCP methyltransferase 4152935 6112692 PputW619_3733 Pseudomonas putida W619 CheR-type MCP methyltransferase YP_001750584.1 4152108 R 390235 CDS YP_001750585.1 170722897 6112693 complement(4152987..4153916) 1 NC_010501.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3845 chemotaxis protein CheV; response regulator receiver modulated CheW protein 4153916 6112693 PputW619_3734 Pseudomonas putida W619 response regulator receiver modulated CheW protein YP_001750585.1 4152987 R 390235 CDS YP_001750586.1 170722898 6112694 4153995..4154747 1 NC_010501.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4154747 flgA 6112694 flgA Pseudomonas putida W619 flagellar basal body P-ring biosynthesis protein FlgA YP_001750586.1 4153995 D 390235 CDS YP_001750587.1 170722899 6112695 4154898..4155209 1 NC_010501.1 PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pen:PSEEN3847 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 4155209 6112695 PputW619_3736 Pseudomonas putida W619 anti-sigma-28 factor FlgM YP_001750587.1 4154898 D 390235 CDS YP_001750588.1 170722900 6112696 4155259..4155726 1 NC_010501.1 PFAM: FlgN family protein; KEGG: pen:PSEEN3848 flagella synthesis protein FlgN; FlgN family protein 4155726 6112696 PputW619_3737 Pseudomonas putida W619 FlgN family protein YP_001750588.1 4155259 D 390235 CDS YP_001750589.1 170722901 6112697 4155807..4156550 1 NC_010501.1 PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3849 hypothetical protein; type IV pilus assembly PilZ 4156550 6112697 PputW619_3738 Pseudomonas putida W619 type IV pilus assembly PilZ YP_001750589.1 4155807 D 390235 CDS YP_001750590.1 170722902 6112698 complement(4156814..4158145) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3850 major facilitator family transporter; major facilitator transporter 4158145 6112698 PputW619_3739 Pseudomonas putida W619 major facilitator transporter YP_001750590.1 4156814 R 390235 CDS YP_001750591.1 170722903 6112699 complement(4158276..4159619) 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3851 glutamine synthetase; glutamate--putrescine ligase 4159619 6112699 PputW619_3740 Pseudomonas putida W619 glutamate--putrescine ligase YP_001750591.1 4158276 R 390235 CDS YP_001750592.1 170722904 6112700 complement(4159717..4160202) 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3852 transcriptional regulator BkdR; AsnC family transcriptional regulator 4160202 6112700 PputW619_3741 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001750592.1 4159717 R 390235 CDS YP_001750593.1 170722905 6112701 4160400..4161632 1 NC_010501.1 PFAM: dehydrogenase E1 component; KEGG: pen:PSEEN3853 2-oxoisovalerate dehydrogenase, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 4161632 6112701 PputW619_3742 Pseudomonas putida W619 3-methyl-2-oxobutanoate dehydrogenase YP_001750593.1 4160400 D 390235 CDS YP_001750594.1 170722906 6112702 4161634..4162692 1 NC_010501.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: pen:PSEEN3854 2-oxoisovalerate dehydrogenase, beta subunit; transketolase central region 4162692 6112702 PputW619_3743 Pseudomonas putida W619 transketolase central region YP_001750594.1 4161634 D 390235 CDS YP_001750595.1 170722907 6112703 4162693..4163955 1 NC_010501.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pen:PSEEN3855 2-oxoisovalerate dehydrogenase, lipoamide acyltransferase component; branched-chain alpha-keto acid dehydrogenase subunit E2 4163955 6112703 PputW619_3744 Pseudomonas putida W619 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001750595.1 4162693 D 390235 CDS YP_001750596.1 170722908 6112704 4163958..4165337 1 NC_010501.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4165337 6112704 PputW619_3745 Pseudomonas putida W619 dihydrolipoamide dehydrogenase YP_001750596.1 4163958 D 390235 CDS YP_001750597.1 170722909 6112705 complement(4165442..4166164) 1 NC_010501.1 KEGG: nca:Noca_4223 dTDP-6-deoxy-L-hexose 3-O-methyltransferase; dTDP-6-deoxy-L-hexose 3-O-methyltransferase 4166164 6112705 PputW619_3746 Pseudomonas putida W619 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_001750597.1 4165442 R 390235 CDS YP_001750598.1 170722910 6112706 complement(4166161..4167027) 1 NC_010501.1 KEGG: fal:FRAAL6244 hypothetical protein; hypothetical protein 4167027 6112706 PputW619_3747 Pseudomonas putida W619 hypothetical protein YP_001750598.1 4166161 R 390235 CDS YP_001750599.1 170722911 6112707 complement(4167252..4168100) 1 NC_010501.1 hypothetical protein 4168100 6112707 PputW619_3748 Pseudomonas putida W619 hypothetical protein YP_001750599.1 4167252 R 390235 CDS YP_001750600.1 170722912 6112708 4168217..4168873 1 NC_010501.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: fjo:Fjoh_0320 acyl-(acyl carrier protein)-like protein; hexapaptide repeat-containing transferase 4168873 6112708 PputW619_3749 Pseudomonas putida W619 hexapaptide repeat-containing transferase YP_001750600.1 4168217 D 390235 CDS YP_001750601.1 170722913 6112709 4168881..4169804 1 NC_010501.1 KEGG: bte:BTH_I3215 hypothetical protein; hypothetical protein 4169804 6112709 PputW619_3750 Pseudomonas putida W619 hypothetical protein YP_001750601.1 4168881 D 390235 CDS YP_001750602.1 170722914 6112710 4169797..4170576 1 NC_010501.1 KEGG: saq:Sare_2046 conserved hypothetical protein; hypothetical protein 4170576 6112710 PputW619_3751 Pseudomonas putida W619 hypothetical protein YP_001750602.1 4169797 D 390235 CDS YP_001750603.1 170722915 6112711 4170584..4171363 1 NC_010501.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rme:Rmet_5239 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 4171363 6112711 PputW619_3752 Pseudomonas putida W619 phytanoyl-CoA dioxygenase YP_001750603.1 4170584 D 390235 CDS YP_001750604.1 170722916 6112712 4171366..4172094 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_5240 methyltransferase type 12; type 12 methyltransferase 4172094 6112712 PputW619_3753 Pseudomonas putida W619 type 12 methyltransferase YP_001750604.1 4171366 D 390235 CDS YP_001750605.1 170722917 6112713 complement(4172098..4172799) 1 NC_010501.1 PFAM: WbqC-like family protein; KEGG: bte:BTH_I3212 WbnG; WbqC-like family protein 4172799 6112713 PputW619_3754 Pseudomonas putida W619 WbqC-like family protein YP_001750605.1 4172098 R 390235 CDS YP_001750606.1 170722918 6112714 complement(4172796..4173917) 1 NC_010501.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A0099 putative transferase; DegT/DnrJ/EryC1/StrS aminotransferase 4173917 6112714 PputW619_3755 Pseudomonas putida W619 DegT/DnrJ/EryC1/StrS aminotransferase YP_001750606.1 4172796 R 390235 CDS YP_001750607.1 170722919 6112715 complement(4173988..4175169) 1 NC_010501.1 PFAM: glycosyl transferase family 2; KEGG: xac:XAC1957 O-antigen biosynthesis protein; glycosyl transferase family protein 4175169 6112715 PputW619_3756 Pseudomonas putida W619 glycosyl transferase family protein YP_001750607.1 4173988 R 390235 CDS YP_001750608.1 170722920 6112716 4175536..4176507 1 NC_010501.1 PFAM: Endonuclease I; KEGG: net:Neut_2614 deoxyribonuclease I; deoxyribonuclease I 4176507 6112716 PputW619_3757 Pseudomonas putida W619 deoxyribonuclease I YP_001750608.1 4175536 D 390235 CDS YP_001750609.1 170722921 6112718 complement(4176720..4177307) 1 NC_010501.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: pen:PSEEN3864 ATP-binding protein PhnN; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 4177307 6112718 PputW619_3758 Pseudomonas putida W619 phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_001750609.1 4176720 R 390235 CDS YP_001750610.1 170722922 6112719 4177652..4177978 1 NC_010501.1 PFAM: Arc domain protein DNA binding domain protein; KEGG: pen:PSEEN3868 alginate biosynthesis transcriptional activator; Arc domain-containing protein 4177978 6112719 PputW619_3759 Pseudomonas putida W619 Arc domain-containing protein YP_001750610.1 4177652 D 390235 CDS YP_001750611.1 170722923 6112720 complement(4178073..4179515) 1 NC_010501.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pen:PSEEN3870 magnesium transporter; magnesium transporter 4179515 6112720 PputW619_3760 Pseudomonas putida W619 magnesium transporter YP_001750611.1 4178073 R 390235 CDS YP_001750612.1 170722924 6112725 complement(4180535..4180723) 1 NC_010501.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 4180723 6112725 PputW619_3761 Pseudomonas putida W619 carbon storage regulator YP_001750612.1 4180535 R 390235 CDS YP_001750613.1 170722925 6112726 complement(4180891..4182126) 1 NC_010501.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 4182126 6112726 PputW619_3762 Pseudomonas putida W619 aspartate kinase YP_001750613.1 4180891 R 390235 CDS YP_001750614.1 170722926 6112727 complement(4182212..4184905) 1 NC_010501.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 4184905 alaS 6112727 alaS Pseudomonas putida W619 alanyl-tRNA synthetase YP_001750614.1 4182212 R 390235 CDS YP_001750615.1 170722927 6112728 complement(4185174..4186181) 1 NC_010501.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 4186181 6112728 PputW619_3764 Pseudomonas putida W619 succinylglutamate desuccinylase YP_001750615.1 4185174 R 390235 CDS YP_001750616.1 170722928 6112729 complement(4186192..4186482) 1 NC_010501.1 KEGG: pen:PSEEN3877 hypothetical protein; hypothetical protein 4186482 6112729 PputW619_3765 Pseudomonas putida W619 hypothetical protein YP_001750616.1 4186192 R 390235 CDS YP_001750617.1 170722929 6112730 complement(4186497..4187846) 1 NC_010501.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 4187846 6112730 PputW619_3766 Pseudomonas putida W619 succinylarginine dihydrolase YP_001750617.1 4186497 R 390235 CDS YP_001750618.1 170722930 6112731 complement(4187870..4189333) 1 NC_010501.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 4189333 astD 6112731 astD Pseudomonas putida W619 succinylglutamic semialdehyde dehydrogenase YP_001750618.1 4187870 R 390235 CDS YP_001750619.1 170722931 6112732 complement(4189334..4190362) 1 NC_010501.1 KEGG: pen:PSEEN3880 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 4190362 6112732 PputW619_3768 Pseudomonas putida W619 arginine N-succinyltransferase YP_001750619.1 4189334 R 390235 CDS YP_001750620.1 170722932 6112733 complement(4190417..4191436) 1 NC_010501.1 KEGG: pen:PSEEN3881 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit; arginine/ornithine succinyltransferase subunit alpha 4191436 6112733 PputW619_3769 Pseudomonas putida W619 arginine/ornithine succinyltransferase subunit alpha YP_001750620.1 4190417 R 390235 CDS YP_001750621.1 170722933 6112734 complement(4191577..4192797) 1 NC_010501.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 4192797 argD 6112734 argD Pseudomonas putida W619 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001750621.1 4191577 R 390235 CDS YP_001750622.1 170722934 6112735 complement(4193092..4194072) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3883 transcriptional regulator ArgR, AraC family; AraC family transcriptional regulator 4194072 6112735 PputW619_3771 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750622.1 4193092 R 390235 CDS YP_001750623.1 170722935 6112736 complement(4194173..4194937) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3884 arginine/ornithine transport ATP-binding protein AotP; ABC transporter-like protein 4194937 6112736 PputW619_3772 Pseudomonas putida W619 ABC transporter-like protein YP_001750623.1 4194173 R 390235 CDS YP_001750624.1 170722936 6112737 complement(4194960..4195658) 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3885 arginine/ornithine transport membrane protein AotM; polar amino acid ABC transporter inner membrane subunit 4195658 6112737 PputW619_3773 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001750624.1 4194960 R 390235 CDS YP_001750625.1 170722937 6112738 complement(4195655..4196344) 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3886 arginine/ornithine transport protein AotQ (membrane); polar amino acid ABC transporter inner membrane subunit 4196344 6112738 PputW619_3774 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001750625.1 4195655 R 390235 CDS YP_001750626.1 170722938 6112739 complement(4196433..4197218) 1 NC_010501.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3887 arginine/ornithine periplasmic-binding protein AotJ; cationic amino acid ABC transporter periplasmic binding protein 4197218 6112739 PputW619_3775 Pseudomonas putida W619 cationic amino acid ABC transporter periplasmic binding protein YP_001750626.1 4196433 R 390235 CDS YP_001750627.1 170722939 6112740 complement(4197725..4199686) 1 NC_010501.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4199686 6112740 PputW619_3776 Pseudomonas putida W619 acetyl-CoA synthetase YP_001750627.1 4197725 R 390235 CDS YP_001750628.1 170722940 6112741 4200114..4200368 1 NC_010501.1 KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein 4200368 6112741 PputW619_3777 Pseudomonas putida W619 hypothetical protein YP_001750628.1 4200114 D 390235 CDS YP_001750629.1 170722941 6112742 complement(4200450..4202009) 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN3891 phenylalanine hydroxylase gene cluster transcription activator; transcriptional regulator TyrR 4202009 6112742 PputW619_3778 Pseudomonas putida W619 transcriptional regulator TyrR YP_001750629.1 4200450 R 390235 CDS YP_001750630.1 170722942 6112743 4202266..4203054 1 NC_010501.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 4203054 phhA 6112743 phhA Pseudomonas putida W619 phenylalanine 4-monooxygenase YP_001750630.1 4202266 D 390235 CDS YP_001750631.1 170722943 6112744 4203094..4203450 1 NC_010501.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 4203450 phhB 6112744 phhB Pseudomonas putida W619 pterin-4-alpha-carbinolamine dehydratase YP_001750631.1 4203094 D 390235 CDS YP_001750632.1 170722944 6112745 4203885..4205072 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3896 transport protein (MFS family); major facilitator superfamily transporter 4205072 6112745 PputW619_3781 Pseudomonas putida W619 major facilitator superfamily transporter YP_001750632.1 4203885 D 390235 CDS YP_001750633.1 170722945 6112746 complement(4205157..4208174) 1 NC_010501.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN3897 oxidase, FAD-binding; FAD linked oxidase domain-containing protein 4208174 6112746 PputW619_3782 Pseudomonas putida W619 FAD linked oxidase domain-containing protein YP_001750633.1 4205157 R 390235 CDS YP_001750634.1 170722946 6112747 4208327..4209211 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3898 transcriptional regulator, LysR family; LysR family transcriptional regulator 4209211 6112747 PputW619_3783 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750634.1 4208327 D 390235 CDS YP_001750635.1 170722947 6112748 complement(4209312..4210733) 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3899 aromatic amino acid transporter (APC family); amino acid permease-associated protein 4210733 6112748 PputW619_3784 Pseudomonas putida W619 amino acid permease-associated protein YP_001750635.1 4209312 R 390235 CDS YP_001750636.1 170722948 6112749 complement(4211369..4212433) 1 NC_010501.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN3900 ribosomal large subunit pseudouridine synthase B; RNA-binding S4 domain-containing protein 4212433 6112749 PputW619_3785 Pseudomonas putida W619 RNA-binding S4 domain-containing protein YP_001750636.1 4211369 R 390235 CDS YP_001750637.1 170722949 6112750 complement(4212656..4213435) 1 NC_010501.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pen:PSEEN3901 hypothetical protein; segregation and condensation protein B 4213435 6112750 PputW619_3786 Pseudomonas putida W619 segregation and condensation protein B YP_001750637.1 4212656 R 390235 CDS YP_001750638.1 170722950 6112751 complement(4213422..4214267) 1 NC_010501.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pen:PSEEN3902 hypothetical protein; chromosome segregation and condensation protein ScpA 4214267 6112751 PputW619_3787 Pseudomonas putida W619 chromosome segregation and condensation protein ScpA YP_001750638.1 4213422 R 390235 CDS YP_001750639.1 170722951 6112752 complement(4214273..4214938) 1 NC_010501.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN3903 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 4214938 6112752 PputW619_3788 Pseudomonas putida W619 Sua5/YciO/YrdC/YwlC family protein YP_001750639.1 4214273 R 390235 CDS YP_001750640.1 170722952 6112753 complement(4214916..4215776) 1 NC_010501.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pen:PSEEN3904 phosphoesterase (PHP family); phosphotransferase domain-containing protein 4215776 6112753 PputW619_3789 Pseudomonas putida W619 phosphotransferase domain-containing protein YP_001750640.1 4214916 R 390235 CDS YP_001750641.1 170722953 6112754 4215805..4216437 1 NC_010501.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 4216437 6112754 PputW619_3790 Pseudomonas putida W619 intracellular septation protein A YP_001750641.1 4215805 D 390235 CDS YP_001750642.1 170722954 6112755 4216439..4216738 1 NC_010501.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 4216738 6112755 PputW619_3791 Pseudomonas putida W619 YciI-like protein YP_001750642.1 4216439 D 390235 CDS YP_001750643.1 170722955 6112756 4216817..4217494 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3908 two-component response regulator; two component transcriptional regulator 4217494 6112756 PputW619_3792 Pseudomonas putida W619 two component transcriptional regulator YP_001750643.1 4216817 D 390235 CDS YP_001750644.1 170722956 6112757 4217664..4218080 1 NC_010501.1 KEGG: pen:PSEEN3909 hypothetical protein; hypothetical protein 4218080 6112757 PputW619_3793 Pseudomonas putida W619 hypothetical protein YP_001750644.1 4217664 D 390235 CDS YP_001750645.1 170722957 6112758 4218139..4219479 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3910 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4219479 6112758 PputW619_3794 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001750645.1 4218139 D 390235 CDS YP_001750646.1 170722958 6112759 complement(4219611..4220168) 1 NC_010501.1 PFAM: nitroreductase; KEGG: pen:PSEEN3911 nitroreductase; nitroreductase 4220168 6112759 PputW619_3795 Pseudomonas putida W619 nitroreductase YP_001750646.1 4219611 R 390235 CDS YP_001750647.1 170722959 6112760 4220350..4221804 1 NC_010501.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: pen:PSEEN3912 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 4221804 6112760 PputW619_3796 Pseudomonas putida W619 TrkH family potassium uptake protein YP_001750647.1 4220350 D 390235 CDS YP_001750648.1 170722960 6112761 complement(4221761..4222822) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3913 transcriptional regulator, AraC family; AraC family transcriptional regulator 4222822 6112761 PputW619_3797 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750648.1 4221761 R 390235 CDS YP_001750649.1 170722961 6112762 4222978..4223289 1 NC_010501.1 KEGG: pen:PSEEN3914 hypothetical protein; hypothetical protein 4223289 6112762 PputW619_3798 Pseudomonas putida W619 hypothetical protein YP_001750649.1 4222978 D 390235 CDS YP_001750650.1 170722962 6112763 complement(4223305..4224117) 1 NC_010501.1 PFAM: metallophosphoesterase; KEGG: pen:PSEEN3916 metallo-dependent phosphoesterase; metallophosphoesterase 4224117 6112763 PputW619_3799 Pseudomonas putida W619 metallophosphoesterase YP_001750650.1 4223305 R 390235 CDS YP_001750651.1 170722963 6112764 4224244..4225017 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3917 transcriptional regulator, AraC family; AraC family transcriptional regulator 4225017 6112764 PputW619_3800 Pseudomonas putida W619 AraC family transcriptional regulator YP_001750651.1 4224244 D 390235 CDS YP_001750652.1 170722964 6112765 4225128..4226018 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: pen:PSEEN3918 hypothetical protein; hypothetical protein 4226018 6112765 PputW619_3801 Pseudomonas putida W619 hypothetical protein YP_001750652.1 4225128 D 390235 CDS YP_001750653.1 170722965 6112766 complement(4226019..4226300) 1 NC_010501.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: pen:PSEEN3919 hypothetical protein; putative selenoprotein 4226300 6112766 PputW619_3802 Pseudomonas putida W619 putative selenoprotein YP_001750653.1 4226019 R 390235 CDS YP_001750654.1 170722966 6112767 4226367..4228550 1 NC_010501.1 PFAM: Patatin; surface antigen variable number repeat protein; KEGG: pen:PSEEN3920 hypothetical protein; patatin 4228550 6112767 PputW619_3803 Pseudomonas putida W619 patatin YP_001750654.1 4226367 D 390235 CDS YP_001750655.1 170722967 6112768 complement(4228572..4229009) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN3921 transcriptional regulator, MarR family; MarR family transcriptional regulator 4229009 6112768 PputW619_3804 Pseudomonas putida W619 MarR family transcriptional regulator YP_001750655.1 4228572 R 390235 CDS YP_001750656.1 170722968 6112769 complement(4229151..4231295) 1 NC_010501.1 KEGG: pen:PSEEN3922 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 4231295 6112769 PputW619_3805 Pseudomonas putida W619 ATP-dependent DNA helicase RecQ YP_001750656.1 4229151 R 390235 CDS YP_001750657.1 170722969 6112770 4231540..4232127 1 NC_010501.1 TIGRFAM: yecA family protein; KEGG: pen:PSEEN3923 hypothetical protein; yecA family protein 4232127 6112770 PputW619_3806 Pseudomonas putida W619 yecA family protein YP_001750657.1 4231540 D 390235 CDS YP_001750658.1 170722970 6112771 4232135..4232500 1 NC_010501.1 PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN3924 hypothetical protein; hypothetical protein 4232500 6112771 PputW619_3807 Pseudomonas putida W619 hypothetical protein YP_001750658.1 4232135 D 390235 CDS YP_001750659.1 170722971 6112772 complement(4232583..4240157) 1 NC_010501.1 TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: pfo:Pfl_1463 VCBS; outer membrane adhesin-like protein 4240157 6112772 PputW619_3808 Pseudomonas putida W619 outer membrane adhesin-like protein YP_001750659.1 4232583 R 390235 CDS YP_001750660.1 170722972 6112773 4240624..4241997 1 NC_010501.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3927 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 4241997 6112773 PputW619_3809 Pseudomonas putida W619 TolC family type I secretion outer membrane protein YP_001750660.1 4240624 D 390235 CDS YP_001750661.1 170722973 6112774 4242076..4244211 1 NC_010501.1 KEGG: pen:PSEEN3928 multidrug/toxin efflux protein, ATP binding and membrane protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 4244211 6112774 PputW619_3810 Pseudomonas putida W619 type I secretion system ATPase YP_001750661.1 4242076 D 390235 CDS YP_001750662.1 170722974 6112775 4244221..4245576 1 NC_010501.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3929 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 4245576 6112775 PputW619_3811 Pseudomonas putida W619 HlyD family type I secretion membrane fusion protein YP_001750662.1 4244221 D 390235 CDS YP_001750663.1 170722975 6112776 complement(4245764..4246363) 1 NC_010501.1 PFAM: DTW domain containing protein; KEGG: pen:PSEEN3930 hypothetical protein; DTW domain-containing protein 4246363 6112776 PputW619_3812 Pseudomonas putida W619 DTW domain-containing protein YP_001750663.1 4245764 R 390235 CDS YP_001750664.1 170722976 6112777 complement(4246439..4248004) 1 NC_010501.1 KEGG: pen:PSEEN3931 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 4248004 6112777 PputW619_3813 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001750664.1 4246439 R 390235 CDS YP_001750665.1 170722977 6112778 complement(4248142..4249035) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3932 transcriptional regulator, LysR family; LysR family transcriptional regulator 4249035 6112778 PputW619_3814 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750665.1 4248142 R 390235 CDS YP_001750666.1 170722978 6112779 4249260..4250210 1 NC_010501.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pen:PSEEN3933 agmatinase; agmatinase 4250210 6112779 PputW619_3815 Pseudomonas putida W619 agmatinase YP_001750666.1 4249260 D 390235 CDS YP_001750667.1 170722979 6112780 4250344..4251723 1 NC_010501.1 PFAM: Na+/solute symporter; KEGG: pen:PSEEN3934 sodium-solute symporter; Na+/solute symporter 4251723 6112780 PputW619_3816 Pseudomonas putida W619 Na+/solute symporter YP_001750667.1 4250344 D 390235 CDS YP_001750668.1 170722980 6112781 complement(4251873..4252001) 1 NC_010501.1 KEGG: pen:PSEEN3935 hypothetical protein; hypothetical protein 4252001 6112781 PputW619_3817 Pseudomonas putida W619 hypothetical protein YP_001750668.1 4251873 R 390235 CDS YP_001750669.1 170722981 6112782 complement(4252126..4253019) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3936 transcriptional regulator, LysR family; LysR family transcriptional regulator 4253019 6112782 PputW619_3818 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750669.1 4252126 R 390235 CDS YP_001750670.1 170722982 6112783 4253126..4254295 1 NC_010501.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3937 hypothetical protein; hypothetical protein 4254295 6112783 PputW619_3819 Pseudomonas putida W619 hypothetical protein YP_001750670.1 4253126 D 390235 CDS YP_001750671.1 170722983 6112784 complement(4254425..4255351) 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3940 hypothetical protein; hypothetical protein 4255351 6112784 PputW619_3820 Pseudomonas putida W619 hypothetical protein YP_001750671.1 4254425 R 390235 CDS YP_001750672.1 170722984 6112785 complement(4255457..4255852) 1 NC_010501.1 KEGG: pfl:PFL_1560 hypothetical protein; hypothetical protein 4255852 6112785 PputW619_3821 Pseudomonas putida W619 hypothetical protein YP_001750672.1 4255457 R 390235 CDS YP_001750673.1 170722985 6112786 complement(4255930..4256184) 1 NC_010501.1 KEGG: pfl:PFL_0170 hypothetical protein; hypothetical protein 4256184 6112786 PputW619_3822 Pseudomonas putida W619 hypothetical protein YP_001750673.1 4255930 R 390235 CDS YP_001750674.1 170722986 6112787 complement(4256162..4256440) 1 NC_010501.1 PFAM: protein of unknown function DUF497; KEGG: pen:PSEEN3950 hypothetical protein; hypothetical protein 4256440 6112787 PputW619_3823 Pseudomonas putida W619 hypothetical protein YP_001750674.1 4256162 R 390235 CDS YP_001750675.1 170722987 6112788 complement(4256612..4257415) 1 NC_010501.1 PFAM: regulatory protein LuxR; KEGG: pde:Pden_3582 response regulator receiver protein; LuxR family transcriptional regulator 4257415 6112788 PputW619_3824 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001750675.1 4256612 R 390235 CDS YP_001750676.1 170722988 6112790 4258717..4258989 1 NC_010501.1 KEGG: pen:PSEEN3948 hypothetical protein; hypothetical protein 4258989 6112790 PputW619_3826 Pseudomonas putida W619 hypothetical protein YP_001750676.1 4258717 D 390235 CDS YP_001750677.1 170722989 6112791 complement(4259109..4260467) 1 NC_010501.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN3951 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 4260467 6112791 PputW619_3827 Pseudomonas putida W619 DEAD/DEAH box helicase YP_001750677.1 4259109 R 390235 CDS YP_001750678.1 170722990 6112792 4260573..4261874 1 NC_010501.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3952 transporter with mechanosensitive ion channel; mechanosensitive ion channel MscS 4261874 6112792 PputW619_3828 Pseudomonas putida W619 mechanosensitive ion channel MscS YP_001750678.1 4260573 D 390235 CDS YP_001750679.1 170722991 6112793 complement(4262131..4263066) 1 NC_010501.1 PFAM: Auxin Efflux Carrier; KEGG: pmy:Pmen_0140 auxin efflux carrier; auxin efflux carrier 4263066 6112793 PputW619_3829 Pseudomonas putida W619 auxin efflux carrier YP_001750679.1 4262131 R 390235 CDS YP_001750680.1 170722992 6112794 complement(4263068..4263943) 1 NC_010501.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3958 transport protein; carboxylate/amino acid/amine transporter 4263943 6112794 PputW619_3830 Pseudomonas putida W619 carboxylate/amino acid/amine transporter YP_001750680.1 4263068 R 390235 CDS YP_001750681.1 170722993 6112795 complement(4264132..4264731) 1 NC_010501.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN3959 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase 4264731 6112795 PputW619_3831 Pseudomonas putida W619 NAD(P)H dehydrogenase YP_001750681.1 4264132 R 390235 CDS YP_001750682.1 170722994 6112796 complement(4264841..4265155) 1 NC_010501.1 KEGG: pen:PSEEN3960 hypothetical protein; hypothetical protein 4265155 6112796 PputW619_3832 Pseudomonas putida W619 hypothetical protein YP_001750682.1 4264841 R 390235 CDS YP_001750683.1 170722995 6112797 4265204..4266127 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3961 transcriptional regulator, LysR family; LysR family transcriptional regulator 4266127 6112797 PputW619_3833 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750683.1 4265204 D 390235 CDS YP_001750684.1 170722996 6112798 4266141..4266953 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3962 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4266953 6112798 PputW619_3834 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001750684.1 4266141 D 390235 CDS YP_001750685.1 170722997 6112799 4266947..4267504 1 NC_010501.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN3963 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 4267504 6112799 PputW619_3835 Pseudomonas putida W619 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001750685.1 4266947 D 390235 CDS YP_001750686.1 170722998 6112800 4267568..4269400 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3964 ABC transporter, ATP-binding protein/permease protein; ABC transporter-like protein 4269400 6112800 PputW619_3836 Pseudomonas putida W619 ABC transporter-like protein YP_001750686.1 4267568 D 390235 CDS YP_001750687.1 170722999 6112801 complement(4269414..4270541) 1 NC_010501.1 PFAM: protein of unknown function DUF482; KEGG: pen:PSEEN3965 hypothetical protein; hypothetical protein 4270541 6112801 PputW619_3837 Pseudomonas putida W619 hypothetical protein YP_001750687.1 4269414 R 390235 CDS YP_001750688.1 170723000 6112802 4270803..4272047 1 NC_010501.1 KEGG: pen:PSEEN3966 hypothetical protein; hypothetical protein 4272047 6112802 PputW619_3838 Pseudomonas putida W619 hypothetical protein YP_001750688.1 4270803 D 390235 CDS YP_001750689.1 170723001 6112803 complement(4272176..4273297) 1 NC_010501.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 4273297 6112803 PputW619_3839 Pseudomonas putida W619 3-oxoacyl-ACP synthase YP_001750689.1 4272176 R 390235 CDS YP_001750690.1 170723002 6112804 complement(4273443..4277348) 1 NC_010501.1 KEGG: pen:PSEEN3969 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA 4277348 6112804 PputW619_3840 Pseudomonas putida W619 ATP-dependent helicase HrpA YP_001750690.1 4273443 R 390235 CDS YP_001750691.1 170723003 6112805 4277535..4277726 1 NC_010501.1 KEGG: pen:PSEEN3970 hypothetical protein; hypothetical protein 4277726 6112805 PputW619_3841 Pseudomonas putida W619 hypothetical protein YP_001750691.1 4277535 D 390235 CDS YP_001750692.1 170723004 6112806 4277781..4279145 1 NC_010501.1 PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3971 glutamine synthetase; glutamate--putrescine ligase 4279145 6112806 PputW619_3842 Pseudomonas putida W619 glutamate--putrescine ligase YP_001750692.1 4277781 D 390235 CDS YP_001750693.1 170723005 6112807 4279176..4280483 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3972 oxidoreductase; FAD dependent oxidoreductase 4280483 6112807 PputW619_3843 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001750693.1 4279176 D 390235 CDS YP_001750694.1 170723006 6112808 complement(4280584..4282281) 1 NC_010501.1 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 4282281 6112808 PputW619_3844 Pseudomonas putida W619 long-chain-fatty-acid--CoA ligase YP_001750694.1 4280584 R 390235 CDS YP_001750695.1 170723007 6112809 complement(4282585..4284273) 1 NC_010501.1 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 4284273 6112809 PputW619_3845 Pseudomonas putida W619 long-chain-fatty-acid--CoA ligase YP_001750695.1 4282585 R 390235 CDS YP_001750696.1 170723008 6112810 4284482..4285426 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3976 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4285426 6112810 PputW619_3846 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001750696.1 4284482 D 390235 CDS YP_001750697.1 170723009 6112811 4285460..4285930 1 NC_010501.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN3977 enoyl-CoA hydratase, R-specific; dehydratase 4285930 6112811 PputW619_3847 Pseudomonas putida W619 dehydratase YP_001750697.1 4285460 D 390235 CDS YP_001750698.1 170723010 6112812 complement(4285972..4287210) 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN3978 RNA polymerase sigma-70 factor, ECF subfamily; RNA polymerase ECF-subfamily sigma factor 4287210 6112812 PputW619_3848 Pseudomonas putida W619 RNA polymerase ECF-subfamily sigma factor YP_001750698.1 4285972 R 390235 CDS YP_001750699.1 170723011 6112813 complement(4287210..4287695) 1 NC_010501.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pen:PSEEN3979 hypothetical protein; activator of Hsp90 ATPase 1 family protein 4287695 6112813 PputW619_3849 Pseudomonas putida W619 activator of Hsp90 ATPase 1 family protein YP_001750699.1 4287210 R 390235 CDS YP_001750700.1 170723012 6112814 complement(4287717..4288061) 1 NC_010501.1 PFAM: DGPFAETKE family protein; KEGG: pen:PSEEN3980 hypothetical protein; DGPFAETKE family protein 4288061 6112814 PputW619_3850 Pseudomonas putida W619 DGPFAETKE family protein YP_001750700.1 4287717 R 390235 CDS YP_001750701.1 170723013 6112815 complement(4288106..4288483) 1 NC_010501.1 KEGG: pen:PSEEN3981 hypothetical protein; hypothetical protein 4288483 6112815 PputW619_3851 Pseudomonas putida W619 hypothetical protein YP_001750701.1 4288106 R 390235 CDS YP_001750702.1 170723014 6112816 complement(4288656..4289300) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3997 transporter, LysE family; lysine exporter protein LysE/YggA 4289300 6112816 PputW619_3852 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001750702.1 4288656 R 390235 CDS YP_001750703.1 170723015 6112817 complement(4289379..4289714) 1 NC_010501.1 PFAM: HicB family protein; KEGG: eba:ebA6033 conserved hypothetical protein, predicted HicB family potentially involved in pilus regulation; HicB family protein 4289714 6112817 PputW619_3853 Pseudomonas putida W619 HicB family protein YP_001750703.1 4289379 R 390235 CDS YP_001750704.1 170723016 6112818 complement(4289711..4289875) 1 NC_010501.1 KEGG: rsq:Rsph17025_4181 hypothetical protein; hypothetical protein 4289875 6112818 PputW619_3854 Pseudomonas putida W619 hypothetical protein YP_001750704.1 4289711 R 390235 CDS YP_001750705.1 170723017 6112819 complement(4290010..4290975) 1 NC_010501.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN3999 threonine dehydratase; hypothetical protein 4290975 6112819 PputW619_3855 Pseudomonas putida W619 hypothetical protein YP_001750705.1 4290010 R 390235 CDS YP_001750706.1 170723018 6112820 4291052..4292413 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN4000 transcriptional regulator, GntR family; transcriptional regulator 4292413 6112820 PputW619_3856 Pseudomonas putida W619 transcriptional regulator YP_001750706.1 4291052 D 390235 CDS YP_001750707.1 170723019 6112821 complement(4292480..4292737) 1 NC_010501.1 KEGG: pen:PSEEN4001 hypothetical protein; hypothetical protein 4292737 6112821 PputW619_3857 Pseudomonas putida W619 hypothetical protein YP_001750707.1 4292480 R 390235 CDS YP_001750708.1 170723020 6112822 4293014..4293463 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4002 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4293463 6112822 PputW619_3858 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001750708.1 4293014 D 390235 CDS YP_001750709.1 170723021 6112823 complement(4293418..4293954) 1 NC_010501.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4293954 6112823 PputW619_3859 Pseudomonas putida W619 peptide deformylase YP_001750709.1 4293418 R 390235 CDS YP_001750710.1 170723022 6112824 complement(4293951..4294904) 1 NC_010501.1 PFAM: ribonuclease BN; KEGG: pen:PSEEN4004 ribonuclease BN; ribonuclease BN 4294904 6112824 PputW619_3860 Pseudomonas putida W619 ribonuclease BN YP_001750710.1 4293951 R 390235 CDS YP_001750711.1 170723023 6112825 complement(4295059..4295238) 1 NC_010501.1 PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; CsbD family protein 4295238 6112825 PputW619_3861 Pseudomonas putida W619 CsbD family protein YP_001750711.1 4295059 R 390235 CDS YP_001750712.1 170723024 6112826 4295484..4296953 1 NC_010501.1 KEGG: aci:ACIAD1714 3-dehydroshikimate dehydratase (DHS dehydratase) (DHSase); 3-dehydroshikimate dehydratase 4296953 6112826 PputW619_3862 Pseudomonas putida W619 3-dehydroshikimate dehydratase YP_001750712.1 4295484 D 390235 CDS YP_001750713.1 170723025 6112827 4297065..4297445 1 NC_010501.1 KEGG: pen:PSEEN4006 hypothetical protein; hypothetical protein 4297445 6112827 PputW619_3863 Pseudomonas putida W619 hypothetical protein YP_001750713.1 4297065 D 390235 CDS YP_001750714.1 170723026 6112828 complement(4297448..4298284) 1 NC_010501.1 SMART: RNA binding S1 domain protein; KEGG: pen:PSEEN4007 hypothetical protein; RNA-binding S1 domain-containing protein 4298284 6112828 PputW619_3864 Pseudomonas putida W619 RNA-binding S1 domain-containing protein YP_001750714.1 4297448 R 390235 CDS YP_001750715.1 170723027 6112829 4298417..4299277 1 NC_010501.1 KEGG: pen:PSEEN4008 lipoprotein; lipoprotein 4299277 6112829 PputW619_3865 Pseudomonas putida W619 lipoprotein YP_001750715.1 4298417 D 390235 CDS YP_001750716.1 170723028 6112830 complement(4299311..4301020) 1 NC_010501.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4301020 aceK 6112830 aceK Pseudomonas putida W619 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_001750716.1 4299311 R 390235 CDS YP_001750717.1 170723029 6112831 4301122..4302054 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4010 hypothetical protein; hypothetical protein 4302054 6112831 PputW619_3867 Pseudomonas putida W619 hypothetical protein YP_001750717.1 4301122 D 390235 CDS YP_001750718.1 170723030 6112832 4302156..4302626 1 NC_010501.1 KEGG: pfl:PFL_0005 hypothetical protein; hypothetical protein 4302626 6112832 PputW619_3868 Pseudomonas putida W619 hypothetical protein YP_001750718.1 4302156 D 390235 CDS YP_001750719.1 170723031 6112833 complement(4302631..4303512) 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4011 hypothetical protein; hypothetical protein 4303512 6112833 PputW619_3869 Pseudomonas putida W619 hypothetical protein YP_001750719.1 4302631 R 390235 CDS YP_001750720.1 170723032 6112834 complement(4303915..4304850) 1 NC_010501.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN4012 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 4304850 6112834 PputW619_3870 Pseudomonas putida W619 aspartyl/asparaginyl beta-hydroxylase YP_001750720.1 4303915 R 390235 CDS YP_001750721.1 170723033 6112835 complement(4305020..4305994) 1 NC_010501.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN4013 cysteine synthase A; cysteine synthase A 4305994 6112835 PputW619_3871 Pseudomonas putida W619 cysteine synthase A YP_001750721.1 4305020 R 390235 CDS YP_001750722.1 170723034 6112836 4306127..4307200 1 NC_010501.1 KEGG: pfl:PFL_1518 hypothetical protein; hypothetical protein 4307200 6112836 PputW619_3872 Pseudomonas putida W619 hypothetical protein YP_001750722.1 4306127 D 390235 CDS YP_001750723.1 170723035 6112837 4307332..4308177 1 NC_010501.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4014 ATPase, AAA family; ATPase 4308177 6112837 PputW619_3873 Pseudomonas putida W619 ATPase YP_001750723.1 4307332 D 390235 CDS YP_001750724.1 170723036 6112838 4308190..4309368 1 NC_010501.1 KEGG: pen:PSEEN4015 hypothetical protein; hypothetical protein 4309368 6112838 PputW619_3874 Pseudomonas putida W619 hypothetical protein YP_001750724.1 4308190 D 390235 CDS YP_001750725.1 170723037 6112839 complement(4309478..4310395) 1 NC_010501.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: pen:PSEEN4016 allophanate hydrolase subunit 2; urea amidolyase-like protein 4310395 6112839 PputW619_3875 Pseudomonas putida W619 urea amidolyase-like protein YP_001750725.1 4309478 R 390235 CDS YP_001750726.1 170723038 6112840 complement(4310392..4311087) 1 NC_010501.1 PFAM: Allophanate hydrolase subunit 1; KEGG: pen:PSEEN4017 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 4311087 6112840 PputW619_3876 Pseudomonas putida W619 allophanate hydrolase subunit 1 YP_001750726.1 4310392 R 390235 CDS YP_001750727.1 170723039 6112841 complement(4311084..4311863) 1 NC_010501.1 PFAM: LamB/YcsF family protein; KEGG: pen:PSEEN4018 hypothetical protein; LamB/YcsF family protein 4311863 6112841 PputW619_3877 Pseudomonas putida W619 LamB/YcsF family protein YP_001750727.1 4311084 R 390235 CDS YP_001750728.1 170723040 6112842 complement(4311873..4313159) 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4019 transporter, MFS family; major facilitator transporter 4313159 6112842 PputW619_3878 Pseudomonas putida W619 major facilitator transporter YP_001750728.1 4311873 R 390235 CDS YP_001750729.1 170723041 6112843 4313289..4314200 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 4314200 6112843 PputW619_3879 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750729.1 4313289 D 390235 CDS YP_001750730.1 170723042 6112844 4314526..4315137 1 NC_010501.1 KEGG: psp:PSPPH_5070 hypothetical protein; hypothetical protein 4315137 6112844 PputW619_3880 Pseudomonas putida W619 hypothetical protein YP_001750730.1 4314526 D 390235 CDS YP_001750731.1 170723043 6112845 4315143..4319303 1 NC_010501.1 TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 4319303 6112845 PputW619_3881 Pseudomonas putida W619 YD repeat-containing protein YP_001750731.1 4315143 D 390235 CDS YP_001750732.1 170723044 6112846 4320042..4320506 1 NC_010501.1 KEGG: psb:Psyr_4989 hypothetical protein; hypothetical protein 4320506 6112846 PputW619_3882 Pseudomonas putida W619 hypothetical protein YP_001750732.1 4320042 D 390235 CDS YP_001750733.1 170723045 6112848 4321807..4322502 1 NC_010501.1 PFAM: RHS protein; KEGG: ypp:YPDSF_0215 hypothetical protein; RHS protein 4322502 6112848 PputW619_3884 Pseudomonas putida W619 RHS protein YP_001750733.1 4321807 D 390235 CDS YP_001750734.1 170723046 6112849 4322507..4322980 1 NC_010501.1 KEGG: ypn:YPN_3562 hypothetical protein; hypothetical protein 4322980 6112849 PputW619_3885 Pseudomonas putida W619 hypothetical protein YP_001750734.1 4322507 D 390235 CDS YP_001750735.1 170723047 6112850 4323361..4323723 1 NC_010501.1 KEGG: psp:PSPPH_4833 rhs family protein; hypothetical protein 4323723 6112850 PputW619_3886 Pseudomonas putida W619 hypothetical protein YP_001750735.1 4323361 D 390235 CDS YP_001750736.1 170723048 6112851 complement(4323677..4324198) 1 NC_010501.1 KEGG: pen:PSEEN4022 hypothetical protein; hypothetical protein 4324198 6112851 PputW619_3887 Pseudomonas putida W619 hypothetical protein YP_001750736.1 4323677 R 390235 CDS YP_001750737.1 170723049 6112852 complement(4324208..4324981) 1 NC_010501.1 PFAM: glutamine amidotransferase class-II; KEGG: pen:PSEEN4023 glutamine amidotransferase, class II; glutamine amidotransferase 4324981 6112852 PputW619_3888 Pseudomonas putida W619 glutamine amidotransferase YP_001750737.1 4324208 R 390235 CDS YP_001750738.1 170723050 6112853 complement(4324996..4325490) 1 NC_010501.1 KEGG: pen:PSEEN4024 hypothetical protein; hypothetical protein 4325490 6112853 PputW619_3889 Pseudomonas putida W619 hypothetical protein YP_001750738.1 4324996 R 390235 CDS YP_001750739.1 170723051 6112854 4325573..4327615 1 NC_010501.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: pen:PSEEN4025 peptidase, S9 family; oligopeptidase B 4327615 6112854 PputW619_3890 Pseudomonas putida W619 oligopeptidase B YP_001750739.1 4325573 D 390235 CDS YP_001750740.1 170723052 6112855 4327729..4328196 1 NC_010501.1 PFAM: cyclic nucleotide-binding; KEGG: pen:PSEEN4026 hypothetical protein; cyclic nucleotide-binding protein 4328196 6112855 PputW619_3891 Pseudomonas putida W619 cyclic nucleotide-binding protein YP_001750740.1 4327729 D 390235 CDS YP_001750741.1 170723053 6112856 complement(4328193..4328471) 1 NC_010501.1 KEGG: pen:PSEEN4027 hypothetical protein; hypothetical protein 4328471 6112856 PputW619_3892 Pseudomonas putida W619 hypothetical protein YP_001750741.1 4328193 R 390235 CDS YP_001750742.1 170723054 6112857 4328603..4328974 1 NC_010501.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pfl:PFL_1503 hypothetical protein; hypothetical protein 4328974 6112857 PputW619_3893 Pseudomonas putida W619 hypothetical protein YP_001750742.1 4328603 D 390235 CDS YP_001750743.1 170723055 6112858 4329115..4329516 1 NC_010501.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN4029 hypothetical protein; tRNA/rRNA methyltransferase SpoU 4329516 6112858 PputW619_3894 Pseudomonas putida W619 tRNA/rRNA methyltransferase SpoU YP_001750743.1 4329115 D 390235 CDS YP_001750744.1 170723056 6112859 4329632..4329973 1 NC_010501.1 KEGG: pfo:Pfl_1394 hypothetical protein; hypothetical protein 4329973 6112859 PputW619_3895 Pseudomonas putida W619 hypothetical protein YP_001750744.1 4329632 D 390235 CDS YP_001750745.1 170723057 6112860 complement(4330020..4331228) 1 NC_010501.1 KEGG: pen:PSEEN4030 hypothetical protein; hypothetical protein 4331228 6112860 PputW619_3896 Pseudomonas putida W619 hypothetical protein YP_001750745.1 4330020 R 390235 CDS YP_001750746.1 170723058 6112861 complement(4331270..4331758) 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN4031 hypothetical protein; hypothetical protein 4331758 6112861 PputW619_3897 Pseudomonas putida W619 hypothetical protein YP_001750746.1 4331270 R 390235 CDS YP_001750747.1 170723059 6112862 complement(4331906..4332838) 1 NC_010501.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4033 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4332838 6112862 PputW619_3898 Pseudomonas putida W619 D-isomer specific 2-hydroxyacid dehydrogenase YP_001750747.1 4331906 R 390235 CDS YP_001750748.1 170723060 6112863 complement(4332917..4333210) 1 NC_010501.1 PFAM: protein of unknown function DUF709; KEGG: pen:PSEEN4034 hypothetical protein; hypothetical protein 4333210 6112863 PputW619_3899 Pseudomonas putida W619 hypothetical protein YP_001750748.1 4332917 R 390235 CDS YP_001750749.1 170723061 6112864 complement(4333207..4334340) 1 NC_010501.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pen:PSEEN4035 ribonuclease D, processes tRNA; ribonuclease D 4334340 6112864 PputW619_3900 Pseudomonas putida W619 ribonuclease D YP_001750749.1 4333207 R 390235 CDS YP_001750750.1 170723062 6112865 complement(4334444..4334809) 1 NC_010501.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pen:PSEEN4037 5-carboxymethyl-2-hydroxymuconate delta isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase 4334809 6112865 PputW619_3901 Pseudomonas putida W619 5-carboxymethyl-2-hydroxymuconate isomerase YP_001750750.1 4334444 R 390235 CDS YP_001750751.1 170723063 6112866 4334925..4335161 1 NC_010501.1 KEGG: pen:PSEEN4038 hypothetical protein; hypothetical protein 4335161 6112866 PputW619_3902 Pseudomonas putida W619 hypothetical protein YP_001750751.1 4334925 D 390235 CDS YP_001750752.1 170723064 6112867 complement(4335230..4336402) 1 NC_010501.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN4039 cystathionine gamma-synthase; cystathionine gamma-lyase 4336402 6112867 PputW619_3903 Pseudomonas putida W619 cystathionine gamma-lyase YP_001750752.1 4335230 R 390235 CDS YP_001750753.1 170723065 6112868 4336537..4336998 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4041 transcriptional regulator, AsnC familiy; AsnC family transcriptional regulator 4336998 6112868 PputW619_3904 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001750753.1 4336537 D 390235 CDS YP_001750754.1 170723066 6112869 complement(4337022..4339349) 1 NC_010501.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN4042 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 4339349 6112869 PputW619_3905 Pseudomonas putida W619 oxidoreductase alpha (molybdopterin) subunit YP_001750754.1 4337022 R 390235 CDS YP_001750755.1 170723067 6112870 4339670..4340674 1 NC_010501.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4340674 moaA 6112870 moaA Pseudomonas putida W619 molybdenum cofactor biosynthesis protein A YP_001750755.1 4339670 D 390235 CDS YP_001750756.1 170723068 6112871 4340695..4341594 1 NC_010501.1 PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN4044 hypothetical protein; hypothetical protein 4341594 6112871 PputW619_3907 Pseudomonas putida W619 hypothetical protein YP_001750756.1 4340695 D 390235 CDS YP_001750757.1 170723069 6112872 complement(4341699..4342238) 1 NC_010501.1 TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN4045 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 4342238 6112872 PputW619_3908 Pseudomonas putida W619 molybdenum cofactor biosynthesis protein B YP_001750757.1 4341699 R 390235 CDS YP_001750758.1 170723070 6112873 4342378..4343265 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4046 transcriptional regulator, LysR family; LysR family transcriptional regulator 4343265 6112873 PputW619_3909 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750758.1 4342378 D 390235 CDS YP_001750759.1 170723071 6112874 complement(4343349..4344563) 1 NC_010501.1 hypothetical protein 4344563 6112874 PputW619_3910 Pseudomonas putida W619 hypothetical protein YP_001750759.1 4343349 R 390235 CDS YP_001750760.1 170723072 6112875 complement(4344574..4346463) 1 NC_010501.1 KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein 4346463 6112875 PputW619_3911 Pseudomonas putida W619 hypothetical protein YP_001750760.1 4344574 R 390235 CDS YP_001750761.1 170723073 6112876 complement(4346472..4347329) 1 NC_010501.1 PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: psp:PSPPH_0908 lipoprotein, putative; SH3 type 3 domain-containing protein 4347329 6112876 PputW619_3912 Pseudomonas putida W619 SH3 type 3 domain-containing protein YP_001750761.1 4346472 R 390235 CDS YP_001750762.1 170723074 6112877 complement(4347932..4349023) 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN4054 xenobiotic reductase A; NADH:flavin oxidoreductase 4349023 6112877 PputW619_3913 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001750762.1 4347932 R 390235 CDS YP_001750763.1 170723075 6112878 4349073..4349408 1 NC_010501.1 PFAM: regulatory protein ArsR; KEGG: pen:PSEEN4055 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 4349408 6112878 PputW619_3914 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001750763.1 4349073 D 390235 CDS YP_001750764.1 170723076 6112879 complement(4349490..4351127) 1 NC_010501.