-- dump date 20140620_013655 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 390235000001 SEQ_END SEQ_END NC_010501.1 5774330 5774330 DR NC_010501.1; contig end 5774330..5774330 Pseudomonas putida W619 YP_001746876.1 CDS dnaA NC_010501.1 386 1921 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 386..1921 Pseudomonas putida W619 6114217 YP_001746877.1 CDS PputW619_0002 NC_010501.1 1962 3065 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1962..3065 Pseudomonas putida W619 6109172 YP_001746878.1 CDS recF NC_010501.1 3081 4184 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3081..4184 Pseudomonas putida W619 6109173 YP_001746879.1 CDS gyrB NC_010501.1 4189 6609 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4189..6609 Pseudomonas putida W619 6109174 YP_001746880.1 CDS PputW619_0005 NC_010501.1 7447 8085 D KEGG: bur:Bcep18194_C6542 hypothetical protein; hypothetical protein 7447..8085 Pseudomonas putida W619 6109175 YP_001746881.1 CDS PputW619_0006 NC_010501.1 8066 10024 D PFAM: Integrase catalytic region; KEGG: bur:Bcep18194_C6543 hypothetical protein; integrase catalytic region 8066..10024 Pseudomonas putida W619 6109176 YP_001746882.1 CDS PputW619_0007 NC_010501.1 10021 10980 D SMART: AAA ATPase; KEGG: bur:Bcep18194_C6544 hypothetical protein; ATPase AAA 10021..10980 Pseudomonas putida W619 6109177 YP_001746883.1 CDS PputW619_0008 NC_010501.1 11056 12972 D KEGG: pst:PSPTO_0030 hypothetical protein; hypothetical protein 11056..12972 Pseudomonas putida W619 6109178 YP_001746884.1 CDS PputW619_0009 NC_010501.1 13029 13388 D KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein 13029..13388 Pseudomonas putida W619 6109179 YP_001746885.1 CDS PputW619_0010 NC_010501.1 13760 14092 D KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein 13760..14092 Pseudomonas putida W619 6109180 YP_001746886.1 CDS PputW619_0011 NC_010501.1 14190 14645 R PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein complement(14190..14645) Pseudomonas putida W619 6109181 YP_001746887.1 CDS PputW619_0012 NC_010501.1 14635 15414 R KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein complement(14635..15414) Pseudomonas putida W619 6109182 YP_001746888.1 CDS PputW619_0013 NC_010501.1 15424 16539 R PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B complement(15424..16539) Pseudomonas putida W619 6109183 YP_001746889.1 CDS PputW619_0014 NC_010501.1 16529 16870 R KEGG: psa:PST_3382 hypothetical protein; hypothetical protein complement(16529..16870) Pseudomonas putida W619 6109184 YP_001746890.1 CDS PputW619_0015 NC_010501.1 16867 18825 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein complement(16867..18825) Pseudomonas putida W619 6109185 YP_001746891.1 CDS PputW619_0016 NC_010501.1 19008 19214 R KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein complement(19008..19214) Pseudomonas putida W619 6109186 YP_001746892.1 CDS PputW619_0017 NC_010501.1 19381 20058 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psa:PST_3390 transcriptional activator CopR; two component heavy metal response transcriptional regulator 19381..20058 Pseudomonas putida W619 6109187 YP_001746893.1 CDS PputW619_0018 NC_010501.1 20058 21464 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 20058..21464 Pseudomonas putida W619 6109188 YP_001746894.1 CDS PputW619_0019 NC_010501.1 21564 21848 D KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein 21564..21848 Pseudomonas putida W619 6109189 YP_001746895.1 CDS PputW619_0020 NC_010501.1 21935 23188 D PFAM: outer membrane efflux protein; KEGG: pap:PSPA7_4013 heavy metal RND efflux outer membrane protein, CzcC family; outer membrane efflux protein 21935..23188 Pseudomonas putida W619 6109190 YP_001746896.1 CDS PputW619_0021 NC_010501.1 23185 24651 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pap:PSPA7_4014 heavy metal RND efflux membrane fusion protein, CzcB family; RND family efflux transporter MFP subunit 23185..24651 Pseudomonas putida W619 6109191 YP_001746897.1 CDS PputW619_0022 NC_010501.1 24648 27806 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pap:PSPA7_4015 heavy metal efflux pump, CzcA family; CzcA family heavy metal efflux protein 24648..27806 Pseudomonas putida W619 6109192 YP_001746898.1 CDS PputW619_0023 NC_010501.1 27803 28150 D KEGG: pap:PSPA7_4016 heavy metal efflux system protein, putative; hypothetical protein 27803..28150 Pseudomonas putida W619 6109193 YP_001746899.1 CDS PputW619_0024 NC_010501.1 28565 29224 R KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(28565..29224) Pseudomonas putida W619 6109194 YP_001746900.1 CDS PputW619_0025 NC_010501.1 29221 29496 R KEGG: ajs:Ajs_1465 hypothetical protein; hypothetical protein complement(29221..29496) Pseudomonas putida W619 6109195 YP_001746901.1 CDS PputW619_0026 NC_010501.1 29522 29977 R KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein complement(29522..29977) Pseudomonas putida W619 6109196 YP_001746902.1 CDS PputW619_0027 NC_010501.1 30116 31138 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: net:Neut_0066 40-residue YVTN family beta-propeller repeat protein; hypothetical protein complement(30116..31138) Pseudomonas putida W619 6109197 YP_001746903.1 CDS PputW619_0028 NC_010501.1 31404 31595 R PFAM: Heavy metal transport/detoxification protein; KEGG: pmy:Pmen_2225 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(31404..31595) Pseudomonas putida W619 6109198 YP_001746904.1 CDS PputW619_0029 NC_010501.1 31942 34329 R KEGG: pmy:Pmen_2229 copper-translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase complement(31942..34329) Pseudomonas putida W619 6109199 YP_001746905.1 CDS PputW619_0030 NC_010501.1 34741 34947 D KEGG: pap:PSPA7_3842 probable transcriptional regulator; putative transcriptional regulator 34741..34947 Pseudomonas putida W619 6109200 YP_001746906.1 CDS PputW619_0031 NC_010501.1 35679 36488 D KEGG: rso:RSc1705 hypothetical protein; hypothetical protein 35679..36488 Pseudomonas putida W619 6109201 YP_001746907.1 CDS PputW619_0032 NC_010501.1 36672 36977 R hypothetical protein complement(36672..36977) Pseudomonas putida W619 6109202 YP_001746908.1 CDS PputW619_0033 NC_010501.1 37235 38023 R PFAM: Silent information regulator protein Sir2; thiamine pyrophosphate protein central region; KEGG: pst:PSPTO_4675 transcriptional regulator, Sir2 family; silent information regulator protein Sir2 complement(37235..38023) Pseudomonas putida W619 6109203 YP_001746909.1 CDS PputW619_0034 NC_010501.1 38230 38886 D KEGG: eba:ebA2473 hypothetical gene; hypothetical protein 38230..38886 Pseudomonas putida W619 6109204 YP_001746910.1 CDS PputW619_0035 NC_010501.1 39299 39607 D KEGG: asa:ASA_P4G008 hypothetical protein; hypothetical protein 39299..39607 Pseudomonas putida W619 6109205 YP_001746911.1 CDS PputW619_0036 NC_010501.1 39630 40172 R KEGG: bpt:Bpet0213 transposition protein, TnsC-related protein; hypothetical protein complement(39630..40172) Pseudomonas putida W619 6109206 YP_001746912.1 CDS PputW619_0037 NC_010501.1 40313 41848 R PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase; transposase IS66 complement(40313..41848) Pseudomonas putida W619 6109207 YP_001746913.1 CDS PputW619_0038 NC_010501.1 41912 42247 R PFAM: IS66 Orf2 family protein; KEGG: pau:PA14_59570 putative transposase; IS66 Orf2 family protein complement(41912..42247) Pseudomonas putida W619 6109208 YP_001746914.1 CDS PputW619_0039 NC_010501.1 42244 42564 R PFAM: transposase IS3/IS911 family protein; KEGG: pau:PA14_59560 putative transposase; transposase IS3/IS911 family protein complement(42244..42564) Pseudomonas putida W619 6109209 YP_001746915.1 CDS PputW619_0040 NC_010501.1 42765 43496 D KEGG: pap:PSPA7_4526 hypothetical protein; hypothetical protein 42765..43496 Pseudomonas putida W619 6109210 YP_001746916.1 CDS PputW619_0041 NC_010501.1 44291 44419 R KEGG: sbn:Sbal195_4409 hypothetical protein; hypothetical protein complement(44291..44419) Pseudomonas putida W619 6109211 YP_001746917.1 CDS PputW619_0042 NC_010501.1 44542 46239 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pau:PA14_39020 hypothetical protein; hypothetical protein complement(44542..46239) Pseudomonas putida W619 6109212 YP_001746918.1 CDS PputW619_0043 NC_010501.1 47123 48028 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pfl:PFL_5222 cobalt/cadmium/zinc transporter, CDF family; cation diffusion facilitator family transporter 47123..48028 Pseudomonas putida W619 6109213 YP_001746919.1 CDS PputW619_0044 NC_010501.1 48186 48536 D KEGG: mms:mma_3055 hypothetical protein; hypothetical protein 48186..48536 Pseudomonas putida W619 6109214 YP_001746920.1 CDS PputW619_0045 NC_010501.1 48569 48895 R KEGG: psb:Psyr_4809 hypothetical protein; hypothetical protein complement(48569..48895) Pseudomonas putida W619 6109215 YP_001746921.1 CDS PputW619_0046 NC_010501.1 49585 50259 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_1174 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 49585..50259 Pseudomonas putida W619 6109216 YP_001746922.1 CDS PputW619_0047 NC_010501.1 50256 51674 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3148 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 50256..51674 Pseudomonas putida W619 6109217 YP_001746923.1 CDS PputW619_0048 NC_010501.1 51732 52319 R hypothetical protein complement(51732..52319) Pseudomonas putida W619 6109218 YP_001746924.1 CDS PputW619_0049 NC_010501.1 52586 52807 D hypothetical protein 52586..52807 Pseudomonas putida W619 6109219 YP_001746925.1 CDS PputW619_0050 NC_010501.1 52890 54344 R PFAM: glycosyl transferase family 39; KEGG: pap:PSPA7_5537 hypothetical protein; glycosyl transferase family protein complement(52890..54344) Pseudomonas putida W619 6109220 YP_001746926.1 CDS PputW619_0051 NC_010501.1 54338 55321 R PFAM: glycosyl transferase family 2; KEGG: vha:VIBHAR_02791 hypothetical protein; ribonuclease III complement(54338..55321) Pseudomonas putida W619 6109221 YP_001746927.1 CDS PputW619_0052 NC_010501.1 55287 55706 R PFAM: GtrA family protein; KEGG: sde:Sde_0136 hypothetical protein; GtrA family protein complement(55287..55706) Pseudomonas putida W619 6109222 YP_001746928.1 CDS PputW619_0053 NC_010501.1 55964 56932 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2828 transcriptional regulator, LysR family; LysR family transcriptional regulator 55964..56932 Pseudomonas putida W619 6109223 YP_001746929.1 CDS PputW619_0054 NC_010501.1 57143 58450 D PFAM: phosphate-selective porin O and P; KEGG: pau:PA14_21620 phosphate-specific outer membrane porin OprP precursor; phosphate-selective porin O and P 57143..58450 Pseudomonas putida W619 6109224 YP_001746930.1 CDS PputW619_0055 NC_010501.1 58470 58604 D hypothetical protein 58470..58604 Pseudomonas putida W619 6109225 YP_001746931.1 CDS PputW619_0056 NC_010501.1 58749 59774 D hypothetical protein 58749..59774 Pseudomonas putida W619 6109226 YP_001746932.1 CDS PputW619_0057 NC_010501.1 59902 60126 D hypothetical protein 59902..60126 Pseudomonas putida W619 6109227 YP_001746933.1 CDS PputW619_0058 NC_010501.1 60219 62216 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_4435 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(60219..62216) Pseudomonas putida W619 6109228 YP_001746934.1 CDS PputW619_0059 NC_010501.1 62419 62742 R KEGG: psp:PSPPH_4839 hypothetical protein; hypothetical protein complement(62419..62742) Pseudomonas putida W619 6109229 YP_001746935.1 CDS PputW619_0060 NC_010501.1 62905 66066 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2024 RND divalent metal cation efflux transporter CzcA; CzcA family heavy metal efflux protein complement(62905..66066) Pseudomonas putida W619 6109230 YP_001746936.1 CDS PputW619_0061 NC_010501.1 66091 67341 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2023 cobalt-zinc-cadmium resistance protein CzcB; RND family efflux transporter MFP subunit complement(66091..67341) Pseudomonas putida W619 6109231 YP_001746937.1 CDS PputW619_0062 NC_010501.1 67410 68681 R PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2022 cobalt-zinc-cadmium resistance protein CzcC; outer membrane efflux protein complement(67410..68681) Pseudomonas putida W619 6109232 YP_001746938.1 CDS PputW619_0063 NC_010501.1 69085 70428 D PFAM: outer membrane porin; KEGG: pen:PSEEN2340 porin, OprD family; outer membrane porin 69085..70428 Pseudomonas putida W619 6109233 YP_001746939.1 CDS PputW619_0064 NC_010501.1 70917 71591 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pfl:PFL_5221 DNA-binding heavy metal response regulator, putative; two component heavy metal response transcriptional regulator 70917..71591 Pseudomonas putida W619 6109234 YP_001746940.1 CDS PputW619_0065 NC_010501.1 71709 72032 D KEGG: yen:YE1651 hypothetical protein; hypothetical protein 71709..72032 Pseudomonas putida W619 6109235 YP_001746941.1 CDS PputW619_0066 NC_010501.1 72134 72661 R hypothetical protein complement(72134..72661) Pseudomonas putida W619 6109236 YP_001746942.1 CDS PputW619_0067 NC_010501.1 72851 74317 R KEGG: nwi:Nwi_0260 hypothetical protein; hypothetical protein complement(72851..74317) Pseudomonas putida W619 6109237 YP_001746943.1 CDS PputW619_0068 NC_010501.1 74330 74779 R hypothetical protein complement(74330..74779) Pseudomonas putida W619 6109238 YP_001746944.1 CDS PputW619_0069 NC_010501.1 75471 75896 R KEGG: bxe:Bxe_B1530 hypothetical protein; integral membrane protein-like protein complement(75471..75896) Pseudomonas putida W619 6109239 YP_001746945.1 CDS PputW619_0070 NC_010501.1 76031 77335 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN0005 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator complement(76031..77335) Pseudomonas putida W619 6109240 YP_001746946.1 CDS PputW619_0071 NC_010501.1 77559 78443 D PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0007 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 77559..78443 Pseudomonas putida W619 6109241 YP_001746947.1 CDS PputW619_0072 NC_010501.1 78483 79754 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0008 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 78483..79754 Pseudomonas putida W619 6109242 YP_001746948.1 CDS PputW619_0073 NC_010501.1 79751 80569 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein; hypothetical protein 79751..80569 Pseudomonas putida W619 6109243 YP_001746949.1 CDS PputW619_0074 NC_010501.1 80558 81445 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0010 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(80558..81445) Pseudomonas putida W619 6109244 YP_001746950.1 CDS PputW619_0075 NC_010501.1 81572 83218 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0012 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 81572..83218 Pseudomonas putida W619 6109245 YP_001746951.1 CDS PputW619_0076 NC_010501.1 83316 84935 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN0013 major facilitator family transporter; general substrate transporter 83316..84935 Pseudomonas putida W619 6109246 YP_001746952.1 CDS PputW619_0077 NC_010501.1 85113 85883 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0014 N-acylhomoserine lactone synthase; phospholipid/glycerol acyltransferase complement(85113..85883) Pseudomonas putida W619 6109247 YP_001746953.1 CDS PputW619_0078 NC_010501.1 85944 86471 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(85944..86471) Pseudomonas putida W619 6109248 YP_001746954.1 CDS glyS NC_010501.1 86475 88526 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(86475..88526) Pseudomonas putida W619 6109249 YP_001746955.1 CDS glyQ NC_010501.1 88523 89470 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(88523..89470) Pseudomonas putida W619 6109250 YP_001746956.1 CDS PputW619_0081 NC_010501.1 89554 90105 D KEGG: pen:PSEEN0018 3-methyl-adenine DNA glycosylase I, constitutive; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 89554..90105 Pseudomonas putida W619 6109251 YP_001746957.1 CDS PputW619_0082 NC_010501.1 90147 91034 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 90147..91034 Pseudomonas putida W619 6109252 YP_001746958.1 CDS PputW619_0083 NC_010501.1 91151 91459 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0021 hypothetical protein; hypothetical protein complement(91151..91459) Pseudomonas putida W619 6109253 YP_001746959.1 CDS trkA NC_010501.1 91471 92844 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(91471..92844) Pseudomonas putida W619 6109254 YP_001746960.1 CDS PputW619_0085 NC_010501.1 92867 94177 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pen:PSEEN0023 ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase); sun protein complement(92867..94177) Pseudomonas putida W619 6109255 YP_001746961.1 CDS fmt NC_010501.1 94174 95106 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(94174..95106) Pseudomonas putida W619 6109256 YP_001746962.1 CDS def NC_010501.1 95166 95672 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(95166..95672) Pseudomonas putida W619 6109257 YP_001746963.1 CDS PputW619_0088 NC_010501.1 95879 96976 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pen:PSEEN0026 smf protein, DNA processing chain A; DNA protecting protein DprA 95879..96976 Pseudomonas putida W619 6109258 YP_001746964.1 CDS PputW619_0089 NC_010501.1 97015 97572 D PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN0027 hypothetical protein; SUA5/yciO/yrdC domain-containing protein 97015..97572 Pseudomonas putida W619 6109259 YP_001746965.1 CDS PputW619_0090 NC_010501.1 97956 98258 D KEGG: pen:PSEEN0028 hypothetical protein; hypothetical protein 97956..98258 Pseudomonas putida W619 6109260 YP_001746966.1 CDS PputW619_0091 NC_010501.1 98366 99343 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0029 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase complement(98366..99343) Pseudomonas putida W619 6109261 YP_001746967.1 CDS PputW619_0092 NC_010501.1 99478 100389 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 99478..100389 Pseudomonas putida W619 6109262 YP_001746968.1 CDS aroE NC_010501.1 100415 101239 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 100415..101239 Pseudomonas putida W619 6109263 YP_001746969.1 CDS PputW619_0094 NC_010501.1 101331 102896 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0032 sulfate transporter; sulfate transporter complement(101331..102896) Pseudomonas putida W619 6109264 YP_001746970.1 CDS PputW619_0095 NC_010501.1 103050 103973 R TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN0033 glycine betaine-binding protein; choline ABC transporter periplasmic binding protein complement(103050..103973) Pseudomonas putida W619 6109265 YP_001746971.1 CDS PputW619_0096 NC_010501.1 103988 105505 R TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: pen:PSEEN0034 choline sulfatase; choline-sulfatase complement(103988..105505) Pseudomonas putida W619 6109266 YP_001746972.1 CDS PputW619_0097 NC_010501.1 105615 106514 D TIGRFAM: choline sulfate-utilization transcription factor; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0035 transcriptional regulator, LysR family; LysR family transcriptional regulator 105615..106514 Pseudomonas putida W619 6109267 YP_001746973.1 CDS PputW619_0098 NC_010501.1 106608 107156 R KEGG: pfo:Pfl_0028 hypothetical protein; hypothetical protein complement(106608..107156) Pseudomonas putida W619 6109268 YP_001746974.1 CDS PputW619_0099 NC_010501.1 107210 107542 D PFAM: Dopa 45-dioxygenase; KEGG: pen:PSEEN0036 hypothetical protein; DOPA 45-dioxygenase 107210..107542 Pseudomonas putida W619 6109269 YP_001746975.1 CDS trpA NC_010501.1 107591 108400 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(107591..108400) Pseudomonas putida W619 6109270 YP_001746976.1 CDS PputW619_0101 NC_010501.1 108397 109614 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(108397..109614) Pseudomonas putida W619 6109271 YP_001746977.1 CDS PputW619_0102 NC_010501.1 109725 110621 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0039 transcriptional regulator TrpI; LysR family transcriptional regulator 109725..110621 Pseudomonas putida W619 6109272 YP_001746978.1 CDS PputW619_0103 NC_010501.1 110618 110941 R PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN0040 hypothetical protein; hypothetical protein complement(110618..110941) Pseudomonas putida W619 6109273 YP_001746979.1 CDS PputW619_0104 NC_010501.1 111092 111307 D PFAM: protein of unknown function DUF1458; KEGG: pen:PSEEN0041 hypothetical protein; hypothetical protein 111092..111307 Pseudomonas putida W619 6109274 YP_001746980.1 CDS PputW619_0105 NC_010501.1 111410 111631 D PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0042 hypothetical protein; hypothetical protein 111410..111631 Pseudomonas putida W619 6109275 YP_001746981.1 CDS PputW619_0106 NC_010501.1 111729 112733 R PFAM: luciferase family protein; KEGG: pen:PSEEN0043 luciferase-like monooxygenase; luciferase family protein complement(111729..112733) Pseudomonas putida W619 6109276 YP_001746982.1 CDS PputW619_0107 NC_010501.1 112888 113313 D PFAM: OsmC family protein; KEGG: pap:PSPA7_0059 osmotically inducible protein OsmC; OsmC family protein 112888..113313 Pseudomonas putida W619 6109277 YP_001746983.1 CDS PputW619_0108 NC_010501.1 113387 113617 D PFAM: protein of unknown function DUF1161; KEGG: pen:PSEEN0044 hypothetical protein; hypothetical protein 113387..113617 Pseudomonas putida W619 6109278 YP_001746984.1 CDS PputW619_0109 NC_010501.1 113657 114070 R KEGG: pen:PSEEN0045 lipoprotein; lipoprotein complement(113657..114070) Pseudomonas putida W619 6109279 YP_001746985.1 CDS PputW619_0110 NC_010501.1 114126 114539 R KEGG: pen:PSEEN0046 lipoprotein; lipoprotein complement(114126..114539) Pseudomonas putida W619 6109280 YP_001746986.1 CDS PputW619_0111 NC_010501.1 114606 115697 D KEGG: pen:PSEEN0047 hypothetical protein; hypothetical protein 114606..115697 Pseudomonas putida W619 6109281 YP_001746987.1 CDS PputW619_0112 NC_010501.1 115753 116427 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0048 hydrolase, HAD family; HAD family hydrolase complement(115753..116427) Pseudomonas putida W619 6109282 YP_001746988.1 CDS PputW619_0113 NC_010501.1 116424 116972 R KEGG: pen:PSEEN0049 transferase; transferase complement(116424..116972) Pseudomonas putida W619 6109283 YP_001746989.1 CDS PputW619_0114 NC_010501.1 117039 119126 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pen:PSEEN0050 oligopeptidase A; oligopeptidase A 117039..119126 Pseudomonas putida W619 6109284 YP_001746990.1 CDS PputW619_0115 NC_010501.1 119123 119404 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0051 hypothetical protein; hypothetical protein 119123..119404 Pseudomonas putida W619 6109285 YP_001746991.1 CDS PputW619_0116 NC_010501.1 119503 121497 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: pfo:Pfl_0088 oligopeptidase A; peptidase M3A and M3B thimet/oligopeptidase F 119503..121497 Pseudomonas putida W619 6109286 YP_001746992.1 CDS PputW619_0117 NC_010501.1 121563 122621 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN0052 hypothetical protein; radical SAM domain-containing protein 121563..122621 Pseudomonas putida W619 6109287 YP_001746993.1 CDS PputW619_0118 NC_010501.1 122893 123612 D PFAM: carbonic anhydrase; KEGG: pen:PSEEN0053 carbonic anhydrase; carbonate dehydratase 122893..123612 Pseudomonas putida W619 6109288 YP_001746994.1 CDS PputW619_0119 NC_010501.1 123805 125331 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN0054 sulfate transporter; sulfate transporter 123805..125331 Pseudomonas putida W619 6109289 YP_001746995.1 CDS PputW619_0120 NC_010501.1 125334 126422 R KEGG: gdi:GDI3666 hypothetical protein; hypothetical protein complement(125334..126422) Pseudomonas putida W619 6109290 YP_001746996.1 CDS PputW619_0121 NC_010501.1 126539 127180 R KEGG: pen:PSEEN0055 hypothetical protein; hypothetical protein complement(126539..127180) Pseudomonas putida W619 6109291 YP_001746997.1 CDS PputW619_0122 NC_010501.1 127550 128677 D TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; KEGG: pen:PSEEN0056 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 127550..128677 Pseudomonas putida W619 6109292 YP_001746998.1 CDS PputW619_0123 NC_010501.1 128721 130310 D KEGG: pen:PSEEN0057 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I 128721..130310 Pseudomonas putida W619 6109293 YP_001746999.1 CDS PputW619_0124 NC_010501.1 130321 130887 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 130321..130887 Pseudomonas putida W619 6109294 YP_001747000.1 CDS PputW619_0125 NC_010501.1 130904 131791 D PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0059 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 130904..131791 Pseudomonas putida W619 6109295 YP_001747001.1 CDS PputW619_0126 NC_010501.1 131927 132130 R KEGG: pen:PSEEN0060 hypothetical protein; hypothetical protein complement(131927..132130) Pseudomonas putida W619 6109296 YP_001747002.1 CDS PputW619_0127 NC_010501.1 132158 132922 D KEGG: pen:PSEEN0061 hypothetical protein; hypothetical protein 132158..132922 Pseudomonas putida W619 6109297 YP_001747003.1 CDS PputW619_0128 NC_010501.1 132888 133472 D KEGG: pen:PSEEN0062 hypothetical protein; hypothetical protein 132888..133472 Pseudomonas putida W619 6109298 YP_001747004.1 CDS PputW619_0129 NC_010501.1 133483 134556 D PFAM: cytochrome oxidase assembly; KEGG: pen:PSEEN0063 cytochrome oxidase assembly protein; cytochrome oxidase assembly 133483..134556 Pseudomonas putida W619 6109299 YP_001747005.1 CDS PputW619_0130 NC_010501.1 134541 135434 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 134541..135434 Pseudomonas putida W619 6108909 YP_001747006.1 CDS PputW619_0131 NC_010501.1 135431 136063 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN0065 electron transport protein, Sco1/SenC family; electron transport protein SCO1/SenC 135431..136063 Pseudomonas putida W619 6108910 YP_001747007.1 CDS PputW619_0132 NC_010501.1 136161 137264 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5489 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(136161..137264) Pseudomonas putida W619 6108911 YP_001747008.1 CDS PputW619_0133 NC_010501.1 137264 138307 R PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN5488 acetylpolyamine aminohydrolase; histone deacetylase superfamily protein complement(137264..138307) Pseudomonas putida W619 6108912 YP_001747009.1 CDS PputW619_0134 NC_010501.1 138419 139411 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN5487 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(138419..139411) Pseudomonas putida W619 6108913 YP_001747010.1 CDS aspA NC_010501.1 139568 141025 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(139568..141025) Pseudomonas putida W619 6108914 YP_001747011.1 CDS PputW619_0136 NC_010501.1 141175 142092 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5481 transcriptional regulator, LysR family; LysR family transcriptional regulator 141175..142092 Pseudomonas putida W619 6108915 YP_001747012.1 CDS PputW619_0137 NC_010501.1 142084 142704 R KEGG: pst:PSPTO_5497 hypothetical protein; hypothetical protein complement(142084..142704) Pseudomonas putida W619 6108916 YP_001747013.1 CDS PputW619_0138 NC_010501.1 142974 143465 D KEGG: pen:PSEEN5480 phosphoribosylaminoimidazole carboxylase, mutase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 142974..143465 Pseudomonas putida W619 6108917 YP_001747014.1 CDS PputW619_0139 NC_010501.1 143476 144558 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 143476..144558 Pseudomonas putida W619 6108918 YP_001747015.1 CDS PputW619_0140 NC_010501.1 144667 144912 D PFAM: Transglycosylase-associated protein; KEGG: pen:PSEEN5478 hypothetical protein; transglycosylase-associated protein 144667..144912 Pseudomonas putida W619 6108919 YP_001747016.1 CDS PputW619_0141 NC_010501.1 144961 145494 D KEGG: pen:PSEEN5477 hypothetical protein; hypothetical protein 144961..145494 Pseudomonas putida W619 6108920 YP_001747017.1 CDS PputW619_0142 NC_010501.1 145581 146477 R PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN5476 aldose 1-epimerase; aldose 1-epimerase complement(145581..146477) Pseudomonas putida W619 6108921 YP_001747018.1 CDS PputW619_0143 NC_010501.1 146549 146947 R PFAM: thioesterase superfamily protein; KEGG: pfo:Pfl_5617 thioesterase superfamily; thioesterase superfamily protein complement(146549..146947) Pseudomonas putida W619 6108922 YP_001747019.1 CDS PputW619_0144 NC_010501.1 147305 148594 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN5474 permease (MFS superfamily); major facilitator transporter 147305..148594 Pseudomonas putida W619 6108923 YP_001747020.1 CDS PputW619_0145 NC_010501.1 148760 149758 D TIGRFAM: phosphate binding protein; KEGG: pen:PSEEN5473 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate binding protein 148760..149758 Pseudomonas putida W619 6108924 YP_001747021.1 CDS PputW619_0146 NC_010501.1 149897 152185 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5472 phosphate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 149897..152185 Pseudomonas putida W619 6108925 YP_001747022.1 CDS PputW619_0147 NC_010501.1 152203 153873 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5471 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 152203..153873 Pseudomonas putida W619 6108926 YP_001747023.1 CDS PputW619_0148 NC_010501.1 153976 154809 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 153976..154809 Pseudomonas putida W619 6108927 YP_001747024.1 CDS PputW619_0149 NC_010501.1 154941 155711 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pen:PSEEN5469 transcriptional repressor for high affinity phosphate uptake; phosphate uptake regulator PhoU 154941..155711 Pseudomonas putida W619 6108928 YP_001747025.1 CDS PputW619_0150 NC_010501.1 155877 156779 D PFAM: response regulator receiver; KEGG: pen:PSEEN5468 response regulator; response regulator receiver protein 155877..156779 Pseudomonas putida W619 6108929 YP_001747026.1 CDS PputW619_0151 NC_010501.1 157005 157907 D PFAM: peptidase M23B; KEGG: pen:PSEEN5467 peptidase, M23/M37 family; peptidase M23B 157005..157907 Pseudomonas putida W619 6108930 YP_001747027.1 CDS PputW619_0152 NC_010501.1 157941 159281 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN5466 metal ion transporter; hypothetical protein complement(157941..159281) Pseudomonas putida W619 6108931 YP_001747028.1 CDS PputW619_0153 NC_010501.1 159398 160705 R KEGG: pen:PSEEN5465 phosphate regulon sensor protein PhoR; TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(159398..160705) Pseudomonas putida W619 6108932 YP_001747029.1 CDS PputW619_0154 NC_010501.1 160842 161531 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN5464 phosphate regulon transcriptional regulatory protein PhoB; two component transcriptional regulator complement(160842..161531) Pseudomonas putida W619 6108933 YP_001747030.1 CDS PputW619_0155 NC_010501.1 161706 162077 D PFAM: Secreted repeat of unknown function; KEGG: pen:PSEEN5463 hypothetical protein; hypothetical protein 161706..162077 Pseudomonas putida W619 6108934 YP_001747031.1 CDS ubiA NC_010501.1 162150 163040 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(162150..163040) Pseudomonas putida W619 6108935 YP_001747032.1 CDS PputW619_0157 NC_010501.1 163040 163597 R PFAM: Chorismate lyase; KEGG: pen:PSEEN5461 chorismate-pyruvate lyase; chorismate lyase complement(163040..163597) Pseudomonas putida W619 6108936 YP_001747033.1 CDS PputW619_0158 NC_010501.1 163729 163896 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pen:PSEEN5460 rubredoxin; rubredoxin-type Fe(Cys)4 protein 163729..163896 Pseudomonas putida W619 6108937 YP_001747034.1 CDS PputW619_0159 NC_010501.1 163931 165079 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5459 rubredoxin-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 163931..165079 Pseudomonas putida W619 6108938 YP_001747035.1 CDS PputW619_0160 NC_010501.1 165268 165567 D PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN5458 DNA-binding protein HU-alpha; histone family protein DNA-binding protein 165268..165567 Pseudomonas putida W619 6108939 YP_001747036.1 CDS PputW619_0161 NC_010501.1 165714 166091 D KEGG: pen:PSEEN5457 hypothetical protein; hypothetical protein 165714..166091 Pseudomonas putida W619 6108940 YP_001747037.1 CDS PputW619_0162 NC_010501.1 166124 167527 R PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN5456 hypothetical protein; putative signal transduction protein complement(166124..167527) Pseudomonas putida W619 6108941 YP_001747038.1 CDS PputW619_0163 NC_010501.1 167606 169684 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(167606..169684) Pseudomonas putida W619 6108942 YP_001747039.1 CDS PputW619_0164 NC_010501.1 169688 170614 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5454 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(169688..170614) Pseudomonas putida W619 6108943 YP_001747040.1 CDS PputW619_0165 NC_010501.1 170709 171443 R TIGRFAM: TonB family protein; KEGG: pen:PSEEN5453 ferric siderophore transport system, periplasmic binding protein TonB; TonB family protein complement(170709..171443) Pseudomonas putida W619 6108944 YP_001747041.1 CDS PputW619_0166 NC_010501.1 171440 171868 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD complement(171440..171868) Pseudomonas putida W619 6108945 YP_001747042.1 CDS PputW619_0167 NC_010501.1 171872 172843 R TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB; tonB-system energizer ExbB complement(171872..172843) Pseudomonas putida W619 6108946 YP_001747043.1 CDS PputW619_0168 NC_010501.1 173035 173892 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN5450 hypothetical protein; NAD-dependent epimerase/dehydratase 173035..173892 Pseudomonas putida W619 6108947 YP_001747044.1 CDS PputW619_0169 NC_010501.1 173967 174692 R KEGG: pen:PSEEN5449 lipoprotein; lipoprotein complement(173967..174692) Pseudomonas putida W619 6108948 YP_001747045.1 CDS PputW619_0170 NC_010501.1 174748 175128 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN5448 endoribonuclease L-PSP; endoribonuclease L-PSP complement(174748..175128) Pseudomonas putida W619 6108949 YP_001747046.1 CDS PputW619_0171 NC_010501.1 175152 177260 R KEGG: pen:PSEEN5447 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(175152..177260) Pseudomonas putida W619 6108950 YP_001747047.1 CDS rpoZ NC_010501.1 177320 177583 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(177320..177583) Pseudomonas putida W619 6108951 YP_001747048.1 CDS PputW619_0173 NC_010501.1 177787 178659 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5445 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(177787..178659) Pseudomonas putida W619 6108952 YP_001747049.1 CDS PputW619_0174 NC_010501.1 178865 180247 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5444 glutamine synthetase; glutamate--putrescine ligase 178865..180247 Pseudomonas putida W619 6108953 YP_001747050.1 CDS PputW619_0175 NC_010501.1 180252 181001 D PFAM: peptidase C26; KEGG: pen:PSEEN5443 glutamine amidotransferase; peptidase C26 180252..181001 Pseudomonas putida W619 6108954 YP_001747051.1 CDS PputW619_0176 NC_010501.1 181116 182654 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5442 amino acid transporter; amino acid permease-associated protein 181116..182654 Pseudomonas putida W619 6108955 YP_001747052.1 CDS gmk NC_010501.1 182745 183365 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(182745..183365) Pseudomonas putida W619 6108956 YP_001747053.1 CDS PputW619_0178 NC_010501.1 183379 184242 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pen:PSEEN5440 hypothetical protein; hypothetical protein complement(183379..184242) Pseudomonas putida W619 6108957 YP_001747054.1 CDS rph NC_010501.1 184470 185192 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 184470..185192 Pseudomonas putida W619 6108958 YP_001747055.1 CDS PputW619_0180 NC_010501.1 185254 186033 R TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN5437 catabolite repression control protein Crc; exodeoxyribonuclease III Xth complement(185254..186033) Pseudomonas putida W619 6108959 YP_001747056.1 CDS pyrE NC_010501.1 186114 186755 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 186114..186755 Pseudomonas putida W619 6108960 YP_001747057.1 CDS PputW619_0182 NC_010501.1 186836 187741 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(186836..187741) Pseudomonas putida W619 6108961 YP_001747058.1 CDS PputW619_0183 NC_010501.1 187772 189169 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pen:PSEEN5434 phosphomannomutase; phosphomannomutase complement(187772..189169) Pseudomonas putida W619 6108962 YP_001747059.1 CDS dut NC_010501.1 189281 189736 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(189281..189736) Pseudomonas putida W619 6108963 YP_001747060.1 CDS PputW619_0185 NC_010501.1 189742 190953 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(189742..190953) Pseudomonas putida W619 6108964 YP_001747061.1 CDS radC NC_010501.1 191084 191764 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 191084..191764 Pseudomonas putida W619 6108965 YP_001747062.1 CDS PputW619_0187 NC_010501.1 191835 193424 R PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN5430 periplasmic binding protein; extracellular solute-binding protein complement(191835..193424) Pseudomonas putida W619 6108966 YP_001747063.1 CDS rpmB NC_010501.1 193785 194021 D required for 70S ribosome assembly; 50S ribosomal protein L28 193785..194021 Pseudomonas putida W619 6108967 YP_001747064.1 CDS rpmG NC_010501.1 194032 194187 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 194032..194187 Pseudomonas putida W619 6108968 YP_001747065.1 CDS PputW619_0190 NC_010501.1 194310 194510 R hypothetical protein complement(194310..194510) Pseudomonas putida W619 6108969 YP_001747066.1 CDS PputW619_0191 NC_010501.1 194607 194966 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN5425 hypothetical protein; hypothetical protein complement(194607..194966) Pseudomonas putida W619 6108970 YP_001747067.1 CDS PputW619_0192 NC_010501.1 195163 196656 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN5424 aldehyde dehydrogenase; aldehyde dehydrogenase 195163..196656 Pseudomonas putida W619 6108971 YP_001747068.1 CDS PputW619_0193 NC_010501.1 196759 197898 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5423 major facilitator family transporter; major facilitator transporter 196759..197898 Pseudomonas putida W619 6108972 YP_001747069.1 CDS PputW619_0194 NC_010501.1 197908 199464 R PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN5422 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(197908..199464) Pseudomonas putida W619 6108973 YP_001747070.1 CDS PputW619_0195 NC_010501.1 199525 200955 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5421 transcriptional regulator, GntR family; transcriptional regulator complement(199525..200955) Pseudomonas putida W619 6108974 YP_001747071.1 CDS PputW619_0196 NC_010501.1 201134 201364 D KEGG: pen:PSEEN5420 hypothetical protein; hypothetical protein 201134..201364 Pseudomonas putida W619 6108975 YP_001747072.1 CDS PputW619_0197 NC_010501.1 201406 202698 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5419 oxidoreductase; D-amino acid dehydrogenase; FAD dependent oxidoreductase complement(201406..202698) Pseudomonas putida W619 6108976 YP_001747073.1 CDS PputW619_0198 NC_010501.1 202831 203184 D PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5418 hypothetical protein; hypothetical protein 202831..203184 Pseudomonas putida W619 6108977 YP_001747074.1 CDS PputW619_0199 NC_010501.1 203187 203675 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5417 leucine-responsive regulatory protein; AsnC family transcriptional regulator complement(203187..203675) Pseudomonas putida W619 6108978 YP_001747075.1 CDS PputW619_0200 NC_010501.1 203829 205130 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 203829..205130 Pseudomonas putida W619 6108979 YP_001747076.1 CDS dadX NC_010501.1 205252 206325 D catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 205252..206325 Pseudomonas putida W619 6108980 YP_001747077.1 CDS PputW619_0202 NC_010501.1 206436 206984 D PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN5414 transcriptional regulator; XRE family transcriptional regulator 206436..206984 Pseudomonas putida W619 6108981 YP_001747078.1 CDS PputW619_0203 NC_010501.1 207121 207543 D KEGG: pfo:Pfl_5522 cytochrome c5; cytochrome c5 207121..207543 Pseudomonas putida W619 6108982 YP_001747079.1 CDS PputW619_0204 NC_010501.1 207662 209521 D KEGG: pen:PSEEN5412 hypothetical protein; hypothetical protein 207662..209521 Pseudomonas putida W619 6108983 YP_001747080.1 CDS PputW619_0205 NC_010501.1 209636 210208 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(209636..210208) Pseudomonas putida W619 6108984 YP_001747081.1 CDS PputW619_0206 NC_010501.1 210272 212281 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN5410 ATP-dependent DNA helicase; ATP-dependent DNA helicase Rep complement(210272..212281) Pseudomonas putida W619 6108985 YP_001747082.1 CDS PputW619_0207 NC_010501.1 212579 214243 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN5409 diguanylate cyclase (GGDEF domain); diguanylate cyclase/phosphodiesterase 212579..214243 Pseudomonas putida W619 6108986 YP_001747083.1 CDS PputW619_0208 NC_010501.1 214320 215708 R functions as a Na(+)/drug antiporter; multidrug efflux protein NorA complement(214320..215708) Pseudomonas putida W619 6108987 YP_001747084.1 CDS PputW619_0209 NC_010501.1 215859 216785 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5407 transcriptional regulator, LysR family; LysR family transcriptional regulator 215859..216785 Pseudomonas putida W619 6108988 YP_001747085.1 CDS PputW619_0210 NC_010501.1 217004 218902 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5406 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 217004..218902 Pseudomonas putida W619 6108989 YP_001747086.1 CDS PputW619_0211 NC_010501.1 218990 220384 R PFAM: protein of unknown function DUF1338; KEGG: pen:PSEEN5405 hypothetical protein; hypothetical protein complement(218990..220384) Pseudomonas putida W619 6108990 YP_001747087.1 CDS PputW619_0212 NC_010501.1 220576 221466 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5404 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(220576..221466) Pseudomonas putida W619 6108991 YP_001747088.1 CDS PputW619_0213 NC_010501.1 221602 223092 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN5402 probable aldehyde dehydrogenase; aldehyde dehydrogenase 221602..223092 Pseudomonas putida W619 6108992 YP_001747089.1 CDS PputW619_0214 NC_010501.1 223233 224519 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5401 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 223233..224519 Pseudomonas putida W619 6108993 YP_001747090.1 CDS PputW619_0215 NC_010501.1 224681 224923 R KEGG: pen:PSEEN5400 small-conductance mechanosensitive channel; hypothetical protein complement(224681..224923) Pseudomonas putida W619 6108994 YP_001747091.1 CDS PputW619_0216 NC_010501.1 225019 225642 R KEGG: hch:HCH_04153 permease of the major facilitator superfamily; hypothetical protein complement(225019..225642) Pseudomonas putida W619 6108995 YP_001747092.1 CDS PputW619_0217 NC_010501.1 226029 227426 R KEGG: pfo:Pfl_5213 hypothetical protein; hypothetical protein complement(226029..227426) Pseudomonas putida W619 6108996 YP_001747093.1 CDS PputW619_0218 NC_010501.1 227732 228361 D PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN5397 isochorismatase; isochorismatase hydrolase 227732..228361 Pseudomonas putida W619 6108997 YP_001747094.1 CDS PputW619_0219 NC_010501.1 228477 229043 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN5396 hypothetical protein; antibiotic biosynthesis monooxygenase 228477..229043 Pseudomonas putida W619 6108998 YP_001747095.1 CDS PputW619_0220 NC_010501.1 229082 229900 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5395 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 229082..229900 Pseudomonas putida W619 6108999 YP_001747096.1 CDS PputW619_0221 NC_010501.1 230135 232117 D PFAM: Amidohydrolase 3; KEGG: pen:PSEEN5394 puttaive metal-dependent hydrolase; amidohydrolase family; amidohydrolase 3 230135..232117 Pseudomonas putida W619 6109000 YP_001747097.1 CDS PputW619_0222 NC_010501.1 232277 232549 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(232277..232549) Pseudomonas putida W619 6109001 YP_001747098.1 CDS PputW619_0223 NC_010501.1 232554 232823 R KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein complement(232554..232823) Pseudomonas putida W619 6109002 YP_001747099.1 CDS PputW619_0224 NC_010501.1 233186 234448 R PFAM: outer membrane porin; KEGG: pfo:Pfl_2708 outer membrane porin; outer membrane porin complement(233186..234448) Pseudomonas putida W619 6109003 YP_001747100.1 CDS PputW619_0225 NC_010501.1 234567 235478 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5393 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(234567..235478) Pseudomonas putida W619 6109004 YP_001747101.1 CDS PputW619_0226 NC_010501.1 235595 237382 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pen:PSEEN5389 glutathione-regulated potassium-proton antiporter; potassium efflux system protein complement(235595..237382) Pseudomonas putida W619 6109005 YP_001747102.1 CDS PputW619_0227 NC_010501.1 237545 238519 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_1956 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(237545..238519) Pseudomonas putida W619 6109006 YP_001747103.1 CDS PputW619_0228 NC_010501.1 238698 239069 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_1960 transcriptional regulator, AraC family; AraC family transcriptional regulator 238698..239069 Pseudomonas putida W619 6109007 YP_001747104.1 CDS PputW619_0229 NC_010501.1 239143 239769 D PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_2298 isochorismatase hydrolase; isochorismatase hydrolase 239143..239769 Pseudomonas putida W619 6109008 YP_001747105.1 CDS PputW619_0230 NC_010501.1 239829 244886 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: serine/threonine protein kinase; KEGG: rme:Rmet_5309 ATP-binding region, ATPase-like protein; ATPase domain-containing protein complement(239829..244886) Pseudomonas putida W619 6109009 YP_001747106.1 CDS PputW619_0231 NC_010501.1 245128 246120 D PFAM: regulatory protein LuxR; response regulator receiver; transcriptional regulator domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rpa:RPA2109 two-component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 245128..246120 Pseudomonas putida W619 6109010 YP_001747107.1 CDS PputW619_0232 NC_010501.1 246117 246491 D PFAM: response regulator receiver; KEGG: pfo:Pfl_2250 response regulator receiver domain protein (CheY); response regulator receiver protein 246117..246491 Pseudomonas putida W619 6109011 YP_001747108.1 CDS PputW619_0233 NC_010501.1 246695 248002 R KEGG: psb:Psyr_2230 Mn2+/Fe2+ transporter, NRAMP family; Mn2+/Fe2+ transporter complement(246695..248002) Pseudomonas putida W619 6109012 YP_001747109.1 CDS PputW619_0234 NC_010501.1 248222 248482 R KEGG: pen:PSEEN5386 hypothetical protein; hypothetical protein complement(248222..248482) Pseudomonas putida W619 6109013 YP_001747110.1 CDS PputW619_0235 NC_010501.1 248622 250112 R KEGG: pen:PSEEN5385 magnesium chelatase subunit D; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(248622..250112) Pseudomonas putida W619 6109014 YP_001747111.1 CDS PputW619_0236 NC_010501.1 250367 252394 D KEGG: pen:PSEEN5383 hypothetical protein; hypothetical protein 250367..252394 Pseudomonas putida W619 6109015 YP_001747112.1 CDS PputW619_0237 NC_010501.1 252411 252674 R PFAM: protein of unknown function DUF526; KEGG: pen:PSEEN5377 hypothetical protein; hypothetical protein complement(252411..252674) Pseudomonas putida W619 6109016 YP_001747113.1 CDS PputW619_0238 NC_010501.1 253038 253376 D PFAM: nitrogen regulatory protein P-II; KEGG: pen:PSEEN5376 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 253038..253376 Pseudomonas putida W619 6109017 YP_001747114.1 CDS PputW619_0239 NC_010501.1 253424 254758 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN5375 ammonium transporter; ammonium transporter 253424..254758 Pseudomonas putida W619 6109018 YP_001747115.1 CDS PputW619_0240 NC_010501.1 255188 255517 D KEGG: pen:PSEEN5374 hypothetical protein; hypothetical protein 255188..255517 Pseudomonas putida W619 6109019 YP_001747116.1 CDS PputW619_0241 NC_010501.1 255598 256293 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5369 haloacid dehalogenase-like hydrolase; HAD family hydrolase complement(255598..256293) Pseudomonas putida W619 6109020 YP_001747117.1 CDS