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 4351127 6112879 PputW619_3915 Pseudomonas putida W619 malate:quinone oxidoreductase YP_001750764.1 4349490 R 390235 CDS YP_001750765.1 170723077 6112880 complement(4351456..4351647) 1 NC_010501.1 KEGG: pen:PSEEN4057 hypothetical protein; hypothetical protein 4351647 6112880 PputW619_3916 Pseudomonas putida W619 hypothetical protein YP_001750765.1 4351456 R 390235 CDS YP_001750766.1 170723078 6112881 4352174..4352437 1 NC_010501.1 KEGG: pen:PSEEN2483 hypothetical protein; hypothetical protein 4352437 6112881 PputW619_3917 Pseudomonas putida W619 hypothetical protein YP_001750766.1 4352174 D 390235 CDS YP_001750767.1 170723079 6112882 4353251..4353907 1 NC_010501.1 KEGG: noc:Noc_0408 hypothetical protein; hypothetical protein 4353907 6112882 PputW619_3918 Pseudomonas putida W619 hypothetical protein YP_001750767.1 4353251 D 390235 CDS YP_001750768.1 170723080 6112883 complement(4353908..4354168) 1 NC_010501.1 KEGG: pap:PSPA7_0775 lipoprotein, putative; putative lipoprotein 4354168 6112883 PputW619_3919 Pseudomonas putida W619 putative lipoprotein YP_001750768.1 4353908 R 390235 CDS YP_001750769.1 170723081 6112884 complement(4354165..4354527) 1 NC_010501.1 KEGG: pap:PSPA7_2431 hypothetical protein; hypothetical protein 4354527 6112884 PputW619_3920 Pseudomonas putida W619 hypothetical protein YP_001750769.1 4354165 R 390235 CDS YP_001750770.1 170723082 6112885 complement(4354524..4354961) 1 NC_010501.1 KEGG: pmy:Pmen_3951 hypothetical protein; hypothetical protein 4354961 6112885 PputW619_3921 Pseudomonas putida W619 hypothetical protein YP_001750770.1 4354524 R 390235 CDS YP_001750771.1 170723083 6112886 4355050..4355412 1 NC_010501.1 KEGG: psb:Psyr_2860 hypothetical protein; hypothetical protein 4355412 6112886 PputW619_3922 Pseudomonas putida W619 hypothetical protein YP_001750771.1 4355050 D 390235 CDS YP_001750772.1 170723084 6112887 4355480..4355803 1 NC_010501.1 KEGG: psb:Psyr_2860 hypothetical protein; hypothetical protein 4355803 6112887 PputW619_3923 Pseudomonas putida W619 hypothetical protein YP_001750772.1 4355480 D 390235 CDS YP_001750773.1 170723085 6112888 complement(4355813..4356043) 1 NC_010501.1 hypothetical protein 4356043 6112888 PputW619_3924 Pseudomonas putida W619 hypothetical protein YP_001750773.1 4355813 R 390235 CDS YP_001750774.1 170723086 6112889 complement(4356066..4356758) 1 NC_010501.1 hypothetical protein 4356758 6112889 PputW619_3925 Pseudomonas putida W619 hypothetical protein YP_001750774.1 4356066 R 390235 CDS YP_001750775.1 170723087 6112890 complement(4356758..4357051) 1 NC_010501.1 hypothetical protein 4357051 6112890 PputW619_3926 Pseudomonas putida W619 hypothetical protein YP_001750775.1 4356758 R 390235 CDS YP_001750776.1 170723088 6112891 complement(4357067..4363090) 1 NC_010501.1 PFAM: Protein of unknown function DUF1983; KEGG: psb:Psyr_2772 fibronectin, type III; hypothetical protein 4363090 6112891 PputW619_3927 Pseudomonas putida W619 hypothetical protein YP_001750776.1 4357067 R 390235 CDS YP_001750777.1 170723089 6112892 complement(4363149..4363778) 1 NC_010501.1 PFAM: lambda tail assembly I; KEGG: psb:Psyr_2774 bacteriophage lambda tail assembly I; lambda tail assembly I 4363778 6112892 PputW619_3928 Pseudomonas putida W619 lambda tail assembly I YP_001750777.1 4363149 R 390235 CDS YP_001750778.1 170723090 6112893 complement(4363821..4364171) 1 NC_010501.1 KEGG: ype:YPO2128 putative phage-related lipoprotein; putative phage-related lipoprotein 4364171 6112893 PputW619_3929 Pseudomonas putida W619 putative phage-related lipoprotein YP_001750778.1 4363821 R 390235 CDS YP_001750779.1 170723091 6112894 complement(4364204..4364959) 1 NC_010501.1 PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: psb:Psyr_2777 NLP/P60; NLP/P60 protein 4364959 6112894 PputW619_3930 Pseudomonas putida W619 NLP/P60 protein YP_001750779.1 4364204 R 390235 CDS YP_001750780.1 170723092 6112895 complement(4364962..4365711) 1 NC_010501.1 TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: pap:PSPA7_2419 phage minor tail protein L; phage minor tail protein L 4365711 6112895 PputW619_3931 Pseudomonas putida W619 phage minor tail protein L YP_001750780.1 4364962 R 390235 CDS YP_001750781.1 170723093 6112896 complement(4365708..4366046) 1 NC_010501.1 PFAM: minor tail family protein; KEGG: pap:PSPA7_2418 phage minor tail protein; minor tail family protein 4366046 6112896 PputW619_3932 Pseudomonas putida W619 minor tail family protein YP_001750781.1 4365708 R 390235 CDS YP_001750782.1 170723094 6112897 complement(4366046..4369360) 1 NC_010501.1 TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: pfl:PFL_3753 prophage LambdaSo, tail length tape meausure protein, putative; lambda family phage tail tape measure protein 4369360 6112897 PputW619_3933 Pseudomonas putida W619 lambda family phage tail tape measure protein YP_001750782.1 4366046 R 390235 CDS YP_001750783.1 170723095 6112898 complement(4369405..4369638) 1 NC_010501.1 hypothetical protein 4369638 6112898 PputW619_3934 Pseudomonas putida W619 hypothetical protein YP_001750783.1 4369405 R 390235 CDS YP_001750784.1 170723096 6112899 complement(4369635..4369979) 1 NC_010501.1 hypothetical protein 4369979 6112899 PputW619_3935 Pseudomonas putida W619 hypothetical protein YP_001750784.1 4369635 R 390235 CDS YP_001750785.1 170723097 6112900 complement(4370020..4370520) 1 NC_010501.1 KEGG: mes:Meso_1894 hypothetical protein; hypothetical protein 4370520 6112900 PputW619_3936 Pseudomonas putida W619 hypothetical protein YP_001750785.1 4370020 R 390235 CDS YP_001750786.1 170723098 6112901 complement(4370576..4370962) 1 NC_010501.1 KEGG: rpc:RPC_1815 gene transfer agent (GTA) orfg8; hypothetical protein 4370962 6112901 PputW619_3937 Pseudomonas putida W619 hypothetical protein YP_001750786.1 4370576 R 390235 CDS YP_001750787.1 170723099 6112902 complement(4370955..4371455) 1 NC_010501.1 TIGRFAM: phage protein, HK97 gp10 family; HK97 family phage protein 4371455 6112902 PputW619_3938 Pseudomonas putida W619 HK97 family phage protein YP_001750787.1 4370955 R 390235 CDS YP_001750788.1 170723100 6112903 complement(4371459..4371638) 1 NC_010501.1 hypothetical protein 4371638 6112903 PputW619_3939 Pseudomonas putida W619 hypothetical protein YP_001750788.1 4371459 R 390235 CDS YP_001750789.1 170723101 6112904 complement(4371647..4371973) 1 NC_010501.1 TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: dvu:DVU1497 head-tail adaptor, putative; phage head-tail adaptor 4371973 6112904 PputW619_3940 Pseudomonas putida W619 phage head-tail adaptor YP_001750789.1 4371647 R 390235 CDS YP_001750790.1 170723102 6112905 complement(4371973..4372272) 1 NC_010501.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: asu:Asuc_1241 uncharacterized phage protein; phage protein 4372272 6112905 PputW619_3941 Pseudomonas putida W619 phage protein YP_001750790.1 4371973 R 390235 CDS YP_001750791.1 170723103 6112906 complement(4372273..4372644) 1 NC_010501.1 KEGG: ncr:NCU07868.1 hypothetical protein; hypothetical protein 4372644 6112906 PputW619_3942 Pseudomonas putida W619 hypothetical protein YP_001750791.1 4372273 R 390235 CDS YP_001750792.1 170723104 6112907 complement(4372700..4373902) 1 NC_010501.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: rsh:Rsph17029_3318 phage major capsid protein, HK97 family; HK97 family phage major capsid protein 4373902 6112907 PputW619_3943 Pseudomonas putida W619 HK97 family phage major capsid protein YP_001750792.1 4372700 R 390235 CDS YP_001750793.1 170723105 6112908 complement(4373899..4374540) 1 NC_010501.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: xau:Xaut_3708 phage prohead protease, HK97 family; HK97 family phage prohead protease 4374540 6112908 PputW619_3944 Pseudomonas putida W619 HK97 family phage prohead protease YP_001750793.1 4373899 R 390235 CDS YP_001750794.1 170723106 6112909 complement(4374527..4375741) 1 NC_010501.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: sgl:SG0723 phage portal protein; HK97 family phage portal protein 4375741 6112909 PputW619_3945 Pseudomonas putida W619 HK97 family phage portal protein YP_001750794.1 4374527 R 390235 CDS YP_001750795.1 170723107 6112910 complement(4375744..4377432) 1 NC_010501.1 PFAM: Terminase; KEGG: ecs:ECs2251 putative terminase large subunit; terminase 4377432 6112910 PputW619_3946 Pseudomonas putida W619 terminase YP_001750795.1 4375744 R 390235 CDS YP_001750796.1 170723108 6112911 complement(4377429..4377962) 1 NC_010501.1 KEGG: bte:BTH_II1043 hypothetical protein; hypothetical protein 4377962 6112911 PputW619_3947 Pseudomonas putida W619 hypothetical protein YP_001750796.1 4377429 R 390235 CDS YP_001750797.1 170723109 6112912 complement(4378121..4378459) 1 NC_010501.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_A0538 hypothetical protein; HNH endonuclease 4378459 6112912 PputW619_3948 Pseudomonas putida W619 HNH endonuclease YP_001750797.1 4378121 R 390235 CDS YP_001750798.1 170723110 6112913 complement(4378459..4378653) 1 NC_010501.1 hypothetical protein 4378653 6112913 PputW619_3949 Pseudomonas putida W619 hypothetical protein YP_001750798.1 4378459 R 390235 CDS YP_001750799.1 170723111 6112914 complement(4378703..4379035) 1 NC_010501.1 TIGRFAM: phage holin, lambda family; PFAM: Holin phage lambda; KEGG: pfl:PFL_3770 holin, lambda family; phage holin 4379035 6112914 PputW619_3950 Pseudomonas putida W619 phage holin YP_001750799.1 4378703 R 390235 CDS YP_001750800.1 170723112 6112915 complement(4379920..4380279) 1 NC_010501.1 KEGG: sdn:Sden_2835 hypothetical protein; hypothetical protein 4380279 6112915 PputW619_3951 Pseudomonas putida W619 hypothetical protein YP_001750800.1 4379920 R 390235 CDS YP_001750801.1 170723113 6112916 complement(4380430..4380819) 1 NC_010501.1 KEGG: hch:HCH_00599 hypothetical protein; hypothetical protein 4380819 6112916 PputW619_3952 Pseudomonas putida W619 hypothetical protein YP_001750801.1 4380430 R 390235 CDS YP_001750802.1 170723114 6112917 complement(4380816..4381103) 1 NC_010501.1 hypothetical protein 4381103 6112917 PputW619_3953 Pseudomonas putida W619 hypothetical protein YP_001750802.1 4380816 R 390235 CDS YP_001750803.1 170723115 6112918 complement(4381100..4381630) 1 NC_010501.1 hypothetical protein 4381630 6112918 PputW619_3954 Pseudomonas putida W619 hypothetical protein YP_001750803.1 4381100 R 390235 CDS YP_001750804.1 170723116 6112919 complement(4381617..4382999) 1 NC_010501.1 PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: pmy:Pmen_0649 replicative DNA helicase; DnaB domain-containing protein 4382999 6112919 PputW619_3955 Pseudomonas putida W619 DnaB domain-containing protein YP_001750804.1 4381617 R 390235 CDS YP_001750805.1 170723117 6112920 complement(4382996..4383778) 1 NC_010501.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB ATP binding domain-containing protein 4383778 6112920 PputW619_3956 Pseudomonas putida W619 IstB ATP binding domain-containing protein YP_001750805.1 4382996 R 390235 CDS YP_001750806.1 170723118 6112921 complement(4383775..4384569) 1 NC_010501.1 KEGG: pna:Pnap_2260 hypothetical protein; hypothetical protein 4384569 6112921 PputW619_3957 Pseudomonas putida W619 hypothetical protein YP_001750806.1 4383775 R 390235 CDS YP_001750807.1 170723119 6112922 complement(4384566..4384796) 1 NC_010501.1 hypothetical protein 4384796 6112922 PputW619_3958 Pseudomonas putida W619 hypothetical protein YP_001750807.1 4384566 R 390235 CDS YP_001750808.1 170723120 6112923 complement(4384793..4385434) 1 NC_010501.1 hypothetical protein 4385434 6112923 PputW619_3959 Pseudomonas putida W619 hypothetical protein YP_001750808.1 4384793 R 390235 CDS YP_001750809.1 170723121 6112924 complement(4385431..4386195) 1 NC_010501.1 KEGG: mgm:Mmc1_2768 hypothetical protein; hypothetical protein 4386195 6112924 PputW619_3960 Pseudomonas putida W619 hypothetical protein YP_001750809.1 4385431 R 390235 CDS YP_001750810.1 170723122 6112925 complement(4386192..4386485) 1 NC_010501.1 hypothetical protein 4386485 6112925 PputW619_3961 Pseudomonas putida W619 hypothetical protein YP_001750810.1 4386192 R 390235 CDS YP_001750811.1 170723123 6112926 complement(4386482..4386772) 1 NC_010501.1 hypothetical protein 4386772 6112926 PputW619_3962 Pseudomonas putida W619 hypothetical protein YP_001750811.1 4386482 R 390235 CDS YP_001750812.1 170723124 6112927 complement(4386769..4387098) 1 NC_010501.1 hypothetical protein 4387098 6112927 PputW619_3963 Pseudomonas putida W619 hypothetical protein YP_001750812.1 4386769 R 390235 CDS YP_001750813.1 170723125 6112928 4387936..4388715 1 NC_010501.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pfl:PFL_2126 transcriptional regulator, Cro/CI family; putative phage repressor 4388715 6112928 PputW619_3964 Pseudomonas putida W619 putative phage repressor YP_001750813.1 4387936 D 390235 CDS YP_001750814.1 170723126 6112929 4388872..4389261 1 NC_010501.1 PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2243 LuxR family DNA binding protein; LuxR family transcriptional regulator 4389261 6112929 PputW619_3965 Pseudomonas putida W619 LuxR family transcriptional regulator YP_001750814.1 4388872 D 390235 CDS YP_001750815.1 170723127 6112930 4389352..4389765 1 NC_010501.1 PFAM: carbon storage regulator; KEGG: cbs:COXBURSA331_A0885 carbon storage regulator; carbon storage regulator CsrA 4389765 6112930 PputW619_3966 Pseudomonas putida W619 carbon storage regulator CsrA YP_001750815.1 4389352 D 390235 CDS YP_001750816.1 170723128 6112931 4390257..4390814 1 NC_010501.1 KEGG: pst:PSPTO_3946 hypothetical protein; hypothetical protein 4390814 6112931 PputW619_3967 Pseudomonas putida W619 hypothetical protein YP_001750816.1 4390257 D 390235 CDS YP_001750817.1 170723129 6112932 4390804..4391046 1 NC_010501.1 KEGG: pst:PSPTO_3947 hypothetical protein; hypothetical protein 4391046 6112932 PputW619_3968 Pseudomonas putida W619 hypothetical protein YP_001750817.1 4390804 D 390235 CDS YP_001750818.1 170723130 6112933 4391101..4391349 1 NC_010501.1 hypothetical protein 4391349 6112933 PputW619_3969 Pseudomonas putida W619 hypothetical protein YP_001750818.1 4391101 D 390235 CDS YP_001750819.1 170723131 6112934 complement(4391365..4391949) 1 NC_010501.1 hypothetical protein 4391949 6112934 PputW619_3970 Pseudomonas putida W619 hypothetical protein YP_001750819.1 4391365 R 390235 CDS YP_001750820.1 170723132 6112935 complement(4392912..4393934) 1 NC_010501.1 PFAM: integrase family protein; KEGG: pst:PSPTO_3949 site-specific recombinase, phage integrase family; integrase family protein 4393934 6112935 PputW619_3971 Pseudomonas putida W619 integrase family protein YP_001750820.1 4392912 R 390235 CDS YP_001750821.1 170723133 6112937 complement(4394181..4394891) 1 NC_010501.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4394891 6112937 PputW619_3972 Pseudomonas putida W619 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001750821.1 4394181 R 390235 CDS YP_001750822.1 170723134 6112938 complement(4394922..4395680) 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4062 beta-lactamase-like; beta-lactamase domain-containing protein 4395680 6112938 PputW619_3973 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001750822.1 4394922 R 390235 CDS YP_001750823.1 170723135 6112939 complement(4395681..4396799) 1 NC_010501.1 KEGG: pen:PSEEN4063 lipoprotein; lipoprotein 4396799 6112939 PputW619_3974 Pseudomonas putida W619 lipoprotein YP_001750823.1 4395681 R 390235 CDS YP_001750824.1 170723136 6112940 complement(4396817..4397695) 1 NC_010501.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 4397695 6112940 PputW619_3975 Pseudomonas putida W619 dihydrodipicolinate synthase YP_001750824.1 4396817 R 390235 CDS YP_001750825.1 170723137 6112941 4397956..4398516 1 NC_010501.1 KEGG: pen:PSEEN4066 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 4398516 6112941 PputW619_3976 Pseudomonas putida W619 glycine cleavage system transcriptional repressor YP_001750825.1 4397956 D 390235 CDS YP_001750826.1 170723138 6112942 4398528..4399001 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN4067 hypothetical protein; alkyl hydroperoxide reductase 4399001 6112942 PputW619_3977 Pseudomonas putida W619 alkyl hydroperoxide reductase YP_001750826.1 4398528 D 390235 CDS YP_001750827.1 170723139 6112943 complement(4399116..4400186) 1 NC_010501.1 PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN4068 permease (PerM family); hypothetical protein 4400186 6112943 PputW619_3978 Pseudomonas putida W619 hypothetical protein YP_001750827.1 4399116 R 390235 CDS YP_001750828.1 170723140 6112944 complement(4400207..4400446) 1 NC_010501.1 PFAM: SirA family protein; KEGG: pen:PSEEN4069 hypothetical protein; SirA family protein 4400446 6112944 PputW619_3979 Pseudomonas putida W619 SirA family protein YP_001750828.1 4400207 R 390235 CDS YP_001750829.1 170723141 6112945 4400566..4402002 1 NC_010501.1 PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN4070 peptidase M48 family; peptidase M48 Ste24p 4402002 6112945 PputW619_3980 Pseudomonas putida W619 peptidase M48 Ste24p YP_001750829.1 4400566 D 390235 CDS YP_001750830.1 170723142 6112946 complement(4402097..4403155) 1 NC_010501.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 4403155 6112946 PputW619_3981 Pseudomonas putida W619 quinolinate synthetase YP_001750830.1 4402097 R 390235 CDS YP_001750831.1 170723143 6112947 complement(4403454..4404962) 1 NC_010501.1 PFAM: protein of unknown function DUF945; KEGG: pen:PSEEN4072 hypothetical protein; hypothetical protein 4404962 6112947 PputW619_3982 Pseudomonas putida W619 hypothetical protein YP_001750831.1 4403454 R 390235 CDS YP_001750832.1 170723144 6112948 4405511..4406863 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4074 amino acid transport protein (APC family); amino acid permease-associated protein 4406863 6112948 PputW619_3983 Pseudomonas putida W619 amino acid permease-associated protein YP_001750832.1 4405511 D 390235 CDS YP_001750833.1 170723145 6112949 4406930..4408996 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4075 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4408996 6112949 PputW619_3984 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001750833.1 4406930 D 390235 CDS YP_001750834.1 170723146 6112950 4409073..4410032 1 NC_010501.1 PFAM: cation efflux protein; KEGG: rpa:RPA2440 cation efflux protein; cation efflux protein 4410032 6112950 PputW619_3985 Pseudomonas putida W619 cation efflux protein YP_001750834.1 4409073 D 390235 CDS YP_001750835.1 170723147 6112951 4410297..4411637 1 NC_010501.1 KEGG: sbm:Shew185_1994 hypothetical protein; hypothetical protein 4411637 6112951 PputW619_3986 Pseudomonas putida W619 hypothetical protein YP_001750835.1 4410297 D 390235 CDS YP_001750836.1 170723148 6112952 4411642..4412133 1 NC_010501.1 KEGG: sbn:Sbal195_2043 hypothetical protein; hypothetical protein 4412133 6112952 PputW619_3987 Pseudomonas putida W619 hypothetical protein YP_001750836.1 4411642 D 390235 CDS YP_001750837.1 170723149 6112953 4412130..4414388 1 NC_010501.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: sbl:Sbal_1981 FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase 4414388 6112953 PputW619_3988 Pseudomonas putida W619 glucose-methanol-choline oxidoreductase YP_001750837.1 4412130 D 390235 CDS YP_001750838.1 170723150 6112955 complement(4414852..4415526) 1 NC_010501.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pen:PSEEN4083 hypothetical protein; exsB protein 4415526 6112955 PputW619_3989 Pseudomonas putida W619 exsB protein YP_001750838.1 4414852 R 390235 CDS YP_001750839.1 170723151 6112956 complement(4415543..4416190) 1 NC_010501.1 PFAM: Radical SAM domain protein; KEGG: pen:PSEEN4084 radical activating enzyme; radical SAM domain-containing protein 4416190 6112956 PputW619_3990 Pseudomonas putida W619 radical SAM domain-containing protein YP_001750839.1 4415543 R 390235 CDS YP_001750840.1 170723152 6112957 complement(4416350..4417165) 1 NC_010501.1 TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN4085 hypothetical protein; tol-pal system protein YbgF 4417165 6112957 PputW619_3991 Pseudomonas putida W619 tol-pal system protein YbgF YP_001750840.1 4416350 R 390235 CDS YP_001750841.1 170723153 6112958 complement(4417172..4417669) 1 NC_010501.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN4086 peptidoglycan-associated lipoprotein precursor; peptidoglycan-associated lipoprotein 4417669 6112958 PputW619_3992 Pseudomonas putida W619 peptidoglycan-associated lipoprotein YP_001750841.1 4417172 R 390235 CDS YP_001750842.1 170723154 6112959 complement(4417724..4418995) 1 NC_010501.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 4418995 tolB 6112959 tolB Pseudomonas putida W619 translocation protein TolB YP_001750842.1 4417724 R 390235 CDS YP_001750843.1 170723155 6112960 complement(4419022..4420098) 1 NC_010501.1 TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: pen:PSEEN4088 biopolymer transport protein TolA; protein TolA 4420098 6112960 PputW619_3994 Pseudomonas putida W619 protein TolA YP_001750843.1 4419022 R 390235 CDS YP_001750844.1 170723156 6112961 complement(4420098..4420550) 1 NC_010501.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN4089 biopolymer transport protein TolR; protein TolR 4420550 6112961 PputW619_3995 Pseudomonas putida W619 protein TolR YP_001750844.1 4420098 R 390235 CDS YP_001750845.1 170723157 6112962 complement(4420565..4421260) 1 NC_010501.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN4090 biopolymer transport protein TolQ; protein TolQ 4421260 6112962 PputW619_3996 Pseudomonas putida W619 protein TolQ YP_001750845.1 4420565 R 390235 CDS YP_001750846.1 170723158 6112963 complement(4421263..4421715) 1 NC_010501.1 TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4091 thioesterase; tol-pal system-associated acyl-CoA thioesterase 4421715 6112963 PputW619_3997 Pseudomonas putida W619 tol-pal system-associated acyl-CoA thioesterase YP_001750846.1 4421263 R 390235 CDS YP_001750847.1 170723159 6112964 complement(4421841..4422887) 1 NC_010501.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4422887 ruvB 6112964 ruvB Pseudomonas putida W619 Holliday junction DNA helicase RuvB YP_001750847.1 4421841 R 390235 CDS YP_001750848.1 170723160 6112965 complement(4422884..4423501) 1 NC_010501.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4423501 ruvA 6112965 ruvA Pseudomonas putida W619 Holliday junction DNA helicase RuvA YP_001750848.1 4422884 R 390235 CDS YP_001750849.1 170723161 6112966 complement(4423611..4424135) 1 NC_010501.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 4424135 ruvC 6112966 ruvC Pseudomonas putida W619 Holliday junction resolvase YP_001750849.1 4423611 R 390235 CDS YP_001750850.1 170723162 6112967 complement(4424331..4425077) 1 NC_010501.1 PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN4095 hypothetical protein; hypothetical protein 4425077 6112967 PputW619_4001 Pseudomonas putida W619 hypothetical protein YP_001750850.1 4424331 R 390235 CDS YP_001750851.1 170723163 6112968 complement(4425189..4426964) 1 NC_010501.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 4426964 aspS 6112968 aspS Pseudomonas putida W619 aspartyl-tRNA synthetase YP_001750851.1 4425189 R 390235 CDS YP_001750852.1 170723164 6112969 complement(4427060..4427281) 1 NC_010501.1 TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pen:PSEEN4097 hypothetical protein; FmdB family regulatory protein 4427281 6112969 PputW619_4003 Pseudomonas putida W619 FmdB family regulatory protein YP_001750852.1 4427060 R 390235 CDS YP_001750853.1 170723165 6112970 complement(4427375..4427704) 1 NC_010501.1 KEGG: pen:PSEEN4098 hypothetical protein; hypothetical protein 4427704 6112970 PputW619_4004 Pseudomonas putida W619 hypothetical protein YP_001750853.1 4427375 R 390235 CDS YP_001750854.1 170723166 6112971 complement(4427894..4428367) 1 NC_010501.1 PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN4099 DNA-binding stress protein, Dps family; ferritin Dps family protein 4428367 6112971 PputW619_4005 Pseudomonas putida W619 ferritin Dps family protein YP_001750854.1 4427894 R 390235 CDS YP_001750855.1 170723167 6112972 4428649..4429242 1 NC_010501.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4100 cold shock protein; cold-shock DNA-binding domain-containing protein 4429242 6112972 PputW619_4006 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001750855.1 4428649 D 390235 CDS YP_001750856.1 170723168 6112973 complement(4429282..4429488) 1 NC_010501.1 PFAM: SlyX family protein; KEGG: pen:PSEEN4101 hypothetical protein; hypothetical protein 4429488 6112973 PputW619_4007 Pseudomonas putida W619 hypothetical protein YP_001750856.1 4429282 R 390235 CDS YP_001750857.1 170723169 6112974 complement(4429490..4429987) 1 NC_010501.1 PFAM: histidine triad (HIT) protein; KEGG: pen:PSEEN4102 hypothetical protein; histidine triad (HIT) protein 4429987 6112974 PputW619_4008 Pseudomonas putida W619 histidine triad (HIT) protein YP_001750857.1 4429490 R 390235 CDS YP_001750858.1 170723170 6112975 4430668..4431936 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 4431936 6112975 PputW619_4009 Pseudomonas putida W619 outer membrane porin YP_001750858.1 4430668 D 390235 CDS YP_001750859.1 170723171 6112976 4432097..4433812 1 NC_010501.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4433812 6112976 PputW619_4010 Pseudomonas putida W619 prolyl-tRNA synthetase YP_001750859.1 4432097 D 390235 CDS YP_001750860.1 170723172 6112977 4433833..4434786 1 NC_010501.1 KEGG: pen:PSEEN4106 lipoprotein; lipoprotein 4434786 6112977 PputW619_4011 Pseudomonas putida W619 lipoprotein YP_001750860.1 4433833 D 390235 CDS YP_001750861.1 170723173 6112978 complement(4434817..4435881) 1 NC_010501.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 4435881 6112978 PputW619_4012 Pseudomonas putida W619 DNA polymerase IV YP_001750861.1 4434817 R 390235 CDS YP_001750862.1 170723174 6112982 4436844..4439486 1 NC_010501.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: pen:PSEEN4110 hypothetical protein; hypothetical protein 4439486 6112982 PputW619_4013 Pseudomonas putida W619 hypothetical protein YP_001750862.1 4436844 D 390235 CDS YP_001750863.1 170723175 6112983 4439486..4440778 1 NC_010501.1 PFAM: virulence factor family protein; KEGG: pen:PSEEN4111 hypothetical protein; virulence factor family protein 4440778 6112983 PputW619_4014 Pseudomonas putida W619 virulence factor family protein YP_001750863.1 4439486 D 390235 CDS YP_001750864.1 170723176 6112984 complement(4440816..4442714) 1 NC_010501.1 PFAM: K potassium transporter; KEGG: pen:PSEEN4112 Kup system potassium uptake protein; K potassium transporter 4442714 6112984 PputW619_4015 Pseudomonas putida W619 K potassium transporter YP_001750864.1 4440816 R 390235 CDS YP_001750865.1 170723177 6112985 4442951..4444282 1 NC_010501.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4444282 rimO 6112985 rimO Pseudomonas putida W619 30S ribosomal protein S12 methylthiotransferase YP_001750865.1 4442951 D 390235 CDS YP_001750866.1 170723178 6112986 4444368..4444823 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4114 acyltransferase, GNAT family; N-acetyltransferase GCN5 4444823 6112986 PputW619_4017 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001750866.1 4444368 D 390235 CDS YP_001750867.1 170723179 6112987 4444897..4445655 1 NC_010501.1 PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN4116 hypothetical protein; RNA-binding S4 domain-containing protein 4445655 6112987 PputW619_4018 Pseudomonas putida W619 RNA-binding S4 domain-containing protein YP_001750867.1 4444897 D 390235 CDS YP_001750868.1 170723180 6112988 4445703..4446164 1 NC_010501.1 PFAM: protein of unknown function DUF1456; KEGG: pen:PSEEN4117 hypothetical protein; hypothetical protein 4446164 6112988 PputW619_4019 Pseudomonas putida W619 hypothetical protein YP_001750868.1 4445703 D 390235 CDS YP_001750869.1 170723181 6112989 4446171..4446866 1 NC_010501.1 PFAM: protein of unknown function UPF0066; KEGG: pen:PSEEN4118 hypothetical protein; hypothetical protein 4446866 6112989 PputW619_4020 Pseudomonas putida W619 hypothetical protein YP_001750869.1 4446171 D 390235 CDS YP_001750870.1 170723182 6112990 complement(4447114..4447893) 1 NC_010501.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4119 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 4447893 6112990 PputW619_4021 Pseudomonas putida W619 oxidoreductase FAD/NAD(P)-binding subunit YP_001750870.1 4447114 R 390235 CDS YP_001750871.1 170723183 6112991 4448011..4448937 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4120 transcriptional regulator, LysR family; LysR family transcriptional regulator 4448937 6112991 PputW619_4022 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750871.1 4448011 D 390235 CDS YP_001750872.1 170723184 6112992 complement(4448934..4449296) 1 NC_010501.1 PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase 4449296 6112992 PputW619_4023 Pseudomonas putida W619 diacylglycerol kinase YP_001750872.1 4448934 R 390235 CDS YP_001750873.1 170723185 6112993 complement(4449370..4450020) 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4122 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4450020 6112993 PputW619_4024 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001750873.1 4449370 R 390235 CDS YP_001750874.1 170723186 6112994 complement(4450199..4450909) 1 NC_010501.1 PFAM: DTW domain containing protein; KEGG: pen:PSEEN4123 hypothetical protein; DTW domain-containing protein 4450909 6112994 PputW619_4025 Pseudomonas putida W619 DTW domain-containing protein YP_001750874.1 4450199 R 390235 CDS YP_001750875.1 170723187 6112995 4451133..4451552 1 NC_010501.1 KEGG: pen:PSEEN4124 hypothetical protein; hypothetical protein 4451552 6112995 PputW619_4026 Pseudomonas putida W619 hypothetical protein YP_001750875.1 4451133 D 390235 CDS YP_001750876.1 170723188 6112996 complement(4451553..4451756) 1 NC_010501.1 KEGG: pen:PSEEN4125 hypothetical protein; hypothetical protein 4451756 6112996 PputW619_4027 Pseudomonas putida W619 hypothetical protein YP_001750876.1 4451553 R 390235 CDS YP_001750877.1 170723189 6112997 4452059..4453177 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4126 hypothetical protein; hypothetical protein 4453177 6112997 PputW619_4028 Pseudomonas putida W619 hypothetical protein YP_001750877.1 4452059 D 390235 CDS YP_001750878.1 170723190 6112998 complement(4453203..4453673) 1 NC_010501.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 4453673 recX 6112998 recX Pseudomonas putida W619 recombination regulator RecX YP_001750878.1 4453203 R 390235 CDS YP_001750879.1 170723191 6112999 complement(4453691..4454758) 1 NC_010501.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 4454758 recA 6112999 recA Pseudomonas putida W619 recombinase A YP_001750879.1 4453691 R 390235 CDS YP_001750880.1 170723192 6113000 complement(4454862..4455344) 1 NC_010501.1 PFAM: CinA domain protein; KEGG: pen:PSEEN4129 hypothetical protein; CinA domain-containing protein 4455344 6113000 PputW619_4031 Pseudomonas putida W619 CinA domain-containing protein YP_001750880.1 4454862 R 390235 CDS YP_001750881.1 170723193 6113001 complement(4455428..4455904) 1 NC_010501.1 KEGG: pen:PSEEN4130 phage protein; phage protein 4455904 6113001 PputW619_4032 Pseudomonas putida W619 phage protein YP_001750881.1 4455428 R 390235 CDS YP_001750882.1 170723194 6113002 complement(4455901..4456449) 1 NC_010501.1 PFAM: glycoside hydrolase family 19; KEGG: pen:PSEEN4131 pyocin R2_PP, lytic enzyme; glycoside hydrolase family protein 4456449 6113002 PputW619_4033 Pseudomonas putida W619 glycoside hydrolase family protein YP_001750882.1 4455901 R 390235 CDS YP_001750883.1 170723195 6113003 complement(4456477..4457511) 1 NC_010501.1 PFAM: late control D family protein; KEGG: pen:PSEEN4149 pyocin R2_PP, tail formation GpD; late control D family protein 4457511 6113003 PputW619_4034 Pseudomonas putida W619 late control D family protein YP_001750883.1 4456477 R 390235 CDS YP_001750884.1 170723196 6113004 complement(4457516..4457722) 1 NC_010501.1 PFAM: tail X family protein; KEGG: pfl:PFL_2015 tail protein X-related protein; tail X family protein 4457722 6113004 PputW619_4035 Pseudomonas putida W619 tail X family protein YP_001750884.1 4457516 R 390235 CDS YP_001750885.1 170723197 6113005 complement(4457697..4458542) 1 NC_010501.1 PFAM: P2 GpU family protein; KEGG: pen:PSEEN4151 pyocin R2_PP, tail formation protein gpU; P2 GpU family protein 4458542 6113005 PputW619_4036 Pseudomonas putida W619 P2 GpU family protein YP_001750885.1 4457697 R 390235 CDS YP_001750886.1 170723198 6113006 complement(4458552..4460405) 1 NC_010501.1 KEGG: pen:PSEEN4152 pyocin R2_PP, tail length determination protein; pyocin R2_PP, tail length determination protein 4460405 6113006 PputW619_4037 Pseudomonas putida W619 pyocin R2_PP, tail length determination protein YP_001750886.1 4458552 R 390235 CDS YP_001750887.1 170723199 6113007 complement(4460530..4460832) 1 NC_010501.1 KEGG: pen:PSEEN4153 hypothetical protein; hypothetical protein 4460832 6113007 PputW619_4038 Pseudomonas putida W619 hypothetical protein YP_001750887.1 4460530 R 390235 CDS YP_001750888.1 170723200 6113008 complement(4460843..4461352) 1 NC_010501.1 TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pen:PSEEN4154 pyocin R2_PP, tail tube protein GpFII; phage major tail tube protein 4461352 6113008 PputW619_4039 Pseudomonas putida W619 phage major tail tube protein YP_001750888.1 4460843 R 390235 CDS YP_001750889.1 170723201 6113009 complement(4461366..4462532) 1 NC_010501.1 PFAM: tail sheath protein; KEGG: pen:PSEEN4155 pyocin R2_PP, tail sheath protein gpFI; tail sheath protein 4462532 6113009 PputW619_4040 Pseudomonas putida W619 tail sheath protein YP_001750889.1 4461366 R 390235 CDS YP_001750890.1 170723202 6113010 complement(4462602..4463051) 1 NC_010501.1 KEGG: pae:PA0621 hypothetical protein; hypothetical protein 4463051 6113010 PputW619_4041 Pseudomonas putida W619 hypothetical protein YP_001750890.1 4462602 R 390235 CDS YP_001750891.1 170723203 6113011 complement(4463055..4465199) 1 NC_010501.1 KEGG: pst:PSPTO_3398 tail fiber protein H, putative; Phage-related tail fiber protein-like protein 4465199 6113011 PputW619_4042 Pseudomonas putida W619 Phage-related tail fiber protein-like protein YP_001750891.1 4463055 R 390235 CDS YP_001750892.1 170723204 6113012 complement(4465192..4465800) 1 NC_010501.1 TIGRFAM: phage tail protein I; PFAM: Inorganic pyrophosphatase; KEGG: pen:PSEEN4160 pyocin R2_PP, tail formation protein GpI; phage tail protein I 4465800 6113012 PputW619_4043 Pseudomonas putida W619 phage tail protein I YP_001750892.1 4465192 R 390235 CDS YP_001750893.1 170723205 6113013 complement(4465802..4466683) 1 NC_010501.1 PFAM: Baseplate J family protein; KEGG: pen:PSEEN4161 pyocin R2_PP, baseplate/tail fiber protein; baseplate J family protein 4466683 6113013 PputW619_4044 Pseudomonas putida W619 baseplate J family protein YP_001750893.1 4465802 R 390235 CDS YP_001750894.1 170723206 6113014 complement(4466680..4467006) 1 NC_010501.1 PFAM: GPW/gp25 family protein; KEGG: pen:PSEEN4162 pyocin R2_PP, baseplate protein; GPW/gp25 family protein 4467006 6113014 PputW619_4045 Pseudomonas putida W619 GPW/gp25 family protein YP_001750894.1 4466680 R 390235 CDS YP_001750895.1 170723207 6113015 complement(4467094..4467654) 1 NC_010501.1 TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: pen:PSEEN4163 pyocin R2_PP, tail spike protein; phage baseplate assembly protein V 4467654 6113015 PputW619_4046 Pseudomonas putida W619 phage baseplate assembly protein V YP_001750895.1 4467094 R 390235 CDS YP_001750896.1 170723208 6113016 complement(4467651..4468148) 1 NC_010501.1 KEGG: pen:PSEEN4164 phage protein; phage protein 4468148 6113016 PputW619_4047 Pseudomonas putida W619 phage protein YP_001750896.1 4467651 R 390235 CDS YP_001750897.1 170723209 6113017 complement(4468162..4468497) 1 NC_010501.1 KEGG: pen:PSEEN4184 pyocin R2_PP, holin; pyocin R2_PP, holin 4468497 6113017 PputW619_4048 Pseudomonas putida W619 pyocin R2_PP, holin YP_001750897.1 4468162 R 390235 CDS YP_001750898.1 170723210 6113018 complement(4468972..4469718) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN4186 transcriptional regulator; putative phage repressor 4469718 6113018 PputW619_4049 Pseudomonas putida W619 putative phage repressor YP_001750898.1 4468972 R 390235 CDS YP_001750899.1 170723211 6113019 4469858..4472431 1 NC_010501.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 4472431 6113019 PputW619_4050 Pseudomonas putida W619 DNA mismatch repair protein MutS YP_001750899.1 4469858 D 390235 CDS YP_001750900.1 170723212 6113020 4472572..4472895 1 NC_010501.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN4188 ferredoxin; 4Fe-4S ferredoxin 4472895 6113020 PputW619_4051 Pseudomonas putida W619 4Fe-4S ferredoxin YP_001750900.1 4472572 D 390235 CDS YP_001750901.1 170723213 6113021 complement(4473399..4474406) 1 NC_010501.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 4474406 6113021 PputW619_4052 Pseudomonas putida W619 RNA polymerase sigma factor RpoS YP_001750901.1 4473399 R 390235 CDS YP_001750902.1 170723214 6113022 complement(4474515..4475372) 1 NC_010501.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pen:PSEEN4190 peptidase M23B; peptidase M23B 4475372 6113022 PputW619_4053 Pseudomonas putida W619 peptidase M23B YP_001750902.1 4474515 R 390235 CDS YP_001750903.1 170723215 6113023 complement(4475559..4476236) 1 NC_010501.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 4476236 pcm 6113023 pcm Pseudomonas putida W619 protein-L-isoaspartate O-methyltransferase YP_001750903.1 4475559 R 390235 CDS YP_001750904.1 170723216 6113024 complement(4476236..4476985) 1 NC_010501.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 4476985 surE 6113024 surE Pseudomonas putida W619 stationary phase survival protein SurE YP_001750904.1 4476236 R 390235 CDS YP_001750905.1 170723217 6113025 complement(4476973..4478031) 1 NC_010501.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 4478031 truD 6113025 truD Pseudomonas putida W619 tRNA pseudouridine synthase D YP_001750905.1 4476973 R 390235 CDS YP_001750906.1 170723218 6113026 complement(4478028..4478501) 1 NC_010501.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4478501 ispF 6113026 ispF Pseudomonas putida W619 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001750906.1 4478028 R 390235 CDS YP_001750907.1 170723219 6113027 complement(4478646..4479500) 1 NC_010501.1 KEGG: pen:PSEEN4195 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 4479500 6113027 PputW619_4058 Pseudomonas putida W619 S-formylglutathione hydrolase YP_001750907.1 4478646 R 390235 CDS YP_001750908.1 170723220 6113028 complement(4479509..4480621) 1 NC_010501.1 TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN4196 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 4480621 6113028 PputW619_4059 Pseudomonas putida W619 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_001750908.1 4479509 R 390235 CDS YP_001750909.1 170723221 6113029 4480729..4481625 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4197 transcriptional regulator, LysR family; LysR family transcriptional regulator 4481625 6113029 PputW619_4060 Pseudomonas putida W619 LysR family transcriptional regulator YP_001750909.1 4480729 D 390235 CDS YP_001750910.1 170723222 6113030 complement(4481763..4482470) 1 NC_010501.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4482470 ispD 6113030 ispD Pseudomonas putida W619 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001750910.1 4481763 R 390235 CDS YP_001750911.1 170723223 6113031 complement(4482467..4482748) 1 NC_010501.1 PFAM: Septum formation initiator; KEGG: pen:PSEEN4199 cell division protein FtsB-like; septum formation initiator 4482748 6113031 PputW619_4062 Pseudomonas putida W619 septum formation initiator YP_001750911.1 4482467 R 390235 CDS YP_001750912.1 170723224 6113032 complement(4482911..4484200) 1 NC_010501.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 4484200 eno 6113032 eno Pseudomonas putida W619 phosphopyruvate hydratase YP_001750912.1 4482911 R 390235 CDS YP_001750913.1 170723225 6113033 complement(4484396..4486024) 1 NC_010501.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 4486024 pyrG 6113033 pyrG Pseudomonas putida W619 CTP synthetase YP_001750913.1 4484396 R 390235 CDS YP_001750914.1 170723226 6113034 complement(4486294..4487574) 1 NC_010501.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: pen:PSEEN4203 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 4487574 6113034 PputW619_4065 Pseudomonas putida W619 tRNA(Ile)-lysidine synthetase YP_001750914.1 4486294 R 390235 CDS YP_001750915.1 170723227 6113035 complement(4487630..4488583) 1 NC_010501.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 4488583 6113035 PputW619_4066 Pseudomonas putida W619 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001750915.1 4487630 R 390235 CDS YP_001750916.1 170723228 6113036 complement(4488683..4492207) 1 NC_010501.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 4492207 dnaE 6113036 dnaE Pseudomonas putida W619 DNA polymerase III subunit alpha YP_001750916.1 4488683 R 390235 CDS YP_001750917.1 170723229 6113037 complement(4492297..4492920) 1 NC_010501.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 4492920 rnhB 6113037 rnhB Pseudomonas putida W619 ribonuclease HII YP_001750917.1 4492297 R 390235 CDS YP_001750918.1 170723230 6113038 complement(4492922..4494049) 1 NC_010501.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 4494049 lpxB 6113038 lpxB Pseudomonas putida W619 lipid-A-disaccharide synthase YP_001750918.1 4492922 R 390235 CDS YP_001750919.1 170723231 6113039 complement(4494051..4494827) 1 NC_010501.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 4494827 6113039 PputW619_4070 Pseudomonas putida W619 UDP-N-acetylglucosamine acyltransferase YP_001750919.1 4494051 R 390235 CDS YP_001750920.1 170723232 6113040 complement(4494824..4495264) 1 NC_010501.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 4495264 fabZ 6113040 fabZ Pseudomonas putida W619 (3R)-hydroxymyristoyl-ACP dehydratase YP_001750920.1 4494824 R 390235 CDS YP_001750921.1 170723233 6113041 complement(4495378..4496433) 1 NC_010501.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 4496433 lpxD 6113041 lpxD Pseudomonas putida W619 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001750921.1 4495378 R 390235 CDS YP_001750922.1 170723234 6113042 complement(4496435..4496938) 1 NC_010501.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pen:PSEEN4211 outer membrane protein OmpH-like; outer membrane chaperone Skp 4496938 6113042 PputW619_4073 Pseudomonas putida W619 outer membrane chaperone Skp YP_001750922.1 4496435 R 390235 CDS YP_001750923.1 170723235 6113043 complement(4496983..4499337) 1 NC_010501.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN4212 outer membrane protein, bacterial surface antigen family; outer membrane protein assembly complex, YaeT protein 4499337 6113043 PputW619_4074 Pseudomonas putida W619 outer membrane protein assembly complex, YaeT protein YP_001750923.1 4496983 R 390235 CDS YP_001750924.1 170723236 6113044 complement(4499408..4500760) 1 NC_010501.1 KEGG: pen:PSEEN4213 membrane-associated Zn-dependent proteases 1; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 4500760 6113044 PputW619_4075 Pseudomonas putida W619 membrane-associated zinc metalloprotease YP_001750924.1 4499408 R 390235 CDS YP_001750925.1 170723237 6113045 complement(4500822..4502012) 1 NC_010501.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4502012 6113045 PputW619_4076 Pseudomonas putida W619 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001750925.1 4500822 R 390235 CDS YP_001750926.1 170723238 6113046 complement(4502009..4502824) 1 NC_010501.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pen:PSEEN4215 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 4502824 6113046 PputW619_4077 Pseudomonas putida W619 phosphatidate cytidylyltransferase YP_001750926.1 4502009 R 390235 CDS YP_001750927.1 170723239 6113047 complement(4502824..4503579) 1 NC_010501.1 KEGG: pen:PSEEN4216 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 4503579 6113047 PputW619_4078 Pseudomonas putida W619 undecaprenyl diphosphate synthase YP_001750927.1 4502824 R 390235 CDS YP_001750928.1 170723240 6113048 complement(4503595..4504152) 1 NC_010501.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 4504152 frr 6113048 frr Pseudomonas putida W619 ribosome recycling factor YP_001750928.1 4503595 R 390235 CDS YP_001750929.1 170723241 6113049 complement(4504149..4504892) 1 NC_010501.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 4504892 pyrH 6113049 pyrH Pseudomonas putida W619 uridylate kinase YP_001750929.1 4504149 R 390235 CDS YP_001750930.1 170723242 6113050 complement(4505069..4505932) 1 NC_010501.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 4505932 tsf 6113050 tsf Pseudomonas putida W619 elongation factor Ts YP_001750930.1 4505069 R 390235 CDS YP_001750931.1 170723243 6113051 complement(4506118..4506855) 1 NC_010501.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 4506855 rpsB 6113051 rpsB Pseudomonas putida W619 30S ribosomal protein S2 YP_001750931.1 4506118 R 390235 CDS YP_001750932.1 170723244 6113052 4507160..4507942 1 NC_010501.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 4507942 6113052 PputW619_4083 Pseudomonas putida W619 methionine aminopeptidase YP_001750932.1 4507160 D 390235 CDS YP_001750933.1 170723245 6113053 4507979..4510681 1 NC_010501.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 4510681 glnD 6113053 glnD Pseudomonas putida W619 PII uridylyl-transferase YP_001750933.1 4507979 D 390235 CDS YP_001750934.1 170723246 6113054 4510712..4511908 1 NC_010501.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 4511908 6113054 PputW619_4085 Pseudomonas putida W619 succinyldiaminopimelate transaminase YP_001750934.1 4510712 D 390235 CDS YP_001750935.1 170723247 6113055 complement(4511969..4513615) 1 NC_010501.1 TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4225 sodium:hydrogen antiporter (CPA1 family); Na+/H+ antiporter 4513615 6113055 PputW619_4086 Pseudomonas putida W619 Na+/H+ antiporter YP_001750935.1 4511969 R 390235 CDS YP_001750936.1 170723248 6113056 4513840..4514139 1 NC_010501.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_0214 virulence-associated protein, putative; XRE family plasmid maintenance system antidote protein 4514139 6113056 PputW619_4087 Pseudomonas putida W619 XRE family plasmid maintenance system antidote protein YP_001750936.1 4513840 D 390235 CDS YP_001750937.1 170723249 6113057 4514246..4514611 1 NC_010501.1 PFAM: arsenate reductase and related; KEGG: pen:PSEEN4226 hypothetical protein; arsenate reductase-like protein 4514611 6113057 PputW619_4088 Pseudomonas putida W619 arsenate reductase-like protein YP_001750937.1 4514246 D 390235 CDS YP_001750938.1 170723250 6113058 4514654..4515688 1 NC_010501.1 KEGG: pen:PSEEN4227 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 4515688 6113058 PputW619_4089 Pseudomonas putida W619 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001750938.1 4514654 D 390235 CDS YP_001750939.1 170723251 6113059 4515771..4516976 1 NC_010501.1 PFAM: aminotransferase class V; KEGG: pen:PSEEN4228 cysteine sulfinate desulfinase; class V aminotransferase 4516976 6113059 PputW619_4090 Pseudomonas putida W619 class V aminotransferase YP_001750939.1 4515771 D 390235 CDS YP_001750940.1 170723252 6113060 4516973..4517383 1 NC_010501.1 PFAM: Fe-S metabolism associated SufE; KEGG: pen:PSEEN4229 hypothetical protein; Fe-S metabolism associated SufE 4517383 6113060 PputW619_4091 Pseudomonas putida W619 Fe-S metabolism associated SufE YP_001750940.1 4516973 D 390235 CDS YP_001750941.1 170723253 6113061 complement(4517405..4518214) 1 NC_010501.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pen:PSEEN4230 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 4518214 6113061 PputW619_4092 Pseudomonas putida W619 UBA/THIF-type NAD/FAD binding protein YP_001750941.1 4517405 R 390235 CDS YP_001750942.1 170723254 6113062 4518347..4520938 1 NC_010501.1 PFAM: glycoside hydrolase family 17; glycosyl transferase family 2; KEGG: pen:PSEEN4231 glycosyl transferase; glycosyl transferase family protein 4520938 6113062 PputW619_4093 Pseudomonas putida W619 glycosyl transferase family protein YP_001750942.1 4518347 D 390235 CDS YP_001750943.1 170723255 6113063 4521044..4522195 1 NC_010501.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 4522195 6113063 PputW619_4094 Pseudomonas putida W619 succinyl-diaminopimelate desuccinylase YP_001750943.1 4521044 D 390235 CDS YP_001750944.1 170723256 6113064 4522195..4523007 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4233 23S rRNA m1G745 methyltransferase RrmA; rRNA (guanine-N(1)-)-methyltransferase 4523007 6113064 PputW619_4095 Pseudomonas putida W619 rRNA (guanine-N(1)-)-methyltransferase YP_001750944.1 4522195 D 390235 CDS YP_001750945.1 170723257 6113065 4523025..4523402 1 NC_010501.1 KEGG: pen:PSEEN4234 hypothetical protein; hypothetical protein 4523402 6113065 PputW619_4096 Pseudomonas putida W619 hypothetical protein YP_001750945.1 4523025 D 390235 CDS YP_001750946.1 170723258 6113066 complement(4523502..4523711) 1 NC_010501.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4235 cold shock protein CspE-like; cold-shock DNA-binding domain-containing protein 4523711 6113066 PputW619_4097 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001750946.1 4523502 R 390235 CDS YP_001750947.1 170723259 6113067 4523943..4526429 1 NC_010501.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4526429 6113067 PputW619_4098 Pseudomonas putida W619 glycerol-3-phosphate acyltransferase YP_001750947.1 4523943 D 390235 CDS YP_001750948.1 170723260 6113068 4526505..4526903 1 NC_010501.1 KEGG: pen:PSEEN4238 lipoprotein; lipoprotein 4526903 6113068 PputW619_4099 Pseudomonas putida W619 lipoprotein YP_001750948.1 4526505 D 390235 CDS YP_001750949.1 170723261 6113069 4526937..4527626 1 NC_010501.1 KEGG: pen:PSEEN4239 hypothetical protein; hypothetical protein 4527626 6113069 PputW619_4100 Pseudomonas putida W619 hypothetical protein YP_001750949.1 4526937 D 390235 CDS YP_001750950.1 170723262 6113070 complement(4527663..4530728) 1 NC_010501.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4240 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 4530728 6113070 PputW619_4101 Pseudomonas putida W619 acriflavin resistance protein YP_001750950.1 4527663 R 390235 CDS YP_001750951.1 170723263 6113071 complement(4530735..4531835) 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 4531835 6113071 PputW619_4102 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001750951.1 4530735 R 390235 CDS YP_001750952.1 170723264 6113072 4532017..4532646 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN4243 transcriptional regulator, TetR family; TetR family transcriptional regulator 4532646 6113072 PputW619_4103 Pseudomonas putida W619 TetR family transcriptional regulator YP_001750952.1 4532017 D 390235 CDS YP_001750953.1 170723265 6113073 complement(4532702..4533478) 1 NC_010501.1 PFAM: protein of unknown function DUF548; KEGG: pen:PSEEN1271 hypothetical protein; hypothetical protein 4533478 6113073 PputW619_4104 Pseudomonas putida W619 hypothetical protein YP_001750953.1 4532702 R 390235 CDS YP_001750954.1 170723266 6113074 4533583..4534203 1 NC_010501.1 KEGG: pen:PSEEN1270 hypothetical protein; hypothetical protein 4534203 6113074 PputW619_4105 Pseudomonas putida W619 hypothetical protein YP_001750954.1 4533583 D 390235 CDS YP_001750955.1 170723267 6113075 complement(4534206..4534880) 1 NC_010501.1 PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein; extensin family protein 4534880 6113075 PputW619_4106 Pseudomonas putida W619 extensin family protein YP_001750955.1 4534206 R 390235 CDS YP_001750956.1 170723268 6113076 complement(4534899..4535729) 1 NC_010501.1 KEGG: pen:PSEEN1269 carboxyvinyl-carboxyphosphonate phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase 4535729 6113076 PputW619_4107 Pseudomonas putida W619 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_001750956.1 4534899 R 390235 CDS YP_001750957.1 170723269 6113077 complement(4535759..4536628) 1 NC_010501.1 PFAM: protein of unknown function DUF72; KEGG: pen:PSEEN1268 hypothetical protein; hypothetical protein 4536628 6113077 PputW619_4108 Pseudomonas putida W619 hypothetical protein YP_001750957.1 4535759 R 390235 CDS YP_001750958.1 170723270 6113078 complement(4536632..4536919) 1 NC_010501.1 KEGG: pen:PSEEN1267 hypothetical protein; hypothetical protein 4536919 6113078 PputW619_4109 Pseudomonas putida W619 hypothetical protein YP_001750958.1 4536632 R 390235 CDS YP_001750959.1 170723271 6113079 complement(4537049..4537723) 1 NC_010501.1 PFAM: peptidase M22 glycoprotease; KEGG: pen:PSEEN1266 glycoprotein endopeptidase metalloprotease; peptidase M22 glycoprotease 4537723 6113079 PputW619_4110 Pseudomonas putida W619 peptidase M22 glycoprotease YP_001750959.1 4537049 R 390235 CDS YP_001750960.1 170723272 6113080 complement(4537811..4538461) 1 NC_010501.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 4538461 adk 6113080 adk Pseudomonas putida W619 adenylate kinase YP_001750960.1 4537811 R 390235 CDS YP_001750961.1 170723273 6113081 complement(4538719..4541346) 1 NC_010501.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4541346 6113081 PputW619_4112 Pseudomonas putida W619 phosphoenolpyruvate carboxylase YP_001750961.1 4538719 R 390235 CDS YP_001750962.1 170723274 6113082 4541517..4541861 1 NC_010501.1 KEGG: pen:PSEEN1263 hypothetical protein; hypothetical protein 4541861 6113082 PputW619_4113 Pseudomonas putida W619 hypothetical protein YP_001750962.1 4541517 D 390235 CDS YP_001750963.1 170723275 6113083 4542133..4542546 1 NC_010501.1 KEGG: pen:PSEEN1262 hypothetical protein; hypothetical protein 4542546 6113083 PputW619_4114 Pseudomonas putida W619 hypothetical protein YP_001750963.1 4542133 D 390235 CDS YP_001750964.1 170723276 6113084 4542597..4543385 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1261 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein 4543385 6113084 PputW619_4115 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001750964.1 4542597 D 390235 CDS YP_001750965.1 170723277 6113085 complement(4543458..4543784) 1 NC_010501.1 KEGG: pen:PSEEN1260 hypothetical protein; hypothetical protein 4543784 6113085 PputW619_4116 Pseudomonas putida W619 hypothetical protein YP_001750965.1 4543458 R 390235 CDS YP_001750966.1 170723278 6113086 complement(4543781..4544704) 1 NC_010501.1 KEGG: pen:PSEEN1259 lipoprotein; lipoprotein 4544704 6113086 PputW619_4117 Pseudomonas putida W619 lipoprotein YP_001750966.1 4543781 R 390235 CDS YP_001750967.1 170723279 6113087 complement(4544676..4545953) 1 NC_010501.1 PFAM: protein of unknown function DUF1704; KEGG: pen:PSEEN1258 hypothetical protein; hypothetical protein 4545953 6113087 PputW619_4118 Pseudomonas putida W619 hypothetical protein YP_001750967.1 4544676 R 390235 CDS YP_001750968.1 170723280 6113088 complement(4546008..4546556) 1 NC_010501.1 KEGG: pen:PSEEN1257 lipoprotein; lipoprotein 4546556 6113088 PputW619_4119 Pseudomonas putida W619 lipoprotein YP_001750968.1 4546008 R 390235 CDS YP_001750969.1 170723281 6113089 complement(4546586..4547290) 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN1256 transcriptional regulator, TetR family; TetR family transcriptional regulator 4547290 6113089 PputW619_4120 Pseudomonas putida W619 TetR family transcriptional regulator YP_001750969.1 4546586 R 390235 CDS YP_001750970.1 170723282 6113090 complement(4547434..4548936) 1 NC_010501.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 4548936 lysS 6113090 lysS Pseudomonas putida W619 lysyl-tRNA synthetase YP_001750970.1 4547434 R 390235 CDS YP_001750971.1 170723283 6113091 complement(4549026..4549940) 1 NC_010501.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pen:PSEEN1254 peptide chain release factor 2; peptide chain release factor 2 4549940 6113091 PputW619_4122 Pseudomonas putida W619 peptide chain release factor 2 YP_001750971.1 4549026 R 390235 CDS YP_001750972.1 170723284 6113092 4550332..4550727 1 NC_010501.1 hypothetical protein 4550727 6113092 PputW619_4123 Pseudomonas putida W619 hypothetical protein YP_001750972.1 4550332 D 390235 CDS YP_001750973.1 170723285 6113093 complement(4550768..4551772) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN1251 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase 4551772 6113093 PputW619_4124 Pseudomonas putida W619 response regulator receiver modulated diguanylate cyclase YP_001750973.1 4550768 R 390235 CDS YP_001750974.1 170723286 6113094 complement(4551824..4552837) 1 NC_010501.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 4552837 6113094 PputW619_4125 Pseudomonas putida W619 chemotaxis-specific methylesterase YP_001750974.1 4551824 R 390235 CDS YP_001750975.1 170723287 6113095 complement(4552834..4555101) 1 NC_010501.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN1249 sensor histidine kinase/response regulator hybrid; CheA signal transduction histidine kinase 4555101 6113095 PputW619_4126 Pseudomonas putida W619 CheA signal transduction histidine kinase YP_001750975.1 4552834 R 390235 CDS YP_001750976.1 170723288 6113096 complement(4555098..4555763) 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN1248 chemotaxis signal transduction protein; CheW domain protein; CheW protein 4555763 6113096 PputW619_4127 Pseudomonas putida W619 CheW protein YP_001750976.1 4555098 R 390235 CDS YP_001750977.1 170723289 6113097 complement(4555760..4557004) 1 NC_010501.1 PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN1247 methyltransferase, CheR-like; CheR-type MCP methyltransferase 4557004 6113097 PputW619_4128 Pseudomonas putida W619 CheR-type MCP methyltransferase YP_001750977.1 4555760 R 390235 CDS YP_001750978.1 170723290 6113098 complement(4557001..4557507) 1 NC_010501.1 PFAM: CheW domain protein; KEGG: pen:PSEEN1246 chemotaxis signal transduction protein; CheW domain protein; CheW protein 4557507 6113098 PputW619_4129 Pseudomonas putida W619 CheW protein YP_001750978.1 4557001 R 390235 CDS YP_001750979.1 170723291 6113099 complement(4557513..4559135) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1245 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4559135 6113099 PputW619_4130 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001750979.1 4557513 R 390235 CDS YP_001750980.1 170723292 6113100 complement(4559265..4559951) 1 NC_010501.1 PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN1243 hypothetical protein; hypothetical protein 4559951 6113100 PputW619_4131 Pseudomonas putida W619 hypothetical protein YP_001750980.1 4559265 R 390235 CDS YP_001750981.1 170723293 6113101 4560156..4561307 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1242 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 4561307 6113101 PputW619_4132 Pseudomonas putida W619 extracellular solute-binding protein YP_001750981.1 4560156 D 390235 CDS YP_001750982.1 170723294 6113102 4561423..4562463 1 NC_010501.1 KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4562463 6113102 PputW619_4133 Pseudomonas putida W619 spermidine/putrescine ABC transporter ATPase YP_001750982.1 4561423 D 390235 CDS YP_001750983.1 170723295 6113103 4562465..4563388 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1240 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4563388 6113103 PputW619_4134 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750983.1 4562465 D 390235 CDS YP_001750984.1 170723296 6113104 4563378..4564184 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1239 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4564184 6113104 PputW619_4135 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001750984.1 4563378 D 390235 CDS YP_001750985.1 170723297 6113105 4564202..4565626 1 NC_010501.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 4565626 6113105 PputW619_4136 Pseudomonas putida W619 gamma-aminobutyraldehyde dehydrogenase YP_001750985.1 4564202 D 390235 CDS YP_001750986.1 170723298 6113106 4565843..4566049 1 NC_010501.1 KEGG: pen:PSEEN1237 hypothetical protein; hypothetical protein 4566049 6113106 PputW619_4137 Pseudomonas putida W619 hypothetical protein YP_001750986.1 4565843 D 390235 CDS YP_001750987.1 170723299 6113107 4566046..4566378 1 NC_010501.1 PFAM: HicB family protein; KEGG: pen:PSEEN1236 hypothetical protein; HicB family protein 4566378 6113107 PputW619_4138 Pseudomonas putida W619 HicB family protein YP_001750987.1 4566046 D 390235 CDS YP_001750988.1 170723300 6113108 complement(4566388..4567494) 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1235 oxidireductase; NADH:flavin oxidoreductase 4567494 6113108 PputW619_4139 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001750988.1 4566388 R 390235 CDS YP_001750989.1 170723301 6113109 4567947..4568228 1 NC_010501.1 hypothetical protein 4568228 6113109 PputW619_4140 Pseudomonas putida W619 hypothetical protein YP_001750989.1 4567947 D 390235 CDS YP_001750990.1 170723302 6113110 4568372..4568509 1 NC_010501.1 hypothetical protein 4568509 6113110 PputW619_4141 Pseudomonas putida W619 hypothetical protein YP_001750990.1 4568372 D 390235 CDS YP_001750991.1 170723303 6113111 complement(4568515..4570224) 1 NC_010501.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pen:PSEEN4244 ssDNA specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 4570224 6113111 PputW619_4142 Pseudomonas putida W619 single-stranded-DNA-specific exonuclease RecJ YP_001750991.1 4568515 R 390235 CDS YP_001750992.1 170723304 6113112 complement(4570237..4570779) 1 NC_010501.1 PFAM: YaeQ family protein; KEGG: psb:Psyr_1297 YaeQ; YaeQ family protein 4570779 6113112 PputW619_4143 Pseudomonas putida W619 YaeQ family protein YP_001750992.1 4570237 R 390235 CDS YP_001750993.1 170723305 6113113 4570912..4572111 1 NC_010501.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN4246 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 4572111 6113113 PputW619_4144 Pseudomonas putida W619 L-carnitine dehydratase/bile acid-inducible protein F YP_001750993.1 4570912 D 390235 CDS YP_001750994.1 170723306 6113114 4572126..4572986 1 NC_010501.1 KEGG: pen:PSEEN4247 hypothetical protein; hypothetical protein 4572986 6113114 PputW619_4145 Pseudomonas putida W619 hypothetical protein YP_001750994.1 4572126 D 390235 CDS YP_001750995.1 170723307 6113115 complement(4573115..4573396) 1 NC_010501.1 KEGG: pen:PSEEN4248 hypothetical protein; hypothetical protein 4573396 6113115 PputW619_4146 Pseudomonas putida W619 hypothetical protein YP_001750995.1 4573115 R 390235 CDS YP_001750996.1 170723308 6113116 complement(4573476..4573874) 1 NC_010501.1 KEGG: pen:PSEEN4249 hypothetical protein; hypothetical protein 4573874 6113116 PputW619_4147 Pseudomonas putida W619 hypothetical protein YP_001750996.1 4573476 R 390235 CDS YP_001750997.1 170723309 6113117 complement(4574001..4575410) 1 NC_010501.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 4575410 6113117 PputW619_4148 Pseudomonas putida W619 threonine synthase YP_001750997.1 4574001 R 390235 CDS YP_001750998.1 170723310 6113118 complement(4575576..4576880) 1 NC_010501.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 4576880 6113118 PputW619_4149 Pseudomonas putida W619 homoserine dehydrogenase YP_001750998.1 4575576 R 390235 CDS YP_001750999.1 170723311 6113119 complement(4576963..4577724) 1 NC_010501.1 KEGG: pen:PSEEN4253 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 4577724 6113119 PputW619_4150 Pseudomonas putida W619 thiol:disulfide interchange protein DsbC YP_001750999.1 4576963 R 390235 CDS YP_001751000.1 170723312 6113120 complement(4577877..4578773) 1 NC_010501.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 4578773 xerD 6113120 xerD Pseudomonas putida W619 site-specific tyrosine recombinase XerD YP_001751000.1 4577877 R 390235 CDS YP_001751001.1 170723313 6113121 4578842..4580668 1 NC_010501.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 4580668 6113121 PputW619_4152 Pseudomonas putida W619 sodium/hydrogen exchanger YP_001751001.1 4578842 D 390235 CDS YP_001751002.1 170723314 6113122 complement(4580673..4581080) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4256 long-chain acyl-CoA thioester hydrolase; thioesterase superfamily protein 4581080 6113122 PputW619_4153 Pseudomonas putida W619 thioesterase superfamily protein YP_001751002.1 4580673 R 390235 CDS YP_001751003.1 170723315 6113123 complement(4581175..4581525) 1 NC_010501.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 4581525 rplS 6113123 rplS Pseudomonas putida W619 50S ribosomal protein L19 YP_001751003.1 4581175 R 390235 CDS YP_001751004.1 170723316 6113124 complement(4581568..4582320) 1 NC_010501.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 4582320 trmD 6113124 trmD Pseudomonas putida W619 tRNA (guanine-N(1)-)-methyltransferase YP_001751004.1 4581568 R 390235 CDS YP_001751005.1 170723317 6113125 complement(4582324..4582860) 1 NC_010501.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 4582860 rimM 6113125 rimM Pseudomonas putida W619 16S rRNA-processing protein RimM YP_001751005.1 4582324 R 390235 CDS YP_001751006.1 170723318 6113126 complement(4582866..4583117) 1 NC_010501.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 4583117 rpsP 6113126 rpsP Pseudomonas putida W619 30S ribosomal protein S16 YP_001751006.1 4582866 R 390235 CDS YP_001751007.1 170723319 6113127 complement(4583353..4584729) 1 NC_010501.1 KEGG: pen:PSEEN4261 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 4584729 6113127 PputW619_4158 Pseudomonas putida W619 signal recognition particle protein YP_001751007.1 4583353 R 390235 CDS YP_001751008.1 170723320 6113128 4585025..4585834 1 NC_010501.1 PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN4262 cytochrome c assembly protein; cytochrome c assembly protein 4585834 6113128 PputW619_4159 Pseudomonas putida W619 cytochrome c assembly protein YP_001751008.1 4585025 D 390235 CDS YP_001751009.1 170723321 6113129 4585844..4587049 1 NC_010501.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN4263 hypothetical protein; transporter-associated protein 4587049 6113129 PputW619_4160 Pseudomonas putida W619 transporter-associated protein YP_001751009.1 4585844 D 390235 CDS YP_001751010.1 170723322 6113130 4587329..4588630 1 NC_010501.1 TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4264 citrate-proton symporter (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 4588630 6113130 PputW619_4161 Pseudomonas putida W619 major facilitator superfamily metabolite/H(+) symporter YP_001751010.1 4587329 D 390235 CDS YP_001751011.1 170723323 6113131 complement(4588708..4589889) 1 NC_010501.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 4589889 purT 6113131 purT Pseudomonas putida W619 phosphoribosylglycinamide formyltransferase 2 YP_001751011.1 4588708 R 390235 CDS YP_001751012.1 170723324 6113132 complement(4589966..4590433) 1 NC_010501.1 PFAM: protein of unknown function DUF165; KEGG: pen:PSEEN4266 hypothetical protein; hypothetical protein 4590433 6113132 PputW619_4163 Pseudomonas putida W619 hypothetical protein YP_001751012.1 4589966 R 390235 CDS YP_001751013.1 170723325 6113133 complement(4590493..4590693) 1 NC_010501.1 PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN4267 hypothetical protein; hypothetical protein 4590693 6113133 PputW619_4164 Pseudomonas putida W619 hypothetical protein YP_001751013.1 4590493 R 390235 CDS YP_001751014.1 170723326 6113134 complement(4590686..4591210) 1 NC_010501.1 KEGG: pen:PSEEN4268 transferase family protein; transferase 4591210 6113134 PputW619_4165 Pseudomonas putida W619 transferase YP_001751014.1 4590686 R 390235 CDS YP_001751015.1 170723327 6113135 complement(4591252..4591851) 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4269 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 4591851 6113135 PputW619_4166 Pseudomonas putida W619 NUDIX hydrolase YP_001751015.1 4591252 R 390235 CDS YP_001751016.1 170723328 6113136 4591978..4592529 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4270 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 4592529 6113136 PputW619_4167 Pseudomonas putida W619 NUDIX hydrolase YP_001751016.1 4591978 D 390235 CDS YP_001751017.1 170723329 6113137 4592548..4593102 1 NC_010501.1 KEGG: pen:PSEEN4271 hypothetical protein; hypothetical protein 4593102 6113137 PputW619_4168 Pseudomonas putida W619 hypothetical protein YP_001751017.1 4592548 D 390235 CDS YP_001751018.1 170723330 6113138 4593263..4594942 1 NC_010501.1 PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: pfl:PFL_4236 activation/secretion protein, TPS family, putative; polypeptide-transport-associated domain-containing protein 4594942 6113138 PputW619_4169 Pseudomonas putida W619 polypeptide-transport-associated domain-containing protein YP_001751018.1 4593263 D 390235 CDS YP_001751019.1 170723331 6113139 4594970..4599496 1 NC_010501.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pap:PSPA7_4642 hemolysin; filamentous hemagglutinin outer membrane protein 4599496 6113139 PputW619_4170 Pseudomonas putida W619 filamentous hemagglutinin outer membrane protein YP_001751019.1 4594970 D 390235 CDS YP_001751020.1 170723332 6113140 complement(4599558..4600217) 1 NC_010501.1 KEGG: pen:PSEEN4272 type II secretion system protein N; type II secretion system protein N 4600217 6113140 PputW619_4171 Pseudomonas putida W619 type II secretion system protein N YP_001751020.1 4599558 R 390235 CDS YP_001751021.1 170723333 6113141 complement(4600214..4600600) 1 NC_010501.1 KEGG: pen:PSEEN4273 type II secretion system protein M; type II secretion system protein M 4600600 6113141 PputW619_4172 Pseudomonas putida W619 type II secretion system protein M YP_001751021.1 4600214 R 390235 CDS YP_001751022.1 170723334 6113142 complement(4600597..4601685) 1 NC_010501.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: pen:PSEEN4274 type II secretion pathway protein L; general secretion pathway protein L 4601685 6113142 PputW619_4173 Pseudomonas putida W619 general secretion pathway protein L YP_001751022.1 4600597 R 390235 CDS YP_001751023.1 170723335 6113143 complement(4601682..4602272) 1 NC_010501.1 KEGG: pen:PSEEN4275 type II secretion system protein J; type II secretion system protein J 4602272 6113143 PputW619_4174 Pseudomonas putida W619 type II secretion system protein J YP_001751023.1 4601682 R 390235 CDS YP_001751024.1 170723336 6113144 complement(4602269..4602637) 1 NC_010501.1 PFAM: type II secretion system protein I/J; KEGG: pen:PSEEN4276 type II secretion system protein I; type II secretion system protein I/J 4602637 6113144 PputW619_4175 Pseudomonas putida W619 type II secretion system protein I/J YP_001751024.1 4602269 R 390235 CDS YP_001751025.1 170723337 6113145 complement(4602634..4603071) 1 NC_010501.1 TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN4277 type II secretion system protein H; general secretion pathway protein H 4603071 6113145 PputW619_4176 Pseudomonas putida W619 general secretion pathway protein H YP_001751025.1 4602634 R 390235 CDS YP_001751026.1 170723338 6113146 complement(4603075..4603509) 1 NC_010501.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN4278 type II secretion system protein G; general secretion pathway protein G 4603509 6113146 PputW619_4177 Pseudomonas putida W619 general secretion pathway protein G YP_001751026.1 4603075 R 390235 CDS YP_001751027.1 170723339 6113147 complement(4603528..4604730) 1 NC_010501.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pen:PSEEN4279 type II secretion system protein F; general secretion pathway protein F 4604730 6113147 PputW619_4178 Pseudomonas putida W619 general secretion pathway protein F YP_001751027.1 4603528 R 390235 CDS YP_001751028.1 170723340 6113148 complement(4604734..4606182) 1 NC_010501.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN4280 type II secretion system protein E; type II secretion system protein E 4606182 6113148 PputW619_4179 Pseudomonas putida W619 type II secretion system protein E YP_001751028.1 4604734 R 390235 CDS YP_001751029.1 170723341 6113149 complement(4606182..4608134) 1 NC_010501.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN4281 type II secretion system protein D; general secretion pathway protein D 4608134 6113149 PputW619_4180 Pseudomonas putida W619 general secretion pathway protein D YP_001751029.1 4606182 R 390235 CDS YP_001751030.1 170723342 6113150 complement(4608138..4608563) 1 NC_010501.1 KEGG: pen:PSEEN4282 type II secretion protein C; type II secretion protein C 4608563 6113150 PputW619_4181 Pseudomonas putida W619 type II secretion protein C YP_001751030.1 4608138 R 390235 CDS YP_001751031.1 170723343 6113151 complement(4608560..4610200) 1 NC_010501.1 KEGG: pen:PSEEN4283 lipoprotein UxpA; lipoprotein UxpA 4610200 6113151 PputW619_4182 Pseudomonas putida W619 lipoprotein UxpA YP_001751031.1 4608560 R 390235 CDS YP_001751032.1 170723344 6113152 4610425..4612488 1 NC_010501.1 PFAM: protein of unknown function DUF839; KEGG: pen:PSEEN4284 hypothetical protein; hypothetical protein 4612488 6113152 PputW619_4183 Pseudomonas putida W619 hypothetical protein YP_001751032.1 4610425 D 390235 CDS YP_001751033.1 170723345 6113153 complement(4612599..4613564) 1 NC_010501.1 PFAM: General secretion pathway protein K; KEGG: pen:PSEEN4375 type II secretion system protein K (XcpX); general secretion pathway protein K 4613564 6113153 PputW619_4184 Pseudomonas putida W619 general secretion pathway protein K YP_001751033.1 4612599 R 390235 CDS YP_001751034.1 170723346 6113154 4613710..4613943 1 NC_010501.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN4376 twin-arginine translocation protein TatA; twin arginine-targeting protein translocase 4613943 6113154 PputW619_4185 Pseudomonas putida W619 twin arginine-targeting protein translocase YP_001751034.1 4613710 D 390235 CDS YP_001751035.1 170723347 6113155 4613943..4614233 1 NC_010501.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: psa:PST_0334 translocation protein TatB; twin-arginine translocation protein subunit TatB 4614233 6113155 PputW619_4186 Pseudomonas putida W619 twin-arginine translocation protein subunit TatB YP_001751035.1 4613943 D 390235 CDS YP_001751036.1 170723348 6113156 4614230..4614988 1 NC_010501.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pmy:Pmen_0516 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4614988 6113156 PputW619_4187 Pseudomonas putida W619 Sec-independent protein translocase subunit TatC YP_001751036.1 4614230 D 390235 CDS YP_001751037.1 170723349 6113157 complement(4615032..4615343) 1 NC_010501.1 KEGG: pen:PSEEN4385 hypothetical protein; hypothetical protein 4615343 6113157 PputW619_4188 Pseudomonas putida W619 hypothetical protein YP_001751037.1 4615032 R 390235 CDS YP_001751038.1 170723350 6113158 complement(4615347..4619246) 1 NC_010501.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 4619246 6113158 PputW619_4189 Pseudomonas putida W619 phosphoribosylformylglycinamidine synthase YP_001751038.1 4615347 R 390235 CDS YP_001751039.1 170723351 6113159 4619470..4620927 1 NC_010501.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 4620927 6113159 PputW619_4190 Pseudomonas putida W619 putative transglycosylase YP_001751039.1 4619470 D 390235 CDS YP_001751040.1 170723352 6113160 complement(4621032..4621511) 1 NC_010501.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pen:PSEEN4389 cytidine/deoxycytidylate deaminase; CMP/dCMP deaminase 4621511 6113160 PputW619_4191 Pseudomonas putida W619 CMP/dCMP deaminase YP_001751040.1 4621032 R 390235 CDS YP_001751041.1 170723353 6113161 complement(4621511..4622896) 1 NC_010501.1 PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN4390 Mn2+ multicopper oxidase CumA; multicopper oxidase type 3 4622896 6113161 PputW619_4192 Pseudomonas putida W619 multicopper oxidase type 3 YP_001751041.1 4621511 R 390235 CDS YP_001751042.1 170723354 6113162 complement(4623066..4624643) 1 NC_010501.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 4624643 guaA 6113162 guaA Pseudomonas putida W619 GMP synthase YP_001751042.1 4623066 R 390235 CDS YP_001751043.1 170723355 6113163 complement(4624770..4626239) 1 NC_010501.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 4626239 6113163 PputW619_4194 Pseudomonas putida W619 inosine 5'-monophosphate dehydrogenase YP_001751043.1 4624770 R 390235 CDS YP_001751044.1 170723356 6113164 complement(4626326..4626883) 1 NC_010501.1 KEGG: pen:PSEEN4394 hypothetical protein; hypothetical protein 4626883 6113164 PputW619_4195 Pseudomonas putida W619 hypothetical protein YP_001751044.1 4626326 R 390235 CDS YP_001751045.1 170723357 6113165 complement(4626930..4627685) 1 NC_010501.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN4395 hypothetical protein; hypothetical protein 4627685 6113165 PputW619_4196 Pseudomonas putida W619 hypothetical protein YP_001751045.1 4626930 R 390235 CDS YP_001751046.1 170723358 6113166 4627790..4629181 1 NC_010501.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 4629181 xseA 6113166 xseA Pseudomonas putida W619 exodeoxyribonuclease VII large subunit YP_001751046.1 4627790 D 390235 CDS YP_001751047.1 170723359 6113167 4629185..4630012 1 NC_010501.1 PFAM: peptidase M23B; KEGG: pen:PSEEN4398 peptidase, M23/M37 family; peptidase M23B 4630012 6113167 PputW619_4198 Pseudomonas putida W619 peptidase M23B YP_001751047.1 4629185 D 390235 CDS YP_001751048.1 170723360 6113168 4630414..4632087 1 NC_010501.1 KEGG: pen:PSEEN4399 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 4632087 6113168 PputW619_4199 Pseudomonas putida W619 2-isopropylmalate synthase YP_001751048.1 4630414 D 390235 CDS YP_001751049.1 170723361 6113169 complement(4632315..4632989) 1 NC_010501.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 4632989 6113169 PputW619_4200 Pseudomonas putida W619 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001751049.1 4632315 R 390235 CDS YP_001751050.1 170723362 6113170 complement(4633007..4633720) 1 NC_010501.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pen:PSEEN4404 6-phosphogluconolactonase; 6-phosphogluconolactonase 4633720 6113170 PputW619_4201 Pseudomonas putida W619 6-phosphogluconolactonase YP_001751050.1 4633007 R 390235 CDS YP_001751051.1 170723363 6113171 complement(4633707..4635176) 1 NC_010501.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4635176 6113171 PputW619_4202 Pseudomonas putida W619 glucose-6-phosphate 1-dehydrogenase YP_001751051.1 4633707 R 390235 CDS YP_001751052.1 170723364 6113172 4635379..4636251 1 NC_010501.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 4636251 6113172 PputW619_4203 Pseudomonas putida W619 DNA-binding transcriptional regulator HexR YP_001751052.1 4635379 D 390235 CDS YP_001751053.1 170723365 6113173 complement(4636244..4637098) 1 NC_010501.1 PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN4407 hypothetical protein; aldose 1-epimerase 4637098 6113173 PputW619_4204 Pseudomonas putida W619 aldose 1-epimerase YP_001751053.1 4636244 R 390235 CDS YP_001751054.1 170723366 6113174 complement(4637216..4638559) 1 NC_010501.1 PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN4408 glucose-selective porin OprB; carbohydrate-selective porin OprB 4638559 6113174 PputW619_4205 Pseudomonas putida W619 carbohydrate-selective porin OprB YP_001751054.1 4637216 R 390235 CDS YP_001751055.1 170723367 6113175 complement(4638600..4639754) 1 NC_010501.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN4409 glucose ABC transporter, ATP-binding subunit; ABC transporter-like protein 4639754 6113175 PputW619_4206 Pseudomonas putida W619 ABC transporter-like protein YP_001751055.1 4638600 R 390235 CDS YP_001751056.1 170723368 6113176 complement(4639758..4640603) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_4368 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4640603 6113176 PputW619_4207 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751056.1 4639758 R 390235 CDS YP_001751057.1 170723369 6113177 complement(4640596..4641504) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4411 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4641504 6113177 PputW619_4208 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751057.1 4640596 R 390235 CDS YP_001751058.1 170723370 6113178 complement(4641698..4642984) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4412 glucose ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein 4642984 6113178 PputW619_4209 Pseudomonas putida W619 extracellular solute-binding protein YP_001751058.1 4641698 R 390235 CDS YP_001751059.1 170723371 6113179 complement(4643089..4644315) 1 NC_010501.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4413 N-acyl-D-glucosamine 2-epimerase; N-acylglucosamine 2-epimerase 4644315 6113179 PputW619_4210 Pseudomonas putida W619 N-acylglucosamine 2-epimerase YP_001751059.1 4643089 R 390235 CDS YP_001751060.1 170723372 6113180 complement(4644418..4645872) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4414 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4645872 6113180 PputW619_4211 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001751060.1 4644418 R 390235 CDS YP_001751061.1 170723373 6113181 complement(4645853..4646578) 1 NC_010501.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4415 two-component response regulator GltR; two component transcriptional regulator 4646578 6113181 PputW619_4212 Pseudomonas putida W619 two component transcriptional regulator YP_001751061.1 4645853 R 390235 CDS YP_001751062.1 170723374 6113182 complement(4646644..4647603) 1 NC_010501.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 4647603 glk 6113182 glk Pseudomonas putida W619 glucokinase YP_001751062.1 4646644 R 390235 CDS YP_001751063.1 170723375 6113183 complement(4647600..4649426) 1 NC_010501.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 4649426 6113183 PputW619_4214 Pseudomonas putida W619 phosphogluconate dehydratase YP_001751063.1 4647600 R 390235 CDS YP_001751064.1 170723376 6113184 4649692..4650693 1 NC_010501.1 KEGG: pen:PSEEN4418 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; type I glyceraldehyde-3-phosphate dehydrogenase 4650693 6113184 PputW619_4215 Pseudomonas putida W619 type I glyceraldehyde-3-phosphate dehydrogenase YP_001751064.1 4649692 D 390235 CDS YP_001751065.1 170723377 6113185 4650914..4651426 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4420 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4651426 6113185 PputW619_4216 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001751065.1 4650914 D 390235 CDS YP_001751066.1 170723378 6113186 4651517..4652479 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN4421 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4652479 6113186 PputW619_4217 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001751066.1 4651517 D 390235 CDS YP_001751067.1 170723379 6113187 4652606..4655194 1 NC_010501.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4422 TonB-dependent outer membrane heme receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 4655194 6113187 PputW619_4218 Pseudomonas putida W619 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_001751067.1 4652606 D 390235 CDS YP_001751068.1 170723380 6113188 4655336..4655929 1 NC_010501.1 PFAM: Haem oxygenase; KEGG: pen:PSEEN4423 heme oxygenase; heme oxygenase 4655929 6113188 PputW619_4219 Pseudomonas putida W619 heme oxygenase YP_001751068.1 4655336 D 390235 CDS YP_001751069.1 170723381 6113189 4655984..4656391 1 NC_010501.1 PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN4424 hypothetical protein; hypothetical protein 4656391 6113189 PputW619_4220 Pseudomonas putida W619 hypothetical protein YP_001751069.1 4655984 D 390235 CDS YP_001751070.1 170723382 6113190 complement(4656377..4657804) 1 NC_010501.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4426 arginine/ornithine antiporter; arginine/ornithine antiporter 4657804 6113190 PputW619_4221 Pseudomonas putida W619 arginine/ornithine antiporter YP_001751070.1 4656377 R 390235 CDS YP_001751071.1 170723383 6113191 4658242..4659669 1 NC_010501.1 TIGRFAM: arginine/ornithine antiporter; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN4427 arginine/ornithine antiporter; arginine/ornithine antiporter 4659669 6113191 PputW619_4222 Pseudomonas putida W619 arginine/ornithine antiporter YP_001751071.1 4658242 D 390235 CDS YP_001751072.1 170723384 6113192 4659702..4660955 1 NC_010501.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4660955 6113192 PputW619_4223 Pseudomonas putida W619 arginine deiminase YP_001751072.1 4659702 D 390235 CDS YP_001751073.1 170723385 6113193 4661024..4662034 1 NC_010501.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4662034 6113193 PputW619_4224 Pseudomonas putida W619 ornithine carbamoyltransferase YP_001751073.1 4661024 D 390235 CDS YP_001751074.1 170723386 6113194 4662177..4663106 1 NC_010501.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4663106 6113194 PputW619_4225 Pseudomonas putida W619 carbamate kinase YP_001751074.1 4662177 D 390235 CDS YP_001751075.1 170723387 6113195 4663163..4663531 1 NC_010501.1 KEGG: pen:PSEEN4431 hypothetical protein; hypothetical protein 4663531 6113195 PputW619_4226 Pseudomonas putida W619 hypothetical protein YP_001751075.1 4663163 D 390235 CDS YP_001751076.1 170723388 6113196 4663595..4665190 1 NC_010501.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN4432 sigma-54 dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein 4665190 6113196 PputW619_4227 Pseudomonas putida W619 sigma-54 factor interaction domain-containing protein YP_001751076.1 4663595 D 390235 CDS YP_001751077.1 170723389 6113197 4665410..4666615 1 NC_010501.1 PFAM: sodium/glutamate symporter; KEGG: cvi:CV_1105 sodium/glutamate symport carrier protein; sodium/glutamate symporter 4666615 6113197 PputW619_4228 Pseudomonas putida W619 sodium/glutamate symporter YP_001751077.1 4665410 D 390235 CDS YP_001751078.1 170723390 6113198 4666893..4667276 1 NC_010501.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4667276 6113198 PputW619_4229 Pseudomonas putida W619 glycine cleavage system protein H YP_001751078.1 4666893 D 390235 CDS YP_001751079.1 170723391 6113199 4667288..4670143 1 NC_010501.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4670143 6113199 PputW619_4230 Pseudomonas putida W619 glycine dehydrogenase YP_001751079.1 4667288 D 390235 CDS YP_001751080.1 170723392 6113200 4670303..4671679 1 NC_010501.1 KEGG: pen:PSEEN4437 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 4671679 6113200 PputW619_4231 Pseudomonas putida W619 L-serine dehydratase 1 YP_001751080.1 4670303 D 390235 CDS YP_001751081.1 170723393 6113201 4671707..4672828 1 NC_010501.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pen:PSEEN4438 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent; glycine cleavage system T protein 4672828 6113201 PputW619_4232 Pseudomonas putida W619 glycine cleavage system T protein YP_001751081.1 4671707 D 390235 CDS YP_001751082.1 170723394 6113202 4673184..4673396 1 NC_010501.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: psa:PST_3054 cold acclimation protein B; cold-shock DNA-binding domain-containing protein 4673396 6113202 PputW619_4233 Pseudomonas putida W619 cold-shock DNA-binding domain-containing protein YP_001751082.1 4673184 D 390235 CDS YP_001751083.1 170723395 6113203 4673488..4673976 1 NC_010501.1 PFAM: RDD domain containing protein; KEGG: pen:PSEEN4440 hypothetical protein; RDD domain-containing protein 4673976 6113203 PputW619_4234 Pseudomonas putida W619 RDD domain-containing protein YP_001751083.1 4673488 D 390235 CDS YP_001751084.1 170723396 6113204 complement(4674074..4675135) 1 NC_010501.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4441 hypothetical protein; YjgP/YjgQ family permease 4675135 6113204 PputW619_4235 Pseudomonas putida W619 YjgP/YjgQ family permease YP_001751084.1 4674074 R 390235 CDS YP_001751085.1 170723397 6113205 complement(4675128..4676243) 1 NC_010501.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4442 hypothetical protein; YjgP/YjgQ family permease 4676243 6113205 PputW619_4236 Pseudomonas putida W619 YjgP/YjgQ family permease YP_001751085.1 4675128 R 390235 CDS YP_001751086.1 170723398 6113206 4676533..4678026 1 NC_010501.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4678026 6113206 PputW619_4237 Pseudomonas putida W619 leucyl aminopeptidase YP_001751086.1 4676533 D 390235 CDS YP_001751087.1 170723399 6113207 4678078..4678506 1 NC_010501.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4678506 6113207 PputW619_4238 Pseudomonas putida W619 DNA polymerase III subunit chi YP_001751087.1 4678078 D 390235 CDS YP_001751088.1 170723400 6113208 4678512..4678889 1 NC_010501.1 KEGG: pen:PSEEN4445 hypothetical protein; hypothetical protein 4678889 6113208 PputW619_4239 Pseudomonas putida W619 hypothetical protein YP_001751088.1 4678512 D 390235 CDS YP_001751089.1 170723401 6113209 4679028..4681874 1 NC_010501.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4681874 valS 6113209 valS Pseudomonas putida W619 valyl-tRNA synthetase YP_001751089.1 4679028 D 390235 CDS YP_001751090.1 170723402 6113210 4682046..4682996 1 NC_010501.1 PFAM: protein of unknown function DUF890; KEGG: pen:PSEEN4447 hypothetical protein; putative SAM-dependent methyltransferase 4682996 6113210 PputW619_4241 Pseudomonas putida W619 putative SAM-dependent methyltransferase YP_001751090.1 4682046 D 390235 CDS YP_001751091.1 170723403 6113211 complement(4683048..4683329) 1 NC_010501.1 PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN4448 DNA-binding protein HU form N; histone family protein DNA-binding protein 4683329 6113211 PputW619_4242 Pseudomonas putida W619 histone family protein DNA-binding protein YP_001751091.1 4683048 R 390235 CDS YP_001751092.1 170723404 6113212 4683723..4684730 1 NC_010501.1 PFAM: 37kDa nucleoid-associated protein; KEGG: pen:PSEEN4449 nucleoid-associated protein; nucleoid-associated protein NdpA 4684730 6113212 PputW619_4243 Pseudomonas putida W619 nucleoid-associated protein NdpA YP_001751092.1 4683723 D 390235 CDS YP_001751093.1 170723405 6113213 complement(4684731..4685015) 1 NC_010501.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: pen:PSEEN4450 endonuclease; GIY-YIG nuclease superfamily protein 4685015 6113213 PputW619_4244 Pseudomonas putida W619 GIY-YIG nuclease superfamily protein YP_001751093.1 4684731 R 390235 CDS YP_001751094.1 170723406 6113214 complement(4685055..4685525) 1 NC_010501.1 KEGG: pen:PSEEN4451 hypothetical protein; hypothetical protein 4685525 6113214 PputW619_4245 Pseudomonas putida W619 hypothetical protein YP_001751094.1 4685055 R 390235 CDS YP_001751095.1 170723407 6113215 complement(4685628..4686908) 1 NC_010501.1 TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4452 cyanate MFS transporter; cyanate transporter 4686908 6113215 PputW619_4246 Pseudomonas putida W619 cyanate transporter YP_001751095.1 4685628 R 390235 CDS YP_001751096.1 170723408 6113216 complement(4686922..4687572) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN4453 transcriptional regulator, GntR family; GntR family transcriptional regulator 4687572 6113216 PputW619_4247 Pseudomonas putida W619 GntR family transcriptional regulator YP_001751096.1 4686922 R 390235 CDS YP_001751097.1 170723409 6113217 complement(4687685..4688731) 1 NC_010501.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 4688731 6113217 PputW619_4248 Pseudomonas putida W619 histidinol-phosphate aminotransferase YP_001751097.1 4687685 R 390235 CDS YP_001751098.1 170723410 6113218 complement(4688734..4690059) 1 NC_010501.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 4690059 hisD 6113218 hisD Pseudomonas putida W619 histidinol dehydrogenase YP_001751098.1 4688734 R 390235 CDS YP_001751099.1 170723411 6113219 complement(4690186..4690821) 1 NC_010501.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 4690821 hisG 6113219 hisG Pseudomonas putida W619 ATP phosphoribosyltransferase catalytic subunit YP_001751099.1 4690186 R 390235 CDS YP_001751100.1 170723412 6113220 complement(4690912..4692177) 1 NC_010501.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4692177 6113220 PputW619_4251 Pseudomonas putida W619 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001751100.1 4690912 R 390235 CDS YP_001751101.1 170723413 6113221 complement(4692201..4692440) 1 NC_010501.1 PFAM: BolA family protein; KEGG: pen:PSEEN1104 toluene-tolerance protein Ttg2F; BolA family protein 4692440 6113221 PputW619_4252 Pseudomonas putida W619 BolA family protein YP_001751101.1 4692201 R 390235 CDS YP_001751102.1 170723414 6113222 complement(4692559..4692861) 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN1103 toluene-tolerance protein TtgE; anti-sigma-factor antagonist 4692861 6113222 PputW619_4253 Pseudomonas putida W619 anti-sigma-factor antagonist YP_001751102.1 4692559 R 390235 CDS YP_001751103.1 170723415 6113223 complement(4692858..4693511) 1 NC_010501.1 PFAM: toluene tolerance family protein; KEGG: pen:PSEEN1102 toluene tolerance protein Ttg2D; toluene tolerance family protein 4693511 6113223 PputW619_4254 Pseudomonas putida W619 toluene tolerance family protein YP_001751103.1 4692858 R 390235 CDS YP_001751104.1 170723416 6113224 complement(4693521..4694006) 1 NC_010501.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN1101 toluene tolerance ABC transporter, periplasmic substrate-binding protein; hypothetical protein 4694006 6113224 PputW619_4255 Pseudomonas putida W619 hypothetical protein YP_001751104.1 4693521 R 390235 CDS YP_001751105.1 170723417 6113225 complement(4694006..4694803) 1 NC_010501.1 PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN1100 toluene tolerance ABC efflux transporter, permease; hypothetical protein 4694803 6113225 PputW619_4256 Pseudomonas putida W619 hypothetical protein YP_001751105.1 4694006 R 390235 CDS YP_001751106.1 170723418 6113226 complement(4694803..4695612) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1099 toluene tolerance ABC efflux transporter, ATP-binding protein; ABC transporter-like protein 4695612 6113226 PputW619_4257 Pseudomonas putida W619 ABC transporter-like protein YP_001751106.1 4694803 R 390235 CDS YP_001751107.1 170723419 6113227 4695860..4696834 1 NC_010501.1 KEGG: pen:PSEEN1098 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4696834 6113227 PputW619_4258 Pseudomonas putida W619 KpsF/GutQ family protein YP_001751107.1 4695860 D 390235 CDS YP_001751108.1 170723420 6113228 4696835..4697374 1 NC_010501.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pen:PSEEN1097 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4697374 6113228 PputW619_4259 Pseudomonas putida W619 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001751108.1 4696835 D 390235 CDS YP_001751109.1 170723421 6113229 4697382..4697954 1 NC_010501.1 PFAM: protein of unknown function DUF1239; KEGG: pen:PSEEN1096 hypothetical protein; hypothetical protein 4697954 6113229 PputW619_4260 Pseudomonas putida W619 hypothetical protein YP_001751109.1 4697382 D 390235 CDS YP_001751110.1 170723422 6113230 4697941..4698465 1 NC_010501.1 TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: pen:PSEEN1095 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA 4698465 6113230 PputW619_4261 Pseudomonas putida W619 lipopolysaccharide transport periplasmic protein LptA YP_001751110.1 4697941 D 390235 CDS YP_001751111.1 170723423 6113231 4698466..4699191 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1094 ABC transporter, ATP-binding protein; ABC transporter-like protein 4699191 6113231 PputW619_4262 Pseudomonas putida W619 ABC transporter-like protein YP_001751111.1 4698466 D 390235 CDS YP_001751112.1 170723424 6113232 4699366..4700859 1 NC_010501.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4700859 6113232 PputW619_4263 Pseudomonas putida W619 RNA polymerase factor sigma-54 YP_001751112.1 4699366 D 390235 CDS YP_001751113.1 170723425 6113233 4700939..4701247 1 NC_010501.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pen:PSEEN1092 sigma N (sigma 54) modulator RpoX; sigma 54 modulation protein/30S ribosomal protein S30EA 4701247 6113233 PputW619_4264 Pseudomonas putida W619 sigma 54 modulation protein/30S ribosomal protein S30EA YP_001751113.1 4700939 D 390235 CDS YP_001751114.1 170723426 6113234 4701259..4701723 1 NC_010501.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pen:PSEEN1091 phosphotransferase system, nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4701723 6113234 PputW619_4265 Pseudomonas putida W619 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001751114.1 4701259 D 390235 CDS YP_001751115.1 170723427 6113235 4701726..4702580 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1090 uncharacterized ATPase; hypothetical protein 4702580 6113235 PputW619_4266 Pseudomonas putida W619 hypothetical protein YP_001751115.1 4701726 D 390235 CDS YP_001751116.1 170723428 6113236 4702601..4702873 1 NC_010501.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pen:PSEEN1089 phosphocarrier protein (HPr-like) NPr; phosphotransferase system, phosphocarrier protein HPr 4702873 6113236 PputW619_4267 Pseudomonas putida W619 phosphotransferase system, phosphocarrier protein HPr YP_001751116.1 4702601 D 390235 CDS YP_001751117.1 170723429 6113237 complement(4702937..4703830) 1 NC_010501.1 PFAM: zinc/iron permease; KEGG: pen:PSEEN1088 hypothetical protein; zinc/iron permease 4703830 6113237 PputW619_4268 Pseudomonas putida W619 zinc/iron permease YP_001751117.1 4702937 R 390235 CDS YP_001751118.1 170723430 6113238 complement(4703842..4704453) 1 NC_010501.1 PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1087 superoxide dismutase; superoxide dismutase 4704453 6113238 PputW619_4269 Pseudomonas putida W619 superoxide dismutase YP_001751118.1 4703842 R 390235 CDS YP_001751119.1 170723431 6113239 complement(4704455..4704916) 1 NC_010501.1 KEGG: pen:PSEEN1086 hypothetical protein; hypothetical protein 4704916 6113239 PputW619_4270 Pseudomonas putida W619 hypothetical protein YP_001751119.1 4704455 R 390235 CDS YP_001751120.1 170723432 6113240 complement(4704944..4706320) 1 NC_010501.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 4706320 fumC 6113240 fumC Pseudomonas putida W619 fumarate hydratase YP_001751120.1 4704944 R 390235 CDS YP_001751121.1 170723433 6113241 complement(4706313..4706705) 1 NC_010501.1 KEGG: pen:PSEEN1084 hypothetical protein; hypothetical protein 4706705 6113241 PputW619_4272 Pseudomonas putida W619 hypothetical protein YP_001751121.1 4706313 R 390235 CDS YP_001751122.1 170723434 6113242 complement(4706842..4708188) 1 NC_010501.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1083 peptidase U62 TldE; peptidase U62 modulator of DNA gyrase 4708188 6113242 PputW619_4273 Pseudomonas putida W619 peptidase U62 modulator of DNA gyrase YP_001751122.1 4706842 R 390235 CDS YP_001751123.1 170723435 6113243 4708344..4708865 1 NC_010501.1 PFAM: protein of unknown function DUF615; KEGG: pen:PSEEN1082 hypothetical protein; hypothetical protein 4708865 6113243 PputW619_4274 Pseudomonas putida W619 hypothetical protein YP_001751123.1 4708344 D 390235 CDS YP_001751124.1 170723436 6113244 complement(4708907..4710346) 1 NC_010501.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1081 peptidase U62 TldD; peptidase U62 modulator of DNA gyrase 4710346 6113244 PputW619_4275 Pseudomonas putida W619 peptidase U62 modulator of DNA gyrase YP_001751124.1 4708907 R 390235 CDS YP_001751125.1 170723437 6113245 complement(4710349..4711200) 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1080 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4711200 6113245 PputW619_4276 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001751125.1 4710349 R 390235 CDS YP_001751126.1 170723438 6113246 complement(4711215..4715024) 1 NC_010501.1 KEGG: pen:PSEEN1079 hypothetical protein; hypothetical protein 4715024 6113246 PputW619_4277 Pseudomonas putida W619 hypothetical protein YP_001751126.1 4711215 R 390235 CDS YP_001751127.1 170723439 6113247 complement(4715113..4716570) 1 NC_010501.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1078 ibonuclease G; ribonuclease 4716570 6113247 PputW619_4278 Pseudomonas putida W619 ribonuclease YP_001751127.1 4715113 R 390235 CDS YP_001751128.1 170723440 6113248 complement(4716625..4717236) 1 NC_010501.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 4717236 6113248 PputW619_4279 Pseudomonas putida W619 Maf-like protein YP_001751128.1 4716625 R 390235 CDS YP_001751129.1 170723441 6113249 complement(4717270..4717758) 1 NC_010501.1 TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: pen:PSEEN1076 rod shape-determining protein MreD; rod shape-determining protein MreD 4717758 6113249 PputW619_4280 Pseudomonas putida W619 rod shape-determining protein MreD YP_001751129.1 4717270 R 390235 CDS YP_001751130.1 170723442 6113250 complement(4717758..4718759) 1 NC_010501.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 4718759 6113250 PputW619_4281 Pseudomonas putida W619 rod shape-determining protein MreC YP_001751130.1 4717758 R 390235 CDS YP_001751131.1 170723443 6113251 complement(4718985..4720022) 1 NC_010501.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 4720022 6113251 PputW619_4282 Pseudomonas putida W619 rod shape-determining protein MreB YP_001751131.1 4718985 R 390235 CDS YP_001751132.1 170723444 6113252 4720227..4720514 1 NC_010501.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 4720514 gatC 6113252 gatC Pseudomonas putida W619 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001751132.1 4720227 D 390235 CDS YP_001751133.1 170723445 6113253 4720530..4721981 1 NC_010501.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 4721981 gatA 6113253 gatA Pseudomonas putida W619 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001751133.1 4720530 D 390235 CDS YP_001751134.1 170723446 6113254 4721993..4723438 1 NC_010501.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 4723438 gatB 6113254 gatB Pseudomonas putida W619 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001751134.1 4721993 D 390235 CDS YP_001751135.1 170723447 6113255 4723511..4723978 1 NC_010501.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pen:PSEEN1070 lipoprotein, RplA family; rare lipoprotein A 4723978 6113255 PputW619_4286 Pseudomonas putida W619 rare lipoprotein A YP_001751135.1 4723511 D 390235 CDS YP_001751136.1 170723448 6113256 4724051..4725082 1 NC_010501.