xerC NC_010501.1 256290 257189 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(256290..257189) Pseudomonas putida W619 6109021 YP_001747118.1 CDS PputW619_0243 NC_010501.1 257189 257899 R PFAM: protein of unknown function DUF484; KEGG: pen:PSEEN5367 hypothetical protein; hypothetical protein complement(257189..257899) Pseudomonas putida W619 6109022 YP_001747119.1 CDS dapF NC_010501.1 257913 258743 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(257913..258743) Pseudomonas putida W619 6109023 YP_001747120.1 CDS PputW619_0245 NC_010501.1 258748 259995 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN5365 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(258748..259995) Pseudomonas putida W619 6109024 YP_001747121.1 CDS PputW619_0246 NC_010501.1 260005 260208 R KEGG: pen:PSEEN5364 lipoprotein Lppl; lipoprotein Lppl complement(260005..260208) Pseudomonas putida W619 6109025 YP_001747122.1 CDS cyaY NC_010501.1 260461 260793 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 260461..260793 Pseudomonas putida W619 6109026 YP_001747123.1 CDS PputW619_0248 NC_010501.1 260795 261007 D PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN5362 hypothetical protein; hypothetical protein 260795..261007 Pseudomonas putida W619 6109027 YP_001747124.1 CDS PputW619_0249 NC_010501.1 261142 261552 D Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 261142..261552 Pseudomonas putida W619 6109028 YP_001747125.1 CDS cyaA NC_010501.1 261557 264421 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(261557..264421) Pseudomonas putida W619 6109029 YP_001747126.1 CDS PputW619_0251 NC_010501.1 264568 264813 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5358 hypothetical protein; hypothetical protein complement(264568..264813) Pseudomonas putida W619 6109030 YP_001747127.1 CDS PputW619_0252 NC_010501.1 264883 265182 R KEGG: pen:PSEEN5357 hypothetical protein; hypothetical protein complement(264883..265182) Pseudomonas putida W619 6109031 YP_001747128.1 CDS PputW619_0253 NC_010501.1 265330 265992 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5356 glutathione S-transferase; glutathione S-transferase domain-containing protein 265330..265992 Pseudomonas putida W619 6109032 YP_001747129.1 CDS PputW619_0254 NC_010501.1 266124 267518 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(266124..267518) Pseudomonas putida W619 6109033 YP_001747130.1 CDS PputW619_0255 NC_010501.1 267828 268571 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pen:PSEEN5354 alginate biosynthesis regulatory protein; LytTR family two component transcriptional regulator 267828..268571 Pseudomonas putida W619 6109034 YP_001747131.1 CDS hemC NC_010501.1 268706 269647 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 268706..269647 Pseudomonas putida W619 6109035 YP_001747132.1 CDS PputW619_0257 NC_010501.1 269644 270411 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 269644..270411 Pseudomonas putida W619 6109036 YP_001747133.1 CDS PputW619_0258 NC_010501.1 270457 271557 D PFAM: protein of unknown function DUF513 hemX; KEGG: pen:PSEEN5351 uroporphyrin-III C-methyltransferase HemX; hypothetical protein 270457..271557 Pseudomonas putida W619 6109037 YP_001747134.1 CDS PputW619_0259 NC_010501.1 271554 272792 D PFAM: HemY domain protein; KEGG: pen:PSEEN5350 HemY protein; HemY domain-containing protein 271554..272792 Pseudomonas putida W619 6109038 YP_001747135.1 CDS PputW619_0260 NC_010501.1 273014 273520 D PFAM: Disulphide bond formation protein DsbB; KEGG: pen:PSEEN0158 disulfide bond formation protein B1 (disulfide oxidoreductase 1); disulfide bond formation protein DsbB 273014..273520 Pseudomonas putida W619 6109039 YP_001747136.1 CDS PputW619_0261 NC_010501.1 273752 274222 D binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 273752..274222 Pseudomonas putida W619 6109040 YP_001747137.1 CDS PputW619_0262 NC_010501.1 274232 274897 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0160 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(274232..274897) Pseudomonas putida W619 6109041 YP_001747138.1 CDS PputW619_0263 NC_010501.1 275122 276126 D KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; alginate regulatory protein AlgP 275122..276126 Pseudomonas putida W619 6109042 YP_001747139.1 CDS PputW619_0264 NC_010501.1 276102 276584 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0162 hypothetical protein; hypothetical protein complement(276102..276584) Pseudomonas putida W619 6109043 YP_001747140.1 CDS PputW619_0265 NC_010501.1 276635 278545 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0163 ABC transporter, ATP-binding protein; ABC transporter-like protein 276635..278545 Pseudomonas putida W619 6109044 YP_001747141.1 CDS PputW619_0266 NC_010501.1 278728 279360 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0165 transporter, LysE family; lysine exporter protein LysE/YggA 278728..279360 Pseudomonas putida W619 6109045 YP_001747142.1 CDS PputW619_0267 NC_010501.1 279391 280143 R PFAM: band 7 protein; KEGG: pen:PSEEN0166 hypothetical protein; hypothetical protein complement(279391..280143) Pseudomonas putida W619 6109046 YP_001747143.1 CDS PputW619_0268 NC_010501.1 280146 281495 R PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN0167 hypothetical protein; hypothetical protein complement(280146..281495) Pseudomonas putida W619 6109047 YP_001747144.1 CDS PputW619_0269 NC_010501.1 281592 282050 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN0168 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 281592..282050 Pseudomonas putida W619 6109048 YP_001747145.1 CDS PputW619_0270 NC_010501.1 282112 282354 D KEGG: pen:PSEEN0169 hypothetical protein; hypothetical protein 282112..282354 Pseudomonas putida W619 6109049 YP_001747146.1 CDS PputW619_0271 NC_010501.1 282425 283063 D KEGG: pen:PSEEN0170 hypothetical protein; hypothetical protein 282425..283063 Pseudomonas putida W619 6109050 YP_001747147.1 CDS PputW619_0272 NC_010501.1 283070 283507 R PFAM: CBS domain containing protein; KEGG: pen:PSEEN0171 hypothetical protein; hypothetical protein complement(283070..283507) Pseudomonas putida W619 6109051 YP_001747148.1 CDS PputW619_0273 NC_010501.1 283700 285430 R KEGG: pen:PSEEN0172 dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20; hypothetical protein complement(283700..285430) Pseudomonas putida W619 6109052 YP_001747149.1 CDS PputW619_0274 NC_010501.1 285659 286021 R KEGG: pen:PSEEN5304 hypothetical protein; hypothetical protein complement(285659..286021) Pseudomonas putida W619 6109054 YP_001747150.1 CDS PputW619_0275 NC_010501.1 286148 286618 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN5303 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 286148..286618 Pseudomonas putida W619 6109055 YP_001747151.1 CDS PputW619_0276 NC_010501.1 286713 288089 R PFAM: adenylate cyclase; KEGG: pen:PSEEN5302 adenylate cyclase; adenylate cyclase complement(286713..288089) Pseudomonas putida W619 6109056 YP_001747152.1 CDS PputW619_0277 NC_010501.1 288204 289346 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 288204..289346 Pseudomonas putida W619 6109057 YP_001747153.1 CDS PputW619_0278 NC_010501.1 289472 290770 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 289472..290770 Pseudomonas putida W619 6109058 YP_001747154.1 CDS PputW619_0279 NC_010501.1 290834 292210 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5299 glutamine synthetase; glutamate--putrescine ligase complement(290834..292210) Pseudomonas putida W619 6109059 YP_001747155.1 CDS PputW619_0280 NC_010501.1 292785 294143 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN5297 glutamine synthetase; glutamate--putrescine ligase 292785..294143 Pseudomonas putida W619 6109060 YP_001747156.1 CDS PputW619_0281 NC_010501.1 294193 295554 D PFAM: aminotransferase class-III; KEGG: pen:PSEEN5296 aminotransferase, class III; putative aminotransferase 294193..295554 Pseudomonas putida W619 6109061 YP_001747157.1 CDS PputW619_0282 NC_010501.1 295725 296822 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5295 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 295725..296822 Pseudomonas putida W619 6109062 YP_001747158.1 CDS PputW619_0283 NC_010501.1 296872 298077 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5294 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 296872..298077 Pseudomonas putida W619 6109063 YP_001747159.1 CDS PputW619_0284 NC_010501.1 298138 299280 D KEGG: pen:PSEEN5293 puttaive putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 298138..299280 Pseudomonas putida W619 6109064 YP_001747160.1 CDS PputW619_0285 NC_010501.1 299277 300197 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5292 putrescine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 299277..300197 Pseudomonas putida W619 6109065 YP_001747161.1 CDS PputW619_0286 NC_010501.1 300194 301087 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5291 putrescine ABC transporter, permease protein; ornithine carbamoyltransferase 300194..301087 Pseudomonas putida W619 6109066 YP_001747162.1 CDS PputW619_0287 NC_010501.1 301295 302383 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5289 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 301295..302383 Pseudomonas putida W619 6109067 YP_001747163.1 CDS PputW619_0288 NC_010501.1 302380 303447 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN5288 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit 302380..303447 Pseudomonas putida W619 6109068 YP_001747164.1 CDS PputW619_0289 NC_010501.1 303444 306509 D PFAM: acriflavin resistance protein; KEGG: pen:PSEEN5287 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein 303444..306509 Pseudomonas putida W619 6109069 YP_001747165.1 CDS PputW619_0290 NC_010501.1 306694 306876 D KEGG: pfo:Pfl_0193 hypothetical protein; hypothetical protein 306694..306876 Pseudomonas putida W619 6109070 YP_001747166.1 CDS PputW619_0291 NC_010501.1 306925 307932 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5284 sulfate/thiosulfate import ABC transporter, periplasmic sulfate-binding protein; sulfate ABC transporter substrate-binding protein 306925..307932 Pseudomonas putida W619 6109071 YP_001747167.1 CDS PputW619_0292 NC_010501.1 308104 308922 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5283 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 308104..308922 Pseudomonas putida W619 6109072 YP_001747168.1 CDS PputW619_0293 NC_010501.1 308934 309806 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5282 sulfate/thiosulfate import ABC transporter, membrane protein; sulfate ABC transporter permease 308934..309806 Pseudomonas putida W619 6109073 YP_001747169.1 CDS PputW619_0294 NC_010501.1 309810 310799 D KEGG: pen:PSEEN5281 sulfate/thiosulfate import ABC transporter, ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase 309810..310799 Pseudomonas putida W619 6109074 YP_001747170.1 CDS PputW619_0295 NC_010501.1 311103 311897 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pen:PSEEN5280 TonB-like protein; TonB family protein 311103..311897 Pseudomonas putida W619 6109075 YP_001747171.1 CDS PputW619_0296 NC_010501.1 311928 312647 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5279 biopolymer transport protein ExbB; MotA/TolQ/ExbB proton channel 311928..312647 Pseudomonas putida W619 6109076 YP_001747172.1 CDS PputW619_0297 NC_010501.1 312649 313050 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN5278 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 312649..313050 Pseudomonas putida W619 6109077 YP_001747173.1 CDS PputW619_0298 NC_010501.1 313275 313856 D PFAM: protein of unknown function DUF1234; KEGG: pen:PSEEN5264 hypothetical protein; hypothetical protein 313275..313856 Pseudomonas putida W619 6109078 YP_001747174.1 CDS PputW619_0299 NC_010501.1 313921 314751 D PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN5263 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 313921..314751 Pseudomonas putida W619 6109079 YP_001747175.1 CDS PputW619_0300 NC_010501.1 314928 315713 D PFAM: NLPA lipoprotein; KEGG: pen:PSEEN5262 lipoprotein; NLPA lipoprotein 314928..315713 Pseudomonas putida W619 6109080 YP_001747176.1 CDS PputW619_0301 NC_010501.1 315952 318315 R PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN5257 penicillin amidase; peptidase S45 penicillin amidase complement(315952..318315) Pseudomonas putida W619 6109081 YP_001747177.1 CDS PputW619_0302 NC_010501.1 318402 318968 D PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN5256 acetyltransferase; hexapaptide repeat-containing transferase 318402..318968 Pseudomonas putida W619 6109082 YP_001747178.1 CDS PputW619_0303 NC_010501.1 318947 319516 R KEGG: pen:PSEEN5255 hypothetical protein; hypothetical protein complement(318947..319516) Pseudomonas putida W619 6109083 YP_001747179.1 CDS PputW619_0304 NC_010501.1 319636 320562 D KEGG: pen:PSEEN5254 lipase; lipase 319636..320562 Pseudomonas putida W619 6109084 YP_001747180.1 CDS PputW619_0305 NC_010501.1 320563 321315 R KEGG: pen:PSEEN5253 hypothetical protein; hypothetical protein complement(320563..321315) Pseudomonas putida W619 6109085 YP_001747181.1 CDS PputW619_0306 NC_010501.1 321420 322061 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN5252 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 321420..322061 Pseudomonas putida W619 6109086 YP_001747182.1 CDS PputW619_0307 NC_010501.1 322048 322551 D PFAM: protein of unknown function DUF523; KEGG: pfo:Pfl_5390 protein of unknown function DUF523; hypothetical protein 322048..322551 Pseudomonas putida W619 6109087 YP_001747183.1 CDS PputW619_0308 NC_010501.1 322612 323100 R KEGG: pen:PSEEN5250 periplasmic binding protein from ABC-type transporter; periplasmic binding protein from ABC-type transporter complement(322612..323100) Pseudomonas putida W619 6109088 YP_001747184.1 CDS PputW619_0309 NC_010501.1 323298 323774 D KEGG: pen:PSEEN5249 hypothetical protein; hypothetical protein 323298..323774 Pseudomonas putida W619 6109089 YP_001747185.1 CDS PputW619_0310 NC_010501.1 323904 325133 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(323904..325133) Pseudomonas putida W619 6109090 YP_001747186.1 CDS PputW619_0311 NC_010501.1 325281 326702 D PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN5247 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein 325281..326702 Pseudomonas putida W619 6109091 YP_001747187.1 CDS PputW619_0312 NC_010501.1 326727 327392 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pen:PSEEN5246 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 326727..327392 Pseudomonas putida W619 6109092 YP_001747188.1 CDS PputW619_0313 NC_010501.1 327498 328418 D PFAM: NHL repeat containing protein; SdiA-regulated domain protein; KEGG: pen:PSEEN5245 hypothetical protein; SdiA-regulated domain-containing protein 327498..328418 Pseudomonas putida W619 6109093 YP_001747189.1 CDS PputW619_0314 NC_010501.1 328508 329419 D PFAM: SdiA-regulated domain protein; KEGG: pen:PSEEN5244 hypothetical protein; SdiA-regulated domain-containing protein 328508..329419 Pseudomonas putida W619 6109094 YP_001747190.1 CDS PputW619_0315 NC_010501.1 329513 330187 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(329513..330187) Pseudomonas putida W619 6109095 YP_001747191.1 CDS PputW619_0316 NC_010501.1 330321 331835 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 330321..331835 Pseudomonas putida W619 6109096 YP_001747192.1 CDS PputW619_0317 NC_010501.1 331874 332299 D KEGG: pen:PSEEN5241 hypothetical protein; hypothetical protein 331874..332299 Pseudomonas putida W619 6109097 YP_001747193.1 CDS PputW619_0318 NC_010501.1 332401 333057 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN5240 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(332401..333057) Pseudomonas putida W619 6109098 YP_001747194.1 CDS PputW619_0319 NC_010501.1 333199 333678 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 333199..333678 Pseudomonas putida W619 6109099 YP_001747195.1 CDS PputW619_0320 NC_010501.1 333701 335980 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN5238 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase PtsP 333701..335980 Pseudomonas putida W619 6109100 YP_001747196.1 CDS PputW619_0321 NC_010501.1 336095 336841 R PFAM: protein of unknown function DUF833; KEGG: pen:PSEEN5237 hypothetical protein; hypothetical protein complement(336095..336841) Pseudomonas putida W619 6109101 YP_001747197.1 CDS PputW619_0322 NC_010501.1 336971 337753 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN5236 hypothetical protein; hypothetical protein 336971..337753 Pseudomonas putida W619 6109102 YP_001747198.1 CDS PputW619_0323 NC_010501.1 337770 338579 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 337770..338579 Pseudomonas putida W619 6109103 YP_001747199.1 CDS thyA NC_010501.1 338628 339599 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 338628..339599 Pseudomonas putida W619 6109104 YP_001747200.1 CDS PputW619_0325 NC_010501.1 339641 340084 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN5233 transcriptional regulator CadR; MerR family transcriptional regulator complement(339641..340084) Pseudomonas putida W619 6109105 YP_001747201.1 CDS PputW619_0326 NC_010501.1 340167 342419 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN5232 cadmium translocating P-type ATPase; heavy metal translocating P-type ATPase 340167..342419 Pseudomonas putida W619 6109106 YP_001747202.1 CDS PputW619_0327 NC_010501.1 342520 343389 D TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5231 transcriptional regulator, LysR family; LysR family transcriptional regulator 342520..343389 Pseudomonas putida W619 6109107 YP_001747203.1 CDS PputW619_0328 NC_010501.1 343507 344565 D KEGG: pen:PSEEN0267 ABC transporter, ATP-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; 2-aminoethylphosphonate ABC transporter ATP-binding protein 343507..344565 Pseudomonas putida W619 6109108 YP_001747204.1 CDS PputW619_0329 NC_010501.1 344567 346291 D TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0268 ABC transporter, permease protein; 2-aminoethylphosphonate ABC transporter permease 344567..346291 Pseudomonas putida W619 6109109 YP_001747205.1 CDS PputW619_0330 NC_010501.1 346322 347347 D TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0269 ABC transporter, periplasmic binding protein; 2-aminoethylphosphonate ABC transporter substrate-binding protein 346322..347347 Pseudomonas putida W619 6109110 YP_001747206.1 CDS PputW619_0331 NC_010501.1 347431 348795 R PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN0271 hypothetical protein; GTP-binding protein HSR1-related complement(347431..348795) Pseudomonas putida W619 6109111 YP_001747207.1 CDS PputW619_0332 NC_010501.1 348788 350212 R KEGG: pen:PSEEN0272 hypothetical protein; hypothetical protein complement(348788..350212) Pseudomonas putida W619 6109112 YP_001747208.1 CDS PputW619_0333 NC_010501.1 350234 350749 D PFAM: dihydrofolate reductase region; KEGG: pen:PSEEN0273 dihydrofolate reductase type I, trimethoprim resistance; dihydrofolate reductase 350234..350749 Pseudomonas putida W619 6109113 YP_001747209.1 CDS PputW619_0334 NC_010501.1 350784 352175 R PFAM: sodium:dicarboxylate symporter; KEGG: pen:PSEEN0277 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(350784..352175) Pseudomonas putida W619 6109114 YP_001747210.1 CDS PputW619_0335 NC_010501.1 352417 353472 D KEGG: pen:PSEEN0278 hypothetical protein; hypothetical protein 352417..353472 Pseudomonas putida W619 6109115 YP_001747211.1 CDS PputW619_0336 NC_010501.1 353854 355695 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(353854..355695) Pseudomonas putida W619 6109116 YP_001747212.1 CDS PputW619_0337 NC_010501.1 356175 357230 D PFAM: CBS domain containing protein; MgtE integral membrane region; KEGG: noc:Noc_1785 divalent cation transporter; MgtE integral membrane protein 356175..357230 Pseudomonas putida W619 6109117 YP_001747213.1 CDS PputW619_0338 NC_010501.1 357270 358466 R KEGG: pen:PSEEN0284 hypothetical protein; hypothetical protein complement(357270..358466) Pseudomonas putida W619 6109118 YP_001747214.1 CDS PputW619_0339 NC_010501.1 358622 359494 D PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0286 hypothetical protein; putative signal transduction protein 358622..359494 Pseudomonas putida W619 6109119 YP_001747215.1 CDS PputW619_0340 NC_010501.1 359498 360310 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 359498..360310 Pseudomonas putida W619 6109120 YP_001747216.1 CDS PputW619_0341 NC_010501.1 360369 360620 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0289 ferredoxin 4Fe-4S; 4Fe-4S ferredoxin complement(360369..360620) Pseudomonas putida W619 6109121 YP_001747217.1 CDS coaD NC_010501.1 360728 361207 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(360728..361207) Pseudomonas putida W619 6109122 YP_001747218.1 CDS PputW619_0343 NC_010501.1 361319 362917 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN0291 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase complement(361319..362917) Pseudomonas putida W619 6109123 YP_001747219.1 CDS PputW619_0344 NC_010501.1 362939 363424 R KEGG: pen:PSEEN0292 hypothetical protein; hypothetical protein complement(362939..363424) Pseudomonas putida W619 6109124 YP_001747220.1 CDS PputW619_0345 NC_010501.1 363435 364877 R PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0293 coniferyl aldehyde dehydrogenase (CALDH); aldehyde dehydrogenase complement(363435..364877) Pseudomonas putida W619 6109125 YP_001747221.1 CDS PputW619_0346 NC_010501.1 365017 365682 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN0294 transcriptional regulator, TetR family; TetR family transcriptional regulator 365017..365682 Pseudomonas putida W619 6109126 YP_001747222.1 CDS PputW619_0347 NC_010501.1 365718 366572 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0295 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 365718..366572 Pseudomonas putida W619 6109127 YP_001747223.1 CDS PputW619_0348 NC_010501.1 366582 367574 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN0296 hydrolase, alpha/beta superfamily; alpha/beta hydrolase fold family protein complement(366582..367574) Pseudomonas putida W619 6109128 YP_001747224.1 CDS PputW619_0349 NC_010501.1 367646 369040 R PFAM: peptidase M16 domain protein; KEGG: psa:PST_3994 predicted Zn-dependent peptidase; peptidase M16 domain-containing protein complement(367646..369040) Pseudomonas putida W619 6109129 YP_001747225.1 CDS PputW619_0350 NC_010501.1 369037 370380 R PFAM: peptidase M16 domain protein; KEGG: pmy:Pmen_4176 peptidase M16 domain protein; peptidase M16 domain-containing protein complement(369037..370380) Pseudomonas putida W619 6109130 YP_001747226.1 CDS PputW619_0351 NC_010501.1 370466 371068 R TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0297 methyltransferase; methyltransferase complement(370466..371068) Pseudomonas putida W619 6109131 YP_001747227.1 CDS PputW619_0352 NC_010501.1 371068 372552 R PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0298 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein complement(371068..372552) Pseudomonas putida W619 6109132 YP_001747228.1 CDS PputW619_0353 NC_010501.1 372545 373900 R PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0299 zinc-dependent peptidase, M16 family; peptidase M16 domain-containing protein complement(372545..373900) Pseudomonas putida W619 6109133 YP_001747229.1 CDS PputW619_0354 NC_010501.1 374133 375677 D KEGG: pen:PSEEN0300 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 374133..375677 Pseudomonas putida W619 6109134 YP_001747230.1 CDS PputW619_0355 NC_010501.1 375674 376345 D KEGG: pen:PSEEN0301 cell division ATP binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 375674..376345 Pseudomonas putida W619 6109135 YP_001747231.1 CDS PputW619_0356 NC_010501.1 376342 377367 D PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0302 cell division protein FtsX; hypothetical protein 376342..377367 Pseudomonas putida W619 6109136 YP_001747232.1 CDS PputW619_0357 NC_010501.1 377479 378333 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 377479..378333 Pseudomonas putida W619 6109137 YP_001747233.1 CDS mtgA NC_010501.1 378446 379156 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase complement(378446..379156) Pseudomonas putida W619 6109138 YP_001747234.1 CDS PputW619_0359 NC_010501.1 379221 379592 D PFAM: protein of unknown function DUF423; KEGG: pen:PSEEN0305 hypothetical protein; hypothetical protein 379221..379592 Pseudomonas putida W619 6109139 YP_001747235.1 CDS PputW619_0360 NC_010501.1 379696 379896 D with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 379696..379896 Pseudomonas putida W619 6109140 YP_001747236.1 CDS thiG NC_010501.1 379951 380745 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 379951..380745 Pseudomonas putida W619 6109141 YP_001747237.1 CDS trmB NC_010501.1 380755 381477 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 380755..381477 Pseudomonas putida W619 6109142 YP_001747238.1 CDS PputW619_0363 NC_010501.1 381647 381973 R KEGG: pen:PSEEN0310 hypothetical protein; hypothetical protein complement(381647..381973) Pseudomonas putida W619 6109143 YP_001747239.1 CDS PputW619_0364 NC_010501.1 381983 383170 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(381983..383170) Pseudomonas putida W619 6109144 YP_001747240.1 CDS PputW619_0365 NC_010501.1 383167 383763 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(383167..383763) Pseudomonas putida W619 6109145 YP_001747241.1 CDS PputW619_0366 NC_010501.1 383760 384194 R KEGG: pen:PSEEN0313 hypothetical protein; hypothetical protein complement(383760..384194) Pseudomonas putida W619 6109146 YP_001747242.1 CDS PputW619_0367 NC_010501.1 384217 384837 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0314 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW complement(384217..384837) Pseudomonas putida W619 6109147 YP_001747243.1 CDS metX NC_010501.1 384845 385984 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(384845..385984) Pseudomonas putida W619 6109148 YP_001747244.1 CDS PputW619_0369 NC_010501.1 386073 386663 R PFAM: protein of unknown function YGGT; KEGG: pen:PSEEN0316 hypothetical protein; hypothetical protein complement(386073..386663) Pseudomonas putida W619 6109149 YP_001747245.1 CDS PputW619_0370 NC_010501.1 386674 387492 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(386674..387492) Pseudomonas putida W619 6109150 YP_001747246.1 CDS PputW619_0371 NC_010501.1 387531 388217 R PFAM: alanine racemase domain protein; KEGG: pen:PSEEN0318 hypothetical protein; alanine racemase domain-containing protein complement(387531..388217) Pseudomonas putida W619 6109151 YP_001747247.1 CDS PputW619_0372 NC_010501.1 388283 389281 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pen:PSEEN0319 type IV pili twitching motility protein PilT; twitching motility protein 388283..389281 Pseudomonas putida W619 6109152 YP_001747248.1 CDS PputW619_0373 NC_010501.1 389318 389944 R PFAM: NLP/P60 protein; KEGG: pen:PSEEN0320 hypothetical protein; NLP/P60 protein complement(389318..389944) Pseudomonas putida W619 6109153 YP_001747249.1 CDS PputW619_0374 NC_010501.1 390121 390540 D PFAM: TM2 domain containing protein?; KEGG: pen:PSEEN0321 hypothetical protein; TM2 domain-containing protein 390121..390540 Pseudomonas putida W619 6109154 YP_001747250.1 CDS PputW619_0375 NC_010501.1 390585 391283 R PFAM: Sporulation domain protein; KEGG: pen:PSEEN0322 hypothetical protein; sporulation domain-containing protein complement(390585..391283) Pseudomonas putida W619 6109155 YP_001747251.1 CDS argS NC_010501.1 391285 393021 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(391285..393021) Pseudomonas putida W619 6109156 YP_001747252.1 CDS PputW619_0377 NC_010501.1 393186 395426 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(393186..395426) Pseudomonas putida W619 6109157 YP_001747253.1 CDS rpmE NC_010501.1 395573 395788 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 395573..395788 Pseudomonas putida W619 6109158 YP_001747254.1 CDS PputW619_0379 NC_010501.1 395791 396612 D PFAM: nuclease (SNase domain protein); KEGG: pen:PSEEN0326 nuclease, staphylococcal nuclease homologue; nuclease 395791..396612 Pseudomonas putida W619 6109159 YP_001747255.1 CDS PputW619_0380 NC_010501.1 396783 398060 D PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: pen:PSEEN0327 bifunctional protein (MaeB) [includes: malic oxidoreductase N-terminal; phosphotransacetylase C-terminal]; malate dehydrogenase 396783..398060 Pseudomonas putida W619 6109160 YP_001747256.1 CDS PputW619_0381 NC_010501.1 398202 400655 R KEGG: pen:PSEEN0328 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; 1A family penicillin-binding protein complement(398202..400655) Pseudomonas putida W619 6109161 YP_001747257.1 CDS PputW619_0382 NC_010501.1 400786 402492 R KEGG: pau:PA14_07480 putative reverse transcriptase; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; SMART: HNH nuclease; RNA-directed DNA polymerase complement(400786..402492) Pseudomonas putida W619 6109162 YP_001747258.1 CDS PputW619_0383 NC_010501.1 403679 404527 D KEGG: pen:PSEEN0330 type IV pili biogenesis protein PilM; type IV pili biogenesis protein PilM 403679..404527 Pseudomonas putida W619 6109163 YP_001747259.1 CDS PputW619_0384 NC_010501.1 404527 405063 D PFAM: Fimbrial assembly family protein; KEGG: pen:PSEEN0331 type IV pili biogenesis protein PilN; fimbrial assembly family protein 404527..405063 Pseudomonas putida W619 6109164 YP_001747260.1 CDS PputW619_0385 NC_010501.1 405060 406076 D KEGG: pen:PSEEN0332 type IV pili biogenesis protein PilP; type IV pili biogenesis protein PilP 405060..406076 Pseudomonas putida W619 6109165 YP_001747261.1 CDS PputW619_0386 NC_010501.1 406000 407268 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: pen:PSEEN0333 type IV pili biogenesis protein PilQ; type IV pilus secretin PilQ 406000..407268 Pseudomonas putida W619 6109166 YP_001747262.1 CDS aroK NC_010501.1 407300 407791 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 407300..407791 Pseudomonas putida W619 6109167 YP_001747263.1 CDS aroB NC_010501.1 407886 408983 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 407886..408983 Pseudomonas putida W619 6109168 YP_001747264.1 CDS PputW619_0389 NC_010501.1 408999 410579 D PFAM: Sporulation domain protein; KEGG: pen:PSEEN0336 hypothetical protein; sporulation domain-containing protein 408999..410579 Pseudomonas putida W619 6109169 YP_001747265.1 CDS gltB NC_010501.1 410953 415398 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 410953..415398 Pseudomonas putida W619 6109170 YP_001747266.1 CDS gltD NC_010501.1 415522 416940 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 415522..416940 Pseudomonas putida W619 6109171 YP_001747267.1 CDS hemE NC_010501.1 417092 418156 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 417092..418156 Pseudomonas putida W619 6109300 YP_001747268.1 CDS PputW619_0393 NC_010501.1 418316 418663 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0340 hypothetical protein; hypothetical protein 418316..418663 Pseudomonas putida W619 6109301 YP_001747269.1 CDS PputW619_0394 NC_010501.1 418780 420024 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0341 transporter, MFS superfamily; major facilitator transporter complement(418780..420024) Pseudomonas putida W619 6109302 YP_001747270.1 CDS PputW619_0395 NC_010501.1 420133 421032 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0342 transcriptional regulator, LysR family; LysR family transcriptional regulator 420133..421032 Pseudomonas putida W619 6109303 YP_001747271.1 CDS PputW619_0396 NC_010501.1 421123 421896 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase 421123..421896 Pseudomonas putida W619 6109304 YP_001747272.1 CDS PputW619_0397 NC_010501.1 421893 422327 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0368 thioredoxin; thioredoxin complement(421893..422327) Pseudomonas putida W619 6109305 YP_001747273.1 CDS PputW619_0398 NC_010501.1 422464 423924 R PFAM: protein of unknown function UPF0061; KEGG: pen:PSEEN0369 hypothetical protein; hypothetical protein complement(422464..423924) Pseudomonas putida W619 6109306 YP_001747274.1 CDS PputW619_0399 NC_010501.1 424095 427403 R small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA complement(424095..427403) Pseudomonas putida W619 6109307 YP_001747275.1 CDS PputW619_0400 NC_010501.1 427439 429181 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(427439..429181) Pseudomonas putida W619 6109308 YP_001747276.1 CDS PputW619_0401 NC_010501.1 429368 431059 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(429368..431059) Pseudomonas putida W619 6109309 YP_001747277.1 CDS PputW619_0402 NC_010501.1 431220 432692 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(431220..432692) Pseudomonas putida W619 6109310 YP_001747278.1 CDS PputW619_0403 NC_010501.1 432731 433387 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI complement(432731..433387) Pseudomonas putida W619 6109311 YP_001747279.1 CDS PputW619_0404 NC_010501.1 433864 435867 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0375 choline transporter BetT; choline/carnitine/betaine transporter 433864..435867 Pseudomonas putida W619 6109312 YP_001747280.1 CDS PputW619_0405 NC_010501.1 435987 440654 D KEGG: pen:PSEEN0376 hypothetical protein; hypothetical protein 435987..440654 Pseudomonas putida W619 6109313 YP_001747281.1 CDS PputW619_0406 NC_010501.1 440660 441439 R PFAM: protein of unknown function DUF610 YibQ; KEGG: pen:PSEEN0377 hypothetical protein; hypothetical protein complement(440660..441439) Pseudomonas putida W619 6109314 YP_001747282.1 CDS PputW619_0407 NC_010501.1 441436 442749 R KEGG: pen:PSEEN0378 carboxy-terminal processing protease precursor; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(441436..442749) Pseudomonas putida W619 6109315 YP_001747283.1 CDS PputW619_0408 NC_010501.1 442842 444128 R PFAM: peptidase M23B; KEGG: pen:PSEEN0379 metalloendopeptidase, M23/M37 family; peptidase M23B complement(442842..444128) Pseudomonas putida W619 6109316 YP_001747284.1 CDS PputW619_0409 NC_010501.1 444291 445826 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(444291..445826) Pseudomonas putida W619 6109317 YP_001747285.1 CDS PputW619_0410 NC_010501.1 446033 446446 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN0381 hypothetical protein; rhodanese domain-containing protein 446033..446446 Pseudomonas putida W619 6109318 YP_001747286.1 CDS PputW619_0411 NC_010501.1 446448 446702 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: pen:PSEEN0382 glutaredoxin; glutaredoxin 3 446448..446702 Pseudomonas putida W619 6109319 YP_001747287.1 CDS PputW619_0412 NC_010501.1 446742 447227 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 446742..447227 Pseudomonas putida W619 6109320 YP_001747288.1 CDS PputW619_0413 NC_010501.1 447298 447759 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN0384 RNA methyltransferase, TrmH family, group 2; RNA methyltransferase complement(447298..447759) Pseudomonas putida W619 6109321 YP_001747289.1 CDS PputW619_0414 NC_010501.1 447758 448195 D KEGG: pen:PSEEN0385 hypothetical protein; hypothetical protein 447758..448195 Pseudomonas putida W619 6109322 YP_001747290.1 CDS PputW619_0415 NC_010501.1 448554 449990 R KEGG: pen:PSEEN0386 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC complement(448554..449990) Pseudomonas putida W619 6109323 YP_001747291.1 CDS PputW619_0416 NC_010501.1 449987 451072 R KEGG: pen:PSEEN0387 sensory box histidine kinase NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(449987..451072) Pseudomonas putida W619 6109324 YP_001747292.1 CDS PputW619_0418 NC_010501.1 451615 453021 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: pfl:PFL_0386 glutamine synthetase, type I; glutamine synthetase, type I complement(451615..453021) Pseudomonas putida W619 6109326 YP_001747293.1 CDS PputW619_0419 NC_010501.1 453493 454947 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 453493..454947 Pseudomonas putida W619 6109327 YP_001747294.1 CDS PputW619_0420 NC_010501.1 455074 456894 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: pen:PSEEN0392 regulatory protein TypA; GTP-binding protein TypA 455074..456894 Pseudomonas putida W619 6109328 YP_001747295.1 CDS PputW619_0421 NC_010501.1 457041 457445 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN5108 hypothetical protein; hypothetical protein complement(457041..457445) Pseudomonas putida W619 6109329 YP_001747296.1 CDS PputW619_0422 NC_010501.1 457632 460082 D KEGG: pen:PSEEN5107 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 457632..460082 Pseudomonas putida W619 6109330 YP_001747297.1 CDS PputW619_0423 NC_010501.1 460248 461258 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 460248..461258 Pseudomonas putida W619 6109331 YP_001747298.1 CDS PputW619_0424 NC_010501.1 461262 461858 D PFAM: protein of unknown function DUF924; KEGG: pen:PSEEN5105 hypothetical protein; hypothetical protein 461262..461858 Pseudomonas putida W619 6109332 YP_001747299.1 CDS PputW619_0425 NC_010501.1 461894 463786 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5104 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(461894..463786) Pseudomonas putida W619 6109333 YP_001747300.1 CDS PputW619_0426 NC_010501.1 464009 464263 D KEGG: pen:PSEEN5103 lipoprotein; lipoprotein 464009..464263 Pseudomonas putida W619 6109334 YP_001747301.1 CDS PputW619_0427 NC_010501.1 464260 464832 D PFAM: Lipocalin family protein; KEGG: pen:PSEEN5102 outer membrane lipoprotein Blc; lipocalin family protein 464260..464832 Pseudomonas putida W619 6109335 YP_001747302.1 CDS PputW619_0428 NC_010501.1 464866 466230 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(464866..466230) Pseudomonas putida W619 6109336 YP_001747303.1 CDS PputW619_0429 NC_010501.1 466338 467084 D TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN5099 histidine utilization repressor; histidine utilization repressor 466338..467084 Pseudomonas putida W619 6109337 YP_001747304.1 CDS PputW619_0430 NC_010501.1 467081 467653 D PFAM: protein of unknown function DUF886; KEGG: pen:PSEEN5098 hypothetical protein; hypothetical protein 467081..467653 Pseudomonas putida W619 6109338 YP_001747305.1 CDS PputW619_0431 NC_010501.1 467911 469584 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 467911..469584 Pseudomonas putida W619 6109339 YP_001747306.1 CDS PputW619_0432 NC_010501.1 469654 471186 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 469654..471186 Pseudomonas putida W619 6109340 YP_001747307.1 CDS PputW619_0433 NC_010501.1 471252 472655 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN5095 amino acid transporter; amino acid permease-associated protein 471252..472655 Pseudomonas putida W619 6109341 YP_001747308.1 CDS PputW619_0434 NC_010501.1 472671 473876 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 472671..473876 Pseudomonas putida W619 6109342 YP_001747309.1 CDS PputW619_0435 NC_010501.1 473887 474690 D PFAM: N-formylglutamate amidohydrolase; KEGG: pen:PSEEN5093 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 473887..474690 Pseudomonas putida W619 6109343 YP_001747310.1 CDS PputW619_0436 NC_010501.1 474745 480288 R PFAM: leucine-rich repeat protein; SMART: leucine-rich repeat-containing protein typical subtype; KEGG: psb:Psyr_1302 leucine-rich repeat; hypothetical protein complement(474745..480288) Pseudomonas putida W619 6109344 YP_001747311.1 CDS PputW619_0437 NC_010501.1 480482 481453 D KEGG: pen:PSEEN5092 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 480482..481453 Pseudomonas putida W619 6109345 YP_001747312.1 CDS PputW619_0438 NC_010501.1 481450 481887 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 481450..481887 Pseudomonas putida W619 6109346 YP_001747313.1 CDS mdoG NC_010501.1 482150 483889 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 482150..483889 Pseudomonas putida W619 6109347 YP_001747314.1 CDS PputW619_0440 NC_010501.1 483882 486455 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 483882..486455 Pseudomonas putida W619 6109348 YP_001747315.1 CDS PputW619_0441 NC_010501.1 486671 487471 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN5087 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 486671..487471 Pseudomonas putida W619 6109349 YP_001747316.1 CDS PputW619_0442 NC_010501.1 487583 488545 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5086 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 487583..488545 Pseudomonas putida W619 6109350 YP_001747317.1 CDS PputW619_0443 NC_010501.1 488538 489272 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5085 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 488538..489272 Pseudomonas putida W619 6109351 YP_001747318.1 CDS PputW619_0444 NC_010501.1 489390 491333 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5084 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(489390..491333) Pseudomonas putida W619 6109352 YP_001747319.1 CDS PputW619_0445 NC_010501.1 491516 493432 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5082 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(491516..493432) Pseudomonas putida W619 6109353 YP_001747320.1 CDS PputW619_0446 NC_010501.1 493533 494240 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(493533..494240) Pseudomonas putida W619 6109354 YP_001747321.1 CDS PputW619_0447 NC_010501.1 494237 495028 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pen:PSEEN5080 twin aqrginine translocase protein subunit C; Sec-independent protein translocase subunit TatC complement(494237..495028) Pseudomonas putida W619 6109355 YP_001747322.1 CDS tatB NC_010501.1 495025 495393 R Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif; sec-independent translocase complement(495025..495393) Pseudomonas putida W619 6109356 YP_001747323.1 CDS tatA NC_010501.1 495397 495669 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A complement(495397..495669) Pseudomonas putida W619 6109357 YP_001747324.1 CDS hisE NC_010501.1 495695 496030 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(495695..496030) Pseudomonas putida W619 6109358 YP_001747325.1 CDS hisI NC_010501.1 496032 496424 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(496032..496424) Pseudomonas putida W619 6109359 YP_001747326.1 CDS PputW619_0452 NC_010501.1 496498 498117 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: pen:PSEEN5075 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway; 2-polyprenylphenol 6-hydroxylase complement(496498..498117) Pseudomonas putida W619 6109360 YP_001747327.1 CDS PputW619_0453 NC_010501.1 498114 498737 R PFAM: Sterol-binding domain protein; KEGG: pen:PSEEN5074 hypothetical protein; sterol-binding domain-containing protein complement(498114..498737) Pseudomonas putida W619 6109361 YP_001747328.1 CDS ubiE NC_010501.1 498737 499507 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(498737..499507) Pseudomonas putida W619 6109362 YP_001747329.1 CDS PputW619_0455 NC_010501.1 499632 499907 D TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: pen:PSEEN5072 hypothetical protein; polyhydroxyalkanoic acid system protein 499632..499907 Pseudomonas putida W619 6109363 YP_001747330.1 CDS PputW619_0456 NC_010501.1 500087 500506 D TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5071 polyhydroxyalkanoate granule-associated protein GA1; poly(hydroxyalkanoate) granule-associated protein 500087..500506 Pseudomonas putida W619 6109364 YP_001747331.1 CDS PputW619_0457 NC_010501.1 500517 501281 D TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pen:PSEEN5070 polyhydroxyalkanoate synthesis protein PhaF; poly(hydroxyalkanoate) granule-associated protein 500517..501281 Pseudomonas putida W619 6109365 YP_001747332.1 CDS PputW619_0458 NC_010501.1 501408 502022 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN5069 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(501408..502022) Pseudomonas putida W619 6109366 YP_001747333.1 CDS PputW619_0459 NC_010501.1 502036 503718 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5068 poly(3-hydroxyalkanoate) polymerase 2; class II poly(R)-hydroxyalkanoic acid synthase complement(502036..503718) Pseudomonas putida W619 6109367 YP_001747334.1 CDS PputW619_0460 NC_010501.1 503773 504630 R TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5067 poly(3-hydroxyalkanoate) depolymerase; poly(3-hydroxyalkanoate) depolymerase complement(503773..504630) Pseudomonas putida W619 6109368 YP_001747335.1 CDS PputW619_0461 NC_010501.1 504688 506367 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: pen:PSEEN5066 poly(3-hydroxyalkanoate) polymerase 1; class II poly(R)-hydroxyalkanoic acid synthase complement(504688..506367) Pseudomonas putida W619 6109369 YP_001747336.1 CDS PputW619_0462 NC_010501.1 506720 507097 R PFAM: protein of unknown function DUF971; KEGG: pen:PSEEN5065 hypothetical protein; hypothetical protein complement(506720..507097) Pseudomonas putida W619 6109370 YP_001747337.1 CDS hslU NC_010501.1 507259 508602 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(507259..508602) Pseudomonas putida W619 6109371 YP_001747338.2 CDS PputW619_0464 NC_010501.1 508679 509209 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(508679..509209) Pseudomonas putida W619 6109372 YP_001747339.1 CDS pyrC NC_010501.1 509463 510734 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(509463..510734) Pseudomonas putida W619 6109373 YP_001747340.1 CDS pyrB NC_010501.1 510731 511735 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(510731..511735) Pseudomonas putida W619 6109374 YP_001747341.1 CDS PputW619_0467 NC_010501.1 511749 512267 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase complement(511749..512267) Pseudomonas putida W619 6109375 YP_001747342.1 CDS PputW619_0468 NC_010501.1 512317 512742 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(512317..512742) Pseudomonas putida W619 6109376 YP_001747343.1 CDS PputW619_0469 NC_010501.1 512742 513311 R PFAM: protein of unknown function DUF179; KEGG: pen:PSEEN5058 hypothetical protein; hypothetical protein complement(512742..513311) Pseudomonas putida W619 6109377 YP_001747344.1 CDS PputW619_0470 NC_010501.1 513431 514333 R TIGRFAM: TonB family protein; KEGG: pen:PSEEN5057 hypothetical protein; TonB family protein complement(513431..514333) Pseudomonas putida W619 6109378 YP_001747345.1 CDS PputW619_0471 NC_010501.1 514479 515432 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(514479..515432) Pseudomonas putida W619 6109379 YP_001747346.1 CDS PputW619_0472 NC_010501.1 515676 516077 D PFAM: response regulator receiver; KEGG: pen:PSEEN5055 type IV pili response regulator PilG; response regulator receiver protein 515676..516077 Pseudomonas putida W619 6109380 YP_001747347.1 CDS PputW619_0473 NC_010501.1 516125 516490 D PFAM: response regulator receiver; KEGG: pen:PSEEN5054 type IV pili response regulator PilH; response regulator receiver protein 516125..516490 Pseudomonas putida W619 6109381 YP_001747348.1 CDS PputW619_0474 NC_010501.1 516487 517041 D PFAM: CheW domain protein; KEGG: pen:PSEEN5053 type IV pili signal transduction protein PilI; CheW protein 516487..517041 Pseudomonas putida W619 6109382 YP_001747349.1 CDS PputW619_0475 NC_010501.1 517053 519113 D PFAM: chemotaxis sensory transducer; KEGG: pen:PSEEN5052 type IV pili methyl-accepting chemotaxis transducer PilJ; methyl-accepting chemotaxis sensory transducer 517053..519113 Pseudomonas putida W619 6109383 YP_001747350.1 CDS PputW619_0476 NC_010501.1 519123 524012 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN5051 sensor histidine kinase/response regulator ChpA; CheA signal transduction histidine kinase 519123..524012 Pseudomonas putida W619 6109384 YP_001747351.1 CDS PputW619_0477 NC_010501.1 524005 524466 D PFAM: CheW domain protein; KEGG: pen:PSEEN5050 chemotaxis protein; CheW domain-containing protein 524005..524466 Pseudomonas putida W619 6109385 YP_001747352.1 CDS PputW619_0478 NC_010501.1 524585 525202 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: pen:PSEEN5049 hemolysin III; hemolysin III family channel protein 524585..525202 Pseudomonas putida W619 6109386 YP_001747353.1 CDS PputW619_0479 NC_010501.1 525199 525918 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(525199..525918) Pseudomonas putida W619 6109387 YP_001747354.1 CDS PputW619_0480 NC_010501.1 526090 527496 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(526090..527496) Pseudomonas putida W619 6109388 YP_001747355.1 CDS PputW619_0481 NC_010501.1 527575 528066 R KEGG: pen:PSEEN5046 hypothetical protein; hypothetical protein complement(527575..528066) Pseudomonas putida W619 6109389 YP_001747356.1 CDS PputW619_0482 NC_010501.1 528275 529972 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN5045 flavin-containing monamine oxidase family protein; amine oxidase 528275..529972 Pseudomonas putida W619 6109390 YP_001747357.1 CDS PputW619_0483 NC_010501.1 530178 530729 D PFAM: cytochrome B561; KEGG: pen:PSEEN5044 cytochrome, b561 family; cytochrome B561 530178..530729 Pseudomonas putida W619 6109391 YP_001747358.1 CDS PputW619_0484 NC_010501.1 530761 531339 D PFAM: YceI family protein; KEGG: pen:PSEEN5043 hypothetical protein; hypothetical protein 530761..531339 Pseudomonas putida W619 6109392 YP_001747359.1 CDS PputW619_0485 NC_010501.1 531400 533292 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN5042 ATP-dependent RNA helicase RhlE, DEAD box family; DEAD/DEAH box helicase complement(531400..533292) Pseudomonas putida W619 6109393 YP_001747360.1 CDS PputW619_0486 NC_010501.1 533509 534297 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein; extracellular solute-binding protein complement(533509..534297) Pseudomonas putida W619 6109394 YP_001747361.1 CDS PputW619_0487 NC_010501.1 534374 535450 R KEGG: pae:PA0429 hypothetical protein; hypothetical protein complement(534374..535450) Pseudomonas putida W619 6109395 YP_001747362.1 CDS PputW619_0488 NC_010501.1 535545 536390 R KEGG: pen:PSEEN5038 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(535545..536390) Pseudomonas putida W619 6109396 YP_001747363.1 CDS PputW619_0489 NC_010501.1 536557 537966 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(536557..537966) Pseudomonas putida W619 6109397 YP_001747364.1 CDS PputW619_0490 NC_010501.1 538263 538664 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5034 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 538263..538664 Pseudomonas putida W619 6109398 YP_001747365.1 CDS PputW619_0491 NC_010501.1 538754 539989 R PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5033 Na+/H+ antiporter; sodium/hydrogen exchanger complement(538754..539989) Pseudomonas putida W619 6109399 YP_001747366.1 CDS PputW619_0492 NC_010501.1 540192 541025 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5032 hypothetical protein; hypothetical protein 540192..541025 Pseudomonas putida W619 6109400 YP_001747367.1 CDS PputW619_0493 NC_010501.1 541051 541437 D KEGG: pen:PSEEN5031 hypothetical protein; hypothetical protein 541051..541437 Pseudomonas putida W619 6109401 YP_001747368.1 CDS PputW619_0494 NC_010501.1 541487 542638 R PFAM: MltA domain protein; 3D domain protein; KEGG: pen:PSEEN5030 outer membrane-bound lytic murein transglycolase A; MltA domain-containing protein complement(541487..542638) Pseudomonas putida W619 6109402 YP_001747369.1 CDS PputW619_0495 NC_010501.1 542754 543200 D PFAM: cytochrome c prime; KEGG: pen:PSEEN5029 cytochrome c'; cytochrome c prime 542754..543200 Pseudomonas putida W619 6109403 YP_001747370.1 CDS PputW619_0496 NC_010501.1 543257 543652 R PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein complement(543257..543652) Pseudomonas putida W619 6109404 YP_001747371.1 CDS PputW619_0497 NC_010501.1 543780 544175 R PFAM: protein of unknown function DUF1090; KEGG: pen:PSEEN5028 hypothetical protein; hypothetical protein complement(543780..544175) Pseudomonas putida W619 6109405 YP_001747372.1 CDS ligB NC_010501.1 544308 546011 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB complement(544308..546011) Pseudomonas putida W619 6109406 YP_001747373.1 CDS PputW619_0499 NC_010501.1 546178 547368 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(546178..547368) Pseudomonas putida W619 6109407 YP_001747374.1 CDS PputW619_0500 NC_010501.1 547388 548380 R PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5025 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(547388..548380) Pseudomonas putida W619 6109408 YP_001747375.1 CDS PputW619_0501 NC_010501.1 548607 550604 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 548607..550604 Pseudomonas putida W619 6109409 YP_001747376.1 CDS PputW619_0502 NC_010501.1 550761 551822 D KEGG: pen:PSEEN5023 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 550761..551822 Pseudomonas putida W619 6109410 YP_001747377.1 CDS pgk NC_010501.1 551835 552998 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 551835..552998 Pseudomonas putida W619 6109411 YP_001747378.1 CDS PputW619_0504 NC_010501.1 553031 553249 D KEGG: pen:PSEEN5021 hypothetical protein; hypothetical protein 553031..553249 Pseudomonas putida W619 6109412 YP_001747379.1 CDS PputW619_0505 NC_010501.1 553314 553643 D KEGG: pen:PSEEN5020 lipoprotein; lipoprotein 553314..553643 Pseudomonas putida W619 6109413 YP_001747380.1 CDS PputW619_0506 NC_010501.1 553745 554809 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 553745..554809 Pseudomonas putida W619 6109414 YP_001747381.1 CDS PputW619_0507 NC_010501.1 555006 557126 D KEGG: pen:PSEEN5017 sensory box protein/response regulator (hybrid); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 555006..557126 Pseudomonas putida W619 6109415 YP_001747382.1 CDS PputW619_0508 NC_010501.1 557166 557666 D PFAM: protein of unknown function DUF45; KEGG: pen:PSEEN5016 hypothetical protein; hypothetical protein 557166..557666 Pseudomonas putida W619 6109416 YP_001747383.1 CDS PputW619_0509 NC_010501.1 557679 557975 D KEGG: pen:PSEEN5015 hypothetical protein; hypothetical protein 557679..557975 Pseudomonas putida W619 6109417 YP_001747384.1 CDS PputW619_0510 NC_010501.1 558126 558863 D SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5011 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 558126..558863 Pseudomonas putida W619 6109418 YP_001747385.1 CDS PputW619_0511 NC_010501.1 558887 561070 R TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: pen:PSEEN5010 hypothetical protein; YccS/YhfK family integral membrane protein complement(558887..561070) Pseudomonas putida W619 6109419 YP_001747386.1 CDS PputW619_0512 NC_010501.1 561154 562386 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5009 hypothetical protein; hypothetical protein complement(561154..562386) Pseudomonas putida W619 6109420 YP_001747387.1 CDS PputW619_0513 NC_010501.1 562469 563854 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(562469..563854) Pseudomonas putida W619 6109421 YP_001747388.1 CDS PputW619_0514 NC_010501.1 563919 565346 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5007 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter complement(563919..565346) Pseudomonas putida W619 6109422 YP_001747389.1 CDS PputW619_0515 NC_010501.1 565483 566814 R KEGG: pen:PSEEN5006 hypothetical protein; hypothetical protein complement(565483..566814) Pseudomonas putida W619 6109423 YP_001747390.1 CDS PputW619_0516 NC_010501.1 566814 568256 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN5005 peptidase, TldD/PmbA family; peptidase U62 modulator of DNA gyrase complement(566814..568256) Pseudomonas putida W619 6109424 YP_001747391.1 CDS PputW619_0517 NC_010501.1 568287 570089 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5004 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(568287..570089) Pseudomonas putida W619 6109425 YP_001747392.1 CDS PputW619_0518 NC_010501.1 571127 571579 D KEGG: kpn:KPN_00712 putative arginine/ornithine antiporter; hypothetical protein 571127..571579 Pseudomonas putida W619 6109426 YP_001747393.1 CDS PputW619_0519 NC_010501.1 572230 572379 D KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 572230..572379 Pseudomonas putida W619 6109427 YP_001747394.1 CDS PputW619_0520 NC_010501.1 572535 572798 D KEGG: pen:PSEEN0872 hypothetical protein; hypothetical protein 572535..572798 Pseudomonas putida W619 6109428 YP_001747395.1 CDS putA NC_010501.1 572969 576922 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(572969..576922) Pseudomonas putida W619 6109429 YP_001747396.1 CDS PputW619_0522 NC_010501.1 577279 578757 D TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pen:PSEEN4998 major sodium:proline symporter (SSS family); sodium/proline symporter 577279..578757 Pseudomonas putida W619 6109430 YP_001747397.1 CDS PputW619_0523 NC_010501.1 578887 579723 D PFAM: protein of unknown function DUF519; KEGG: pen:PSEEN4997 hypothetical protein; hypothetical protein 578887..579723 Pseudomonas putida W619 6109431 YP_001747398.1 CDS PputW619_0524 NC_010501.1 579908 581665 D PFAM: Carbamoyltransferase; KEGG: pen:PSEEN4996 carbamoyltransferase, NodU family; carbamoyltransferase 579908..581665 Pseudomonas putida W619 6109432 YP_001747399.1 CDS PputW619_0525 NC_010501.1 581649 582779 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN4995 glycosyl transferase; glycosyl transferase group 1 protein 581649..582779 Pseudomonas putida W619 6109433 YP_001747400.1 CDS PputW619_0526 NC_010501.1 582779 583675 D PFAM: Mig-14 family protein; KEGG: pen:PSEEN4994 hypothetical protein; Mig-14 family protein 582779..583675 Pseudomonas putida W619 6109434 YP_001747401.1 CDS PputW619_0527 NC_010501.1 583672 585075 D PFAM: LmbE family protein; KEGG: pen:PSEEN4993 hypothetical protein; LmbE family protein 583672..585075 Pseudomonas putida W619 6109435 YP_001747402.1 CDS PputW619_0528 NC_010501.1 585124 586080 D KEGG: pen:PSEEN4992 hypothetical protein; hypothetical protein 585124..586080 Pseudomonas putida W619 6109436 YP_001747403.1 CDS PputW619_0529 NC_010501.1 586148 586921 D KEGG: pen:PSEEN4991 hypothetical protein; hypothetical protein 586148..586921 Pseudomonas putida W619 6109437 YP_001747404.1 CDS PputW619_0530 NC_010501.1 586979 587584 R KEGG: pen:PSEEN4989 toluene tolerance protein Ttg8; toluene tolerance protein Ttg8 complement(586979..587584) Pseudomonas putida W619 6109438 YP_001747405.1 CDS PputW619_0531 NC_010501.1 587810 589621 D KEGG: pen:PSEEN4987 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 587810..589621 Pseudomonas putida W619 6109439 YP_001747406.1 CDS PputW619_0532 NC_010501.1 589752 591173 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 589752..591173 Pseudomonas putida W619 6109440 YP_001747407.1 CDS PputW619_0533 NC_010501.1 591206 592174 R KEGG: pen:PSEEN4985 hypothetical protein; hypothetical protein complement(591206..592174) Pseudomonas putida W619 6109441 YP_001747408.1 CDS PputW619_0534 NC_010501.1 592225 593037 R PFAM: aldo/keto reductase; KEGG: pen:PSEEN4984 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(592225..593037) Pseudomonas putida W619 6109442 YP_001747409.1 CDS PputW619_0535 NC_010501.1 593034 594209 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4983 oxidase, FAD-binding; FAD dependent oxidoreductase complement(593034..594209) Pseudomonas putida W619 6109443 YP_001747410.1 CDS PputW619_0536 NC_010501.1 594286 594618 R PFAM: small multidrug resistance protein; KEGG: pen:PSEEN4982 multidrug efflux SMR transporter; small multidrug resistance protein complement(594286..594618) Pseudomonas putida W619 6109444 YP_001747411.1 CDS PputW619_0537 NC_010501.1 594705 595595 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4981 transcriptional regulator, LysR family; LysR family transcriptional regulator 594705..595595 Pseudomonas putida W619 6109445 YP_001747412.1 CDS PputW619_0538 NC_010501.1 595607 596878 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 595607..596878 Pseudomonas putida W619 6109446 YP_001747413.1 CDS PputW619_0539 NC_010501.1 596964 598352 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pfl:PFL_4913 transcriptional regulator, GntR family; transcriptional regulator complement(596964..598352) Pseudomonas putida W619 6109447 YP_001747414.1 CDS PputW619_0540 NC_010501.1 598749 599798 D KEGG: fal:FRAAL4688 putative clavaminate synthase-like (oxidase); hypothetical protein 598749..599798 Pseudomonas putida W619 6109448 YP_001747415.1 CDS PputW619_0541 NC_010501.1 599830 600615 D PFAM: protein of unknown function DUF81; KEGG: fno:Fnod_1043 protein of unknown function DUF81; hypothetical protein 599830..600615 Pseudomonas putida W619 6109449 YP_001747416.1 CDS PputW619_0542 NC_010501.1 600641 601402 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmu:PM0579 oxidoreductase, short chain dehydrogenase/reductase, putative; short-chain dehydrogenase/reductase SDR 600641..601402 Pseudomonas putida W619 6109450 YP_001747417.1 CDS PputW619_0543 NC_010501.1 601531 602121 D PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN0563 formate dehydrogenase-O, major subunit; molybdopterin oxidoreductase Fe4S4 region 601531..602121 Pseudomonas putida W619 6109451 YP_001747418.1 CDS PputW619_0544 NC_010501.1 602170 604599 D KEGG: pen:PSEEN0564 formate dehydrogenase-N major subunit, anaerobic; selenopeptide; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 602170..604599 Pseudomonas putida W619 6109452 YP_001747419.1 CDS PputW619_0545 NC_010501.1 604599 605555 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: pen:PSEEN0565 formate dehydrogenase-O, Fe-S subunit; formate dehydrogenase subunit beta 604599..605555 Pseudomonas putida W619 6109453 YP_001747420.1 CDS PputW619_0546 NC_010501.1 605552 606208 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pen:PSEEN0566 formate dehydrogenase-O, cytochrome b556 (FDO) subunit; formate dehydrogenase subunit gamma 605552..606208 Pseudomonas putida W619 6109454 YP_001747421.1 CDS PputW619_0547 NC_010501.1 606189 607139 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: pen:PSEEN0567 formate dehydrogenase formation protein; formate dehydrogenase accessory protein FdhE 606189..607139 Pseudomonas putida W619 6109455 YP_001747422.1 CDS PputW619_0548 NC_010501.1 607286 608713 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 607286..608713 Pseudomonas putida W619 6109456 YP_001747423.1 CDS PputW619_0549 NC_010501.1 608710 610632 D TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: pen:PSEEN0569 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 608710..610632 Pseudomonas putida W619 6109457 YP_001747424.1 CDS PputW619_0550 NC_010501.1 610744 611742 R PFAM: Asparaginase/glutaminase; KEGG: pen:PSEEN0570 L-asparaginase, type I; asparaginase complement(610744..611742) Pseudomonas putida W619 6109459 YP_001747425.1 CDS PputW619_0551 NC_010501.1 611806 613248 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: pen:PSEEN0571 sodium/alanine symporter; amino acid carrier protein complement(611806..613248) Pseudomonas putida W619 6109460 YP_001747426.1 CDS PputW619_0552 NC_010501.1 613427 614236 D KEGG: pen:PSEEN0572 transcriptional regulator, Cro/CI family; Cro/CI family transcriptional regulator 613427..614236 Pseudomonas putida W619 6109461 YP_001747427.1 CDS PputW619_0553 NC_010501.1 614448 615332 D PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0574 dTDP-4-rhamnose reductase-related protein; dTDP-4-dehydrorhamnose reductase 614448..615332 Pseudomonas putida W619 6109462 YP_001747428.1 CDS PputW619_0554 NC_010501.1 615325 616257 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pen:PSEEN0575 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 615325..616257 Pseudomonas putida W619 6109463 YP_001747429.1 CDS PputW619_0555 NC_010501.1 616305 616748 R PFAM: helix-turn-helix HxlR type; KEGG: pen:PSEEN0576 hypothetical protein; HxlR family transcriptional regulator complement(616305..616748) Pseudomonas putida W619 6109464 YP_001747430.1 CDS PputW619_0556 NC_010501.1 616853 618058 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0577 transport protein, MFS superfamily; major facilitator transporter 616853..618058 Pseudomonas putida W619 6109465 YP_001747431.1 CDS PputW619_0557 NC_010501.1 618046 618729 R PFAM: OmpW family protein; KEGG: pen:PSEEN0578 outer membrane protein OprG; OmpW family protein complement(618046..618729) Pseudomonas putida W619 6109466 YP_001747432.1 CDS PputW619_0558 NC_010501.1 618839 619354 R KEGG: pen:PSEEN0579 lipoprotein; lipoprotein complement(618839..619354) Pseudomonas putida W619 6109467 YP_001747433.1 CDS PputW619_0559 NC_010501.1 619364 620629 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN0580 ABC efflux transporter, permease protein; hypothetical protein complement(619364..620629) Pseudomonas putida W619 6109468 YP_001747434.1 CDS PputW619_0560 NC_010501.1 620629 621339 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0581 ABC transporter, ATP binding component; ABC transporter-like protein complement(620629..621339) Pseudomonas putida W619 6109469 YP_001747435.1 CDS PputW619_0561 NC_010501.1 621340 621924 R KEGG: pen:PSEEN0582 hypothetical protein; hypothetical protein complement(621340..621924) Pseudomonas putida W619 6109470 YP_001747436.1 CDS PputW619_0562 NC_010501.1 622058 622402 D KEGG: pen:PSEEN0583 hypothetical protein; hypothetical protein 622058..622402 Pseudomonas putida W619 6109471 YP_001747437.1 CDS PputW619_0563 NC_010501.1 622461 623333 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pen:PSEEN0584 thioredoxin; thioredoxin complement(622461..623333) Pseudomonas putida W619 6109472 YP_001747438.1 CDS PputW619_0564 NC_010501.1 623365 624024 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN0585 hypothetical protein; type 12 methyltransferase complement(623365..624024) Pseudomonas putida W619 6109473 YP_001747439.1 CDS PputW619_0565 NC_010501.1 624025 624477 R KEGG: pen:PSEEN0586 hypothetical protein; hypothetical protein complement(624025..624477) Pseudomonas putida W619 6109474 YP_001747440.1 CDS nrdR NC_010501.1 624584 625048 D PFAM: ATP-cone domain protein; KEGG: pen:PSEEN0587 hypothetical protein; transcriptional regulator NrdR 624584..625048 Pseudomonas putida W619 6109475 YP_001747441.1 CDS PputW619_0567 NC_010501.1 625051 626181 D KEGG: pen:PSEEN0588 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 625051..626181 Pseudomonas putida W619 6109476 YP_001747442.1 CDS PputW619_0568 NC_010501.1 626224 626889 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 626224..626889 Pseudomonas putida W619 6109477 YP_001747443.1 CDS PputW619_0569 NC_010501.1 626908 627999 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 626908..627999 Pseudomonas putida W619 6109478 YP_001747444.1 CDS ribH NC_010501.1 628055 628567 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 628055..628567 Pseudomonas putida W619 6109479 YP_001747445.1 CDS nusB NC_010501.1 628564 629064 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 628564..629064 Pseudomonas putida W619 6109480 YP_001747446.1 CDS PputW619_0572 NC_010501.1 629083 630042 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 629083..630042 Pseudomonas putida W619 6109481 YP_001747447.1 CDS PputW619_0573 NC_010501.1 630039 630542 D PFAM: phosphatidylglycerophosphatase A; KEGG: pen:PSEEN0594 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 630039..630542 Pseudomonas putida W619 6109482 YP_001747448.1 CDS PputW619_0574 NC_010501.1 630560 631303 D KEGG: pen:PSEEN0595 hypothetical protein; hypothetical protein 630560..631303 Pseudomonas putida W619 6109483 YP_001747449.1 CDS ribA NC_010501.1 631438 632055 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 631438..632055 Pseudomonas putida W619 6109484 YP_001747450.1 CDS PputW619_0576 NC_010501.1 632052 632471 D KEGG: pen:PSEEN0597 hypothetical protein; hypothetical protein 632052..632471 Pseudomonas putida W619 6109485 YP_001747451.1 CDS PputW619_0577 NC_010501.1 632471 633283 D PFAM: periplasmic binding protein; KEGG: pen:PSEEN0598 periplasmic cobalamin-binding protein HutB; periplasmic binding protein 632471..633283 Pseudomonas putida W619 6109486 YP_001747452.1 CDS PputW619_0578 NC_010501.1 633261 635144 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0599 cobalamine TonB-dependent receptor; TonB-dependent receptor plug complement(633261..635144) Pseudomonas putida W619 6109487 YP_001747453.1 CDS PputW619_0579 NC_010501.1 635224 637119 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(635224..637119) Pseudomonas putida W619 6109488 YP_001747454.1 CDS PputW619_0580 NC_010501.1 637232 638119 R PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0601 geranyltranstransferase; polyprenyl synthetase complement(637232..638119) Pseudomonas putida W619 6109489 YP_001747455.1 CDS PputW619_0581 NC_010501.1 638116 638358 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(638116..638358) Pseudomonas putida W619 6109490 YP_001747456.1 CDS ribB NC_010501.1 638536 639186 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(638536..639186) Pseudomonas putida W619 6109491 YP_001747457.1 CDS PputW619_0583 NC_010501.1 639501 640391 R PFAM: putative esterase; KEGG: pen:PSEEN0617 hypothetical protein; putative esterase complement(639501..640391) Pseudomonas putida W619 6109492 YP_001747458.1 CDS PputW619_0584 NC_010501.1 640474 641820 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pae:PA2687 two-component sensor PfeS; integral membrane sensor signal transduction histidine kinase complement(640474..641820) Pseudomonas putida W619 6109493 YP_001747459.1 CDS PputW619_0585 NC_010501.1 641820 642512 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pae:PA2686 two-component response regulator PfeR; two component transcriptional regulator complement(641820..642512) Pseudomonas putida W619 6109494 YP_001747460.1 CDS PputW619_0586 NC_010501.1 642706 644880 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: csa:Csal_2539 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 642706..644880 Pseudomonas putida W619 6109495 YP_001747461.1 CDS PputW619_0587 NC_010501.1 645218 645460 D KEGG: pen:PSEEN3675 hypothetical protein; hypothetical protein 645218..645460 Pseudomonas putida W619 6109496 YP_001747462.1 CDS PputW619_0588 NC_010501.1 645468 645698 D KEGG: pen:PSEEN2484 hypothetical protein; hypothetical protein 645468..645698 Pseudomonas putida W619 6109497 YP_001747463.1 CDS PputW619_0589 NC_010501.1 645937 646638 R KEGG: pen:PSEEN0625 transcriptional regulator; transcriptional regulator complement(645937..646638) Pseudomonas putida W619 6109498 YP_001747464.1 CDS PputW619_0590 NC_010501.1 646810 647337 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(646810..647337) Pseudomonas putida W619 6109499 YP_001747465.1 CDS PputW619_0591 NC_010501.1 647431 648246 R PFAM: protein of unknown function DUF980; KEGG: pen:PSEEN0627 zinc-dependent peptidase (M family); hypothetical protein complement(647431..648246) Pseudomonas putida W619 6109500 YP_001747466.1 CDS PputW619_0592 NC_010501.1 648255 648902 R PFAM: SNARE associated Golgi protein; KEGG: pen:PSEEN0628 hypothetical protein; hypothetical protein complement(648255..648902) Pseudomonas putida W619 6109501 YP_001747467.1 CDS PputW619_0593 NC_010501.1 649094 649552 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0630 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(649094..649552) Pseudomonas putida W619 6109502 YP_001747468.1 CDS PputW619_0594 NC_010501.1 649660 650478 R catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit complement(649660..650478) Pseudomonas putida W619 6109503 YP_001747469.1 CDS PputW619_0595 NC_010501.1 650487 651881 R PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pen:PSEEN0632 ethanolamine ammonia-lyase, heavy chain; ethanolamine ammonia lyase large subunit complement(650487..651881) Pseudomonas putida W619 6109504 YP_001747470.1 CDS PputW619_0596 NC_010501.1 651930 653378 R TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0633 transport protein; ethanolamine transporter complement(651930..653378) Pseudomonas putida W619 6109505 YP_001747471.1 CDS PputW619_0597 NC_010501.1 653555 655075 R PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0634 NAD+ dependent aldehyde dehydrogenase; aldehyde dehydrogenase complement(653555..655075) Pseudomonas putida W619 6109506 YP_001747472.1 CDS PputW619_0598 NC_010501.1 655332 657317 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0635 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 655332..657317 Pseudomonas putida W619 6109507 YP_001747473.1 CDS PputW619_0599 NC_010501.1 657384 658733 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN0636 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 657384..658733 Pseudomonas putida W619 6109508 YP_001747474.1 CDS PputW619_0600 NC_010501.1 658730 659359 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pen:PSEEN0637 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; aromatic acid decarboxylase 658730..659359 Pseudomonas putida W619 6109509 YP_001747475.1 CDS PputW619_0601 NC_010501.1 659377 659643 D PFAM: protein of unknown function DUF1375; KEGG: pen:PSEEN0638 hypothetical protein; hypothetical protein 659377..659643 Pseudomonas putida W619 6109510 YP_001747476.1 CDS PputW619_0602 NC_010501.1 659690 660334 R KEGG: pen:PSEEN4841 hypothetical protein; hypothetical protein complement(659690..660334) Pseudomonas putida W619 6109511 YP_001747477.1 CDS PputW619_0603 NC_010501.1 660362 662095 R PFAM: Peptidase C13, legumain asparaginyl peptidase; MORN repeat-containing protein; KEGG: pen:PSEEN4840 hypothetical protein; peptidase C13, legumain asparaginyl peptidase complement(660362..662095) Pseudomonas putida W619 6109512 YP_001747478.1 CDS PputW619_0604 NC_010501.1 662190 662645 R PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN4838 MaoC-like dehydratase; dehydratase complement(662190..662645) Pseudomonas putida W619 6109513 YP_001747479.1 CDS PputW619_0605 NC_010501.1 662790 663152 D PFAM: LrgA family protein; KEGG: pen:PSEEN4836 hypothetical protein; LrgA family protein 662790..663152 Pseudomonas putida W619 6109514 YP_001747480.1 CDS PputW619_0606 NC_010501.1 663149 663865 D PFAM: LrgB family protein; KEGG: pen:PSEEN4835 hypothetical protein; LrgB family protein 663149..663865 Pseudomonas putida W619 6109515 YP_001747481.1 CDS PputW619_0607 NC_010501.1 663875 664465 D PFAM: peptidase S16 lon domain protein; KEGG: pen:PSEEN4834 ATP-dependent protease La domain protein; peptidase S16 lon domain-containing protein 663875..664465 Pseudomonas putida W619 6109516 YP_001747482.1 CDS PputW619_0608 NC_010501.1 664538 665854 R PFAM: phosphoesterase PA-phosphatase related; SNARE associated Golgi protein; KEGG: pen:PSEEN4833 phosphatase, PAP2 family; PA-phosphatase-like phosphoesterase complement(664538..665854) Pseudomonas putida W619 6109517 YP_001747483.1 CDS PputW619_0609 NC_010501.1 665858 666550 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(665858..666550) Pseudomonas putida W619 6109518 YP_001747484.1 CDS proA NC_010501.1 666755 668026 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 666755..668026 Pseudomonas putida W619 6109519 YP_001747485.1 CDS nadD NC_010501.1 668028 668687 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 668028..668687 Pseudomonas putida W619 6109520 YP_001747486.1 CDS PputW619_0612 NC_010501.1 668733 669155 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pen:PSEEN4828 hypothetical protein; iojap family protein 668733..669155 Pseudomonas putida W619 6109521 YP_001747487.1 CDS PputW619_0613 NC_010501.1 669165 669632 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 669165..669632 Pseudomonas putida W619 6109522 YP_001747488.1 CDS PputW619_0614 NC_010501.1 669649 671538 D KEGG: pen:PSEEN4826 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 669649..671538 Pseudomonas putida W619 6109523 YP_001747489.1 CDS PputW619_0615 NC_010501.1 671535 672680 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pen:PSEEN4825 rod shape-determining protein; rod shape-determining protein RodA 671535..672680 Pseudomonas putida W619 6109524 YP_001747490.1 CDS PputW619_0616 NC_010501.1 672698 673708 D TIGRFAM: lytic murein transglycosylase B; KEGG: pen:PSEEN4824 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase B 672698..673708 Pseudomonas putida W619 6109525 YP_001747491.1 CDS PputW619_0617 NC_010501.1 673708 674706 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: pen:PSEEN4823 lipoprotein, rare lipoprotein A family; rare lipoprotein A 673708..674706 Pseudomonas putida W619 6109526 YP_001747492.1 CDS PputW619_0618 NC_010501.1 674961 676121 D PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: pen:PSEEN4822 D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5 (precursor); serine-type D-Ala-D-Ala carboxypeptidase 674961..676121 Pseudomonas putida W619 6109527 YP_001747493.1 CDS PputW619_0619 NC_010501.1 676194 676469 D PFAM: protein of unknown function DUF493; KEGG: pen:PSEEN4821 hypothetical protein; hypothetical protein 676194..676469 Pseudomonas putida W619 6109528 YP_001747494.1 CDS lipB NC_010501.1 676469 677116 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 676469..677116 Pseudomonas putida W619 6109529 YP_001747495.1 CDS PputW619_0621 NC_010501.1 677119 678135 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 677119..678135 Pseudomonas putida W619 6109530 YP_001747496.1 CDS PputW619_0622 NC_010501.1 678222 679160 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pen:PSEEN4818 muramoyltetrapeptide carboxypeptidase; peptidase U61 LD-carboxypeptidase A 678222..679160 Pseudomonas putida W619 6109531 YP_001747497.1 CDS PputW619_0623 NC_010501.1 679269 680585 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pen:PSEEN4817 membrane-bound lytic murein transglycosylase; lytic murein transglycosylase complement(679269..680585) Pseudomonas putida W619 6109532 YP_001747498.1 CDS PputW619_0624 NC_010501.1 680646 680810 R PFAM: protein of unknown function DUF331; KEGG: pen:PSEEN4816 hypothetical protein; hypothetical protein complement(680646..680810) Pseudomonas putida W619 6109533 YP_001747499.1 CDS holA NC_010501.1 680933 681988 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(680933..681988) Pseudomonas putida W619 6109534 YP_001747500.1 CDS PputW619_0626 NC_010501.1 682008 682613 R PFAM: Rare lipoprotein B; KEGG: pen:PSEEN4814 lipoprotein, rare lipoprotein B family; rare lipoprotein B complement(682008..682613) Pseudomonas putida W619 6109535 YP_001747501.1 CDS leuS NC_010501.1 682675 685281 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(682675..685281) Pseudomonas putida W619 6109536 YP_001747502.1 CDS PputW619_0628 NC_010501.1 685509 685823 D KEGG: pen:PSEEN4812 hypothetical protein; hypothetical protein 685509..685823 Pseudomonas putida W619 6109537 YP_001747503.1 CDS PputW619_0629 NC_010501.1 685958 686719 D PFAM: protein of unknown function DUF218; KEGG: pen:PSEEN4811 hypothetical protein; hypothetical protein 685958..686719 Pseudomonas putida W619 6109538 YP_001747504.1 CDS lnt NC_010501.1 686863 688380 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(686863..688380) Pseudomonas putida W619 6109539 YP_001747505.1 CDS PputW619_0631 NC_010501.1 688389 689228 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: pen:PSEEN4809 magnesium and cobalt efflux protein CorC; hypothetical protein complement(688389..689228) Pseudomonas putida W619 6109540 YP_001747506.1 CDS PputW619_0632 NC_010501.1 689254 689727 R PFAM: protein of unknown function UPF0054; KEGG: pen:PSEEN4808 hypothetical protein; putative metalloprotease complement(689254..689727) Pseudomonas putida W619 6109541 YP_001747507.1 CDS PputW619_0633 NC_010501.1 689720 690718 R PFAM: PhoH family protein; KEGG: pen:PSEEN4807 phosphate starvation-inducible protein (PhoH-like); PhoH family protein complement(689720..690718) Pseudomonas putida W619 6109542 YP_001747508.1 CDS PputW619_0634 NC_010501.1 690840 691208 D PFAM: Domain of unknown function DUF1820; KEGG: pfl:PFL_5431 hypothetical protein; hypothetical protein 690840..691208 Pseudomonas putida W619 6109543 YP_001747509.1 CDS PputW619_0635 NC_010501.1 691215 691760 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4805 hypothetical protein; Sel1 domain-containing protein complement(691215..691760) Pseudomonas putida W619 6109544 YP_001747510.1 CDS PputW619_0636 NC_010501.1 691948 693231 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(691948..693231) Pseudomonas putida W619 6109545 YP_001747511.1 CDS thiE NC_010501.1 693249 693872 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(693249..693872) Pseudomonas putida W619 6109546 YP_001747512.1 CDS PputW619_0638 NC_010501.1 693887 694711 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(693887..694711) Pseudomonas putida W619 6109547 YP_001747513.1 CDS PputW619_0639 NC_010501.1 694950 696941 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4801 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 694950..696941 Pseudomonas putida W619 6109548 YP_001747514.1 CDS PputW619_0640 NC_010501.1 697040 698719 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN4800 acyl-CoA dehydrogenase (AidB); acyl-CoA dehydrogenase domain-containing protein 697040..698719 Pseudomonas putida W619 6109549 YP_001747515.1 CDS PputW619_0641 NC_010501.1 698788 700251 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 698788..700251 Pseudomonas putida W619 6109550 YP_001747516.1 CDS PputW619_0642 NC_010501.1 700258 700887 D PFAM: pseudouridine synthase; KEGG: pen:PSEEN4798 pseudouridylate synthase; pseudouridine synthase 700258..700887 Pseudomonas putida W619 6109551 YP_001747517.1 CDS PputW619_0643 NC_010501.1 700989 701192 R KEGG: pen:PSEEN4797 hypothetical protein; hypothetical protein complement(700989..701192) Pseudomonas putida W619 6109552 YP_001747518.1 CDS PputW619_0644 NC_010501.1 701225 701701 R PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: pen:PSEEN4796 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(701225..701701) Pseudomonas putida W619 6109553 YP_001747519.1 CDS PputW619_0645 NC_010501.1 702096 702935 D KEGG: pen:PSEEN4795 hypothetical protein; hypothetical protein 702096..702935 Pseudomonas putida W619 6109554 YP_001747520.1 CDS PputW619_0646 NC_010501.1 702939 703808 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pen:PSEEN4794 cation efflux protein; cation diffusion facilitator family transporter complement(702939..703808) Pseudomonas putida W619 6109555 YP_001747521.1 CDS PputW619_0647 NC_010501.1 703834 704253 R KEGG: pen:PSEEN4793 hypothetical protein; hypothetical protein complement(703834..704253) Pseudomonas putida W619 6109556 YP_001747522.1 CDS PputW619_0648 NC_010501.1 704371 706899 D KEGG: pen:PSEEN4792 helicase, ATP-dependent; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB 704371..706899 Pseudomonas putida W619 6109557 YP_001747523.1 CDS PputW619_0649 NC_010501.1 706910 707404 R hypothetical protein complement(706910..707404) Pseudomonas putida W619 6109558 YP_001747524.1 CDS PputW619_0650 NC_010501.1 707481 708137 R PFAM: protein of unknown function UPF0259; KEGG: pen:PSEEN4791 hypothetical protein; hypothetical protein complement(707481..708137) Pseudomonas putida W619 6109559 YP_001747525.1 CDS PputW619_0651 NC_010501.1 708291 709052 D KEGG: pen:PSEEN4790 hypothetical protein; putative periplasmic ligand-binding sensor protein 708291..709052 Pseudomonas putida W619 6109560 YP_001747526.1 CDS PputW619_0652 NC_010501.1 709117 709596 D PFAM: protein of unknown function DUF88; KEGG: pen:PSEEN4789 hypothetical protein; hypothetical protein 709117..709596 Pseudomonas putida W619 6109561 YP_001747527.1 CDS PputW619_0653 NC_010501.1 709743 710663 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4787 transporter; hypothetical protein 709743..710663 Pseudomonas putida W619 6109562 YP_001747528.1 CDS PputW619_0654 NC_010501.1 710719 712038 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN0718 ATP-dependent RNA helicase, DEAD box family (RhlE); DEAD/DEAH box helicase 710719..712038 Pseudomonas putida W619 6109563 YP_001747529.1 CDS PputW619_0655 NC_010501.1 712128 713402 R PFAM: HI0933 family protein; KEGG: pen:PSEEN0719 hypothetical protein; hypothetical protein complement(712128..713402) Pseudomonas putida W619 6109564 YP_001747530.1 CDS PputW619_0656 NC_010501.1 713519 714433 R PFAM: histone deacetylase superfamily; KEGG: pen:PSEEN0720 hydrolase; histone deacetylase family protein; histone deacetylase superfamily protein complement(713519..714433) Pseudomonas putida W619 6109565 YP_001747531.1 CDS PputW619_0657 NC_010501.1 714547 715119 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0723 acetyltransferase, GNAT family; N-acetyltransferase GCN5 714547..715119 Pseudomonas putida W619 6109566 YP_001747532.1 CDS PputW619_0658 NC_010501.1 715211 716080 D KEGG: pen:PSEEN0725 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 715211..716080 Pseudomonas putida W619 6109567 YP_001747533.1 CDS PputW619_0659 NC_010501.1 716077 716667 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0726 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 716077..716667 Pseudomonas putida W619 6109568 YP_001747534.1 CDS PputW619_0660 NC_010501.1 716818 717828 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN0727 oxidoreductase, zinc-binding alcohol dehydrogenase; alcohol dehydrogenase 716818..717828 Pseudomonas putida W619 6109569 YP_001747535.1 CDS PputW619_0661 NC_010501.1 717838 718536 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0729 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(717838..718536) Pseudomonas putida W619 6109570 YP_001747536.1 CDS PputW619_0662 NC_010501.1 718798 720150 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0730 transport protein, MFS superfamily; major facilitator transporter 718798..720150 Pseudomonas putida W619 6109571 YP_001747537.1 CDS PputW619_0663 NC_010501.1 720170 721525 D KEGG: pen:PSEEN0731 D-glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 720170..721525 Pseudomonas putida W619 6109572 YP_001747538.1 CDS PputW619_0664 NC_010501.1 721626 722513 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_3962 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(721626..722513) Pseudomonas putida W619 6109573 YP_001747539.1 CDS PputW619_0665 NC_010501.1 722614 723564 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bur:Bcep18194_B1307 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 722614..723564 Pseudomonas putida W619 6109574 YP_001747540.1 CDS PputW619_0666 NC_010501.1 723730 725073 D TIGRFAM: d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bmu:Bmul_4121 major facilitator superfamily MFS_1; d-galactonate transporter 723730..725073 Pseudomonas putida W619 6109575 YP_001747541.1 CDS PputW619_0667 NC_010501.1 725437 726831 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN0737 amino acid permease; amino acid permease-associated protein 725437..726831 Pseudomonas putida W619 6109576 YP_001747542.1 CDS PputW619_0668 NC_010501.1 726958 727740 D KEGG: pen:PSEEN0738 hypothetical protein; hypothetical protein 726958..727740 Pseudomonas putida W619 6109577 YP_001747543.1 CDS PputW619_0669 NC_010501.1 727737 729056 D KEGG: pen:PSEEN0739 hypothetical protein; hypothetical protein 727737..729056 Pseudomonas putida W619 6109578 YP_001747544.1 CDS PputW619_0670 NC_010501.1 729056 731149 D PFAM: peptidase M50; KEGG: pen:PSEEN0740 membrane zinc metallopeptidase, M50 family; peptidase M50 729056..731149 Pseudomonas putida W619 6109579 YP_001747545.1 CDS PputW619_0671 NC_010501.1 731175 731975 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN0741 hypothetical protein; aspartyl/asparaginyl beta-hydroxylase 731175..731975 Pseudomonas putida W619 6109580 YP_001747546.1 CDS PputW619_0672 NC_010501.1 731963 732946 D KEGG: pen:PSEEN0742 hypothetical protein; hypothetical protein 731963..732946 Pseudomonas putida W619 6109581 YP_001747547.1 CDS PputW619_0673 NC_010501.1 733119 733589 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0743 acetyltransferase, GNAT family; N-acetyltransferase GCN5 733119..733589 Pseudomonas putida W619 6109582 YP_001747548.1 CDS PputW619_0674 NC_010501.1 733645 734232 D PFAM: Tail Collar domain protein; KEGG: pen:PSEEN0745 phage tail collar; tail collar domain-containing protein 733645..734232 Pseudomonas putida W619 6109583 YP_001747549.1 CDS PputW619_0675 NC_010501.1 734363 743563 D SMART: Pyrrolo-quinoline quinone; Parallel beta-helix repeat; KEGG: pen:PSEEN0746 hypothetical protein; Pyrrolo-quinoline quinone 734363..743563 Pseudomonas putida W619 6109584 YP_001747550.1 CDS PputW619_0676 NC_010501.1 743573 745123 D PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0747 efflux outer membrane protein; outer membrane efflux protein 743573..745123 Pseudomonas putida W619 6109585 YP_001747551.1 CDS PputW619_0677 NC_010501.1 745107 745682 R PFAM: adenylylsulfate kinase; KEGG: pen:PSEEN0748 adenosine 5'-phosphosulfate kinase; adenylylsulfate kinase complement(745107..745682) Pseudomonas putida W619 6109586 YP_001747552.1 CDS PputW619_0678 NC_010501.1 745875 747743 R KEGG: pfl:PFL_3844 ATP/GTP-binding protein, putative; ATP/GTP-binding protein complement(745875..747743) Pseudomonas putida W619 6109587 YP_001747553.1 CDS PputW619_0679 NC_010501.1 747768 748151 R PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: pfl:PFL_3843 MazG nucleotide pyrophosphohydrolase domain protein; MazG nucleotide pyrophosphohydrolase complement(747768..748151) Pseudomonas putida W619 6109588 YP_001747554.1 CDS PputW619_0680 NC_010501.1 748742 749794 D PFAM: C-5 cytosine-specific DNA methylase; KEGG: nmn:NMCC_1094 modification methylase (cytosine-specific DNA methylase); C-5 cytosine-specific DNA methylase 748742..749794 Pseudomonas putida W619 6109589 YP_001747555.1 CDS PputW619_0681 NC_010501.1 750205 750942 R KEGG: ter:Tery_4677 hypothetical protein; hypothetical protein complement(750205..750942) Pseudomonas putida W619 6109590 YP_001747556.1 CDS PputW619_0682 NC_010501.1 750929 752032 R PFAM: protein of unknown function DUF262; KEGG: pna:Pnap_4975 protein of unknown function DUF262; hypothetical protein complement(750929..752032) Pseudomonas putida W619 6109591 YP_001747557.1 CDS PputW619_0683 NC_010501.1 752935 753438 R TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: pmb:A9601_04271 hypothetical protein; DNA mismatch endonuclease Vsr complement(752935..753438) Pseudomonas putida W619 6109592 YP_001747558.1 CDS PputW619_0684 NC_010501.1 753456 755477 D KEGG: sfu:Sfum_3853 hypothetical protein; hypothetical protein 753456..755477 Pseudomonas putida W619 6109593 YP_001747559.1 CDS PputW619_0685 NC_010501.1 755884 757008 R KEGG: bur:Bcep18194_B0516 hypothetical protein; hypothetical protein complement(755884..757008) Pseudomonas putida W619 6109594 YP_001747560.1 CDS PputW619_0686 NC_010501.1 757539 758519 R KEGG: pfo:Pfl_0746 phage integrase; phage integrase complement(757539..758519) Pseudomonas putida W619 6109595 YP_001747561.1 CDS PputW619_0687 NC_010501.1 759271 759537 R KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein complement(759271..759537) Pseudomonas putida W619 6109596 YP_001747562.1 CDS PputW619_0688 NC_010501.1 759652 759894 R KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein complement(759652..759894) Pseudomonas putida W619 6109597 YP_001747563.1 CDS PputW619_0689 NC_010501.1 760750 761043 R KEGG: pen:PSEEN0762 hypothetical protein; hypothetical protein complement(760750..761043) Pseudomonas putida W619 6109599 YP_001747564.1 CDS PputW619_0690 NC_010501.1 761194 761442 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(761194..761442) Pseudomonas putida W619 6109600 YP_001747565.1 CDS PputW619_0691 NC_010501.1 761447 761716 R KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein complement(761447..761716) Pseudomonas putida W619 6109601 YP_001747566.1 CDS PputW619_0692 NC_010501.1 762108 762356 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(762108..762356) Pseudomonas putida W619 6109602 YP_001747567.1 CDS PputW619_0693 NC_010501.1 762361 762630 R KEGG: pen:PSEEN0406 hypothetical protein; hypothetical protein complement(762361..762630) Pseudomonas putida W619 6109603 YP_001747568.1 CDS PputW619_0694 NC_010501.1 763303 766113 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN0766 D-lactate deshydrogenase; D-lactate dehydrogenase complement(763303..766113) Pseudomonas putida W619 6109604 YP_001747569.1 CDS lldD NC_010501.1 766187 767332 R flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase complement(766187..767332) Pseudomonas putida W619 6109605 YP_001747570.1 CDS PputW619_0696 NC_010501.1 767396 769066 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pen:PSEEN0768 L-lactate permease; L-lactate transport complement(767396..769066) Pseudomonas putida W619 6109606 YP_001747571.1 CDS PputW619_0697 NC_010501.1 769323 770090 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0769 transcriptional regulator, GntR family; GntR family transcriptional regulator 769323..770090 Pseudomonas putida W619 6109607 YP_001747572.1 CDS smpB NC_010501.1 770266 770748 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(770266..770748) Pseudomonas putida W619 6109608 YP_001747573.1 CDS PputW619_0699 NC_010501.1 770798 770914 D hypothetical protein 770798..770914 Pseudomonas putida W619 6109609 YP_001747574.1 CDS PputW619_0700 NC_010501.1 770911 771345 D PFAM: cyclase/dehydrase; KEGG: pen:PSEEN0771 hypothetical protein; cyclase/dehydrase 770911..771345 Pseudomonas putida W619 6109610 YP_001747575.1 CDS PputW619_0701 NC_010501.1 771407 771943 R PFAM: SmpA/OmlA domain protein; KEGG: pen:PSEEN0773 outer membrane lipoprotein OmlA; SmpA/OmlA domain-containing protein complement(771407..771943) Pseudomonas putida W619 6109611 YP_001747576.1 CDS PputW619_0702 NC_010501.1 772041 772445 D PFAM: ferric-uptake regulator; KEGG: pen:PSEEN0775 transcriptional repressor for ferric uptake; ferric uptake regulator family protein 772041..772445 Pseudomonas putida W619 6109612 YP_001747577.1 CDS PputW619_0703 NC_010501.1 772558 774231 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pen:PSEEN0776 DNA repair protein RecN; DNA repair protein RecN complement(772558..774231) Pseudomonas putida W619 6109613 YP_001747578.1 CDS PputW619_0704 NC_010501.1 774423 774977 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 774423..774977 Pseudomonas putida W619 6109614 YP_001747579.1 CDS dnaK NC_010501.1 775079 777007 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 775079..777007 Pseudomonas putida W619 6109615 YP_001747580.1 CDS PputW619_0706 NC_010501.1 777205 778329 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 777205..778329 Pseudomonas putida W619 6109616 YP_001747581.1 CDS PputW619_0707 NC_010501.1 778343 779146 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 778343..779146 Pseudomonas putida W619 6109617 YP_001747582.1 CDS PputW619_0708 NC_010501.1 779496 780656 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 779496..780656 Pseudomonas putida W619 6109618 YP_001747583.1 CDS carB NC_010501.1 780762 783983 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 780762..783983 Pseudomonas putida W619 6109619 YP_001747584.1 CDS greA NC_010501.1 783980 784462 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 783980..784462 Pseudomonas putida W619 6109620 YP_001747585.1 CDS PputW619_0711 NC_010501.1 784440 784889 D KEGG: pen:PSEEN0784 hypothetical protein; hypothetical protein 784440..784889 Pseudomonas putida W619 6109621 YP_001747586.1 CDS PputW619_0712 NC_010501.1 784902 785210 R PFAM: protein of unknown function UPF0044; KEGG: pen:PSEEN0785 hypothetical protein; hypothetical protein complement(784902..785210) Pseudomonas putida W619 6109622 YP_001747587.1 CDS PputW619_0713 NC_010501.1 785313 785939 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pen:PSEEN0786 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent; ribosomal RNA methyltransferase RrmJ/FtsJ 785313..785939 Pseudomonas putida W619 6109623 YP_001747588.1 CDS PputW619_0714 NC_010501.1 786143 788047 D KEGG: pen:PSEEN0787 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 786143..788047 Pseudomonas putida W619 6109624 YP_001747589.1 CDS PputW619_0715 NC_010501.1 788056 788907 D KEGG: pen:PSEEN0788 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 788056..788907 Pseudomonas putida W619 6109625 YP_001747590.1 CDS glmM NC_010501.1 788924 790264 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 788924..790264 Pseudomonas putida W619 6109626 YP_001747591.1 CDS tpiA NC_010501.1 790331 791086 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 790331..791086 Pseudomonas putida W619 6109627 YP_001747592.1 CDS secG NC_010501.1 791091 791483 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pen:PSEEN0792 preprotein translocase SecG subunit; preprotein translocase subunit SecG 791091..791483 Pseudomonas putida W619 6109628 YP_001747593.1 CDS PputW619_0719 NC_010501.1 791845 792354 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 791845..792354 Pseudomonas putida W619 6109631 YP_001747594.1 CDS nusA NC_010501.1 792414 793895 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 792414..793895 Pseudomonas putida W619 6109632 YP_001747595.1 CDS infB NC_010501.1 793923 796454 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 793923..796454 Pseudomonas putida W619 6109633 YP_001747596.1 