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pen:PSEEN1069 K+-dependent Na+/Ca+ antiporter; CaCA family Na(+)/Ca(+) antiporter 4725082 6113256 PputW619_4287 Pseudomonas putida W619 CaCA family Na(+)/Ca(+) antiporter YP_001751136.1 4724051 D 390235 CDS YP_001751137.1 170723449 6113257 complement(4725159..4726514) 1 NC_010501.1 PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1067 aromatic amino acid transporter, APC family; amino acid permease-associated protein 4726514 6113257 PputW619_4288 Pseudomonas putida W619 amino acid permease-associated protein YP_001751137.1 4725159 R 390235 CDS YP_001751138.1 170723450 6113258 complement(4726570..4727511) 1 NC_010501.1 PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN1066 hypothetical protein; auxin efflux carrier 4727511 6113258 PputW619_4289 Pseudomonas putida W619 auxin efflux carrier YP_001751138.1 4726570 R 390235 CDS YP_001751139.1 170723451 6113259 complement(4727722..4728285) 1 NC_010501.1 PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: pen:PSEEN1063 response regulator, RegA/PrrA/ActR type; two component Fis family transcriptional regulator 4728285 6113259 PputW619_4290 Pseudomonas putida W619 two component Fis family transcriptional regulator YP_001751139.1 4727722 R 390235 CDS YP_001751140.1 170723452 6113260 complement(4728282..4729538) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1062 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4729538 6113260 PputW619_4291 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001751140.1 4728282 R 390235 CDS YP_001751141.1 170723453 6113261 4729741..4730457 1 NC_010501.1 PFAM: protein of unknown function DUF541; KEGG: pen:PSEEN1061 hypothetical protein; hypothetical protein 4730457 6113261 PputW619_4292 Pseudomonas putida W619 hypothetical protein YP_001751141.1 4729741 D 390235 CDS YP_001751142.1 170723454 6113262 4730767..4732392 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1060 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 4732392 6113262 PputW619_4293 Pseudomonas putida W619 extracellular solute-binding protein YP_001751142.1 4730767 D 390235 CDS YP_001751143.1 170723455 6113263 4732528..4734120 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1059 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 4734120 6113263 PputW619_4294 Pseudomonas putida W619 extracellular solute-binding protein YP_001751143.1 4732528 D 390235 CDS YP_001751144.1 170723456 6113264 4734342..4735721 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN1058 porin, OprD family; outer membrane porin 4735721 6113264 PputW619_4295 Pseudomonas putida W619 outer membrane porin YP_001751144.1 4734342 D 390235 CDS YP_001751145.1 170723457 6113265 4735795..4737390 1 NC_010501.1 PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1057 dipeptide ABC transporter, periplasmic dipeptide-binding protein; extracellular solute-binding protein 4737390 6113265 PputW619_4296 Pseudomonas putida W619 extracellular solute-binding protein YP_001751145.1 4735795 D 390235 CDS YP_001751146.1 170723458 6113266 4737467..4738477 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1056 dipeptide ABC transporter, permease protein; alkaline phosphatase 4738477 6113266 PputW619_4297 Pseudomonas putida W619 alkaline phosphatase YP_001751146.1 4737467 D 390235 CDS YP_001751147.1 170723459 6113267 4738488..4739414 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1055 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4739414 6113267 PputW619_4298 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751147.1 4738488 D 390235 CDS YP_001751148.1 170723460 6113268 4739425..4740393 1 NC_010501.1 KEGG: pen:PSEEN1054 dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 4740393 6113268 PputW619_4299 Pseudomonas putida W619 oligopeptide/dipeptide ABC transporter ATPase YP_001751148.1 4739425 D 390235 CDS YP_001751149.1 170723461 6113269 4740393..4741361 1 NC_010501.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 4741361 dppF 6113269 dppF Pseudomonas putida W619 dipeptide transporter ATP-binding subunit YP_001751149.1 4740393 D 390235 CDS YP_001751150.1 170723462 6113270 complement(4741573..4742460) 1 NC_010501.1 KEGG: pfl:PFL_2576 hypothetical protein; hypothetical protein 4742460 6113270 PputW619_4301 Pseudomonas putida W619 hypothetical protein YP_001751150.1 4741573 R 390235 CDS YP_001751151.1 170723463 6113271 4742711..4743520 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1051 transcriptional regulator, AraC family; AraC family transcriptional regulator 4743520 6113271 PputW619_4302 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751151.1 4742711 D 390235 CDS YP_001751152.1 170723464 6113272 4743585..4744991 1 NC_010501.1 PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1050 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4744991 6113272 PputW619_4303 Pseudomonas putida W619 FAD dependent oxidoreductase YP_001751152.1 4743585 D 390235 CDS YP_001751153.1 170723465 6113273 4745024..4745365 1 NC_010501.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN1049 hypothetical protein; hypothetical protein 4745365 6113273 PputW619_4304 Pseudomonas putida W619 hypothetical protein YP_001751153.1 4745024 D 390235 CDS YP_001751154.1 170723466 6113274 4745418..4746497 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1048 periplasmic polyamine-binding protein; extracellular solute-binding protein 4746497 6113274 PputW619_4305 Pseudomonas putida W619 extracellular solute-binding protein YP_001751154.1 4745418 D 390235 CDS YP_001751155.1 170723467 6113275 complement(4746609..4748192) 1 NC_010501.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4748192 prfC 6113275 prfC Pseudomonas putida W619 peptide chain release factor 3 YP_001751155.1 4746609 R 390235 CDS YP_001751156.1 170723468 6113276 4748640..4749353 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1043 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4749353 6113276 PputW619_4307 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751156.1 4748640 D 390235 CDS YP_001751157.1 170723469 6113277 4749367..4750278 1 NC_010501.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1042 glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; glycine betaine ABC transporter substrate-binding protein 4750278 6113277 PputW619_4308 Pseudomonas putida W619 glycine betaine ABC transporter substrate-binding protein YP_001751157.1 4749367 D 390235 CDS YP_001751158.1 170723470 6113278 4750275..4750928 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1041 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4750928 6113278 PputW619_4309 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751158.1 4750275 D 390235 CDS YP_001751159.1 170723471 6113279 4750925..4752082 1 NC_010501.1 KEGG: pen:PSEEN1040 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 4752082 6113279 PputW619_4310 Pseudomonas putida W619 glycine betaine/L-proline ABC transporter ATPase YP_001751159.1 4750925 D 390235 CDS YP_001751160.1 170723472 6113280 complement(4752194..4754623) 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN1039 FecA-like outer membrane receptor; TonB-dependent siderophore receptor 4754623 6113280 PputW619_4311 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001751160.1 4752194 R 390235 CDS YP_001751161.1 170723473 6113281 complement(4754732..4755694) 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4755694 6113281 PputW619_4312 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001751161.1 4754732 R 390235 CDS YP_001751162.1 170723474 6113282 complement(4755712..4756200) 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1037 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 4756200 6113282 PputW619_4313 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001751162.1 4755712 R 390235 CDS YP_001751163.1 170723475 6113283 4756709..4757872 1 NC_010501.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN1035 ornithine decarboxylase; ornithine decarboxylase 4757872 6113283 PputW619_4314 Pseudomonas putida W619 ornithine decarboxylase YP_001751163.1 4756709 D 390235 CDS YP_001751164.1 170723476 6113284 complement(4758024..4758773) 1 NC_010501.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1032 hypothetical protein; Sel1 domain-containing protein 4758773 6113284 PputW619_4315 Pseudomonas putida W619 Sel1 domain-containing protein YP_001751164.1 4758024 R 390235 CDS YP_001751165.1 170723477 6113285 complement(4758777..4759457) 1 NC_010501.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN1031 PKHD-type hydroxylase; iron-uptake factor; putative hydroxylase 4759457 6113285 PputW619_4316 Pseudomonas putida W619 putative hydroxylase YP_001751165.1 4758777 R 390235 CDS YP_001751166.1 170723478 6113286 4759678..4761960 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1029 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4761960 6113286 PputW619_4317 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001751166.1 4759678 D 390235 CDS YP_001751167.1 170723479 6113287 4762063..4764618 1 NC_010501.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein; flavodoxin/nitric oxide synthase 4764618 6113287 PputW619_4318 Pseudomonas putida W619 flavodoxin/nitric oxide synthase YP_001751167.1 4762063 D 390235 CDS YP_001751168.1 170723480 6113288 complement(4764782..4765573) 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1027 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4765573 6113288 PputW619_4319 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001751168.1 4764782 R 390235 CDS YP_001751169.1 170723481 6113289 complement(4765561..4766709) 1 NC_010501.1 catalyzes the transfer of an amino moiety; putative aminotransferase 4766709 6113289 PputW619_4320 Pseudomonas putida W619 putative aminotransferase YP_001751169.1 4765561 R 390235 CDS YP_001751170.1 170723482 6113290 complement(4766829..4768292) 1 NC_010501.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 4768292 engA 6113290 engA Pseudomonas putida W619 GTP-binding protein EngA YP_001751170.1 4766829 R 390235 CDS YP_001751171.1 170723483 6113291 complement(4768410..4769579) 1 NC_010501.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1024 hypothetical protein; outer membrane assembly lipoprotein YfgL 4769579 6113291 PputW619_4322 Pseudomonas putida W619 outer membrane assembly lipoprotein YfgL YP_001751171.1 4768410 R 390235 CDS YP_001751172.1 170723484 6113292 complement(4769554..4770195) 1 NC_010501.1 KEGG: pen:PSEEN1023 hypothetical protein; hypothetical protein 4770195 6113292 PputW619_4323 Pseudomonas putida W619 hypothetical protein YP_001751172.1 4769554 R 390235 CDS YP_001751173.1 170723485 6113293 complement(4770235..4771524) 1 NC_010501.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 4771524 hisS 6113293 hisS Pseudomonas putida W619 histidyl-tRNA synthetase YP_001751173.1 4770235 R 390235 CDS YP_001751174.1 170723486 6113294 complement(4771549..4772658) 1 NC_010501.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4772658 ispG 6113294 ispG Pseudomonas putida W619 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001751174.1 4771549 R 390235 CDS YP_001751175.1 170723487 6113295 complement(4772662..4773693) 1 NC_010501.1 SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN1020 transcriptional regulator; XRE family transcriptional regulator 4773693 6113295 PputW619_4326 Pseudomonas putida W619 XRE family transcriptional regulator YP_001751175.1 4772662 R 390235 CDS YP_001751176.1 170723488 6113296 complement(4773690..4774451) 1 NC_010501.1 KEGG: pen:PSEEN1019 type IV pili biogenesis protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 4774451 6113296 PputW619_4327 Pseudomonas putida W619 type IV pilus biogenesis/stability protein PilW YP_001751176.1 4773690 R 390235 CDS YP_001751177.1 170723489 6113297 complement(4774465..4775610) 1 NC_010501.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pen:PSEEN1018 radical SAM enzyme, Cfr family; radical SAM protein 4775610 6113297 PputW619_4328 Pseudomonas putida W619 radical SAM protein YP_001751177.1 4774465 R 390235 CDS YP_001751178.1 170723490 6113298 complement(4775639..4776064) 1 NC_010501.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 4776064 ndk 6113298 ndk Pseudomonas putida W619 nucleoside diphosphate kinase YP_001751178.1 4775639 R 390235 CDS YP_001751179.1 170723491 6113299 complement(4776154..4776354) 1 NC_010501.1 TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: pen:PSEEN1016 hypothetical protein; FeS assembly protein IscX 4776354 6113299 PputW619_4330 Pseudomonas putida W619 FeS assembly protein IscX YP_001751179.1 4776154 R 390235 CDS YP_001751180.1 170723492 6113300 complement(4776365..4776706) 1 NC_010501.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pen:PSEEN1015 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 4776706 6113300 PputW619_4331 Pseudomonas putida W619 ferredoxin, 2Fe-2S type, ISC system YP_001751180.1 4776365 R 390235 CDS YP_001751181.1 170723493 6113301 complement(4776710..4778572) 1 NC_010501.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 4778572 hscA 6113301 hscA Pseudomonas putida W619 chaperone protein HscA YP_001751181.1 4776710 R 390235 CDS YP_001751182.1 170723494 6113302 complement(4778615..4779136) 1 NC_010501.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 4779136 hscB 6113302 hscB Pseudomonas putida W619 co-chaperone HscB YP_001751182.1 4778615 R 390235 CDS YP_001751183.1 170723495 6113303 complement(4779145..4779468) 1 NC_010501.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pen:PSEEN1012 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 4779468 6113303 PputW619_4334 Pseudomonas putida W619 iron-sulfur cluster assembly protein IscA YP_001751183.1 4779145 R 390235 CDS YP_001751184.1 170723496 6113304 complement(4779511..4779897) 1 NC_010501.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pfl:PFL_4964 scaffold protein; scaffold protein 4779897 6113304 PputW619_4335 Pseudomonas putida W619 scaffold protein YP_001751184.1 4779511 R 390235 CDS YP_001751185.1 170723497 6113305 complement(4779944..4781158) 1 NC_010501.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 4781158 6113305 PputW619_4336 Pseudomonas putida W619 cysteine desulfurase YP_001751185.1 4779944 R 390235 CDS YP_001751186.1 170723498 6113306 complement(4781211..4781663) 1 NC_010501.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN1009 iron-sulfur cluster assembly transcription factor IscR; BadM/Rrf2 family transcriptional regulator 4781663 6113306 PputW619_4337 Pseudomonas putida W619 BadM/Rrf2 family transcriptional regulator YP_001751186.1 4781211 R 390235 CDS YP_001751187.1 170723499 6113307 complement(4781882..4782667) 1 NC_010501.1 TIGRFAM: serine O-acetyltransferase; KEGG: pen:PSEEN1007 serine O-acetyltransferase; serine O-acetyltransferase 4782667 6113307 PputW619_4338 Pseudomonas putida W619 serine O-acetyltransferase YP_001751187.1 4781882 R 390235 CDS YP_001751188.1 170723500 6113308 complement(4782671..4783426) 1 NC_010501.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN1006 tRNA/rRNA methyltransferase, TrmH family, group 1; RNA methyltransferase 4783426 6113308 PputW619_4339 Pseudomonas putida W619 RNA methyltransferase YP_001751188.1 4782671 R 390235 CDS YP_001751189.1 170723501 6113309 4783577..4784395 1 NC_010501.1 PFAM: inositol monophosphatase; KEGG: pen:PSEEN1005 inositol-1-monophosphatase (IMPase) (inositol-1-phosphatase) (I-1-Pase); inositol-phosphate phosphatase 4784395 6113309 PputW619_4340 Pseudomonas putida W619 inositol-phosphate phosphatase YP_001751189.1 4783577 D 390235 CDS YP_001751190.1 170723502 6113310 complement(4784453..4784986) 1 NC_010501.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1004 hypothetical protein; hypothetical protein 4784986 6113310 PputW619_4341 Pseudomonas putida W619 hypothetical protein YP_001751190.1 4784453 R 390235 CDS YP_001751191.1 170723503 6113311 complement(4785119..4786027) 1 NC_010501.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 4786027 secF 6113311 secF Pseudomonas putida W619 preprotein translocase subunit SecF YP_001751191.1 4785119 R 390235 CDS YP_001751192.1 170723504 6113312 complement(4786038..4787900) 1 NC_010501.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 4787900 secD 6113312 secD Pseudomonas putida W619 preprotein translocase subunit SecD YP_001751192.1 4786038 R 390235 CDS YP_001751193.1 170723505 6113313 complement(4787963..4788298) 1 NC_010501.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 4788298 yajC 6113313 yajC Pseudomonas putida W619 preprotein translocase subunit YajC YP_001751193.1 4787963 R 390235 CDS YP_001751194.1 170723506 6113314 complement(4788343..4789476) 1 NC_010501.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 4789476 tgt 6113314 tgt Pseudomonas putida W619 queuine tRNA-ribosyltransferase YP_001751194.1 4788343 R 390235 CDS YP_001751195.1 170723507 6113315 complement(4789473..4790522) 1 NC_010501.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 4790522 queA 6113315 queA Pseudomonas putida W619 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001751195.1 4789473 R 390235 CDS YP_001751196.1 170723508 6113317 4790924..4792132 1 NC_010501.1 PFAM: integrase family protein; KEGG: pst:PSPTO_5344 site-specific recombinase, phage integrase family; integrase family protein 4792132 6113317 PputW619_4347 Pseudomonas putida W619 integrase family protein YP_001751196.1 4790924 D 390235 CDS YP_001751197.1 170723509 6113318 4792154..4793014 1 NC_010501.1 KEGG: aci:ACIAD2140 hypothetical protein; hypothetical protein 4793014 6113318 PputW619_4348 Pseudomonas putida W619 hypothetical protein YP_001751197.1 4792154 D 390235 CDS YP_001751198.1 170723510 6113319 4793114..4793338 1 NC_010501.1 PFAM: Prophage CP4-57 regulatory; KEGG: pin:Ping_0242 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 4793338 6113319 PputW619_4349 Pseudomonas putida W619 phage transcriptional regulator AlpA YP_001751198.1 4793114 D 390235 CDS YP_001751199.1 170723511 6113320 4794188..4794598 1 NC_010501.1 KEGG: pap:PSPA7_0363 virulence-associated protein E; virulence-associated protein E 4794598 6113320 PputW619_4350 Pseudomonas putida W619 virulence-associated protein E YP_001751199.1 4794188 D 390235 CDS YP_001751200.1 170723512 6113321 4794595..4795782 1 NC_010501.1 KEGG: pol:Bpro_2969 hypothetical protein; hypothetical protein 4795782 6113321 PputW619_4351 Pseudomonas putida W619 hypothetical protein YP_001751200.1 4794595 D 390235 CDS YP_001751201.1 170723513 6113322 4796191..4796415 1 NC_010501.1 hypothetical protein 4796415 6113322 PputW619_4352 Pseudomonas putida W619 hypothetical protein YP_001751201.1 4796191 D 390235 CDS YP_001751202.1 170723514 6113323 4796418..4798280 1 NC_010501.1 PFAM: peptidase S14 ClpP; KEGG: sbn:Sbal195_0787 peptidase S14 ClpP; peptidase S14 ClpP 4798280 6113323 PputW619_4353 Pseudomonas putida W619 peptidase S14 ClpP YP_001751202.1 4796418 D 390235 CDS YP_001751203.1 170723515 6113324 4798294..4799631 1 NC_010501.1 PFAM: integrase family protein; KEGG: vvy:VVA0857 phage integrase; integrase family protein 4799631 6113324 PputW619_4354 Pseudomonas putida W619 integrase family protein YP_001751203.1 4798294 D 390235 CDS YP_001751204.1 170723516 6113325 4800195..4800440 1 NC_010501.1 hypothetical protein 4800440 6113325 PputW619_4355 Pseudomonas putida W619 hypothetical protein YP_001751204.1 4800195 D 390235 CDS YP_001751205.1 170723517 6113326 complement(4800656..4801987) 1 NC_010501.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_4940 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 4801987 6113326 PputW619_4356 Pseudomonas putida W619 filamentation induced by cAMP protein fic YP_001751205.1 4800656 R 390235 CDS YP_001751206.1 170723518 6113327 4802338..4802961 1 NC_010501.1 KEGG: ppr:PBPRA0472 hypothetical protein; hypothetical protein 4802961 6113327 PputW619_4357 Pseudomonas putida W619 hypothetical protein YP_001751206.1 4802338 D 390235 CDS YP_001751207.1 170723519 6113328 4803161..4804084 1 NC_010501.1 PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN0996 hypothetical protein; hypothetical protein 4804084 6113328 PputW619_4358 Pseudomonas putida W619 hypothetical protein YP_001751207.1 4803161 D 390235 CDS YP_001751208.1 170723520 6113329 complement(4804056..4804823) 1 NC_010501.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0995 phosphonate ABC transporter, permease protein; phosphonate ABC transporter inner membrane subunit 4804823 6113329 PputW619_4359 Pseudomonas putida W619 phosphonate ABC transporter inner membrane subunit YP_001751208.1 4804056 R 390235 CDS YP_001751209.1 170723521 6113330 complement(4804820..4805647) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0994 phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4805647 6113330 PputW619_4360 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751209.1 4804820 R 390235 CDS YP_001751210.1 170723522 6113331 complement(4805641..4806435) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0993 phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein 4806435 6113331 PputW619_4361 Pseudomonas putida W619 ABC transporter-like protein YP_001751210.1 4805641 R 390235 CDS YP_001751211.1 170723523 6113332 complement(4806432..4807286) 1 NC_010501.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN0992 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 4807286 6113332 PputW619_4362 Pseudomonas putida W619 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001751211.1 4806432 R 390235 CDS YP_001751212.1 170723524 6113333 4807410..4808444 1 NC_010501.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 4808444 6113333 PputW619_4363 Pseudomonas putida W619 selenophosphate synthetase YP_001751212.1 4807410 D 390235 CDS YP_001751213.1 170723525 6113334 4808444..4809541 1 NC_010501.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4809541 6113334 PputW619_4364 Pseudomonas putida W619 tRNA 2-selenouridine synthase YP_001751213.1 4808444 D 390235 CDS YP_001751214.1 170723526 6113335 complement(4809649..4810035) 1 NC_010501.1 PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN0989 hypothetical protein; hypothetical protein 4810035 6113335 PputW619_4365 Pseudomonas putida W619 hypothetical protein YP_001751214.1 4809649 R 390235 CDS YP_001751215.1 170723527 6113336 complement(4810055..4810594) 1 NC_010501.1 KEGG: pen:PSEEN0987 hypothetical protein; hypothetical protein 4810594 6113336 PputW619_4366 Pseudomonas putida W619 hypothetical protein YP_001751215.1 4810055 R 390235 CDS YP_001751216.1 170723528 6113337 complement(4810591..4811154) 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0985 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4811154 6113337 PputW619_4367 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001751216.1 4810591 R 390235 CDS YP_001751217.1 170723529 6113338 complement(4811297..4811548) 1 NC_010501.1 KEGG: pen:PSEEN0608 hypothetical protein; hypothetical protein 4811548 6113338 PputW619_4368 Pseudomonas putida W619 hypothetical protein YP_001751217.1 4811297 R 390235 CDS YP_001751218.1 170723530 6113339 complement(4811541..4811795) 1 NC_010501.1 KEGG: pen:PSEEN0938 hypothetical protein; hypothetical protein 4811795 6113339 PputW619_4369 Pseudomonas putida W619 hypothetical protein YP_001751218.1 4811541 R 390235 CDS YP_001751219.1 170723531 6113340 complement(4812265..4812648) 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0966 hypothetical protein; hypothetical protein 4812648 6113340 PputW619_4370 Pseudomonas putida W619 hypothetical protein YP_001751219.1 4812265 R 390235 CDS YP_001751220.1 170723532 6113341 complement(4812802..4814010) 1 NC_010501.1 PFAM: aminotransferase class I and II; KEGG: pen:PSEEN0965 aminotransferase (transaminase); aminotransferase 4814010 6113341 PputW619_4371 Pseudomonas putida W619 aminotransferase YP_001751220.1 4812802 R 390235 CDS YP_001751221.1 170723533 6113342 complement(4814251..4815138) 1 NC_010501.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 4815138 6113342 PputW619_4372 Pseudomonas putida W619 protoheme IX farnesyltransferase YP_001751221.1 4814251 R 390235 CDS YP_001751222.1 170723534 6113343 complement(4815150..4815482) 1 NC_010501.1 TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: pen:PSEEN0959 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 4815482 6113343 PputW619_4373 Pseudomonas putida W619 cytochrome o ubiquinol oxidase subunit IV YP_001751222.1 4815150 R 390235 CDS YP_001751223.1 170723535 6113344 complement(4815482..4816105) 1 NC_010501.1 TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0958 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 4816105 6113344 PputW619_4374 Pseudomonas putida W619 cytochrome o ubiquinol oxidase subunit III YP_001751223.1 4815482 R 390235 CDS YP_001751224.1 170723536 6113345 complement(4816109..4818127) 1 NC_010501.1 KEGG: pen:PSEEN0957 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 4818127 6113345 PputW619_4375 Pseudomonas putida W619 cytochrome o ubiquinol oxidase subunit I YP_001751224.1 4816109 R 390235 CDS YP_001751225.1 170723537 6113346 complement(4818131..4819075) 1 NC_010501.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: pen:PSEEN0956 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 4819075 6113346 PputW619_4376 Pseudomonas putida W619 ubiquinol oxidase subunit II YP_001751225.1 4818131 R 390235 CDS YP_001751226.1 170723538 6113347 complement(4819634..4820140) 1 NC_010501.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 4820140 6113347 PputW619_4377 Pseudomonas putida W619 disulfide bond formation protein B YP_001751226.1 4819634 R 390235 CDS YP_001751227.1 170723539 6113348 complement(4820515..4821693) 1 NC_010501.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 4821693 6113348 PputW619_4378 Pseudomonas putida W619 nitric oxide dioxygenase YP_001751227.1 4820515 R 390235 CDS YP_001751228.1 170723540 6113349 4821849..4823399 1 NC_010501.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4823399 6113349 PputW619_4379 Pseudomonas putida W619 anaerobic nitric oxide reductase transcriptional regulator YP_001751228.1 4821849 D 390235 CDS YP_001751229.1 170723541 6113350 4823584..4835355 1 NC_010501.1 KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein 4835355 6113350 PputW619_4380 Pseudomonas putida W619 hypothetical protein YP_001751229.1 4823584 D 390235 CDS YP_001751230.1 170723542 6113351 4835419..4836852 1 NC_010501.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ses:SARI_00237 hypothetical protein; TolC family type I secretion outer membrane protein 4836852 6113351 PputW619_4381 Pseudomonas putida W619 TolC family type I secretion outer membrane protein YP_001751230.1 4835419 D 390235 CDS YP_001751231.1 170723543 6113352 4836849..4839017 1 NC_010501.1 KEGG: aeh:Mlg_2167 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 4839017 6113352 PputW619_4382 Pseudomonas putida W619 type I secretion system ATPase YP_001751231.1 4836849 D 390235 CDS YP_001751232.1 170723544 6113353 4839014..4840198 1 NC_010501.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ses:SARI_00235 hypothetical protein; HlyD family type I secretion membrane fusion protein 4840198 6113353 PputW619_4383 Pseudomonas putida W619 HlyD family type I secretion membrane fusion protein YP_001751232.1 4839014 D 390235 CDS YP_001751233.1 170723545 6113354 4840382..4841281 1 NC_010501.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN0950 chemotaxis signal transduction protein CheW-like; response regulator receiver modulated CheW protein 4841281 6113354 PputW619_4384 Pseudomonas putida W619 response regulator receiver modulated CheW protein YP_001751233.1 4840382 D 390235 CDS YP_001751234.1 170723546 6113355 4841378..4841689 1 NC_010501.1 KEGG: pen:PSEEN0948 hypothetical protein; hypothetical protein 4841689 6113355 PputW619_4385 Pseudomonas putida W619 hypothetical protein YP_001751234.1 4841378 D 390235 CDS YP_001751235.1 170723547 6113356 4841668..4842420 1 NC_010501.1 PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0947 hypothetical protein; hypothetical protein 4842420 6113356 PputW619_4386 Pseudomonas putida W619 hypothetical protein YP_001751235.1 4841668 D 390235 CDS YP_001751236.1 170723548 6113357 complement(4842533..4842784) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 4842784 6113357 PputW619_4387 Pseudomonas putida W619 hypothetical protein YP_001751236.1 4842533 R 390235 CDS YP_001751237.1 170723549 6113358 complement(4842781..4843170) 1 NC_010501.1 KEGG: pen:PSEEN0938 hypothetical protein; hypothetical protein 4843170 6113358 PputW619_4388 Pseudomonas putida W619 hypothetical protein YP_001751237.1 4842781 R 390235 CDS YP_001751238.1 170723550 6113359 4843512..4844675 1 NC_010501.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0945 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit 4844675 6113359 PputW619_4389 Pseudomonas putida W619 RND family efflux transporter MFP subunit YP_001751238.1 4843512 D 390235 CDS YP_001751239.1 170723551 6113360 4844672..4847764 1 NC_010501.1 PFAM: acriflavin resistance protein; KEGG: pen:PSEEN0944 multidrug transport protein; acriflavin resistance protein family; acriflavin resistance protein 4847764 6113360 PputW619_4390 Pseudomonas putida W619 acriflavin resistance protein YP_001751239.1 4844672 D 390235 CDS YP_001751240.1 170723552 6113361 4847774..4848448 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN0943 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator 4848448 6113361 PputW619_4391 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001751240.1 4847774 D 390235 CDS YP_001751241.1 170723553 6113362 4848423..4849835 1 NC_010501.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0942 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 4849835 6113362 PputW619_4392 Pseudomonas putida W619 heavy metal sensor signal transduction histidine kinase YP_001751241.1 4848423 D 390235 CDS YP_001751242.1 170723554 6113363 4849967..4850188 1 NC_010501.1 KEGG: pen:PSEEN0941 hypothetical protein; hypothetical protein 4850188 6113363 PputW619_4393 Pseudomonas putida W619 hypothetical protein YP_001751242.1 4849967 D 390235 CDS YP_001751243.1 170723555 6113364 4850393..4851727 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0940 porin OprD family; outer membrane porin 4851727 6113364 PputW619_4394 Pseudomonas putida W619 outer membrane porin YP_001751243.1 4850393 D 390235 CDS YP_001751244.1 170723556 6113365 4851987..4853483 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0937 hypothetical protein; diguanylate cyclase 4853483 6113365 PputW619_4395 Pseudomonas putida W619 diguanylate cyclase YP_001751244.1 4851987 D 390235 CDS YP_001751245.1 170723557 6113366 complement(4853480..4853956) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0936 hypothetical protein; hypothetical protein 4853956 6113366 PputW619_4396 Pseudomonas putida W619 hypothetical protein YP_001751245.1 4853480 R 390235 CDS YP_001751246.1 170723558 6113367 4854158..4854379 1 NC_010501.1 KEGG: pen:PSEEN0935 hypothetical protein; hypothetical protein 4854379 6113367 PputW619_4397 Pseudomonas putida W619 hypothetical protein YP_001751246.1 4854158 D 390235 CDS YP_001751247.1 170723559 6113368 complement(4854489..4856228) 1 NC_010501.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: pen:PSEEN0934 phosphotransferase system FruA, fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC 4856228 6113368 PputW619_4398 Pseudomonas putida W619 PTS system fructose subfamily transporter subunit IIC YP_001751247.1 4854489 R 390235 CDS YP_001751248.1 170723560 6113369 complement(4856225..4857172) 1 NC_010501.1 KEGG: pen:PSEEN0933 1-phosphofructokinase FruK; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 4857172 6113369 PputW619_4399 Pseudomonas putida W619 1-phosphofructokinase YP_001751248.1 4856225 R 390235 CDS YP_001751249.1 170723561 6113370 complement(4857173..4860025) 1 NC_010501.1 TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN0932 phosphotransferase system FruB, fructose-specific EI/HPr/EIIA components; phosphoenolpyruvate-protein phosphotransferase 4860025 6113370 PputW619_4400 Pseudomonas putida W619 phosphoenolpyruvate-protein phosphotransferase YP_001751249.1 4857173 R 390235 CDS YP_001751250.1 170723562 6113371 4860322..4861317 1 NC_010501.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 4861317 6113371 PputW619_4401 Pseudomonas putida W619 DNA-binding transcriptional regulator FruR YP_001751250.1 4860322 D 390235 CDS YP_001751251.1 170723563 6113372 4861320..4862096 1 NC_010501.1 PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN0930 deoxyribonuclease, TatD family (metal-dependent); TatD-related deoxyribonuclease 4862096 6113372 PputW619_4402 Pseudomonas putida W619 TatD-related deoxyribonuclease YP_001751251.1 4861320 D 390235 CDS YP_001751252.1 170723564 6113373 complement(4862103..4864115) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0929 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4864115 6113373 PputW619_4403 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751252.1 4862103 R 390235 CDS YP_001751253.1 170723565 6113374 complement(4864218..4865048) 1 NC_010501.1 KEGG: pen:PSEEN0928 inner membrane protein AmpE; signaling modulator of AmpD, AmpE 4865048 6113374 PputW619_4404 Pseudomonas putida W619 signaling modulator of AmpD, AmpE YP_001751253.1 4864218 R 390235 CDS YP_001751254.1 170723566 6113375 complement(4865045..4865617) 1 NC_010501.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0927 N-acetyl-anhydromuramyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 4865617 6113375 PputW619_4405 Pseudomonas putida W619 N-acetyl-anhydromuranmyl-L-alanine amidase YP_001751254.1 4865045 R 390235 CDS YP_001751255.1 170723567 6113376 complement(4865703..4867868) 1 NC_010501.1 PFAM: protein of unknown function DUF1631; KEGG: pen:PSEEN0926 hypothetical protein; hypothetical protein 4867868 6113376 PputW619_4406 Pseudomonas putida W619 hypothetical protein YP_001751255.1 4865703 R 390235 CDS YP_001751256.1 170723568 6113377 4868112..4868960 1 NC_010501.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 4868960 6113377 PputW619_4407 Pseudomonas putida W619 nicotinate-nucleotide pyrophosphorylase YP_001751256.1 4868112 D 390235 CDS YP_001751257.1 170723569 6113378 complement(4869034..4869996) 1 NC_010501.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0924 thioredoxin reductase; thioredoxin reductase 4869996 6113378 PputW619_4408 Pseudomonas putida W619 thioredoxin reductase YP_001751257.1 4869034 R 390235 CDS YP_001751258.1 170723570 6113379 4870327..4871055 1 NC_010501.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 4871055 6113379 PputW619_4409 Pseudomonas putida W619 putative sulfate transport protein CysZ YP_001751258.1 4870327 D 390235 CDS YP_001751259.1 170723571 6113380 complement(4871159..4872475) 1 NC_010501.1 KEGG: pen:PSEEN0922 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer 4872475 6113380 PputW619_4410 Pseudomonas putida W619 PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer YP_001751259.1 4871159 R 390235 CDS YP_001751260.1 170723572 6113381 4872650..4873864 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN0921 glycosyl transferase, group 1; glycosyl transferase group 1 protein 4873864 6113381 PputW619_4411 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001751260.1 4872650 D 390235 CDS YP_001751261.1 170723573 6113382 complement(4873833..4874936) 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN0920 FMN-linked oxidoreductase, Oye family; NADH:flavin oxidoreductase 4874936 6113382 PputW619_4412 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001751261.1 4873833 R 390235 CDS YP_001751262.1 170723574 6113383 complement(4875062..4875544) 1 NC_010501.1 PFAM: glutathione peroxidase; KEGG: pen:PSEEN0919 glutathione peroxidase; glutathione peroxidase 4875544 6113383 PputW619_4413 Pseudomonas putida W619 glutathione peroxidase YP_001751262.1 4875062 R 390235 CDS YP_001751263.1 170723575 6113384 complement(4875687..4876172) 1 NC_010501.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0918 peptidyl-prolyl cis-trans isomerase SlyD (FKBP-type); FKBP-type peptidylprolyl isomerase 4876172 6113384 PputW619_4414 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001751263.1 4875687 R 390235 CDS YP_001751264.1 170723576 6113385 4876505..4878592 1 NC_010501.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 4878592 6113385 PputW619_4415 Pseudomonas putida W619 phosphate acetyltransferase YP_001751264.1 4876505 D 390235 CDS YP_001751265.1 170723577 6113386 complement(4878713..4879435) 1 NC_010501.1 PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0915 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 4879435 6113386 PputW619_4416 Pseudomonas putida W619 OmpA/MotB domain-containing protein YP_001751265.1 4878713 R 390235 CDS YP_001751266.1 170723578 6113387 complement(4879545..4880189) 1 NC_010501.1 PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0914 hydrolase; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 4880189 6113387 PputW619_4417 Pseudomonas putida W619 beta-lactamase domain-containing protein YP_001751266.1 4879545 R 390235 CDS YP_001751267.1 170723579 6113388 complement(4880205..4880552) 1 NC_010501.1 toxin of the ChpB-ChpS toxin-antitoxin system; toxin ChpB 4880552 6113388 PputW619_4418 Pseudomonas putida W619 toxin ChpB YP_001751267.1 4880205 R 390235 CDS YP_001751268.1 170723580 6113389 complement(4880549..4880827) 1 NC_010501.1 PFAM: SpoVT/AbrB domain protein; KEGG: psb:Psyr_0889 SpoVT/AbrB-like; transcriptional regulator/antitoxin MazE 4880827 6113389 PputW619_4419 Pseudomonas putida W619 transcriptional regulator/antitoxin MazE YP_001751268.1 4880549 R 390235 CDS YP_001751269.1 170723581 6113390 complement(4881006..4881698) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; KEGG: pen:PSEEN0913 sensor histidine kinase; histidine kinase 4881698 6113390 PputW619_4420 Pseudomonas putida W619 histidine kinase YP_001751269.1 4881006 R 390235 CDS YP_001751270.1 170723582 6113391 complement(4881695..4883302) 1 NC_010501.1 PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0912 response regulator/TPR domain protein; response regulator receiver protein 4883302 6113391 PputW619_4421 Pseudomonas putida W619 response regulator receiver protein YP_001751270.1 4881695 R 390235 CDS YP_001751271.1 170723583 6113392 complement(4883462..4886179) 1 NC_010501.1 PFAM: regulatory protein LuxR; SMART: AAA ATPase; KEGG: pen:PSEEN0911 transcriptional regulator, LuxR family; ATP-dependent transcriptional regulator LuxR 4886179 6113392 PputW619_4422 Pseudomonas putida W619 ATP-dependent transcriptional regulator LuxR YP_001751271.1 4883462 R 390235 CDS YP_001751272.1 170723584 6113393 complement(4886453..4887817) 1 NC_010501.1 PFAM: protein of unknown function DUF1329; KEGG: pen:PSEEN0910 hypothetical protein; hypothetical protein 4887817 6113393 PputW619_4423 Pseudomonas putida W619 hypothetical protein YP_001751272.1 4886453 R 390235 CDS YP_001751273.1 170723585 6113394 complement(4887843..4889762) 1 NC_010501.1 PFAM: protein of unknown function DUF1302; KEGG: psb:Psyr_0991 protein of unknown function DUF1302; hypothetical protein 4889762 6113394 PputW619_4424 Pseudomonas putida W619 hypothetical protein YP_001751273.1 4887843 R 390235 CDS YP_001751274.1 170723586 6113395 complement(4890094..4891776) 1 NC_010501.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 4891776 6113395 PputW619_4425 Pseudomonas putida W619 long-chain-fatty-acid--CoA ligase YP_001751274.1 4890094 R 390235 CDS YP_001751275.1 170723587 6113396 4891938..4892903 1 NC_010501.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 4892903 6113396 PputW619_4426 Pseudomonas putida W619 glycerate dehydrogenase YP_001751275.1 4891938 D 390235 CDS YP_001751276.1 170723588 6113397 4892957..4893952 1 NC_010501.1 PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pen:PSEEN0906 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 4893952 6113397 PputW619_4427 Pseudomonas putida W619 rRNA (guanine-N(2)-)-methyltransferase YP_001751276.1 4892957 D 390235 CDS YP_001751277.1 170723589 6113398 4894202..4894786 1 NC_010501.1 PFAM: protein of unknown function UPF0016; KEGG: pen:PSEEN0905 hypothetical protein; hypothetical protein 4894786 6113398 PputW619_4428 Pseudomonas putida W619 hypothetical protein YP_001751277.1 4894202 D 390235 CDS YP_001751278.1 170723590 6113399 complement(4894859..4895674) 1 NC_010501.1 PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN0904 zinc-dependent peptidase, M48 family; peptidase M48 Ste24p 4895674 6113399 PputW619_4429 Pseudomonas putida W619 peptidase M48 Ste24p YP_001751278.1 4894859 R 390235 CDS YP_001751279.1 170723591 6113400 complement(4895772..4896392) 1 NC_010501.1 PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN0902 hypothetical protein; hypothetical protein 4896392 6113400 PputW619_4430 Pseudomonas putida W619 hypothetical protein YP_001751279.1 4895772 R 390235 CDS YP_001751280.1 170723592 6113401 complement(4896408..4896668) 1 NC_010501.1 KEGG: pen:PSEEN0901 hypothetical protein; hypothetical protein 4896668 6113401 PputW619_4431 Pseudomonas putida W619 hypothetical protein YP_001751280.1 4896408 R 390235 CDS YP_001751281.1 170723593 6113402 complement(4896668..4896853) 1 NC_010501.1 KEGG: pen:PSEEN0900 hypothetical protein; hypothetical protein 4896853 6113402 PputW619_4432 Pseudomonas putida W619 hypothetical protein YP_001751281.1 4896668 R 390235 CDS YP_001751282.1 170723594 6113403 4896976..4898145 1 NC_010501.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0898 hypothetical protein; phospholipid/glycerol acyltransferase 4898145 6113403 PputW619_4433 Pseudomonas putida W619 phospholipid/glycerol acyltransferase YP_001751282.1 4896976 D 390235 CDS YP_001751283.1 170723595 6113404 complement(4898177..4898437) 1 NC_010501.1 KEGG: pen:PSEEN0897 hypothetical protein; hypothetical protein 4898437 6113404 PputW619_4434 Pseudomonas putida W619 hypothetical protein YP_001751283.1 4898177 R 390235 CDS YP_001751284.1 170723596 6113405 4898598..4898804 1 NC_010501.1 KEGG: pen:PSEEN0896 hypothetical protein; hypothetical protein 4898804 6113405 PputW619_4435 Pseudomonas putida W619 hypothetical protein YP_001751284.1 4898598 D 390235 CDS YP_001751285.1 170723597 6113406 complement(4898879..4899463) 1 NC_010501.1 KEGG: pen:PSEEN0895 lipoprotein; lipoprotein 4899463 6113406 PputW619_4436 Pseudomonas putida W619 lipoprotein YP_001751285.1 4898879 R 390235 CDS YP_001751286.1 170723598 6113407 4899668..4899901 1 NC_010501.1 KEGG: pen:PSEEN0894 hypothetical protein; hypothetical protein 4899901 6113407 PputW619_4437 Pseudomonas putida W619 hypothetical protein YP_001751286.1 4899668 D 390235 CDS YP_001751287.1 170723599 6113408 4900505..4902010 1 NC_010501.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 4902010 6113408 PputW619_4438 Pseudomonas putida W619 malate:quinone oxidoreductase YP_001751287.1 4900505 D 390235 CDS YP_001751288.1 170723600 6113409 complement(4902179..4902469) 1 NC_010501.1 KEGG: pen:PSEEN0892 hypothetical protein; hypothetical protein 4902469 6113409 PputW619_4439 Pseudomonas putida W619 hypothetical protein YP_001751288.1 4902179 R 390235 CDS YP_001751289.1 170723601 6113410 complement(4902537..4903007) 1 NC_010501.1 KEGG: pen:PSEEN0891 hypothetical protein; hypothetical protein 4903007 6113410 PputW619_4440 Pseudomonas putida W619 hypothetical protein YP_001751289.1 4902537 R 390235 CDS YP_001751290.1 170723602 6113411 complement(4903061..4903534) 1 NC_010501.1 KEGG: pen:PSEEN0890 hypothetical protein; hypothetical protein 4903534 6113411 PputW619_4441 Pseudomonas putida W619 hypothetical protein YP_001751290.1 4903061 R 390235 CDS YP_001751291.1 170723603 6113412 complement(4903537..4904094) 1 NC_010501.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 4904094 6113412 PputW619_4442 Pseudomonas putida W619 hypoxanthine-guanine phosphoribosyltransferase YP_001751291.1 4903537 R 390235 CDS YP_001751292.1 170723604 6113413 4904255..4904893 1 NC_010501.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 4904893 upp 6113413 upp Pseudomonas putida W619 uracil phosphoribosyltransferase YP_001751292.1 4904255 D 390235 CDS YP_001751293.1 170723605 6113414 4904896..4906161 1 NC_010501.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0887 uracil permease; uracil-xanthine permease 4906161 6113414 PputW619_4444 Pseudomonas putida W619 uracil-xanthine permease YP_001751293.1 4904896 D 390235 CDS YP_001751294.1 170723606 6113415 complement(4906207..4907220) 1 NC_010501.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 4907220 hemH 6113415 hemH Pseudomonas putida W619 ferrochelatase YP_001751294.1 4906207 R 390235 CDS YP_001751295.1 170723607 6113416 complement(4907234..4908139) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; domain of unknown function DUF1731; KEGG: pen:PSEEN0885 hypothetical protein; NAD-dependent epimerase/dehydratase 4908139 6113416 PputW619_4446 Pseudomonas putida W619 NAD-dependent epimerase/dehydratase YP_001751295.1 4907234 R 390235 CDS YP_001751296.1 170723608 6113417 4908326..4909312 1 NC_010501.1 KEGG: pen:PSEEN0884 hypothetical protein; hypothetical protein 4909312 6113417 PputW619_4447 Pseudomonas putida W619 hypothetical protein YP_001751296.1 4908326 D 390235 CDS YP_001751297.1 170723609 6113418 4909419..4910387 1 NC_010501.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: pen:PSEEN0883 hypothetical protein; hypothetical protein 4910387 6113418 PputW619_4448 Pseudomonas putida W619 hypothetical protein YP_001751297.1 4909419 D 390235 CDS YP_001751298.1 170723610 6113419 4910377..4911258 1 NC_010501.1 PFAM: regulatory protein MerR; KEGG: pen:PSEEN0882 transcriptional regulator, MerR family; MerR family transcriptional regulator 4911258 6113419 PputW619_4449 Pseudomonas putida W619 MerR family transcriptional regulator YP_001751298.1 4910377 D 390235 CDS YP_001751299.1 170723611 6113420 4911266..4912708 1 NC_010501.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: pen:PSEEN0881 deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding; deoxyribodipyrimidine photo-lyase 4912708 6113420 PputW619_4450 Pseudomonas putida W619 deoxyribodipyrimidine photo-lyase YP_001751299.1 4911266 D 390235 CDS YP_001751300.1 170723612 6113421 4912705..4913403 1 NC_010501.1 KEGG: pen:PSEEN0880 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 4913403 6113421 PputW619_4451 Pseudomonas putida W619 short chain dehydrogenase/reductase family oxidoreductase YP_001751300.1 4912705 D 390235 CDS YP_001751301.1 170723613 6113422 complement(4913465..4913983) 1 NC_010501.1 KEGG: pfl:PFL_5155 hypothetical protein; hypothetical protein 4913983 6113422 PputW619_4452 Pseudomonas putida W619 hypothetical protein YP_001751301.1 4913465 R 390235 CDS YP_001751302.1 170723614 6113423 complement(4914089..4914886) 1 NC_010501.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4914886 6113423 PputW619_4453 Pseudomonas putida W619 glutamate racemase YP_001751302.1 4914089 R 390235 CDS YP_001751303.1 170723615 6113424 complement(4914879..4915634) 1 NC_010501.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 4915634 6113424 PputW619_4454 Pseudomonas putida W619 molybdopterin biosynthesis protein MoeB YP_001751303.1 4914879 R 390235 CDS YP_001751304.1 170723616 6113425 complement(4915628..4916458) 1 NC_010501.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: pen:PSEEN0877 methylase of polypeptide chain release factors; protein-(glutamine-N5) methyltransferase 4916458 6113425 PputW619_4455 Pseudomonas putida W619 protein-(glutamine-N5) methyltransferase YP_001751304.1 4915628 R 390235 CDS YP_001751305.1 170723617 6113426 complement(4916458..4917540) 1 NC_010501.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 4917540 prfA 6113426 prfA Pseudomonas putida W619 peptide chain release factor 1 YP_001751305.1 4916458 R 390235 CDS YP_001751306.1 170723618 6113427 complement(4917537..4918814) 1 NC_010501.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 4918814 hemA 6113427 hemA Pseudomonas putida W619 glutamyl-tRNA reductase YP_001751306.1 4917537 R 390235 CDS YP_001751307.1 170723619 6113428 4919003..4920724 1 NC_010501.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0860 hypothetical protein; hypothetical protein 4920724 6113428 PputW619_4458 Pseudomonas putida W619 hypothetical protein YP_001751307.1 4919003 D 390235 CDS YP_001751308.1 170723620 6113429 4920729..4921346 1 NC_010501.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 4921346 lolB 6113429 lolB Pseudomonas putida W619 outer membrane lipoprotein LolB YP_001751308.1 4920729 D 390235 CDS YP_001751309.1 170723621 6113430 4921350..4922210 1 NC_010501.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4922210 ipk 6113430 ipk Pseudomonas putida W619 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001751309.1 4921350 D 390235 CDS YP_001751310.1 170723622 6113432 4922362..4923294 1 NC_010501.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 4923294 6113432 PputW619_4461 Pseudomonas putida W619 ribose-phosphate pyrophosphokinase YP_001751310.1 4922362 D 390235 CDS YP_001751311.1 170723623 6113433 4923413..4924009 1 NC_010501.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 4924009 6113433 PputW619_4462 Pseudomonas putida W619 50S ribosomal protein L25/general stress protein Ctc YP_001751311.1 4923413 D 390235 CDS YP_001751312.1 170723624 6113434 4924086..4924670 1 NC_010501.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 4924670 6113434 PputW619_4463 Pseudomonas putida W619 peptidyl-tRNA hydrolase YP_001751312.1 4924086 D 390235 CDS YP_001751313.1 170723625 6113435 4924693..4925793 1 NC_010501.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 4925793 6113435 PputW619_4464 Pseudomonas putida W619 GTP-dependent nucleic acid-binding protein EngD YP_001751313.1 4924693 D 390235 CDS YP_001751314.1 170723626 6113436 4926069..4927790 1 NC_010501.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: reu:Reut_A0690 sulphate anion transporter; sulfate transporter 4927790 6113436 PputW619_4465 Pseudomonas putida W619 sulfate transporter YP_001751314.1 4926069 D 390235 CDS YP_001751315.1 170723627 6113437 complement(4927795..4928805) 1 NC_010501.1 KEGG: reh:H16_A2415 predicted membrane protein; membrane protein 4928805 6113437 PputW619_4466 Pseudomonas putida W619 membrane protein YP_001751315.1 4927795 R 390235 CDS YP_001751316.1 170723628 6113438 complement(4928795..4929880) 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD; secretion protein HlyD family protein 4929880 6113438 PputW619_4467 Pseudomonas putida W619 secretion protein HlyD family protein YP_001751316.1 4928795 R 390235 CDS YP_001751317.1 170723629 6113439 complement(4929880..4931391) 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2417 outer membrane heavy metal efflux protein; RND efflux system outer membrane lipoprotein 4931391 6113439 PputW619_4468 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001751317.1 4929880 R 390235 CDS YP_001751318.1 170723630 6113440 complement(4931405..4932502) 1 NC_010501.1 PFAM: protein of unknown function UPF0118; KEGG: reh:H16_A2418 predicted permease; hypothetical protein 4932502 6113440 PputW619_4469 Pseudomonas putida W619 hypothetical protein YP_001751318.1 4931405 R 390235 CDS YP_001751319.1 170723631 6113441 complement(4932542..4933738) 1 NC_010501.1 TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; KEGG: pfo:Pfl_3513 potassium efflux system protein; potassium efflux system protein 4933738 6113441 PputW619_4470 Pseudomonas putida W619 potassium efflux system protein YP_001751319.1 4932542 R 390235 CDS YP_001751320.1 170723632 6113442 complement(4933775..4934593) 1 NC_010501.