CDS rbfA NC_010501.1 796570 796968 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 796570..796968 Pseudomonas putida W619 6109634 YP_001747597.1 CDS truB NC_010501.1 796972 797889 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 796972..797889 Pseudomonas putida W619 6109635 YP_001747598.1 CDS rpsO NC_010501.1 798036 798305 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 798036..798305 Pseudomonas putida W619 6109636 YP_001747599.1 CDS PputW619_0725 NC_010501.1 798557 800662 D KEGG: pen:PSEEN0799 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 798557..800662 Pseudomonas putida W619 6109637 YP_001747600.1 CDS PputW619_0726 NC_010501.1 800928 801281 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_4184 osmotically inducible protein, puative; transport-associated 800928..801281 Pseudomonas putida W619 6109638 YP_001747601.1 CDS PputW619_0727 NC_010501.1 801359 801661 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4742 hypothetical protein; antibiotic biosynthesis monooxygenase complement(801359..801661) Pseudomonas putida W619 6109639 YP_001747602.1 CDS PputW619_0728 NC_010501.1 801722 802135 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN4741 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 801722..802135 Pseudomonas putida W619 6109640 YP_001747603.1 CDS PputW619_0729 NC_010501.1 802270 805206 R PFAM: protein of unknown function DUF748; KEGG: pen:PSEEN4740 hypothetical protein; hypothetical protein complement(802270..805206) Pseudomonas putida W619 6109641 YP_001747604.1 CDS PputW619_0730 NC_010501.1 805287 806156 R KEGG: pen:PSEEN4739 hypothetical protein; hypothetical protein complement(805287..806156) Pseudomonas putida W619 6109642 YP_001747605.1 CDS PputW619_0731 NC_010501.1 806199 808133 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(806199..808133) Pseudomonas putida W619 6109643 YP_001747606.1 CDS pgi NC_010501.1 808263 809927 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(808263..809927) Pseudomonas putida W619 6109644 YP_001747607.1 CDS panC NC_010501.1 810071 810934 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(810071..810934) Pseudomonas putida W619 6109645 YP_001747608.1 CDS panB NC_010501.1 810931 811731 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(810931..811731) Pseudomonas putida W619 6109646 YP_001747609.1 CDS PputW619_0735 NC_010501.1 811995 812474 R KEGG: pen:PSEEN4734 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(811995..812474) Pseudomonas putida W619 6109647 YP_001747610.1 CDS PputW619_0736 NC_010501.1 812471 813859 R KEGG: pen:PSEEN4733 poly(A) polymerase I (PAP); TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(812471..813859) Pseudomonas putida W619 6109648 YP_001747611.1 CDS PputW619_0737 NC_010501.1 814636 816075 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4730 response regulator CbrB; Fis family two component sigma-54 specific transcriptional regulator complement(814636..816075) Pseudomonas putida W619 6109649 YP_001747612.1 CDS PputW619_0738 NC_010501.1 816080 819055 R TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: pen:PSEEN4729 sensory box histidine kinase CrbA; multi-sensor signal transduction histidine kinase complement(816080..819055) Pseudomonas putida W619 6109650 YP_001747613.1 CDS PputW619_0739 NC_010501.1 819039 819215 R KEGG: pen:PSEEN4728 hypothetical protein; hypothetical protein complement(819039..819215) Pseudomonas putida W619 6109651 YP_001747614.1 CDS PputW619_0740 NC_010501.1 819398 820285 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase complement(819398..820285) Pseudomonas putida W619 6109652 YP_001747615.1 CDS PputW619_0741 NC_010501.1 820349 820792 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN4726 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator complement(820349..820792) Pseudomonas putida W619 6109653 YP_001747616.1 CDS PputW619_0742 NC_010501.1 821003 822175 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN4725 aminotransferase, class I; hypothetical protein 821003..822175 Pseudomonas putida W619 6109654 YP_001747617.1 CDS PputW619_0743 NC_010501.1 822175 822888 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 822175..822888 Pseudomonas putida W619 6109655 YP_001747618.1 CDS PputW619_0744 NC_010501.1 822878 823195 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN4723 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein complement(822878..823195) Pseudomonas putida W619 6109656 YP_001747619.1 CDS PputW619_0745 NC_010501.1 823345 824229 D PFAM: periplasmic binding protein; KEGG: pen:PSEEN4722 ABC transporter, periplasmic binding protein; periplasmic binding protein 823345..824229 Pseudomonas putida W619 6109657 YP_001747620.1 CDS PputW619_0746 NC_010501.1 824226 825263 D PFAM: transport system permease protein; ABC-3 protein; KEGG: pen:PSEEN4721 ABC transporter, permease component; transport system permease 824226..825263 Pseudomonas putida W619 6109658 YP_001747621.1 CDS hmuV NC_010501.1 825263 826030 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 825263..826030 Pseudomonas putida W619 6109659 YP_001747622.1 CDS PputW619_0748 NC_010501.1 826043 826930 D PFAM: protein of unknown function DUF399; KEGG: pen:PSEEN4719 hypothetical protein; hypothetical protein 826043..826930 Pseudomonas putida W619 6109660 YP_001747623.1 CDS PputW619_0749 NC_010501.1 827132 827410 R PFAM: TfoX domain protein; KEGG: pen:PSEEN4718 hypothetical protein; TfoX domain-containing protein complement(827132..827410) Pseudomonas putida W619 6109661 YP_001747624.1 CDS PputW619_0750 NC_010501.1 827588 829150 R KEGG: pen:PSEEN4716 hypothetical protein; hypothetical protein complement(827588..829150) Pseudomonas putida W619 6109662 YP_001747625.1 CDS PputW619_0751 NC_010501.1 829268 831589 D KEGG: pen:PSEEN4715 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B 829268..831589 Pseudomonas putida W619 6109663 YP_001747626.1 CDS PputW619_0752 NC_010501.1 831617 832393 D KEGG: pen:PSEEN4714 hypothetical protein; hypothetical protein 831617..832393 Pseudomonas putida W619 6109664 YP_001747627.1 CDS PputW619_0753 NC_010501.1 832393 832719 D PFAM: protein of unknown function DUF446; KEGG: pen:PSEEN4713 hypothetical protein; hypothetical protein 832393..832719 Pseudomonas putida W619 6109665 YP_001747628.1 CDS PputW619_0754 NC_010501.1 833134 834858 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 833134..834858 Pseudomonas putida W619 6109666 YP_001747629.1 CDS ilvH NC_010501.1 834860 835351 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 834860..835351 Pseudomonas putida W619 6109667 YP_001747630.1 CDS PputW619_0756 NC_010501.1 835406 836422 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 835406..836422 Pseudomonas putida W619 6109668 YP_001747631.1 CDS PputW619_0757 NC_010501.1 836573 837424 D KEGG: pen:PSEEN4708 phosphatidylserine synthase PssA; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 836573..837424 Pseudomonas putida W619 6109669 YP_001747632.1 CDS PputW619_0758 NC_010501.1 837501 838514 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 837501..838514 Pseudomonas putida W619 6109670 YP_001747633.1 CDS PputW619_0759 NC_010501.1 838514 839128 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 838514..839128 Pseudomonas putida W619 6109671 YP_001747634.1 CDS PputW619_0760 NC_010501.1 844995 848471 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: pen:PSEEN0691 exonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma 844995..848471 Pseudomonas putida W619 6109677 YP_001747635.1 CDS PputW619_0761 NC_010501.1 848468 852139 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pen:PSEEN0692 exonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 848468..852139 Pseudomonas putida W619 6109678 YP_001747636.1 CDS PputW619_0762 NC_010501.1 852136 854211 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pen:PSEEN0693 exonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 852136..854211 Pseudomonas putida W619 6109679 YP_001747637.1 CDS PputW619_0763 NC_010501.1 854341 854886 D KEGG: pen:PSEEN0695 hypothetical protein; hypothetical protein 854341..854886 Pseudomonas putida W619 6109680 YP_001747638.1 CDS PputW619_0764 NC_010501.1 854883 856157 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0696 hypothetical protein; diguanylate cyclase 854883..856157 Pseudomonas putida W619 6109681 YP_001747639.1 CDS PputW619_0765 NC_010501.1 856161 856652 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0697 outer membrane lipoprotein (OmpA domain); OmpA/MotB domain-containing protein 856161..856652 Pseudomonas putida W619 6109682 YP_001747640.1 CDS PputW619_0766 NC_010501.1 856766 857782 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0698 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(856766..857782) Pseudomonas putida W619 6109683 YP_001747641.1 CDS PputW619_0767 NC_010501.1 857849 859375 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0699 methylmalonate-semialdehyde dehydrogenase, oxidoreductase protein; methylmalonate-semialdehyde dehydrogenase 857849..859375 Pseudomonas putida W619 6109684 YP_001747642.1 CDS PputW619_0768 NC_010501.1 859386 860273 D KEGG: pen:PSEEN0700 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 859386..860273 Pseudomonas putida W619 6109685 YP_001747643.1 CDS PputW619_0769 NC_010501.1 860780 861757 R KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein complement(860780..861757) Pseudomonas putida W619 6109686 YP_001747644.1 CDS PputW619_0770 NC_010501.1 861768 862256 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_1885 hypothetical protein; Hcp1 family type VI secretion system effector complement(861768..862256) Pseudomonas putida W619 6109687 YP_001747645.1 CDS PputW619_0771 NC_010501.1 862496 862840 R PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN0704 hypothetical protein; hypothetical protein complement(862496..862840) Pseudomonas putida W619 6109688 YP_001747646.1 CDS PputW619_0772 NC_010501.1 862966 863850 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_0715 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(862966..863850) Pseudomonas putida W619 6109689 YP_001747647.1 CDS PputW619_0773 NC_010501.1 863917 864693 D PFAM: protein of unknown function DUF81; KEGG: pfo:Pfl_0716 protein of unknown function DUF81; hypothetical protein 863917..864693 Pseudomonas putida W619 6109690 YP_001747648.1 CDS PputW619_0774 NC_010501.1 864683 864997 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN0713 hypothetical protein; antibiotic biosynthesis monooxygenase complement(864683..864997) Pseudomonas putida W619 6109691 YP_001747649.1 CDS PputW619_0775 NC_010501.1 865155 865745 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pen:PSEEN0714 probable nitroreductase or quinone reductase; NAD(P)H dehydrogenase 865155..865745 Pseudomonas putida W619 6109692 YP_001747650.1 CDS PputW619_0776 NC_010501.1 865835 866731 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0715 transcriptional regulator, LysR family; LysR family transcriptional regulator 865835..866731 Pseudomonas putida W619 6109693 YP_001747651.1 CDS PputW619_0777 NC_010501.1 866849 868516 D KEGG: pen:PSEEN0716 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 866849..868516 Pseudomonas putida W619 6109694 YP_001747652.1 CDS PputW619_0778 NC_010501.1 868646 870565 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0717 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(868646..870565) Pseudomonas putida W619 6109695 YP_001747653.1 CDS PputW619_0779 NC_010501.1 870753 871637 R PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: pen:PSEEN4786 zinc-dependent peptidase (neutral); hypothetical protein complement(870753..871637) Pseudomonas putida W619 6109696 YP_001747654.1 CDS PputW619_0780 NC_010501.1 871826 872545 D TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: pen:PSEEN4784 protocatechuate 3,4-dioxygenase beta chain (3,4-PCD); protocatechuate 3,4-dioxygenase subunit beta 871826..872545 Pseudomonas putida W619 6109697 YP_001747655.1 CDS PputW619_0781 NC_010501.1 872556 873161 D KEGG: pen:PSEEN4783 protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD); TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 872556..873161 Pseudomonas putida W619 6109698 YP_001747656.1 CDS PputW619_0782 NC_010501.1 873196 873630 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN4782 hypothetical protein; cupin complement(873196..873630) Pseudomonas putida W619 6109699 YP_001747657.1 CDS PputW619_0783 NC_010501.1 873735 874640 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4781 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(873735..874640) Pseudomonas putida W619 6109700 YP_001747658.1 CDS PputW619_0784 NC_010501.1 874699 875784 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(874699..875784) Pseudomonas putida W619 6109701 YP_001747659.1 CDS PputW619_0785 NC_010501.1 875781 877076 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN4779 transporter; xanthine/uracil/vitamin C permease complement(875781..877076) Pseudomonas putida W619 6109702 YP_001747660.1 CDS PputW619_0786 NC_010501.1 877231 878451 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4778 transporter, MFS family; major facilitator transporter complement(877231..878451) Pseudomonas putida W619 6109703 YP_001747661.1 CDS PputW619_0787 NC_010501.1 878798 880234 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pen:PSEEN4777 ubiquinol oxidase subunit I, cyanide insensitive; cytochrome bd ubiquinol oxidase subunit I 878798..880234 Pseudomonas putida W619 6109704 YP_001747662.1 CDS PputW619_0788 NC_010501.1 880238 881245 D TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: pen:PSEEN4776 ubiquinol oxidase subunit II, cyanide insensitive; cytochrome d ubiquinol oxidase subunit II 880238..881245 Pseudomonas putida W619 6109705 YP_001747663.1 CDS PputW619_0789 NC_010501.1 881257 881409 D KEGG: pen:PSEEN4775 hypothetical protein; hypothetical protein 881257..881409 Pseudomonas putida W619 6109706 YP_001747664.1 CDS PputW619_0790 NC_010501.1 881442 882566 R PFAM: methyltransferase small; KEGG: pen:PSEEN4774 nucleotide methyltransferase; rRNA (guanine-N(2)-)-methyltransferase complement(881442..882566) Pseudomonas putida W619 6109707 YP_001747665.1 CDS PputW619_0791 NC_010501.1 882659 883369 R PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: pen:PSEEN4773 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(882659..883369) Pseudomonas putida W619 6109708 YP_001747666.1 CDS PputW619_0792 NC_010501.1 883581 884357 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4772 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit 883581..884357 Pseudomonas putida W619 6109709 YP_001747667.1 CDS mscL NC_010501.1 884434 884853 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(884434..884853) Pseudomonas putida W619 6109710 YP_001747668.1 CDS PputW619_0794 NC_010501.1 884965 886398 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 884965..886398 Pseudomonas putida W619 6109711 YP_001747669.1 CDS PputW619_0795 NC_010501.1 886495 888012 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0801 xanthine/uracil permease; xanthine permease complement(886495..888012) Pseudomonas putida W619 6109712 YP_001747670.1 CDS PputW619_0796 NC_010501.1 888276 888641 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN0802 hypothetical protein; type IV pilus assembly PilZ complement(888276..888641) Pseudomonas putida W619 6109713 YP_001747671.1 CDS PputW619_0797 NC_010501.1 888754 889389 R PFAM: chitin-binding domain 3 protein; KEGG: fal:FRAAL0124 putative chitin-binding protein (partial match); chitin-binding domain-containing protein complement(888754..889389) Pseudomonas putida W619 6109714 YP_001747672.1 CDS PputW619_0798 NC_010501.1 889706 891772 D PFAM: carbon starvation protein CstA; KEGG: pen:PSEEN0803 carbon starvation protein CstA; carbon starvation protein CstA 889706..891772 Pseudomonas putida W619 6109715 YP_001747673.1 CDS PputW619_0799 NC_010501.1 891786 891983 D PFAM: protein of unknown function DUF466; KEGG: pen:PSEEN0804 hypothetical protein; hypothetical protein 891786..891983 Pseudomonas putida W619 6109716 YP_001747674.1 CDS PputW619_0800 NC_010501.1 892056 893033 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN0805 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K 892056..893033 Pseudomonas putida W619 6109717 YP_001747675.1 CDS PputW619_0801 NC_010501.1 892969 894480 R PFAM: methylenetetrahydrofolate reductase; KEGG: pen:PSEEN4641 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase complement(892969..894480) Pseudomonas putida W619 6109718 YP_001747676.1 CDS PputW619_0802 NC_010501.1 894696 896996 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 894696..896996 Pseudomonas putida W619 6109719 YP_001747677.1 CDS PputW619_0803 NC_010501.1 897071 898249 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(897071..898249) Pseudomonas putida W619 6109720 YP_001747678.1 CDS PputW619_0804 NC_010501.1 898572 899771 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 898572..899771 Pseudomonas putida W619 6109721 YP_001747679.1 CDS PputW619_0805 NC_010501.1 899861 900769 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4626 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 899861..900769 Pseudomonas putida W619 6109722 YP_001747680.1 CDS PputW619_0806 NC_010501.1 900794 901135 R PFAM: HopJ type III effector protein; KEGG: pfl:PFL_0946 type III effector HopPmaJ; HopJ type III effector protein complement(900794..901135) Pseudomonas putida W619 6109723 YP_001747681.1 CDS PputW619_0807 NC_010501.1 901128 901424 R PFAM: protein of unknown function DUF1244; KEGG: pen:PSEEN4624 hypothetical protein; hypothetical protein complement(901128..901424) Pseudomonas putida W619 6109724 YP_001747682.1 CDS PputW619_0808 NC_010501.1 901434 902126 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN4623 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase complement(901434..902126) Pseudomonas putida W619 6109725 YP_001747683.1 CDS PputW619_0809 NC_010501.1 902204 902764 R KEGG: pen:PSEEN4622 hypothetical protein; hypothetical protein complement(902204..902764) Pseudomonas putida W619 6109726 YP_001747684.1 CDS PputW619_0810 NC_010501.1 902983 903915 D PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator 902983..903915 Pseudomonas putida W619 6109727 YP_001747685.1 CDS PputW619_0811 NC_010501.1 903900 904517 R KEGG: pen:PSEEN4621 hypothetical protein; hypothetical protein complement(903900..904517) Pseudomonas putida W619 6109728 YP_001747686.1 CDS PputW619_0812 NC_010501.1 904564 905022 R KEGG: pfl:PFL_0954 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein complement(904564..905022) Pseudomonas putida W619 6109729 YP_001747687.1 CDS PputW619_0813 NC_010501.1 905106 905561 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 905106..905561 Pseudomonas putida W619 6109730 YP_001747688.1 CDS PputW619_0814 NC_010501.1 905767 906672 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4616 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 905767..906672 Pseudomonas putida W619 6109731 YP_001747689.1 CDS PputW619_0815 NC_010501.1 906786 907706 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4615 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 906786..907706 Pseudomonas putida W619 6109732 YP_001747690.1 CDS PputW619_0816 NC_010501.1 908004 908786 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN4613 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(908004..908786) Pseudomonas putida W619 6109733 YP_001747691.1 CDS PputW619_0817 NC_010501.1 908900 910201 D An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 908900..910201 Pseudomonas putida W619 6109734 YP_001747692.1 CDS PputW619_0818 NC_010501.1 910205 911497 D KEGG: pen:PSEEN4611 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969; fumarylacetoacetase 910205..911497 Pseudomonas putida W619 6109735 YP_001747693.1 CDS PputW619_0819 NC_010501.1 911510 912142 D TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4610 maleylacetoacetate isomerase; maleylacetoacetate isomerase 911510..912142 Pseudomonas putida W619 6109736 YP_001747694.1 CDS PputW619_0820 NC_010501.1 912136 912942 R KEGG: pen:PSEEN4608 hypothetical protein; hypothetical protein complement(912136..912942) Pseudomonas putida W619 6109737 YP_001747695.1 CDS PputW619_0821 NC_010501.1 913068 914087 D PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: pen:PSEEN4606 leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 913068..914087 Pseudomonas putida W619 6109738 YP_001747696.1 CDS PputW619_0822 NC_010501.1 914115 914378 R PFAM: YebG family protein; KEGG: pen:PSEEN4605 hypothetical protein; hypothetical protein complement(914115..914378) Pseudomonas putida W619 6109739 YP_001747697.1 CDS PputW619_0823 NC_010501.1 914606 914890 D KEGG: pen:PSEEN4603 hypothetical protein; hypothetical protein 914606..914890 Pseudomonas putida W619 6109740 YP_001747698.1 CDS PputW619_0824 NC_010501.1 914928 915401 D PFAM: phosphate-starvation-inducible E; KEGG: pen:PSEEN4603 hypothetical protein; phosphate-starvation-inducible E 914928..915401 Pseudomonas putida W619 6109741 YP_001747699.1 CDS PputW619_0825 NC_010501.1 915538 916704 D KEGG: sbn:Sbal195_0804 hypothetical protein; hypothetical protein 915538..916704 Pseudomonas putida W619 6109742 YP_001747700.1 CDS PputW619_0826 NC_010501.1 916712 917440 D KEGG: pat:Patl_0675 hypothetical protein; hypothetical protein 916712..917440 Pseudomonas putida W619 6109743 YP_001747701.1 CDS PputW619_0827 NC_010501.1 917559 918251 R hypothetical protein complement(917559..918251) Pseudomonas putida W619 6109744 YP_001747702.1 CDS PputW619_0828 NC_010501.1 918998 919864 D hypothetical protein 918998..919864 Pseudomonas putida W619 6109745 YP_001747703.1 CDS PputW619_0829 NC_010501.1 919880 920251 D hypothetical protein 919880..920251 Pseudomonas putida W619 6109746 YP_001747704.1 CDS PputW619_0830 NC_010501.1 920304 920969 D hypothetical protein 920304..920969 Pseudomonas putida W619 6109747 YP_001747705.1 CDS PputW619_0831 NC_010501.1 921112 921609 D hypothetical protein 921112..921609 Pseudomonas putida W619 6109748 YP_001747706.1 CDS PputW619_0832 NC_010501.1 922274 923641 R PFAM: Relaxase/mobilization nuclease family protein; KEGG: bcz:pE33L54_0050 relaxase; relaxase/mobilization nuclease family protein complement(922274..923641) Pseudomonas putida W619 6109749 YP_001747707.1 CDS PputW619_0833 NC_010501.1 923692 924060 R PFAM: mobilisation protein; mobilisation protein complement(923692..924060) Pseudomonas putida W619 6109750 YP_001747708.1 CDS PputW619_0834 NC_010501.1 924117 924464 R hypothetical protein complement(924117..924464) Pseudomonas putida W619 6109751 YP_001747709.1 CDS PputW619_0835 NC_010501.1 924824 926470 R PFAM: Resolvase domain; KEGG: mlo:mlr4668 site-specific recombinase; resolvase domain-containing protein complement(924824..926470) Pseudomonas putida W619 6109752 YP_001747710.1 CDS PputW619_0836 NC_010501.1 926583 926882 D KEGG: pen:PSEEN4603 hypothetical protein; hypothetical protein 926583..926882 Pseudomonas putida W619 6109753 YP_001747711.1 CDS PputW619_0837 NC_010501.1 926886 927176 R KEGG: pen:PSEEN4602 hypothetical protein; hypothetical protein complement(926886..927176) Pseudomonas putida W619 6109754 YP_001747712.1 CDS PputW619_0838 NC_010501.1 927352 929307 D KEGG: pen:PSEEN0657 hypothetical protein; hypothetical protein 927352..929307 Pseudomonas putida W619 6109755 YP_001747713.1 CDS PputW619_0839 NC_010501.1 929292 931937 R KEGG: pen:PSEEN0656 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(929292..931937) Pseudomonas putida W619 6109756 YP_001747714.1 CDS PputW619_0840 NC_010501.1 931934 932374 R PFAM: TadE family protein; KEGG: pen:PSEEN0655 hypothetical protein; TadE family protein complement(931934..932374) Pseudomonas putida W619 6109757 YP_001747715.1 CDS PputW619_0841 NC_010501.1 932444 932884 D PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV 932444..932884 Pseudomonas putida W619 6109758 YP_001747716.1 CDS PputW619_0842 NC_010501.1 932900 933163 R KEGG: pen:PSEEN0652 hypothetical protein; hypothetical protein complement(932900..933163) Pseudomonas putida W619 6109759 YP_001747717.1 CDS PputW619_0843 NC_010501.1 933179 933880 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0651 hypothetical protein; hypothetical protein complement(933179..933880) Pseudomonas putida W619 6109760 YP_001747718.1 CDS PputW619_0844 NC_010501.1 933891 934778 R PFAM: type II secretion system protein; KEGG: pen:PSEEN0650 type II/IV secretion system membrane protein; type II secretion system protein complement(933891..934778) Pseudomonas putida W619 6109761 YP_001747719.1 CDS PputW619_0845 NC_010501.1 934781 935662 R PFAM: type II secretion system protein; KEGG: pen:PSEEN0649 type II/IV secretion system membrane protein; type II secretion system protein complement(934781..935662) Pseudomonas putida W619 6109762 YP_001747720.1 CDS PputW619_0846 NC_010501.1 935659 936915 R PFAM: type II secretion system protein E; KEGG: pen:PSEEN0648 type II/IV secretion system protein E; type II secretion system protein E complement(935659..936915) Pseudomonas putida W619 6109763 YP_001747721.1 CDS PputW619_0847 NC_010501.1 936912 938102 R KEGG: pen:PSEEN0647 hypothetical protein; hypothetical protein complement(936912..938102) Pseudomonas putida W619 6109764 YP_001747722.1 CDS PputW619_0848 NC_010501.1 938099 939358 R PFAM: type II and III secretion system protein; KEGG: pen:PSEEN0646 type II/IV secretion system protein D; type II and III secretion system protein complement(938099..939358) Pseudomonas putida W619 6109765 YP_001747723.1 CDS PputW619_0849 NC_010501.1 939376 940323 R TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pen:PSEEN0645 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB complement(939376..940323) Pseudomonas putida W619 6109766 YP_001747724.1 CDS PputW619_0850 NC_010501.1 940618 940797 D PFAM: Flp/Fap pilin component; KEGG: pen:PSEEN0642 hypothetical protein; Flp/Fap pilin component 940618..940797 Pseudomonas putida W619 6109767 YP_001747725.1 CDS PputW619_0851 NC_010501.1 940846 941256 D PFAM: response regulator receiver; KEGG: pen:PSEEN0641 response regulator; response regulator receiver protein 940846..941256 Pseudomonas putida W619 6109768 YP_001747726.1 CDS PputW619_0852 NC_010501.1 941326 941673 R KEGG: pen:PSEEN4601 hypothetical protein; hypothetical protein complement(941326..941673) Pseudomonas putida W619 6109769 YP_001747727.1 CDS PputW619_0853 NC_010501.1 941949 942254 D KEGG: pen:PSEEN4570 hypothetical protein; hypothetical protein 941949..942254 Pseudomonas putida W619 6109770 YP_001747728.1 CDS PputW619_0854 NC_010501.1 942251 943831 D PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4569 hypothetical protein; PepSY-associated TM helix domain-containing protein 942251..943831 Pseudomonas putida W619 6109771 YP_001747729.1 CDS PputW619_0855 NC_010501.1 943825 944151 D KEGG: pen:PSEEN4568 hypothetical protein; hypothetical protein 943825..944151 Pseudomonas putida W619 6109772 YP_001747730.1 CDS PputW619_0856 NC_010501.1 944207 944704 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4567 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 944207..944704 Pseudomonas putida W619 6109773 YP_001747731.1 CDS PputW619_0857 NC_010501.1 944701 945687 D PFAM: FecR protein; KEGG: pen:PSEEN4566 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 944701..945687 Pseudomonas putida W619 6109774 YP_001747732.1 CDS PputW619_0858 NC_010501.1 945805 948195 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4565 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 945805..948195 Pseudomonas putida W619 6109775 YP_001747733.1 CDS PputW619_0859 NC_010501.1 948192 949067 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4564 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(948192..949067) Pseudomonas putida W619 6109776 YP_001747734.1 CDS PputW619_0860 NC_010501.1 949284 950180 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4563 hypothetical protein; hypothetical protein 949284..950180 Pseudomonas putida W619 6109777 YP_001747735.1 CDS PputW619_0861 NC_010501.1 950270 951790 D KEGG: pfo:Pfl_4560 hypothetical protein; hypothetical protein 950270..951790 Pseudomonas putida W619 6109778 YP_001747736.1 CDS PputW619_0862 NC_010501.1 951784 952155 D PFAM: GtrA family protein; KEGG: sfv:SFV_0258 bactoprenol-linked glucose translocase; GtrA family protein 951784..952155 Pseudomonas putida W619 6109779 YP_001747737.1 CDS PputW619_0863 NC_010501.1 952152 953090 D PFAM: glycosyl transferase family 2; KEGG: sec:SC4084 putative phage glycosyltransferase; ribonuclease III 952152..953090 Pseudomonas putida W619 6109780 YP_001747738.1 CDS PputW619_0864 NC_010501.1 953131 954105 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4562 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(953131..954105) Pseudomonas putida W619 6109781 YP_001747739.1 CDS PputW619_0865 NC_010501.1 954232 955179 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4561 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(954232..955179) Pseudomonas putida W619 6109782 YP_001747740.1 CDS PputW619_0866 NC_010501.1 955358 956887 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4560 fusaric acid resistance protein; RND efflux system outer membrane lipoprotein 955358..956887 Pseudomonas putida W619 6109783 YP_001747741.1 CDS PputW619_0867 NC_010501.1 956884 959061 D PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN4559 fusaric acid resistance protein; fusaric acid resistance protein region 956884..959061 Pseudomonas putida W619 6109784 YP_001747742.1 CDS PputW619_0868 NC_010501.1 959051 959266 D PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN4558 hypothetical protein; hypothetical protein 959051..959266 Pseudomonas putida W619 6109785 YP_001747743.1 CDS PputW619_0869 NC_010501.1 959277 960146 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4557 HlyD family secretion protein; secretion protein HlyD family protein 959277..960146 Pseudomonas putida W619 6109786 YP_001747744.1 CDS PputW619_0870 NC_010501.1 960169 960615 R PFAM: UspA domain protein; KEGG: pen:PSEEN4556 universal stress protein family; UspA domain-containing protein complement(960169..960615) Pseudomonas putida W619 6109787 YP_001747745.1 CDS PputW619_0871 NC_010501.1 960883 961791 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4555 transcriptional regulator, LysR family; LysR family transcriptional regulator 960883..961791 Pseudomonas putida W619 6109788 YP_001747746.1 CDS PputW619_0872 NC_010501.1 961927 963468 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4554 multidrug efflux MFS transporter; major facilitator transporter 961927..963468 Pseudomonas putida W619 6109789 YP_001747747.1 CDS PputW619_0873 NC_010501.1 963496 964557 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4553 multidrug efflux MFS membrane fusion protein; secretion protein HlyD family protein 963496..964557 Pseudomonas putida W619 6109790 YP_001747748.1 CDS PputW619_0874 NC_010501.1 964554 966005 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4552 multidrug efflux MFS outer membrane protein; RND efflux system outer membrane lipoprotein 964554..966005 Pseudomonas putida W619 6109791 YP_001747749.1 CDS PputW619_0875 NC_010501.1 966022 966432 D KEGG: ilo:IL0083 short chain dehydrogenase/reductase family protein; short chain dehydrogenase/reductase family protein 966022..966432 Pseudomonas putida W619 6109792 YP_001747750.1 CDS PputW619_0876 NC_010501.1 966382 967206 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4551 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase complement(966382..967206) Pseudomonas putida W619 6109793 YP_001747751.1 CDS PputW619_0877 NC_010501.1 967356 967820 R KEGG: pen:PSEEN4547 hypothetical protein; hypothetical protein complement(967356..967820) Pseudomonas putida W619 6109794 YP_001747752.1 CDS PputW619_0878 NC_010501.1 967960 969414 R KEGG: pen:PSEEN4546 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase AlgA; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(967960..969414) Pseudomonas putida W619 6109795 YP_001747753.1 CDS PputW619_0879 NC_010501.1 969452 970099 R KEGG: pen:PSEEN4545 alginate O-acetyltransferase AlgF; alginate O-acetyltransferase AlgF complement(969452..970099) Pseudomonas putida W619 6109796 YP_001747754.1 CDS PputW619_0880 NC_010501.1 970121 971278 R KEGG: pen:PSEEN4544 alginate O-acetylation protein AlgJ precursor; alginate O-acetylation protein AlgJ complement(970121..971278) Pseudomonas putida W619 6109797 YP_001747755.1 CDS PputW619_0881 NC_010501.1 971290 972750 R PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pen:PSEEN4543 alginate O-acetylation protein AlgI; membrane bound O-acyl transferase MBOAT family protein complement(971290..972750) Pseudomonas putida W619 6109798 YP_001747756.1 CDS algL NC_010501.1 972966 974069 R Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase complement(972966..974069) Pseudomonas putida W619 6109799 YP_001747757.1 CDS PputW619_0883 NC_010501.1 974077 975516 R KEGG: pen:PSEEN4541 alginate biosynthesis protein AlgX; alginate biosynthesis protein AlgX complement(974077..975516) Pseudomonas putida W619 6109800 YP_001747758.1 CDS PputW619_0884 NC_010501.1 975530 977089 R SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pen:PSEEN4540 alginate-C5-mannuronan-epimerase AlgG; carbohydrate-binding and sugar hydrolysis protein complement(975530..977089) Pseudomonas putida W619 6109801 YP_001747759.1 CDS PputW619_0885 NC_010501.1 977109 978587 R KEGG: pen:PSEEN4539 outer membrane protein AlgE; outer membrane protein AlgE complement(977109..978587) Pseudomonas putida W619 6109802 YP_001747760.1 CDS PputW619_0886 NC_010501.1 978584 980011 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4538 alginate biosynthesis precursor AlgK; Sel1 domain-containing protein complement(978584..980011) Pseudomonas putida W619 6109803 YP_001747761.1 CDS PputW619_0887 NC_010501.1 980024 981190 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN4537 alginate biosynthesis protein Alg44; type IV pilus assembly PilZ complement(980024..981190) Pseudomonas putida W619 6109804 YP_001747762.1 CDS PputW619_0888 NC_010501.1 981228 982718 R KEGG: pen:PSEEN4536 glycosyl transferase Alg8; glycosyl transferase Alg8 complement(981228..982718) Pseudomonas putida W619 6109805 YP_001747763.1 CDS PputW619_0889 NC_010501.1 982777 984093 R KEGG: pen:PSEEN4535 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(982777..984093) Pseudomonas putida W619 6109806 YP_001747764.1 CDS PputW619_0890 NC_010501.1 985020 985460 D KEGG: plu:plu2640 hypothetical protein; hypothetical protein 985020..985460 Pseudomonas putida W619 6109807 YP_001747765.1 CDS PputW619_0891 NC_010501.1 985577 986371 D KEGG: pst:PSPTO_0243 hypothetical protein; hypothetical protein 985577..986371 Pseudomonas putida W619 6109808 YP_001747766.1 CDS PputW619_0892 NC_010501.1 986368 987033 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfl:PFL_2947 ABC transporter, ATP-binding protein; ABC transporter-like protein 986368..987033 Pseudomonas putida W619 6109809 YP_001747767.1 CDS PputW619_0893 NC_010501.1 987026 988195 D PFAM: protein of unknown function DUF214; KEGG: plu:plu2647 unnamed protein product; highly similar to permease of ABC transporter; hypothetical protein 987026..988195 Pseudomonas putida W619 6109810 YP_001747768.1 CDS PputW619_0894 NC_010501.1 988188 989651 D PFAM: outer membrane efflux protein; KEGG: plu:plu2646 hypothetical protein; outer membrane efflux protein 988188..989651 Pseudomonas putida W619 6109811 YP_001747769.1 CDS PputW619_0895 NC_010501.1 989644 990861 D PFAM: secretion protein HlyD family protein; KEGG: plu:plu2645 hypothetical protein; secretion protein HlyD family protein 989644..990861 Pseudomonas putida W619 6109812 YP_001747770.1 CDS PputW619_0896 NC_010501.1 990930 991709 R PFAM: protein of unknown function DUF328; KEGG: pen:PSEEN4534 hypothetical protein; hypothetical protein complement(990930..991709) Pseudomonas putida W619 6109813 YP_001747771.1 CDS PputW619_0897 NC_010501.1 991846 992973 D PFAM: polysaccharide deacetylase; KEGG: pen:PSEEN4533 polysaccharide deacetylase family protein; polysaccharide deacetylase 991846..992973 Pseudomonas putida W619 6109814 YP_001747772.1 CDS PputW619_0898 NC_010501.1 993255 994649 D PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: pen:PSEEN4531 PhoH family protein; PhoH family protein 993255..994649 Pseudomonas putida W619 6109815 YP_001747773.1 CDS moaC NC_010501.1 994745 995215 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 994745..995215 Pseudomonas putida W619 6109816 YP_001747774.1 CDS PputW619_0900 NC_010501.1 995215 995460 D TIGRFAM: molybdopterin converting factor, subunit 1; MoaD family protein; PFAM: thiamineS protein; KEGG: pen:PSEEN4529 molybdenum cofactor biosynthesis protein D; molybdopterin converting factor subunit 1 995215..995460 Pseudomonas putida W619 6109817 YP_001747775.1 CDS PputW619_0901 NC_010501.1 995463 995909 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pen:PSEEN4528 molybdenum cofactor biosynthesis protein E; molybdopterin biosynthesis MoaE protein 995463..995909 Pseudomonas putida W619 6109818 YP_001747776.1 CDS PputW619_0902 NC_010501.1 996046 997497 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(996046..997497) Pseudomonas putida W619 6109819 YP_001747777.1 CDS PputW619_0903 NC_010501.1 997598 998254 R PFAM: phospholipase/Carboxylesterase; KEGG: pen:PSEEN4526 carboxylesterase; carboxylesterase complement(997598..998254) Pseudomonas putida W619 6109820 YP_001747778.1 CDS PputW619_0904 NC_010501.1 998585 999613 D SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN4525 general amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 998585..999613 Pseudomonas putida W619 6109821 YP_001747779.1 CDS PputW619_0905 NC_010501.1 999681 1000859 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4524 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 999681..1000859 Pseudomonas putida W619 6109822 YP_001747780.1 CDS PputW619_0906 NC_010501.1 1000870 1001967 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4523 general amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 1000870..1001967 Pseudomonas putida W619 6109823 YP_001747781.1 CDS PputW619_0907 NC_010501.1 1001978 1002742 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4522 general amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 1001978..1002742 Pseudomonas putida W619 6109824 YP_001747782.1 CDS PputW619_0908 NC_010501.1 1002842 1004002 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: pen:PSEEN4521 HtrA-like serine protease AlgW; 2-alkenal reductase complement(1002842..1004002) Pseudomonas putida W619 6109825 YP_001747783.1 CDS PputW619_0909 NC_010501.1 1004161 1004919 D PFAM: protein of unknown function DUF34; KEGG: pen:PSEEN4520 hypothetical protein; hypothetical protein 1004161..1004919 Pseudomonas putida W619 6109826 YP_001747784.1 CDS PputW619_0910 NC_010501.1 1005146 1006063 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1005146..1006063 Pseudomonas putida W619 6109827 YP_001747785.1 CDS PputW619_0911 NC_010501.1 1006079 1007980 D in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1006079..1007980 Pseudomonas putida W619 6109828 YP_001747786.1 CDS PputW619_0912 NC_010501.1 1008052 1008789 R KEGG: pfo:Pfl_5397 S-type pyocin; S-type pyocin complement(1008052..1008789) Pseudomonas putida W619 6109829 YP_001747787.1 CDS PputW619_0913 NC_010501.1 1009477 1010001 D hypothetical protein 1009477..1010001 Pseudomonas putida W619 6109830 YP_001747788.1 CDS PputW619_0914 NC_010501.1 1010178 1010657 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4516 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1010178..1010657) Pseudomonas putida W619 6109831 YP_001747789.1 CDS PputW619_0915 NC_010501.1 1010785 1011978 D catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 1010785..1011978 Pseudomonas putida W619 6109832 YP_001747790.1 CDS PputW619_0916 NC_010501.1 1012164 1012601 R PFAM: protein of unknown function DUF1043; KEGG: pen:PSEEN4513 hypothetical protein; hypothetical protein complement(1012164..1012601) Pseudomonas putida W619 6109833 YP_001747791.1 CDS PputW619_0917 NC_010501.1 1012729 1013373 D KEGG: pen:PSEEN4512 hypothetical protein; hypothetical protein 1012729..1013373 Pseudomonas putida W619 6109834 YP_001747792.1 CDS PputW619_0918 NC_010501.1 1013399 1014748 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1013399..1014748 Pseudomonas putida W619 6109835 YP_001747793.1 CDS PputW619_0919 NC_010501.1 1014909 1015928 D PFAM: AFG1-family ATPase; KEGG: pen:PSEEN4510 ATPase; AFG1 family ATPase 1014909..1015928 Pseudomonas putida W619 6109836 YP_001747794.1 CDS PputW619_0920 NC_010501.1 1016088 1017092 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN4509 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1016088..1017092) Pseudomonas putida W619 6109837 YP_001747795.1 CDS PputW619_0921 NC_010501.1 1017232 1018272 R PFAM: aldo/keto reductase; KEGG: pen:PSEEN4508 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(1017232..1018272) Pseudomonas putida W619 6109838 YP_001747796.1 CDS rplM NC_010501.1 1018530 1018958 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1018530..1018958 Pseudomonas putida W619 6109839 YP_001747797.1 CDS rpsI NC_010501.1 1018973 1019365 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1018973..1019365 Pseudomonas putida W619 6109840 YP_001747798.1 CDS PputW619_0924 NC_010501.1 1019629 1020222 D KEGG: pen:PSEEN4505 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1019629..1020222 Pseudomonas putida W619 6109841 YP_001747799.1 CDS PputW619_0925 NC_010501.1 1020219 1021433 D PFAM: Cytochrome b/b6 domain; KEGG: pen:PSEEN4504 ubiquinol--cytochrome c reductase, cytochrome b; cytochrome b/b6 domain-containing protein 1020219..1021433 Pseudomonas putida W619 6109842 YP_001747800.1 CDS PputW619_0926 NC_010501.1 1021433 1022212 D KEGG: pen:PSEEN4503 ubiquinol--cytochrome c reductase, cytochrome c1; ubiquinol--cytochrome c reductase, cytochrome c1 1021433..1022212 Pseudomonas putida W619 6109843 YP_001747801.1 CDS PputW619_0927 NC_010501.1 1022333 1022956 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4502 stringent starvation protein A; glutathione S-transferase domain-containing protein 1022333..1022956 Pseudomonas putida W619 6109844 YP_001747802.1 CDS PputW619_0928 NC_010501.1 1022967 1023398 D PFAM: Stringent starvation protein B; KEGG: pen:PSEEN4501 stringent starvation protein B; ClpXP protease specificity-enhancing factor 1022967..1023398 Pseudomonas putida W619 6109845 YP_001747803.1 CDS PputW619_0929 NC_010501.1 1023449 1023667 R PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN4500 hypothetical protein; hypothetical protein complement(1023449..1023667) Pseudomonas putida W619 6109846 YP_001747804.1 CDS PputW619_0930 NC_010501.1 1023747 1024325 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pen:PSEEN4499 lipoprotein; transport-associated complement(1023747..1024325) Pseudomonas putida W619 6109847 YP_001747805.1 CDS PputW619_0931 NC_010501.1 1024322 1024915 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1024322..1024915) Pseudomonas putida W619 6109848 YP_001747806.1 CDS PputW619_0932 NC_010501.1 1025002 1025373 R PFAM: protein of unknown function UPF0102; KEGG: pen:PSEEN4497 hypothetical protein; hypothetical protein complement(1025002..1025373) Pseudomonas putida W619 6109849 YP_001747807.1 CDS PputW619_0933 NC_010501.1 1025373 1027190 R PFAM: LppC family lipoprotein; KEGG: pen:PSEEN4496 lipoprotein LppC; LppC family lipoprotein complement(1025373..1027190) Pseudomonas putida W619 6109850 YP_001747808.1 CDS PputW619_0934 NC_010501.1 1027378 1028253 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN4495 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase 1027378..1028253 Pseudomonas putida W619 6109851 YP_001747809.1 CDS PputW619_0935 NC_010501.1 1029002 1029457 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1029002..1029457 Pseudomonas putida W619 6109853 YP_001747810.1 CDS mraW NC_010501.1 1029454 1030401 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: pen:PSEEN4493 S-adenosylmethionine methyltransferase MraW; S-adenosyl-methyltransferase MraW 1029454..1030401 Pseudomonas putida W619 6109854 YP_001747811.1 CDS PputW619_0937 NC_010501.1 1030398 1030691 D PFAM: cell division protein FtsL; KEGG: pen:PSEEN4492 cell division protein FtsL; cell division protein FtsL 1030398..1030691 Pseudomonas putida W619 6109855 YP_001747812.1 CDS PputW619_0938 NC_010501.1 1030688 1032424 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pen:PSEEN4491 penicillin-binding protein; peptidoglycan glycosyltransferase 1030688..1032424 Pseudomonas putida W619 6109856 YP_001747813.1 CDS murE NC_010501.1 1032421 1033911 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1032421..1033911 Pseudomonas putida W619 6109857 YP_001747814.1 CDS PputW619_0940 NC_010501.1 1033904 1035271 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pen:PSEEN4489 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme); UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1033904..1035271 Pseudomonas putida W619 6109858 YP_001747815.1 CDS mraY NC_010501.1 1035271 1036353 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1035271..1036353 Pseudomonas putida W619 6109859 YP_001747816.1 CDS murD NC_010501.1 1036360 1037706 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1036360..1037706 Pseudomonas putida W619 6109860 YP_001747817.1 CDS PputW619_0943 NC_010501.1 1037703 1038917 D TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pen:PSEEN4486 cell division protein, stabililzes FtsZ ring; cell division protein FtsW 1037703..1038917 Pseudomonas putida W619 6109861 YP_001747818.1 CDS murG NC_010501.1 1038907 1039986 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1038907..1039986 Pseudomonas putida W619 6109862 YP_001747819.1 CDS murC NC_010501.1 1039979 1041427 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1039979..1041427 Pseudomonas putida W619 6109863 YP_001747820.1 CDS ddl NC_010501.1 1041424 1042380 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1041424..1042380 Pseudomonas putida W619 6109864 YP_001747821.1 CDS PputW619_0947 NC_010501.1 1042387 1043256 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pen:PSEEN4482 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 1042387..1043256 Pseudomonas putida W619 6109865 YP_001747822.1 CDS PputW619_0948 NC_010501.1 1043271 1044527 D PFAM: cell division protein FtsA; KEGG: pen:PSEEN4481 cell division protein FtsA; cell division protein FtsA 1043271..1044527 Pseudomonas putida W619 6109866 YP_001747823.1 CDS PputW619_0949 NC_010501.1 1044583 1045779 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1044583..1045779 Pseudomonas putida W619 6109867 YP_001747824.1 CDS lpxC NC_010501.1 1045892 1046803 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1045892..1046803 Pseudomonas putida W619 6109868 YP_001747825.1 CDS PputW619_0951 NC_010501.1 1046879 1047334 R KEGG: pen:PSEEN4478 hypothetical protein; hypothetical protein complement(1046879..1047334) Pseudomonas putida W619 6109869 YP_001747826.1 CDS secA NC_010501.1 1047646 1050381 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1047646..1050381 Pseudomonas putida W619 6109870 YP_001747827.1 CDS argJ NC_010501.1 1050571 1051788 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1050571..1051788 Pseudomonas putida W619 6109871 YP_001747828.1 CDS PputW619_0954 NC_010501.1 1051908 1052540 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN4475 glutathione S-transferase; glutathione S-transferase domain-containing protein 1051908..1052540 Pseudomonas putida W619 6109872 YP_001747829.1 CDS PputW619_0955 NC_010501.1 1052537 1053481 D TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pen:PSEEN4474 hydrolase MutT/NUDIX family/thiamine monophosphate synthase; hypothetical protein 1052537..1053481 Pseudomonas putida W619 6109873 YP_001747830.1 CDS PputW619_0956 NC_010501.1 1053521 1054087 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pen:PSEEN4473 Cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP--cobalamin adenosyltransferase complement(1053521..1054087) Pseudomonas putida W619 6109874 YP_001747831.1 CDS PputW619_0957 NC_010501.1 1054089 1056119 R KEGG: pen:PSEEN4472 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(1054089..1056119) Pseudomonas putida W619 6109875 YP_001747832.1 CDS PputW619_0958 NC_010501.1 1056157 1057074 R catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase complement(1056157..1057074) Pseudomonas putida W619 6109876 YP_001747833.1 CDS PputW619_0959 NC_010501.1 1057177 1057662 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1057177..1057662 Pseudomonas putida W619 6109877 YP_001747834.1 CDS PputW619_0960 NC_010501.1 1057777 1058619 D PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN4468 ion small-conductance mechanosensitive channel; mechanosensitive ion channel MscS 1057777..1058619 Pseudomonas putida W619 6109878 YP_001747835.1 CDS PputW619_0961 NC_010501.1 1058841 1060085 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4467 multidrug efflux MFS transporter; major facilitator transporter 1058841..1060085 Pseudomonas putida W619 6109879 YP_001747836.1 CDS PputW619_0962 NC_010501.1 1060103 1061650 R TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4466 muropeptide permease AmpG; AmpG-like permease complement(1060103..1061650) Pseudomonas putida W619 6109880 YP_001747837.1 CDS PputW619_0963 NC_010501.1 1061694 1062047 R PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN4465 methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(1061694..1062047) Pseudomonas putida W619 6109881 YP_001747838.1 CDS PputW619_0964 NC_010501.1 1062200 1063210 D KEGG: pen:PSEEN4464 hypothetical protein; hypothetical protein 1062200..1063210 Pseudomonas putida W619 6109882 YP_001747839.1 CDS PputW619_0965 NC_010501.1 1063352 1064083 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN4463 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1063352..1064083 Pseudomonas putida W619 6109883 YP_001747840.1 CDS fxsA NC_010501.1 1064150 1064611 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 1064150..1064611 Pseudomonas putida W619 6109884 YP_001747841.1 CDS groES NC_010501.1 1064852 1065145 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1064852..1065145 Pseudomonas putida W619 6109885 YP_001747842.1 CDS groEL NC_010501.1 1065194 1066834 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1065194..1066834 Pseudomonas putida W619 6109886 YP_001747843.1 CDS PputW619_0969 NC_010501.1 1067002 1067685 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4458 response regulator ColR; two component transcriptional regulator 1067002..1067685 Pseudomonas putida W619 6109887 YP_001747844.1 CDS PputW619_0970 NC_010501.1 1067675 1068985 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4457 sensor histidine kinase ColS; integral membrane sensor signal transduction histidine kinase 1067675..1068985 Pseudomonas putida W619 6109888 YP_001747845.1 CDS PputW619_0971 NC_010501.1 1069093 1069773 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4456 hypothetical protein; type 11 methyltransferase 1069093..1069773 Pseudomonas putida W619 6109889 YP_001747846.1 CDS PputW619_0972 NC_010501.1 1069780 1070478 D PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN4455 lipopolysaccharide kinase InaA; lipopolysaccharide kinase 1069780..1070478 Pseudomonas putida W619 6109890 YP_001747847.1 CDS PputW619_0973 NC_010501.1 1070478 1070705 D KEGG: pen:PSEEN4454 hypothetical protein; hypothetical protein 1070478..1070705 Pseudomonas putida W619 6109891 YP_001747848.1 CDS PputW619_0974 NC_010501.1 1070768 1073812 R MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein complement(1070768..1073812) Pseudomonas putida W619 6109892 YP_001747849.1 CDS PputW619_0975 NC_010501.1 1073826 1074974 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1110 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit complement(1073826..1074974) Pseudomonas putida W619 6109893 YP_001747850.1 CDS PputW619_0976 NC_010501.1 1075118 1076215 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1115 hypothetical protein; hypothetical protein complement(1075118..1076215) Pseudomonas putida W619 6109894 YP_001747851.1 CDS PputW619_0977 NC_010501.1 1076218 1077282 R KEGG: pen:PSEEN1116 lipoprotein; lipoprotein complement(1076218..1077282) Pseudomonas putida W619 6109895 YP_001747852.1 CDS PputW619_0978 NC_010501.1 1077300 1078727 R PFAM: protein of unknown function DUF1111; KEGG: pen:PSEEN1117 hypothetical protein; hypothetical protein complement(1077300..1078727) Pseudomonas putida W619 6109896 YP_001747853.1 CDS PputW619_0979 NC_010501.1 1078986 1080323 R KEGG: pen:PSEEN1119 hypothetical protein; hypothetical protein complement(1078986..1080323) Pseudomonas putida W619 6109897 YP_001747854.1 CDS PputW619_0980 NC_010501.1 1080471 1082522 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN1120 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domain); diguanylate cyclase/phosphodiesterase complement(1080471..1082522) Pseudomonas putida W619 6109898 YP_001747855.1 CDS PputW619_0981 NC_010501.1 1082795 1083391 R PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1121 superoxide dismutase; superoxide dismutase complement(1082795..1083391) Pseudomonas putida W619 6109899 YP_001747856.1 CDS PputW619_0982 NC_010501.1 1083610 1084209 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN1123 transporter, LysE family; lysine exporter protein LysE/YggA complement(1083610..1084209) Pseudomonas putida W619 6109900 YP_001747857.1 CDS PputW619_0983 NC_010501.1 1084300 1085190 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1084300..1085190 Pseudomonas putida W619 6109901 YP_001747858.1 CDS PputW619_0984 NC_010501.1 1085237 1086232 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pen:PSEEN1125 nucleoside-diphosphate-sugar epimerases; NAD-dependent epimerase/dehydratase 1085237..1086232 Pseudomonas putida W619 6109902 YP_001747859.1 CDS PputW619_0985 NC_010501.1 1086320 1087147 D KEGG: pen:PSEEN1126 hypothetical protein; hypothetical protein 1086320..1087147 Pseudomonas putida W619 6109903 YP_001747860.1 CDS PputW619_0986 NC_010501.1 1087280 1088329 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1127 xenobiotic reductase B; NADH:flavin oxidoreductase complement(1087280..1088329) Pseudomonas putida W619 6109904 YP_001747861.1 CDS PputW619_0987 NC_010501.1 1088348 1088650 R PFAM: regulatory protein ArsR; KEGG: pen:PSEEN1128 transcriptional regulator (ArsR family); ArsR family transcriptional regulator complement(1088348..1088650) Pseudomonas putida W619 6109905 YP_001747862.1 CDS PputW619_0988 NC_010501.1 1088803 1089384 D PFAM: protein of unknown function DUF479; KEGG: pen:PSEEN1129 hypothetical protein; hypothetical protein 1088803..1089384 Pseudomonas putida W619 6109906 YP_001747863.1 CDS PputW619_0989 NC_010501.1 1089406 1090194 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN1136 acyltransferase; phospholipid/glycerol acyltransferase complement(1089406..1090194) Pseudomonas putida W619 6109907 YP_001747864.1 CDS PputW619_0990 NC_010501.1 1090194 1090949 R KEGG: pen:PSEEN1137 hypothetical protein; hypothetical protein complement(1090194..1090949) Pseudomonas putida W619 6109908 YP_001747865.1 CDS PputW619_0991 NC_010501.1 1091099 1091986 D KEGG: pen:PSEEN1138 hypothetical protein; hypothetical protein 1091099..1091986 Pseudomonas putida W619 6109909 YP_001747866.1 CDS PputW619_0992 NC_010501.1 1092051 1093133 D PFAM: beta-lactamase; KEGG: pen:PSEEN1139 beta-lactamase; beta-lactamase 1092051..1093133 Pseudomonas putida W619 6109910 YP_001747867.1 CDS PputW619_0993 NC_010501.1 1093130 1093426 D KEGG: pen:PSEEN1140 hypothetical protein; hypothetical protein 1093130..1093426 Pseudomonas putida W619 6109911 YP_001747868.1 CDS PputW619_0994 NC_010501.1 1093471 1094052 D PFAM: YceI family protein; KEGG: pen:PSEEN1141 hypothetical protein; hypothetical protein 1093471..1094052 Pseudomonas putida W619 6109912 YP_001747869.1 CDS PputW619_0995 NC_010501.1 1094054 1095211 D KEGG: pen:PSEEN1142 phospholipase; phospholipase 1094054..1095211 Pseudomonas putida W619 6109913 YP_001747870.1 CDS PputW619_0996 NC_010501.1 1095264 1095842 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN1143 protease C56; PfpI family intracellular peptidase 1095264..1095842 Pseudomonas putida W619 6109914 YP_001747871.1 CDS PputW619_0997 NC_010501.1 1095885 1096283 R KEGG: pmy:Pmen_3272 protein of unknown function DUF1486; hypothetical protein complement(1095885..1096283) Pseudomonas putida W619 6109915 YP_001747872.1 CDS PputW619_0998 NC_010501.1 1096399 1096989 D KEGG: pen:PSEEN1144 hypothetical protein; hypothetical protein 1096399..1096989 Pseudomonas putida W619 6109916 YP_001747873.1 CDS PputW619_0999 NC_010501.1 1096986 1097858 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_3270 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1096986..1097858 Pseudomonas putida W619 6109917 YP_001747874.1 CDS PputW619_1000 NC_010501.1 1097888 1099411 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: pen:PSEEN1145 fumarate hydratase, class I; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha complement(1097888..1099411) Pseudomonas putida W619 6109918 YP_001747875.1 CDS PputW619_1001 NC_010501.1 1099655 1100581 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN1146 ferredoxin reductase; hypothetical protein 1099655..1100581 Pseudomonas putida W619 6109919 YP_001747876.1 CDS PputW619_1002 NC_010501.1 1100636 1102090 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1100636..1102090) Pseudomonas putida W619 6109920 YP_001747877.1 CDS PputW619_1003 NC_010501.1 1102262 1102648 D KEGG: pen:PSEEN1148 hypothetical protein; hypothetical protein 1102262..1102648 Pseudomonas putida W619 6109921 YP_001747878.1 CDS PputW619_1004 NC_010501.1 1102772 1103131 D PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN1149 hypothetical protein; type IV pilus assembly PilZ 1102772..1103131 Pseudomonas putida W619 6109922 YP_001747879.1 CDS sbcB NC_010501.1 1103178 1104614 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1103178..1104614 Pseudomonas putida W619 6109923 YP_001747880.1 CDS PputW619_1006 NC_010501.1 1104695 1105072 R KEGG: pen:PSEEN1151 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit complement(1104695..1105072) Pseudomonas putida W619 6109924 YP_001747881.1 CDS purU NC_010501.1 1105368 1106219 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1105368..1106219 Pseudomonas putida W619 6109925 YP_001747882.1 CDS PputW619_1008 NC_010501.1 1106408 1107400 R PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4434 hypothetical protein; hypothetical protein complement(1106408..1107400) Pseudomonas putida W619 6109926 YP_001747883.1 CDS PputW619_1009 NC_010501.1 1107397 1108161 R KEGG: pau:PA14_56040 putative deacetylase; putative deacetylase complement(1107397..1108161) Pseudomonas putida W619 6109927 YP_001747884.1 CDS PputW619_1010 NC_010501.1 1108154 1109266 R PFAM: glycosyl transferase group 1; KEGG: pfo:Pfl_4432 glycosyl transferase, group 1; glycosyl transferase group 1 protein complement(1108154..1109266) Pseudomonas putida W619 6109928 YP_001747885.1 CDS PputW619_1011 NC_010501.1 1109454 1111328 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1154 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(1109454..1111328) Pseudomonas putida W619 6109929 YP_001747886.1 CDS PputW619_1012 NC_010501.1 1111494 1112969 D PFAM: protein of unknown function DUF853 NPT hydrolase putative; SMART: AAA ATPase; KEGG: pen:PSEEN1155 hypothetical protein; hypothetical protein 1111494..1112969 Pseudomonas putida W619 6109930 YP_001747887.1 CDS PputW619_1013 NC_010501.1 1113074 1114546 R PFAM: phosphate transporter; KEGG: pen:PSEEN1157 low-affinity inorganic phosphate transporter; phosphate transporter complement(1113074..1114546) Pseudomonas putida W619 6109931 YP_001747888.1 CDS PputW619_1014 NC_010501.1 1114864 1115064 R KEGG: pen:PSEEN1158 hypothetical protein; hypothetical protein complement(1114864..1115064) Pseudomonas putida W619 6109932 YP_001747889.1 CDS PputW619_1015 NC_010501.1 1115532 1116407 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pen:PSEEN1160 regulatory protein for pca operon (activator); IclR family transcriptional regulator 1115532..1116407 Pseudomonas putida W619 6109933 YP_001747890.1 CDS PputW619_1016 NC_010501.1 1116733 1118076 D TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1162 4-hydroxybenzoate transporter (MFS superfamily); benzoate transport 1116733..1118076 Pseudomonas putida W619 6109934 YP_001747891.1 CDS PputW619_1017 NC_010501.1 1118300 1119502 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 1118300..1119502 Pseudomonas putida W619 6109935 YP_001747892.1 CDS PputW619_1018 NC_010501.1 1119691 1120980 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1166 dicarboxylic acid transport protein; alpha-ketoglutarate permease (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 1119691..1120980 Pseudomonas putida W619 6109936 YP_001747893.1 CDS PputW619_1019 NC_010501.1 1120990 1122342 D Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 1120990..1122342 Pseudomonas putida W619 6109937 YP_001747894.1 CDS PputW619_1020 NC_010501.1 1122354 1123145 D TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase 1122354..1123145 Pseudomonas putida W619 6109938 YP_001747895.1 CDS PputW619_1021 NC_010501.1 1123156 1123554 D KEGG: pen:PSEEN1169 gamma-carboxymuconolactone decarboxylase (CMD); TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 1123156..1123554 Pseudomonas putida W619 6109939 YP_001747896.1 CDS PputW619_1022 NC_010501.1 1123679 1124191 R PFAM: protein of unknown function DUF962; KEGG: pen:PSEEN4366 hypothetical protein; hypothetical protein complement(1123679..1124191) Pseudomonas putida W619 6109940 YP_001747897.1 CDS PputW619_1023 NC_010501.1 1124347 1125600 R PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family; outer membrane porin complement(1124347..1125600) Pseudomonas putida W619 6109941 YP_001747898.1 CDS PputW619_1024 NC_010501.1 1125858 1127312 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4362 multidrug/solvent efflux outer membrane protein TtgC, RND family; RND efflux system outer membrane lipoprotein complement(1125858..1127312) Pseudomonas putida W619 6109942 YP_001747899.1 CDS PputW619_1025 NC_010501.1 1127309 1130461 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4361 multidrug/solvent RND transporter TtgB; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(1127309..1130461) Pseudomonas putida W619 6109943 YP_001747900.1 CDS PputW619_1026 NC_010501.1 1130465 1131619 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4360 multidrug/solvent efflux RND membrane fusion protein; RND family efflux transporter MFP subunit complement(1130465..1131619) Pseudomonas putida W619 6109944 YP_001747901.1 CDS PputW619_1027 NC_010501.1 1131875 1132507 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: pen:PSEEN4359 transcriptional regulator TtgR for multidrug efflux pump (TetR/AcrR family); TetR family transcriptional regulator 1131875..1132507 Pseudomonas putida W619 6109945 YP_001747902.1 CDS PputW619_1028 NC_010501.1 1132579 1134030 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4357 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter complement(1132579..1134030) Pseudomonas putida W619 6109946 YP_001747903.1 CDS PputW619_1029 NC_010501.1 1134410 1135279 D KEGG: pen:PSEEN4356 carboxyphosphonoenolpyruvate phosphonomutase; carboxyphosphonoenolpyruvate phosphonomutase 1134410..1135279 Pseudomonas putida W619 6109947 YP_001747904.1 CDS PputW619_1030 NC_010501.1 1135300 1135473 R KEGG: pen:PSEEN4355 hypothetical protein; hypothetical protein complement(1135300..1135473) Pseudomonas putida W619 6109948 YP_001747905.1 CDS PputW619_1031 NC_010501.1 1135567 1136475 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4354 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1135567..1136475) Pseudomonas putida W619 6109949 YP_001747906.1 CDS PputW619_1032 NC_010501.1 1136580 1137455 D PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4353 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 1136580..1137455 Pseudomonas putida W619 6109950 YP_001747907.1 CDS PputW619_1033 NC_010501.1 1137483 1138097 D PFAM: NAD-dependent epimerase/dehydratase; TrkA-N domain protein; NmrA family protein; KEGG: pen:PSEEN4352 hypothetical protein; NmrA family protein 1137483..1138097 Pseudomonas putida W619 6109951 YP_001747908.1 CDS PputW619_1034 NC_010501.1 1138091 1138969 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4351 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1138091..1138969) Pseudomonas putida W619 6109952 YP_001747909.1 CDS PputW619_1035 NC_010501.1 1139083 1140720 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pen:PSEEN4350 acetolactate synthase, large subunit; hypothetical protein 1139083..1140720 Pseudomonas putida W619 6109953 YP_001747910.1 CDS PputW619_1036 NC_010501.1 1140733 1141653 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pen:PSEEN4349 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1140733..1141653) Pseudomonas putida W619 6109954 YP_001747911.1 CDS PputW619_1037 NC_010501.1 1141856 1142149 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pen:PSEEN4348 hypothetical protein; antibiotic biosynthesis monooxygenase 1141856..1142149 Pseudomonas putida W619 6109955 YP_001747912.1 CDS PputW619_1038 NC_010501.1 1142206 1142439 D KEGG: pen:PSEEN4347 hypothetical protein; hypothetical protein 1142206..1142439 Pseudomonas putida W619 6109956 YP_001747913.1 CDS PputW619_1039 NC_010501.1 1142440 1143045 R KEGG: pen:PSEEN4346 hypothetical protein; hypothetical protein complement(1142440..1143045) Pseudomonas putida W619 6109957 YP_001747914.1 CDS PputW619_1040 NC_010501.1 1143162 1143488 R KEGG: pen:PSEEN4345 hypothetical protein; hypothetical protein complement(1143162..1143488) Pseudomonas putida W619 6109958 YP_001747915.1 CDS PputW619_1041 NC_010501.1 1143878 1145293 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4342 dicarboxylate transport protein (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter complement(1143878..1145293) Pseudomonas putida W619 6109959 YP_001747916.1 CDS PputW619_1042 NC_010501.1 1145474 1146808 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN4341 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator complement(1145474..1146808) Pseudomonas putida W619 6109960 YP_001747917.1 CDS PputW619_1043 NC_010501.1 1146802 1148559 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4340 sensor histidine kinase; histidine kinase complement(1146802..1148559) Pseudomonas putida W619 6109961 YP_001747918.1 CDS PputW619_1044 NC_010501.1 1148642 1150933 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: pen:PSEEN4339 beta-D-glucoside glucohydrolase, periplasmic; glycoside hydrolase family 3 complement(1148642..1150933) Pseudomonas putida W619 6109962 YP_001747919.1 CDS PputW619_1045 NC_010501.1 1151120 1151737 D PFAM: protein of unknown function DUF477; KEGG: pen:PSEEN4338 hypothetical protein; hypothetical protein 1151120..1151737 Pseudomonas putida W619 6109963 YP_001747920.1 CDS PputW619_1046 NC_010501.1 1151837 1153066 D KEGG: pen:PSEEN4336 hypothetical protein; hypothetical protein 1151837..1153066 Pseudomonas putida W619 6109964 YP_001747921.1 CDS PputW619_1047 NC_010501.1 1153098 1154111 R KEGG: pen:PSEEN4330 hypothetical protein; hypothetical protein complement(1153098..1154111) Pseudomonas putida W619 6109965 YP_001747922.1 CDS PputW619_1048 NC_010501.1 1154225 1155292 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN4329 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase 1154225..1155292 Pseudomonas putida W619 6109966 YP_001747923.1 CDS PputW619_1049 NC_010501.1 1155577 1156467 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4319 (R)-3-hydroxydecanoyl-ACP:CoA transacylase (3-hydroxyacyl-CoA-acyl carrier protein transferase); alpha/beta hydrolase fold family protein complement(1155577..1156467) Pseudomonas putida W619 6109968 YP_001747924.1 CDS PputW619_1050 NC_010501.1 1156803 1157504 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN4317 16S rRNA pseudouridylate 516 synthase; pseudouridine synthase complement(1156803..1157504) Pseudomonas putida W619 6109969 YP_001747925.1 CDS PputW619_1051 NC_010501.1 1157539 1157769 R KEGG: pen:PSEEN4316 hypothetical protein; hypothetical protein complement(1157539..1157769) Pseudomonas putida W619 6109970 YP_001747926.1 CDS PputW619_1052 NC_010501.1 1158016 1158456 D KEGG: pen:PSEEN4314 lipoprotein; lipoprotein 1158016..1158456 Pseudomonas putida W619 6109971 YP_001747927.1 CDS PputW619_1053 NC_010501.1 1158486 1159592 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN4313 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1158486..1159592) Pseudomonas putida W619 6109972 YP_001747928.1 CDS PputW619_1054 NC_010501.1 1159719 1160411 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1159719..1160411 Pseudomonas putida W619 6109973 YP_001747929.1 CDS PputW619_1055 NC_010501.1 1160464 1161495 R TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: pen:PSEEN4308 ammonia monooxygenase; membrane protein AbrB complement(1160464..1161495) Pseudomonas putida W619 6109974 YP_001747930.1 CDS PputW619_1056 NC_010501.1 1161488 1163002 R PFAM: protein of unknown function DUF112 transmembrane; KEGG: pen:PSEEN4307 tricarboxylate transport protein TctA; hypothetical protein complement(1161488..1163002) Pseudomonas putida W619 6109975 YP_001747931.1 CDS PputW619_1057 NC_010501.1 1163006 1163464 R KEGG: pen:PSEEN4306 tricarboxylate transport protein TctB; tricarboxylate transport protein TctB complement(1163006..1163464) Pseudomonas putida W619 6109976 YP_001747932.1 CDS PputW619_1058 NC_010501.1 1163595 1164575 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4305 tricarboxylate transport protein TctC; hypothetical protein complement(1163595..1164575) Pseudomonas putida W619 6109977 YP_001747933.1 CDS PputW619_1059 NC_010501.1 1164607 1165896 R PFAM: outer membrane porin; KEGG: pen:PSEEN4304 porin, OprD family; outer membrane porin complement(1164607..1165896) Pseudomonas putida W619 6109978 YP_001747934.1 CDS PputW619_1060 NC_010501.1 1166097 1166768 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4303 DNA-binding response regulator TctD; two component transcriptional regulator 1166097..1166768 Pseudomonas putida W619 6109979 YP_001747935.1 CDS PputW619_1061 NC_010501.1 1166761 1168140 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: pen:PSEEN4302 sensor histidine kinase TctE; integral membrane sensor signal transduction histidine kinase 1166761..1168140 Pseudomonas putida W619 6109980 YP_001747936.1 CDS PputW619_1062 NC_010501.1 1168181 1168987 R PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4301 hypothetical protein; putative signal transduction protein complement(1168181..1168987) Pseudomonas putida W619 6109981 YP_001747937.1 CDS PputW619_1063 NC_010501.1 1169019 1169960 R KEGG: pen:PSEEN4300 hypothetical protein; hypothetical protein complement(1169019..1169960) Pseudomonas putida W619 6109982 YP_001747938.1 CDS PputW619_1064 NC_010501.1 1170094 1170348 D PFAM: protein of unknown function DUF339; KEGG: pen:PSEEN4299 hypothetical protein; hypothetical protein 1170094..1170348 Pseudomonas putida W619 6109983 YP_001747939.1 CDS PputW619_1065 NC_010501.1 1170332 1170790 D KEGG: pen:PSEEN4298 hypothetical protein; hypothetical protein 1170332..1170790 Pseudomonas putida W619 6109984 YP_001747940.1 CDS PputW619_1066 NC_010501.1 1170843 1172447 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1170843..1172447) Pseudomonas putida W619 6109985 YP_001747941.1 CDS algU NC_010501.1 1172883 1173464 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 1172883..1173464 Pseudomonas putida W619 6109986 YP_001747942.1 CDS PputW619_1068 NC_010501.1 1173496 1174086 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: pen:PSEEN4295 sigma factor AlgU negative regulatory protein MucA; anti sigma-E protein RseA 1173496..1174086 Pseudomonas putida W619 6109987 YP_001747943.1 CDS PputW619_1069 NC_010501.1 1174099 1175064 D PFAM: MucB/RseB family protein; KEGG: pen:PSEEN4294 sigma factor AlgU regulatory protein MucB; sigma E regulatory protein MucB/RseB 1174099..1175064 Pseudomonas putida W619 6109988 YP_001747944.1 CDS PputW619_1070 NC_010501.1 1175241 1176680 D KEGG: pen:PSEEN4293 serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1175241..1176680 Pseudomonas putida W619 6109989 YP_001747945.1 CDS PputW619_1071 NC_010501.1 1176863 1178662 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1176863..1178662 Pseudomonas putida W619 6109990 YP_001747946.1 CDS PputW619_1072 NC_010501.1 1178668 1179522 D KEGG: pen:PSEEN4291 leader peptidase (signal peptidase I) , serine protease; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1178668..1179522 Pseudomonas putida W619 6109991 YP_001747947.1 CDS rnc NC_010501.1 1179684 1180373 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1179684..1180373 Pseudomonas putida W619 6109992 YP_001747948.1 CDS era NC_010501.1 1180366 1181268 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1180366..1181268 Pseudomonas putida W619 6109993 YP_001747949.1 CDS recO NC_010501.1 1181322 1182005 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1181322..1182005 Pseudomonas putida W619 6109994 YP_001747950.1 CDS PputW619_1076 NC_010501.1 1182049 1182789 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1182049..1182789 Pseudomonas putida W619 6109995 YP_001747951.1 CDS PputW619_1077 NC_010501.1 1182937 1183893 R TIGRFAM: methyltransferase; PFAM: methyltransferase putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4373 methyltransferase; methyltransferase complement(1182937..1183893) Pseudomonas putida W619 6109996 YP_001747952.1 CDS PputW619_1078 NC_010501.1 1183890 1184633 R TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4372 methyltransferase; methyltransferase complement(1183890..1184633) Pseudomonas putida W619 6109997 YP_001747953.1 CDS PputW619_1079 NC_010501.1 1184723 1185115 R KEGG: psp:PSPPH_3942 lipoprotein, putative; putative lipoprotein complement(1184723..1185115) Pseudomonas putida W619 6109998 YP_001747954.1 CDS PputW619_1080 NC_010501.1 1185224 1187650 R KEGG: pen:PSEEN4367 DNA-binding ATP-dependent protease La-2; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(1185224..1187650) Pseudomonas putida W619 6109999 YP_001747955.1 CDS PputW619_1081 NC_010501.1 1187813 1190224 R TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1170 glucose dehydrogenase Gcd; PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein complement(1187813..1190224) Pseudomonas putida W619 6110000 YP_001747956.1 CDS PputW619_1082 NC_010501.1 1190253 1191599 R PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN1171 porin B precursor (outer membrane protein D1) (glucose porin); carbohydrate-selective porin OprB complement(1190253..1191599) Pseudomonas putida W619 6110001 YP_001747957.1 CDS PputW619_1083 NC_010501.1 1191917 1193962 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1173 TonB-dependent receptor; TonB-dependent receptor complement(1191917..1193962) Pseudomonas putida W619 6110002 YP_001747958.1 CDS PputW619_1084 NC_010501.1 1194132 1194353 D KEGG: pen:PSEEN1174 hypothetical protein; hypothetical protein 1194132..1194353 Pseudomonas putida W619 6110003 YP_001747959.1 CDS PputW619_1085 NC_010501.1 1194355 1195035 D KEGG: pen:PSEEN1175 hypothetical protein; hypothetical protein 1194355..1195035 Pseudomonas putida W619 6110004 YP_001747960.1 CDS PputW619_1086 NC_010501.1 1195045 1195803 R PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN1176 iron-chelator utilization protein; FAD-binding 9 siderophore-interacting domain-containing protein complement(1195045..1195803) Pseudomonas putida W619 6110005 YP_001747961.1 CDS PputW619_1087 NC_010501.1 1195796 1196341 R PFAM: transcriptional regulator PadR family protein; KEGG: pen:PSEEN1177 transcriptional regulator, PadR family; PadR-like family transcriptional regulator complement(1195796..1196341) Pseudomonas putida W619 6110006 YP_001747962.1 CDS PputW619_1088 NC_010501.1 1196431 1199568 R KEGG: pen:PSEEN1178 membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase complement(1196431..1199568) Pseudomonas putida W619 6110007 YP_001747963.1 CDS PputW619_1089 NC_010501.1 1199962 1201380 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1179 amino acid permease; amino acid permease-associated protein 1199962..1201380 Pseudomonas putida W619 6110008 YP_001747964.1 CDS PputW619_1090 NC_010501.1 1201495 1203114 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN1180 ferredoxin-dependent glutamate synthase; glutamate synthase complement(1201495..1203114) Pseudomonas putida W619 6110009 YP_001747965.1 CDS PputW619_1091 NC_010501.1 1203216 1207571 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1182 ATP-dependent DNA helicase Lhr; DEAD/DEAH box helicase complement(1203216..1207571) Pseudomonas putida W619 6110010 YP_001747966.1 CDS PputW619_1092 NC_010501.1 1207607 1208020 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN1183 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 1207607..1208020 Pseudomonas putida W619 6110011 YP_001747967.1 CDS PputW619_1093 NC_010501.1 1208004 1208921 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1184 transcriptional regulator MetR; LysR family transcriptional regulator complement(1208004..1208921) Pseudomonas putida W619 6110012 YP_001747968.1 CDS PputW619_1094 NC_010501.1 1209118 1210113 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1185 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 1209118..1210113 Pseudomonas putida W619 6110013 YP_001747969.1 CDS PputW619_1095 NC_010501.1 1210143 1211471 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN1188 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator complement(1210143..1211471) Pseudomonas putida W619 6110014 YP_001747970.1 CDS PputW619_1096 NC_010501.1 1211468 1213372 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1189 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1211468..1213372) Pseudomonas putida W619 6110015 YP_001747971.1 CDS PputW619_1097 NC_010501.1 1213442 1214176 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1190 glutamate-aspartate ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1213442..1214176) Pseudomonas putida W619 6110016 YP_001747972.1 CDS PputW619_1098 NC_010501.1 1214173 1214844 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1191 glutamate-aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(1214173..1214844) Pseudomonas putida W619 6110017 YP_001747973.1 CDS PputW619_1099 NC_010501.1 1214845 1215591 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1192 glutamate/aspartate ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit complement(1214845..1215591) Pseudomonas putida W619 6110018 YP_001747974.1 CDS PputW619_1100 NC_010501.1 1215734 1216651 R PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1193 glutamate/aspartate ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(1215734..1216651) Pseudomonas putida W619 6110019 YP_001747975.1 CDS PputW619_1101 NC_010501.1 1216989 1221119 D SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 1216989..1221119 Pseudomonas putida W619 6110020 YP_001747976.1 CDS glpD NC_010501.1 1221155 1222684 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(1221155..1222684) Pseudomonas putida W619 6110021 YP_001747977.1 CDS PputW619_1103 NC_010501.1 1222858 1223613 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN1196 glycerol-3-phosphate regulon repressor; DeoR family transcriptional regulator complement(1222858..1223613) Pseudomonas putida W619 6110022 YP_001747978.1 CDS glpK NC_010501.1 1223727 1225232 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(1223727..1225232) Pseudomonas putida W619 6110023 YP_001747979.1 CDS PputW619_1105 NC_010501.1 1225268 1226119 R TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: pen:PSEEN1198 glycerol uptake facilitator protein; MIP family channel protein complement(1225268..1226119) Pseudomonas putida W619 6110024 YP_001747980.1 CDS PputW619_1106 NC_010501.1 1226420 1226890 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pen:PSEEN1199 hypothetical protein; ybaK/ebsC protein 1226420..1226890 Pseudomonas putida W619 6110025 YP_001747981.1 CDS PputW619_1107 NC_010501.1 1226928 1228037 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1200 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1226928..1228037) Pseudomonas putida W619 6110026 YP_001747982.1 CDS PputW619_1108 NC_010501.1 1228034 1228954 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1228034..1228954) Pseudomonas putida W619 6110027 YP_001747983.1 CDS PputW619_1109 NC_010501.1 1229318 1231426 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1202 oxidoreductase molybdopterin-binding; molydopterin dinucleotide-binding region 1229318..1231426 Pseudomonas putida W619 6110028 YP_001747984.1 CDS PputW619_1110 NC_010501.1 1231518 1231853 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: pen:PSEEN1203 hypothetical protein; glutaredoxin-like protein 1231518..1231853 Pseudomonas putida W619 6110029 YP_001747985.1 CDS PputW619_1111 NC_010501.1 1231910 1232383 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN1204 bacterioferritin; bacterioferritin complement(1231910..1232383) Pseudomonas putida W619 6110030 YP_001747986.1 CDS PputW619_1112 NC_010501.1 1232583 1232804 R PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1205 bacterioferritin-associated ferredoxin Bfd; BFD/(2Fe-2S)-binding domain-containing protein complement(1232583..1232804) Pseudomonas putida W619 6110031 YP_001747987.1 CDS PputW619_1113 NC_010501.1 1233018 1233620 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1206 peroxiredoxin (alkyl hydroperoxide reductase C); alkyl hydroperoxide reductase 1233018..1233620 Pseudomonas putida W619 6110032 YP_001747988.1 CDS PputW619_1114 NC_010501.1 1233692 1234366 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1233692..1234366) Pseudomonas putida W619 6110033 YP_001747989.1 CDS PputW619_1115 NC_010501.1 1234363 1235409 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1234363..1235409) Pseudomonas putida W619 6110034 YP_001747990.1 CDS PputW619_1116 NC_010501.1 1235540 1236514 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1209 outer membrane protein, OmpA/MotB family; OmpA/MotB domain-containing protein 1235540..1236514 Pseudomonas putida W619 6110035 YP_001747991.1 CDS PputW619_1117 NC_010501.1 1236642 1237859 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1236642..1237859 Pseudomonas putida W619 6110036 YP_001747992.1 CDS PputW619_1118 NC_010501.1 1237980 1238486 R KEGG: pen:PSEEN1211 hypothetical protein; hypothetical protein complement(1237980..1238486) Pseudomonas putida W619 6110037 YP_001747993.1 CDS PputW619_1119 NC_010501.1 1238852 1239478 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN1212 response regulator, LuxR family; two component LuxR family transcriptional regulator 1238852..1239478 Pseudomonas putida W619 6110038 YP_001747994.1 CDS PputW619_1120 NC_010501.1 1239523 1239699 R KEGG: pen:PSEEN1213 hypothetical protein; hypothetical protein complement(1239523..1239699) Pseudomonas putida W619 6110039 YP_001747995.1 CDS PputW619_1121 NC_010501.1 1239803 1240441 R KEGG: pen:PSEEN1214 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III complement(1239803..1240441) Pseudomonas putida W619 6110040 YP_001747996.1 CDS PputW619_1122 NC_010501.1 1240446 1240970 R KEGG: pen:PSEEN1215 hypothetical protein; hypothetical protein complement(1240446..1240970) Pseudomonas putida W619 6110041 YP_001747997.1 CDS PputW619_1123 NC_010501.1 1240963 1241565 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pen:PSEEN1216 electron transport complex protein RnfG; RnfABCDGE type electron transport complex subunit G complement(1240963..1241565) Pseudomonas putida W619 6110042 YP_001747998.1 CDS PputW619_1124 NC_010501.1 1241562 1242545 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pen:PSEEN1217 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D complement(1241562..1242545) Pseudomonas putida W619 6110043 YP_001747999.1 CDS PputW619_1125 NC_010501.1 1242542 1243090 R KEGG: pen:PSEEN1219 electron transport complex protein RnfA; electron transport complex protein RnfA complement(1242542..1243090) Pseudomonas putida W619 6110044 YP_001748000.1 CDS metG NC_010501.1 1243183 1245228 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1243183..1245228) Pseudomonas putida W619 6110045 YP_001748001.1 CDS PputW619_1127 NC_010501.1 1245385 1246479 D PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN1221 ATPase, Mrp family; hypothetical protein 1245385..1246479 Pseudomonas putida W619 6110046 YP_001748002.1 CDS PputW619_1128 NC_010501.1 1246673 1246882 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1222 cold shock protein CapB; cold-shock DNA-binding domain-containing protein complement(1246673..1246882) Pseudomonas putida W619 6110047 YP_001748003.1 CDS dcd NC_010501.1 1247213 1247779 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1247213..1247779 Pseudomonas putida W619 6110048 YP_001748004.1 CDS PputW619_1130 NC_010501.1 1247878 1248105 D KEGG: pen:PSEEN1224 hypothetical protein; hypothetical protein 1247878..1248105 Pseudomonas putida W619 6110049 YP_001748005.1 CDS PputW619_1131 NC_010501.1 1248119 1248778 R PFAM: metallophosphoesterase; KEGG: psb:Psyr_3881 hypothetical protein; metallophosphoesterase complement(1248119..1248778) Pseudomonas putida W619 6110050 YP_001748006.1 CDS PputW619_1132 NC_010501.1 1248775 1251228 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: psa:PST_2663 ATP-dependent helicase, DEAD box family; DEAD/DEAH box helicase complement(1248775..1251228) Pseudomonas putida W619 6110051 YP_001748007.1 CDS PputW619_1133 NC_010501.1 1251297 1252412 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pen:PSEEN1225 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(1251297..1252412) Pseudomonas putida W619 6110052 YP_001748008.1 CDS PputW619_1134 NC_010501.1 1252510 1254171 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1252510..1254171) Pseudomonas putida W619 6110053 YP_001748009.1 CDS PputW619_1135 NC_010501.1 1254168 1255184 R KEGG: pmy:Pmen_2196 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; RNA procession exonuclease-like protein complement(1254168..1255184) Pseudomonas putida W619 6110054 YP_001748010.1 CDS PputW619_1136 NC_010501.1 1255291 1255629 R hypothetical protein complement(1255291..1255629) Pseudomonas putida W619 6110055 YP_001748011.1 CDS PputW619_1137 NC_010501.1 1255738 1258179 R PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN1226 penicillin amidase; penicillin amidase complement(1255738..1258179) Pseudomonas putida W619 6110056 YP_001748012.1 CDS PputW619_1138 NC_010501.1 1258352 1258555 R PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1227 hypothetical protein; SecC motif-containing protein complement(1258352..1258555) Pseudomonas putida W619 6110057 YP_001748013.1 CDS PputW619_1139 NC_010501.1 1258563 1259039 R SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN1228 hypothetical protein; water stress/hypersensitive response domain-containing protein complement(1258563..1259039) Pseudomonas putida W619 6110058 YP_001748014.1 CDS PputW619_1140 NC_010501.1 1259036 1259518 R PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1229 hypothetical protein; hypothetical protein complement(1259036..1259518) Pseudomonas putida W619 6110059 YP_001748015.1 CDS PputW619_1141 NC_010501.1 1259522 1260016 R KEGG: pen:PSEEN1230 hypothetical protein; hypothetical protein complement(1259522..1260016) Pseudomonas putida W619 6110060 YP_001748016.1 CDS PputW619_1142 NC_010501.1 1260176 1260868 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1231 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 1260176..1260868 Pseudomonas putida W619 6110061 YP_001748017.1 CDS PputW619_1143 NC_010501.1 1260956 1261669 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1232 outer memebrane protein, OmpA family; OmpA/MotB domain-containing protein 1260956..1261669 Pseudomonas putida W619 6110062 YP_001748018.1 CDS PputW619_1144 NC_010501.1 1261689 1261964 D PFAM: protein of unknown function DUF1145; KEGG: pen:PSEEN1233 hypothetical protein; hypothetical protein 1261689..1261964 Pseudomonas putida W619 6110063 YP_001748019.1 CDS PputW619_1145 NC_010501.1 1261981 1262445 R KEGG: pen:PSEEN1272 hypothetical protein; hypothetical protein complement(1261981..1262445) Pseudomonas putida W619 6110064 YP_001748020.1 CDS dinG NC_010501.1 1262544 1264688 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1262544..1264688 Pseudomonas putida W619 6110065 YP_001748021.1 CDS PputW619_1147 NC_010501.1 1264770 1267037 D KEGG: pen:PSEEN1274 hydrolase; beta-agarase 1264770..1267037 Pseudomonas putida W619 6110066 YP_001748022.1 CDS PputW619_1148 NC_010501.1 1267145 1268290 D PFAM: beta-lactamase; KEGG: pen:PSEEN1275 beta-lactamase; beta-lactamase 1267145..1268290 Pseudomonas putida W619 6110067 YP_001748023.1 CDS PputW619_1149 NC_010501.1 1268390 1269373 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1276 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein 1268390..1269373 Pseudomonas putida W619 6110068 YP_001748024.1 CDS PputW619_1150 NC_010501.1 1269393 1270040 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1269393..1270040 Pseudomonas putida W619 6110069 YP_001748025.1 CDS PputW619_1151 NC_010501.1 1270241 1270705 D PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1279 lipoprotein; 17 kDa surface antigen 1270241..1270705 Pseudomonas putida W619 6110070 YP_001748026.1 CDS PputW619_1152 NC_010501.1 1270843 1272450 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1280 FAD-dependent dehydrogenases; FAD dependent oxidoreductase complement(1270843..1272450) Pseudomonas putida W619 6110071 YP_001748027.1 CDS PputW619_1153 NC_010501.1 1272554 1273228 R KEGG: pen:PSEEN1281 lipoprotein; lipoprotein complement(1272554..1273228) Pseudomonas putida W619 6110072 YP_001748028.1 CDS PputW619_1154 NC_010501.1 1273453 1274154 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1282 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1273453..1274154) Pseudomonas putida W619 6110073 YP_001748029.1 CDS livG NC_010501.1 1274155 1274922 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(1274155..1274922) Pseudomonas putida W619 6110074 YP_001748030.1 CDS livM NC_010501.1 1274919 1276175 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(1274919..1276175) Pseudomonas putida W619 6110075 YP_001748031.1 CDS PputW619_1157 NC_010501.1 1276172 1277095 R PFAM: inner-membrane translocator; KEGG: pen:PSEEN1285 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(1276172..1277095) Pseudomonas putida W619 6110076 YP_001748032.1 CDS PputW619_1158 NC_010501.1 1277282 1278397 R PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN1286 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor complement(1277282..1278397) Pseudomonas putida W619 6110077 YP_001748033.1 CDS PputW619_1159 NC_010501.1 1278757 1279071 D KEGG: pen:PSEEN1288 hypothetical protein; hypothetical protein 1278757..1279071 Pseudomonas putida W619 6110078 YP_001748034.1 CDS PputW619_1160 NC_010501.1 1279232 1280119 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pen:PSEEN1291 3-hydroxyisobutyrate dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 1279232..1280119 Pseudomonas putida W619 6110079 YP_001748035.1 CDS PputW619_1161 NC_010501.1 1280019 1282283 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN1292 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase complement(1280019..1282283) Pseudomonas putida W619 6110080 YP_001748036.1 CDS PputW619_1162 NC_010501.1 1282485 1285331 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(1282485..1285331) Pseudomonas putida W619 6110081 YP_001748037.1 CDS PputW619_1163 NC_010501.1 1285462 1286157 D KEGG: pen:PSEEN1294 hypothetical protein; hypothetical protein 1285462..1286157 Pseudomonas putida W619 6110082 YP_001748038.1 CDS PputW619_1164 NC_010501.1 1286266 1286595 D KEGG: pen:PSEEN1295 hypothetical protein; hypothetical protein 1286266..1286595 Pseudomonas putida W619 6110083 YP_001748039.1 CDS PputW619_1165 NC_010501.1 1286674 1286835 D KEGG: pen:PSEEN1296 hypothetical protein; hypothetical protein 1286674..1286835 Pseudomonas putida W619 6110084 YP_001748040.1 CDS PputW619_1166 NC_010501.1 1286971 1287087 D KEGG: pen:PSEEN1297 hypothetical protein; hypothetical protein 1286971..1287087 Pseudomonas putida W619 6110085 YP_001748041.1 CDS PputW619_1167 NC_010501.1 1287225 1289255 D PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN1298 hypothetical protein; fusaric acid resistance protein region 1287225..1289255 Pseudomonas putida W619 6110086 YP_001748042.1 CDS PputW619_1168 NC_010501.1 1289242 1289448 D PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN1299 hypothetical protein; hypothetical protein 1289242..1289448 Pseudomonas putida W619 6110087 YP_001748043.1 CDS PputW619_1169 NC_010501.1 1289460 1290326 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN1300 efflux transporter, membrane fusion protein; secretion protein HlyD family protein 1289460..1290326 Pseudomonas putida W619 6110088 YP_001748044.1 CDS PputW619_1170 NC_010501.1 1290341 1291558 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1305 sensor histidine kinase; GAF sensor signal transduction histidine kinase complement(1290341..1291558) Pseudomonas putida W619 6110089 YP_001748045.1 CDS PputW619_1171 NC_010501.1 1291744 1292067 D KEGG: pen:PSEEN1306 hypothetical protein; hypothetical protein 1291744..1292067 Pseudomonas putida W619 6110090 YP_001748046.1 CDS PputW619_1172 NC_010501.1 1292082 1293167 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: pen:PSEEN1308 hypothetical protein; diguanylate cyclase complement(1292082..1293167) Pseudomonas putida W619 6110091 YP_001748047.1 CDS PputW619_1173 NC_010501.1 1293391 1294287 R KEGG: pen:PSEEN1310 transporter, formate/nitrite family; formate/nitrate transporter complement(1293391..1294287) Pseudomonas putida W619 6110092 YP_001748048.1 CDS PputW619_1174 NC_010501.1 1300175 1301818 D catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 1300175..1301818 Pseudomonas putida W619 6110098 YP_001748049.1 CDS PputW619_1175 NC_010501.1 1302023 1303957 D PFAM: amine oxidase; KEGG: bvi:Bcep1808_4425 amine oxidase; amine oxidase 1302023..1303957 Pseudomonas putida W619 6110099 YP_001748050.1 CDS PputW619_1176 NC_010501.1 1304107 1305003 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_2988 carbon-nitrogen hydrolase family protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1304107..1305003 Pseudomonas putida W619 6110100 YP_001748051.1 CDS PputW619_1177 NC_010501.1 1305014 1306168 D KEGG: aau:AAur_3986 putative integral membrane protein; putative integral membrane protein 1305014..1306168 Pseudomonas putida W619 6110101 YP_001748052.1 CDS PputW619_1178 NC_010501.1 1306165 1307154 D PFAM: Asparaginase/glutaminase; KEGG: bov:BOV_1888 asparaginase family protein; asparaginase/glutaminase 1306165..1307154 Pseudomonas putida W619 6110102 YP_001748053.1 CDS PputW619_1179 NC_010501.1 1307246 1307800 D TIGRFAM: yecA family protein; KEGG: pen:PSEEN1320 hypothetical protein; yecA family protein 1307246..1307800 Pseudomonas putida W619 6110103 YP_001748054.1 CDS PputW619_1180 NC_010501.1 1307975 1308598 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase; glutathione S-transferase domain-containing protein 1307975..1308598 Pseudomonas putida W619 6110104 YP_001748055.1 CDS PputW619_1181 NC_010501.1 1308626 1310656 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pen:PSEEN1322 oxidoreductase, FAD-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1308626..1310656 Pseudomonas putida W619 6110105 YP_001748056.1 CDS PputW619_1182 NC_010501.1 1310709 1311605 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1324 transcriptional regulator, LysR family; LysR family transcriptional regulator 1310709..1311605 Pseudomonas putida W619 6110106 YP_001748057.1 CDS PputW619_1183 NC_010501.1 1311608 1312525 R PFAM: Aldose 1-epimerase; KEGG: pst:PSPTO_1047 hypothetical protein; aldose 1-epimerase complement(1311608..1312525) Pseudomonas putida W619 6110107 YP_001748058.1 CDS PputW619_1184 NC_010501.1 1312550 1313470 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: psp:PSPPH_0932 hypothetical protein; hypothetical protein complement(1312550..1313470) Pseudomonas putida W619 6110108 YP_001748059.1 CDS PputW619_1185 NC_010501.1 1313630 1314910 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: psp:PSPPH_0933 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1313630..1314910) Pseudomonas putida W619 6110109 YP_001748060.1 CDS PputW619_1186 NC_010501.1 1314911 1315438 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfo:Pfl_3455 