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN2681 hypothetical protein; hypothetical protein 4934593 6113442 PputW619_4471 Pseudomonas putida W619 hypothetical protein YP_001751320.1 4933775 R 390235 CDS YP_001751321.1 170723633 6113443 complement(4934645..4935265) 1 NC_010501.1 PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN0851 hydrolase; isochorismatase hydrolase family; isochorismatase hydrolase 4935265 6113443 PputW619_4472 Pseudomonas putida W619 isochorismatase hydrolase YP_001751321.1 4934645 R 390235 CDS YP_001751322.1 170723634 6113444 4935512..4935901 1 NC_010501.1 KEGG: pen:PSEEN0850 hypothetical protein; hypothetical protein 4935901 6113444 PputW619_4473 Pseudomonas putida W619 hypothetical protein YP_001751322.1 4935512 D 390235 CDS YP_001751323.1 170723635 6113445 4935995..4937497 1 NC_010501.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN0849 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4937497 6113445 PputW619_4474 Pseudomonas putida W619 cytosine/purines uracil thiamine allantoin permease YP_001751323.1 4935995 D 390235 CDS YP_001751324.1 170723636 6113446 4937511..4938941 1 NC_010501.1 PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0848 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 4938941 6113446 PputW619_4475 Pseudomonas putida W619 aldehyde dehydrogenase YP_001751324.1 4937511 D 390235 CDS YP_001751325.1 170723637 6113447 complement(4939040..4941439) 1 NC_010501.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN0846 ion mechanosensitive channel; mechanosensitive ion channel MscS 4941439 6113447 PputW619_4476 Pseudomonas putida W619 mechanosensitive ion channel MscS YP_001751325.1 4939040 R 390235 CDS YP_001751326.1 170723638 6113448 complement(4941496..4942548) 1 NC_010501.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN0845 O6-methylguanine-DNA methyltransferase; AraC family transcriptional regulator 4942548 6113448 PputW619_4477 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751326.1 4941496 R 390235 CDS YP_001751327.1 170723639 6113449 complement(4942579..4943205) 1 NC_010501.1 PFAM: HhH-GPD family protein; KEGG: pen:PSEEN0843 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II 4943205 6113449 PputW619_4478 Pseudomonas putida W619 DNA-3-methyladenine glycosylase II YP_001751327.1 4942579 R 390235 CDS YP_001751328.1 170723640 6113450 4943375..4943890 1 NC_010501.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4943890 6113450 PputW619_4479 Pseudomonas putida W619 ECF subfamily RNA polymerase sigma-24 factor YP_001751328.1 4943375 D 390235 CDS YP_001751329.1 170723641 6113451 4943877..4944833 1 NC_010501.1 PFAM: FecR protein; KEGG: pae:PA2467 probable transmembrane sensor; anti-FecI sigma factor FecR 4944833 6113451 PputW619_4480 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001751329.1 4943877 D 390235 CDS YP_001751330.1 170723642 6113452 4944930..4947404 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; TonB-dependent siderophore receptor 4947404 6113452 PputW619_4481 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001751330.1 4944930 D 390235 CDS YP_001751331.1 170723643 6113453 complement(4947504..4948664) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0842 major facilitator family transporter; major facilitator transporter 4948664 6113453 PputW619_4482 Pseudomonas putida W619 major facilitator transporter YP_001751331.1 4947504 R 390235 CDS YP_001751332.1 170723644 6113454 complement(4949096..4950307) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0841 fosmidomycin/multidrug transport protein (MFS superfamily); major facilitator transporter 4950307 6113454 PputW619_4483 Pseudomonas putida W619 major facilitator transporter YP_001751332.1 4949096 R 390235 CDS YP_001751333.1 170723645 6113455 4950487..4951419 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN0840 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4951419 6113455 PputW619_4484 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001751333.1 4950487 D 390235 CDS YP_001751334.1 170723646 6113457 complement(4951668..4952279) 1 NC_010501.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0839 transporter, LysE family; lysine exporter protein LysE/YggA 4952279 6113457 PputW619_4485 Pseudomonas putida W619 lysine exporter protein LysE/YggA YP_001751334.1 4951668 R 390235 CDS YP_001751335.1 170723647 6113458 4952425..4953339 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0838 transcriptional regulator, LysR family; LysR family transcriptional regulator 4953339 6113458 PputW619_4486 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751335.1 4952425 D 390235 CDS YP_001751336.1 170723648 6113459 complement(4953279..4953863) 1 NC_010501.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: acb:A1S_1248 hypothetical protein; hypothetical protein 4953863 6113459 PputW619_4487 Pseudomonas putida W619 hypothetical protein YP_001751336.1 4953279 R 390235 CDS YP_001751337.1 170723649 6113460 complement(4953970..4954425) 1 NC_010501.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0835 ribosomal-protein-alanine acetyltransferase RimI; ribosomal-protein-alanine acetyltransferase 4954425 6113460 PputW619_4488 Pseudomonas putida W619 ribosomal-protein-alanine acetyltransferase YP_001751337.1 4953970 R 390235 CDS YP_001751338.1 170723650 6113461 complement(4954422..4955246) 1 NC_010501.1 KEGG: pen:PSEEN0834 hypothetical protein; hypothetical protein 4955246 6113461 PputW619_4489 Pseudomonas putida W619 hypothetical protein YP_001751338.1 4954422 R 390235 CDS YP_001751339.1 170723651 6113462 4955432..4956709 1 NC_010501.1 KEGG: pen:PSEEN0833 hypothetical protein; hypothetical protein 4956709 6113462 PputW619_4490 Pseudomonas putida W619 hypothetical protein YP_001751339.1 4955432 D 390235 CDS YP_001751340.1 170723652 6113463 4956699..4957406 1 NC_010501.1 KEGG: pen:PSEEN0832 hypothetical protein; hypothetical protein 4957406 6113463 PputW619_4491 Pseudomonas putida W619 hypothetical protein YP_001751340.1 4956699 D 390235 CDS YP_001751341.1 170723653 6113464 4957403..4960234 1 NC_010501.1 KEGG: pen:PSEEN0831 hypothetical protein; hypothetical protein 4960234 6113464 PputW619_4492 Pseudomonas putida W619 hypothetical protein YP_001751341.1 4957403 D 390235 CDS YP_001751342.1 170723654 6113465 complement(4960353..4960814) 1 NC_010501.1 PFAM: CreA family protein; KEGG: pfo:Pfl_4856 CreA; CreA family protein 4960814 6113465 PputW619_4493 Pseudomonas putida W619 CreA family protein YP_001751342.1 4960353 R 390235 CDS YP_001751343.1 170723655 6113466 complement(4960811..4961929) 1 NC_010501.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4961929 6113466 PputW619_4494 Pseudomonas putida W619 gamma-glutamyl kinase YP_001751343.1 4960811 R 390235 CDS YP_001751344.1 170723656 6113467 complement(4962017..4963243) 1 NC_010501.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 4963243 obgE 6113467 obgE Pseudomonas putida W619 GTPase ObgE YP_001751344.1 4962017 R 390235 CDS YP_001751345.1 170723657 6113468 complement(4963434..4963691) 1 NC_010501.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 4963691 rpmA 6113468 rpmA Pseudomonas putida W619 50S ribosomal protein L27 YP_001751345.1 4963434 R 390235 CDS YP_001751346.1 170723658 6113469 complement(4963730..4964044) 1 NC_010501.1 PFAM: ribosomal protein L21; KEGG: pen:PSEEN0825 50S ribosomal subunit protein L21; 50S ribosomal protein L21 4964044 rplU 6113469 rplU Pseudomonas putida W619 50S ribosomal protein L21 YP_001751346.1 4963730 R 390235 CDS YP_001751347.1 170723659 6113470 4964290..4965258 1 NC_010501.1 PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0824 octaprenyl-diphosphate synthase; polyprenyl synthetase 4965258 6113470 PputW619_4498 Pseudomonas putida W619 polyprenyl synthetase YP_001751347.1 4964290 D 390235 CDS YP_001751348.1 170723660 6113471 4965419..4965760 1 NC_010501.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pen:PSEEN0823 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 4965760 6113471 PputW619_4499 Pseudomonas putida W619 alkylphosphonate utilization operon protein PhnA YP_001751348.1 4965419 D 390235 CDS YP_001751349.1 170723661 6113472 4965843..4966088 1 NC_010501.1 KEGG: pen:PSEEN0822 hypothetical protein; hypothetical protein 4966088 6113472 PputW619_4500 Pseudomonas putida W619 hypothetical protein YP_001751349.1 4965843 D 390235 CDS YP_001751350.1 170723662 6113473 complement(4966206..4966823) 1 NC_010501.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0821 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 4966823 6113473 PputW619_4501 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001751350.1 4966206 R 390235 CDS YP_001751351.1 170723663 6113474 complement(4966909..4967214) 1 NC_010501.1 KEGG: pen:PSEEN0820 hypothetical protein; hypothetical protein 4967214 6113474 PputW619_4502 Pseudomonas putida W619 hypothetical protein YP_001751351.1 4966909 R 390235 CDS YP_001751352.1 170723664 6113475 complement(4967359..4967847) 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0819 hypothetical protein; hypothetical protein 4967847 6113475 PputW619_4503 Pseudomonas putida W619 hypothetical protein YP_001751352.1 4967359 R 390235 CDS YP_001751353.1 170723665 6113476 complement(4968049..4968387) 1 NC_010501.1 KEGG: pen:PSEEN0818 hypothetical protein; hypothetical protein 4968387 6113476 PputW619_4504 Pseudomonas putida W619 hypothetical protein YP_001751353.1 4968049 R 390235 CDS YP_001751354.1 170723666 6113477 complement(4968551..4970989) 1 NC_010501.1 KEGG: pen:PSEEN0817 ATP-dependent protease; ATP-dependent protease 4970989 6113477 PputW619_4505 Pseudomonas putida W619 ATP-dependent protease YP_001751354.1 4968551 R 390235 CDS YP_001751355.1 170723667 6113478 4971241..4971729 1 NC_010501.1 KEGG: pen:PSEEN0816 hypothetical protein; hypothetical protein 4971729 6113478 PputW619_4506 Pseudomonas putida W619 hypothetical protein YP_001751355.1 4971241 D 390235 CDS YP_001751356.1 170723668 6113479 4971804..4973657 1 NC_010501.1 KEGG: pen:PSEEN0815 hypothetical protein; hypothetical protein 4973657 6113479 PputW619_4507 Pseudomonas putida W619 hypothetical protein YP_001751356.1 4971804 D 390235 CDS YP_001751357.1 170723669 6113480 4973859..4974356 1 NC_010501.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pen:PSEEN0813 transcription elongation factor; GreA/GreB family elongation factor 4974356 6113480 PputW619_4508 Pseudomonas putida W619 GreA/GreB family elongation factor YP_001751357.1 4973859 D 390235 CDS YP_001751358.1 170723670 6113481 complement(4974494..4975834) 1 NC_010501.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 4975834 6113481 PputW619_4509 Pseudomonas putida W619 glutamate dehydrogenase YP_001751358.1 4974494 R 390235 CDS YP_001751359.1 170723671 6113482 complement(4976079..4977746) 1 NC_010501.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 4977746 6113482 PputW619_4510 Pseudomonas putida W619 putative ABC transporter ATP-binding protein YP_001751359.1 4976079 R 390235 CDS YP_001751360.1 170723672 6113483 complement(4977954..4978346) 1 NC_010501.1 KEGG: pen:PSEEN0809 hypothetical protein; hypothetical protein 4978346 6113483 PputW619_4511 Pseudomonas putida W619 hypothetical protein YP_001751360.1 4977954 R 390235 CDS YP_001751361.1 170723673 6113484 4978604..4982434 1 NC_010501.1 KEGG: pen:PSEEN0807 sensory box protein(GGDEF domain/EAL domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4982434 6113484 PputW619_4512 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001751361.1 4978604 D 390235 CDS YP_001751362.1 170723674 6113485 4982630..4983883 1 NC_010501.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4983883 glyA 6113485 glyA Pseudomonas putida W619 serine hydroxymethyltransferase YP_001751362.1 4982630 D 390235 CDS YP_001751363.1 170723675 6113486 4984047..4985000 1 NC_010501.1 PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN4637 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 4985000 6113486 PputW619_4514 Pseudomonas putida W619 bile acid:sodium symporter YP_001751363.1 4984047 D 390235 CDS YP_001751364.1 170723676 6113487 complement(4985060..4986250) 1 NC_010501.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_5406 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 4986250 6113487 PputW619_4515 Pseudomonas putida W619 Bcr/CflA subfamily drug resistance transporter YP_001751364.1 4985060 R 390235 CDS YP_001751365.1 170723677 6113488 complement(4986300..4986899) 1 NC_010501.1 KEGG: bvi:Bcep1808_5407 hypothetical protein; hypothetical protein 4986899 6113488 PputW619_4516 Pseudomonas putida W619 hypothetical protein YP_001751365.1 4986300 R 390235 CDS YP_001751366.1 170723678 6113489 complement(4986916..4988397) 1 NC_010501.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bvi:Bcep1808_5408 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4988397 6113489 PputW619_4517 Pseudomonas putida W619 AMP-dependent synthetase and ligase YP_001751366.1 4986916 R 390235 CDS YP_001751367.1 170723679 6113490 complement(4988394..4989326) 1 NC_010501.1 KEGG: bvi:Bcep1808_5409 taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA 4989326 6113490 PputW619_4518 Pseudomonas putida W619 taurine catabolism dioxygenase TauD/TfdA YP_001751367.1 4988394 R 390235 CDS YP_001751368.1 170723680 6113491 complement(4989455..4990393) 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_5410 transcriptional regulator, LysR family; LysR family transcriptional regulator 4990393 6113491 PputW619_4519 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751368.1 4989455 R 390235 CDS YP_001751369.1 170723681 6113492 complement(4990419..4990925) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: zmo:ZMO0054 MarR family transcriptional regulator; MarR family transcriptional regulator 4990925 6113492 PputW619_4520 Pseudomonas putida W619 MarR family transcriptional regulator YP_001751369.1 4990419 R 390235 CDS YP_001751370.1 170723682 6113493 4991051..4991863 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: zmo:ZMO0053 putative beta-ketoadipate enol-lactone hydrolase; alpha/beta hydrolase fold family protein 4991863 6113493 PputW619_4521 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001751370.1 4991051 D 390235 CDS YP_001751371.1 170723683 6113494 4991856..4993028 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: zmo:ZMO0052 cyanate permease; major facilitator transporter 4993028 6113494 PputW619_4522 Pseudomonas putida W619 major facilitator transporter YP_001751371.1 4991856 D 390235 CDS YP_001751372.1 170723684 6113495 complement(4993183..4993404) 1 NC_010501.1 KEGG: pen:PSEEN4652 hypothetical protein; hypothetical protein 4993404 6113495 PputW619_4523 Pseudomonas putida W619 hypothetical protein YP_001751372.1 4993183 R 390235 CDS YP_001751373.1 170723685 6113496 complement(4994574..4995152) 1 NC_010501.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: bvi:Bcep1808_6200 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein 4995152 6113496 PputW619_4524 Pseudomonas putida W619 plasmid pRiA4b ORF-3 family protein YP_001751373.1 4994574 R 390235 CDS YP_001751374.1 170723686 6113497 4995670..4995864 1 NC_010501.1 KEGG: pen:PSEEN2864 transposase, IS256 family; IS256 family transposase 4995864 6113497 PputW619_4525 Pseudomonas putida W619 IS256 family transposase YP_001751374.1 4995670 D 390235 CDS YP_001751375.1 170723687 6113498 complement(4996453..4996839) 1 NC_010501.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1068 4-carboxymuconolactone decarboxylase PcaC; carboxymuconolactone decarboxylase 4996839 6113498 PputW619_4526 Pseudomonas putida W619 carboxymuconolactone decarboxylase YP_001751375.1 4996453 R 390235 CDS YP_001751376.1 170723688 6113499 complement(4996865..4998139) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pfo:Pfl_3451 outer membrane porin; outer membrane porin 4998139 6113499 PputW619_4527 Pseudomonas putida W619 outer membrane porin YP_001751376.1 4996865 R 390235 CDS YP_001751377.1 170723689 6113500 complement(4998283..4998810) 1 NC_010501.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dac:Daci_5297 cupin 2 conserved barrel domain protein; cupin 4998810 6113500 PputW619_4528 Pseudomonas putida W619 cupin YP_001751377.1 4998283 R 390235 CDS YP_001751378.1 170723690 6113501 complement(4998963..5000000) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pde:Pden_4528 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 5000000 6113501 PputW619_4529 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751378.1 4998963 R 390235 CDS YP_001751379.1 170723691 6113502 5000135..5001076 1 NC_010501.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: azc:AZC_3212 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 5001076 6113502 PputW619_4530 Pseudomonas putida W619 3-hydroxyacyl-CoA dehydrogenase YP_001751379.1 5000135 D 390235 CDS YP_001751380.1 170723692 6113503 5001082..5002020 1 NC_010501.1 PFAM: protein of unknown function DUF849; KEGG: bpt:Bpet3914 hypothetical protein; hypothetical protein 5002020 6113503 PputW619_4531 Pseudomonas putida W619 hypothetical protein YP_001751380.1 5001082 D 390235 CDS YP_001751381.1 170723693 6113504 5002132..5003496 1 NC_010501.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B4121 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter 5003496 6113504 PputW619_4532 Pseudomonas putida W619 major facilitator transporter YP_001751381.1 5002132 D 390235 CDS YP_001751382.1 170723694 6113505 complement(5003735..5004379) 1 NC_010501.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: oan:Oant_3278 resolvase domain protein; resolvase domain-containing protein 5004379 6113505 PputW619_4533 Pseudomonas putida W619 resolvase domain-containing protein YP_001751382.1 5003735 R 390235 CDS YP_001751383.1 170723695 6113506 complement(5004574..5005338) 1 NC_010501.1 KEGG: bpa:BPP1266 hypothetical protein; hypothetical protein 5005338 6113506 PputW619_4534 Pseudomonas putida W619 hypothetical protein YP_001751383.1 5004574 R 390235 CDS YP_001751384.1 170723696 6113507 complement(5006142..5007563) 1 NC_010501.1 PFAM: integrase family protein; KEGG: rme:Rmet_2561 phage integrase; integrase family protein 5007563 6113507 PputW619_4535 Pseudomonas putida W619 integrase family protein YP_001751384.1 5006142 R 390235 CDS YP_001751385.1 170723697 6113509 complement(5007720..5008130) 1 NC_010501.1 PFAM: Fimbrial protein pilin; KEGG: pen:PSEEN4666 type IV pili prepilin PilA; fimbrial protein pilin 5008130 6113509 PputW619_4536 Pseudomonas putida W619 fimbrial protein pilin YP_001751385.1 5007720 R 390235 CDS YP_001751386.1 170723698 6113510 5008346..5009554 1 NC_010501.1 PFAM: type II secretion system protein; KEGG: pen:PSEEN4667 type IV fimbrial assembly protein; type II secretion system protein 5009554 6113510 PputW619_4537 Pseudomonas putida W619 type II secretion system protein YP_001751386.1 5008346 D 390235 CDS YP_001751387.1 170723699 6113511 5009557..5010423 1 NC_010501.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: pen:PSEEN4668 type IV pili prepilin peptidase PilD/XcpA; prepilin peptidase 5010423 6113511 PputW619_4538 Pseudomonas putida W619 prepilin peptidase YP_001751387.1 5009557 D 390235 CDS YP_001751388.1 170723700 6113512 5010423..5011046 1 NC_010501.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 5011046 coaE 6113512 coaE Pseudomonas putida W619 dephospho-CoA kinase YP_001751388.1 5010423 D 390235 CDS YP_001751389.1 170723701 6113513 5011043..5011243 1 NC_010501.1 PFAM: protein of unknown function DUF329; KEGG: pen:PSEEN4670 hypothetical protein; zinc-binding protein 5011243 6113513 PputW619_4540 Pseudomonas putida W619 zinc-binding protein YP_001751389.1 5011043 D 390235 CDS YP_001751390.1 170723702 6113514 complement(5011374..5012114) 1 NC_010501.1 KEGG: pen:PSEEN4671 hypothetical protein; hypothetical protein 5012114 6113514 PputW619_4541 Pseudomonas putida W619 hypothetical protein YP_001751390.1 5011374 R 390235 CDS YP_001751391.1 170723703 6113515 5012149..5012778 1 NC_010501.1 PFAM: Protein of unknown function DUF1780; KEGG: pen:PSEEN4673 hypothetical protein; hypothetical protein 5012778 6113515 PputW619_4542 Pseudomonas putida W619 hypothetical protein YP_001751391.1 5012149 D 390235 CDS YP_001751392.1 170723704 6113516 5012911..5013084 1 NC_010501.1 KEGG: pen:PSEEN4674 hypothetical protein; hypothetical protein 5013084 6113516 PputW619_4543 Pseudomonas putida W619 hypothetical protein YP_001751392.1 5012911 D 390235 CDS YP_001751393.1 170723705 6113517 5013169..5014464 1 NC_010501.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN4675 NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5014464 6113517 PputW619_4544 Pseudomonas putida W619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001751393.1 5013169 D 390235 CDS YP_001751394.1 170723706 6113521 complement(5015391..5017955) 1 NC_010501.1 KEGG: pen:PSEEN4678 ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 5017955 6113521 PputW619_4545 Pseudomonas putida W619 ATP-dependent chaperone ClpB YP_001751394.1 5015391 R 390235 CDS YP_001751395.1 170723707 6113522 complement(5018142..5018882) 1 NC_010501.1 PFAM: protein of unknown function DUF152; KEGG: pen:PSEEN4679 hypothetical protein; hypothetical protein 5018882 6113522 PputW619_4546 Pseudomonas putida W619 hypothetical protein YP_001751395.1 5018142 R 390235 CDS YP_001751396.1 170723708 6113523 complement(5018879..5019937) 1 NC_010501.1 KEGG: pen:PSEEN4680 23S rRNA pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 5019937 6113523 PputW619_4547 Pseudomonas putida W619 RluA family pseudouridine synthase YP_001751396.1 5018879 R 390235 CDS YP_001751397.1 170723709 6113524 5019989..5021008 1 NC_010501.1 KEGG: pen:PSEEN4681 competence lipoprotein ComL; competence lipoprotein ComL 5021008 6113524 PputW619_4548 Pseudomonas putida W619 competence lipoprotein ComL YP_001751397.1 5019989 D 390235 CDS YP_001751398.1 170723710 6113525 5021102..5021332 1 NC_010501.1 KEGG: pen:PSEEN4682 hypothetical protein; hypothetical protein 5021332 6113525 PputW619_4549 Pseudomonas putida W619 hypothetical protein YP_001751398.1 5021102 D 390235 CDS YP_001751399.1 170723711 6113526 complement(5021435..5022532) 1 NC_010501.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4683 oxidoreductase, FAD-binding; glycine oxidase ThiO 5022532 6113526 PputW619_4550 Pseudomonas putida W619 glycine oxidase ThiO YP_001751399.1 5021435 R 390235 CDS YP_001751400.1 170723712 6113527 complement(5022586..5022975) 1 NC_010501.1 KEGG: pen:PSEEN4684 type IV pili biogenesis protein PilE; type IV pili biogenesis protein PilE 5022975 6113527 PputW619_4551 Pseudomonas putida W619 type IV pili biogenesis protein PilE YP_001751400.1 5022586 R 390235 CDS YP_001751401.1 170723713 6113528 complement(5022977..5023450) 1 NC_010501.1 KEGG: pen:PSEEN4685 hypothetical protein; hypothetical protein 5023450 6113528 PputW619_4552 Pseudomonas putida W619 hypothetical protein YP_001751401.1 5022977 R 390235 CDS YP_001751402.1 170723714 6113529 complement(5023447..5024094) 1 NC_010501.1 KEGG: pen:PSEEN4686 hypothetical protein; hypothetical protein 5024094 6113529 PputW619_4553 Pseudomonas putida W619 hypothetical protein YP_001751402.1 5023447 R 390235 CDS YP_001751403.1 170723715 6113530 complement(5024091..5024246) 1 NC_010501.1 hypothetical protein 5024246 6113530 PputW619_4554 Pseudomonas putida W619 hypothetical protein YP_001751403.1 5024091 R 390235 CDS YP_001751404.1 170723716 6113531 5024410..5024901 1 NC_010501.1 KEGG: pen:PSEEN4688 type IV pili biogenesis protein FimT; type IV pili biogenesis protein FimT 5024901 6113531 PputW619_4555 Pseudomonas putida W619 type IV pili biogenesis protein FimT YP_001751404.1 5024410 D 390235 CDS YP_001751405.1 170723717 6113532 complement(5024902..5025849) 1 NC_010501.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 5025849 ispH 6113532 ispH Pseudomonas putida W619 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001751405.1 5024902 R 390235 CDS YP_001751406.1 170723718 6113533 complement(5025864..5026301) 1 NC_010501.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN4690 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 5026301 6113533 PputW619_4557 Pseudomonas putida W619 FKBP-type peptidylprolyl isomerase YP_001751406.1 5025864 R 390235 CDS YP_001751407.1 170723719 6113534 complement(5026294..5026809) 1 NC_010501.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 5026809 lspA 6113534 lspA Pseudomonas putida W619 lipoprotein signal peptidase YP_001751407.1 5026294 R 390235 CDS YP_001751408.1 170723720 6113535 complement(5026802..5029633) 1 NC_010501.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 5029633 ileS 6113535 ileS Pseudomonas putida W619 isoleucyl-tRNA synthetase YP_001751408.1 5026802 R 390235 CDS YP_001751409.1 170723721 6113536 complement(5029630..5030580) 1 NC_010501.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 5030580 6113536 PputW619_4560 Pseudomonas putida W619 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001751409.1 5029630 R 390235 CDS YP_001751410.1 170723722 6113537 complement(5030699..5032237) 1 NC_010501.1 TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pen:PSEEN4694 virulence factor MviN family; integral membrane protein MviN 5032237 6113537 PputW619_4561 Pseudomonas putida W619 integral membrane protein MviN YP_001751410.1 5030699 R 390235 CDS YP_001751411.1 170723723 6113538 5032488..5032766 1 NC_010501.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5032766 rpsT 6113538 rpsT Pseudomonas putida W619 30S ribosomal protein S20 YP_001751411.1 5032488 D 390235 CDS YP_001751412.1 170723724 6113539 complement(5032907..5035207) 1 NC_010501.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN4696 paraquat-inducible protein B; hypothetical protein 5035207 6113539 PputW619_4563 Pseudomonas putida W619 hypothetical protein YP_001751412.1 5032907 R 390235 CDS YP_001751413.1 170723725 6113540 complement(5035200..5035823) 1 NC_010501.1 PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4697 paraquat-inducible protein A; paraquat-inducible protein A 5035823 6113540 PputW619_4564 Pseudomonas putida W619 paraquat-inducible protein A YP_001751413.1 5035200 R 390235 CDS YP_001751414.1 170723726 6113541 complement(5035810..5036469) 1 NC_010501.1 PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4698 paraquat-inducible protein A; paraquat-inducible protein A 5036469 6113541 PputW619_4565 Pseudomonas putida W619 paraquat-inducible protein A YP_001751414.1 5035810 R 390235 CDS YP_001751415.1 170723727 6113547 complement(5042339..5043832) 1 NC_010501.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0682 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 5043832 6113547 PputW619_4566 Pseudomonas putida W619 methylmalonate-semialdehyde dehydrogenase YP_001751415.1 5042339 R 390235 CDS YP_001751416.1 170723728 6113548 complement(5043906..5045252) 1 NC_010501.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 5045252 6113548 PputW619_4567 Pseudomonas putida W619 beta alanine--pyruvate transaminase YP_001751416.1 5043906 R 390235 CDS YP_001751417.1 170723729 6113549 5045371..5046288 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0680 transcriptional regulator, LysR family; LysR family transcriptional regulator 5046288 6113549 PputW619_4568 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751417.1 5045371 D 390235 CDS YP_001751418.1 170723730 6113550 5046379..5047041 1 NC_010501.1 PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN0679 transcriptional regulator, TetR/AcrR family; TetR family transcriptional regulator 5047041 6113550 PputW619_4569 Pseudomonas putida W619 TetR family transcriptional regulator YP_001751418.1 5046379 D 390235 CDS YP_001751419.1 170723731 6113551 5047051..5047635 1 NC_010501.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: pen:PSEEN0678 hypothetical protein; hypothetical protein 5047635 6113551 PputW619_4570 Pseudomonas putida W619 hypothetical protein YP_001751419.1 5047051 D 390235 CDS YP_001751420.1 170723732 6113552 5047999..5048685 1 NC_010501.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN0676 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 5048685 6113552 PputW619_4571 Pseudomonas putida W619 short chain dehydrogenase YP_001751420.1 5047999 D 390235 CDS YP_001751421.1 170723733 6113553 5048792..5049739 1 NC_010501.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 5049739 6113553 PputW619_4572 Pseudomonas putida W619 adenosine deaminase YP_001751421.1 5048792 D 390235 CDS YP_001751422.1 170723734 6113554 complement(5049758..5050465) 1 NC_010501.1 SMART: regulatory protein ArsR; KEGG: pen:PSEEN0673 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 5050465 6113554 PputW619_4573 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001751422.1 5049758 R 390235 CDS YP_001751423.1 170723735 6113555 5050964..5051161 1 NC_010501.1 KEGG: pfl:PFL_0714 hypothetical protein; hypothetical protein 5051161 6113555 PputW619_4574 Pseudomonas putida W619 hypothetical protein YP_001751423.1 5050964 D 390235 CDS YP_001751424.1 170723736 6113556 complement(5051112..5052293) 1 NC_010501.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter 5052293 6113556 PputW619_4575 Pseudomonas putida W619 Bcr/CflA subfamily drug resistance transporter YP_001751424.1 5051112 R 390235 CDS YP_001751425.1 170723737 6113557 complement(5052402..5052599) 1 NC_010501.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pen:PSEEN0671 copper-binding protein; heavy metal transport/detoxification protein 5052599 6113557 PputW619_4576 Pseudomonas putida W619 heavy metal transport/detoxification protein YP_001751425.1 5052402 R 390235 CDS YP_001751426.1 170723738 6113558 5052745..5053131 1 NC_010501.1 KEGG: pen:PSEEN0670 hypothetical protein; hypothetical protein 5053131 6113558 PputW619_4577 Pseudomonas putida W619 hypothetical protein YP_001751426.1 5052745 D 390235 CDS YP_001751427.1 170723739 6113559 5053184..5055583 1 NC_010501.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN0669 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 5055583 6113559 PputW619_4578 Pseudomonas putida W619 heavy metal translocating P-type ATPase YP_001751427.1 5053184 D 390235 CDS YP_001751428.1 170723740 6113560 5055580..5055984 1 NC_010501.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN0668 transcription regulator heavy metal-dependent MerE family; MerR family transcriptional regulator 5055984 6113560 PputW619_4579 Pseudomonas putida W619 MerR family transcriptional regulator YP_001751428.1 5055580 D 390235 CDS YP_001751429.1 170723741 6113561 5056165..5058111 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0666 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5058111 6113561 PputW619_4580 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751429.1 5056165 D 390235 CDS YP_001751430.1 170723742 6113562 complement(5058171..5058950) 1 NC_010501.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN0665 transcriptional regulator, AraC family; AraC family transcriptional regulator 5058950 6113562 PputW619_4581 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751430.1 5058171 R 390235 CDS YP_001751431.1 170723743 6113563 complement(5059021..5060298) 1 NC_010501.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 5060298 6113563 PputW619_4582 Pseudomonas putida W619 acetyl-CoA acetyltransferase YP_001751431.1 5059021 R 390235 CDS YP_001751432.1 170723744 6113564 5060417..5061769 1 NC_010501.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 5061769 fabG 6113564 fabG Pseudomonas putida W619 3-ketoacyl-ACP reductase YP_001751432.1 5060417 D 390235 CDS YP_001751433.1 170723745 6113565 5061772..5062623 1 NC_010501.1 PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN0662 hypothetical protein; dehydratase 5062623 6113565 PputW619_4584 Pseudomonas putida W619 dehydratase YP_001751433.1 5061772 D 390235 CDS YP_001751434.1 170723746 6113566 5062707..5063012 1 NC_010501.1 KEGG: pen:PSEEN0661 hypothetical protein; hypothetical protein 5063012 6113566 PputW619_4585 Pseudomonas putida W619 hypothetical protein YP_001751434.1 5062707 D 390235 CDS YP_001751435.1 170723747 6113567 5063009..5063758 1 NC_010501.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0660 methyltransferase; type 12 methyltransferase 5063758 6113567 PputW619_4586 Pseudomonas putida W619 type 12 methyltransferase YP_001751435.1 5063009 D 390235 CDS YP_001751436.1 170723748 6113568 5063780..5064415 1 NC_010501.1 KEGG: pen:PSEEN0659 lipoprotein; lipoprotein 5064415 6113568 PputW619_4587 Pseudomonas putida W619 lipoprotein YP_001751436.1 5063780 D 390235 CDS YP_001751437.1 170723749 6113569 5064435..5065004 1 NC_010501.1 KEGG: pen:PSEEN0658 lipoprotein; lipoprotein 5065004 6113569 PputW619_4588 Pseudomonas putida W619 lipoprotein YP_001751437.1 5064435 D 390235 CDS YP_001751438.1 170723750 6113570 5065098..5065568 1 NC_010501.1 PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV 5065568 6113570 PputW619_4589 Pseudomonas putida W619 peptidase A24A prepilin type IV YP_001751438.1 5065098 D 390235 CDS YP_001751439.1 170723751 6113571 5065688..5066464 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN0653 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 5066464 6113571 PputW619_4590 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001751439.1 5065688 D 390235 CDS YP_001751440.1 170723752 6113572 complement(5066527..5068185) 1 NC_010501.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pen:PSEEN0640 hypothetical protein; polypeptide-transport-associated domain-containing protein 5068185 6113572 PputW619_4591 Pseudomonas putida W619 polypeptide-transport-associated domain-containing protein YP_001751440.1 5066527 R 390235 CDS YP_001751441.1 170723753 6113573 complement(5068278..5070632) 1 NC_010501.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 5070632 6113573 PputW619_4592 Pseudomonas putida W619 penicillin-binding protein 1C YP_001751441.1 5068278 R 390235 CDS YP_001751442.1 170723754 6113574 5070710..5071003 1 NC_010501.1 KEGG: pen:PSEEN4843 hypothetical protein; hypothetical protein 5071003 6113574 PputW619_4593 Pseudomonas putida W619 hypothetical protein YP_001751442.1 5070710 D 390235 CDS YP_001751443.1 170723755 6113575 complement(5071167..5076068) 1 NC_010501.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pen:PSEEN4844 hypothetical protein; alpha-2-macroglobulin domain-containing protein 5076068 6113575 PputW619_4594 Pseudomonas putida W619 alpha-2-macroglobulin domain-containing protein YP_001751443.1 5071167 R 390235 CDS YP_001751444.1 170723756 6113576 5076303..5077640 1 NC_010501.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; MATE efflux family protein 5077640 6113576 PputW619_4595 Pseudomonas putida W619 MATE efflux family protein YP_001751444.1 5076303 D 390235 CDS YP_001751445.1 170723757 6113577 5077778..5077939 1 NC_010501.1 KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; hypothetical protein 5077939 6113577 PputW619_4596 Pseudomonas putida W619 hypothetical protein YP_001751445.1 5077778 D 390235 CDS YP_001751446.1 170723758 6113578 complement(5078056..5078511) 1 NC_010501.1 KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein 5078511 6113578 PputW619_4597 Pseudomonas putida W619 hypothetical protein YP_001751446.1 5078056 R 390235 CDS YP_001751447.1 170723759 6113579 complement(5078664..5080577) 1 NC_010501.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 5080577 6113579 PputW619_4598 Pseudomonas putida W619 arginine decarboxylase YP_001751447.1 5078664 R 390235 CDS YP_001751448.1 170723760 6113580 complement(5080727..5081098) 1 NC_010501.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 5081098 6113580 PputW619_4599 Pseudomonas putida W619 translation initiation factor Sui1 YP_001751448.1 5080727 R 390235 CDS YP_001751449.1 170723761 6113581 complement(5081316..5081852) 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4850 IPP isomerase type 1; NUDIX hydrolase 5081852 6113581 PputW619_4600 Pseudomonas putida W619 NUDIX hydrolase YP_001751449.1 5081316 R 390235 CDS YP_001751450.1 170723762 6113582 complement(5081855..5082922) 1 NC_010501.1 KEGG: pen:PSEEN4851 hypothetical protein; hypothetical protein 5082922 6113582 PputW619_4601 Pseudomonas putida W619 hypothetical protein YP_001751450.1 5081855 R 390235 CDS YP_001751451.1 170723763 6113583 5083169..5084548 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN4852 diguanylate cyclase (GGDEF domain)/response regulator; response regulator receiver modulated diguanylate cyclase 5084548 6113583 PputW619_4602 Pseudomonas putida W619 response regulator receiver modulated diguanylate cyclase YP_001751451.1 5083169 D 390235 CDS YP_001751452.1 170723764 6113584 5084662..5086623 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4853 methyl-accepting chemotaxis transducer for inorganic phosphate CtpL; methyl-accepting chemotaxis sensory transducer 5086623 6113584 PputW619_4603 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751452.1 5084662 D 390235 CDS YP_001751453.1 170723765 6113585 5086700..5088481 1 NC_010501.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 5088481 dipZ 6113585 dipZ Pseudomonas putida W619 thiol:disulfide interchange protein YP_001751453.1 5086700 D 390235 CDS YP_001751454.1 170723766 6113586 5088661..5089113 1 NC_010501.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 5089113 6113586 PputW619_4605 Pseudomonas putida W619 3-dehydroquinate dehydratase YP_001751454.1 5088661 D 390235 CDS YP_001751455.1 170723767 6113587 5089215..5089676 1 NC_010501.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 5089676 6113587 PputW619_4606 Pseudomonas putida W619 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001751455.1 5089215 D 390235 CDS YP_001751456.1 170723768 6113588 5089694..5091049 1 NC_010501.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 5091049 6113588 PputW619_4607 Pseudomonas putida W619 acetyl-CoA carboxylase biotin carboxylase subunit YP_001751456.1 5089694 D 390235 CDS YP_001751457.1 170723769 6113589 5091345..5092223 1 NC_010501.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5092223 prmA 6113589 prmA Pseudomonas putida W619 50S ribosomal protein L11 methyltransferase YP_001751457.1 5091345 D 390235 CDS YP_001751458.1 170723770 6113590 5092266..5093594 1 NC_010501.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: pen:PSEEN4860 hypothetical protein; Zinc finger-domain-containing protein 5093594 6113590 PputW619_4609 Pseudomonas putida W619 Zinc finger-domain-containing protein YP_001751458.1 5092266 D 390235 CDS YP_001751459.1 170723771 6113591 5093808..5094821 1 NC_010501.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN4861 dihydrouridine synthase TIM-barrel protein nifR3; NifR3 family TIM-barrel protein 5094821 6113591 PputW619_4610 Pseudomonas putida W619 NifR3 family TIM-barrel protein YP_001751459.1 5093808 D 390235 CDS YP_001751460.1 170723772 6113592 5094818..5095138 1 NC_010501.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5095138 fis 6113592 fis Pseudomonas putida W619 DNA-binding protein Fis YP_001751460.1 5094818 D 390235 CDS YP_001751461.1 170723773 6113593 5095220..5096827 1 NC_010501.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5096827 purH 6113593 purH Pseudomonas putida W619 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001751461.1 5095220 D 390235 CDS YP_001751462.1 170723774 6113594 5096995..5098290 1 NC_010501.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5098290 6113594 PputW619_4613 Pseudomonas putida W619 phosphoribosylamine--glycine ligase YP_001751462.1 5096995 D 390235 CDS YP_001751463.1 170723775 6113595 5098425..5101196 1 NC_010501.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4865 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 5101196 6113595 PputW619_4614 Pseudomonas putida W619 integral membrane sensor hybrid histidine kinase YP_001751463.1 5098425 D 390235 CDS YP_001751464.1 170723776 6113596 5101337..5101933 1 NC_010501.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pen:PSEEN4866 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein 5101933 6113596 PputW619_4615 Pseudomonas putida W619 multiple antibiotic resistance (MarC)-like protein YP_001751464.1 5101337 D 390235 CDS YP_001751465.1 170723777 6113597 complement(5101943..5103634) 1 NC_010501.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pen:PSEEN4868 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase 5103634 6113597 PputW619_4616 Pseudomonas putida W619 precorrin-3B C(17)-methyltransferase YP_001751465.1 5101943 R 390235 CDS YP_001751466.1 170723778 6113598 complement(5103637..5104368) 1 NC_010501.1 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase 5104368 6113598 PputW619_4617 Pseudomonas putida W619 precorrin-2 C(20)-methyltransferase YP_001751466.1 5103637 R 390235 CDS YP_001751467.1 170723779 6113599 complement(5104368..5104994) 1 NC_010501.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 5104994 cobH 6113599 cobH Pseudomonas putida W619 precorrin-8X methylmutase YP_001751467.1 5104368 R 390235 CDS YP_001751468.1 170723780 6113600 complement(5104987..5106318) 1 NC_010501.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN4871 precorrin-3B synthase; precorrin-3B synthase 5106318 6113600 PputW619_4619 Pseudomonas putida W619 precorrin-3B synthase YP_001751468.1 5104987 R 390235 CDS YP_001751469.1 170723781 6113601 5106476..5107705 1 NC_010501.1 KEGG: pen:PSEEN4872 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5107705 6113601 PputW619_4620 Pseudomonas putida W619 precorrin-6y C5,15-methyltransferase subunit CbiE YP_001751469.1 5106476 D 390235 CDS YP_001751470.1 170723782 6113602 5107698..5108792 1 NC_010501.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5108792 cbiD 6113602 cbiD Pseudomonas putida W619 cobalt-precorrin-6A synthase YP_001751470.1 5107698 D 390235 CDS YP_001751471.1 170723783 6113603 5108789..5109508 1 NC_010501.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5109508 6113603 PputW619_4622 Pseudomonas putida W619 cobalt-precorrin-6x reductase YP_001751471.1 5108789 D 390235 CDS YP_001751472.1 170723784 6113604 5109600..5109830 1 NC_010501.1 KEGG: pen:PSEEN4875 virulence-assiciated protein MvpT; virulence-assiciated protein MvpT 5109830 6113604 PputW619_4623 Pseudomonas putida W619 virulence-assiciated protein MvpT YP_001751472.1 5109600 D 390235 CDS YP_001751473.1 170723785 6113605 5109830..5110240 1 NC_010501.1 PFAM: PilT protein domain protein; KEGG: pen:PSEEN4876 nucleic acid binding protein, PIN domain; PilT domain-containing protein 5110240 6113605 PputW619_4624 Pseudomonas putida W619 PilT domain-containing protein YP_001751473.1 5109830 D 390235 CDS YP_001751474.1 170723786 6113606 5110375..5110812 1 NC_010501.1 PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN4877 hypothetical protein; hypothetical protein 5110812 6113606 PputW619_4625 Pseudomonas putida W619 hypothetical protein YP_001751474.1 5110375 D 390235 CDS YP_001751475.1 170723787 6113607 5110837..5111691 1 NC_010501.1 PFAM: band 7 protein; KEGG: pen:PSEEN4878 hypothetical protein; hypothetical protein 5111691 6113607 PputW619_4626 Pseudomonas putida W619 hypothetical protein YP_001751475.1 5110837 D 390235 CDS YP_001751476.1 170723788 6113608 5111885..5112274 1 NC_010501.1 KEGG: pen:PSEEN4879 hypothetical protein; hypothetical protein 5112274 6113608 PputW619_4627 Pseudomonas putida W619 hypothetical protein YP_001751476.1 5111885 D 390235 CDS YP_001751477.1 170723789 6113609 5112323..5112802 1 NC_010501.1 PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN4881 hypothetical protein; hypothetical protein 5112802 6113609 PputW619_4628 Pseudomonas putida W619 hypothetical protein YP_001751477.1 5112323 D 390235 CDS YP_001751478.1 170723790 6113610 5112829..5113260 1 NC_010501.1 KEGG: pen:PSEEN4882 hypothetical protein; hypothetical protein 5113260 6113610 PputW619_4629 Pseudomonas putida W619 hypothetical protein YP_001751478.1 5112829 D 390235 CDS YP_001751479.1 170723791 6113611 5113326..5115392 1 NC_010501.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN4883 outer membrane copper receptor OprC; TonB-dependent copper receptor 5115392 6113611 PputW619_4630 Pseudomonas putida W619 TonB-dependent copper receptor YP_001751479.1 5113326 D 390235 CDS YP_001751480.1 170723792 6113612 5115452..5116816 1 NC_010501.1 PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4884 hypothetical protein; peptidase 5116816 6113612 PputW619_4631 Pseudomonas putida W619 peptidase YP_001751480.1 5115452 D 390235 CDS YP_001751481.1 170723793 6113613 5117019..5118425 1 NC_010501.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5118425 6113613 PputW619_4632 Pseudomonas putida W619 D-alanine/D-serine/glycine permease YP_001751481.1 5117019 D 390235 CDS YP_001751482.1 170723794 6113614 5118614..5119879 1 NC_010501.1 TIGRFAM: urea ABC transporter, urea binding protein; KEGG: pen:PSEEN4888 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea binding protein 5119879 6113614 PputW619_4633 Pseudomonas putida W619 urea ABC transporter urea binding protein YP_001751482.1 5118614 D 390235 CDS YP_001751483.1 170723795 6113615 5120007..5121494 1 NC_010501.1 TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4889 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtB 5121494 6113615 PputW619_4634 Pseudomonas putida W619 urea ABC transporter permease UrtB YP_001751483.1 5120007 D 390235 CDS YP_001751484.1 170723796 6113616 5121494..5122573 1 NC_010501.1 TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4890 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtC 5122573 6113616 PputW619_4635 Pseudomonas putida W619 urea ABC transporter permease UrtC YP_001751484.1 5121494 D 390235 CDS YP_001751485.1 170723797 6113617 5122570..5123427 1 NC_010501.1 TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pen:PSEEN4891 branched-chain amino acid transport ABC transporter, ATP-binding component; urea ABC transporter ATP-binding protein UrtD 5123427 6113617 PputW619_4636 Pseudomonas putida W619 urea ABC transporter ATP-binding protein UrtD YP_001751485.1 5122570 D 390235 CDS YP_001751486.1 170723798 6113618 5123530..5124228 1 NC_010501.1 KEGG: pen:PSEEN4892 branched-chain amino acid ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 5124228 6113618 PputW619_4637 Pseudomonas putida W619 urea ABC transporter ATP-binding protein UrtE YP_001751486.1 5123530 D 390235 CDS YP_001751487.1 170723799 6113619 5124260..5124775 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4893 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5124775 6113619 PputW619_4638 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001751487.1 5124260 D 390235 CDS YP_001751488.1 170723800 6113620 complement(5124840..5125145) 1 NC_010501.1 KEGG: pen:PSEEN4895 hypothetical protein; hypothetical protein 5125145 6113620 PputW619_4639 Pseudomonas putida W619 hypothetical protein YP_001751488.1 5124840 R 390235 CDS YP_001751489.1 170723801 6113621 complement(5125148..5126101) 1 NC_010501.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein; chaperone DnaJ domain-containing protein 5126101 6113621 PputW619_4640 Pseudomonas putida W619 chaperone DnaJ domain-containing protein YP_001751489.1 5125148 R 390235 CDS YP_001751490.1 170723802 6113622 5126266..5127531 1 NC_010501.1 KEGG: pen:PSEEN4897 heat-shock protein, HSP70 family; HSP70 family protein 5127531 6113622 PputW619_4641 Pseudomonas putida W619 HSP70 family protein YP_001751490.1 5126266 D 390235 CDS YP_001751491.1 170723803 6113623 complement(5127630..5128637) 1 NC_010501.1 KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein 5128637 6113623 PputW619_4642 Pseudomonas putida W619 hypothetical protein YP_001751491.1 5127630 R 390235 CDS YP_001751492.1 170723804 6113624 complement(5128709..5128993) 1 NC_010501.1 PFAM: PsiF repeat protein; KEGG: pst:PSPTO_4900 phosphate starvation-inducible protein PsiF; PsiF repeat-containing protein 5128993 6113624 PputW619_4643 Pseudomonas putida W619 PsiF repeat-containing protein YP_001751492.1 5128709 R 390235 CDS YP_001751493.1 170723805 6113625 complement(5129058..5129846) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN4900 transcriptional regulator, AraC family; AraC family transcriptional regulator 5129846 6113625 PputW619_4644 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751493.1 5129058 R 390235 CDS YP_001751494.1 170723806 6113626 5129990..5130883 1 NC_010501.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein; hypothetical protein 5130883 6113626 PputW619_4645 Pseudomonas putida W619 hypothetical protein YP_001751494.1 5129990 D 390235 CDS YP_001751495.1 170723807 6113627 complement(5130864..5131754) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4903 triacylglycerol lipase; alpha/beta hydrolase fold family protein 5131754 6113627 PputW619_4646 Pseudomonas putida W619 alpha/beta hydrolase fold family protein YP_001751495.1 5130864 R 390235 CDS YP_001751496.1 170723808 6113628 5131880..5132221 1 NC_010501.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5132221 6113628 PputW619_4647 Pseudomonas putida W619 DNA-binding transcriptional activator OsmE YP_001751496.1 5131880 D 390235 CDS YP_001751497.1 170723809 6113629 5132270..5132800 1 NC_010501.1 PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: pen:PSEEN4905 bacterioferritin; ferritin Dps family protein 5132800 6113629 PputW619_4648 Pseudomonas putida W619 ferritin Dps family protein YP_001751497.1 5132270 D 390235 CDS YP_001751498.1 170723810 6113630 complement(5132833..5134899) 1 NC_010501.1 PFAM: AsmA family protein; KEGG: pen:PSEEN4906 hypothetical protein; AsmA family protein 5134899 6113630 PputW619_4649 Pseudomonas putida W619 AsmA family protein YP_001751498.1 5132833 R 390235 CDS YP_001751499.1 170723811 6113631 5135195..5135602 1 NC_010501.1 KEGG: pen:PSEEN4907 hypothetical protein; hypothetical protein 5135602 6113631 PputW619_4650 Pseudomonas putida W619 hypothetical protein YP_001751499.1 5135195 D 390235 CDS YP_001751500.1 170723812 6113632 5135778..5137475 1 NC_010501.1 KEGG: plu:plu2336 hypothetical protein; hypothetical protein 5137475 6113632 PputW619_4651 Pseudomonas putida W619 hypothetical protein YP_001751500.1 5135778 D 390235 CDS YP_001751501.1 170723813 6113633 5137543..5138175 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN4908 transcriptional regulator, TetR family; TetR family transcriptional regulator 5138175 6113633 PputW619_4652 Pseudomonas putida W619 TetR family transcriptional regulator YP_001751501.1 5137543 D 390235 CDS YP_001751502.1 170723814 6113634 5138226..5139323 1 NC_010501.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4909 mannose-6-phosphate isomerase; N-acylglucosamine 2-epimerase 5139323 6113634 PputW619_4653 Pseudomonas putida W619 N-acylglucosamine 2-epimerase YP_001751502.1 5138226 D 390235 CDS YP_001751503.1 170723815 6113635 complement(5139423..5140190) 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5140190 6113635 PputW619_4654 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001751503.1 5139423 R 390235 CDS YP_001751504.1 170723816 6113636 complement(5140798..5141514) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4913 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5141514 6113636 PputW619_4655 Pseudomonas putida W619 ABC transporter-like protein YP_001751504.1 5140798 R 390235 CDS YP_001751505.1 170723817 6113637 complement(5141511..5142386) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4914 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5142386 6113637 PputW619_4656 Pseudomonas putida W619 ABC transporter-like protein YP_001751505.1 5141511 R 390235 CDS YP_001751506.1 170723818 6113638 complement(5142383..5143684) 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pen:PSEEN4915 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 5143684 6113638 PputW619_4657 Pseudomonas putida W619 inner-membrane translocator YP_001751506.1 5142383 R 390235 CDS YP_001751507.1 170723819 6113639 complement(5143687..5144601) 1 NC_010501.1 PFAM: inner-membrane translocator; KEGG: pfo:Pfl_0553 inner-membrane translocator; inner-membrane translocator 5144601 6113639 PputW619_4658 Pseudomonas putida W619 inner-membrane translocator YP_001751507.1 5143687 R 390235 CDS YP_001751508.1 170723820 6113640 complement(5144756..5145892) 1 NC_010501.1 PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN4917 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 5145892 6113640 PputW619_4659 Pseudomonas putida W619 extracellular ligand-binding receptor YP_001751508.1 5144756 R 390235 CDS YP_001751509.1 170723821 6113641 5146361..5147566 1 NC_010501.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5147566 6113641 PputW619_4660 Pseudomonas putida W619 nicotinate phosphoribosyltransferase YP_001751509.1 5146361 D 390235 CDS YP_001751510.1 170723822 6113642 5147570..5148397 1 NC_010501.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5148397 nadE 6113642 nadE Pseudomonas putida W619 NAD synthetase YP_001751510.1 5147570 D 390235 CDS YP_001751511.1 170723823 6113643 complement(5148513..5148965) 1 NC_010501.1 TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN4921 azurin; azurin 5148965 6113643 PputW619_4662 Pseudomonas putida W619 azurin YP_001751511.1 5148513 R 390235 CDS YP_001751512.1 170723824 6113644 complement(5149508..5151721) 1 NC_010501.1 PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN4925 Fe-S oxidase, SAM-binding; hypothetical protein 5151721 6113644 PputW619_4663 Pseudomonas putida W619 hypothetical protein YP_001751512.1 5149508 R 390235 CDS YP_001751513.1 170723825 6113645 complement(5151934..5153331) 1 NC_010501.1 unwinds double stranded DNA; replicative DNA helicase 5153331 6113645 PputW619_4664 Pseudomonas putida W619 replicative DNA helicase YP_001751513.1 5151934 R 390235 CDS YP_001751514.1 170723826 6113646 complement(5153445..5153891) 1 NC_010501.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 5153891 rplI 6113646 rplI Pseudomonas putida W619 50S ribosomal protein L9 YP_001751514.1 5153445 R 390235 CDS YP_001751515.1 170723827 6113647 complement(5153912..5154775) 1 NC_010501.1 KEGG: pen:PSEEN4928 hypothetical protein; hypothetical protein 5154775 6113647 PputW619_4666 Pseudomonas putida W619 hypothetical protein YP_001751515.1 5153912 R 390235 CDS YP_001751516.1 170723828 6113648 complement(5154809..5155039) 1 NC_010501.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 5155039 rpsR 6113648 rpsR Pseudomonas putida W619 30S ribosomal protein S18 YP_001751516.1 5154809 R 390235 CDS YP_001751517.1 170723829 6113649 complement(5155068..5155493) 1 NC_010501.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 5155493 rpsF 6113649 rpsF Pseudomonas putida W619 30S ribosomal protein S6 YP_001751517.1 5155068 R 390235 CDS YP_001751518.1 170723830 6113650 complement(5155800..5156546) 1 NC_010501.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pen:PSEEN4932 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 5156546 6113650 PputW619_4669 Pseudomonas putida W619 RNA methyltransferase YP_001751518.1 5155800 R 390235 CDS YP_001751519.1 170723831 6113651 complement(5156543..5159122) 1 NC_010501.1 KEGG: pen:PSEEN4933 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 5159122 6113651 PputW619_4670 Pseudomonas putida W619 ribonuclease R YP_001751519.1 5156543 R 390235 CDS YP_001751520.1 170723832 6113654 5159839..5160852 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4935 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5160852 6113654 PputW619_4671 Pseudomonas putida W619 extracellular solute-binding protein YP_001751520.1 5159839 D 390235 CDS YP_001751521.1 170723833 6113655 5160852..5162417 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4936 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5162417 6113655 PputW619_4672 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751521.1 5160852 D 390235 CDS YP_001751522.1 170723834 6113656 complement(5162523..5163179) 1 NC_010501.1 KEGG: sbn:Sbal195_0134 hypothetical protein; hypothetical protein 5163179 6113656 PputW619_4673 Pseudomonas putida W619 hypothetical protein YP_001751522.1 5162523 R 390235 CDS YP_001751523.1 170723835 6113657 complement(5163671..5163889) 1 NC_010501.1 KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein 5163889 6113657 PputW619_4674 Pseudomonas putida W619 hypothetical protein YP_001751523.1 5163671 R 390235 CDS YP_001751524.1 170723836 6113658 complement(5164058..5164432) 1 NC_010501.1 hypothetical protein 5164432 6113658 PputW619_4675 Pseudomonas putida W619 hypothetical protein YP_001751524.1 5164058 R 390235 CDS YP_001751525.1 170723837 6113661 complement(5166271..5168205) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4937 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5168205 6113661 PputW619_4679 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751525.1 5166271 R 390235 CDS YP_001751526.1 170723838 6113662 complement(5168395..5169687) 1 NC_010501.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 5169687 6113662 PputW619_4680 Pseudomonas putida W619 adenylosuccinate synthetase YP_001751526.1 5168395 R 390235 CDS YP_001751527.1 170723839 6113663 complement(5169744..5170931) 1 NC_010501.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 5170931 hisZ 6113663 hisZ Pseudomonas putida W619 ATP phosphoribosyltransferase regulatory subunit YP_001751527.1 5169744 R 390235 CDS YP_001751528.1 170723840 6113664 complement(5171222..5172091) 1 NC_010501.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pen:PSEEN4940 HflC protein; HflC protein 5172091 6113664 PputW619_4682 Pseudomonas putida W619 HflC protein YP_001751528.1 5171222 R 390235 CDS YP_001751529.1 170723841 6113665 complement(5172091..5173272) 1 NC_010501.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pen:PSEEN4941 HflK protein; HflK protein 5173272 6113665 PputW619_4683 Pseudomonas putida W619 HflK protein YP_001751529.1 5172091 R 390235 CDS YP_001751530.1 170723842 6113666 complement(5173369..5174670) 1 NC_010501.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN4942 hypothetical protein; GTP-binding proten HflX 5174670 6113666 PputW619_4684 Pseudomonas putida W619 GTP-binding proten HflX YP_001751530.1 5173369 R 390235 CDS YP_001751531.1 170723843 6113667 complement(5174683..5174943) 1 NC_010501.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 5174943 hfq 6113667 hfq Pseudomonas putida W619 RNA-binding protein Hfq YP_001751531.1 5174683 R 390235 CDS YP_001751532.1 170723844 6113668 complement(5175038..5176009) 1 NC_010501.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 5176009 miaA 6113668 miaA Pseudomonas putida W619 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001751532.1 5175038 R 390235 CDS YP_001751533.1 170723845 6113669 complement(5176011..5177912) 1 NC_010501.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 5177912 mutL 6113669 mutL Pseudomonas putida W619 DNA mismatch repair protein YP_001751533.1 5176011 R 390235 CDS YP_001751534.1 170723846 6113670 complement(5177909..5179342) 1 NC_010501.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: pen:PSEEN4946 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 5179342 6113670 PputW619_4688 Pseudomonas putida W619 N-acetylmuramoyl-L-alanine amidase YP_001751534.1 5177909 R 390235 CDS YP_001751535.1 170723847 6113671 complement(5179354..5179827) 1 NC_010501.1 PFAM: protein of unknown function UPF0079; KEGG: pen:PSEEN4947 hypothetical protein; hypothetical protein 5179827 6113671 PputW619_4689 Pseudomonas putida W619 hypothetical protein YP_001751535.1 5179354 R 390235 CDS YP_001751536.1 170723848 6113672 complement(5179815..5180675) 1 NC_010501.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: pen:PSEEN4948 hypothetical protein; carbohydrate kinase 5180675 6113672 PputW619_4690 Pseudomonas putida W619 carbohydrate kinase YP_001751536.1 5179815 R 390235 CDS YP_001751537.1 170723849 6113673 5180741..5181805 1 NC_010501.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pfo:Pfl_0517 4Fe-4S cluster binding; iron-sulfur cluster binding protein 5181805 6113673 PputW619_4691 Pseudomonas putida W619 iron-sulfur cluster binding protein YP_001751537.1 5180741 D 390235 CDS YP_001751538.1 170723850 6113674 complement(5181834..5182445) 1 NC_010501.1 PFAM: protein of unknown function UPF0126; KEGG: pen:PSEEN4953 hypothetical protein; hypothetical protein 5182445 6113674 PputW619_4692 Pseudomonas putida W619 hypothetical protein YP_001751538.1 5181834 R 390235 CDS YP_001751539.1 170723851 6113675 complement(5182539..5183081) 1 NC_010501.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 5183081 6113675 PputW619_4693 Pseudomonas putida W619 oligoribonuclease YP_001751539.1 5182539 R 390235 CDS YP_001751540.1 170723852 6113676 5183242..5184273 1 NC_010501.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5184273 6113676 PputW619_4694 Pseudomonas putida W619 ribosome-associated GTPase YP_001751540.1 5183242 D 390235 CDS YP_001751541.1 170723853 6113677 5184388..5184867 1 NC_010501.1 KEGG: pen:PSEEN4956 hypothetical protein; hypothetical protein 5184867 6113677 PputW619_4695 Pseudomonas putida W619 hypothetical protein YP_001751541.1 5184388 D 390235 CDS YP_001751542.1 170723854 6113678 complement(5184897..5185916) 1 NC_010501.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 5185916 motB 6113678 motB Pseudomonas putida W619 flagellar motor protein MotB YP_001751542.1 5184897 R 390235 CDS YP_001751543.1 170723855 6113679 complement(5185920..5186771) 1 NC_010501.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 5186771 6113679 PputW619_4697 Pseudomonas putida W619 flagellar motor protein MotA YP_001751543.1 5185920 R 390235 CDS YP_001751544.1 170723856 6113680 5186902..5188437 1 NC_010501.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4959 hypothetical protein; metal-dependent hydrolase HDOD 5188437 6113680 PputW619_4698 Pseudomonas putida W619 metal-dependent hydrolase HDOD YP_001751544.1 5186902 D 390235 CDS YP_001751545.1 170723857 6113681 5188482..5189291 1 NC_010501.1 PFAM: Rhodanese domain protein; KEGG: pen:PSEEN4960 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 5189291 6113681 PputW619_4699 Pseudomonas putida W619 rhodanese domain-containing protein YP_001751545.1 5188482 D 390235 CDS YP_001751546.1 170723858 6113682 5189301..5190164 1 NC_010501.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5190164 psd 6113682 psd Pseudomonas putida W619 phosphatidylserine decarboxylase YP_001751546.1 5189301 D 390235 CDS YP_001751547.1 170723859 6113683 complement(5190234..5191448) 1 NC_010501.1 KEGG: pen:PSEEN4962 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 5191448 6113683 PputW619_4701 Pseudomonas putida W619 phosphoserine phosphatase SerB YP_001751547.1 5190234 R 390235 CDS YP_001751548.1 170723860 6113684 5191583..5193049 1 NC_010501.1 KEGG: pen:PSEEN4963 hypothetical protein; hypothetical protein 5193049 6113684 PputW619_4702 Pseudomonas putida W619 hypothetical protein YP_001751548.1 5191583 D 390235 CDS YP_001751549.1 170723861 6113685 complement(5193123..5193833) 1 NC_010501.1 PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN4964 hypothetical protein; hypothetical protein 5193833 6113685 PputW619_4703 Pseudomonas putida W619 hypothetical protein YP_001751549.1 5193123 R 390235 CDS YP_001751550.1 170723862 6113686 complement(5194009..5196267) 1 NC_010501.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 5196267 6113686 PputW619_4704 Pseudomonas putida W619 DNA topoisomerase IV subunit A YP_001751550.1 5194009 R 390235 CDS YP_001751551.1 170723863 6113687 complement(5196278..5196796) 1 NC_010501.1 KEGG: pen:PSEEN4967 hypothetical protein; hypothetical protein 5196796 6113687 PputW619_4705 Pseudomonas putida W619 hypothetical protein YP_001751551.1 5196278 R 390235 CDS YP_001751552.1 170723864 6113688 complement(5196793..5197779) 1 NC_010501.1 KEGG: pen:PSEEN4968 hypothetical protein; hypothetical protein 5197779 6113688 PputW619_4706 Pseudomonas putida W619 hypothetical protein YP_001751552.1 5196793 R 390235 CDS YP_001751553.1 170723865 6113689 complement(5197776..5199680) 1 NC_010501.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 5199680 6113689 PputW619_4707 Pseudomonas putida W619 DNA topoisomerase IV subunit B YP_001751553.1 5197776 R 390235 CDS YP_001751554.1 170723866 6113690 complement(5199716..5200324) 1 NC_010501.1 PFAM: protein of unknown function UPF0227; KEGG: pen:PSEEN4970 hypothetical protein; hypothetical protein 5200324 6113690 PputW619_4708 Pseudomonas putida W619 hypothetical protein YP_001751554.1 5199716 R 390235 CDS YP_001751555.1 170723867 6113691 complement(5200457..5201260) 1 NC_010501.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: pen:PSEEN4971 metallo-phosphoesterase; calcineurin phosphoesterase domain-containing protein 5201260 6113691 PputW619_4709 Pseudomonas putida W619 calcineurin phosphoesterase domain-containing protein YP_001751555.1 5200457 R 390235 CDS YP_001751556.1 170723868 6113692 complement(5201345..5201791) 1 NC_010501.1 PFAM: protein of unknown function DUF1249; KEGG: pen:PSEEN4972 hypothetical protein; hypothetical protein 5201791 6113692 PputW619_4710 Pseudomonas putida W619 hypothetical protein YP_001751556.1 5201345 R 390235 CDS YP_001751557.1 170723869 6113693 complement(5201788..5202405) 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4973 hydrolase, MutT/NUDIX family; NUDIX hydrolase 5202405 6113693 PputW619_4711 Pseudomonas putida W619 NUDIX hydrolase YP_001751557.1 5201788 R 390235 CDS YP_001751558.1 170723870 6113694 5202591..5203337 1 NC_010501.1 KEGG: pen:PSEEN4975 lipoprotein; lipoprotein 5203337 6113694 PputW619_4712 Pseudomonas putida W619 lipoprotein YP_001751558.1 5202591 D 390235 CDS YP_001751559.1 170723871 6113695 complement(5203306..5204589) 1 NC_010501.1 TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN4976 transporter, NCS1 nucleoside transporter family; hydroxymethylpyrimidine transporter CytX 5204589 6113695 PputW619_4713 Pseudomonas putida W619 hydroxymethylpyrimidine transporter CytX YP_001751559.1 5203306 R 390235 CDS YP_001751560.1 170723872 6113696 complement(5204683..5206569) 1 NC_010501.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 5206569 6113696 PputW619_4714 Pseudomonas putida W619 thiamine biosynthesis protein ThiC YP_001751560.1 5204683 R 390235 CDS YP_001751561.1 170723873 6113697 5206994..5208427 1 NC_010501.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4979 type I efflux secretion system outer membrane protein, TolC; TolC family type I secretion outer membrane protein 5208427 6113697 PputW619_4715 Pseudomonas putida W619 TolC family type I secretion outer membrane protein YP_001751561.1 5206994 D 390235 CDS YP_001751562.1 170723874 6113699 5209040..5209405 1 NC_010501.1 PFAM: protein of unknown function DUF336; KEGG: spe:Spro_2446 protein of unknown function DUF336; hypothetical protein 5209405 6113699 PputW619_4717 Pseudomonas putida W619 hypothetical protein YP_001751562.1 5209040 D 390235 CDS YP_001751563.1 170723875 6113700 complement(5209476..5210027) 1 NC_010501.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 5210027 6113700 PputW619_4718 Pseudomonas putida W619 single-stranded DNA-binding protein YP_001751563.1 5209476 R 390235 CDS YP_001751564.1 170723876 6113701 complement(5210037..5211431) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0520 transporter, MFS superfamily; major facilitator transporter 5211431 6113701 PputW619_4719 Pseudomonas putida W619 major facilitator transporter YP_001751564.1 5210037 R 390235 CDS YP_001751565.1 170723877 6113702 5211561..5214395 1 NC_010501.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 5214395 uvrA 6113702 uvrA Pseudomonas putida W619 excinuclease ABC subunit A YP_001751565.1 5211561 D 390235 CDS YP_001751566.1 170723878 6113703 complement(5214463..5214927) 1 NC_010501.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN0518 bacterioferritin; bacterioferritin 5214927 6113703 PputW619_4721 Pseudomonas putida W619 bacterioferritin YP_001751566.1 5214463 R 390235 CDS YP_001751567.1 170723879 6113704 complement(5215092..5216531) 1 NC_010501.1 PFAM: Catalase domain protein; KEGG: pen:PSEEN0517 catalase (hydroperoxidase II)KatA; catalase 5216531 6113704 PputW619_4722 Pseudomonas putida W619 catalase YP_001751567.1 5215092 R 390235 CDS YP_001751568.1 170723880 6113705 complement(5216704..5217090) 1 NC_010501.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 5217090 rplQ 6113705 rplQ Pseudomonas putida W619 50S ribosomal protein L17 YP_001751568.1 5216704 R 390235 CDS YP_001751569.1 170723881 6113706 complement(5217133..5218134) 1 NC_010501.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 5218134 6113706 PputW619_4724 Pseudomonas putida W619 DNA-directed RNA polymerase subunit alpha YP_001751569.1 5217133 R 390235 CDS YP_001751570.1 170723882 6113707 complement(5218157..5218777) 1 NC_010501.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 5218777 rpsD 6113707 rpsD Pseudomonas putida W619 30S ribosomal protein S4 YP_001751570.1 5218157 R 390235 CDS YP_001751571.1 170723883 6113708 complement(5218793..5219182) 1 NC_010501.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 5219182 6113708 PputW619_4726 Pseudomonas putida W619 30S ribosomal protein S11 YP_001751571.1 5218793 R 390235 CDS YP_001751572.1 170723884 6113709 complement(5219201..5219557) 1 NC_010501.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 5219557 rpsM 6113709 rpsM Pseudomonas putida W619 30S ribosomal protein S13 YP_001751572.1 5219201 R 390235 CDS YP_001751573.1 170723885 6113710 complement(5219689..5219805) 1 NC_010501.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 5219805 rpmJ 6113710 rpmJ Pseudomonas putida W619 50S ribosomal protein L36 YP_001751573.1 5219689 R 390235 CDS YP_001751574.1 170723886 6113711 complement(5219834..5221165) 1 NC_010501.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 5221165 secY 6113711 secY Pseudomonas putida W619 preprotein translocase subunit SecY YP_001751574.1 5219834 R 390235 CDS YP_001751575.1 170723887 6113712 complement(5221166..5221600) 1 NC_010501.1 late assembly protein; 50S ribosomal protein L15 5221600 rplO 6113712 rplO Pseudomonas putida W619 50S ribosomal protein L15 YP_001751575.1 5221166 R 390235 CDS YP_001751576.1 170723888 6113713 complement(5221604..5221780) 1 NC_010501.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 5221780 rpmD 6113713 rpmD Pseudomonas putida W619 50S ribosomal protein L30 YP_001751576.1 5221604 R 390235 CDS YP_001751577.1 170723889 6113714 complement(5221783..5222283) 1 NC_010501.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 5222283 rpsE 6113714 rpsE Pseudomonas putida W619 30S ribosomal protein S5 YP_001751577.1 5221783 R 390235 CDS YP_001751578.1 170723890 6113715 complement(5222287..5222637) 1 NC_010501.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 5222637 rplR 6113715 rplR Pseudomonas putida W619 50S ribosomal protein L18 YP_001751578.1 5222287 R 390235 CDS YP_001751579.1 170723891 6113716 complement(5222648..5223181) 1 NC_010501.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 5223181 rplF 6113716 rplF Pseudomonas putida W619 50S ribosomal protein L6 YP_001751579.1 5222648 R 390235 CDS YP_001751580.1 170723892 6113717 complement(5223194..5223586) 1 NC_010501.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 5223586 rpsH 6113717 rpsH Pseudomonas putida W619 30S ribosomal protein S8 YP_001751580.1 5223194 R 390235 CDS YP_001751581.1 170723893 6113718 complement(5223795..5224100) 1 NC_010501.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 5224100 rpsN 6113718 rpsN Pseudomonas putida W619 30S ribosomal protein S14 YP_001751581.1 5223795 R 390235 CDS YP_001751582.1 170723894 6113719 complement(5224114..5224653) 1 NC_010501.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 5224653 rplE 6113719 rplE Pseudomonas putida W619 50S ribosomal protein L5 YP_001751582.1 5224114 R 390235 CDS YP_001751583.1 170723895 6113720 complement(5224674..5224988) 1 NC_010501.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 5224988 rplX 6113720 rplX Pseudomonas putida W619 50S ribosomal protein L24 YP_001751583.1 5224674 R 390235 CDS YP_001751584.1 170723896 6113721 complement(5225000..5225368) 1 NC_010501.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 5225368 rplN 6113721 rplN Pseudomonas putida W619 50S ribosomal protein L14 YP_001751584.1 5225000 R 390235 CDS YP_001751585.1 170723897 6113722 complement(5225392..5225658) 1 NC_010501.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 5225658 rpsQ 6113722 rpsQ Pseudomonas putida W619 30S ribosomal protein S17 YP_001751585.1 5225392 R 390235 CDS YP_001751586.1 170723898 6113723 complement(5225661..5225855) 1 NC_010501.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 5225855 6113723 PputW619_4741 Pseudomonas putida W619 50S ribosomal protein L29 YP_001751586.1 5225661 R 390235 CDS YP_001751587.1 170723899 6113724 complement(5225852..5226265) 1 NC_010501.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 5226265 rplP 6113724 rplP Pseudomonas putida W619 50S ribosomal protein L16 YP_001751587.1 5225852 R 390235 CDS YP_001751588.1 170723900 6113725 complement(5226278..5226964) 1 NC_010501.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 5226964 rpsC 6113725 rpsC Pseudomonas putida W619 30S ribosomal protein S3 YP_001751588.1 5226278 R 390235 CDS YP_001751589.1 170723901 6113726 complement(5226978..5227310) 1 NC_010501.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 5227310 rplV 6113726 rplV Pseudomonas putida W619 50S ribosomal protein L22 YP_001751589.1 5226978 R 390235 CDS YP_001751590.1 170723902 6113727 complement(5227322..5227597) 1 NC_010501.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 5227597 rpsS 6113727 rpsS Pseudomonas putida W619 30S ribosomal protein S19 YP_001751590.1 5227322 R 390235 CDS YP_001751591.1 170723903 6113728 complement(5227614..5228438) 1 NC_010501.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 5228438 rplB 6113728 rplB Pseudomonas putida W619 50S ribosomal protein L2 YP_001751591.1 5227614 R 390235 CDS YP_001751592.1 170723904 6113729 complement(5228453..5228752) 1 NC_010501.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 5228752 rplW 6113729 rplW Pseudomonas putida W619 50S ribosomal protein L23 YP_001751592.1 5228453 R 390235 CDS YP_001751593.1 170723905 6113730 complement(5228749..5229351) 1 NC_010501.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 5229351 rplD 6113730 rplD Pseudomonas putida W619 50S ribosomal protein L4 YP_001751593.1 5228749 R 390235 CDS YP_001751594.1 170723906 6113731 complement(5229364..5229999) 1 NC_010501.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 5229999 rplC 6113731 rplC Pseudomonas putida W619 50S ribosomal protein L3 YP_001751594.1 5229364 R 390235 CDS YP_001751595.1 170723907 6113732 complement(5230080..5230391) 1 NC_010501.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 5230391 rpsJ 6113732 rpsJ Pseudomonas putida W619 30S ribosomal protein S10 YP_001751595.1 5230080 R 390235 CDS YP_001751596.1 170723908 6113733 complement(5230534..5231727) 1 NC_010501.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 5231727 6113733 PputW619_4751 Pseudomonas putida W619 elongation factor Tu YP_001751596.1 5230534 R 390235 CDS YP_001751597.1 170723909 6113734 complement(5231755..5233899) 1 NC_010501.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 5233899 6113734 PputW619_4752 Pseudomonas putida W619 elongation factor G YP_001751597.1 5231755 R 390235 CDS YP_001751598.1 170723910 6113735 complement(5233930..5234400) 1 NC_010501.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 5234400 6113735 PputW619_4753 Pseudomonas putida W619 30S ribosomal protein S7 YP_001751598.1 5233930 R 390235 CDS YP_001751599.1 170723911 6113736 complement(5234507..5234878) 1 NC_010501.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 5234878 rpsL 6113736 rpsL Pseudomonas putida W619 30S ribosomal protein S12 YP_001751599.1 5234507 R 390235 CDS YP_001751600.1 170723912 6113737 complement(5235090..5239289) 1 NC_010501.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 5239289 6113737 PputW619_4755 Pseudomonas putida W619 DNA-directed RNA polymerase subunit beta' YP_001751600.1 5235090 R 390235 CDS YP_001751601.1 170723913 6113738 complement(5239354..5243427) 1 NC_010501.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 5243427 rpoB 6113738 rpoB Pseudomonas putida W619 DNA-directed RNA polymerase subunit beta YP_001751601.1 5239354 R 390235 CDS YP_001751602.1 170723914 6113739 complement(5243647..5244012) 1 NC_010501.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 5244012 rplL 6113739 rplL Pseudomonas putida W619 50S ribosomal protein L7/L12 YP_001751602.1 5243647 R 390235 CDS YP_001751603.1 170723915 6113740 complement(5244091..5244591) 1 NC_010501.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 5244591 rplJ 6113740 rplJ Pseudomonas putida W619 50S ribosomal protein L10 YP_001751603.1 5244091 R 390235 CDS YP_001751604.1 170723916 6113741 complement(5244788..5245483) 1 NC_010501.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 5245483 rplA 6113741 rplA Pseudomonas putida W619 50S ribosomal protein L1 YP_001751604.1 5244788 R 390235 CDS YP_001751605.1 170723917 6113742 complement(5245483..5245914) 1 NC_010501.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 5245914 rplK 6113742 rplK Pseudomonas putida W619 50S ribosomal protein L11 YP_001751605.1 5245483 R 390235 CDS YP_001751606.1 170723918 6113743 complement(5246034..5246567) 1 NC_010501.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 5246567 nusG 6113743 nusG Pseudomonas putida W619 transcription antitermination protein NusG YP_001751606.1 5246034 R 390235 CDS YP_001751607.1 170723919 6113744 complement(5246577..5246945) 1 NC_010501.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 5246945 secE 6113744 secE Pseudomonas putida W619 preprotein translocase subunit SecE YP_001751607.1 5246577 R 390235 CDS YP_001751608.1 170723920 6113746 complement(5247120..5248313) 1 NC_010501.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 5248313 6113746 PputW619_4763 Pseudomonas putida W619 elongation factor Tu YP_001751608.1 5247120 R 390235 CDS YP_001751609.1 170723921 6113750 complement(5248831..5249256) 1 NC_010501.1 KEGG: pen:PSEEN0473 hypothetical protein; hypothetical protein 5249256 6113750 PputW619_4764 Pseudomonas putida W619 hypothetical protein YP_001751609.1 5248831 R 390235 CDS YP_001751610.1 170723922 6113751 complement(5249264..5250013) 1 NC_010501.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 5250013 6113751 PputW619_4765 Pseudomonas putida W619 pantothenate kinase YP_001751610.1 5249264 R 390235 CDS YP_001751611.1 170723923 6113752 complement(5250003..5250968) 1 NC_010501.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 5250968 6113752 PputW619_4766 Pseudomonas putida W619 biotin--protein ligase YP_001751611.1 5250003 R 390235 CDS YP_001751612.1 170723924 6113756 complement(5256690..5257889) 1 NC_010501.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 5257889 6113756 PputW619_4767 Pseudomonas putida W619 tyrosyl-tRNA synthetase YP_001751612.1 5256690 R 390235 CDS YP_001751613.1 170723925 6113757 5258107..5259525 1 NC_010501.1 PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: pen:PSEEN0463 peptidase, M23/M37 family; peptidase M23B 5259525 6113757 PputW619_4768 Pseudomonas putida W619 peptidase M23B YP_001751613.1 5258107 D 390235 CDS YP_001751614.1 170723926 6113758 5259550..5260620 1 NC_010501.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 5260620 anmK 6113758 anmK Pseudomonas putida W619 anhydro-N-acetylmuramic acid kinase YP_001751614.1 5259550 D 390235 CDS YP_001751615.1 170723927 6113759 complement(5260679..5261077) 1 NC_010501.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 5261077 6113759 PputW619_4770 Pseudomonas putida W619 iron-sulfur cluster insertion protein ErpA YP_001751615.1 5260679 R 390235 CDS YP_001751616.1 170723928 6113760 complement(5261176..5262210) 1 NC_010501.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 5262210 argC 6113760 argC Pseudomonas putida W619 N-acetyl-gamma-glutamyl-phosphate reductase YP_001751616.1 5261176 R 390235 CDS YP_001751617.1 170723929 6113761 5262353..5262778 1 NC_010501.1 PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_5103 hypothetical protein; hypothetical protein 5262778 6113761 PputW619_4772 Pseudomonas putida W619 hypothetical protein YP_001751617.1 5262353 D 390235 CDS YP_001751618.1 170723930 6113762 5262809..5263765 1 NC_010501.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN0458 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 5263765 6113762 PputW619_4773 Pseudomonas putida W619 2-nitropropane dioxygenase YP_001751618.1 5262809 D 390235 CDS YP_001751619.1 170723931 6113763 5263833..5264615 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN0457 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5264615 6113763 PputW619_4774 Pseudomonas putida W619 short-chain dehydrogenase/reductase SDR YP_001751619.1 5263833 D 390235 CDS YP_001751620.1 170723932 6113764 5264681..5265019 1 NC_010501.1 PFAM: histidine triad (HIT) protein; KEGG: psb:Psyr_4573 histidine triad (HIT) protein; histidine triad (HIT) protein 5265019 6113764 PputW619_4775 Pseudomonas putida W619 histidine triad (HIT) protein YP_001751620.1 5264681 D 390235 CDS YP_001751621.1 170723933 6113765 5265086..5265733 1 NC_010501.1 KEGG: pen:PSEEN0455 ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 5265733 6113765 PputW619_4776 Pseudomonas putida W619 ubiquinone biosynthesis protein COQ7 YP_001751621.1 5265086 D 390235 CDS YP_001751622.1 170723934 6113766 5265744..5266784 1 NC_010501.1 KEGG: pen:PSEEN0454 hypothetical protein; hypothetical protein 5266784 6113766 PputW619_4777 Pseudomonas putida W619 hypothetical protein YP_001751622.1 5265744 D 390235 CDS YP_001751623.1 170723935 6113767 complement(5266819..5267241) 1 NC_010501.1 PFAM: OsmC family protein; KEGG: pen:PSEEN0452 hypothetical protein; OsmC family protein 5267241 6113767 PputW619_4778 Pseudomonas putida W619 OsmC family protein YP_001751623.1 5266819 R 390235 CDS YP_001751624.1 170723936 6113768 5267433..5268077 1 NC_010501.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 5268077 6113768 PputW619_4779 Pseudomonas putida W619 cAMP-regulatory protein YP_001751624.1 5267433 D 390235 CDS YP_001751625.1 170723937 6113769 complement(5268074..5268778) 1 NC_010501.1 KEGG: pen:PSEEN0450 hypothetical protein; hypothetical protein 5268778 6113769 PputW619_4780 Pseudomonas putida W619 hypothetical protein YP_001751625.1 5268074 R 390235 CDS YP_001751626.1 170723938 6113770 complement(5268824..5269657) 1 NC_010501.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 5269657 trpC 6113770 trpC Pseudomonas putida W619 indole-3-glycerol-phosphate synthase YP_001751626.1 5268824 R 390235 CDS YP_001751627.1 170723939 6113771 complement(5269654..5270703) 1 NC_010501.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 5270703 trpD 6113771 trpD Pseudomonas putida W619 anthranilate phosphoribosyltransferase YP_001751627.1 5269654 R 390235 CDS YP_001751628.1 170723940 6113772 complement(5270713..5271306) 1 NC_010501.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 5271306 6113772 PputW619_4783 Pseudomonas putida W619 anthranilate synthase component II YP_001751628.1 5270713 R 390235 CDS YP_001751629.1 170723941 6113773 5271680..5273569 1 NC_010501.1 KEGG: pen:PSEEN0445 esterase EstA precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 5273569 6113773 PputW619_4784 Pseudomonas putida W619 outer membrane autotransporter YP_001751629.1 5271680 D 390235 CDS YP_001751630.1 170723942 6113774 complement(5273606..5275087) 1 NC_010501.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 5275087 6113774 PputW619_4785 Pseudomonas putida W619 anthranilate synthase component I YP_001751630.1 5273606 R 390235 CDS YP_001751631.1 170723943 6113775 complement(5275155..5275973) 1 NC_010501.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 5275973 6113775 PputW619_4786 Pseudomonas putida W619 phosphoglycolate phosphatase YP_001751631.1 5275155 R 390235 CDS YP_001751632.1 170723944 6113776 complement(5275970..5276644) 1 NC_010501.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 5276644 6113776 PputW619_4787 Pseudomonas putida W619 ribulose-phosphate 3-epimerase YP_001751632.1 5275970 R 390235 CDS YP_001751633.1 170723945 6113777 complement(5276805..5277632) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0441 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5277632 6113777 PputW619_4788 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751633.1 5276805 R 390235 CDS YP_001751634.1 170723946 6113778 complement(5277644..5278891) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0440 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5278891 6113778 PputW619_4789 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751634.1 5277644 R 390235 CDS YP_001751635.1 170723947 6113779 complement(5278959..5279993) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0439 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 5279993 6113779 PputW619_4790 Pseudomonas putida W619 extracellular solute-binding protein YP_001751635.1 5278959 R 390235 CDS YP_001751636.1 170723948 6113780 complement(5280034..5281158) 1 NC_010501.1 KEGG: pen:PSEEN0438 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 5281158 6113780 PputW619_4791 Pseudomonas putida W619 spermidine/putrescine ABC transporter ATPase YP_001751636.1 5280034 R 390235 CDS YP_001751637.1 170723949 6113781 complement(5281370..5281999) 1 NC_010501.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN0437 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 5281999 6113781 PputW619_4792 Pseudomonas putida W619 two component LuxR family transcriptional regulator YP_001751637.1 5281370 R 390235 CDS YP_001751638.1 170723950 6113782 complement(5282010..5284397) 1 NC_010501.1 KEGG: pen:PSEEN0436 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; cyclic nucleotide-binding protein 5284397 6113782 PputW619_4793 Pseudomonas putida W619 cyclic nucleotide-binding protein YP_001751638.1 5282010 R 390235 CDS YP_001751639.1 170723951 6113783 5284493..5285488 1 NC_010501.1 KEGG: pen:PSEEN0435 hypothetical protein; hypothetical protein 5285488 6113783 PputW619_4794 Pseudomonas putida W619 hypothetical protein YP_001751639.1 5284493 D 390235 CDS YP_001751640.1 170723952 6113784 complement(5285566..5286330) 1 NC_010501.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pen:PSEEN0434 DnaJ-like co-chaperone; heat shock protein DnaJ domain-containing protein 5286330 6113784 PputW619_4795 Pseudomonas putida W619 heat shock protein DnaJ domain-containing protein YP_001751640.1 5285566 R 390235 CDS YP_001751641.1 170723953 6113785 complement(5286332..5287003) 1 NC_010501.1 PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN0433 nucleotidyltransferase; nucleotidyl transferase 5287003 6113785 PputW619_4796 Pseudomonas putida W619 nucleotidyl transferase YP_001751641.1 5286332 R 390235 CDS YP_001751642.1 170723954 6113786 complement(5287000..5288019) 1 NC_010501.1 PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN0432 phosphotransferase; aminoglycoside phosphotransferase 5288019 6113786 PputW619_4797 Pseudomonas putida W619 aminoglycoside phosphotransferase YP_001751642.1 5287000 R 390235 CDS YP_001751643.1 170723955 6113787 5288150..5290954 1 NC_010501.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: pen:PSEEN0431 organic solvent tolerance protein precursor OstA; organic solvent tolerance protein 5290954 6113787 PputW619_4798 Pseudomonas putida W619 organic solvent tolerance protein YP_001751643.1 5288150 D 390235 CDS YP_001751644.1 170723956 6113788 5290929..5292254 1 NC_010501.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN0430 peptidyl-prolyl cis-trans isomerase A; SurA domain-containing protein 5292254 6113788 PputW619_4799 Pseudomonas putida W619 SurA domain-containing protein YP_001751644.1 5290929 D 390235 CDS YP_001751645.1 170723957 6113789 5292251..5293240 1 NC_010501.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 5293240 pdxA 6113789 pdxA Pseudomonas putida W619 4-hydroxythreonine-4-phosphate dehydrogenase YP_001751645.1 5292251 D 390235 CDS YP_001751646.1 170723958 6113790 5293237..5294037 1 NC_010501.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 5294037 ksgA 6113790 ksgA Pseudomonas putida W619 dimethyladenosine transferase YP_001751646.1 5293237 D 390235 CDS YP_001751647.1 170723959 6113791 5294195..5294575 1 NC_010501.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 5294575 apaG 6113791 apaG Pseudomonas putida W619 ApaG protein YP_001751647.1 5294195 D 390235 CDS YP_001751648.1 170723960 6113792 5294575..5295441 1 NC_010501.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 5295441 apaH 6113792 apaH Pseudomonas putida W619 diadenosine tetraphosphatase YP_001751648.1 5294575 D 390235 CDS YP_001751649.1 170723961 6113793 5295457..5295786 1 NC_010501.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 5295786 glpE 6113793 glpE Pseudomonas putida W619 thiosulfate sulfurtransferase YP_001751649.1 5295457 D 390235 CDS YP_001751650.1 170723962 6113794 5296068..5297990 1 NC_010501.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pen:PSEEN0424 serine protein kinase; putative serine protein kinase PrkA 5297990 6113794 PputW619_4805 Pseudomonas putida W619 putative serine protein kinase PrkA YP_001751650.1 5296068 D 390235 CDS YP_001751651.1 170723963 6113795 5298167..5299438 1 NC_010501.1 PFAM: protein of unknown function DUF444; KEGG: pen:PSEEN0423 hypothetical protein; hypothetical protein 5299438 6113795 PputW619_4806 Pseudomonas putida W619 hypothetical protein YP_001751651.1 5298167 D 390235 CDS YP_001751652.1 170723964 6113796 5299435..5301003 1 NC_010501.1 PFAM: SpoVR family protein; KEGG: pen:PSEEN0422 hypothetical protein; SpoVR family protein 5301003 6113796 PputW619_4807 Pseudomonas putida W619 SpoVR family protein YP_001751652.1 5299435 D 390235 CDS YP_001751653.1 170723965 6113797 5301062..5302174 1 NC_010501.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 5302174 cca 6113797 cca Pseudomonas putida W619 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_001751653.1 5301062 D 390235 CDS YP_001751654.1 170723966 6113798 complement(5302234..5302743) 1 NC_010501.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: pen:PSEEN0420 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 5302743 6113798 PputW619_4809 Pseudomonas putida W619 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001751654.1 5302234 R 390235 CDS YP_001751655.1 170723967 6113799 complement(5302734..5303090) 1 NC_010501.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pen:PSEEN0419 dihydroneopterin aldolase; dihydroneopterin aldolase 5303090 6113799 PputW619_4810 Pseudomonas putida W619 dihydroneopterin aldolase YP_001751655.1 5302734 R 390235 CDS YP_001751656.1 170723968 6113800 5303165..5303734 1 NC_010501.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 5303734 6113800 PputW619_4811 Pseudomonas putida W619 putative glycerol-3-phosphate acyltransferase PlsY YP_001751656.1 5303165 D 390235 CDS YP_001751657.1 170723969 6113801 complement(5303751..5304776) 1 NC_010501.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 5304776 6113801 PputW619_4812 Pseudomonas putida W619 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001751657.1 5303751 R 390235 CDS YP_001751658.1 170723970 6113802 5304981..5305196 1 NC_010501.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 5305196 rpsU 6113802 rpsU Pseudomonas putida W619 30S ribosomal protein S21 YP_001751658.1 5304981 D 390235 CDS YP_001751659.1 170723971 6113803 5305497..5307479 1 NC_010501.1 synthesizes RNA primers at the replication forks; DNA primase 5307479 dnaG 6113803 dnaG Pseudomonas putida W619 DNA primase YP_001751659.1 5305497 D 390235 CDS YP_001751660.1 170723972 6113804 5307547..5309397 1 NC_010501.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 5309397 6113804 PputW619_4815 Pseudomonas putida W619 RNA polymerase sigma factor RpoD YP_001751660.1 5307547 D 390235 CDS YP_001751661.1 170723973 6113805 5309519..5313262 1 NC_010501.1 KEGG: pen:PSEEN0412 sensory box proten ; GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5313262 6113805 PputW619_4816 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001751661.1 5309519 D 390235 CDS YP_001751662.1 170723974 6113807 5313620..5314759 1 NC_010501.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pau:PA14_07450 hypothetical protein; filamentation induced by cAMP protein fic 5314759 6113807 PputW619_4817 Pseudomonas putida W619 filamentation induced by cAMP protein fic YP_001751662.1 5313620 D 390235 CDS YP_001751663.1 170723975 6113808 complement(5314898..5315422) 1 NC_010501.1 KEGG: plu:plu2021 hypothetical protein; hypothetical protein 5315422 6113808 PputW619_4818 Pseudomonas putida W619 hypothetical protein YP_001751663.1 5314898 R 390235 CDS YP_001751664.1 170723976 6113809 5315562..5316023 1 NC_010501.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN0407 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5316023 6113809 PputW619_4819 Pseudomonas putida W619 AsnC family transcriptional regulator YP_001751664.1 5315562 D 390235 CDS YP_001751665.1 170723977 6113810 5316214..5317896 1 NC_010501.1 PFAM: amine oxidase; KEGG: pen:PSEEN0401 amino oxydase; amine oxidase 5317896 6113810 PputW619_4820 Pseudomonas putida W619 amine oxidase YP_001751665.1 5316214 D 390235 CDS YP_001751666.1 170723978 6113811 5317911..5318705 1 NC_010501.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5318705 6113811 PputW619_4821 Pseudomonas putida W619 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001751666.1 5317911 D 390235 CDS YP_001751667.1 170723979 6113812 5318771..5321053 1 NC_010501.1 TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0399 coenzyme PQQ synthesis protein F; coenzyme PQQ biosynthesis protein PqqF 5321053 6113812 PputW619_4822 Pseudomonas putida W619 coenzyme PQQ biosynthesis protein PqqF YP_001751667.1 5318771 D 390235 CDS YP_001751668.1 170723980 6113813 5321223..5321294 1 NC_010501.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA 5321294 pqqA 6113813 pqqA Pseudomonas putida W619 coenzyme PQQ synthesis protein PqqA YP_001751668.1 5321223 D 390235 CDS YP_001751669.1 170723981 6113814 5321384..5322295 1 NC_010501.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 5322295 6113814 PputW619_4824 Pseudomonas putida W619 pyrroloquinoline quinone biosynthesis protein PqqB YP_001751669.1 5321384 D 390235 CDS YP_001751670.1 170723982 6113815 5322305..5323060 1 NC_010501.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 5323060 6113815 PputW619_4825 Pseudomonas putida W619 pyrroloquinoline quinone biosynthesis protein PqqC YP_001751670.1 5322305 D 390235 CDS YP_001751671.1 170723983 6113816 5323057..5323332 1 NC_010501.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 5323332 6113816 PputW619_4826 Pseudomonas putida W619 pyrroloquinoline quinone biosynthesis protein PqqD YP_001751671.1 5323057 D 390235 CDS YP_001751672.1 170723984 6113817 5323304..5324452 1 NC_010501.1 KEGG: pen:PSEEN0394 coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III); TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 5324452 6113817 PputW619_4827 Pseudomonas putida W619 pyrroloquinoline quinone biosynthesis protein PqqE YP_001751672.1 5323304 D 390235 CDS YP_001751673.1 170723985 6113818 5324418..5326241 1 NC_010501.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: pen:PSEEN0393 prolyl oligopeptidase; peptidase S9 prolyl oligopeptidase 5326241 6113818 PputW619_4828 Pseudomonas putida W619 peptidase S9 prolyl oligopeptidase YP_001751673.1 5324418 D 390235 CDS YP_001751674.1 170723986 6113819 complement(5326273..5326431) 1 NC_010501.1 PFAM: protein of unknown function UPF0057; KEGG: pen:PSEEN5109 hypothetical protein; hypothetical protein 5326431 6113819 PputW619_4829 Pseudomonas putida W619 hypothetical protein YP_001751674.1 5326273 R 390235 CDS YP_001751675.1 170723987 6113820 complement(5326628..5327908) 1 NC_010501.1 PFAM: aminotransferase class-III; KEGG: pen:PSEEN5110 acetylornithine aminotransferase; class III aminotransferase 5327908 6113820 PputW619_4830 Pseudomonas putida W619 class III aminotransferase YP_001751675.1 5326628 R 390235 CDS YP_001751676.1 170723988 6113821 5328117..5329040 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5111 transcriptional regulator, LysR family; LysR family transcriptional regulator 5329040 6113821 PputW619_4831 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751676.1 5328117 D 390235 CDS YP_001751677.1 170723989 6113822 complement(5329302..5331080) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN5113 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5331080 6113822 PputW619_4832 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001751677.1 5329302 R 390235 CDS YP_001751678.1 170723990 6113823 complement(5331204..5332487) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN5114 diguanylate cyclase (GGDEF domain); diguanylate cyclase 5332487 6113823 PputW619_4833 Pseudomonas putida W619 diguanylate cyclase YP_001751678.1 5331204 R 390235 CDS YP_001751679.1 170723991 6113824 complement(5332699..5334504) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5115 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5334504 6113824 PputW619_4834 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001751679.1 5332699 R 390235 CDS YP_001751680.1 170723992 6113825 complement(5334811..5335107) 1 NC_010501.1 KEGG: pen:PSEEN5116 hypothetical protein; hypothetical protein 5335107 6113825 PputW619_4835 Pseudomonas putida W619 hypothetical protein YP_001751680.1 5334811 R 390235 CDS YP_001751681.1 170723993 6113826 complement(5335226..5335906) 1 NC_010501.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 5335906 bioD 6113826 bioD Pseudomonas putida W619 dithiobiotin synthetase YP_001751681.1 5335226 R 390235 CDS YP_001751682.1 170723994 6113827 complement(5335917..5336735) 1 NC_010501.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5118 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 5336735 6113827 PputW619_4837 Pseudomonas putida W619 biotin biosynthesis protein BioC YP_001751682.1 5335917 R 390235 CDS YP_001751683.1 170723995 6113828 complement(5336728..5337459) 1 NC_010501.1 PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5119 biotin biosynthesis BioH; carboxylesterase 5337459 6113828 PputW619_4838 Pseudomonas putida W619 carboxylesterase YP_001751683.1 5336728 R 390235 CDS YP_001751684.1 170723996 6113829 complement(5337452..5338624) 1 NC_010501.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 5338624 6113829 PputW619_4839 Pseudomonas putida W619 8-amino-7-oxononanoate synthase YP_001751684.1 5337452 R 390235 CDS YP_001751685.1 170723997 6113830 complement(5338626..5339684) 1 NC_010501.1 KEGG: pen:PSEEN5121 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 5339684 6113830 PputW619_4840 Pseudomonas putida W619 biotin synthase YP_001751685.1 5338626 R 390235 CDS YP_001751686.1 170723998 6113831 5339774..5340511 1 NC_010501.1 KEGG: pen:PSEEN5122 competence protein ComF; competence protein ComF 5340511 6113831 PputW619_4841 Pseudomonas putida W619 competence protein ComF YP_001751686.1 5339774 D 390235 CDS YP_001751687.1 170723999 6113832 5340538..5341302 1 NC_010501.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: pen:PSEEN5123 molybdate transport regulator ModE; ModE family transcriptional regulator 5341302 6113832 PputW619_4842 Pseudomonas putida W619 ModE family transcriptional regulator YP_001751687.1 5340538 D 390235 CDS YP_001751688.1 170724000 6113833 5341374..5342348 1 NC_010501.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 5342348 6113833 PputW619_4843 Pseudomonas putida W619 serine/threonine protein kinase YP_001751688.1 5341374 D 390235 CDS YP_001751689.1 170724001 6113834 5342413..5343300 1 NC_010501.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5125 RarD protein; transporter DMT superfamily protein 5343300 6113834 PputW619_4844 Pseudomonas putida W619 transporter DMT superfamily protein YP_001751689.1 5342413 D 390235 CDS YP_001751690.1 170724002 6113835 complement(5343529..5344047) 1 NC_010501.1 PFAM: amino acid-binding ACT domain protein; KEGG: pen:PSEEN5126 hypothetical protein; amino acid-binding ACT domain-containing protein 5344047 6113835 PputW619_4845 Pseudomonas putida W619 amino acid-binding ACT domain-containing protein YP_001751690.1 5343529 R 390235 CDS YP_001751691.1 170724003 6113836 5344503..5346680 1 NC_010501.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 5346680 6113836 PputW619_4846 Pseudomonas putida W619 malate synthase G YP_001751691.1 5344503 D 390235 CDS YP_001751692.1 170724004 6113837 complement(5346777..5347220) 1 NC_010501.1 PFAM: response regulator receiver; KEGG: pen:PSEEN5128 response regulator; response regulator receiver protein 5347220 6113837 PputW619_4847 Pseudomonas putida W619 response regulator receiver protein YP_001751692.1 5346777 R 390235 CDS YP_001751693.1 170724005 6113838 5347406..5349343 1 NC_010501.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pen:PSEEN5129 nucleotidyltransferase, CBS domain/cAMP binding; hypothetical protein 5349343 6113838 PputW619_4848 Pseudomonas putida W619 hypothetical protein YP_001751693.1 5347406 D 390235 CDS YP_001751694.1 170724006 6113839 5349340..5350050 1 NC_010501.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN5130 exonuclease; exonuclease RNase T and DNA polymerase III 5350050 6113839 PputW619_4849 Pseudomonas putida W619 exonuclease RNase T and DNA polymerase III YP_001751694.1 5349340 D 390235 CDS YP_001751695.1 170724007 6113840 5350214..5350732 1 NC_010501.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 5350732 6113840 PputW619_4850 Pseudomonas putida W619 RNA polymerase sigma factor YP_001751695.1 5350214 D 390235 CDS YP_001751696.1 170724008 6113841 5350729..5351685 1 NC_010501.1 PFAM: FecR protein; KEGG: pen:PSEEN5132 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5351685 6113841 PputW619_4851 Pseudomonas putida W619 anti-FecI sigma factor FecR YP_001751696.1 5350729 D 390235 CDS YP_001751697.1 170724009 6113842 5351846..5354278 1 NC_010501.