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1314911..1315438) Pseudomonas putida W619 6110110 YP_001748061.1 CDS PputW619_1187 NC_010501.1 1315507 1316478 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfo:Pfl_3454 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(1315507..1316478) Pseudomonas putida W619 6110111 YP_001748062.1 CDS PputW619_1188 NC_010501.1 1316544 1317422 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pst:PSPTO_1052 senescence marker protein-30 family protein; SMP-30/gluconolaconase/LRE domain-containing protein complement(1316544..1317422) Pseudomonas putida W619 6110112 YP_001748063.1 CDS PputW619_1189 NC_010501.1 1317449 1318255 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: pmy:Pmen_3299 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1317449..1318255) Pseudomonas putida W619 6110113 YP_001748064.1 CDS PputW619_1190 NC_010501.1 1318539 1319777 R PFAM: outer membrane porin; KEGG: psb:Psyr_2127 outer membrane porin; outer membrane porin complement(1318539..1319777) Pseudomonas putida W619 6110114 YP_001748065.1 CDS PputW619_1191 NC_010501.1 1320534 1321784 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(1320534..1321784) Pseudomonas putida W619 6110115 YP_001748066.1 CDS PputW619_1192 NC_010501.1 1322362 1325241 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1322362..1325241) Pseudomonas putida W619 6110116 YP_001748067.1 CDS PputW619_1193 NC_010501.1 1325922 1326620 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1339 DNA-binding response regulator; two component transcriptional regulator 1325922..1326620 Pseudomonas putida W619 6110117 YP_001748068.1 CDS PputW619_1194 NC_010501.1 1326617 1328224 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1340 sensory histidine kinase; integral membrane sensor signal transduction histidine kinase 1326617..1328224 Pseudomonas putida W619 6110118 YP_001748069.1 CDS PputW619_1195 NC_010501.1 1328228 1328929 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: pen:PSEEN1341 phosphopantetheinyl transferase component of siderophore synthetase; 4'-phosphopantetheinyl transferase complement(1328228..1328929) Pseudomonas putida W619 6110119 YP_001748070.1 CDS PputW619_1196 NC_010501.1 1328994 1329785 R PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: pen:PSEEN1342 hydrolase; probable dienelactone hydrolase; dienelactone hydrolase complement(1328994..1329785) Pseudomonas putida W619 6110120 YP_001748071.1 CDS PputW619_1197 NC_010501.1 1329915 1330520 D KEGG: pen:PSEEN1343 outer membrane protein H1; outer membrane protein H1 1329915..1330520 Pseudomonas putida W619 6110121 YP_001748072.1 CDS PputW619_1198 NC_010501.1 1330670 1331347 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1345 transcriptional regulatory protein PhoP; two component transcriptional regulator 1330670..1331347 Pseudomonas putida W619 6110122 YP_001748073.1 CDS PputW619_1199 NC_010501.1 1331344 1332690 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1346 sensor protein PhoQ; integral membrane sensor signal transduction histidine kinase 1331344..1332690 Pseudomonas putida W619 6110123 YP_001748074.1 CDS PputW619_1200 NC_010501.1 1333013 1334335 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 1333013..1334335 Pseudomonas putida W619 6110124 YP_001748075.1 CDS PputW619_1201 NC_010501.1 1334408 1334902 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: pen:PSEEN1348 metallopeptidase, SprT family; hypothetical protein complement(1334408..1334902) Pseudomonas putida W619 6110125 YP_001748076.1 CDS PputW619_1202 NC_010501.1 1335043 1335642 R PFAM: protein of unknown function DUF1282; KEGG: pen:PSEEN1349 hypothetical protein; hypothetical protein complement(1335043..1335642) Pseudomonas putida W619 6110126 YP_001748077.1 CDS PputW619_1203 NC_010501.1 1335905 1336729 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1335905..1336729 Pseudomonas putida W619 6110127 YP_001748078.1 CDS PputW619_1204 NC_010501.1 1336733 1337404 D KEGG: pen:PSEEN1351 DNA-glycosylase; DNA-glycosylase 1336733..1337404 Pseudomonas putida W619 6110128 YP_001748079.1 CDS PputW619_1205 NC_010501.1 1337437 1337850 R KEGG: pen:PSEEN1352 hypothetical protein; hypothetical protein complement(1337437..1337850) Pseudomonas putida W619 6110129 YP_001748080.1 CDS PputW619_1206 NC_010501.1 1337843 1338448 R TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1353 tryptophan repressor binding protein WrbA; flavoprotein WrbA complement(1337843..1338448) Pseudomonas putida W619 6110130 YP_001748081.1 CDS PputW619_1207 NC_010501.1 1338445 1338798 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pen:PSEEN1354 arsenate reductase; arsenate reductase complement(1338445..1338798) Pseudomonas putida W619 6110131 YP_001748082.1 CDS PputW619_1208 NC_010501.1 1338884 1339348 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1355 thioredoxin; alkyl hydroperoxide reductase 1338884..1339348 Pseudomonas putida W619 6110132 YP_001748083.1 CDS PputW619_1209 NC_010501.1 1339432 1339836 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN1356 hypothetical protein; hypothetical protein complement(1339432..1339836) Pseudomonas putida W619 6110133 YP_001748084.1 CDS PputW619_1210 NC_010501.1 1339833 1340270 R KEGG: pen:PSEEN1357 hypothetical protein; hypothetical protein complement(1339833..1340270) Pseudomonas putida W619 6110134 YP_001748085.1 CDS PputW619_1211 NC_010501.1 1340302 1341291 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN1358 D-lactate dehydrogenase, NAD-dependent; D-isomer specific 2-hydroxyacid dehydrogenase complement(1340302..1341291) Pseudomonas putida W619 6110135 YP_001748086.1 CDS PputW619_1212 NC_010501.1 1341447 1344206 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pen:PSEEN1359 GacS sensor kinase protein; multi-sensor hybrid histidine kinase complement(1341447..1344206) Pseudomonas putida W619 6110136 YP_001748087.1 CDS PputW619_1213 NC_010501.1 1344359 1345117 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1360 DNA-binding response regulator; two component transcriptional regulator 1344359..1345117 Pseudomonas putida W619 6110137 YP_001748088.1 CDS PputW619_1214 NC_010501.1 1345121 1346512 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1361 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1345121..1346512 Pseudomonas putida W619 6110138 YP_001748089.1 CDS cysM NC_010501.1 1346584 1347522 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1346584..1347522 Pseudomonas putida W619 6110139 YP_001748090.1 CDS rumA NC_010501.1 1347523 1348881 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1347523..1348881 Pseudomonas putida W619 6110140 YP_001748091.1 CDS PputW619_1217 NC_010501.1 1348978 1351218 D KEGG: pen:PSEEN1364 GTP pyrophosphokinase RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1348978..1351218 Pseudomonas putida W619 6110141 YP_001748092.1 CDS mazG NC_010501.1 1351281 1352114 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1351281..1352114 Pseudomonas putida W619 6110142 YP_001748093.1 CDS PputW619_1219 NC_010501.1 1352141 1352680 D KEGG: pen:PSEEN1366 hypothetical protein; hypothetical protein 1352141..1352680 Pseudomonas putida W619 6110143 YP_001748094.1 CDS PputW619_1220 NC_010501.1 1352854 1353036 R KEGG: pen:PSEEN1367 hypothetical protein; hypothetical protein complement(1352854..1353036) Pseudomonas putida W619 6110144 YP_001748095.1 CDS PputW619_1221 NC_010501.1 1353202 1353912 R KEGG: pen:PSEEN1368 hypothetical protein; hypothetical protein complement(1353202..1353912) Pseudomonas putida W619 6110145 YP_001748096.1 CDS purN NC_010501.1 1353921 1354574 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1353921..1354574) Pseudomonas putida W619 6110146 YP_001748097.1 CDS PputW619_1223 NC_010501.1 1354574 1355632 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1354574..1355632) Pseudomonas putida W619 6110147 YP_001748098.1 CDS PputW619_1224 NC_010501.1 1355952 1357025 D KEGG: pen:PSEEN1371 hypothetical protein; hypothetical protein 1355952..1357025 Pseudomonas putida W619 6110148 YP_001748099.1 CDS PputW619_1225 NC_010501.1 1357038 1358111 D PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN1372 permease; hypothetical protein 1357038..1358111 Pseudomonas putida W619 6110149 YP_001748100.1 CDS PputW619_1226 NC_010501.1 1358244 1358951 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1358244..1358951 Pseudomonas putida W619 6110150 YP_001748101.1 CDS PputW619_1227 NC_010501.1 1359078 1359722 D PFAM: NLP/P60 protein; KEGG: pen:PSEEN1374 hypothetical protein; NLP/P60 protein 1359078..1359722 Pseudomonas putida W619 6110151 YP_001748102.1 CDS PputW619_1228 NC_010501.1 1359859 1360392 D PFAM: NLP/P60 protein; KEGG: pen:PSEEN1375 hypothetical protein; NLP/P60 protein 1359859..1360392 Pseudomonas putida W619 6110152 YP_001748103.1 CDS PputW619_1229 NC_010501.1 1360468 1361385 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_1579 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1360468..1361385) Pseudomonas putida W619 6110153 YP_001748104.1 CDS PputW619_1230 NC_010501.1 1361510 1362568 D KEGG: psp:PSPPH_1578 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1361510..1362568 Pseudomonas putida W619 6110154 YP_001748105.1 CDS PputW619_1231 NC_010501.1 1363014 1363625 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1363014..1363625 Pseudomonas putida W619 6110155 YP_001748106.1 CDS PputW619_1232 NC_010501.1 1363622 1364917 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1363622..1364917 Pseudomonas putida W619 6110156 YP_001748107.1 CDS PputW619_1233 NC_010501.1 1364914 1365564 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: psp:PSPPH_3700 cobalamin biosynthesis protein, putative; cob(II)yrinic acid a,c-diamide reductase 1364914..1365564 Pseudomonas putida W619 6110157 YP_001748108.1 CDS cobD NC_010501.1 1365561 1366469 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1365561..1366469 Pseudomonas putida W619 6110158 YP_001748109.1 CDS PputW619_1235 NC_010501.1 1366462 1367454 D cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1366462..1367454 Pseudomonas putida W619 6110159 YP_001748110.1 CDS PputW619_1236 NC_010501.1 1367451 1368905 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1367451..1368905 Pseudomonas putida W619 6110160 YP_001748111.1 CDS cobU NC_010501.1 1368907 1369428 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1368907..1369428 Pseudomonas putida W619 6110161 YP_001748112.1 CDS cobT NC_010501.1 1369425 1370480 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1369425..1370480 Pseudomonas putida W619 6110162 YP_001748113.1 CDS PputW619_1239 NC_010501.1 1370477 1371046 D TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN1386 alpha-ribazole-5'-phosphate phosphatase CobC; alpha-ribazole phosphatase 1370477..1371046 Pseudomonas putida W619 6110163 YP_001748114.1 CDS cobS NC_010501.1 1371048 1371782 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1371048..1371782 Pseudomonas putida W619 6110164 YP_001748115.1 CDS PputW619_1241 NC_010501.1 1371846 1372250 D PFAM: regulatory protein MarR; KEGG: pen:PSEEN1389 transcriptional regulator, MarR family; MarR family transcriptional regulator 1371846..1372250 Pseudomonas putida W619 6110165 YP_001748116.1 CDS PputW619_1242 NC_010501.1 1372314 1373516 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1390 transporter; major facilitator transporter 1372314..1373516 Pseudomonas putida W619 6110166 YP_001748117.1 CDS PputW619_1243 NC_010501.1 1373513 1373635 D KEGG: pen:PSEEN1391 hypothetical protein; hypothetical protein 1373513..1373635 Pseudomonas putida W619 6110167 YP_001748118.1 CDS PputW619_1244 NC_010501.1 1373703 1374233 D PFAM: glutathione peroxidase; KEGG: pen:PSEEN1392 glutathione peroxidase; glutathione peroxidase 1373703..1374233 Pseudomonas putida W619 6110168 YP_001748119.1 CDS PputW619_1245 NC_010501.1 1374431 1375696 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pen:PSEEN1396 long-chain fatty acid transporter; aromatic hydrocarbon degradation membrane protein complement(1374431..1375696) Pseudomonas putida W619 6110169 YP_001748120.1 CDS PputW619_1246 NC_010501.1 1375843 1376325 R KEGG: pen:PSEEN1397 hypothetical protein; hypothetical protein complement(1375843..1376325) Pseudomonas putida W619 6110170 YP_001748121.1 CDS PputW619_1247 NC_010501.1 1376574 1376798 R KEGG: pen:PSEEN1400 hypothetical protein; hypothetical protein complement(1376574..1376798) Pseudomonas putida W619 6110171 YP_001748122.1 CDS PputW619_1248 NC_010501.1 1377824 1378114 D KEGG: pen:PSEEN1403 hypothetical protein; hypothetical protein 1377824..1378114 Pseudomonas putida W619 6110172 YP_001748123.1 CDS PputW619_1249 NC_010501.1 1378152 1379639 D PFAM: protein of unknown function DUF195; KEGG: pen:PSEEN1404 hypothetical protein; hypothetical protein 1378152..1379639 Pseudomonas putida W619 6110173 YP_001748124.1 CDS PputW619_1250 NC_010501.1 1379611 1383087 R PFAM: Na+/solute symporter; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1405 sensory box histidine kinase/response regulator hybrid; integral membrane sensor hybrid histidine kinase complement(1379611..1383087) Pseudomonas putida W619 6110174 YP_001748125.1 CDS PputW619_1251 NC_010501.1 1383232 1383969 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mmw:Mmwyl1_0972 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1383232..1383969) Pseudomonas putida W619 6110175 YP_001748126.1 CDS PputW619_1252 NC_010501.1 1384136 1384969 D PFAM: amidohydrolase 2; KEGG: mmw:Mmwyl1_0971 amidohydrolase 2; amidohydrolase 2 1384136..1384969 Pseudomonas putida W619 6110176 YP_001748127.1 CDS PputW619_1253 NC_010501.1 1385002 1386303 D PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: mmw:Mmwyl1_0970 dicarboxylate carrier MatC domain protein; dicarboxylate carrier MatC domain-containing protein 1385002..1386303 Pseudomonas putida W619 6110177 YP_001748128.1 CDS PputW619_1254 NC_010501.1 1386368 1388287 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_0728 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1386368..1388287) Pseudomonas putida W619 6110178 YP_001748129.1 CDS PputW619_1255 NC_010501.1 1388554 1390431 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1408 acyltransferase; phospholipid/glycerol acyltransferase 1388554..1390431 Pseudomonas putida W619 6110179 YP_001748130.1 CDS PputW619_1256 NC_010501.1 1390442 1390759 R PFAM: small multidrug resistance protein; KEGG: pen:PSEEN1409 multidrug efflux pump; small multidrug resistance protein complement(1390442..1390759) Pseudomonas putida W619 6110180 YP_001748131.1 CDS rdgC NC_010501.1 1390946 1391902 R Required for efficient pilin antigenic variation; recombination associated protein complement(1390946..1391902) Pseudomonas putida W619 6110181 YP_001748132.1 CDS PputW619_1258 NC_010501.1 1392670 1393446 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pen:PSEEN1415 methionine aminopeptidase, type I Map; methionine aminopeptidase complement(1392670..1393446) Pseudomonas putida W619 6110186 YP_001748133.1 CDS PputW619_1259 NC_010501.1 1393780 1397553 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1417 assimilatory nitrate reductase; molybdopterin oxidoreductase 1393780..1397553 Pseudomonas putida W619 6110187 YP_001748134.1 CDS PputW619_1260 NC_010501.1 1397856 1400408 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN1418 nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding; nitrite reductase (NAD(P)H) large subunit 1397856..1400408 Pseudomonas putida W619 6110188 YP_001748135.1 CDS PputW619_1261 NC_010501.1 1400408 1400770 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: pen:PSEEN1419 nitrite reductase, small subunit NirD; nitrite reductase (NAD(P)H) small subunit 1400408..1400770 Pseudomonas putida W619 6110189 YP_001748136.1 CDS PputW619_1262 NC_010501.1 1401220 1402152 D TIGRFAM: pca operon transcription factor PcaQ; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1425 pca operon transcriptional activator PcaQ; LysR family transcriptional regulator 1401220..1402152 Pseudomonas putida W619 6110190 YP_001748137.1 CDS PputW619_1263 NC_010501.1 1402216 1403547 R hypothetical protein complement(1402216..1403547) Pseudomonas putida W619 6110191 YP_001748138.1 CDS PputW619_1264 NC_010501.1 1403885 1404649 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1426 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase 1403885..1404649 Pseudomonas putida W619 6110192 YP_001748139.1 CDS PputW619_1265 NC_010501.1 1404930 1405370 D PFAM: protein of unknown function DUF1232; KEGG: pen:PSEEN1427 hypothetical protein; hypothetical protein 1404930..1405370 Pseudomonas putida W619 6110193 YP_001748140.1 CDS PputW619_1266 NC_010501.1 1405471 1405809 D PFAM: helix-turn-helix domain protein; KEGG: pen:PSEEN1428 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 1405471..1405809 Pseudomonas putida W619 6110194 YP_001748141.1 CDS PputW619_1267 NC_010501.1 1405806 1406174 D KEGG: pen:PSEEN1429 hypothetical protein; hypothetical protein 1405806..1406174 Pseudomonas putida W619 6110195 YP_001748142.1 CDS PputW619_1268 NC_010501.1 1406318 1408399 R KEGG: pen:PSEEN1431 carboxy-terminal protease for penicillin-binding protein 3 Prc; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1406318..1408399) Pseudomonas putida W619 6110196 YP_001748143.1 CDS PputW619_1269 NC_010501.1 1408542 1409504 D TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN1432 alcohol dehydrogenase, zinc-containing; PIG3 family NAD(P)H quinone oxidoreductase 1408542..1409504 Pseudomonas putida W619 6110197 YP_001748144.1 CDS PputW619_1270 NC_010501.1 1409605 1410258 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1433 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(1409605..1410258) Pseudomonas putida W619 6110198 YP_001748145.1 CDS PputW619_1271 NC_010501.1 1410272 1411261 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1434 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1410272..1411261) Pseudomonas putida W619 6110199 YP_001748146.1 CDS PputW619_1272 NC_010501.1 1411263 1412069 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1435 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1411263..1412069) Pseudomonas putida W619 6110200 YP_001748147.1 CDS PputW619_1273 NC_010501.1 1412059 1412898 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1436 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1412059..1412898) Pseudomonas putida W619 6110201 YP_001748148.1 CDS PputW619_1274 NC_010501.1 1412895 1413701 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pen:PSEEN1437 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(1412895..1413701) Pseudomonas putida W619 6110202 YP_001748149.1 CDS PputW619_1275 NC_010501.1 1413811 1414875 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1438 ABC transporter, periplasmic binding protein; extracellular solute-binding protein complement(1413811..1414875) Pseudomonas putida W619 6110203 YP_001748150.1 CDS PputW619_1276 NC_010501.1 1415217 1415930 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN1439 transcriptional regulator, GntR family; GntR family transcriptional regulator 1415217..1415930 Pseudomonas putida W619 6110204 YP_001748151.1 CDS PputW619_1277 NC_010501.1 1415959 1418115 R PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN1440 transporter, mechanosensitive ion channel family protein; mechanosensitive ion channel MscS complement(1415959..1418115) Pseudomonas putida W619 6110205 YP_001748152.1 CDS PputW619_1278 NC_010501.1 1418160 1418327 R KEGG: pen:PSEEN1441 hypothetical protein; hypothetical protein complement(1418160..1418327) Pseudomonas putida W619 6110206 YP_001748153.1 CDS PputW619_1279 NC_010501.1 1419024 1419761 D KEGG: psb:Psyr_3766 hypothetical protein; hypothetical protein 1419024..1419761 Pseudomonas putida W619 6110207 YP_001748154.1 CDS PputW619_1280 NC_010501.1 1419806 1421095 R catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 complement(1419806..1421095) Pseudomonas putida W619 6110208 YP_001748155.1 CDS PputW619_1281 NC_010501.1 1421219 1421854 R PFAM: pseudouridine synthase; KEGG: pen:PSEEN1443 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(1421219..1421854) Pseudomonas putida W619 6110209 YP_001748156.1 CDS minE NC_010501.1 1421996 1422250 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(1421996..1422250) Pseudomonas putida W619 6110210 YP_001748157.1 CDS PputW619_1283 NC_010501.1 1422254 1423066 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN1445 septum site-determining protein MinD; septum site-determining protein MinD complement(1422254..1423066) Pseudomonas putida W619 6110211 YP_001748158.1 CDS minC NC_010501.1 1423166 1423912 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(1423166..1423912) Pseudomonas putida W619 6110212 YP_001748159.1 CDS PputW619_1285 NC_010501.1 1424024 1424959 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1424024..1424959 Pseudomonas putida W619 6110213 YP_001748160.1 CDS PputW619_1286 NC_010501.1 1425026 1426174 D PFAM: Patatin; KEGG: pen:PSEEN1448 hypothetical protein; patatin 1425026..1426174 Pseudomonas putida W619 6110214 YP_001748161.1 CDS PputW619_1287 NC_010501.1 1426332 1427156 R PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN1449 lipoprotein VacJ-like; VacJ family lipoprotein complement(1426332..1427156) Pseudomonas putida W619 6110215 YP_001748162.1 CDS PputW619_1288 NC_010501.1 1427149 1428447 R KEGG: pen:PSEEN1450 hypothetical protein; hypothetical protein complement(1427149..1428447) Pseudomonas putida W619 6110216 YP_001748163.1 CDS PputW619_1289 NC_010501.1 1428643 1429011 D KEGG: pen:PSEEN1451 hypothetical protein; hypothetical protein 1428643..1429011 Pseudomonas putida W619 6110217 YP_001748164.1 CDS PputW619_1290 NC_010501.1 1429051 1430616 R PFAM: glycoside hydrolase family 17; KEGG: pen:PSEEN1452 beta (1-6) glucans synthase; glycoside hydrolase family protein complement(1429051..1430616) Pseudomonas putida W619 6110218 YP_001748165.1 CDS PputW619_1291 NC_010501.1 1430814 1431674 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1453 glycine betaine-binding protein, ABC type; glycine betaine ABC transporter substrate-binding protein 1430814..1431674 Pseudomonas putida W619 6110219 YP_001748166.1 CDS PputW619_1292 NC_010501.1 1431925 1432236 D PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN1454 hypothetical protein; hypothetical protein 1431925..1432236 Pseudomonas putida W619 6110220 YP_001748167.1 CDS actP NC_010501.1 1432233 1433897 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1432233..1433897 Pseudomonas putida W619 6110221 YP_001748168.1 CDS PputW619_1294 NC_010501.1 1433963 1434115 R KEGG: pen:PSEEN1462 hypothetical protein; hypothetical protein complement(1433963..1434115) Pseudomonas putida W619 6110222 YP_001748169.1 CDS PputW619_1295 NC_010501.1 1434322 1435137 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1463 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1434322..1435137 Pseudomonas putida W619 6110223 YP_001748170.1 CDS PputW619_1296 NC_010501.1 1435258 1435446 D PFAM: carbon storage regulator; KEGG: pen:PSEEN1464 carbon storage regulator; carbon storage regulator CsrA 1435258..1435446 Pseudomonas putida W619 6110224 YP_001748171.1 CDS PputW619_1297 NC_010501.1 1435501 1435737 R PFAM: protein of unknown function UPF0270; KEGG: pen:PSEEN1465 hypothetical protein; hypothetical protein complement(1435501..1435737) Pseudomonas putida W619 6110225 YP_001748172.1 CDS PputW619_1298 NC_010501.1 1435790 1436974 R TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M20; peptidase M42 family protein; KEGG: pen:PSEEN1467 peptidase M42; peptidase M42 family hydrolase complement(1435790..1436974) Pseudomonas putida W619 6110226 YP_001748173.1 CDS PputW619_1299 NC_010501.1 1437048 1438793 R KEGG: pen:PSEEN1468 acetyltransferase, GNAT family; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; GNAT family acetyltransferase complement(1437048..1438793) Pseudomonas putida W619 6110227 YP_001748174.1 CDS PputW619_1300 NC_010501.1 1438797 1440584 R KEGG: pen:PSEEN1469 asparagine synthetase AsnB; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase amidotransferase complement(1438797..1440584) Pseudomonas putida W619 6110228 YP_001748175.1 CDS PputW619_1301 NC_010501.1 1440621 1441811 R PFAM: integrase family protein; KEGG: par:Psyc_0479 possible phage integrase; integrase family protein complement(1440621..1441811) Pseudomonas putida W619 6110229 YP_001748176.1 CDS PputW619_1302 NC_010501.1 1442023 1442775 R KEGG: mag:amb1496 hypothetical protein; hypothetical protein complement(1442023..1442775) Pseudomonas putida W619 6110230 YP_001748177.1 CDS PputW619_1303 NC_010501.1 1442772 1443461 R hypothetical protein complement(1442772..1443461) Pseudomonas putida W619 6110231 YP_001748178.1 CDS PputW619_1304 NC_010501.1 1443452 1443601 R hypothetical protein complement(1443452..1443601) Pseudomonas putida W619 6110232 YP_001748179.1 CDS PputW619_1305 NC_010501.1 1443598 1444269 R KEGG: pst:PSPTO_3944 hypothetical protein; hypothetical protein complement(1443598..1444269) Pseudomonas putida W619 6110233 YP_001748180.1 CDS PputW619_1306 NC_010501.1 1444256 1444630 R PFAM: carbon storage regulator; KEGG: hha:Hhal_1651 carbon storage regulator, CsrA; carbon storage regulator CsrA complement(1444256..1444630) Pseudomonas putida W619 6110234 YP_001748181.1 CDS PputW619_1307 NC_010501.1 1444721 1445116 R PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2243 LuxR family DNA binding protein; LuxR family transcriptional regulator complement(1444721..1445116) Pseudomonas putida W619 6110235 YP_001748182.1 CDS PputW619_1308 NC_010501.1 1445251 1445940 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2812 helix-turn-helix motif:peptidase S24, S26A and S26B; XRE family transcriptional regulator complement(1445251..1445940) Pseudomonas putida W619 6110236 YP_001748183.1 CDS PputW619_1309 NC_010501.1 1446015 1446326 D hypothetical protein 1446015..1446326 Pseudomonas putida W619 6110237 YP_001748184.1 CDS PputW619_1310 NC_010501.1 1446489 1446974 R KEGG: nme:NMB1093 hypothetical protein; hypothetical protein complement(1446489..1446974) Pseudomonas putida W619 6110238 YP_001748185.1 CDS PputW619_1311 NC_010501.1 1447152 1447430 D hypothetical protein 1447152..1447430 Pseudomonas putida W619 6110239 YP_001748186.1 CDS PputW619_1312 NC_010501.1 1447427 1447732 D hypothetical protein 1447427..1447732 Pseudomonas putida W619 6110240 YP_001748187.1 CDS PputW619_1313 NC_010501.1 1447729 1447965 D hypothetical protein 1447729..1447965 Pseudomonas putida W619 6110241 YP_001748188.1 CDS PputW619_1314 NC_010501.1 1447962 1448252 D hypothetical protein 1447962..1448252 Pseudomonas putida W619 6110242 YP_001748189.1 CDS PputW619_1315 NC_010501.1 1448249 1449019 D PFAM: BRO domain protein; KEGG: mca:MCA2642 hypothetical protein; prophage antirepressor 1448249..1449019 Pseudomonas putida W619 6110243 YP_001748190.1 CDS PputW619_1316 NC_010501.1 1449016 1449390 D hypothetical protein 1449016..1449390 Pseudomonas putida W619 6110244 YP_001748191.1 CDS PputW619_1317 NC_010501.1 1449387 1449614 D hypothetical protein 1449387..1449614 Pseudomonas putida W619 6110245 YP_001748192.1 CDS PputW619_1318 NC_010501.1 1449626 1450393 D KEGG: bbr:BB1683 phage-related hypothetical protein; hypothetical protein 1449626..1450393 Pseudomonas putida W619 6110246 YP_001748193.1 CDS PputW619_1319 NC_010501.1 1450390 1451163 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: hha:Hhal_0638 IstB domain protein ATP-binding protein; IstB ATP binding domain-containing protein 1450390..1451163 Pseudomonas putida W619 6110247 YP_001748194.1 CDS PputW619_1320 NC_010501.1 1451160 1452572 D PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0223 DnaB helicase; DnaB domain-containing protein 1451160..1452572 Pseudomonas putida W619 6110248 YP_001748195.1 CDS PputW619_1321 NC_010501.1 1452559 1453065 D hypothetical protein 1452559..1453065 Pseudomonas putida W619 6110249 YP_001748196.1 CDS PputW619_1322 NC_010501.1 1453062 1453349 D hypothetical protein 1453062..1453349 Pseudomonas putida W619 6110250 YP_001748197.1 CDS PputW619_1323 NC_010501.1 1453346 1453735 D KEGG: hch:HCH_00599 hypothetical protein; hypothetical protein 1453346..1453735 Pseudomonas putida W619 6110251 YP_001748198.1 CDS PputW619_1324 NC_010501.1 1453961 1454470 D KEGG: pap:PSPA7_5310 hypothetical protein; hypothetical protein 1453961..1454470 Pseudomonas putida W619 6110252 YP_001748199.1 CDS PputW619_1325 NC_010501.1 1454790 1454978 R hypothetical protein complement(1454790..1454978) Pseudomonas putida W619 6110253 YP_001748200.1 CDS PputW619_1326 NC_010501.1 1455170 1455397 R hypothetical protein complement(1455170..1455397) Pseudomonas putida W619 6110254 YP_001748201.1 CDS PputW619_1327 NC_010501.1 1455394 1455627 R KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein complement(1455394..1455627) Pseudomonas putida W619 6110255 YP_001748202.1 CDS PputW619_1328 NC_010501.1 1455749 1456120 D KEGG: psp:PSPPH_0656 hypothetical protein; hypothetical protein 1455749..1456120 Pseudomonas putida W619 6110256 YP_001748203.1 CDS PputW619_1329 NC_010501.1 1456120 1456437 D KEGG: psb:Psyr_4598 lipoprotein, putative; putative lipoprotein 1456120..1456437 Pseudomonas putida W619 6110257 YP_001748204.1 CDS PputW619_1330 NC_010501.1 1456488 1456643 D hypothetical protein 1456488..1456643 Pseudomonas putida W619 6110258 YP_001748205.1 CDS PputW619_1331 NC_010501.1 1456776 1457060 D hypothetical protein 1456776..1457060 Pseudomonas putida W619 6110259 YP_001748206.1 CDS PputW619_1332 NC_010501.1 1457125 1457481 D hypothetical protein 1457125..1457481 Pseudomonas putida W619 6110260 YP_001748207.1 CDS PputW619_1333 NC_010501.1 1457472 1457840 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: ecv:APECO1_3888 putative phage endonuclease; HNH endonuclease 1457472..1457840 Pseudomonas putida W619 6110261 YP_001748208.1 CDS PputW619_1334 NC_010501.1 1457968 1458351 D KEGG: pol:Bpro_2971 hypothetical protein; hypothetical protein 1457968..1458351 Pseudomonas putida W619 6110262 YP_001748209.1 CDS PputW619_1335 NC_010501.1 1458351 1460060 D PFAM: Terminase; KEGG: dvu:DVU1503 terminase, large subunit; terminase 1458351..1460060 Pseudomonas putida W619 6110263 YP_001748210.1 CDS PputW619_1336 NC_010501.1 1460072 1460236 D hypothetical protein 1460072..1460236 Pseudomonas putida W619 6110264 YP_001748211.1 CDS PputW619_1337 NC_010501.1 1460229 1461563 D TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bpm:BURPS1710b_1680 phage portal protein, HK97 family; HK97 family phage portal protein 1460229..1461563 Pseudomonas putida W619 6110265 YP_001748212.1 CDS PputW619_1338 NC_010501.1 1461560 1462306 D TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bpm:BURPS1710b_1681 gp4; HK97 family phage prohead protease 1461560..1462306 Pseudomonas putida W619 6110266 YP_001748213.1 CDS PputW619_1339 NC_010501.1 1462316 1463572 D TIGRFAM: phage major capsid protein, HK97 family; KEGG: nar:Saro_0649 phage major capsid protein, HK97; HK97 family phage major capsid protein 1462316..1463572 Pseudomonas putida W619 6110267 YP_001748214.1 CDS PputW619_1340 NC_010501.1 1463614 1463838 D hypothetical protein 1463614..1463838 Pseudomonas putida W619 6110268 YP_001748215.1 CDS PputW619_1341 NC_010501.1 1463842 1464318 D KEGG: dac:Daci_1636 hypothetical protein; hypothetical protein 1463842..1464318 Pseudomonas putida W619 6110269 YP_001748216.1 CDS PputW619_1342 NC_010501.1 1464318 1464659 D TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: pap:PSPA7_5157 phage head-tail adaptor, putative; phage head-tail adaptor 1464318..1464659 Pseudomonas putida W619 6110270 YP_001748217.1 CDS PputW619_1343 NC_010501.1 1464652 1465137 D TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein; KEGG: shw:Sputw3181_2475 phage protein, HK97 GP10 family; HK97 family phage protein 1464652..1465137 Pseudomonas putida W619 6110271 YP_001748218.1 CDS PputW619_1344 NC_010501.1 1465134 1465502 D KEGG: son:SO_2957 hypothetical protein; hypothetical protein 1465134..1465502 Pseudomonas putida W619 6110272 YP_001748219.1 CDS PputW619_1345 NC_010501.1 1465565 1466062 D KEGG: pae:PA0633 hypothetical protein; hypothetical protein 1465565..1466062 Pseudomonas putida W619 6110273 YP_001748220.1 CDS PputW619_1346 NC_010501.1 1466059 1466397 D KEGG: pen:PSEEN4181 hypothetical protein; hypothetical protein 1466059..1466397 Pseudomonas putida W619 6110274 YP_001748221.1 CDS PputW619_1347 NC_010501.1 1466427 1466684 D KEGG: pen:PSEEN4180 phage protein; phage protein 1466427..1466684 Pseudomonas putida W619 6110275 YP_001748222.1 CDS PputW619_1348 NC_010501.1 1466759 1467097 D KEGG: deb:DehaBAV1_0039 hypothetical protein; hypothetical protein 1466759..1467097 Pseudomonas putida W619 6110276 YP_001748223.1 CDS PputW619_1349 NC_010501.1 1467151 1469712 D TIGRFAM: phage tail tape measure protein, lambda family; PFAM: tail tape measure protein lambda; KEGG: rsh:Rsph17029_3328 hypothetical protein; lambda family phage tail tape measure protein 1467151..1469712 Pseudomonas putida W619 6110277 YP_001748224.1 CDS PputW619_1350 NC_010501.1 1469722 1470306 D KEGG: pst:PSPTO_4044 hypothetical protein; hypothetical protein 1469722..1470306 Pseudomonas putida W619 6110278 YP_001748225.1 CDS PputW619_1351 NC_010501.1 1470306 1470902 D KEGG: pst:PSPTO_4043 hypothetical protein; hypothetical protein 1470306..1470902 Pseudomonas putida W619 6110279 YP_001748226.1 CDS PputW619_1352 NC_010501.1 1470908 1471306 D KEGG: pst:PSPTO_2088 hypothetical protein; hypothetical protein 1470908..1471306 Pseudomonas putida W619 6110280 YP_001748227.1 CDS PputW619_1353 NC_010501.1 1471306 1476798 D PFAM: Fibronectin type III domain protein; Protein of unknown function DUF1983; KEGG: pst:PSPTO_4041 host specificity protein J, internal deletion; hypothetical protein 1471306..1476798 Pseudomonas putida W619 6110281 YP_001748228.1 CDS PputW619_1354 NC_010501.1 1477118 1477972 D hypothetical protein 1477118..1477972 Pseudomonas putida W619 6110282 YP_001748229.1 CDS PputW619_1355 NC_010501.1 1477978 1478220 D hypothetical protein 1477978..1478220 Pseudomonas putida W619 6110283 YP_001748230.1 CDS PputW619_1356 NC_010501.1 1478283 1478720 D KEGG: pmy:Pmen_3951 hypothetical protein; hypothetical protein 1478283..1478720 Pseudomonas putida W619 6110284 YP_001748231.1 CDS PputW619_1357 NC_010501.1 1478717 1479223 D KEGG: psp:PSPPH_2397 hypothetical protein; hypothetical protein 1478717..1479223 Pseudomonas putida W619 6110285 YP_001748232.1 CDS PputW619_1358 NC_010501.1 1479299 1479808 D KEGG: rha:RHA1_ro10077 hypothetical protein; hypothetical protein 1479299..1479808 Pseudomonas putida W619 6110286 YP_001748233.1 CDS mnmC NC_010501.1 1480170 1482143 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1480170..1482143) Pseudomonas putida W619 6110287 YP_001748234.1 CDS PputW619_1360 NC_010501.1 1482300 1483793 D PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN1471 hypothetical protein; hypothetical protein 1482300..1483793 Pseudomonas putida W619 6110288 YP_001748235.1 CDS PputW619_1361 NC_010501.1 1483913 1484875 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1473 hypothetical protein; hypothetical protein 1483913..1484875 Pseudomonas putida W619 6110289 YP_001748236.1 CDS PputW619_1362 NC_010501.1 1485042 1486436 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1485042..1486436) Pseudomonas putida W619 6110290 YP_001748237.1 CDS PputW619_1363 NC_010501.1 1486592 1487116 D KEGG: pen:PSEEN1475 hypothetical protein; hypothetical protein 1486592..1487116 Pseudomonas putida W619 6110291 YP_001748238.1 CDS PputW619_1364 NC_010501.1 1487127 1487426 D PFAM: BolA family protein; KEGG: pen:PSEEN1476 transcriptional regulator, BolA superfamily; BolA family protein 1487127..1487426 Pseudomonas putida W619 6110292 YP_001748239.1 CDS PputW619_1365 NC_010501.1 1487631 1488563 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN1477 hypothetical protein; hypothetical protein 1487631..1488563 Pseudomonas putida W619 6110293 YP_001748240.1 CDS PputW619_1366 NC_010501.1 1488568 1489200 D PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN1478 hypothetical protein; DSBA oxidoreductase 1488568..1489200 Pseudomonas putida W619 6110294 YP_001748241.1 CDS PputW619_1367 NC_010501.1 1489193 1491025 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1479 ABC transporter, ATP-binding protein; ABC transporter-like protein 1489193..1491025 Pseudomonas putida W619 6110295 YP_001748242.1 CDS PputW619_1368 NC_010501.1 1491141 1493597 D KEGG: pen:PSEEN1480 sensory box protein/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1491141..1493597 Pseudomonas putida W619 6110296 YP_001748243.1 CDS PputW619_1369 NC_010501.1 1493637 1494422 D KEGG: pen:PSEEN1481 hypothetical protein; hypothetical protein 1493637..1494422 Pseudomonas putida W619 6110297 YP_001748244.1 CDS PputW619_1370 NC_010501.1 1494563 1495303 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN1482 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase complement(1494563..1495303) Pseudomonas putida W619 6110298 YP_001748245.1 CDS PputW619_1371 NC_010501.1 1495347 1496018 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(1495347..1496018) Pseudomonas putida W619 6110299 YP_001748246.1 CDS PputW619_1372 NC_010501.1 1496021 1496719 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1496021..1496719) Pseudomonas putida W619 6110300 YP_001748247.1 CDS mtnA NC_010501.1 1496830 1497906 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1496830..1497906 Pseudomonas putida W619 6110301 YP_001748248.1 CDS PputW619_1374 NC_010501.1 1498221 1500992 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1498221..1500992 Pseudomonas putida W619 6110302 YP_001748249.1 CDS PputW619_1375 NC_010501.1 1501323 1502330 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1501323..1502330 Pseudomonas putida W619 6110303 YP_001748250.1 CDS PputW619_1376 NC_010501.1 1502330 1503424 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pen:PSEEN1489 bifunctional chorismate mutase/prephenate dehydratase PheA; chorismate mutase 1502330..1503424 Pseudomonas putida W619 6110304 YP_001748251.1 CDS PputW619_1377 NC_010501.1 1503585 1505825 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1503585..1505825 Pseudomonas putida W619 6110305 YP_001748252.1 CDS cmk NC_010501.1 1505822 1506508 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1505822..1506508 Pseudomonas putida W619 6110306 YP_001748253.1 CDS rpsA NC_010501.1 1506632 1508308 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1506632..1508308 Pseudomonas putida W619 6110307 YP_001748254.1 CDS ihfB NC_010501.1 1508565 1508861 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1508565..1508861 Pseudomonas putida W619 6110308 YP_001748255.1 CDS PputW619_1381 NC_010501.1 1508882 1509145 D KEGG: pst:PSPTO_1752 hypothetical protein; hypothetical protein 1508882..1509145 Pseudomonas putida W619 6110309 YP_001748256.1 CDS PputW619_1382 NC_010501.1 1509250 1510698 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pst:PSPTO_1753 hypothetical protein; beta-lactamase domain-containing protein 1509250..1510698 Pseudomonas putida W619 6110310 YP_001748257.1 CDS PputW619_1383 NC_010501.1 1511009 1512451 D KEGG: pol:Bpro_4942 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1511009..1512451 Pseudomonas putida W619 6110311 YP_001748258.1 CDS PputW619_1384 NC_010501.1 1512582 1513943 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: tcx:Tcr_1677 phosphomannomutase; phosphomannomutase 1512582..1513943 Pseudomonas putida W619 6110312 YP_001748259.1 CDS PputW619_1385 NC_010501.1 1514069 1515265 D PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4015 glycosyl transferase, group 1; glycosyl transferase group 1 protein 1514069..1515265 Pseudomonas putida W619 6110313 YP_001748260.1 CDS PputW619_1386 NC_010501.1 1515378 1516178 D PFAM: ABC-2 type transporter; KEGG: pap:PSPA7_6241 membrane subunit of A-band LPS efflux transporter; ABC-2 type transporter 1515378..1516178 Pseudomonas putida W619 6110314 YP_001748261.1 CDS PputW619_1387 NC_010501.1 1516180 1517388 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A2903 ABC-type transporter, ATPase component; ABC transporter-like protein 1516180..1517388 Pseudomonas putida W619 6110315 YP_001748262.1 CDS PputW619_1388 NC_010501.1 1517507 1518940 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: fal:FRAAL4063 hypothetical protein; type 11 methyltransferase 1517507..1518940 Pseudomonas putida W619 6110316 YP_001748263.1 CDS PputW619_1389 NC_010501.1 1518959 1521844 D PFAM: glycosyl transferase group 1; KEGG: rci:RCIX213 predicted glycosyltransferase (group 1); glycosyl transferase group 1 protein 1518959..1521844 Pseudomonas putida W619 6110317 YP_001748264.1 CDS PputW619_1390 NC_010501.1 1521841 1523460 D PFAM: glycosyl transferase group 1; KEGG: rci:RCIX212 putative glycosyltransferase (group 1); glycosyl transferase group 1 protein 1521841..1523460 Pseudomonas putida W619 6110318 YP_001748265.1 CDS PputW619_1391 NC_010501.1 1523504 1524448 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_5030 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1523504..1524448) Pseudomonas putida W619 6110319 YP_001748266.1 CDS PputW619_1392 NC_010501.1 1524501 1525610 R PFAM: acyltransferase 3; KEGG: bra:BRADO5246 conserved hypothetical protein; putative membrane protein; putative acyltransferase; acyltransferase 3 complement(1524501..1525610) Pseudomonas putida W619 6110320 YP_001748267.1 CDS PputW619_1393 NC_010501.1 1525865 1526797 D KEGG: pmu:PM0525 KpsF protein, putative; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1525865..1526797 Pseudomonas putida W619 6110321 YP_001748268.1 CDS PputW619_1394 NC_010501.1 1526918 1527466 R KEGG: mfa:Mfla_2010 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1526918..1527466) Pseudomonas putida W619 6110322 YP_001748269.1 CDS PputW619_1395 NC_010501.1 1527466 1528356 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: psb:Psyr_0924 glucose-1-phosphate thymidylyltransferase, long form; glucose-1-phosphate thymidylyltransferase complement(1527466..1528356) Pseudomonas putida W619 6110323 YP_001748270.1 CDS PputW619_1396 NC_010501.1 1528353 1529258 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pst:PSPTO_1080 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1528353..1529258) Pseudomonas putida W619 6110324 YP_001748271.1 CDS PputW619_1397 NC_010501.1 1529255 1530331 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pst:PSPTO_1081 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1529255..1530331) Pseudomonas putida W619 6110325 YP_001748272.1 CDS PputW619_1398 NC_010501.1 1530711 1532870 R KEGG: syw:SYNW0417 hypothetical protein; hypothetical protein complement(1530711..1532870) Pseudomonas putida W619 6110326 YP_001748273.1 CDS PputW619_1399 NC_010501.1 1532938 1534746 R PFAM: Capsule polysaccharide biosynthesis protein; KEGG: cko:CKO_00746 hypothetical protein; capsule polysaccharide biosynthesis protein complement(1532938..1534746) Pseudomonas putida W619 6110327 YP_001748274.1 CDS PputW619_1400 NC_010501.1 1534743 1535798 R KEGG: hau:Haur_2166 glycosyl transferase group 1; hypothetical protein complement(1534743..1535798) Pseudomonas putida W619 6110328 YP_001748275.1 CDS PputW619_1401 NC_010501.1 1535852 1538278 R PFAM: glycosyl transferase family 2; KEGG: psp:PSPPH_0975 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1535852..1538278) Pseudomonas putida W619 6110329 YP_001748276.1 CDS PputW619_1402 NC_010501.1 1538278 1540836 R PFAM: glycosyl transferase family 2; KEGG: psb:Psyr_0930 glycosyl transferase, family 2; glycosyl transferase family protein complement(1538278..1540836) Pseudomonas putida W619 6110330 YP_001748277.1 CDS PputW619_1403 NC_010501.1 1540982 1542430 R KEGG: psb:Psyr_0931 hemolysin-type calcium-binding region; hemolysin-type calcium-binding region complement(1540982..1542430) Pseudomonas putida W619 6110331 YP_001748278.1 CDS PputW619_1404 NC_010501.1 1542448 1543335 R KEGG: psb:Psyr_0932 hypothetical protein; hypothetical protein complement(1542448..1543335) Pseudomonas putida W619 6110332 YP_001748279.1 CDS PputW619_1405 NC_010501.1 1543896 1545707 D KEGG: psp:PSPPH_0980 alkaline protease secretion ATP-binding protein AprD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 1543896..1545707 Pseudomonas putida W619 6110333 YP_001748280.1 CDS PputW619_1406 NC_010501.1 1545720 1547045 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: psb:Psyr_0934 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 1545720..1547045 Pseudomonas putida W619 6110334 YP_001748281.1 CDS PputW619_1407 NC_010501.1 1547042 1548457 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: psb:Psyr_0935 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 1547042..1548457 Pseudomonas putida W619 6110335 YP_001748282.1 CDS PputW619_1408 NC_010501.1 1548725 1549756 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: psb:Psyr_0916 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1548725..1549756 Pseudomonas putida W619 6110336 YP_001748283.1 CDS PputW619_1409 NC_010501.1 1549756 1550652 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: psp:PSPPH_0952 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1549756..1550652 Pseudomonas putida W619 6110337 YP_001748284.1 CDS PputW619_1410 NC_010501.1 1550649 1551794 D PFAM: glycosyl transferase group 1; KEGG: sgl:SG1120 mannosyltransferase B; glycosyl transferase group 1 protein 1550649..1551794 Pseudomonas putida W619 6110338 YP_001748285.1 CDS PputW619_1411 NC_010501.1 1551791 1552921 D PFAM: glycosyl transferase group 1; KEGG: sgl:SG1121 glycosyltransferase; glycosyl transferase group 1 protein 1551791..1552921 Pseudomonas putida W619 6110339 YP_001748286.1 CDS PputW619_1412 NC_010501.1 1552981 1553949 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1552981..1553949 Pseudomonas putida W619 6110340 YP_001748287.1 CDS PputW619_1413 NC_010501.1 1553946 1554950 D PFAM: glycosyl transferase family 4; KEGG: pen:PSEEN1505 glycosyl transferase WbpL; glycosyl transferase family protein 1553946..1554950 Pseudomonas putida W619 6110341 YP_001748288.1 CDS PputW619_1414 NC_010501.1 1554995 1557004 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: pen:PSEEN1506 dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase WbpM; polysaccharide biosynthesis protein CapD 1554995..1557004 Pseudomonas putida W619 6110342 YP_001748289.1 CDS PputW619_1415 NC_010501.1 1557191 1557523 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: pen:PSEEN1508 hypothetical protein; helix-hairpin-helix repeat-containing competence protein ComEA 1557191..1557523 Pseudomonas putida W619 6110343 YP_001748290.1 CDS PputW619_1416 NC_010501.1 1557613 1557780 R KEGG: pen:PSEEN1509 hypothetical protein; hypothetical protein complement(1557613..1557780) Pseudomonas putida W619 6110344 YP_001748291.1 CDS PputW619_1417 NC_010501.1 1557964 1558665 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1557964..1558665 Pseudomonas putida W619 6110345 YP_001748292.1 CDS PputW619_1418 NC_010501.1 1558783 1559976 D PFAM: O-antigen polymerase; KEGG: pae:PA4999 O-antigen ligase, WaaL; O-antigen polymerase 1558783..1559976 Pseudomonas putida W619 6110346 YP_001748293.1 CDS PputW619_1419 NC_010501.1 1559973 1560863 R PFAM: glycosyl transferase family 2; KEGG: pap:PSPA7_5735 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(1559973..1560863) Pseudomonas putida W619 6110347 YP_001748294.1 CDS PputW619_1420 NC_010501.1 1561364 1561645 D hypothetical protein 1561364..1561645 Pseudomonas putida W619 6110348 YP_001748295.1 CDS PputW619_1421 NC_010501.1 1561659 1561922 D KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 1561659..1561922 Pseudomonas putida W619 6110349 YP_001748296.1 CDS PputW619_1422 NC_010501.1 1562054 1562896 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1562054..1562896) Pseudomonas putida W619 6110350 YP_001748297.1 CDS PputW619_1423 NC_010501.1 1562933 1563772 R KEGG: pen:PSEEN1513 hypothetical protein; hypothetical protein complement(1562933..1563772) Pseudomonas putida W619 6110351 YP_001748298.1 CDS PputW619_1424 NC_010501.1 1563910 1564911 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pen:PSEEN1511 zinc-containing alcohol dehydrogenase; alcohol dehydrogenase complement(1563910..1564911) Pseudomonas putida W619 6110352 YP_001748299.1 CDS PputW619_1425 NC_010501.1 1565128 1565889 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1512 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 1565128..1565889 Pseudomonas putida W619 6110353 YP_001748300.1 CDS PputW619_1426 NC_010501.1 1566012 1566293 D KEGG: pen:PSEEN3527 lipoprotein; lipoprotein 1566012..1566293 Pseudomonas putida W619 6110354 YP_001748301.1 CDS PputW619_1427 NC_010501.1 1566536 1568476 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1517 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 1566536..1568476 Pseudomonas putida W619 6110355 YP_001748302.1 CDS PputW619_1428 NC_010501.1 1568600 1569790 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1518 benzoate membrane transport protein (MFS superfamily); benzoate transporter complement(1568600..1569790) Pseudomonas putida W619 6110356 YP_001748303.1 CDS PputW619_1429 NC_010501.1 1569935 1570537 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1519 glutathione S-transferase; glutathione S-transferase domain-containing protein 1569935..1570537 Pseudomonas putida W619 6110357 YP_001748304.1 CDS PputW619_1430 NC_010501.1 1572440 1572811 R PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1520 hypothetical protein; glutaredoxin complement(1572440..1572811) Pseudomonas putida W619 6110358 YP_001748305.1 CDS folE NC_010501.1 1572869 1573414 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1572869..1573414) Pseudomonas putida W619 6110359 YP_001748306.1 CDS PputW619_1432 NC_010501.1 1573485 1574045 R PFAM: Smr protein/MutS2; KEGG: pen:PSEEN1522 hypothetical protein; Smr protein/MutS2 complement(1573485..1574045) Pseudomonas putida W619 6110360 YP_001748307.1 CDS PputW619_1433 NC_010501.1 1574142 1574462 R KEGG: pen:PSEEN1523 hypothetical protein; hypothetical protein complement(1574142..1574462) Pseudomonas putida W619 6110361 YP_001748308.1 CDS PputW619_1434 NC_010501.1 1574552 1575142 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN1524 isochorismatase; isochorismatase hydrolase complement(1574552..1575142) Pseudomonas putida W619 6110362 YP_001748309.1 CDS PputW619_1435 NC_010501.1 1575322 1576230 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1575322..1576230 Pseudomonas putida W619 6110363 YP_001748310.1 CDS PputW619_1436 NC_010501.1 1576313 1577101 R KEGG: pen:PSEEN1526 hypothetical protein; hypothetical protein complement(1576313..1577101) Pseudomonas putida W619 6110364 YP_001748311.1 CDS PputW619_1437 NC_010501.1 1577183 1578145 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1527 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(1577183..1578145) Pseudomonas putida W619 6110365 YP_001748312.1 CDS PputW619_1438 NC_010501.1 1578318 1579409 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1578318..1579409 Pseudomonas putida W619 6110366 YP_001748313.1 CDS PputW619_1439 NC_010501.1 1579559 1580713 D PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1530 transporter, MFS family; major facilitator transporter 1579559..1580713 Pseudomonas putida W619 6110367 YP_001748314.1 CDS PputW619_1440 NC_010501.1 1580713 1581249 D KEGG: pen:PSEEN1531 oxidase; oxidase 1580713..1581249 Pseudomonas putida W619 6110368 YP_001748315.1 CDS PputW619_1441 NC_010501.1 1581367 1581639 R KEGG: pen:PSEEN1532 hypothetical protein; hypothetical protein complement(1581367..1581639) Pseudomonas putida W619 6110369 YP_001748316.1 CDS PputW619_1442 NC_010501.1 1581908 1582432 D PFAM: Ankyrin; KEGG: pen:PSEEN1535 hypothetical protein; ankyrin 1581908..1582432 Pseudomonas putida W619 6110370 YP_001748317.1 CDS PputW619_1443 NC_010501.1 1582492 1583022 D KEGG: pen:PSEEN1536 hypothetical protein; hypothetical protein 1582492..1583022 Pseudomonas putida W619 6110371 YP_001748318.1 CDS PputW619_1444 NC_010501.1 1583290 1583574 D hypothetical protein 1583290..1583574 Pseudomonas putida W619 6110372 YP_001748319.1 CDS PputW619_1445 NC_010501.1 1583943 1584881 R PFAM: zinc/iron permease; KEGG: pen:PSEEN1537 divalent heavy-metal cations transporter (ZIP family); zinc/iron permease complement(1583943..1584881) Pseudomonas putida W619 6110373 YP_001748320.1 CDS PputW619_1446 NC_010501.1 1585008 1585202 D KEGG: pen:PSEEN1538 hypothetical protein; hypothetical protein 1585008..1585202 Pseudomonas putida W619 6110374 YP_001748321.1 CDS PputW619_1447 NC_010501.1 1585351 1587423 D PFAM: sulfatase; KEGG: pen:PSEEN1540 membrane sulfatase; sulfatase 1585351..1587423 Pseudomonas putida W619 6110375 YP_001748322.1 CDS PputW619_1448 NC_010501.1 1587639 1587875 D KEGG: pen:PSEEN1541 hypothetical protein; hypothetical protein 1587639..1587875 Pseudomonas putida W619 6110376 YP_001748323.1 CDS PputW619_1449 NC_010501.1 1588051 1588383 D PFAM: protein of unknown function DUF1260; KEGG: pen:PSEEN1542 hypothetical protein; hypothetical protein 1588051..1588383 Pseudomonas putida W619 6110377 YP_001748324.1 CDS PputW619_1450 NC_010501.1 1588442 1589242 R KEGG: pen:PSEEN1543 cytochrome c; cytochrome c complement(1588442..1589242) Pseudomonas putida W619 6110378 YP_001748325.1 CDS PputW619_1451 NC_010501.1 1589769 1590503 D PFAM: glutamine amidotransferase class-I; KEGG: pen:PSEEN1544 glutamine amidotransferase, class I; amidotransferase 1589769..1590503 Pseudomonas putida W619 6110379 YP_001748326.1 CDS PputW619_1452 NC_010501.1 1590536 1591507 R PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1545 magnesium/cobalt transporter, MIT family; Mg2 transporter protein CorA family protein complement(1590536..1591507) Pseudomonas putida W619 6110380 YP_001748327.1 CDS PputW619_1453 NC_010501.1 1591571 1592290 R KEGG: pen:PSEEN1546 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1591571..1592290) Pseudomonas putida W619 6110381 YP_001748328.1 CDS PputW619_1454 NC_010501.1 1592408 1593097 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1592408..1593097) Pseudomonas putida W619 6110382 YP_001748329.1 CDS PputW619_1455 NC_010501.1 1593590 1594486 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Phosphogluconate dehydrogenase, NAD-binding, putative-like; KEGG: spe:Spro_2089 phosphogluconate dehydrogenase, NAD-binding, putative-like protein; phosphogluconate dehydrogenase complement(1593590..1594486) Pseudomonas putida W619 6110384 YP_001748330.1 CDS PputW619_1456 NC_010501.1 1594562 1595788 R PFAM: outer membrane porin; KEGG: pfl:PFL_1440 phenylacetic acid-specific porin; outer membrane porin complement(1594562..1595788) Pseudomonas putida W619 6110385 YP_001748331.1 CDS PputW619_1457 NC_010501.1 1595858 1597174 R PFAM: sodium:dicarboxylate symporter; KEGG: bch:Bcen2424_2873 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(1595858..1597174) Pseudomonas putida W619 6110386 YP_001748332.1 CDS PputW619_1458 NC_010501.1 1597227 1598090 R PFAM: amidohydrolase 2; KEGG: bja:blr3839 putative dicarboxylic acid hydrolase; amidohydrolase 2 complement(1597227..1598090) Pseudomonas putida W619 6110387 YP_001748333.1 CDS PputW619_1459 NC_010501.1 1598172 1599107 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo2546 putative nitrogen assimilation regulatory protein; LysR family transcriptional regulator complement(1598172..1599107) Pseudomonas putida W619 6110388 YP_001748334.1 CDS PputW619_1460 NC_010501.1 1599231 1601369 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1548 TonB-dependent ferric siderophore receptor; TonB-dependent siderophore receptor complement(1599231..1601369) Pseudomonas putida W619 6110389 YP_001748335.1 CDS PputW619_1461 NC_010501.1 1601492 1601872 R KEGG: pen:PSEEN1549 hypothetical protein; hypothetical protein complement(1601492..1601872) Pseudomonas putida W619 6110390 YP_001748336.1 CDS PputW619_1462 NC_010501.1 1601968 1603161 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1555 transport protein (MFS superfamily); major facilitator transporter complement(1601968..1603161) Pseudomonas putida W619 6110391 YP_001748337.1 CDS fabG NC_010501.1 1603242 1603991 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1603242..1603991) Pseudomonas putida W619 6110392 YP_001748338.1 CDS PputW619_1464 NC_010501.1 1604067 1605044 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1558 transcriptional regulator, LysR family; LysR family transcriptional regulator 1604067..1605044 Pseudomonas putida W619 6110393 YP_001748339.1 CDS PputW619_1465 NC_010501.1 1605423 1605893 R KEGG: pen:PSEEN1559 hypothetical protein; GreA/GreB family elongation factor complement(1605423..1605893) Pseudomonas putida W619 6110394 YP_001748340.1 CDS PputW619_1466 NC_010501.1 1605896 1606288 R KEGG: pen:PSEEN1560 hypothetical protein; hypothetical protein complement(1605896..1606288) Pseudomonas putida W619 6110395 YP_001748341.1 CDS PputW619_1467 NC_010501.1 1606419 1607552 D KEGG: pen:PSEEN1561 hypothetical protein; hypothetical protein 1606419..1607552 Pseudomonas putida W619 6110396 YP_001748342.1 CDS PputW619_1468 NC_010501.1 1607601 1608170 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1607601..1608170 Pseudomonas putida W619 6110397 YP_001748343.1 CDS PputW619_1469 NC_010501.1 1608229 1608657 R PFAM: OsmC family protein; KEGG: pen:PSEEN1563 organic hydroperoxide resistance protein; OsmC family protein complement(1608229..1608657) Pseudomonas putida W619 6110398 YP_001748344.1 CDS PputW619_1470 NC_010501.1 1608799 1609254 R PFAM: regulatory protein MarR; KEGG: pen:PSEEN1564 transcriptional regulator (MarR family); MarR family transcriptional regulator complement(1608799..1609254) Pseudomonas putida W619 6110399 YP_001748345.1 CDS PputW619_1471 NC_010501.1 1609310 1610266 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1565 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1609310..1610266) Pseudomonas putida W619 6110400 YP_001748346.1 CDS PputW619_1472 NC_010501.1 1610344 1611129 D PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1566 hypothetical protein; hypothetical protein 1610344..1611129 Pseudomonas putida W619 6110401 YP_001748347.1 CDS PputW619_1473 NC_010501.1 1611148 1611999 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1567 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1611148..1611999) Pseudomonas putida W619 6110402 YP_001748348.1 CDS PputW619_1474 NC_010501.1 1612096 1612314 D PFAM: protein of unknown function DUF1127; KEGG: pen:PSEEN1568 hypothetical protein; hypothetical protein 1612096..1612314 Pseudomonas putida W619 6110403 YP_001748349.1 CDS PputW619_1475 NC_010501.1 1612383 1613729 R KEGG: pen:PSEEN1570 phospho-2-dehydro-3-deoxyheptonate aldolase, class II; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1612383..1613729) Pseudomonas putida W619 6110404 YP_001748350.1 CDS PputW619_1476 NC_010501.1 1613815 1614603 D KEGG: pen:PSEEN1571 hypothetical protein; hypothetical protein 1613815..1614603 Pseudomonas putida W619 6110405 YP_001748351.1 CDS PputW619_1477 NC_010501.1 1615072 1616751 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN1572 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase 1615072..1616751 Pseudomonas putida W619 6110406 YP_001748352.1 CDS PputW619_1478 NC_010501.1 1616866 1617633 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pen:PSEEN1580 aromatic ring-opening dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B complement(1616866..1617633) Pseudomonas putida W619 6110407 YP_001748353.1 CDS PputW619_1479 NC_010501.1 1617735 1618382 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1617735..1618382 Pseudomonas putida W619 6110408 YP_001748354.1 CDS PputW619_1480 NC_010501.1 1618526 1619413 R putative metalloprotease; heat shock protein HtpX complement(1618526..1619413) Pseudomonas putida W619 6110409 YP_001748355.1 CDS PputW619_1481 NC_010501.1 1619706 1620917 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1619706..1620917) Pseudomonas putida W619 6110410 YP_001748356.1 CDS PputW619_1482 NC_010501.1 1621086 1621487 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1621086..1621487 Pseudomonas putida W619 6110411 YP_001748357.1 CDS PputW619_1483 NC_010501.1 1621490 1621978 D PFAM: glutathione peroxidase; KEGG: pen:PSEEN1585 glutathione peroxidase; glutathione peroxidase 1621490..1621978 Pseudomonas putida W619 6110412 YP_001748358.1 CDS PputW619_1484 NC_010501.1 1621968 1624325 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1586 sensor histidine kinase/response regulator hybrid; histidine kinase complement(1621968..1624325) Pseudomonas putida W619 6110413 YP_001748359.1 CDS PputW619_1485 NC_010501.1 1624402 1625289 D PFAM: protein of unknown function DUF815; KEGG: pen:PSEEN1587 hypothetical protein; hypothetical protein 1624402..1625289 Pseudomonas putida W619 6110414 YP_001748360.1 CDS PputW619_1486 NC_010501.1 1625290 1625772 D KEGG: pen:PSEEN1588 hypothetical protein; hypothetical protein 1625290..1625772 Pseudomonas putida W619 6110415 YP_001748361.1 CDS PputW619_1487 NC_010501.1 1625866 1626633 R KEGG: pen:PSEEN1589 hypothetical protein; hypothetical protein complement(1625866..1626633) Pseudomonas putida W619 6110416 YP_001748362.1 CDS PputW619_1488 NC_010501.1 1627559 1629025 R KEGG: psb:Psyr_2035 hypothetical protein; hypothetical protein complement(1627559..1629025) Pseudomonas putida W619 6110422 YP_001748363.1 CDS PputW619_1489 NC_010501.1 1629107 1631296 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: psb:Psyr_2034 outer membrane autotransporter barrel; outer membrane autotransporter complement(1629107..1631296) Pseudomonas putida W619 6110423 YP_001748364.1 CDS PputW619_1490 NC_010501.1 1631482 1633476 R KEGG: psb:Psyr_2033 hypothetical protein; hypothetical protein complement(1631482..1633476) Pseudomonas putida W619 6110424 YP_001748365.1 CDS PputW619_1491 NC_010501.1 1634063 1639039 R TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2040 YD repeat; YD repeat-containing protein complement(1634063..1639039) Pseudomonas putida W619 6110425 YP_001748366.1 CDS PputW619_1492 NC_010501.1 1639227 1641080 D KEGG: pst:PSPTO_2232 hypothetical protein; hypothetical protein 1639227..1641080 Pseudomonas putida W619 6110426 YP_001748367.1 CDS PputW619_1493 NC_010501.1 1641167 1643692 D KEGG: psb:Psyr_2041 hypothetical protein; hypothetical protein 1641167..1643692 Pseudomonas putida W619 6110427 YP_001748368.1 CDS PputW619_1494 NC_010501.1 1643689 1645974 D KEGG: pst:PSPTO_2236 hypothetical protein; hypothetical protein 1643689..1645974 Pseudomonas putida W619 6110428 YP_001748369.1 CDS PputW619_1495 NC_010501.1 1646004 1648889 D KEGG: psb:Psyr_2042 hypothetical protein; hypothetical protein 1646004..1648889 Pseudomonas putida W619 6110429 YP_001748370.1 CDS PputW619_1496 NC_010501.1 1648952 1649446 D KEGG: pst:PSPTO_2238 lipoprotein, putative; putative lipoprotein 1648952..1649446 Pseudomonas putida W619 6110430 YP_001748371.1 CDS PputW619_1497 NC_010501.1 1649471 1653322 D PFAM: YD repeat-containing protein; KEGG: psb:Psyr_2044 YD repeat; YD repeat-/RHS repeat-containing protein 1649471..1653322 Pseudomonas putida W619 6110431 YP_001748372.1 CDS PputW619_1498 NC_010501.1 1653400 1654479 R PFAM: Fimbrial protein; KEGG: pst:PSPTO_2227 fimbrial protein, putative; fimbrial protein complement(1653400..1654479) Pseudomonas putida W619 6110432 YP_001748373.1 CDS PputW619_1499 NC_010501.1 1654546 1657044 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pst:PSPTO_2228 outer membrane usher protein FimD; fimbrial biogenesis outer membrane usher protein complement(1654546..1657044) Pseudomonas putida W619 6110433 YP_001748374.1 CDS PputW619_1500 NC_010501.1 1657078 1657815 R PFAM: pili assembly chaperone; KEGG: psb:Psyr_2038 pili assembly chaperone:bacterial pili assembly chaperone; pili assembly chaperone complement(1657078..1657815) Pseudomonas putida W619 6110434 YP_001748375.1 CDS PputW619_1501 NC_010501.1 1657877 1658422 R PFAM: Fimbrial protein; KEGG: pst:PSPTO_2230 type I pilus biogensis protein FimA; fimbrial protein complement(1657877..1658422) Pseudomonas putida W619 6110435 YP_001748376.1 CDS PputW619_1502 NC_010501.1 1658614 1659105 R KEGG: pen:PSEEN1593 hypothetical protein; hypothetical protein complement(1658614..1659105) Pseudomonas putida W619 6110436 YP_001748377.1 CDS fadE NC_010501.1 1659102 1661549 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1659102..1661549) Pseudomonas putida W619 6110437 YP_001748378.1 CDS PputW619_1504 NC_010501.1 1661773 1662396 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1595 glutathione S-transferase; glutathione S-transferase domain-containing protein 1661773..1662396 Pseudomonas putida W619 6110438 YP_001748379.1 CDS PputW619_1505 NC_010501.1 1662529 1663461 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1596 ABC transporter, ATP-binding protein; ABC transporter-like protein 1662529..1663461 Pseudomonas putida W619 6110439 YP_001748380.1 CDS PputW619_1506 NC_010501.1 1663458 1664237 D PFAM: ABC-2 type transporter; KEGG: pen:PSEEN1597 ABC transporter, permease protein; ABC-2 type transporter 1663458..1664237 Pseudomonas putida W619 6110440 YP_001748381.1 CDS PputW619_1507 NC_010501.1 1664121 1664747 R KEGG: pen:PSEEN1598 hypothetical protein; hypothetical protein complement(1664121..1664747) Pseudomonas putida W619 6110441 YP_001748382.1 CDS PputW619_1508 NC_010501.1 1664890 1667103 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: psb:Psyr_1632 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2; DNA internalization-related competence protein ComEC/Rec2 1664890..1667103 Pseudomonas putida W619 6110442 YP_001748383.1 CDS PputW619_1509 NC_010501.1 1667215 1667850 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN1601 transporter, MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1667215..1667850 Pseudomonas putida W619 6110443 YP_001748384.1 CDS PputW619_1510 NC_010501.1 1667847 1668281 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN1602 biopolymer transport protein ExbD/TolR family; biopolymer transport protein ExbD/TolR 1667847..1668281 Pseudomonas putida W619 6110444 YP_001748385.1 CDS lpxK NC_010501.1 1668281 1669291 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1668281..1669291 Pseudomonas putida W619 6110445 YP_001748386.1 CDS PputW619_1512 NC_010501.1 1669336 1669521 D PFAM: protein of unknown function DUF343; KEGG: pen:PSEEN1604 hypothetical protein; hypothetical protein 1669336..1669521 Pseudomonas putida W619 6110446 YP_001748387.1 CDS PputW619_1513 NC_010501.1 1669518 1670282 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1669518..1670282 Pseudomonas putida W619 6110447 YP_001748388.1 CDS PputW619_1514 NC_010501.1 1670282 1670746 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pen:PSEEN1606 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1670282..1670746 Pseudomonas putida W619 6110448 YP_001748389.1 CDS murB NC_010501.1 1670743 1671762 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1670743..1671762 Pseudomonas putida W619 6110449 YP_001748390.1 CDS PputW619_1516 NC_010501.1 1671844 1675062 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1608 ribonuclease E Rne; ribonuclease complement(1671844..1675062) Pseudomonas putida W619 6110450 YP_001748391.1 CDS PputW619_1517 NC_010501.1 1675829 1676830 D KEGG: pen:PSEEN1609 23S rRNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1675829..1676830 Pseudomonas putida W619 6110451 YP_001748392.1 CDS PputW619_1518 NC_010501.1 1676834 1677514 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN1610 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase 1676834..1677514 Pseudomonas putida W619 6110452 YP_001748393.1 CDS PputW619_1519 NC_010501.1 1677517 1678542 D TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: pen:PSEEN1611 peptidase SppA; signal peptide peptidase SppA, 36K type 1677517..1678542 Pseudomonas putida W619 6110453 YP_001748394.1 CDS PputW619_1520 NC_010501.1 1678635 1679213 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1678635..1679213) Pseudomonas putida W619 6110454 YP_001748395.1 CDS PputW619_1521 NC_010501.1 1679310 1679837 D PFAM: protein of unknown function DUF177; KEGG: pen:PSEEN1614 hypothetical protein; hypothetical protein 1679310..1679837 Pseudomonas putida W619 6110455 YP_001748396.1 CDS rpmF NC_010501.1 1679851 1680033 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1679851..1680033 Pseudomonas putida W619 6110456 YP_001748397.1 CDS PputW619_1523 NC_010501.1 1680067 1681047 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1680067..1681047 Pseudomonas putida W619 6110457 YP_001748398.1 CDS PputW619_1524 NC_010501.1 1681175 1682113 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: pen:PSEEN1617 malonyl-CoA-[acyl-carrier-protein] transacylase; malonyl CoA-acyl carrier protein transacylase 1681175..1682113 Pseudomonas putida W619 6110458 YP_001748399.1 CDS fabG NC_010501.1 1682130 1682870 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1682130..1682870 Pseudomonas putida W619 6110459 YP_001748400.1 CDS acpP NC_010501.1 1683074 1683310 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1683074..1683310 Pseudomonas putida W619 6110460 YP_001748401.1 CDS PputW619_1527 NC_010501.1 1683485 1684729 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1683485..1684729 Pseudomonas putida W619 6110461 YP_001748402.1 CDS PputW619_1528 NC_010501.1 1684729 1685544 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1684729..1685544 Pseudomonas putida W619 6110462 YP_001748403.1 CDS PputW619_1529 NC_010501.1 1685549 1686712 D PFAM: aminodeoxychorismate lyase; KEGG: pen:PSEEN1623 hypothetical protein; aminodeoxychorismate lyase 1685549..1686712 Pseudomonas putida W619 6110463 YP_001748404.1 CDS tmk NC_010501.1 1686731 1687354 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1686731..1687354 Pseudomonas putida W619 6110464 YP_001748405.1 CDS PputW619_1531 NC_010501.1 1687347 1688333 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1687347..1688333 Pseudomonas putida W619 6110465 YP_001748406.1 CDS PputW619_1532 NC_010501.1 1688364 1689146 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1627 deoxyribonuclease, TatD family; TatD family hydrolase 1688364..1689146 Pseudomonas putida W619 6110466 YP_001748407.1 CDS PputW619_1533 NC_010501.1 1689418 1690551 R PFAM: aminotransferase class V; KEGG: pen:PSEEN1628 hypothetical protein; class V aminotransferase complement(1689418..1690551) Pseudomonas putida W619 6110467 YP_001748408.1 CDS PputW619_1534 NC_010501.1 1690623 1691258 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN1629 transcriptional regulator, TetR family; TetR family transcriptional regulator 1690623..1691258 Pseudomonas putida W619 6110468 YP_001748409.1 CDS PputW619_1535 NC_010501.1 1691366 1692334 D PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN1630 molybdenum cofactor biosynthesis protein A; molybdenum cofactor synthesis domain-containing protein 1691366..1692334 Pseudomonas putida W619 6110469 YP_001748410.1 CDS PputW619_1536 NC_010501.1 1692400 1693005 D KEGG: pen:PSEEN1631 lipoprotein; lipoprotein 1692400..1693005 Pseudomonas putida W619 6110470 YP_001748411.1 CDS PputW619_1537 NC_010501.1 1693016 1693576 D PFAM: protein of unknown function DUF1285; KEGG: pen:PSEEN1632 hypothetical protein; hypothetical protein 1693016..1693576 Pseudomonas putida W619 6110471 YP_001748412.1 CDS PputW619_1538 NC_010501.1 1693787 1694983 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1693787..1694983) Pseudomonas putida W619 6110473 YP_001748413.1 CDS PputW619_1539 NC_010501.1 1695271 1697286 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1695271..1697286 Pseudomonas putida W619 6110474 YP_001748414.1 CDS gltX NC_010501.1 1697432 1698913 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1697432..1698913 Pseudomonas putida W619 6110475 YP_001748415.1 CDS PputW619_1541 NC_010501.1 1700057 1700596 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN1643 transcriptional regulator, TetR family; TetR family transcriptional regulator 1700057..1700596 Pseudomonas putida W619 6110482 YP_001748416.1 CDS PputW619_1542 NC_010501.1 1700620 1701453 D KEGG: pen:PSEEN1644 hydrolase; hydrolase 1700620..1701453 Pseudomonas putida W619 6110483 YP_001748417.1 CDS PputW619_1543 NC_010501.1 1701497 1701931 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN1645 hypothetical protein; thioesterase superfamily protein 1701497..1701931 Pseudomonas putida W619 6110484 YP_001748418.1 CDS PputW619_1544 NC_010501.1 1701983 1702954 D PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN1646 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1701983..1702954 Pseudomonas putida W619 6110485 YP_001748419.1 CDS PputW619_1545 NC_010501.1 1703103 1703546 D PFAM: heat shock protein Hsp20; KEGG: pen:PSEEN1647 small heat-shock protein IbpA; heat shock protein Hsp20 1703103..1703546 Pseudomonas putida W619 6110486 YP_001748420.1 CDS PputW619_1546 NC_010501.1 1703666 1706962 R KEGG: pen:PSEEN1648 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1703666..1706962) Pseudomonas putida W619 6110487 YP_001748421.1 CDS PputW619_1547 NC_010501.1 1707024 1707902 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1649 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1707024..1707902) Pseudomonas putida W619 6110488 YP_001748422.1 CDS PputW619_1548 NC_010501.1 1708033 1709466 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1708033..1709466 Pseudomonas putida W619 6110489 YP_001748423.1 CDS leuD NC_010501.1 1709463 1710107 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1709463..1710107 Pseudomonas putida W619 6110490 YP_001748424.1 CDS PputW619_1550 NC_010501.1 1710257 1711021 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_2065 methlytransferase, UbiE/COQ5 family; type 11 methyltransferase 1710257..1711021 Pseudomonas putida W619 6110491 YP_001748425.1 CDS PputW619_1551 NC_010501.1 1711076 1712158 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1711076..1712158 Pseudomonas putida W619 6110492 YP_001748426.1 CDS PputW619_1552 NC_010501.1 1712222 1713334 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1712222..1713334 Pseudomonas putida W619 6110493 YP_001748427.1 CDS PputW619_1553 NC_010501.1 1713476 1714480 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1713476..1714480 Pseudomonas putida W619 6110494 YP_001748428.1 CDS PputW619_1554 NC_010501.1 1714551 1717241 D PFAM: Peptidoglycan-binding LysM; KEGG: pen:PSEEN1688 hypothetical protein; peptidoglycan-binding LysM 1714551..1717241 Pseudomonas putida W619 6110495 YP_001748429.1 CDS truA NC_010501.1 1717340 1718194 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1717340..1718194 Pseudomonas putida W619 6110496 YP_001748430.1 CDS PputW619_1556 NC_010501.1 1718255 1718875 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1718255..1718875 Pseudomonas putida W619 6110497 YP_001748431.1 CDS PputW619_1557 NC_010501.1 1719099 1719992 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1719099..1719992 Pseudomonas putida W619 6110498 YP_001748432.1 CDS PputW619_1558 NC_010501.1 1719992 1721278 D TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: pen:PSEEN1692 folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1719992..1721278 Pseudomonas putida W619 6110499 YP_001748433.1 CDS PputW619_1559 NC_010501.1 1721283 1721948 D PFAM: Sporulation domain protein; KEGG: pen:PSEEN1693 hypothetical protein; sporulation domain-containing protein 1721283..1721948 Pseudomonas putida W619 6110500 YP_001748434.1 CDS PputW619_1560 NC_010501.1 1722066 1722623 D PFAM: Colicin V production protein; KEGG: pen:PSEEN1694 bacteriocin production protein CvpA; colicin V production protein 1722066..1722623 Pseudomonas putida W619 6110501 YP_001748435.1 CDS PputW619_1561 NC_010501.1 1722666 1724171 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1722666..1724171 Pseudomonas putida W619 6110502 YP_001748436.1 CDS PputW619_1562 NC_010501.1 1724188 1725399 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1724188..1725399 Pseudomonas putida W619 6110503 YP_001748437.1 CDS PputW619_1563 NC_010501.1 1725396 1726169 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1697 oxidoreductase, short chain dehydrogenase/reductase family; oxidoreductase 1725396..1726169 Pseudomonas putida W619 6110504 YP_001748438.1 CDS PputW619_1564 NC_010501.1 1727171 1728085 D KEGG: pen:PSEEN1700 hypothetical protein; hypothetical protein 1727171..1728085 Pseudomonas putida W619 6110509 YP_001748439.1 CDS PputW619_1565 NC_010501.1 1728306 1729391 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1701 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1728306..1729391) Pseudomonas putida W619 6110510 YP_001748440.1 CDS PputW619_1566 NC_010501.1 1729396 1730514 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1702 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1729396..1730514) Pseudomonas putida W619 6110511 YP_001748441.1 CDS PputW619_1567 NC_010501.1 1730828 1732282 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: pap:PSPA7_3433 cation transport protein; TrkH family potassium uptake protein complement(1730828..1732282) Pseudomonas putida W619 6110512 YP_001748442.1 CDS PputW619_1568 NC_010501.1 1732530 1734566 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN1703 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase 1732530..1734566 Pseudomonas putida W619 6110513 YP_001748443.1 CDS PputW619_1569 NC_010501.1 1734638 1735537 D KEGG: pen:PSEEN1704 1-aminocyclopropane-1-carboxylate deaminase; 1-aminocyclopropane-1-carboxylate deaminase 1734638..1735537 Pseudomonas putida W619 6110514 YP_001748444.1 CDS PputW619_1570 NC_010501.1 1735528 1736073 R PFAM: cytochrome B561; KEGG: pen:PSEEN1705 cytochrome b(561); cytochrome B561 complement(1735528..1736073) Pseudomonas putida W619 6110515 YP_001748445.1 CDS PputW619_1571 NC_010501.1 1736244 1737182 R PFAM: Domain of unknown function DUF1853; KEGG: pen:PSEEN1707 hypothetical protein; hypothetical protein complement(1736244..1737182) Pseudomonas putida W619 6110516 YP_001748446.1 CDS ppnK NC_010501.1 1737271 1738161 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1737271..1738161 Pseudomonas putida W619 6110517 YP_001748447.1 CDS PputW619_1573 NC_010501.1 1738161 1739132 D PFAM: metallophosphoesterase; KEGG: pen:PSEEN1709 serine/threonine protein phosphatase; metallophosphoesterase 1738161..1739132 Pseudomonas putida W619 6110518 YP_001748448.1 CDS PputW619_1574 NC_010501.1 1739129 1740007 D PFAM: Rhomboid family protein; KEGG: pen:PSEEN1710 hypothetical protein; rhomboid family protein 1739129..1740007 Pseudomonas putida W619 6110519 YP_001748449.1 CDS PputW619_1575 NC_010501.1 1740021 1740281 D PFAM: protein of unknown function DUF1315; KEGG: pen:PSEEN1711 hypothetical protein; hypothetical protein 1740021..1740281 Pseudomonas putida W619 6110520 YP_001748450.1 CDS PputW619_1576 NC_010501.1 1740311 1741108 D KEGG: pen:PSEEN1712 hypothetical protein; hypothetical protein 1740311..1741108 Pseudomonas putida W619 6110521 YP_001748451.1 CDS pepN NC_010501.1 1741122 1743779 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pen:PSEEN1713 aminopeptidase N; aminopeptidase N 1741122..1743779 Pseudomonas putida W619 6110522 YP_001748452.1 CDS PputW619_1578 NC_010501.1 1744044 1745069 D KEGG: pen:PSEEN1714 hypothetical protein; hypothetical protein 1744044..1745069 Pseudomonas putida W619 6110523 YP_001748453.1 CDS PputW619_1579 NC_010501.1 1745066 1747465 D KEGG: pen:PSEEN1715 hypothetical protein; hypothetical protein 1745066..1747465 Pseudomonas putida W619 6110524 YP_001748454.1 CDS PputW619_1580 NC_010501.1 1747623 1747913 D KEGG: pen:PSEEN1716 hypothetical protein; hypothetical protein 1747623..1747913 Pseudomonas putida W619 6110525 YP_001748455.1 CDS PputW619_1581 NC_010501.1 1747879 1749009 D KEGG: pen:PSEEN1717 hypothetical protein; 6-phosphogluconolactonase 1747879..1749009 Pseudomonas putida W619 6110526 YP_001748456.1 CDS PputW619_1582 NC_010501.1 1749133 1749312 D KEGG: pen:PSEEN1719 hypothetical protein; hypothetical protein 1749133..1749312 Pseudomonas putida W619 6110527 YP_001748457.1 CDS PputW619_1583 NC_010501.1 1749346 1749939 R PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: pen:PSEEN1720 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(1749346..1749939) Pseudomonas putida W619 6110528 YP_001748458.1 CDS PputW619_1584 NC_010501.1 1749936 1753580 R PFAM: SMC domain protein; KEGG: pen:PSEEN1721 exonuclease SbcC; SMC domain-containing protein complement(1749936..1753580) Pseudomonas putida W619 6110529 YP_001748459.1 CDS PputW619_1585 NC_010501.1 1753577 1754815 R TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: pen:PSEEN1722 exonuclease SbcD; nuclease SbcCD subunit D complement(1753577..1754815) Pseudomonas putida W619 6110530 YP_001748460.1 CDS PputW619_1586 NC_010501.1 1755127 1755558 D KEGG: pen:PSEEN1724 hypothetical protein; hypothetical protein 1755127..1755558 Pseudomonas putida W619 6110531 YP_001748461.1 CDS PputW619_1587 NC_010501.1 1755644 1757269 R KEGG: pen:PSEEN1725 hypothetical protein; hypothetical protein complement(1755644..1757269) Pseudomonas putida W619 6110532 YP_001748462.1 CDS PputW619_1588 NC_010501.1 1757266 1758984 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN1726 hypothetical protein; hypothetical protein complement(1757266..1758984) Pseudomonas putida W619 6110533 YP_001748463.1 CDS PputW619_1589 NC_010501.1 1758981 1760057 R PFAM: von Willebrand factor type A; KEGG: pen:PSEEN1727 hypothetical protein; von Willebrand factor type A complement(1758981..1760057) Pseudomonas putida W619 6110534 YP_001748464.1 CDS PputW619_1590 NC_010501.1 1760050 1760544 R KEGG: pen:PSEEN1728 hypothetical protein; hypothetical protein complement(1760050..1760544) Pseudomonas putida W619 6110535 YP_001748465.1 CDS PputW619_1591 NC_010501.1 1760558 1761502 R PFAM: protein of unknown function DUF58; KEGG: pen:PSEEN1729 hypothetical protein; hypothetical protein complement(1760558..1761502) Pseudomonas putida W619 6110536 YP_001748466.1 CDS PputW619_1592 NC_010501.1 1761507 1762466 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pen:PSEEN1730 ATPase, MoxR-like protein; ATPase complement(1761507..1762466) Pseudomonas putida W619 6110537 YP_001748467.1 CDS PputW619_1593 NC_010501.1 1762686 1763993 D KEGG: pap:PSPA7_3887 rhs element Vgr protein; rhs element Vgr protein 1762686..1763993 Pseudomonas putida W619 6110538 YP_001748468.1 CDS PputW619_1594 NC_010501.1 1764042 1765370 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN1735 MFS tranporter; major facilitator transporter complement(1764042..1765370) Pseudomonas putida W619 6110539 YP_001748469.1 CDS PputW619_1595 NC_010501.1 1765415 1766608 R catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase complement(1765415..1766608) Pseudomonas putida W619 6110540 YP_001748470.1 CDS PputW619_1596 NC_010501.1 1766714 1767424 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1737 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1766714..1767424) Pseudomonas putida W619 6110541 YP_001748471.1 CDS PputW619_1597 NC_010501.1 1767592 1767945 R KEGG: pen:PSEEN1739 hypothetical protein; hypothetical protein complement(1767592..1767945) Pseudomonas putida W619 6110542 YP_001748472.1 CDS PputW619_1598 NC_010501.1 1768195 1773060 D PFAM: NAD-glutamate dehydrogenase; KEGG: pen:PSEEN1740 NAD-specific glutamate dehydrogenase; arginine inducible; NAD-glutamate dehydrogenase 1768195..1773060 Pseudomonas putida W619 6110543 YP_001748473.1 CDS PputW619_1599 NC_010501.1 1773275 1774093 R PFAM: protein of unknown function DUF299; KEGG: pen:PSEEN1741 hypothetical protein; hypothetical protein complement(1773275..1774093) Pseudomonas putida W619 6110544 YP_001748474.1 CDS PputW619_1600 NC_010501.1 1774269 1776644 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1774269..1776644 Pseudomonas putida W619 6110545 YP_001748475.1 CDS PputW619_1601 NC_010501.1 1776710 1777738 D KEGG: pen:PSEEN1743 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase 1776710..1777738 Pseudomonas putida W619 6110546 YP_001748476.1 CDS PputW619_1602 NC_010501.1 1777878 1778369 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1777878..1778369 Pseudomonas putida W619 6110547 YP_001748477.1 CDS PputW619_1603 NC_010501.1 1778397 1779392 D PFAM: Mg2 transporter protein CorA family protein; KEGG: pen:PSEEN1745 metal ion transporter CmaX protein; Mg2 transporter protein CorA family protein 1778397..1779392 Pseudomonas putida W619 6110548 YP_001748478.1 CDS PputW619_1604 NC_010501.1 1779505 1779768 D KEGG: pen:PSEEN1747 hypothetical protein; hypothetical protein 1779505..1779768 Pseudomonas putida W619 6110549 YP_001748479.1 CDS PputW619_1605 NC_010501.1 1779771 1780595 D PFAM: Conserved TM helix repeat-containing protein; KEGG: pen:PSEEN1748 hypothetical protein; TM helix repeat-containing protein 1779771..1780595 Pseudomonas putida W619 6110550 YP_001748480.1 CDS PputW619_1606 NC_010501.1 1780709 1781275 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 1780709..1781275 Pseudomonas putida W619 6110551 YP_001748481.1 CDS PputW619_1607 NC_010501.1 1781386 1782423 D PFAM: OmpA/MotB domain protein; OmpF family protein; KEGG: pen:PSEEN1750 outer membrane protein OprF; OmpF family protein 1781386..1782423 Pseudomonas putida W619 6110552 YP_001748482.1 CDS PputW619_1608 NC_010501.1 1782522 1783262 R catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase complement(1782522..1783262) Pseudomonas putida W619 6110553 YP_001748483.1 CDS PputW619_1609 NC_010501.1 1783290 1784957 R SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: pen:PSEEN1751 bifunctional serine/threonine-protein kinase and phosphatase; protein serine/threonine phosphatase complement(1783290..1784957) Pseudomonas putida W619 6110554 YP_001748484.1 CDS PputW619_1610 NC_010501.1 1784967 1786178 R TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN1752 nitrate transporter; nitrite transporter complement(1784967..1786178) Pseudomonas putida W619 6110555 YP_001748485.1 CDS PputW619_1611 NC_010501.1 1786344 1786919 R PFAM: response regulator receiver; ANTAR domain protein; KEGG: pen:PSEEN1753 response regulator NasT; response regulator receiver/ANTAR domain-containing protein complement(1786344..1786919) Pseudomonas putida W619 6110556 YP_001748486.1 CDS PputW619_1612 NC_010501.1 1786931 1788133 R KEGG: pen:PSEEN1754 nitrate-binding protein NasS; nitrate-binding protein NasS complement(1786931..1788133) Pseudomonas putida W619 6110557 YP_001748487.1 CDS PputW619_1613 NC_010501.1 1788261 1789286 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1788261..1789286 Pseudomonas putida W619 6110558 YP_001748488.1 CDS PputW619_1614 NC_010501.1 1789383 1789598 R PFAM: ribosome modulation factor; KEGG: pen:PSEEN1756 ribosome modulation factor; ribosome modulation factor complement(1789383..1789598) Pseudomonas putida W619 6110559 YP_001748489.1 CDS rlmL NC_010501.1 1790161 1792353 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1790161..1792353 Pseudomonas putida W619 6110560 YP_001748490.1 CDS PputW619_1616 NC_010501.1 1792448 1794838 D KEGG: pen:PSEEN1758 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1792448..1794838 Pseudomonas putida W619 6110561 YP_001748491.1 CDS PputW619_1617 NC_010501.1 1794902 1796365 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pen:PSEEN3770 D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1794902..1796365) Pseudomonas putida W619 6110562 YP_001748492.1 CDS PputW619_1618 NC_010501.1 1796553 1796897 D PFAM: protein of unknown function DUF469; KEGG: pen:PSEEN3769 hypothetical protein; hypothetical protein 1796553..1796897 Pseudomonas putida W619 6110563 YP_001748493.1 CDS PputW619_1619 NC_010501.1 1796934 1800539 R KEGG: pen:PSEEN3768 two-component sensor/response regulator protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: extracellular solute-binding protein family 3; PAS/PAC sensor hybrid histidine kinase complement(1796934..1800539) Pseudomonas putida W619 6110564 YP_001748494.1 CDS PputW619_1620 NC_010501.1 1800548 1801168 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3767 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(1800548..1801168) Pseudomonas putida W619 6110565 YP_001748495.1 CDS PputW619_1621 NC_010501.1 1801447 1802778 R dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1801447..1802778) Pseudomonas putida W619 6110566 YP_001748496.1 CDS PputW619_1622 NC_010501.1 1802942 1803271 R KEGG: pen:PSEEN3765 hypothetical protein; hypothetical protein complement(1802942..1803271) Pseudomonas putida W619 6110567 YP_001748497.1 CDS PputW619_1623 NC_010501.1 1803268 1803642 R KEGG: pen:PSEEN3764 hypothetical protein; hypothetical protein complement(1803268..1803642) Pseudomonas putida W619 6110568 YP_001748498.1 CDS PputW619_1624 NC_010501.1 1803652 1803966 R PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3763 hypothetical protein; hypothetical protein complement(1803652..1803966) Pseudomonas putida W619 6110569 YP_001748499.1 CDS PputW619_1625 NC_010501.1 1804279 1805487 D PFAM: Rh family protein/ammonium transporter; KEGG: pen:PSEEN3762 ammonium transporter; Rh family protein/ammonium transporter 1804279..1805487 Pseudomonas putida W619 6110570 YP_001748500.1 CDS PputW619_1626 NC_010501.1 1805563 1805802 D PFAM: glutaredoxin 2; KEGG: pen:PSEEN3761 hypothetical protein; glutaredoxin 1805563..1805802 Pseudomonas putida W619 6110571 YP_001748501.1 CDS PputW619_1627 NC_010501.1 1805907 1806338 D PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein; peptidase M15A 1805907..1806338 Pseudomonas putida W619 6110572 YP_001748502.1 CDS PputW619_1628 NC_010501.1 1806410 1806718 D KEGG: pen:PSEEN3760 hypothetical protein; hypothetical protein 1806410..1806718 Pseudomonas putida W619 6110573 YP_001748503.1 CDS PputW619_1629 NC_010501.1 1806770 1807654 D PFAM: pseudouridine synthase; KEGG: pen:PSEEN3759 pseudouridylate synthase; pseudouridine synthase 1806770..1807654 Pseudomonas putida W619 6110574 YP_001748504.1 CDS PputW619_1630 NC_010501.1 1807695 1809260 R KEGG: pen:PSEEN3758 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(1807695..1809260) Pseudomonas putida W619 6110575 YP_001748505.1 CDS acnA NC_010501.1 1809521 1812262 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1809521..1812262) Pseudomonas putida W619 6110576 YP_001748506.1 CDS PputW619_1632 NC_010501.1 1812486 1813553 D KEGG: pen:PSEEN3755 hypothetical protein; putative RNA 2'-O-ribose methyltransferase 1812486..1813553 Pseudomonas putida W619 6110577 YP_001748507.1 CDS PputW619_1633 NC_010501.1 1814413 1814655 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1814413..1814655 Pseudomonas putida W619 6110578 YP_001748508.1 CDS PputW619_1634 NC_010501.1 1814716 1815858 D Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1814716..1815858 Pseudomonas putida W619 6110579 YP_001748509.1 CDS PputW619_1635 NC_010501.1 1815928 1816101 R KEGG: pen:PSEEN3752 hypothetical protein; hypothetical protein complement(1815928..1816101) Pseudomonas putida W619 6110580 YP_001748510.1 CDS PputW619_1636 NC_010501.1 1816362 1818068 D KEGG: pen:PSEEN3751 ABC efflux transporter, permease/ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1816362..1818068 Pseudomonas putida W619 6110581 YP_001748511.1 CDS PputW619_1637 NC_010501.1 1818259 1819875 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN3750 methyl-accepting chemotaxis histidine kinase; methyl-accepting chemotaxis sensory transducer 1818259..1819875 Pseudomonas putida W619 6110582 YP_001748512.1 CDS PputW619_1638 NC_010501.1 1820088 1820309 R PFAM: protein of unknown function DUF903; KEGG: pen:PSEEN3747 hypothetical protein; hypothetical protein complement(1820088..1820309) Pseudomonas putida W619 6110584 YP_001748513.1 CDS PputW619_1639 NC_010501.1 1820487 1821026 D TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN3745 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B 1820487..1821026 Pseudomonas putida W619 6110585 YP_001748514.1 CDS PputW619_1640 NC_010501.1 1821019 1822236 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: pen:PSEEN3744 molybdopterin biosynthesis protein, molybdenum incorporation step; molybdenum cofactor synthesis domain-containing protein 1821019..1822236 Pseudomonas putida W619 6110586 YP_001748515.1 CDS PputW619_1641 NC_010501.1 1822225 1823472 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN3743 glycosyl transferase; glycosyl transferase group 1 protein complement(1822225..1823472) Pseudomonas putida W619 6110587 YP_001748516.1 CDS PputW619_1642 NC_010501.1 1823931 1824812 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1823931..1824812 Pseudomonas putida W619 6110588 YP_001748517.1 CDS PputW619_1643 NC_010501.1 1824796 1825455 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3740 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(1824796..1825455) Pseudomonas putida W619 6110589 YP_001748518.1 CDS PputW619_1644 NC_010501.1 1825452 1826342 R PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pen:PSEEN3739 sensor histidine kinase; histidine kinase complement(1825452..1826342) Pseudomonas putida W619 6110590 YP_001748519.1 CDS PputW619_1645 NC_010501.1 1826720 1827241 R KEGG: pen:PSEEN3737 hypothetical protein; putative CheA signal transduction histidine kinase complement(1826720..1827241) Pseudomonas putida W619 6110591 YP_001748520.1 CDS PputW619_1646 NC_010501.1 1827588 1828523 D PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3735 chemotaxis protein CheV; response regulator receiver modulated CheW protein 1827588..1828523 Pseudomonas putida W619 6110592 YP_001748521.1 CDS PputW619_1647 NC_010501.1 1828579 1829382 D PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pen:PSEEN3734 hypothetical protein; MOSC domain-containing protein 1828579..1829382 Pseudomonas putida W619 6110593 YP_001748522.1 CDS PputW619_1648 NC_010501.1 1829436 1831364 R PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN3733 lytic murein transglycosylase, soluble; lytic transglycosylase complement(1829436..1831364) Pseudomonas putida W619 6110594 YP_001748523.1 CDS PputW619_1649 NC_010501.1 1831586 1833514 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3732 ABC transporter, ATP-binding protein; ABC transporter-like protein 1831586..1833514 Pseudomonas putida W619 6110595 YP_001748524.1 CDS PputW619_1650 NC_010501.1 1833603 1834043 R PFAM: UspA domain protein; KEGG: pen:PSEEN3731 universal stress protein family; UspA domain-containing protein complement(1833603..1834043) Pseudomonas putida W619 6110596 YP_001748525.1 CDS PputW619_1651 NC_010501.1 1834152 1834589 D KEGG: pen:PSEEN3730 hypothetical protein; hypothetical protein 1834152..1834589 Pseudomonas putida W619 6110597 YP_001748526.1 CDS fadB NC_010501.1 1835075 1837222 D includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1835075..1837222 Pseudomonas putida W619 6110598 YP_001748527.1 CDS fadA NC_010501.1 1837263 1838438 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1837263..1838438 Pseudomonas putida W619 6110599 YP_001748528.1 CDS PputW619_1654 NC_010501.1 1838519 1838770 D PFAM: protein of unknown function DUF1653; KEGG: pen:PSEEN3726 hypothetical protein; hypothetical protein 1838519..1838770 Pseudomonas putida W619 6110600 YP_001748529.1 CDS PputW619_1655 NC_010501.1 1838871 1841480 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1838871..1841480 Pseudomonas putida W619 6110601 YP_001748530.1 CDS PputW619_1656 NC_010501.1 1841597 1842112 D KEGG: pen:PSEEN3724 hypothetical protein; hypothetical protein 1841597..1842112 Pseudomonas putida W619 6110602 YP_001748531.1 CDS PputW619_1657 NC_010501.1 1842163 1842396 D KEGG: pen:PSEEN3723 hypothetical protein; hypothetical protein 1842163..1842396 Pseudomonas putida W619 6110603 YP_001748532.1 CDS PputW619_1658 NC_010501.1 1842435 1842911 R KEGG: pen:PSEEN3722 cell division inhibitor-related protein, SulA-like; cell division inhibitor-like protein, SulA-like protein complement(1842435..1842911) Pseudomonas putida W619 6110604 YP_001748533.1 CDS PputW619_1659 NC_010501.1 1842925 1843533 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1842925..1843533) Pseudomonas putida W619 6110605 YP_001748534.1 CDS PputW619_1660 NC_010501.1 1843755 1844462 D PFAM: regulatory protein TetR; KEGG: pfl:PFL_1950 transcriptional regulator, TetR family; TetR family transcriptional regulator 1843755..1844462 Pseudomonas putida W619 6110606 YP_001748535.1 CDS PputW619_1661 NC_010501.1 1844503 1845024 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN3719 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1844503..1845024 Pseudomonas putida W619 6110607 YP_001748536.1 CDS PputW619_1662 NC_010501.1 1845038 1846048 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1845038..1846048 Pseudomonas putida W619 6110608 YP_001748537.1 CDS PputW619_1663 NC_010501.1 1846135 1849461 R KEGG: pen:PSEEN3717 helicase, SNF2/RAD54 family; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase complement(1846135..1849461) Pseudomonas putida W619 6110609 YP_001748538.1 CDS PputW619_1664 NC_010501.1 1849463 1850035 R KEGG: pen:PSEEN3716 hypothetical protein; hypothetical protein