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN5134 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5354278 6113842 PputW619_4852 Pseudomonas putida W619 TonB-dependent siderophore receptor YP_001751697.1 5351846 D 390235 CDS YP_001751698.1 170724010 6113843 5354306..5355439 1 NC_010501.1 PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN5135 hypothetical protein; PepSY-associated TM helix domain-containing protein 5355439 6113843 PputW619_4853 Pseudomonas putida W619 PepSY-associated TM helix domain-containing protein YP_001751698.1 5354306 D 390235 CDS YP_001751699.1 170724011 6113844 5355436..5355612 1 NC_010501.1 KEGG: pen:PSEEN5136 hypothetical protein; hypothetical protein 5355612 6113844 PputW619_4854 Pseudomonas putida W619 hypothetical protein YP_001751699.1 5355436 D 390235 CDS YP_001751700.1 170724012 6113845 5355679..5358483 1 NC_010501.1 KEGG: psb:Psyr_0413 hypothetical protein; hypothetical protein 5358483 6113845 PputW619_4855 Pseudomonas putida W619 hypothetical protein YP_001751700.1 5355679 D 390235 CDS YP_001751701.1 170724013 6113846 complement(5358444..5359886) 1 NC_010501.1 KEGG: pen:PSEEN5137 hypothetical protein; hypothetical protein 5359886 6113846 PputW619_4856 Pseudomonas putida W619 hypothetical protein YP_001751701.1 5358444 R 390235 CDS YP_001751702.1 170724014 6113847 complement(5359886..5360638) 1 NC_010501.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5138 heptose kinase WapQ; lipopolysaccharide kinase 5360638 6113847 PputW619_4857 Pseudomonas putida W619 lipopolysaccharide kinase YP_001751702.1 5359886 R 390235 CDS YP_001751703.1 170724015 6113848 complement(5360635..5361369) 1 NC_010501.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5139 heptose kinase WapP; lipopolysaccharide kinase 5361369 6113848 PputW619_4858 Pseudomonas putida W619 lipopolysaccharide kinase YP_001751703.1 5360635 R 390235 CDS YP_001751704.1 170724016 6113849 complement(5361369..5362175) 1 NC_010501.1 PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5140 lipopolysaccharide core biosynthesis; kinase for core heptose of lipopolysaccharide; lipopolysaccharide kinase 5362175 6113849 PputW619_4859 Pseudomonas putida W619 lipopolysaccharide kinase YP_001751704.1 5361369 R 390235 CDS YP_001751705.1 170724017 6113850 complement(5362172..5363296) 1 NC_010501.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN5141 glucosyltransferase I; glycosyl transferase group 1 protein 5363296 6113850 PputW619_4860 Pseudomonas putida W619 glycosyl transferase group 1 protein YP_001751705.1 5362172 R 390235 CDS YP_001751706.1 170724018 6113851 complement(5363296..5364354) 1 NC_010501.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5142 ADP-heptose; LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I 5364354 6113851 PputW619_4861 Pseudomonas putida W619 lipopolysaccharide heptosyltransferase I YP_001751706.1 5363296 R 390235 CDS YP_001751707.1 170724019 6113852 complement(5364355..5365404) 1 NC_010501.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5143 ADP-heptose; LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II 5365404 6113852 PputW619_4862 Pseudomonas putida W619 lipopolysaccharide heptosyltransferase II YP_001751707.1 5364355 R 390235 CDS YP_001751708.1 170724020 6113853 complement(5365578..5368511) 1 NC_010501.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 5368511 6113853 PputW619_4863 Pseudomonas putida W619 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001751708.1 5365578 R 390235 CDS YP_001751709.1 170724021 6113854 5368895..5371540 1 NC_010501.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 5371540 aceE 6113854 aceE Pseudomonas putida W619 pyruvate dehydrogenase subunit E1 YP_001751709.1 5368895 D 390235 CDS YP_001751710.1 170724022 6113855 5371554..5373197 1 NC_010501.1 KEGG: pen:PSEEN5146 dihydrolipoamide S-acetyltransferase, E2 component of the pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 5373197 6113855 PputW619_4865 Pseudomonas putida W619 dihydrolipoamide acetyltransferase YP_001751710.1 5371554 D 390235 CDS YP_001751711.1 170724023 6113856 5373558..5376248 1 NC_010501.1 KEGG: pen:PSEEN5147 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 5376248 6113856 PputW619_4866 Pseudomonas putida W619 PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001751711.1 5373558 D 390235 CDS YP_001751712.1 170724024 6113857 5376416..5377084 1 NC_010501.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 5377084 6113857 PputW619_4867 Pseudomonas putida W619 methionine sulfoxide reductase A YP_001751712.1 5376416 D 390235 CDS YP_001751713.1 170724025 6113858 5377087..5377710 1 NC_010501.1 PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5149 glutathione S-transferase; glutathione S-transferase domain-containing protein 5377710 6113858 PputW619_4868 Pseudomonas putida W619 glutathione S-transferase domain-containing protein YP_001751713.1 5377087 D 390235 CDS YP_001751714.1 170724026 6113859 complement(5377864..5379192) 1 NC_010501.1 PFAM: Inner membrane CreD family protein; KEGG: pen:PSEEN5150 tolerance to colicin E2; hypothetical protein 5379192 6113859 PputW619_4869 Pseudomonas putida W619 hypothetical protein YP_001751714.1 5377864 R 390235 CDS YP_001751715.1 170724027 6113860 complement(5379301..5380734) 1 NC_010501.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 5380734 6113860 PputW619_4870 Pseudomonas putida W619 sensory histidine kinase CreC YP_001751715.1 5379301 R 390235 CDS YP_001751716.1 170724028 6113861 complement(5380734..5381414) 1 NC_010501.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 5381414 6113861 PputW619_4871 Pseudomonas putida W619 DNA-binding response regulator CreB YP_001751716.1 5380734 R 390235 CDS YP_001751717.1 170724029 6113862 complement(5381615..5382115) 1 NC_010501.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN5153 hypothetical protein; hypothetical protein 5382115 6113862 PputW619_4872 Pseudomonas putida W619 hypothetical protein YP_001751717.1 5381615 R 390235 CDS YP_001751718.1 170724030 6113863 5382298..5383185 1 NC_010501.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN5154 acyltransferase; putative acyltransferase 5383185 6113863 PputW619_4873 Pseudomonas putida W619 putative acyltransferase YP_001751718.1 5382298 D 390235 CDS YP_001751719.1 170724031 6113864 complement(5383205..5383861) 1 NC_010501.1 KEGG: pen:PSEEN5155 hypothetical protein; hypothetical protein 5383861 6113864 PputW619_4874 Pseudomonas putida W619 hypothetical protein YP_001751719.1 5383205 R 390235 CDS YP_001751720.1 170724032 6113865 complement(5383965..5384237) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 5384237 6113865 PputW619_4875 Pseudomonas putida W619 hypothetical protein YP_001751720.1 5383965 R 390235 CDS YP_001751721.1 170724033 6113866 complement(5384256..5384504) 1 NC_010501.1 hypothetical protein 5384504 6113866 PputW619_4876 Pseudomonas putida W619 hypothetical protein YP_001751721.1 5384256 R 390235 CDS YP_001751722.1 170724034 6113867 5384919..5385845 1 NC_010501.1 KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 5385845 6113867 PputW619_4877 Pseudomonas putida W619 hypothetical protein YP_001751722.1 5384919 D 390235 CDS YP_001751723.1 170724035 6113868 5385893..5386795 1 NC_010501.1 KEGG: pst:PSPTO_5312 hypothetical protein; hypothetical protein 5386795 6113868 PputW619_4878 Pseudomonas putida W619 hypothetical protein YP_001751723.1 5385893 D 390235 CDS YP_001751724.1 170724036 6113869 complement(5386841..5388040) 1 NC_010501.1 TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5156 formaldehyde dehydrogenase, glutathione-independent; formaldehyde dehydrogenase 5388040 6113869 PputW619_4879 Pseudomonas putida W619 formaldehyde dehydrogenase YP_001751724.1 5386841 R 390235 CDS YP_001751725.1 170724037 6113870 complement(5388313..5389170) 1 NC_010501.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 5389170 6113870 PputW619_4880 Pseudomonas putida W619 formyltetrahydrofolate deformylase YP_001751725.1 5388313 R 390235 CDS YP_001751726.1 170724038 6113871 complement(5389181..5389813) 1 NC_010501.1 TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase gamma subunit; KEGG: pen:PSEEN5158 sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 5389813 6113871 PputW619_4881 Pseudomonas putida W619 sarcosine oxidase subunit gamma YP_001751726.1 5389181 R 390235 CDS YP_001751727.1 170724039 6113872 complement(5389993..5393010) 1 NC_010501.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5159 sarcosine oxidase (alpha subunit) oxidoreductase protein; sarcosine oxidase subunit alpha 5393010 6113872 PputW619_4882 Pseudomonas putida W619 sarcosine oxidase subunit alpha YP_001751727.1 5389993 R 390235 CDS YP_001751728.1 170724040 6113873 complement(5393007..5393342) 1 NC_010501.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta 5393342 6113873 PputW619_4883 Pseudomonas putida W619 sarcosine oxidase subunit delta YP_001751728.1 5393007 R 390235 CDS YP_001751729.1 170724041 6113874 complement(5393357..5394607) 1 NC_010501.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5161 sarcosine oxidase beta subunit; sarcosine oxidase subunit beta 5394607 6113874 PputW619_4884 Pseudomonas putida W619 sarcosine oxidase subunit beta YP_001751729.1 5393357 R 390235 CDS YP_001751730.1 170724042 6113875 complement(5394623..5395876) 1 NC_010501.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 5395876 6113875 PputW619_4885 Pseudomonas putida W619 serine hydroxymethyltransferase YP_001751730.1 5394623 R 390235 CDS YP_001751731.1 170724043 6113876 5396201..5397241 1 NC_010501.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN5163 low-specificity L-threonine aldolase; threonine aldolase 5397241 6113876 PputW619_4886 Pseudomonas putida W619 threonine aldolase YP_001751731.1 5396201 D 390235 CDS YP_001751732.1 170724044 6113877 complement(5397322..5399259) 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5164 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5399259 6113877 PputW619_4887 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751732.1 5397322 R 390235 CDS YP_001751733.1 170724045 6113878 complement(5399396..5399698) 1 NC_010501.1 PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5165 hypothetical protein; hypothetical protein 5399698 6113878 PputW619_4888 Pseudomonas putida W619 hypothetical protein YP_001751733.1 5399396 R 390235 CDS YP_001751734.1 170724046 6113879 complement(5399695..5399925) 1 NC_010501.1 KEGG: pen:PSEEN5166 hypothetical protein; hypothetical protein 5399925 6113879 PputW619_4889 Pseudomonas putida W619 hypothetical protein YP_001751734.1 5399695 R 390235 CDS YP_001751735.1 170724047 6113880 5400202..5401827 1 NC_010501.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5167 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5401827 6113880 PputW619_4890 Pseudomonas putida W619 methyl-accepting chemotaxis sensory transducer YP_001751735.1 5400202 D 390235 CDS YP_001751736.1 170724048 6113881 complement(5401979..5403151) 1 NC_010501.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN5168 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit 5403151 6113881 PputW619_4891 Pseudomonas putida W619 oxidoreductase FAD-binding subunit YP_001751736.1 5401979 R 390235 CDS YP_001751737.1 170724049 6113882 5403376..5404668 1 NC_010501.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN5169 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 5404668 6113882 PputW619_4892 Pseudomonas putida W619 Rieske (2Fe-2S) domain-containing protein YP_001751737.1 5403376 D 390235 CDS YP_001751738.1 170724050 6113883 complement(5404719..5405516) 1 NC_010501.1 KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 5405516 6113883 PputW619_4893 Pseudomonas putida W619 hypothetical protein YP_001751738.1 5404719 R 390235 CDS YP_001751739.1 170724051 6113884 complement(5405910..5406680) 1 NC_010501.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN5173 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit 5406680 6113884 PputW619_4894 Pseudomonas putida W619 electron transfer flavoprotein alpha/beta-subunit YP_001751739.1 5405910 R 390235 CDS YP_001751740.1 170724052 6113885 complement(5406691..5407923) 1 NC_010501.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN5174 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 5407923 6113885 PputW619_4895 Pseudomonas putida W619 electron transfer flavoprotein subunit alpha YP_001751740.1 5406691 R 390235 CDS YP_001751741.1 170724053 6113886 complement(5407923..5409875) 1 NC_010501.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN5175 iron-sulfur cluster-binding protein; hypothetical protein 5409875 6113886 PputW619_4896 Pseudomonas putida W619 hypothetical protein YP_001751741.1 5407923 R 390235 CDS YP_001751742.1 170724054 6113887 complement(5410084..5412144) 1 NC_010501.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN5176 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase 5412144 6113887 PputW619_4897 Pseudomonas putida W619 NADH:flavin oxidoreductase YP_001751742.1 5410084 R 390235 CDS YP_001751743.1 170724055 6113888 complement(5412160..5412690) 1 NC_010501.1 KEGG: pen:PSEEN5177 hypothetical protein; hypothetical protein 5412690 6113888 PputW619_4898 Pseudomonas putida W619 hypothetical protein YP_001751743.1 5412160 R 390235 CDS YP_001751744.1 170724056 6113889 complement(5412768..5413745) 1 NC_010501.1 PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN5178 dipeptidase; membrane dipeptidase 5413745 6113889 PputW619_4899 Pseudomonas putida W619 membrane dipeptidase YP_001751744.1 5412768 R 390235 CDS YP_001751745.1 170724057 6113890 5414032..5414448 1 NC_010501.1 PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN5179 hypothetical protein; hypothetical protein 5414448 6113890 PputW619_4900 Pseudomonas putida W619 hypothetical protein YP_001751745.1 5414032 D 390235 CDS YP_001751746.1 170724058 6113891 5414589..5415281 1 NC_010501.1 KEGG: psb:Psyr_4413 hypothetical protein; hypothetical protein 5415281 6113891 PputW619_4901 Pseudomonas putida W619 hypothetical protein YP_001751746.1 5414589 D 390235 CDS YP_001751747.1 170724059 6113892 5415354..5415971 1 NC_010501.1 hypothetical protein 5415971 6113892 PputW619_4902 Pseudomonas putida W619 hypothetical protein YP_001751747.1 5415354 D 390235 CDS YP_001751748.1 170724060 6113893 complement(5415975..5416922) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5180 transcriptional regulator, AraC family; AraC family transcriptional regulator 5416922 6113893 PputW619_4903 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751748.1 5415975 R 390235 CDS YP_001751749.1 170724061 6113894 5417067..5418011 1 NC_010501.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5181 substrate-binding region of ABC-type glycine transport system; choline ABC transporter periplasmic binding protein 5418011 6113894 PputW619_4904 Pseudomonas putida W619 choline ABC transporter periplasmic binding protein YP_001751749.1 5417067 D 390235 CDS YP_001751750.1 170724062 6113895 5418178..5419062 1 NC_010501.1 PFAM: protein of unknown function DUF849; KEGG: pen:PSEEN5182 hypothetical protein; hypothetical protein 5419062 6113895 PputW619_4905 Pseudomonas putida W619 hypothetical protein YP_001751750.1 5418178 D 390235 CDS YP_001751751.1 170724063 6113896 5419079..5420044 1 NC_010501.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 5420044 6113896 PputW619_4906 Pseudomonas putida W619 3-hydroxybutyryl-CoA dehydrogenase YP_001751751.1 5419079 D 390235 CDS YP_001751752.1 170724064 6113897 5420055..5420525 1 NC_010501.1 KEGG: pen:PSEEN5184 hypothetical protein; hypothetical protein 5420525 6113897 PputW619_4907 Pseudomonas putida W619 hypothetical protein YP_001751752.1 5420055 D 390235 CDS YP_001751753.1 170724065 6113898 complement(5420531..5422138) 1 NC_010501.1 KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; hypothetical protein 5422138 6113898 PputW619_4908 Pseudomonas putida W619 hypothetical protein YP_001751753.1 5420531 R 390235 CDS YP_001751754.1 170724066 6113899 5422484..5422741 1 NC_010501.1 KEGG: pen:PSEEN5185 hypothetical protein; hypothetical protein 5422741 6113899 PputW619_4909 Pseudomonas putida W619 hypothetical protein YP_001751754.1 5422484 D 390235 CDS YP_001751755.1 170724067 6113900 complement(5422872..5423978) 1 NC_010501.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5186 transcriptional regulator, AraC family; AraC family transcriptional regulator 5423978 6113900 PputW619_4910 Pseudomonas putida W619 AraC family transcriptional regulator YP_001751755.1 5422872 R 390235 CDS YP_001751756.1 170724068 6113901 complement(5424369..5425745) 1 NC_010501.1 KEGG: pen:PSEEN5187 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 5425745 6113901 PputW619_4911 Pseudomonas putida W619 L-serine dehydratase 1 YP_001751756.1 5424369 R 390235 CDS YP_001751757.1 170724069 6113902 5426187..5427134 1 NC_010501.1 TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5188 glycine betaine/L-proline ABC transporter, periplasmic binding protein; choline ABC transporter periplasmic binding protein 5427134 6113902 PputW619_4912 Pseudomonas putida W619 choline ABC transporter periplasmic binding protein YP_001751757.1 5426187 D 390235 CDS YP_001751758.1 170724070 6113903 5427219..5428064 1 NC_010501.1 TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5189 glycine betaine/L-proline ABC transporter, permease protein; choline ABC transporter permease 5428064 6113903 PputW619_4913 Pseudomonas putida W619 choline ABC transporter permease YP_001751758.1 5427219 D 390235 CDS YP_001751759.1 170724071 6113904 5428061..5429239 1 NC_010501.1 KEGG: pen:PSEEN5190 glycine betaine/L-proline ABC transporter, ATP-binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; choline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; choline ABC transporter ATP-binding protein 5429239 6113904 PputW619_4914 Pseudomonas putida W619 choline ABC transporter ATP-binding protein YP_001751759.1 5428061 D 390235 CDS YP_001751760.1 170724072 6113905 complement(5429354..5430124) 1 NC_010501.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 5430124 6113905 PputW619_4915 Pseudomonas putida W619 imidazole glycerol phosphate synthase subunit HisF YP_001751760.1 5429354 R 390235 CDS YP_001751761.1 170724073 6113906 complement(5430135..5430872) 1 NC_010501.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 5430872 6113906 PputW619_4916 Pseudomonas putida W619 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001751761.1 5430135 R 390235 CDS YP_001751762.1 170724074 6113907 complement(5430985..5431245) 1 NC_010501.1 KEGG: pen:PSEEN5193 hypothetical protein; hypothetical protein 5431245 6113907 PputW619_4917 Pseudomonas putida W619 hypothetical protein YP_001751762.1 5430985 R 390235 CDS YP_001751763.1 170724075 6113908 complement(5431246..5431884) 1 NC_010501.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 5431884 hisH 6113908 hisH Pseudomonas putida W619 imidazole glycerol phosphate synthase subunit HisH YP_001751763.1 5431246 R 390235 CDS YP_001751764.1 170724076 6113909 complement(5431885..5432478) 1 NC_010501.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 5432478 hisB 6113909 hisB Pseudomonas putida W619 imidazoleglycerol-phosphate dehydratase YP_001751764.1 5431885 R 390235 CDS YP_001751765.1 170724077 6113910 complement(5432711..5434369) 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5196 permease, MFS superfamily; major facilitator transporter 5434369 6113910 PputW619_4920 Pseudomonas putida W619 major facilitator transporter YP_001751765.1 5432711 R 390235 CDS YP_001751766.1 170724078 6113911 5434740..5436983 1 NC_010501.1 PFAM: AsmA family protein; KEGG: pen:PSEEN5198 AsmA protein; AsmA family protein 5436983 6113911 PputW619_4921 Pseudomonas putida W619 AsmA family protein YP_001751766.1 5434740 D 390235 CDS YP_001751767.1 170724079 6113912 5436980..5438047 1 NC_010501.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pen:PSEEN5199 A/G specific adenine glycosylase; A/G-specific adenine glycosylase 5438047 6113912 PputW619_4922 Pseudomonas putida W619 A/G-specific adenine glycosylase YP_001751767.1 5436980 D 390235 CDS YP_001751768.1 170724080 6113913 5438044..5438316 1 NC_010501.1 PFAM: Fe(II) trafficking protein YggX; KEGG: pfo:Pfl_0319 hypothetical protein; hypothetical protein 5438316 6113913 PputW619_4923 Pseudomonas putida W619 hypothetical protein YP_001751768.1 5438044 D 390235 CDS YP_001751769.1 170724081 6113915 5438674..5439669 1 NC_010501.1 PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN5203 polyphosphate kinase 2; hypothetical protein 5439669 6113915 PputW619_4924 Pseudomonas putida W619 hypothetical protein YP_001751769.1 5438674 D 390235 CDS YP_001751770.1 170724082 6113916 5439782..5440225 1 NC_010501.1 KEGG: pen:PSEEN5204 hypothetical protein; hypothetical protein 5440225 6113916 PputW619_4925 Pseudomonas putida W619 hypothetical protein YP_001751770.1 5439782 D 390235 CDS YP_001751771.1 170724083 6113917 complement(5440334..5441719) 1 NC_010501.1 TIGRFAM: GABA permease; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN5205 gamma-aminobutyrate transporter; GABA permease 5441719 6113917 PputW619_4926 Pseudomonas putida W619 GABA permease YP_001751771.1 5440334 R 390235 CDS YP_001751772.1 170724084 6113918 5442360..5443133 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5207 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5443133 6113918 PputW619_4927 Pseudomonas putida W619 ABC transporter-like protein YP_001751772.1 5442360 D 390235 CDS YP_001751773.1 170724085 6113919 5443145..5443897 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; KEGG: pfl:PFL_0342 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5443897 6113919 PputW619_4928 Pseudomonas putida W619 extracellular solute-binding protein YP_001751773.1 5443145 D 390235 CDS YP_001751774.1 170724086 6113920 5443953..5444648 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5209 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5444648 6113920 PputW619_4929 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001751774.1 5443953 D 390235 CDS YP_001751775.1 170724087 6113921 5444645..5445334 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5445334 6113921 PputW619_4930 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001751775.1 5444645 D 390235 CDS YP_001751776.1 170724088 6113922 5445420..5446625 1 NC_010501.1 KEGG: pen:PSEEN5211 hypothetical protein; hypothetical protein 5446625 6113922 PputW619_4931 Pseudomonas putida W619 hypothetical protein YP_001751776.1 5445420 D 390235 CDS YP_001751777.1 170724089 6113923 complement(5446910..5447182) 1 NC_010501.1 KEGG: pen:PSEEN0939 hypothetical protein; hypothetical protein 5447182 6113923 PputW619_4932 Pseudomonas putida W619 hypothetical protein YP_001751777.1 5446910 R 390235 CDS YP_001751778.1 170724090 6113924 complement(5447172..5447453) 1 NC_010501.1 hypothetical protein 5447453 6113924 PputW619_4933 Pseudomonas putida W619 hypothetical protein YP_001751778.1 5447172 R 390235 CDS YP_001751779.1 170724091 6113925 5447962..5448255 1 NC_010501.1 KEGG: pen:PSEEN5218 hypothetical protein; hypothetical protein 5448255 6113925 PputW619_4934 Pseudomonas putida W619 hypothetical protein YP_001751779.1 5447962 D 390235 CDS YP_001751780.1 170724092 6113927 5448592..5449911 1 NC_010501.1 PFAM: integrase family protein; KEGG: pfo:Pfl_3064 phage integrase; integrase family protein 5449911 6113927 PputW619_4935 Pseudomonas putida W619 integrase family protein YP_001751780.1 5448592 D 390235 CDS YP_001751781.1 170724093 6113928 5450842..5451822 1 NC_010501.1 KEGG: pfo:Pfl_0746 phage integrase; phage integrase 5451822 6113928 PputW619_4936 Pseudomonas putida W619 phage integrase YP_001751781.1 5450842 D 390235 CDS YP_001751782.1 170724094 6113929 5452249..5454717 1 NC_010501.1 KEGG: reh:H16_A3231 hypothetical protein, contains NB-ARC domain; hypothetical protein 5454717 6113929 PputW619_4937 Pseudomonas putida W619 hypothetical protein YP_001751782.1 5452249 D 390235 CDS YP_001751783.1 170724095 6113930 complement(5455115..5455402) 1 NC_010501.1 PFAM: helix-turn-helix domain protein; KEGG: spe:Spro_1852 transcriptional regulator, XRE family; XRE family transcriptional regulator 5455402 6113930 PputW619_4938 Pseudomonas putida W619 XRE family transcriptional regulator YP_001751783.1 5455115 R 390235 CDS YP_001751784.1 170724096 6113931 5455718..5457379 1 NC_010501.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN0265 glutamate synthase, large subunit; glutamate synthase 5457379 6113931 PputW619_4939 Pseudomonas putida W619 glutamate synthase YP_001751784.1 5455718 D 390235 CDS YP_001751785.1 170724097 6113932 complement(5457529..5458848) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0264 outer membrane protein OprE3; outer membrane porin 5458848 6113932 PputW619_4940 Pseudomonas putida W619 outer membrane porin YP_001751785.1 5457529 R 390235 CDS YP_001751786.1 170724098 6113933 complement(5459278..5459475) 1 NC_010501.1 KEGG: pfo:Pfl_0292 hypothetical protein; hypothetical protein 5459475 6113933 PputW619_4941 Pseudomonas putida W619 hypothetical protein YP_001751786.1 5459278 R 390235 CDS YP_001751787.1 170724099 6113934 complement(5459657..5460763) 1 NC_010501.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 5460763 6113934 PputW619_4942 Pseudomonas putida W619 agmatine deiminase YP_001751787.1 5459657 R 390235 CDS YP_001751788.1 170724100 6113935 complement(5460917..5463817) 1 NC_010501.1 PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: pen:PSEEN0260 aminotransferase, class III; hypothetical protein 5463817 6113935 PputW619_4943 Pseudomonas putida W619 hypothetical protein YP_001751788.1 5460917 R 390235 CDS YP_001751789.1 170724101 6113936 5464009..5464551 1 NC_010501.1 KEGG: pen:PSEEN0251 dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 5464551 6113936 PputW619_4944 Pseudomonas putida W619 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001751789.1 5464009 D 390235 CDS YP_001751790.1 170724102 6113937 5464548..5465408 1 NC_010501.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0250 dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase); dTDP-4-dehydrorhamnose reductase 5465408 6113937 PputW619_4945 Pseudomonas putida W619 dTDP-4-dehydrorhamnose reductase YP_001751790.1 5464548 D 390235 CDS YP_001751791.1 170724103 6113938 5465447..5467261 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0249 sensor histidine kinase; histidine kinase 5467261 6113938 PputW619_4946 Pseudomonas putida W619 histidine kinase YP_001751791.1 5465447 D 390235 CDS YP_001751792.1 170724104 6113939 5467258..5468667 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0248 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 5468667 6113939 PputW619_4947 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001751792.1 5467258 D 390235 CDS YP_001751793.1 170724105 6113940 5468664..5469119 1 NC_010501.1 TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: pen:PSEEN0247 hypothetical protein; thioesterase domain-containing protein 5469119 6113940 PputW619_4948 Pseudomonas putida W619 thioesterase domain-containing protein YP_001751793.1 5468664 D 390235 CDS YP_001751794.1 170724106 6113941 complement(5469108..5469935) 1 NC_010501.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN0246 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 5469935 6113941 PputW619_4949 Pseudomonas putida W619 3'(2'),5'-bisphosphate nucleotidase YP_001751794.1 5469108 R 390235 CDS YP_001751795.1 170724107 6113942 complement(5469932..5470498) 1 NC_010501.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 5470498 nudE 6113942 nudE Pseudomonas putida W619 ADP-ribose diphosphatase NudE YP_001751795.1 5469932 R 390235 CDS YP_001751796.1 170724108 6113943 5470563..5471225 1 NC_010501.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0244 hydrolase, haloacid dehalogenase family, subfamily IA, variant 3; HAD family hydrolase 5471225 6113943 PputW619_4951 Pseudomonas putida W619 HAD family hydrolase YP_001751796.1 5470563 D 390235 CDS YP_001751797.1 170724109 6113944 complement(5471340..5471792) 1 NC_010501.1 PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: pen:PSEEN0243 hypothetical protein; LysM domain/BON superfamily protein 5471792 6113944 PputW619_4952 Pseudomonas putida W619 LysM domain/BON superfamily protein YP_001751797.1 5471340 R 390235 CDS YP_001751798.1 170724110 6113945 5471973..5472803 1 NC_010501.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pen:PSEEN0241 formate dehydrogenase accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 5472803 6113945 PputW619_4953 Pseudomonas putida W619 formate dehydrogenase family accessory protein FdhD YP_001751798.1 5471973 D 390235 CDS YP_001751799.1 170724111 6113946 5472809..5475154 1 NC_010501.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN0240 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 5475154 6113946 PputW619_4954 Pseudomonas putida W619 oxidoreductase alpha (molybdopterin) subunit YP_001751799.1 5472809 D 390235 CDS YP_001751800.1 170724112 6113947 5475368..5475847 1 NC_010501.1 PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN0239 hypothetical protein; 17 kDa surface antigen 5475847 6113947 PputW619_4955 Pseudomonas putida W619 17 kDa surface antigen YP_001751800.1 5475368 D 390235 CDS YP_001751801.1 170724113 6113948 complement(5475902..5476342) 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0236 thioesterase; thioesterase superfamily protein 5476342 6113948 PputW619_4956 Pseudomonas putida W619 thioesterase superfamily protein YP_001751801.1 5475902 R 390235 CDS YP_001751802.1 170724114 6113949 5476465..5476908 1 NC_010501.1 KEGG: plu:plu2211 hypothetical protein; hypothetical protein 5476908 6113949 PputW619_4957 Pseudomonas putida W619 hypothetical protein YP_001751802.1 5476465 D 390235 CDS YP_001751803.1 170724115 6113950 5476908..5477180 1 NC_010501.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: plu:plu2210 hypothetical protein; addiction module antitoxin 5477180 6113950 PputW619_4958 Pseudomonas putida W619 addiction module antitoxin YP_001751803.1 5476908 D 390235 CDS YP_001751804.1 170724116 6113951 complement(5477233..5478774) 1 NC_010501.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 5478774 6113951 PputW619_4959 Pseudomonas putida W619 phosphoenolpyruvate carboxykinase YP_001751804.1 5477233 R 390235 CDS YP_001751805.1 170724117 6113952 complement(5478954..5479853) 1 NC_010501.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 5479853 hslO 6113952 hslO Pseudomonas putida W619 Hsp33-like chaperonin YP_001751805.1 5478954 R 390235 CDS YP_001751806.1 170724118 6113953 5479973..5480767 1 NC_010501.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pen:PSEEN0232 hypothetical protein; PA-phosphatase-like phosphoesterase 5480767 6113953 PputW619_4961 Pseudomonas putida W619 PA-phosphatase-like phosphoesterase YP_001751806.1 5479973 D 390235 CDS YP_001751807.1 170724119 6113954 complement(5480795..5481196) 1 NC_010501.1 PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN0231 heat shock protein 15, ribosome associated; RNA-binding S4 domain-containing protein 5481196 6113954 PputW619_4962 Pseudomonas putida W619 RNA-binding S4 domain-containing protein YP_001751807.1 5480795 R 390235 CDS YP_001751808.1 170724120 6113955 5481249..5481788 1 NC_010501.1 PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN0230 hypothetical protein; hypothetical protein 5481788 6113955 PputW619_4963 Pseudomonas putida W619 hypothetical protein YP_001751808.1 5481249 D 390235 CDS YP_001751809.1 170724121 6113956 5481785..5482690 1 NC_010501.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: pen:PSEEN0229 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 5482690 6113956 PputW619_4964 Pseudomonas putida W619 alpha-L-glutamate ligase YP_001751809.1 5481785 D 390235 CDS YP_001751810.1 170724122 6113957 complement(5482760..5484073) 1 NC_010501.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0228 osmolarity sensor protein EnvZ; integral membrane sensor signal transduction histidine kinase 5484073 6113957 PputW619_4965 Pseudomonas putida W619 integral membrane sensor signal transduction histidine kinase YP_001751810.1 5482760 R 390235 CDS YP_001751811.1 170724123 6113958 complement(5484087..5484827) 1 NC_010501.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 5484827 ompR 6113958 ompR Pseudomonas putida W619 osmolarity response regulator YP_001751811.1 5484087 R 390235 CDS YP_001751812.1 170724124 6113959 5485055..5487379 1 NC_010501.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: pen:PSEEN0226 RNA-binding transcription accessory protein; RNA-binding S1 domain-containing protein 5487379 6113959 PputW619_4967 Pseudomonas putida W619 RNA-binding S1 domain-containing protein YP_001751812.1 5485055 D 390235 CDS YP_001751813.1 170724125 6113960 5487379..5487762 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0225 thioesterase; thioesterase superfamily protein 5487762 6113960 PputW619_4968 Pseudomonas putida W619 thioesterase superfamily protein YP_001751813.1 5487379 D 390235 CDS YP_001751814.1 170724126 6113961 5487917..5489494 1 NC_010501.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 5489494 6113961 PputW619_4969 Pseudomonas putida W619 glutamate--cysteine ligase YP_001751814.1 5487917 D 390235 CDS YP_001751815.1 170724127 6113962 5489494..5490120 1 NC_010501.1 PFAM: regulatory protein TetR; KEGG: pen:PSEEN0223 transcriptional regulator, TetR family; TetR family transcriptional regulator 5490120 6113962 PputW619_4970 Pseudomonas putida W619 TetR family transcriptional regulator YP_001751815.1 5489494 D 390235 CDS YP_001751816.1 170724128 6113963 complement(5490243..5490458) 1 NC_010501.1 PFAM: TOBE domain protein; KEGG: pen:PSEEN0222 organosulfonate utilization protein SsuF; TOBE domain-containing protein 5490458 6113963 PputW619_4971 Pseudomonas putida W619 TOBE domain-containing protein YP_001751816.1 5490243 R 390235 CDS YP_001751817.1 170724129 6113964 complement(5490503..5491315) 1 NC_010501.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 5491315 ssuB 6113964 ssuB Pseudomonas putida W619 aliphatic sulfonates transport ATP-binding subunit YP_001751817.1 5490503 R 390235 CDS YP_001751818.1 170724130 6113965 complement(5491312..5492109) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0220 sulfonate ABC transporter, permease protein SsuC; binding-protein-dependent transport system inner membrane protein 5492109 6113965 PputW619_4973 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751818.1 5491312 R 390235 CDS YP_001751819.1 170724131 6113966 complement(5492120..5493268) 1 NC_010501.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 5493268 6113966 PputW619_4974 Pseudomonas putida W619 alkanesulfonate monooxygenase YP_001751819.1 5492120 R 390235 CDS YP_001751820.1 170724132 6113967 complement(5493329..5494294) 1 NC_010501.1 KEGG: pen:PSEEN0218 sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein 5494294 6113967 PputW619_4975 Pseudomonas putida W619 aliphatic sulfonate ABC transporter substrate-binding protein YP_001751820.1 5493329 R 390235 CDS YP_001751821.1 170724133 6113968 complement(5494388..5494981) 1 NC_010501.1 PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN0217 NAD(P)H-dependent FMN reductase; NAD(P)H-dependent FMN reductase 5494981 6113968 PputW619_4976 Pseudomonas putida W619 NAD(P)H-dependent FMN reductase YP_001751821.1 5494388 R 390235 CDS YP_001751822.1 170724134 6113969 complement(5495273..5495911) 1 NC_010501.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN0215 thiol-specific antioxidant protein LsfA; peroxidase 5495911 6113969 PputW619_4977 Pseudomonas putida W619 peroxidase YP_001751822.1 5495273 R 390235 CDS YP_001751823.1 170724135 6113970 complement(5496076..5497407) 1 NC_010501.1 PFAM: outer membrane porin; KEGG: pen:PSEEN0214 outer membrane porin OprE; outer membrane porin 5497407 6113970 PputW619_4978 Pseudomonas putida W619 outer membrane porin YP_001751823.1 5496076 R 390235 CDS YP_001751824.1 170724136 6113971 5497907..5498878 1 NC_010501.1 KEGG: pen:PSEEN0213 taurine ABC transporter, periplasmic taurine-binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; taurine ABC transporter periplasmic binding protein 5498878 6113971 PputW619_4979 Pseudomonas putida W619 taurine ABC transporter periplasmic binding protein YP_001751824.1 5497907 D 390235 CDS YP_001751825.1 170724137 6113972 5498892..5499680 1 NC_010501.1 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 5499680 tauB 6113972 tauB Pseudomonas putida W619 taurine transporter ATP-binding subunit YP_001751825.1 5498892 D 390235 CDS YP_001751826.1 170724138 6113973 5499677..5500516 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0211 taurine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5500516 6113973 PputW619_4981 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751826.1 5499677 D 390235 CDS YP_001751827.1 170724139 6113974 5500569..5501402 1 NC_010501.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 5501402 tauD 6113974 tauD Pseudomonas putida W619 taurine dioxygenase YP_001751827.1 5500569 D 390235 CDS YP_001751828.1 170724140 6113975 complement(5501522..5503519) 1 NC_010501.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0209 choline/glycine betaine transporter, BCCT family; choline/carnitine/betaine transporter 5503519 6113975 PputW619_4983 Pseudomonas putida W619 choline/carnitine/betaine transporter YP_001751828.1 5501522 R 390235 CDS YP_001751829.1 170724141 6113976 complement(5503728..5504660) 1 NC_010501.1 KEGG: pen:PSEEN0208 serine O-acetyltransferase; Serine O-acetyltransferase 5504660 6113976 PputW619_4984 Pseudomonas putida W619 Serine O-acetyltransferase YP_001751829.1 5503728 R 390235 CDS YP_001751830.1 170724142 6113977 5504930..5505724 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN0207 amino acid ABC transporter, periplasmic amino acid-binding protein; cystine transporter subunit 5505724 6113977 PputW619_4985 Pseudomonas putida W619 cystine transporter subunit YP_001751830.1 5504930 D 390235 CDS YP_001751831.1 170724143 6113978 5505721..5506389 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0206 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5506389 6113978 PputW619_4986 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001751831.1 5505721 D 390235 CDS YP_001751832.1 170724144 6113979 5506392..5507150 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0205 amino acid ABC transporter, ATP-binding protein; putative amino-acid ABC transporter ATP-binding protein YecC 5507150 6113979 PputW619_4987 Pseudomonas putida W619 putative amino-acid ABC transporter ATP-binding protein YecC YP_001751832.1 5506392 D 390235 CDS YP_001751833.1 170724145 6113980 5507423..5508664 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0203 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 5508664 6113980 PputW619_4988 Pseudomonas putida W619 type 2 acyl-CoA dehydrogenase YP_001751833.1 5507423 D 390235 CDS YP_001751834.1 170724146 6113981 5508738..5509919 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0202 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 5509919 6113981 PputW619_4989 Pseudomonas putida W619 type 2 acyl-CoA dehydrogenase YP_001751834.1 5508738 D 390235 CDS YP_001751835.1 170724147 6113982 5509919..5511313 1 NC_010501.1 KEGG: pen:PSEEN0201 monooxygenase; monooxygenase 5511313 6113982 PputW619_4990 Pseudomonas putida W619 monooxygenase YP_001751835.1 5509919 D 390235 CDS YP_001751836.1 170724148 6113983 5511306..5512106 1 NC_010501.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0200 D-methionine-binding periplasmic lipoprotein MetQ; NLPA lipoprotein 5512106 6113983 PputW619_4991 Pseudomonas putida W619 NLPA lipoprotein YP_001751836.1 5511306 D 390235 CDS YP_001751837.1 170724149 6113984 5512108..5513217 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0199 D-methionine ABC transporter MetN, ATP-binding protein; ABC transporter-like protein 5513217 6113984 PputW619_4992 Pseudomonas putida W619 ABC transporter-like protein YP_001751837.1 5512108 D 390235 CDS YP_001751838.1 170724150 6113985 5513207..5513851 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0198 D-methionine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5513851 6113985 PputW619_4993 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751838.1 5513207 D 390235 CDS YP_001751839.1 170724151 6113986 complement(5513876..5515771) 1 NC_010501.1 KEGG: pen:PSEEN0197 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5515771 6113986 PputW619_4994 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001751839.1 5513876 R 390235 CDS YP_001751840.1 170724152 6113987 5515918..5517102 1 NC_010501.1 PFAM: fatty acid desaturase; KEGG: pen:PSEEN0196 fatty acid desaturase; fatty acid desaturase 5517102 6113987 PputW619_4995 Pseudomonas putida W619 fatty acid desaturase YP_001751840.1 5515918 D 390235 CDS YP_001751841.1 170724153 6113988 5517244..5518230 1 NC_010501.1 KEGG: pen:PSEEN0195 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 5518230 6113988 PputW619_4996 Pseudomonas putida W619 PAS/PAC sensor-containing diguanylate cyclase YP_001751841.1 5517244 D 390235 CDS YP_001751842.1 170724154 6113989 complement(5518263..5519525) 1 NC_010501.1 PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0192 response regulator; putative signal transduction protein 5519525 6113989 PputW619_4997 Pseudomonas putida W619 putative signal transduction protein YP_001751842.1 5518263 R 390235 CDS YP_001751843.1 170724155 6113990 complement(5519663..5520940) 1 NC_010501.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 5520940 6113990 PputW619_4998 Pseudomonas putida W619 4-aminobutyrate aminotransferase YP_001751843.1 5519663 R 390235 CDS YP_001751844.1 170724156 6113991 complement(5521119..5522561) 1 NC_010501.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 5522561 gabD 6113991 gabD Pseudomonas putida W619 succinate-semialdehyde dehydrogenase I YP_001751844.1 5521119 R 390235 CDS YP_001751845.1 170724157 6113992 complement(5522825..5524501) 1 NC_010501.1 PFAM: Arylsulfotransferase; KEGG: pen:PSEEN0187 arylsulfotransferase; arylsulfotransferase 5524501 6113992 PputW619_5000 Pseudomonas putida W619 arylsulfotransferase YP_001751845.1 5522825 R 390235 CDS YP_001751846.1 170724158 6113993 complement(5524519..5526855) 1 NC_010501.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0186 TonB-dependent receptor; TonB-dependent receptor 5526855 6113993 PputW619_5001 Pseudomonas putida W619 TonB-dependent receptor YP_001751846.1 5524519 R 390235 CDS YP_001751847.1 170724159 6113994 5527047..5527961 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0184 transcritpional regulator, LysR family; LysR family transcriptional regulator 5527961 6113994 PputW619_5002 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751847.1 5527047 D 390235 CDS YP_001751848.1 170724160 6113995 complement(5528009..5528914) 1 NC_010501.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0183 alkylsulfatase AtsK; taurine dioxygenase 5528914 6113995 PputW619_5003 Pseudomonas putida W619 taurine dioxygenase YP_001751848.1 5528009 R 390235 CDS YP_001751849.1 170724161 6113996 complement(5528952..5529995) 1 NC_010501.1 PFAM: NMT1/THI5 like domain protein; KEGG: pen:PSEEN0182 aryl sulfate ester ABC transporter AstR, periplasmic binding protein; NMT1/THI5-like domain-containing protein 5529995 6113996 PputW619_5004 Pseudomonas putida W619 NMT1/THI5-like domain-containing protein YP_001751849.1 5528952 R 390235 CDS YP_001751850.1 170724162 6113997 5530294..5531880 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0181 alkyl sulfate ester ABC transporter AstB, permease protein; binding-protein-dependent transport system inner membrane protein 5531880 6113997 PputW619_5005 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751850.1 5530294 D 390235 CDS YP_001751851.1 170724163 6113998 5531877..5532740 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0180 alkyl sulfate ester ABC transporter AstC, ATP-binding protein; ABC transporter-like protein 5532740 6113998 PputW619_5006 Pseudomonas putida W619 ABC transporter-like protein YP_001751851.1 5531877 D 390235 CDS YP_001751852.1 170724164 6113999 complement(5532746..5533045) 1 NC_010501.1 KEGG: pen:PSEEN0178 hypothetical protein; hypothetical protein 5533045 6113999 PputW619_5007 Pseudomonas putida W619 hypothetical protein YP_001751852.1 5532746 R 390235 CDS YP_001751853.1 170724165 6114000 complement(5533045..5534010) 1 NC_010501.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: pen:PSEEN0177 hypothetical protein; HEAT repeat-containing PBS lyase 5534010 6114000 PputW619_5008 Pseudomonas putida W619 HEAT repeat-containing PBS lyase YP_001751853.1 5533045 R 390235 CDS YP_001751854.1 170724166 6114001 complement(5534007..5534864) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA2294 putative sulfonate transport system ATP-binding protein; ABC transporter-like protein 5534864 6114001 PputW619_5009 Pseudomonas putida W619 ABC transporter-like protein YP_001751854.1 5534007 R 390235 CDS YP_001751855.1 170724167 6114002 complement(5534864..5535646) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3160 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 5535646 6114002 PputW619_5010 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751855.1 5534864 R 390235 CDS YP_001751856.1 170724168 6114003 complement(5535662..5537068) 1 NC_010501.1 KEGG: pae:PA2296 putative sulfonate transport system substrate-binding protein; putative sulfonate transport system substrate-binding protein 5537068 6114003 PputW619_5011 Pseudomonas putida W619 putative sulfonate transport system substrate-binding protein YP_001751856.1 5535662 R 390235 CDS YP_001751857.1 170724169 6114004 complement(5537188..5537433) 1 NC_010501.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0176 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 5537433 6114004 PputW619_5012 Pseudomonas putida W619 4Fe-4S ferredoxin YP_001751857.1 5537188 R 390235 CDS YP_001751858.1 170724170 6114005 complement(5537503..5539227) 1 NC_010501.1 PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0175 succinate dehydrogenase (fumarate reductase); putative oxidoreductase 5539227 6114005 PputW619_5013 Pseudomonas putida W619 putative oxidoreductase YP_001751858.1 5537503 R 390235 CDS YP_001751859.1 170724171 6114006 complement(5539224..5539973) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN0174 transcriptional regulator, GntR family; GntR family transcriptional regulator 5539973 6114006 PputW619_5014 Pseudomonas putida W619 GntR family transcriptional regulator YP_001751859.1 5539224 R 390235 CDS YP_001751860.1 170724172 6114007 5540224..5541909 1 NC_010501.1 PFAM: type II secretion system protein E; KEGG: pen:PSEEN5305 type II secretion system protein E; type II secretion system protein E 5541909 6114007 PputW619_5015 Pseudomonas putida W619 type II secretion system protein E YP_001751860.1 5540224 D 390235 CDS YP_001751861.1 170724173 6114008 5541999..5542313 1 NC_010501.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5306 hypothetical protein; hypothetical protein 5542313 6114008 PputW619_5016 Pseudomonas putida W619 hypothetical protein YP_001751861.1 5541999 D 390235 CDS YP_001751862.1 170724174 6114009 complement(5542348..5545221) 1 NC_010501.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 5545221 6114009 PputW619_5017 Pseudomonas putida W619 glycine dehydrogenase YP_001751862.1 5542348 R 390235 CDS YP_001751863.1 170724175 6114010 complement(5545353..5545736) 1 NC_010501.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 5545736 6114010 PputW619_5018 Pseudomonas putida W619 glycine cleavage system protein H YP_001751863.1 5545353 R 390235 CDS YP_001751864.1 170724176 6114011 complement(5545784..5546866) 1 NC_010501.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 5546866 gcvT 6114011 gcvT Pseudomonas putida W619 glycine cleavage system aminomethyltransferase T YP_001751864.1 5545784 R 390235 CDS YP_001751865.1 170724177 6114012 complement(5546990..5548660) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5310 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5548660 6114012 PputW619_5020 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751865.1 5546990 R 390235 CDS YP_001751866.1 170724178 6114013 complement(5548776..5549777) 1 NC_010501.1 PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5311 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5549777 6114013 PputW619_5021 Pseudomonas putida W619 extracellular solute-binding protein YP_001751866.1 5548776 R 390235 CDS YP_001751867.1 170724179 6114014 complement(5549934..5551157) 1 NC_010501.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 5551157 6114014 PputW619_5022 Pseudomonas putida W619 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_001751867.1 5549934 R 390235 CDS YP_001751868.1 170724180 6114015 complement(5551161..5551643) 1 NC_010501.1 KEGG: pen:PSEEN5313 hypothetical protein; hypothetical protein 5551643 6114015 PputW619_5023 Pseudomonas putida W619 hypothetical protein YP_001751868.1 5551161 R 390235 CDS YP_001751869.1 170724181 6114016 complement(5551640..5552839) 1 NC_010501.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 5552839 6114016 PputW619_5024 Pseudomonas putida W619 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001751869.1 5551640 R 390235 CDS YP_001751870.1 170724182 6114017 complement(5552836..5554170) 1 NC_010501.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pen:PSEEN5315 aminopeptidase P; peptidase M24 5554170 6114017 PputW619_5025 Pseudomonas putida W619 peptidase M24 YP_001751870.1 5552836 R 390235 CDS YP_001751871.1 170724183 6114018 complement(5554193..5554747) 1 NC_010501.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 5554747 6114018 PputW619_5026 Pseudomonas putida W619 hypothetical protein YP_001751871.1 5554193 R 390235 CDS YP_001751872.1 170724184 6114019 5554894..5555112 1 NC_010501.1 KEGG: pen:PSEEN5317 hypothetical protein; hypothetical protein 5555112 6114019 PputW619_5027 Pseudomonas putida W619 hypothetical protein YP_001751872.1 5554894 D 390235 CDS YP_001751873.1 170724185 6114020 5555109..5555429 1 NC_010501.1 PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5318 hypothetical protein; hypothetical protein 5555429 6114020 PputW619_5028 Pseudomonas putida W619 hypothetical protein YP_001751873.1 5555109 D 390235 CDS YP_001751874.1 170724186 6114022 5555696..5556304 1 NC_010501.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pen:PSEEN5319 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5556304 6114022 PputW619_5029 Pseudomonas putida W619 5-formyltetrahydrofolate cyclo-ligase YP_001751874.1 5555696 D 390235 CDS YP_001751875.1 170724187 6114023 complement(5556324..5556473) 1 NC_010501.1 KEGG: pen:PSEEN5320 hypothetical protein; hypothetical protein 5556473 6114023 PputW619_5030 Pseudomonas putida W619 hypothetical protein YP_001751875.1 5556324 R 390235 CDS YP_001751876.1 170724188 6114024 5556652..5557104 1 NC_010501.1 PFAM: protein of unknown function DUF55; KEGG: pen:PSEEN5321 hypothetical protein; hypothetical protein 5557104 6114024 PputW619_5031 Pseudomonas putida W619 hypothetical protein YP_001751876.1 5556652 D 390235 CDS YP_001751877.1 170724189 6114025 complement(5557138..5557542) 1 NC_010501.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pen:PSEEN5325 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 5557542 6114025 PputW619_5032 Pseudomonas putida W619 flagellar basal body-associated protein FliL-like protein YP_001751877.1 5557138 R 390235 CDS YP_001751878.1 170724190 6114026 5557699..5558676 1 NC_010501.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 5558676 6114026 PputW619_5033 Pseudomonas putida W619 alcohol dehydrogenase YP_001751878.1 5557699 D 390235 CDS YP_001751879.1 170724191 6114027 complement(5558747..5559397) 1 NC_010501.1 PFAM: ChaC family protein; KEGG: pen:PSEEN5327 transporter, ChaC-related; ChaC family protein 5559397 6114027 PputW619_5034 Pseudomonas putida W619 ChaC family protein YP_001751879.1 5558747 R 390235 CDS YP_001751880.1 170724192 6114028 complement(5559643..5560611) 1 NC_010501.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 5560611 6114028 PputW619_5035 Pseudomonas putida W619 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_001751880.1 5559643 R 390235 CDS YP_001751881.1 170724193 6114029 complement(5560611..5562077) 1 NC_010501.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pen:PSEEN5330 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase 5562077 6114029 PputW619_5036 Pseudomonas putida W619 UbiD family decarboxylase YP_001751881.1 5560611 R 390235 CDS YP_001751882.1 170724194 6114030 complement(5562282..5563541) 1 NC_010501.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 5563541 rho 6114030 rho Pseudomonas putida W619 transcription termination factor Rho YP_001751882.1 5562282 R 390235 CDS YP_001751883.1 170724195 6114031 complement(5563770..5564099) 1 NC_010501.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pst:PSPTO_5243 thioredoxin; thioredoxin 5564099 6114031 PputW619_5038 Pseudomonas putida W619 thioredoxin YP_001751883.1 5563770 R 390235 CDS YP_001751884.1 170724196 6114032 5564343..5565845 1 NC_010501.1 PFAM: Ppx/GppA phosphatase; KEGG: pen:PSEEN5335 exopolyphosphatase (ExopolyPase) (metaphosphatase); Ppx/GppA phosphatase 5565845 6114032 PputW619_5039 Pseudomonas putida W619 Ppx/GppA phosphatase YP_001751884.1 5564343 D 390235 CDS YP_001751885.1 170724197 6114033 complement(5565832..5568072) 1 NC_010501.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 5568072 6114033 PputW619_5040 Pseudomonas putida W619 polyphosphate kinase YP_001751885.1 5565832 R 390235 CDS YP_001751886.1 170724198 6114034 5568288..5568932 1 NC_010501.1 KEGG: pen:PSEEN5338 hypothetical protein; hypothetical protein 5568932 6114034 PputW619_5041 Pseudomonas putida W619 hypothetical protein YP_001751886.1 5568288 D 390235 CDS YP_001751887.1 170724199 6114035 complement(5568765..5570060) 1 NC_010501.1 PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN5339 hypothetical protein; fatty acid hydroxylase 5570060 6114035 PputW619_5042 Pseudomonas putida W619 fatty acid hydroxylase YP_001751887.1 5568765 R 390235 CDS YP_001751888.1 170724200 6114036 5570174..5570839 1 NC_010501.1 PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN5340 enhancing lycopene biosynthesis protein 2; isoprenoid biosynthesis protein with amidotransferase-like domain 5570839 6114036 PputW619_5043 Pseudomonas putida W619 isoprenoid biosynthesis protein with amidotransferase-like domain YP_001751888.1 5570174 D 390235 CDS YP_001751889.1 170724201 6114037 complement(5570840..5571292) 1 NC_010501.1 PFAM: protein of unknown function DUF188; KEGG: pen:PSEEN5341 hypothetical protein; hypothetical protein 5571292 6114037 PputW619_5044 Pseudomonas putida W619 hypothetical protein YP_001751889.1 5570840 R 390235 CDS YP_001751890.1 170724202 6114038 complement(5571464..5571712) 1 NC_010501.1 KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein 5571712 6114038 PputW619_5045 Pseudomonas putida W619 hypothetical protein YP_001751890.1 5571464 R 390235 CDS YP_001751891.1 170724203 6114039 complement(5571709..5571972) 1 NC_010501.1 KEGG: pen:PSEEN5348 hypothetical protein; hypothetical protein 5571972 6114039 PputW619_5046 Pseudomonas putida W619 hypothetical protein YP_001751891.1 5571709 R 390235 CDS YP_001751892.1 170724204 6114040 5572497..5572952 1 NC_010501.1 PFAM: protein of unknown function DUF1568; KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein 5572952 6114040 PputW619_5047 Pseudomonas putida W619 hypothetical protein YP_001751892.1 5572497 D 390235 CDS YP_001751893.1 170724205 6114041 complement(5573000..5574418) 1 NC_010501.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0156 efflux transporter, outer membrane protein; RND efflux system outer membrane lipoprotein 5574418 6114041 PputW619_5048 Pseudomonas putida W619 RND efflux system outer membrane lipoprotein YP_001751893.1 5573000 R 390235 CDS YP_001751894.1 170724206 6114042 complement(5574415..5575290) 1 NC_010501.1 PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0155 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 5575290 6114042 PputW619_5049 Pseudomonas putida W619 secretion protein HlyD family protein YP_001751894.1 5574415 R 390235 CDS YP_001751895.1 170724207 6114043 complement(5575287..5575499) 1 NC_010501.1 PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN0154 hypothetical protein; hypothetical protein 5575499 6114043 PputW619_5050 Pseudomonas putida W619 hypothetical protein YP_001751895.1 5575287 R 390235 CDS YP_001751896.1 170724208 6114044 complement(5575496..5577583) 1 NC_010501.1 PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN0153 efflux transporter, permease protein; fusaric acid resistance protein region 5577583 6114044 PputW619_5051 Pseudomonas putida W619 fusaric acid resistance protein region YP_001751896.1 5575496 R 390235 CDS YP_001751897.1 170724209 6114045 complement(5577580..5578032) 1 NC_010501.1 PFAM: regulatory protein MarR; KEGG: pen:PSEEN0152 transcriptional activator, MarR family; MarR family transcriptional regulator 5578032 6114045 PputW619_5052 Pseudomonas putida W619 MarR family transcriptional regulator YP_001751897.1 5577580 R 390235 CDS YP_001751898.1 170724210 6114046 complement(5578133..5578930) 1 NC_010501.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN0151 hypothetical protein; Sel1 domain-containing protein 5578930 6114046 PputW619_5053 Pseudomonas putida W619 Sel1 domain-containing protein YP_001751898.1 5578133 R 390235 CDS YP_001751899.1 170724211 6114047 5579137..5579694 1 NC_010501.1 KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein 5579694 6114047 PputW619_5054 Pseudomonas putida W619 transcriptional factor-like protein YP_001751899.1 5579137 D 390235 CDS YP_001751900.1 170724212 6114048 complement(5579709..5580572) 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0149 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5580572 6114048 PputW619_5055 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751900.1 5579709 R 390235 CDS YP_001751901.1 170724213 6114049 complement(5580587..5581450) 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0148 ABC transporter, ATP-binding protein; ABC transporter-like protein 5581450 6114049 PputW619_5056 Pseudomonas putida W619 ABC transporter-like protein YP_001751901.1 5580587 R 390235 CDS YP_001751902.1 170724214 6114050 complement(5581457..5582476) 1 NC_010501.1 KEGG: pen:PSEEN0147 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein 5582476 6114050 PputW619_5057 Pseudomonas putida W619 ABC transporter substrate-binding protein YP_001751902.1 5581457 R 390235 CDS YP_001751903.1 170724215 6114051 complement(5582494..5583393) 1 NC_010501.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0146 taurine catabolic dioxygenase; taurine dioxygenase 5583393 6114051 PputW619_5058 Pseudomonas putida W619 taurine dioxygenase YP_001751903.1 5582494 R 390235 CDS YP_001751904.1 170724216 6114052 complement(5583611..5584012) 1 NC_010501.1 KEGG: pen:PSEEN0140 hypothetical protein; hypothetical protein 5584012 6114052 PputW619_5059 Pseudomonas putida W619 hypothetical protein YP_001751904.1 5583611 R 390235 CDS YP_001751905.1 170724217 6114053 complement(5584109..5601997) 1 NC_010501.1 PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Na-Ca exchanger/integrin-beta4; KEGG: pfo:Pfl_0133 von Willebrand factor, type A; Na-Ca exchanger/integrin-beta4 5601997 6114053 PputW619_5060 Pseudomonas putida W619 Na-Ca exchanger/integrin-beta4 YP_001751905.1 5584109 R 390235 CDS YP_001751906.1 170724218 6114054 5602348..5603685 1 NC_010501.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0143 type I toxin efflux outer membrane protein TolC; TolC family type I secretion outer membrane protein 5603685 6114054 PputW619_5061 Pseudomonas putida W619 TolC family type I secretion outer membrane protein YP_001751906.1 5602348 D 390235 CDS YP_001751907.1 170724219 6114055 5603730..5605886 1 NC_010501.1 KEGG: pen:PSEEN0144 type I toxin efflux ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 5605886 6114055 PputW619_5062 Pseudomonas putida W619 type I secretion system ATPase YP_001751907.1 5603730 D 390235 CDS YP_001751908.1 170724220 6114056 5605876..5607252 1 NC_010501.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0145 type I toxin efflux membrane fusion protein; HlyD family type I secretion membrane fusion protein 5607252 6114056 PputW619_5063 Pseudomonas putida W619 HlyD family type I secretion membrane fusion protein YP_001751908.1 5605876 D 390235 CDS YP_001751909.1 170724221 6114057 complement(5607311..5609257) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0139 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase 5609257 6114057 PputW619_5064 Pseudomonas putida W619 diguanylate cyclase/phosphodiesterase YP_001751909.1 5607311 R 390235 CDS YP_001751910.1 170724222 6114058 complement(5609268..5610023) 1 NC_010501.1 KEGG: pen:PSEEN0138 hypothetical protein; hypothetical protein 5610023 6114058 PputW619_5065 Pseudomonas putida W619 hypothetical protein YP_001751910.1 5609268 R 390235 CDS YP_001751911.1 170724223 6114059 5610235..5610933 1 NC_010501.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0137 transcriptional regulator, GntR family; GntR family transcriptional regulator 5610933 6114059 PputW619_5066 Pseudomonas putida W619 GntR family transcriptional regulator YP_001751911.1 5610235 D 390235 CDS YP_001751912.1 170724224 6114069 complement(5622370..5623590) 1 NC_010501.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN0121 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 5623590 6114069 PputW619_5067 Pseudomonas putida W619 L-carnitine dehydratase/bile acid-inducible protein F YP_001751912.1 5622370 R 390235 CDS YP_001751913.1 170724225 6114070 complement(5623605..5624786) 1 NC_010501.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0120 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 5624786 6114070 PputW619_5068 Pseudomonas putida W619 acyl-CoA dehydrogenase domain-containing protein YP_001751913.1 5623605 R 390235 CDS YP_001751914.1 170724226 6114071 5624949..5625857 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0118 transcriptional regulator, LysR family; LysR family transcriptional regulator 5625857 6114071 PputW619_5069 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751914.1 5624949 D 390235 CDS YP_001751915.1 170724227 6114072 5626269..5627390 1 NC_010501.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pen:PSEEN0116 proton-translocating NAD(P) transhydrogenase; NAD(P)(+) transhydrogenase 5627390 6114072 PputW619_5070 Pseudomonas putida W619 NAD(P)(+) transhydrogenase YP_001751915.1 5626269 D 390235 CDS YP_001751916.1 170724228 6114073 5627402..5627716 1 NC_010501.1 KEGG: pen:PSEEN0115 pyridine proton-translocating NAD(P) transhydrogenase; pyridine proton-translocating NAD(P) transhydrogenase 5627716 6114073 PputW619_5071 Pseudomonas putida W619 pyridine proton-translocating NAD(P) transhydrogenase YP_001751916.1 5627402 D 390235 CDS YP_001751917.1 170724229 6114074 5627725..5629155 1 NC_010501.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pen:PSEEN0114 pyridine nucleotide transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 5629155 6114074 PputW619_5072 Pseudomonas putida W619 NAD(P)(+) transhydrogenase YP_001751917.1 5627725 D 390235 CDS YP_001751918.1 170724230 6114075 5629344..5630837 1 NC_010501.1 KEGG: pen:PSEEN0113 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 5630837 6114075 PputW619_5073 Pseudomonas putida W619 succinate CoA transferase YP_001751918.1 5629344 D 390235 CDS YP_001751919.1 170724231 6114076 5631213..5631428 1 NC_010501.1 KEGG: pen:PSEEN0112 hypothetical protein; hypothetical protein 5631428 6114076 PputW619_5074 Pseudomonas putida W619 hypothetical protein YP_001751919.1 5631213 D 390235 CDS YP_001751920.1 170724232 6114077 5631746..5632063 1 NC_010501.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0111 hypothetical protein; hypothetical protein 5632063 6114077 PputW619_5075 Pseudomonas putida W619 hypothetical protein YP_001751920.1 5631746 D 390235 CDS YP_001751921.1 170724233 6114078 5632147..5632491 1 NC_010501.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0110 hypothetical protein; hypothetical protein 5632491 6114078 PputW619_5076 Pseudomonas putida W619 hypothetical protein YP_001751921.1 5632147 D 390235 CDS YP_001751922.1 170724234 6114079 5632476..5632796 1 NC_010501.1 TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0108 hypothetical protein; hypothetical protein 5632796 6114079 PputW619_5077 Pseudomonas putida W619 hypothetical protein YP_001751922.1 5632476 D 390235 CDS YP_001751923.1 170724235 6114080 5632793..5634751 1 NC_010501.1 KEGG: pen:PSEEN0107 hypothetical protein; hypothetical protein 5634751 6114080 PputW619_5078 Pseudomonas putida W619 hypothetical protein YP_001751923.1 5632793 D 390235 CDS YP_001751924.1 170724236 6114081 complement(5634812..5635213) 1 NC_010501.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN0106 hypothetical protein; glutathione-dependent formaldehyde-activating protein 5635213 6114081 PputW619_5079 Pseudomonas putida W619 glutathione-dependent formaldehyde-activating protein YP_001751924.1 5634812 R 390235 CDS YP_001751925.1 170724237 6114082 5635480..5636787 1 NC_010501.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN0104 citrate transporter; CitMHS family citrate/H+ symporter 5636787 6114082 PputW619_5080 Pseudomonas putida W619 CitMHS family citrate/H+ symporter YP_001751925.1 5635480 D 390235 CDS YP_001751926.1 170724238 6114083 5636861..5637631 1 NC_010501.1 PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN0103 efflux transporter, TerC family; integral membrane protein TerC 5637631 6114083 PputW619_5081 Pseudomonas putida W619 integral membrane protein TerC YP_001751926.1 5636861 D 390235 CDS YP_001751927.1 170724239 6114084 5637860..5639518 1 NC_010501.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pen:PSEEN0101 Na+/Pi cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 5639518 6114084 PputW619_5082 Pseudomonas putida W619 sodium-dependent inorganic phosphate (Pi) transporter YP_001751927.1 5637860 D 390235 CDS YP_001751928.1 170724240 6114085 5639549..5640955 1 NC_010501.1 PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0100 metalloprotease, M16 family; peptidase M16 domain-containing protein 5640955 6114085 PputW619_5083 Pseudomonas putida W619 peptidase M16 domain-containing protein YP_001751928.1 5639549 D 390235 CDS YP_001751929.1 170724241 6114086 5641046..5642068 1 NC_010501.1 KEGG: pen:PSEEN0099 hypothetical protein; hypothetical protein 5642068 6114086 PputW619_5084 Pseudomonas putida W619 hypothetical protein YP_001751929.1 5641046 D 390235 CDS YP_001751930.1 170724242 6114087 5642192..5643325 1 NC_010501.1 PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein; hypothetical protein 5643325 6114087 PputW619_5085 Pseudomonas putida W619 hypothetical protein YP_001751930.1 5642192 D 390235 CDS YP_001751931.1 170724243 6114088 5643322..5644113 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0097 ABC transporter, ATP-binding protein; ABC transporter-like protein 5644113 6114088 PputW619_5086 Pseudomonas putida W619 ABC transporter-like protein YP_001751931.1 5643322 D 390235 CDS YP_001751932.1 170724244 6114089 5644117..5645055 1 NC_010501.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein; hypothetical protein 5645055 6114089 PputW619_5087 Pseudomonas putida W619 hypothetical protein YP_001751932.1 5644117 D 390235 CDS YP_001751933.1 170724245 6114090 5645052..5645675 1 NC_010501.1 PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN0095 lipoprotein; hypothetical protein 5645675 6114090 PputW619_5088 Pseudomonas putida W619 hypothetical protein YP_001751933.1 5645052 D 390235 CDS YP_001751934.1 170724246 6114091 complement(5645657..5646886) 1 NC_010501.1 PFAM: nucleoside recognition domain protein; KEGG: pen:PSEEN0094 hypothetical protein; nucleoside recognition domain-containing protein 5646886 6114091 PputW619_5089 Pseudomonas putida W619 nucleoside recognition domain-containing protein YP_001751934.1 5645657 R 390235 CDS YP_001751935.1 170724247 6114092 complement(5647039..5648367) 1 NC_010501.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 5648367 gltP 6114092 gltP Pseudomonas putida W619 glutamate/aspartate:proton symporter YP_001751935.1 5647039 R 390235 CDS YP_001751936.1 170724248 6114093 complement(5649103..5649573) 1 NC_010501.1 PFAM: Inhibitor of vertebrate lysozyme; KEGG: pen:PSEEN0091 hypothetical protein; inhibitor of vertebrate lysozyme 5649573 6114093 PputW619_5091 Pseudomonas putida W619 inhibitor of vertebrate lysozyme YP_001751936.1 5649103 R 390235 CDS YP_001751937.1 170724249 6114094 complement(5649576..5649737) 1 NC_010501.1 PFAM: protein of unknown function DUF1328; KEGG: pen:PSEEN0090 hypothetical protein; hypothetical protein 5649737 6114094 PputW619_5092 Pseudomonas putida W619 hypothetical protein YP_001751937.1 5649576 R 390235 CDS YP_001751938.1 170724250 6114095 complement(5649795..5650079) 1 NC_010501.1 KEGG: pen:PSEEN0089 hypothetical protein; hypothetical protein 5650079 6114095 PputW619_5093 Pseudomonas putida W619 hypothetical protein YP_001751938.1 5649795 R 390235 CDS YP_001751939.1 170724251 6114096 complement(5650257..5651078) 1 NC_010501.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_0251 osmotically inducible protein, putative; transport-associated 5651078 6114096 PputW619_5094 Pseudomonas putida W619 transport-associated YP_001751939.1 5650257 R 390235 CDS YP_001751940.1 170724252 6114097 5651289..5652635 1 NC_010501.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0087 alginate biosynthesis response regulator AlgB; Fis family two component sigma-54 specific transcriptional regulator 5652635 6114097 PputW619_5095 Pseudomonas putida W619 Fis family two component sigma-54 specific transcriptional regulator YP_001751940.1 5651289 D 390235 CDS YP_001751941.1 170724253 6114098 5652632..5654410 1 NC_010501.1 KEGG: pen:PSEEN0086 alginate biosynthesis sensor protein KinB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 5654410 6114098 PputW619_5096 Pseudomonas putida W619 multi-sensor signal transduction histidine kinase YP_001751941.1 5652632 D 390235 CDS YP_001751942.1 170724254 6114099 complement(5654468..5656096) 1 NC_010501.1 PFAM: EAL domain protein; KEGG: pen:PSEEN0085 signal transduction protein; EAL domain protein; EAL domain-containing protein 5656096 6114099 PputW619_5097 Pseudomonas putida W619 EAL domain-containing protein YP_001751942.1 5654468 R 390235 CDS YP_001751943.1 170724255 6114100 complement(5656175..5656990) 1 NC_010501.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0084 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 5656990 6114100 PputW619_5098 Pseudomonas putida W619 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001751943.1 5656175 R 390235 CDS YP_001751944.1 170724256 6114101 complement(5657017..5658978) 1 NC_010501.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0083 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase 5658978 6114101 PputW619_5099 Pseudomonas putida W619 diguanylate cyclase YP_001751944.1 5657017 R 390235 CDS YP_001751945.1 170724257 6114102 complement(5659076..5659930) 1 NC_010501.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN0082 DNAse I-like hydrolase; endonuclease/exonuclease/phosphatase 5659930 6114102 PputW619_5100 Pseudomonas putida W619 endonuclease/exonuclease/phosphatase YP_001751945.1 5659076 R 390235 CDS YP_001751946.1 170724258 6114103 complement(5659942..5660577) 1 NC_010501.1 PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN0081 thiol:disulfide interchange protein, periplasmic, alkali-inducible; DSBA oxidoreductase 5660577 6114103 PputW619_5101 Pseudomonas putida W619 DSBA oxidoreductase YP_001751946.1 5659942 R 390235 CDS YP_001751947.1 170724259 6114104 complement(5660747..5661364) 1 NC_010501.1 PFAM: cytochrome c class I; KEGG: pen:PSEEN0080 cytochrome c4; cytochrome c class I 5661364 6114104 PputW619_5102 Pseudomonas putida W619 cytochrome c class I YP_001751947.1 5660747 R 390235 CDS YP_001751948.1 170724260 6114105 complement(5661396..5661698) 1 NC_010501.1 KEGG: pen:PSEEN0079 cytochrome c-type protein; cytochrome c-type protein 5661698 6114105 PputW619_5103 Pseudomonas putida W619 cytochrome c-type protein YP_001751948.1 5661396 R 390235 CDS YP_001751949.1 170724261 6114106 5661892..5662524 1 NC_010501.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 5662524 engB 6114106 engB Pseudomonas putida W619 ribosome biogenesis GTP-binding protein YsxC YP_001751949.1 5661892 D 390235 CDS YP_001751950.1 170724262 6114107 complement(5662893..5665640) 1 NC_010501.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 5665640 6114107 PputW619_5105 Pseudomonas putida W619 DNA polymerase I YP_001751950.1 5662893 R 390235 CDS YP_001751951.1 170724263 6114108 5665715..5666002 1 NC_010501.1 KEGG: pen:PSEEN0075 hypothetical protein; hypothetical protein 5666002 6114108 PputW619_5106 Pseudomonas putida W619 hypothetical protein YP_001751951.1 5665715 D 390235 CDS YP_001751952.1 170724264 6114109 5666072..5667022 1 NC_010501.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 5667022 6114109 PputW619_5107 Pseudomonas putida W619 homoserine kinase YP_001751952.1 5666072 D 390235 CDS YP_001751953.1 170724265 6114110 complement(5667174..5668082) 1 NC_010501.1 PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN0073 zinc ABC transporter ZnuA, periplasmic binding protein; periplasmic solute binding protein 5668082 6114110 PputW619_5108 Pseudomonas putida W619 periplasmic solute binding protein YP_001751953.1 5667174 R 390235 CDS YP_001751954.1 170724266 6114111 5668149..5668634 1 NC_010501.1 KEGG: pen:PSEEN0072 transcriptional repressor of Zn transport system Zur; ferric uptake regulator family protein 5668634 6114111 PputW619_5109 Pseudomonas putida W619 ferric uptake regulator family protein YP_001751954.1 5668149 D 390235 CDS YP_001751955.1 170724267 6114112 5668631..5669404 1 NC_010501.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0071 zinc ABC transporter, ATP-binding protein; ABC transporter-like protein 5669404 6114112 PputW619_5110 Pseudomonas putida W619 ABC transporter-like protein YP_001751955.1 5668631 D 390235 CDS YP_001751956.1 170724268 6114113 5669397..5670179 1 NC_010501.1 PFAM: ABC-3 protein; KEGG: pen:PSEEN0070 zinc ABC transporter, permease protein; ABC-3 protein 5670179 6114113 PputW619_5111 Pseudomonas putida W619 ABC-3 protein YP_001751956.1 5669397 D 390235 CDS YP_001751957.1 170724269 6114114 5670307..5671014 1 NC_010501.1 KEGG: pen:PSEEN0069 lipoprotein; lipoprotein 5671014 6114114 PputW619_5112 Pseudomonas putida W619 lipoprotein YP_001751957.1 5670307 D 390235 CDS YP_001751958.1 170724270 6114115 complement(5671067..5673211) 1 NC_010501.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 5673211 katE 6114115 katE Pseudomonas putida W619 hydroperoxidase II YP_001751958.1 5671067 R 390235 CDS YP_001751959.1 170724271 6114116 5673438..5674445 1 NC_010501.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 5674445 metN 6114116 metN Pseudomonas putida W619 DL-methionine transporter ATP-binding subunit YP_001751959.1 5673438 D 390235 CDS YP_001751960.1 170724272 6114117 5674445..5675116 1 NC_010501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0067 D-methionine ABC transporter MetI, membrane protein; binding-protein-dependent transport system inner membrane protein 5675116 6114117 PputW619_5115 Pseudomonas putida W619 binding-protein-dependent transport system inner membrane protein YP_001751960.1 5674445 D 390235 CDS YP_001751961.1 170724273 6114118 5675181..5675951 1 NC_010501.1 PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0066 D-methionine-binding lipoprotein MetQ; NLPA lipoprotein 5675951 6114118 PputW619_5116 Pseudomonas putida W619 NLPA lipoprotein YP_001751961.1 5675181 D 390235 CDS YP_001751962.1 170724274 6114119 complement(5676048..5677574) 1 NC_010501.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5491 transcriptional regulator, GntR family; transcriptional regulator 5677574 6114119 PputW619_5117 Pseudomonas putida W619 transcriptional regulator YP_001751962.1 5676048 R 390235 CDS YP_001751963.1 170724275 6114120 5677664..5678293 1 NC_010501.1 PFAM: Negative transcriptional regulator; KEGG: pen:PSEEN5492 transcriptional regulator; FMN-binding negative transcriptional regulator 5678293 6114120 PputW619_5118 Pseudomonas putida W619 FMN-binding negative transcriptional regulator YP_001751963.1 5677664 D 390235 CDS YP_001751964.1 170724276 6114121 5678306..5678752 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5493 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5678752 6114121 PputW619_5119 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001751964.1 5678306 D 390235 CDS YP_001751965.1 170724277 6114122 5678767..5679441 1 NC_010501.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5494 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5679441 6114122 PputW619_5120 Pseudomonas putida W619 N-acetyltransferase GCN5 YP_001751965.1 5678767 D 390235 CDS YP_001751966.1 170724278 6114123 complement(5679445..5680344) 1 NC_010501.1 PFAM: homocysteine S-methyltransferase; KEGG: psb:Psyr_0975 homocysteine S-methyltransferase; homocysteine S-methyltransferase 5680344 6114123 PputW619_5121 Pseudomonas putida W619 homocysteine S-methyltransferase YP_001751966.1 5679445 R 390235 CDS YP_001751967.1 170724279 6114124 5680451..5681272 1 NC_010501.1 PFAM: extracellular solute-binding protein family 3; KEGG: psp:PSPPH_1023 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5681272 6114124 PputW619_5122 Pseudomonas putida W619 extracellular solute-binding protein YP_001751967.1 5680451 D 390235 CDS YP_001751968.1 170724280 6114125 5681269..5682090 1 NC_010501.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_1022 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5682090 6114125 PputW619_5123 Pseudomonas putida W619 polar amino acid ABC transporter inner membrane subunit YP_001751968.1 5681269 D 390235 CDS YP_001751969.1 170724281 6114126 complement(5682234..5684042) 1 NC_010501.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 5684042 6114126 PputW619_5124 Pseudomonas putida W619 pyruvate carboxylase subunit B YP_001751969.1 5682234 R 390235 CDS YP_001751970.1 170724282 6114127 complement(5684141..5685556) 1 NC_010501.1 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A 5685556 6114127 PputW619_5125 Pseudomonas putida W619 pyruvate carboxylase subunit A YP_001751970.1 5684141 R 390235 CDS YP_001751971.1 170724283 6114128 5685747..5686709 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5497 transcriptional regulator, LysR family; LysR family transcriptional regulator 5686709 6114128 PputW619_5126 Pseudomonas putida W619 LysR family transcriptional regulator YP_001751971.1 5685747 D 390235 CDS YP_001751972.1 170724284 6114129 complement(5686983..5687849) 1 NC_010501.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN5499 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 5687849 6114129 PputW619_5127 Pseudomonas putida W619 RpiR family transcriptional regulator YP_001751972.1 5686983 R 390235 CDS YP_001751973.1 170724285 6114130 5687953..5689395 1 NC_010501.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 5689395 6114130 PputW619_5128 Pseudomonas putida W619 glucose-6-phosphate 1-dehydrogenase YP_001751973.1 5687953 D 390235 CDS YP_001751974.1 170724286 6114131 5689435..5689800 1 NC_010501.1 hypothetical protein 5689800 6114131 PputW619_5129 Pseudomonas putida W619 hypothetical protein YP_001751974.1 5689435 D 390235 CDS YP_001751975.1 170724287 6114132 5689936..5692125 1 NC_010501.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 5692125 uvrD 6114132 uvrD Pseudomonas putida W619 DNA-dependent helicase II YP_001751975.1 5689936 D 390235 CDS YP_001751976.1 170724288 6114133 5692246..5693100 1 NC_010501.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: pen:PSEEN5505 hypothetical protein; import inner membrane translocase subunit Tim44 5693100 6114133 PputW619_5131 Pseudomonas putida W619 import inner membrane translocase subunit Tim44 YP_001751976.1 5692246 D 390235 CDS YP_001751977.1 170724289 6114134 5693215..5693622 1 NC_010501.1 KEGG: pfo:Pfl_5647 hypothetical protein; hypothetical protein 5693622 6114134 PputW619_5132 Pseudomonas putida W619 hypothetical protein YP_001751977.1 5693215 D 390235 CDS YP_001751978.1 170724290 6114135 complement(5693714..5695474) 1 NC_010501.1 PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5507 sodium/proton antiporter; sodium/hydrogen exchanger 5695474 6114135 PputW619_5133 Pseudomonas putida W619 sodium/hydrogen exchanger YP_001751978.1 5693714 R 390235 CDS YP_001751979.1 170724291 6114136 5695796..5696281 1 NC_010501.1 PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5508 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 5696281 6114136 PputW619_5134 Pseudomonas putida W619 thioesterase superfamily protein YP_001751979.1 5695796 D 390235 CDS YP_001751980.1 170724292 6114137 complement(5696278..5697150) 1 NC_010501.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 5697150 6114137 PputW619_5135 Pseudomonas putida W619 pyridoxamine kinase YP_001751980.1 5696278 R 390235 CDS YP_001751981.1 170724293 6114138 5697271..5697663 1 NC_010501.1 KEGG: pen:PSEEN5510 hypothetical protein; hypothetical protein 5697663 6114138 PputW619_5136 Pseudomonas putida W619 hypothetical protein YP_001751981.1 5697271 D 390235 CDS YP_001751982.1 170724294 6114139 complement(5697664..5698635) 1 NC_010501.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5511 cobalamin synthesis protein, P47K family; cobalamin synthesis protein P47K 5698635 6114139 PputW619_5137 Pseudomonas putida W619 cobalamin synthesis protein P47K YP_001751982.1 5697664 R 390235 CDS YP_001751983.1 170724295 6114140 complement(5698675..5699301) 1 NC_010501.1 PFAM: Protein of unknown function DUF1826; KEGG: pen:PSEEN5512 hypothetical protein; hypothetical protein 5699301 6114140 PputW619_5138 Pseudomonas putida W619 hypothetical protein YP_001751983.1 5698675 R 390235 CDS YP_001751984.1 170724296 6114141 complement(5699298..5700506) 1 NC_010501.1 PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5513 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 5700506 6114141 PputW619_5139 Pseudomonas putida W619 cobalamin synthesis protein P47K YP_001751984.1 5699298 R 390235 CDS YP_001751985.1 170724297 6114142 5700618..5700998 1 NC_010501.1 KEGG: pen:PSEEN5514 hypothetical protein; hypothetical protein 5700998 6114142 PputW619_5140 Pseudomonas putida W619 hypothetical protein YP_001751985.1 5700618 D 390235 CDS YP_001751986.1 170724298 6114143 5701023..5701910 1 NC_010501.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 5701910 6114143 PputW619_5141 Pseudomonas putida W619 putative GTP cyclohydrolase YP_001751986.1 5701023 D 390235 CDS YP_001751987.1 170724299 6114144 complement(5701915..5702442) 1 NC_010501.1 KEGG: pen:PSEEN5516 hypothetical protein; hypothetical protein 5702442 6114144 PputW619_5142 Pseudomonas putida W619 hypothetical protein YP_001751987.1 5701915 R 390235 CDS YP_001751988.1 170724300 6114145 5702573..5704012 1 NC_010501.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 5704012 cls 6114145 cls Pseudomonas putida W619 cardiolipin synthetase YP_001751988.1 5702573 D 390235 CDS YP_001751989.1 170724301 6114146 complement(5704048..5705232) 1 NC_010501.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5518 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 5705232 6114146 PputW619_5144 Pseudomonas putida W619 cyclopropane-fatty-acyl-phospholipid synthase YP_001751989.1 5704048 R 390235 CDS YP_001751990.1 170724302 6114147 5705432..5706832 1 NC_010501.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 5706832 6114147 PputW619_5145 Pseudomonas putida W619 dihydrolipoamide dehydrogenase YP_001751990.1 5705432 D 390235 CDS YP_001751991.1 170724303 6114148 5707369..5707725 1 NC_010501.1 PFAM: regulatory protein ArsR; KEGG: psa:PST_2096 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator 5707725 6114148 PputW619_5146 Pseudomonas putida W619 ArsR family transcriptional regulator YP_001751991.1 5707369 D 390235 CDS YP_001751992.1 170724304 6114149 5707745..5708215 1 NC_010501.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pfl:PFL_2184 arsenate reductase; protein tyrosine phosphatase 5708215 6114149 PputW619_5147 Pseudomonas putida W619 protein tyrosine phosphatase YP_001751992.1 5707745 D 390235 CDS YP_001751993.1 170724305 6114150 5708234..5709295 1 NC_010501.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sal:Sala_2405 arsenical-resistance protein; arsenical-resistance protein 5709295 6114150 PputW619_5148 Pseudomonas putida W619 arsenical-resistance protein YP_001751993.1 5708234 D 390235 CDS YP_001751994.1 170724306 6114151 5709299..5710015 1 NC_010501.1 TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_1520 NADPH-dependent FMN reductase; arsenical resistance protein ArsH 5710015 6114151 PputW619_5149 Pseudomonas putida W619 arsenical resistance protein ArsH YP_001751994.1 5709299 D 390235 CDS YP_001751995.1 170724307 6114152 5710175..5711179 1 NC_010501.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 5711179 6114152 PputW619_5150 Pseudomonas putida W619 glyceraldehyde-3-phosphate dehydrogenase YP_001751995.1 5710175 D 390235 CDS YP_001751996.1 170724308 6114153 5711189..5712421 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1523 major facilitator superfamily MFS_1; major facilitator transporter 5712421 6114153 PputW619_5151 Pseudomonas putida W619 major facilitator transporter YP_001751996.1 5711189 D 390235 CDS YP_001751997.1 170724309 6114154 complement(5712479..5713387) 1 NC_010501.1 KEGG: pfo:Pfl_2772 hypothetical protein; hypothetical protein 5713387 6114154 PputW619_5152 Pseudomonas putida W619 hypothetical protein YP_001751997.1 5712479 R 390235 CDS YP_001751998.1 170724310 6114155 complement(5713505..5714812) 1 NC_010501.1 PFAM: sodium:dicarboxylate symporter; KEGG: pfo:Pfl_2773 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 5714812 6114155 PputW619_5153 Pseudomonas putida W619 sodium:dicarboxylate symporter YP_001751998.1 5713505 R 390235 CDS YP_001751999.1 170724311 6114156 complement(5714915..5716084) 1 NC_010501.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pst:PSPTO_4062 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing protein 5716084 6114156 PputW619_5154 Pseudomonas putida W619 mandelate racemase/muconate lactonizing protein YP_001751999.1 5714915 R 390235 CDS YP_001752000.1 170724312 6114157 5716184..5717077 1 NC_010501.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_4061 transcriptional regulator, LysR family; LysR family transcriptional regulator 5717077 6114157 PputW619_5155 Pseudomonas putida W619 LysR family transcriptional regulator YP_001752000.1 5716184 D 390235 CDS YP_001752001.1 170724313 6114158 complement(5717813..5718199) 1 NC_010501.1 KEGG: rso:RS03923 hypothetical protein; hypothetical protein 5718199 6114158 PputW619_5156 Pseudomonas putida W619 hypothetical protein YP_001752001.1 5717813 R 390235 CDS YP_001752002.1 170724314 6114159 complement(5718269..5719639) 1 NC_010501.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pen:PSEEN3029 chromate transporter; chromate transporter 5719639 6114159 PputW619_5157 Pseudomonas putida W619 chromate transporter YP_001752002.1 5718269 R 390235 CDS YP_001752003.1 170724315 6114160 complement(5719632..5720573) 1 NC_010501.1 KEGG: pmy:Pmen_2248 hypothetical protein; hypothetical protein 5720573 6114160 PputW619_5158 Pseudomonas putida W619 hypothetical protein YP_001752003.1 5719632 R 390235 CDS YP_001752004.1 170724316 6114161 5720764..5722068 1 NC_010501.1 PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_5611 major facilitator superfamily MFS_1; major facilitator transporter 5722068 6114161 PputW619_5159 Pseudomonas putida W619 major facilitator transporter YP_001752004.1 5720764 D 390235 CDS YP_001752005.1 170724317 6114162 complement(5722109..5722282) 1 NC_010501.1 PFAM: protein of unknown function DUF1289; KEGG: pfl:PFL_2415 hypothetical protein; hypothetical protein 5722282 6114162 PputW619_5160 Pseudomonas putida W619 hypothetical protein YP_001752005.1 5722109 R 390235 CDS YP_001752006.1 170724318 6114163 complement(5722352..5723293) 1 NC_010501.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: psb:Psyr_1506 cation efflux protein; cation diffusion facilitator family transporter 5723293 6114163 PputW619_5161 Pseudomonas putida W619 cation diffusion facilitator family transporter YP_001752006.1 5722352 R 390235 CDS YP_001752007.1 170724319 6114164 complement(5723290..5723565) 1 NC_010501.1 PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_1505 protein of unknown function DUF156; hypothetical protein 5723565 6114164 PputW619_5162 Pseudomonas putida W619 hypothetical protein YP_001752007.1 5723290 R 390235 CDS YP_001752008.1 170724320 6114165 complement(5723933..5724589) 1 NC_010501.1 KEGG: pmy:Pmen_2239 hypothetical protein; hypothetical protein 5724589 6114165 PputW619_5163 Pseudomonas putida W619 hypothetical protein YP_001752008.1 5723933 R 390235 CDS YP_001752009.1 170724321 6114166 complement(5724601..5725338) 1 NC_010501.1 KEGG: pmy:Pmen_2240 hypothetical protein; hypothetical protein 5725338 6114166 PputW619_5164 Pseudomonas putida W619 hypothetical protein YP_001752009.1 5724601 R 390235 CDS YP_001752010.1 170724322 6114167 5725851..5726159 1 NC_010501.1 PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156; hypothetical protein 5726159 6114167 PputW619_5165 Pseudomonas putida W619 hypothetical protein YP_001752010.1 5725851 D 390235 CDS YP_001752011.1 170724323 6114168 5726164..5726604 1 NC_010501.1 KEGG: psa:PST_1913 predicted membrane protein; membrane protein 5726604 6114168 PputW619_5166 Pseudomonas putida W619 membrane protein YP_001752011.1 5726164 D 390235 CDS YP_001752012.1 170724324 6114169 5726601..5727332 1 NC_010501.1 PFAM: TraX family protein; KEGG: pmy:Pmen_2245 TraX family protein; TraX family protein 5727332 6114169 PputW619_5167 Pseudomonas putida W619 TraX family protein YP_001752012.1 5726601 D 390235 CDS YP_001752013.1 170724325 6114170 complement(5727405..5727578) 1 NC_010501.1 KEGG: syx:SynWH7803_0901 staphylococcal nuclease homolog; hypothetical protein 5727578 6114170 PputW619_5168 Pseudomonas putida W619 hypothetical protein YP_001752013.1 5727405 R 390235 CDS YP_001752014.1 170724326 6114171 complement(5727820..5728824) 1 NC_010501.1 KEGG: par:Psyc_1264 hypothetical protein; hypothetical protein 5728824 6114171 PputW619_5169 Pseudomonas putida W619 hypothetical protein YP_001752014.1 5727820 R 390235 CDS YP_001752015.1 170724327 6114172 5729999..5731486 1 NC_010501.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: psa:PST_2873 probable sulfate transporter; sulfate transporter 5731486 6114172 PputW619_5170 Pseudomonas putida W619 sulfate transporter YP_001752015.1 5729999 D 390235 CDS YP_001752016.1 170724328 6114173 5731498..5732349 1 NC_010501.1 PFAM: UspA domain protein; KEGG: psa:PST_0155 UspA-related nucleotide-binding protein; UspA domain-containing protein 5732349 6114173 PputW619_5171 Pseudomonas putida W619 UspA domain-containing protein YP_001752016.1 5731498 D 390235 CDS YP_001752017.1 170724329 6114174 5732442..5732975 1 NC_010501.1 PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2666 NUDIX hydrolase; NUDIX hydrolase 5732975 6114174 PputW619_5172 Pseudomonas putida W619 NUDIX hydrolase YP_001752017.1 5732442 D 390235 CDS YP_001752018.1 170724330 6114175 complement(5733009..5734544) 1 NC_010501.1 PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase; transposase IS66 5734544 6114175 PputW619_5173 Pseudomonas putida W619 transposase IS66 YP_001752018.1 5733009 R 390235 CDS YP_001752019.1 170724331 6114176 complement(5734606..5734941) 1 NC_010501.1 PFAM: IS66 Orf2 family protein; KEGG: pau:PA14_59570 putative transposase; IS66 Orf2 family protein 5734941 6114176 PputW619_5174 Pseudomonas putida W619 IS66 Orf2 family protein YP_001752019.1 5734606 R 390235 CDS YP_001752020.1 170724332 6114177 complement(5734938..5735270) 1 NC_010501.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein 5735270 6114177 PputW619_5175 Pseudomonas putida W619 transposase IS3/IS911 family protein YP_001752020.1 5734938 R 390235 CDS YP_001752021.1 170724333 6114178 complement(5735449..5735586) 1 NC_010501.1 KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 5735586 6114178 PputW619_5176 Pseudomonas putida W619 hypothetical protein YP_001752021.1 5735449 R 390235 CDS YP_001752022.1 170724334 6114179 complement(5735656..5737062) 1 NC_010501.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 5737062 6114179 PputW619_5177 Pseudomonas putida W619 heavy metal sensor signal transduction histidine kinase YP_001752022.1 5735656 R 390235 CDS YP_001752023.1 170724335 6114180 complement(5737062..5737739) 1 NC_010501.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_2234 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 5737739 6114180 PputW619_5178 Pseudomonas putida W619 two component heavy metal response transcriptional regulator YP_001752023.1 5737062 R 390235 CDS YP_001752024.1 170724336 6114181 5737905..5738111 1 NC_010501.1 KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein 5738111 6114181 PputW619_5179 Pseudomonas putida W619 hypothetical protein YP_001752024.1 5737905 D 390235 CDS YP_001752025.1 170724337 6114182 5738293..5740110 1 NC_010501.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein 5740110 6114182 PputW619_5180 Pseudomonas putida W619 CopA family copper resistance protein YP_001752025.1 5738293 D 390235 CDS YP_001752026.1 170724338 6114183 5740125..5740448 1 NC_010501.1 KEGG: psa:PST_3382 hypothetical protein; hypothetical protein 5740448 6114183 PputW619_5181 Pseudomonas putida W619 hypothetical protein YP_001752026.1 5740125 D 390235 CDS YP_001752027.1 170724339 6114184 5740438..5741553 1 NC_010501.1 PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B 5741553 6114184 PputW619_5182 Pseudomonas putida W619 copper resistance B YP_001752027.1 5740438 D 390235 CDS YP_001752028.1 170724340 6114185 5741564..5742346 1 NC_010501.1 KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein 5742346 6114185 PputW619_5183 Pseudomonas putida W619 hypothetical protein YP_001752028.1 5741564 D 390235 CDS YP_001752029.1 170724341 6114186 5742336..5742791 1 NC_010501.1 PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein 5742791 6114186 PputW619_5184 Pseudomonas putida W619 hypothetical protein YP_001752029.1 5742336 D 390235 CDS YP_001752030.1 170724342 6114187 complement(5743223..5743555) 1 NC_010501.1 KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein 5743555 6114187 PputW619_5185 Pseudomonas putida W619 hypothetical protein YP_001752030.1 5743223 R 390235 CDS YP_001752031.1 170724343 6114188 complement(5743701..5744024) 1 NC_010501.1 KEGG: pst:PSPTO_0206 hypothetical protein; hypothetical protein 5744024 6114188 PputW619_5186 Pseudomonas putida W619 hypothetical protein YP_001752031.1 5743701 R 390235 CDS YP_001752032.1 170724344 6114190 5744925..5745410 1 NC_010501.1 KEGG: pap:PSPA7_3052 hypothetical protein; hypothetical protein 5745410 6114190 PputW619_5188 Pseudomonas putida W619 hypothetical protein YP_001752032.1 5744925 D 390235 CDS YP_001752033.1 170724345 6114191 5745512..5745736 1 NC_010501.1 KEGG: pap:PSPA7_3053 hypothetical protein; hypothetical protein 5745736 6114191 PputW619_5189 Pseudomonas putida W619 hypothetical protein YP_001752033.1 5745512 D 390235 CDS YP_001752034.1 170724346 6114192 complement(5745780..5746049) 1 NC_010501.1 hypothetical protein 5746049 6114192 PputW619_5190 Pseudomonas putida W619 hypothetical protein YP_001752034.1 5745780 R 390235 CDS YP_001752035.1 170724347 6114193 5746551..5747651 1 NC_010501.1 KEGG: har:HEAR3220 hypothetical protein; hypothetical protein 5747651 6114193 PputW619_5191 Pseudomonas putida W619 hypothetical protein YP_001752035.1 5746551 D 390235 CDS YP_001752036.1 170724348 6114194 complement(5747606..5749075) 1 NC_010501.1 KEGG: ava:Ava_3495 Tn7-like transposition protein D; hypothetical protein 5749075 6114194 PputW619_5192 Pseudomonas putida W619 hypothetical protein YP_001752036.1 5747606 R 390235 CDS YP_001752037.1 170724349 6114195 complement(5749100..5750503) 1 NC_010501.1 KEGG: pfo:Pfl_5723 Tn7-like transposition protein C; Tn7-like transposition protein C 5750503 6114195 PputW619_5193 Pseudomonas putida W619 Tn7-like transposition protein C YP_001752037.1 5749100 R 390235 CDS YP_001752038.1 170724350 6114196 complement(5750541..5752712) 1 NC_010501.1 KEGG: pfo:Pfl_5724 Tn7-like transposition protein B; Tn7-like transposition protein B 5752712 6114196 PputW619_5194 Pseudomonas putida W619 Tn7-like transposition protein B YP_001752038.1 5750541 R 390235 CDS YP_001752039.1 170724351 6114197 complement(5752705..5753604) 1 NC_010501.1 PFAM: TnsA endonuclease; KEGG: pfo:Pfl_5725 hypothetical protein; TnsA endonuclease 5753604 6114197 PputW619_5195 Pseudomonas putida W619 TnsA endonuclease YP_001752039.1 5752705 R 390235 CDS YP_001752040.1 170724352 6114198 complement(5753876..5755711) 1 NC_010501.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 5755711 6114198 PputW619_5196 Pseudomonas putida W619 glucosamine--fructose-6-phosphate aminotransferase YP_001752040.1 5753876 R 390235 CDS YP_001752041.1 170724353 6114199 complement(5755714..5756490) 1 NC_010501.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN5538 transcriptional repressor, DeoR family; DeoR family transcriptional regulator 5756490 6114199 PputW619_5197 Pseudomonas putida W619 DeoR family transcriptional regulator YP_001752041.1 5755714 R 390235 CDS YP_001752042.1 170724354 6114200 complement(5756703..5758025) 1 NC_010501.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: pen:PSEEN5540 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase 5758025 6114200 PputW619_5198 Pseudomonas putida W619 UDP-N-acetylglucosamine pyrophosphorylase YP_001752042.1 5756703 R 390235 CDS YP_001752043.1 170724355 6114201 complement(5758191..5758610) 1 NC_010501.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 5758610 atpC 6114201 atpC Pseudomonas putida W619 F0F1 ATP synthase subunit epsilon YP_001752043.1 5758191 R 390235 CDS YP_001752044.1 170724356 6114202 complement(5758655..5760031) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 5760031 6114202 PputW619_5200 Pseudomonas putida W619 F0F1 ATP synthase subunit beta YP_001752044.1 5758655 R 390235 CDS YP_001752045.1 170724357 6114203 complement(5760059..5760919) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 5760919 6114203 PputW619_5201 Pseudomonas putida W619 F0F1 ATP synthase subunit gamma YP_001752045.1 5760059 R 390235 CDS YP_001752046.1 170724358 6114204 complement(5760968..5762512) 1 NC_010501.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 5762512 6114204 PputW619_5202 Pseudomonas putida W619 F0F1 ATP synthase subunit alpha YP_001752046.1 5760968 R 390235 CDS YP_001752047.1 170724359 6114205 complement(5762534..5763070) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 5763070 6114205 PputW619_5203 Pseudomonas putida W619 F0F1 ATP synthase subunit delta YP_001752047.1 5762534 R 390235 CDS YP_001752048.1 170724360 6114206 complement(5763083..5763553) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 5763553 6114206 PputW619_5204 Pseudomonas putida W619 F0F1 ATP synthase subunit B YP_001752048.1 5763083 R 390235 CDS YP_001752049.1 170724361 6114207 complement(5763610..5763867) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 5763867 6114207 PputW619_5205 Pseudomonas putida W619 F0F1 ATP synthase subunit C YP_001752049.1 5763610 R 390235 CDS YP_001752050.1 170724362 6114208 complement(5764011..5764880) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 5764880 6114208 PputW619_5206 Pseudomonas putida W619 F0F1 ATP synthase subunit A YP_001752050.1 5764011 R 390235 CDS YP_001752051.1 170724363 6114209 complement(5764897..5765304) 1 NC_010501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 5765304 6114209 PputW619_5207 Pseudomonas putida W619 F0F1 ATP synthase subunit I YP_001752051.1 5764897 R 390235 CDS YP_001752052.1 170724364 6114210 complement(5765454..5766326) 1 NC_010501.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pen:PSEEN5551 chromosomal partitioning protein ParB; parB-like partition protein 5766326 6114210 PputW619_5208 Pseudomonas putida W619 parB-like partition protein YP_001752052.1 5765454 R 390235 CDS YP_001752053.1 170724365 6114211 complement(5766336..5767127) 1 NC_010501.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN5552 chromosome partitioning ATPase ParA; cobyrinic acid ac-diamide synthase 5767127 6114211 PputW619_5209 Pseudomonas putida W619 cobyrinic acid ac-diamide synthase YP_001752053.1 5766336 R 390235 CDS YP_001752054.1 170724366 6114212 complement(5767146..5767796) 1 NC_010501.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5767796 gidB 6114212 gidB Pseudomonas putida W619 16S rRNA methyltransferase GidB YP_001752054.1 5767146 R 390235 CDS YP_001752055.1 170724367 6114213 complement(5767793..5769685) 1 NC_010501.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5769685 6114213 PputW619_5211 Pseudomonas putida W619 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001752055.1 5767793 R 390235 CDS YP_001752056.1 170724368 6114214 complement(5770200..5771570) 1 NC_010501.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5771570 trmE 6114214 trmE Pseudomonas putida W619 tRNA modification GTPase TrmE YP_001752056.1 5770200 R 390235 CDS YP_001752057.1 170724369 6114215 complement(5771657..5773339) 1 NC_010501.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 5773339 6114215 PputW619_5213 Pseudomonas putida W619 putative inner membrane protein translocase component YidC YP_001752057.1 5771657 R 390235 CDS