complement(1849463..1850035) Pseudomonas putida W619 6110610 YP_001748539.1 CDS PputW619_1665 NC_010501.1 1850045 1853494 R KEGG: pen:PSEEN3715 transcription-repair coupling protein; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1850045..1853494) Pseudomonas putida W619 6110611 YP_001748540.1 CDS PputW619_1666 NC_010501.1 1853663 1855126 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1853663..1855126 Pseudomonas putida W619 6110612 YP_001748541.1 CDS PputW619_1667 NC_010501.1 1855350 1856348 D PFAM: ApbE family lipoprotein; KEGG: pen:PSEEN3713 thiamine biosynthesis lipoprotein ApbE-like; ApbE family lipoprotein 1855350..1856348 Pseudomonas putida W619 6110613 YP_001748542.1 CDS PputW619_1668 NC_010501.1 1856553 1857947 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1856553..1857947 Pseudomonas putida W619 6110614 YP_001748543.1 CDS PputW619_1669 NC_010501.1 1857996 1858712 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pen:PSEEN3710 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1857996..1858712) Pseudomonas putida W619 6110615 YP_001748544.1 CDS PputW619_1670 NC_010501.1 1858744 1859328 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3709 hypothetical protein; type IV pilus assembly PilZ complement(1858744..1859328) Pseudomonas putida W619 6110616 YP_001748545.1 CDS PputW619_1671 NC_010501.1 1859422 1860672 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3708 lipoprotein releasing system transmembrane protein LolC; LolC/E family lipoprotein releasing system, transmembrane protein 1859422..1860672 Pseudomonas putida W619 6110617 YP_001748546.1 CDS PputW619_1672 NC_010501.1 1860665 1861363 D KEGG: pen:PSEEN3707 lipoprotein releasing system, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1860665..1861363 Pseudomonas putida W619 6110618 YP_001748547.1 CDS PputW619_1673 NC_010501.1 1861420 1862661 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN3706 lipoprotein releasing system transmembrane protein LolE; LolC/E family lipoprotein releasing system, transmembrane protein 1861420..1862661 Pseudomonas putida W619 6110619 YP_001748548.1 CDS PputW619_1674 NC_010501.1 1862776 1864113 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3705 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase complement(1862776..1864113) Pseudomonas putida W619 6110620 YP_001748549.1 CDS PputW619_1675 NC_010501.1 1864113 1864793 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3704 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator complement(1864113..1864793) Pseudomonas putida W619 6110621 YP_001748550.1 CDS PputW619_1676 NC_010501.1 1864947 1865450 D PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN3703 copper-binding protein; blue copper domain-containing protein 1864947..1865450 Pseudomonas putida W619 6110622 YP_001748551.1 CDS queF NC_010501.1 1865519 1866349 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1865519..1866349 Pseudomonas putida W619 6110623 YP_001748552.1 CDS PputW619_1678 NC_010501.1 1866475 1866738 R KEGG: pen:PSEEN3701 hypothetical protein; hypothetical protein complement(1866475..1866738) Pseudomonas putida W619 6110624 YP_001748553.1 CDS PputW619_1679 NC_010501.1 1866862 1867425 R KEGG: pen:PSEEN3700 hypothetical protein; hypothetical protein complement(1866862..1867425) Pseudomonas putida W619 6110625 YP_001748554.1 CDS PputW619_1680 NC_010501.1 1867614 1868321 D PFAM: VacJ family lipoprotein; KEGG: pen:PSEEN3699 VacJ lipoprotein; VacJ family lipoprotein 1867614..1868321 Pseudomonas putida W619 6110626 YP_001748555.1 CDS PputW619_1681 NC_010501.1 1868373 1868672 R PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3698 hypothetical protein; type IV pilus assembly PilZ complement(1868373..1868672) Pseudomonas putida W619 6110627 YP_001748556.1 CDS PputW619_1682 NC_010501.1 1868888 1870126 D PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3696 response regulator; response regulator receiver modulated serine phosphatase 1868888..1870126 Pseudomonas putida W619 6110628 YP_001748557.1 CDS PputW619_1683 NC_010501.1 1870123 1870605 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3695 anti-anti-sigma factor; anti-sigma-factor antagonist 1870123..1870605 Pseudomonas putida W619 6110629 YP_001748558.1 CDS PputW619_1684 NC_010501.1 1870658 1872517 R KEGG: pen:PSEEN3694 hypothetical protein; hypothetical protein complement(1870658..1872517) Pseudomonas putida W619 6110630 YP_001748559.1 CDS PputW619_1685 NC_010501.1 1872661 1873587 R KEGG: pen:PSEEN3692 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B complement(1872661..1873587) Pseudomonas putida W619 6110631 YP_001748560.1 CDS PputW619_1686 NC_010501.1 1873820 1874785 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN3691 tRNA-dihydrouridine synthase A; tRNA-dihydrouridine synthase A complement(1873820..1874785) Pseudomonas putida W619 6110632 YP_001748561.1 CDS PputW619_1687 NC_010501.1 1875587 1876513 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pst:PSPTO_4277 esterase/lipase/thioesterase family protein; alpha/beta hydrolase domain-containing protein complement(1875587..1876513) Pseudomonas putida W619 6110633 YP_001748562.1 CDS PputW619_1688 NC_010501.1 1876635 1877573 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_4276 transcriptional regulator, LysR family; LysR family transcriptional regulator 1876635..1877573 Pseudomonas putida W619 6110634 YP_001748563.1 CDS fabG NC_010501.1 1878228 1878998 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1878228..1878998 Pseudomonas putida W619 6110635 YP_001748564.1 CDS gldA NC_010501.1 1879062 1880165 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1879062..1880165 Pseudomonas putida W619 6110636 YP_001748565.1 CDS PputW619_1691 NC_010501.1 1880212 1881174 D KEGG: rme:Rmet_4455 hypothetical protein; hypothetical protein 1880212..1881174 Pseudomonas putida W619 6110637 YP_001748566.1 CDS PputW619_1692 NC_010501.1 1881334 1882365 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0764 periplasmic binding protein/LacI transcriptional regulator; LacI family transcriptional regulator 1881334..1882365 Pseudomonas putida W619 6110638 YP_001748567.1 CDS PputW619_1693 NC_010501.1 1882362 1883309 R KEGG: bpt:Bpet1181 hypothetical protein; hypothetical protein complement(1882362..1883309) Pseudomonas putida W619 6110639 YP_001748568.1 CDS PputW619_1694 NC_010501.1 1883306 1884310 R PFAM: luciferase family protein; KEGG: bpt:Bpet1180 putative monooxygenase; luciferase family protein complement(1883306..1884310) Pseudomonas putida W619 6110640 YP_001748569.1 CDS PputW619_1695 NC_010501.1 1884726 1885199 D KEGG: smd:Smed_2449 cupin 2 conserved barrel domain protein; cupin 1884726..1885199 Pseudomonas putida W619 6110641 YP_001748570.1 CDS PputW619_1696 NC_010501.1 1885282 1886208 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rle:pRL120168 putative LysR family transcriptional regulator; LysR family transcriptional regulator 1885282..1886208 Pseudomonas putida W619 6110642 YP_001748571.1 CDS PputW619_1697 NC_010501.1 1886600 1887988 D PFAM: major facilitator superfamily MFS_1; KEGG: mta:Moth_1257 major facilitator superfamily MFS_1; major facilitator transporter 1886600..1887988 Pseudomonas putida W619 6110643 YP_001748572.1 CDS PputW619_1698 NC_010501.1 1888079 1889272 D PFAM: alpha/beta hydrolase fold; KEGG: msm:MSMEG_2534 putative carboxylesterase protein; alpha/beta hydrolase fold family protein 1888079..1889272 Pseudomonas putida W619 6110644 YP_001748573.1 CDS PputW619_1699 NC_010501.1 1889595 1890557 D Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 1889595..1890557 Pseudomonas putida W619 6110645 YP_001748574.1 CDS PputW619_1700 NC_010501.1 1890608 1891534 D PFAM: protein of unknown function DUF849; KEGG: vei:Veis_4704 protein of unknown function DUF849; hypothetical protein 1890608..1891534 Pseudomonas putida W619 6110646 YP_001748575.1 CDS PputW619_1701 NC_010501.1 1891645 1893015 D PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_4257 major facilitator superfamily MFS_1; major facilitator transporter 1891645..1893015 Pseudomonas putida W619 6110647 YP_001748576.1 CDS PputW619_1702 NC_010501.1 1893012 1894538 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: bxe:Bxe_A4448 altronate dehydratase; altronate dehydratase 1893012..1894538 Pseudomonas putida W619 6110648 YP_001748577.1 CDS PputW619_1703 NC_010501.1 1894602 1895321 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dac:Daci_4254 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1894602..1895321) Pseudomonas putida W619 6110649 YP_001748578.1 CDS PputW619_1704 NC_010501.1 1895489 1896277 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2184 short chain dehydrogenase; short chain dehydrogenase complement(1895489..1896277) Pseudomonas putida W619 6110650 YP_001748579.1 CDS PputW619_1706 NC_010501.1 1897447 1897929 D catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 1897447..1897929 Pseudomonas putida W619 6110652 YP_001748580.1 CDS PputW619_1707 NC_010501.1 1897923 1899482 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pen:PSEEN1827 formate dehydrogenase, beta subunit; NADH dehydrogenase 1897923..1899482 Pseudomonas putida W619 6110653 YP_001748581.1 CDS PputW619_1708 NC_010501.1 1899479 1902358 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pen:PSEEN1828 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 1899479..1902358 Pseudomonas putida W619 6110654 YP_001748582.1 CDS PputW619_1709 NC_010501.1 1902355 1902558 D KEGG: pen:PSEEN1829 formate dehydrogenase, delta subunit; formate dehydrogenase subunit delta 1902355..1902558 Pseudomonas putida W619 6110655 YP_001748583.1 CDS PputW619_1710 NC_010501.1 1902752 1904569 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1831 ABC efflux transporter, permease/ATP-binding protein; ABC transporter 1902752..1904569 Pseudomonas putida W619 6110656 YP_001748584.1 CDS PputW619_1711 NC_010501.1 1904586 1905275 R PFAM: protein of unknown function DUF159; KEGG: psb:Psyr_2763 protein of unknown function DUF159; hypothetical protein complement(1904586..1905275) Pseudomonas putida W619 6110657 YP_001748585.1 CDS PputW619_1712 NC_010501.1 1905591 1906457 R PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B complement(1905591..1906457) Pseudomonas putida W619 6110658 YP_001748586.1 CDS PputW619_1713 NC_010501.1 1906578 1908320 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein complement(1906578..1908320) Pseudomonas putida W619 6110659 YP_001748587.1 CDS PputW619_1714 NC_010501.1 1908618 1909613 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: psb:Psyr_1506 cation efflux protein; cation diffusion facilitator family transporter 1908618..1909613 Pseudomonas putida W619 6110660 YP_001748588.1 CDS PputW619_1715 NC_010501.1 1909537 1910820 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: pfl:PFL_2185 arsenite efflux transporter; arsenical pump membrane protein complement(1909537..1910820) Pseudomonas putida W619 6110661 YP_001748589.1 CDS PputW619_1716 NC_010501.1 1911061 1913301 D Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 1911061..1913301 Pseudomonas putida W619 6110662 YP_001748590.1 CDS PputW619_1717 NC_010501.1 1913428 1913715 D KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 1913428..1913715 Pseudomonas putida W619 6110663 YP_001748591.1 CDS PputW619_1718 NC_010501.1 1913712 1915232 D PFAM: PepSY-associated TM helix domain protein; KEGG: pfo:Pfl_0927 aspartate kinase; PepSY-associated TM helix domain-containing protein 1913712..1915232 Pseudomonas putida W619 6110664 YP_001748592.1 CDS PputW619_1719 NC_010501.1 1915229 1915561 D KEGG: bbr:BB3603 putative iron uptake protein; putative iron uptake protein 1915229..1915561 Pseudomonas putida W619 6110665 YP_001748593.1 CDS PputW619_1720 NC_010501.1 1915591 1916190 R PFAM: Haem oxygenase; KEGG: pen:PSEEN1837 heme oxygenase BphO; heme oxygenase complement(1915591..1916190) Pseudomonas putida W619 6110666 YP_001748594.1 CDS PputW619_1721 NC_010501.1 1916332 1916871 D PFAM: Phosphoglycerate mutase; KEGG: pfl:PFL_2248 phosphoglycerate mutase family protein; phosphoglycerate mutase 1916332..1916871 Pseudomonas putida W619 6110667 YP_001748595.1 CDS PputW619_1722 NC_010501.1 1916929 1917714 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein complement(1916929..1917714) Pseudomonas putida W619 6110668 YP_001748596.1 CDS PputW619_1723 NC_010501.1 1917876 1919756 R PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1841 methyl-accepting chemotaxis transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(1917876..1919756) Pseudomonas putida W619 6110669 YP_001748597.1 CDS PputW619_1724 NC_010501.1 1919897 1920775 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1842 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1919897..1920775) Pseudomonas putida W619 6110670 YP_001748598.1 CDS PputW619_1725 NC_010501.1 1920877 1921305 D PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN1843 hypothetical protein; transmembrane pair domain-containing protein 1920877..1921305 Pseudomonas putida W619 6110671 YP_001748599.1 CDS PputW619_1726 NC_010501.1 1921320 1922381 R KEGG: pen:PSEEN1844 hypothetical protein; hypothetical protein complement(1921320..1922381) Pseudomonas putida W619 6110672 YP_001748600.1 CDS PputW619_1727 NC_010501.1 1922457 1923137 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1847 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1922457..1923137) Pseudomonas putida W619 6110673 YP_001748601.1 CDS PputW619_1728 NC_010501.1 1923154 1923858 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1848 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1923154..1923858) Pseudomonas putida W619 6110674 YP_001748602.1 CDS PputW619_1729 NC_010501.1 1923903 1925213 R involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA complement(1923903..1925213) Pseudomonas putida W619 6110675 YP_001748603.1 CDS PputW619_1730 NC_010501.1 1925501 1925986 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1854 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1925501..1925986) Pseudomonas putida W619 6110676 YP_001748604.1 CDS PputW619_1731 NC_010501.1 1926091 1927155 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1926091..1927155) Pseudomonas putida W619 6110677 YP_001748605.1 CDS PputW619_1732 NC_010501.1 1927299 1929056 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: psp:PSPPH_1680 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator complement(1927299..1929056) Pseudomonas putida W619 6110678 YP_001748606.1 CDS PputW619_1733 NC_010501.1 1929280 1930374 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1681 ABC transporter, ATP-binding protein; ABC transporter-like protein 1929280..1930374 Pseudomonas putida W619 6110679 YP_001748607.1 CDS PputW619_1734 NC_010501.1 1930374 1931471 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psp:PSPPH_1682 ABC transporter, ATP-binding protein; ABC transporter-like protein 1930374..1931471 Pseudomonas putida W619 6110680 YP_001748608.1 CDS PputW619_1735 NC_010501.1 1931468 1932331 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3633 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1931468..1932331 Pseudomonas putida W619 6110681 YP_001748609.1 CDS PputW619_1736 NC_010501.1 1932335 1933135 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_1740 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1932335..1933135 Pseudomonas putida W619 6110682 YP_001748610.1 CDS PputW619_1737 NC_010501.1 1933148 1933420 D KEGG: pmy:Pmen_2046 small integral membrane protein-like protein; small integral membrane protein-like protein 1933148..1933420 Pseudomonas putida W619 6110683 YP_001748611.1 CDS PputW619_1738 NC_010501.1 1933459 1935198 D KEGG: pfo:Pfl_3630 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1933459..1935198 Pseudomonas putida W619 6110684 YP_001748612.1 CDS PputW619_1739 NC_010501.1 1935298 1936152 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1935298..1936152) Pseudomonas putida W619 6110685 YP_001748613.1 CDS PputW619_1740 NC_010501.1 1937097 1937396 D KEGG: pen:PSEEN1866 hypothetical protein; hypothetical protein 1937097..1937396 Pseudomonas putida W619 6110690 YP_001748614.1 CDS tig NC_010501.1 1937643 1938956 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1937643..1938956 Pseudomonas putida W619 6110691 YP_001748615.1 CDS clpP NC_010501.1 1939048 1939689 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1939048..1939689 Pseudomonas putida W619 6110692 YP_001748616.1 CDS clpX NC_010501.1 1939798 1941081 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1939798..1941081 Pseudomonas putida W619 6110693 YP_001748617.1 CDS PputW619_1744 NC_010501.1 1941238 1943634 D KEGG: pen:PSEEN1870 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1941238..1943634 Pseudomonas putida W619 6110694 YP_001748618.1 CDS PputW619_1745 NC_010501.1 1943787 1944059 D PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN1871 DNA-binding protein HU-beta; histone family protein DNA-binding protein 1943787..1944059 Pseudomonas putida W619 6110695 YP_001748619.1 CDS PputW619_1746 NC_010501.1 1944243 1946114 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN1872 peptidyl-prolyl cis-trans isomerase D; PpiC-type peptidyl-prolyl cis-trans isomerase 1944243..1946114 Pseudomonas putida W619 6110696 YP_001748620.1 CDS PputW619_1747 NC_010501.1 1946195 1947235 R PFAM: Patatin; KEGG: pen:PSEEN1873 patatin-like phospholipase; patatin complement(1946195..1947235) Pseudomonas putida W619 6110697 YP_001748621.1 CDS PputW619_1748 NC_010501.1 1947389 1947667 D KEGG: pen:PSEEN1874 lipoprotein; lipoprotein 1947389..1947667 Pseudomonas putida W619 6110698 YP_001748622.1 CDS PputW619_1749 NC_010501.1 1947682 1948461 D PFAM: CHAD domain containing protein; KEGG: pen:PSEEN1875 hypothetical protein; CHAD domain-containing protein 1947682..1948461 Pseudomonas putida W619 6110699 YP_001748623.1 CDS PputW619_1750 NC_010501.1 1948538 1949335 D KEGG: pen:PSEEN1876 acyl-CoA thioesterase II; acyl-CoA thioesterase II 1948538..1949335 Pseudomonas putida W619 6110700 YP_001748624.1 CDS PputW619_1751 NC_010501.1 1949339 1949707 R KEGG: pen:PSEEN1877 hypothetical protein; hypothetical protein complement(1949339..1949707) Pseudomonas putida W619 6110701 YP_001748625.1 CDS PputW619_1752 NC_010501.1 1949783 1951261 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1878 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(1949783..1951261) Pseudomonas putida W619 6110702 YP_001748626.1 CDS PputW619_1753 NC_010501.1 1951377 1952174 R PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN1879 deoxyribonuclease, TatD family; TatD-related deoxyribonuclease complement(1951377..1952174) Pseudomonas putida W619 6110703 YP_001748627.1 CDS PputW619_1754 NC_010501.1 1952333 1953739 D PFAM: Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1880 lytic transglycosylase; lytic transglycosylase 1952333..1953739 Pseudomonas putida W619 6110704 YP_001748628.1 CDS PputW619_1755 NC_010501.1 1953854 1954288 D PFAM: DoxX family protein; KEGG: pen:PSEEN1881 hypothetical protein; DoxX family protein 1953854..1954288 Pseudomonas putida W619 6110705 YP_001748629.1 CDS PputW619_1756 NC_010501.1 1954503 1954811 D KEGG: pen:PSEEN1882 hypothetical protein; hypothetical protein 1954503..1954811 Pseudomonas putida W619 6110706 YP_001748630.1 CDS greB NC_010501.1 1954823 1955296 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1954823..1955296 Pseudomonas putida W619 6110707 YP_001748631.1 CDS PputW619_1758 NC_010501.1 1955354 1957861 R PFAM: protein of unknown function DUF214; KEGG: pen:PSEEN1884 hypothetical protein; hypothetical protein complement(1955354..1957861) Pseudomonas putida W619 6110708 YP_001748632.1 CDS PputW619_1759 NC_010501.1 1957861 1958544 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1885 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1957861..1958544) Pseudomonas putida W619 6110709 YP_001748633.1 CDS PputW619_1760 NC_010501.1 1958555 1959160 D PFAM: lipolytic protein G-D-S-L family; KEGG: pen:PSEEN1886 arylesterase; arylesterase 1958555..1959160 Pseudomonas putida W619 6110710 YP_001748634.1 CDS PputW619_1761 NC_010501.1 1959219 1959500 D KEGG: pen:PSEEN1887 hypothetical protein; hypothetical protein 1959219..1959500 Pseudomonas putida W619 6110711 YP_001748635.1 CDS PputW619_1762 NC_010501.1 1959632 1960609 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pen:PSEEN1888 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1959632..1960609 Pseudomonas putida W619 6110712 YP_001748636.1 CDS PputW619_1763 NC_010501.1 1960750 1961001 R KEGG: pen:PSEEN1889 outer membrane lipoprotein OprI; outer membrane lipoprotein OprI complement(1960750..1961001) Pseudomonas putida W619 6110713 YP_001748637.1 CDS PputW619_1764 NC_010501.1 1961518 1961799 D KEGG: pen:PSEEN1890 hypothetical protein; hypothetical protein 1961518..1961799 Pseudomonas putida W619 6110714 YP_001748638.1 CDS PputW619_1765 NC_010501.1 1961863 1962939 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1961863..1962939) Pseudomonas putida W619 6110715 YP_001748639.1 CDS PputW619_1766 NC_010501.1 1963173 1964120 D catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1963173..1964120 Pseudomonas putida W619 6110716 YP_001748640.1 CDS PputW619_1767 NC_010501.1 1964225 1964722 D PFAM: UspA domain protein; KEGG: pen:PSEEN1894 hypothetical protein; UspA domain-containing protein 1964225..1964722 Pseudomonas putida W619 6110717 YP_001748641.1 CDS cysB NC_010501.1 1964852 1965826 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1964852..1965826 Pseudomonas putida W619 6110718 YP_001748642.1 CDS PputW619_1769 NC_010501.1 1965928 1966662 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(1965928..1966662) Pseudomonas putida W619 6110719 YP_001748643.1 CDS PputW619_1770 NC_010501.1 1966782 1968125 R KEGG: pen:PSEEN1897 para-aminodeoxychorismate synthase subunit I PabB; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; para-aminobenzoate synthase subunit I complement(1966782..1968125) Pseudomonas putida W619 6110720 YP_001748644.1 CDS PputW619_1771 NC_010501.1 1968297 1969280 R TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: pen:PSEEN1898 hypothetical protein; alpha-L-glutamate ligase-like protein complement(1968297..1969280) Pseudomonas putida W619 6110721 YP_001748645.1 CDS PputW619_1772 NC_010501.1 1969280 1970815 R KEGG: pen:PSEEN1899 hypothetical protein; hypothetical protein complement(1969280..1970815) Pseudomonas putida W619 6110722 YP_001748646.1 CDS PputW619_1773 NC_010501.1 1970821 1971357 R PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN1900 hypothetical protein; hypothetical protein complement(1970821..1971357) Pseudomonas putida W619 6110723 YP_001748647.1 CDS PputW619_1774 NC_010501.1 1971652 1972356 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1901 transcriptional regulator, GntR family; GntR family transcriptional regulator 1971652..1972356 Pseudomonas putida W619 6110724 YP_001748648.1 CDS prpB NC_010501.1 1972365 1973255 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1972365..1973255 Pseudomonas putida W619 6110725 YP_001748649.1 CDS PputW619_1776 NC_010501.1 1973410 1974537 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1973410..1974537 Pseudomonas putida W619 6110726 YP_001748650.1 CDS PputW619_1777 NC_010501.1 1974692 1977280 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1974692..1977280 Pseudomonas putida W619 6110727 YP_001748651.1 CDS PputW619_1778 NC_010501.1 1977420 1978610 D TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: pen:PSEEN1906 hypothetical protein; AcnD-accessory protein PrpF 1977420..1978610 Pseudomonas putida W619 6110728 YP_001748652.1 CDS prpD NC_010501.1 1978749 1980233 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 1978749..1980233 Pseudomonas putida W619 6110729 YP_001748653.1 CDS PputW619_1780 NC_010501.1 1980299 1982923 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(1980299..1982923) Pseudomonas putida W619 6110730 YP_001748654.1 CDS PputW619_1781 NC_010501.1 1983314 1983781 D PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN1909 hypothetical protein; hypothetical protein 1983314..1983781 Pseudomonas putida W619 6110731 YP_001748655.1 CDS PputW619_1782 NC_010501.1 1983849 1984610 D hypothetical protein 1983849..1984610 Pseudomonas putida W619 6110732 YP_001748656.1 CDS PputW619_1783 NC_010501.1 1984637 1984993 R TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pen:PSEEN1910 6-pyruvoyl tetrahydrobiopterin synthase SscR; queuosine biosynthesis protein QueD complement(1984637..1984993) Pseudomonas putida W619 6110733 YP_001748657.1 CDS PputW619_1784 NC_010501.1 1985045 1986124 R KEGG: pen:PSEEN1911 hypothetical protein; hypothetical protein complement(1985045..1986124) Pseudomonas putida W619 6110734 YP_001748658.1 CDS PputW619_1785 NC_010501.1 1986278 1986586 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1912 hypothetical protein; peptidase 1986278..1986586 Pseudomonas putida W619 6110735 YP_001748659.1 CDS PputW619_1786 NC_010501.1 1986586 1986900 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: pen:PSEEN1913 hypothetical protein; peptidase 1986586..1986900 Pseudomonas putida W619 6110736 YP_001748660.1 CDS PputW619_1787 NC_010501.1 1986901 1987569 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN1914 DNA-binding response regulator; two component transcriptional regulator 1986901..1987569 Pseudomonas putida W619 6110737 YP_001748661.1 CDS PputW619_1788 NC_010501.1 1987566 1988885 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN1915 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1987566..1988885 Pseudomonas putida W619 6110738 YP_001748662.1 CDS PputW619_1789 NC_010501.1 1989096 1990253 D PFAM: CBS domain containing protein; HPP family protein?; KEGG: pen:PSEEN1916 hypothetical protein; hypothetical protein 1989096..1990253 Pseudomonas putida W619 6110739 YP_001748663.1 CDS PputW619_1790 NC_010501.1 1990227 1991093 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1917 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1990227..1991093) Pseudomonas putida W619 6110740 YP_001748664.1 CDS PputW619_1791 NC_010501.1 1991274 1993163 D PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN1919 acetyl-CoA synthetase; AMP-dependent synthetase and ligase 1991274..1993163 Pseudomonas putida W619 6110741 YP_001748665.1 CDS PputW619_1792 NC_010501.1 1993199 1994284 R PFAM: AFG1-family ATPase; KEGG: pen:PSEEN1920 ATPase, AFG1 family; AFG1 family ATPase complement(1993199..1994284) Pseudomonas putida W619 6110742 YP_001748666.1 CDS PputW619_1793 NC_010501.1 1994390 1994632 R KEGG: pfo:Pfl_3131 hypothetical protein; hypothetical protein complement(1994390..1994632) Pseudomonas putida W619 6110743 YP_001748667.1 CDS PputW619_1794 NC_010501.1 1995105 1997492 R KEGG: pen:PSEEN3403 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(1995105..1997492) Pseudomonas putida W619 6110745 YP_001748668.1 CDS PputW619_1795 NC_010501.1 1997507 1997968 R PFAM: response regulator receiver; KEGG: pen:PSEEN3402 response regulator; response regulator receiver protein complement(1997507..1997968) Pseudomonas putida W619 6110746 YP_001748669.1 CDS PputW619_1796 NC_010501.1 1997984 2000254 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Phytochrome central region domain protein; PAS fold-2 domain protein; KEGG: pen:PSEEN3401 bacteriophytochrome 1; GAF sensor signal transduction histidine kinase complement(1997984..2000254) Pseudomonas putida W619 6110747 YP_001748670.1 CDS PputW619_1797 NC_010501.1 2000520 2001047 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3400 type 1 pili protein CsuB; spore coat U domain-containing protein 2000520..2001047 Pseudomonas putida W619 6110748 YP_001748671.1 CDS PputW619_1798 NC_010501.1 2001077 2001613 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3399 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2001077..2001613 Pseudomonas putida W619 6110749 YP_001748672.1 CDS PputW619_1799 NC_010501.1 2001633 2002166 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3398 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2001633..2002166 Pseudomonas putida W619 6110750 YP_001748673.1 CDS PputW619_1800 NC_010501.1 2002176 2002679 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3397 type 1 pili subunit CsuA/B protein; spore coat U domain-containing protein 2002176..2002679 Pseudomonas putida W619 6110751 YP_001748674.1 CDS PputW619_1801 NC_010501.1 2002718 2003494 D KEGG: pen:PSEEN3396 type 1 pili usher pathway chaperone CsuC; type 1 pili usher pathway chaperone CsuC 2002718..2003494 Pseudomonas putida W619 6110752 YP_001748675.1 CDS PputW619_1802 NC_010501.1 2003555 2005900 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: pen:PSEEN3395 type 1 pili usher protein CsuD; fimbrial biogenesis outer membrane usher protein 2003555..2005900 Pseudomonas putida W619 6110753 YP_001748676.1 CDS PputW619_1803 NC_010501.1 2005897 2006868 D PFAM: Spore coat U domain protein; KEGG: pen:PSEEN3394 type 1 pili protein CsuE; spore coat U domain-containing protein 2005897..2006868 Pseudomonas putida W619 6110754 YP_001748677.1 CDS PputW619_1804 NC_010501.1 2006928 2008076 R PFAM: peptidase M14 carboxypeptidase A; KEGG: pen:PSEEN3393 zinc-dependent carboxypeptidase (M14 family); peptidase M14 carboxypeptidase A complement(2006928..2008076) Pseudomonas putida W619 6110755 YP_001748678.1 CDS PputW619_1805 NC_010501.1 2008405 2009580 D PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_5357 major facilitator superfamily MFS_1; major facilitator transporter 2008405..2009580 Pseudomonas putida W619 6110756 YP_001748679.1 CDS PputW619_1806 NC_010501.1 2009624 2010139 R PFAM: Sigma-70 region 4 type 2; KEGG: pen:PSEEN3392 hypothetical protein; sigma-70 region 4 type 2 complement(2009624..2010139) Pseudomonas putida W619 6110757 YP_001748680.1 CDS PputW619_1807 NC_010501.1 2010575 2010886 R KEGG: pen:PSEEN3391 hypothetical protein; hypothetical protein complement(2010575..2010886) Pseudomonas putida W619 6110758 YP_001748681.1 CDS PputW619_1808 NC_010501.1 2010975 2011682 D PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN3390 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator 2010975..2011682 Pseudomonas putida W619 6110759 YP_001748682.1 CDS PputW619_1809 NC_010501.1 2011722 2013674 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pen:PSEEN3389 methylcrotonoyl-CoA carboxylase alpha chain; carbamoyl-phosphate synthase L chain ATP-binding complement(2011722..2013674) Pseudomonas putida W619 6110760 YP_001748683.1 CDS PputW619_1810 NC_010501.1 2013671 2014486 R catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase complement(2013671..2014486) Pseudomonas putida W619 6110761 YP_001748684.1 CDS PputW619_1811 NC_010501.1 2014490 2016097 R PFAM: carboxyl transferase; KEGG: pen:PSEEN3387 3-methylcrotonyl-CoA carboxylase, beta subunit; propionyl-CoA carboxylase complement(2014490..2016097) Pseudomonas putida W619 6110762 YP_001748685.1 CDS PputW619_1812 NC_010501.1 2016117 2017280 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3386 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2016117..2017280) Pseudomonas putida W619 6110763 YP_001748686.1 CDS PputW619_1813 NC_010501.1 2017497 2019179 D PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3384 long-chain-fatty-acid-CoA ligase; AMP-binding domain-containing protein 2017497..2019179 Pseudomonas putida W619 6110764 YP_001748687.1 CDS PputW619_1814 NC_010501.1 2019263 2019424 R KEGG: pen:PSEEN2043 hypothetical protein; hypothetical protein complement(2019263..2019424) Pseudomonas putida W619 6110765 YP_001748688.1 CDS PputW619_1815 NC_010501.1 2019564 2021582 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pen:PSEEN2044 glycosidase, alpha-amylase family protein; alpha amylase 2019564..2021582 Pseudomonas putida W619 6110766 YP_001748689.1 CDS PputW619_1816 NC_010501.1 2021625 2024942 D KEGG: pen:PSEEN2045 trehalose synthase/glycosidase fusion protein; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 2021625..2024942 Pseudomonas putida W619 6110767 YP_001748690.1 CDS PputW619_1817 NC_010501.1 2024943 2027153 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2024943..2027153 Pseudomonas putida W619 6110768 YP_001748691.1 CDS PputW619_1818 NC_010501.1 2027210 2028286 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN2047 outer membrane, autotransporter barrel domain protein; outer membrane autotransporter complement(2027210..2028286) Pseudomonas putida W619 6110769 YP_001748692.1 CDS PputW619_1819 NC_010501.1 2028704 2030857 R KEGG: pen:PSEEN2049 glycosyl hydrolase GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX complement(2028704..2030857) Pseudomonas putida W619 6110770 YP_001748693.1 CDS PputW619_1820 NC_010501.1 2031002 2031286 R KEGG: pen:PSEEN2050 hypothetical protein; hypothetical protein complement(2031002..2031286) Pseudomonas putida W619 6110771 YP_001748694.1 CDS PputW619_1821 NC_010501.1 2031301 2034075 R KEGG: pen:PSEEN2051 maltooligosyl trehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; maltooligosyl trehalose synthase complement(2031301..2034075) Pseudomonas putida W619 6110772 YP_001748695.1 CDS PputW619_1822 NC_010501.1 2034072 2036141 R KEGG: pen:PSEEN2052 4-alpha-glucanotransferase MalQ; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase complement(2034072..2036141) Pseudomonas putida W619 6110773 YP_001748696.1 CDS PputW619_1823 NC_010501.1 2036138 2037880 R KEGG: pen:PSEEN2053 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; malto-oligosyltrehalose trehalohydrolase complement(2036138..2037880) Pseudomonas putida W619 6110774 YP_001748697.1 CDS glgA NC_010501.1 2037895 2039454 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(2037895..2039454) Pseudomonas putida W619 6110775 YP_001748698.1 CDS PputW619_1825 NC_010501.1 2039989 2040819 R PFAM: putative esterase; KEGG: bcy:Bcer98_2405 putative esterase; putative esterase complement(2039989..2040819) Pseudomonas putida W619 6110776 YP_001748699.1 CDS PputW619_1826 NC_010501.1 2040831 2043170 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_5189 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2040831..2043170) Pseudomonas putida W619 6110777 YP_001748700.1 CDS PputW619_1827 NC_010501.1 2043223 2044152 R PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor; anti-FecI sigma factor FecR complement(2043223..2044152) Pseudomonas putida W619 6110778 YP_001748701.1 CDS PputW619_1828 NC_010501.1 2044149 2044658 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA2468 probable sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor complement(2044149..2044658) Pseudomonas putida W619 6110779 YP_001748702.1 CDS PputW619_1829 NC_010501.1 2044785 2044952 R KEGG: pen:PSEEN1938 hypothetical protein; hypothetical protein complement(2044785..2044952) Pseudomonas putida W619 6110780 YP_001748703.1 CDS PputW619_1830 NC_010501.1 2045156 2046139 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2045156..2046139 Pseudomonas putida W619 6110781 YP_001748704.1 CDS PputW619_1831 NC_010501.1 2046136 2047641 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2046136..2047641 Pseudomonas putida W619 6110782 YP_001748705.1 CDS PputW619_1833 NC_010501.1 2049604 2050224 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN3246 transcriptional regulator, TetR family; TetR family transcriptional regulator 2049604..2050224 Pseudomonas putida W619 6110784 YP_001748706.1 CDS PputW619_1834 NC_010501.1 2050303 2051577 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(2050303..2051577) Pseudomonas putida W619 6110785 YP_001748707.1 CDS PputW619_1835 NC_010501.1 2051578 2052945 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(2051578..2052945) Pseudomonas putida W619 6110786 YP_001748708.1 CDS PputW619_1836 NC_010501.1 2053107 2054546 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(2053107..2054546) Pseudomonas putida W619 6110787 YP_001748709.1 CDS PputW619_1837 NC_010501.1 2055163 2056665 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3254 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease 2055163..2056665 Pseudomonas putida W619 6110788 YP_001748710.1 CDS PputW619_1838 NC_010501.1 2056679 2057962 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2056679..2057962 Pseudomonas putida W619 6110789 YP_001748711.1 CDS PputW619_1839 NC_010501.1 2058036 2059001 R PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN2683 ribonuclease Z; ribonuclease Z complement(2058036..2059001) Pseudomonas putida W619 6110790 YP_001748712.1 CDS PputW619_1840 NC_010501.1 2059064 2059630 R PFAM: Lipocalin family protein; KEGG: pmy:Pmen_0511 lipocalin family protein; lipocalin family protein complement(2059064..2059630) Pseudomonas putida W619 6110791 YP_001748713.1 CDS PputW619_1841 NC_010501.1 2059837 2060649 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2059837..2060649 Pseudomonas putida W619 6110792 YP_001748714.1 CDS nudC NC_010501.1 2060683 2061513 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2060683..2061513 Pseudomonas putida W619 6110793 YP_001748715.1 CDS PputW619_1843 NC_010501.1 2061481 2062260 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2185 hypothetical protein; hypothetical protein complement(2061481..2062260) Pseudomonas putida W619 6110794 YP_001748716.1 CDS PputW619_1844 NC_010501.1 2062464 2063294 R PFAM: alpha/beta hydrolase fold; KEGG: pap:PSPA7_3995 chloroperoxidase precursor; alpha/beta hydrolase fold family protein complement(2062464..2063294) Pseudomonas putida W619 6110795 YP_001748717.1 CDS PputW619_1845 NC_010501.1 2063393 2064748 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2186 glutamine synthetase; glutamine synthetase complement(2063393..2064748) Pseudomonas putida W619 6110796 YP_001748718.1 CDS PputW619_1846 NC_010501.1 2064758 2065309 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2187 transcriptional regulator; XRE family transcriptional regulator complement(2064758..2065309) Pseudomonas putida W619 6110797 YP_001748719.1 CDS PputW619_1847 NC_010501.1 2065302 2066591 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2188 oxidoreductase with FAD/NAD(P)-binding domain; FAD dependent oxidoreductase complement(2065302..2066591) Pseudomonas putida W619 6110798 YP_001748720.1 CDS PputW619_1848 NC_010501.1 2066727 2067614 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2190 transcriptional regulator, Lys R family; LysR family transcriptional regulator 2066727..2067614 Pseudomonas putida W619 6110799 YP_001748721.1 CDS PputW619_1849 NC_010501.1 2067708 2068817 D KEGG: pen:PSEEN2191 porphyromonas-type peptidyl-arginine deiminase; TIGRFAM: agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; agmatine deiminase 2067708..2068817 Pseudomonas putida W619 6110800 YP_001748722.1 CDS PputW619_1850 NC_010501.1 2068817 2069917 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2192 periplasmic polyamine-binding protein; extracellular solute-binding protein 2068817..2069917 Pseudomonas putida W619 6110801 YP_001748723.1 CDS PputW619_1851 NC_010501.1 2069968 2070966 R PFAM: alpha/beta hydrolase fold; KEGG: pst:PSPTO_3264 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(2069968..2070966) Pseudomonas putida W619 6110802 YP_001748724.1 CDS PputW619_1852 NC_010501.1 2071042 2071479 R KEGG: pen:PSEEN3504 hypothetical protein; hypothetical protein complement(2071042..2071479) Pseudomonas putida W619 6110803 YP_001748725.1 CDS PputW619_1853 NC_010501.1 2071479 2071907 R PFAM: protein of unknown function DUF411; KEGG: pen:PSEEN3503 hypothetical protein; hypothetical protein complement(2071479..2071907) Pseudomonas putida W619 6110804 YP_001748726.1 CDS PputW619_1854 NC_010501.1 2072024 2073385 R PFAM: peptidase U32; KEGG: pen:PSEEN3499 protease, U32 family; peptidase U32 complement(2072024..2073385) Pseudomonas putida W619 6110805 YP_001748727.1 CDS PputW619_1855 NC_010501.1 2073515 2074579 D PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3498 hypothetical protein; hypothetical protein 2073515..2074579 Pseudomonas putida W619 6110806 YP_001748728.1 CDS PputW619_1856 NC_010501.1 2074608 2076674 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3497 TonB-dependent siderophore receptor; TonB-dependent receptor complement(2074608..2076674) Pseudomonas putida W619 6110807 YP_001748729.1 CDS PputW619_1857 NC_010501.1 2076905 2077153 D PFAM: regulatory protein LuxR; KEGG: aav:Aave_3810 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 2076905..2077153 Pseudomonas putida W619 6110808 YP_001748730.1 CDS PputW619_1858 NC_010501.1 2077161 2077523 D KEGG: bte:BTH_II1345 hypothetical protein; hypothetical protein 2077161..2077523 Pseudomonas putida W619 6110809 YP_001748731.1 CDS PputW619_1859 NC_010501.1 2077520 2077906 R PFAM: CI repressor; KEGG: tdn:Tmden_0804 hypothetical protein; CI repressor complement(2077520..2077906) Pseudomonas putida W619 6110810 YP_001748732.1 CDS PputW619_1860 NC_010501.1 2078108 2078383 D PFAM: transcriptional activator Ogr/delta; KEGG: csa:Csal_1361 hypothetical protein; transcriptional activator Ogr/delta 2078108..2078383 Pseudomonas putida W619 6110811 YP_001748733.1 CDS PputW619_1861 NC_010501.1 2078458 2079927 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2078458..2079927) Pseudomonas putida W619 6110812 YP_001748734.1 CDS PputW619_1862 NC_010501.1 2079935 2081467 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2079935..2081467) Pseudomonas putida W619 6110813 YP_001748735.1 CDS PputW619_1863 NC_010501.1 2081508 2083361 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2081508..2083361) Pseudomonas putida W619 6110814 YP_001748736.1 CDS PputW619_1864 NC_010501.1 2083358 2083666 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2083358..2083666) Pseudomonas putida W619 6110815 YP_001748737.1 CDS PputW619_1865 NC_010501.1 2083670 2084170 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2083670..2084170) Pseudomonas putida W619 6110816 YP_001748738.1 CDS PputW619_1866 NC_010501.1 2084181 2084729 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2084181..2084729) Pseudomonas putida W619 6110817 YP_001748739.1 CDS PputW619_1867 NC_010501.1 2084741 2085748 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2084741..2085748) Pseudomonas putida W619 6110818 YP_001748740.1 CDS PputW619_1868 NC_010501.1 2085745 2088459 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2085745..2088459) Pseudomonas putida W619 6110819 YP_001748741.1 CDS PputW619_1869 NC_010501.1 2088592 2089968 R shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase subunit I F complement(2088592..2089968) Pseudomonas putida W619 6110820 YP_001748742.1 CDS PputW619_1870 NC_010501.1 2089965 2090462 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2089965..2090462) Pseudomonas putida W619 6110821 YP_001748743.1 CDS PputW619_1871 NC_010501.1 2090465 2092246 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2090465..2092246) Pseudomonas putida W619 6110822 YP_001748744.1 CDS PputW619_1872 NC_010501.1 2092326 2093003 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2092326..2093003) Pseudomonas putida W619 6110823 YP_001748745.1 CDS PputW619_1873 NC_010501.1 2093014 2093427 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2093014..2093427) Pseudomonas putida W619 6110824 YP_001748746.1 CDS PputW619_1874 NC_010501.1 2094085 2095110 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3442 transcriptional regulator, AraC family; AraC family transcriptional regulator 2094085..2095110 Pseudomonas putida W619 6110825 YP_001748747.1 CDS PputW619_1875 NC_010501.1 2095168 2096277 R KEGG: csa:Csal_2941 hypothetical protein; hypothetical protein complement(2095168..2096277) Pseudomonas putida W619 6110826 YP_001748748.1 CDS PputW619_1876 NC_010501.1 2096523 2098289 D KEGG: pae:PA1242 hypothetical protein; hypothetical protein 2096523..2098289 Pseudomonas putida W619 6110827 YP_001748749.1 CDS PputW619_1877 NC_010501.1 2098346 2100259 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: pen:PSEEN3441 protein-tyrosine phosphatase; autotransporter; protein tyrosine/serine phosphatase complement(2098346..2100259) Pseudomonas putida W619 6110828 YP_001748750.1 CDS PputW619_1878 NC_010501.1 2100432 2100896 R PFAM: protein of unknown function DUF1348; KEGG: sit:TM1040_2246 protein of unknown function DUF1348; hypothetical protein complement(2100432..2100896) Pseudomonas putida W619 6110829 YP_001748751.1 CDS PputW619_1879 NC_010501.1 2101020 2102201 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3412 transporter, MFS superfamily; major facilitator transporter complement(2101020..2102201) Pseudomonas putida W619 6110830 YP_001748752.1 CDS dkgB NC_010501.1 2102277 2103080 R catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B complement(2102277..2103080) Pseudomonas putida W619 6110831 YP_001748753.1 CDS PputW619_1881 NC_010501.1 2103279 2104856 R KEGG: pen:PSEEN3409 hypothetical protein; hypothetical protein complement(2103279..2104856) Pseudomonas putida W619 6110832 YP_001748754.1 CDS PputW619_1882 NC_010501.1 2105008 2110242 D SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN1194 hypothetical protein; hypothetical protein 2105008..2110242 Pseudomonas putida W619 6110833 YP_001748755.1 CDS PputW619_1883 NC_010501.1 2110314 2110808 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN3408 hypothetical protein; hypothetical protein complement(2110314..2110808) Pseudomonas putida W619 6110834 YP_001748756.1 CDS PputW619_1884 NC_010501.1 2110792 2112444 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN3407 ferredoxin-nitrite reductase; sulfite reductase (ferredoxin) complement(2110792..2112444) Pseudomonas putida W619 6110835 YP_001748757.1 CDS PputW619_1885 NC_010501.1 2112660 2113736 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN3405 periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator 2112660..2113736 Pseudomonas putida W619 6110836 YP_001748758.1 CDS PputW619_1886 NC_010501.1 2113822 2113935 D KEGG: pen:PSEEN3404 hypothetical protein; hypothetical protein 2113822..2113935 Pseudomonas putida W619 6110837 YP_001748759.1 CDS PputW619_1887 NC_010501.1 2114003 2114221 R KEGG: pen:PSEEN2042 hypothetical protein; hypothetical protein complement(2114003..2114221) Pseudomonas putida W619 6110838 YP_001748760.1 CDS metH NC_010501.1 2114299 2118006 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(2114299..2118006) Pseudomonas putida W619 6110839 YP_001748761.1 CDS PputW619_1889 NC_010501.1 2118176 2120476 D PFAM: fatty acid cistrans isomerase; KEGG: pen:PSEEN3381 esterified fatty acid cis/trans isomerase; fatty acid cistrans isomerase 2118176..2120476 Pseudomonas putida W619 6110840 YP_001748762.1 CDS PputW619_1890 NC_010501.1 2120589 2121623 D PFAM: acyltransferase 3; KEGG: pen:PSEEN3380 acetyltransferase Act; acyltransferase 3 2120589..2121623 Pseudomonas putida W619 6110841 YP_001748763.1 CDS PputW619_1891 NC_010501.1 2121682 2122266 D TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: pen:PSEEN3379 hypothetical protein; IscR-regulated protein YhgI 2121682..2122266 Pseudomonas putida W619 6110842 YP_001748764.1 CDS PputW619_1892 NC_010501.1 2122480 2123088 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN3378 hypothetical protein; electron transport protein SCO1/SenC 2122480..2123088 Pseudomonas putida W619 6110843 YP_001748765.1 CDS PputW619_1893 NC_010501.1 2123088 2123576 D PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN3377 hypothetical protein; hypothetical protein 2123088..2123576 Pseudomonas putida W619 6110844 YP_001748766.1 CDS PputW619_1894 NC_010501.1 2123610 2123837 R KEGG: pen:PSEEN3376 hypothetical protein; hypothetical protein complement(2123610..2123837) Pseudomonas putida W619 6110845 YP_001748767.1 CDS PputW619_1895 NC_010501.1 2123878 2124711 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3375 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2123878..2124711) Pseudomonas putida W619 6110846 YP_001748768.1 CDS PputW619_1896 NC_010501.1 2124708 2125022 R PFAM: branched-chain amino acid transport; KEGG: pen:PSEEN3374 hypothetical protein; branched-chain amino acid transport complement(2124708..2125022) Pseudomonas putida W619 6110847 YP_001748769.1 CDS PputW619_1897 NC_010501.1 2125019 2125720 R PFAM: AzlC family protein; KEGG: pen:PSEEN3373 branched-chain amino acid transport protein, AzlC; AzlC family protein complement(2125019..2125720) Pseudomonas putida W619 6110848 YP_001748770.1 CDS PputW619_1898 NC_010501.1 2125817 2126512 R KEGG: pen:PSEEN3372 hypothetical protein; hypothetical protein complement(2125817..2126512) Pseudomonas putida W619 6110849 YP_001748771.1 CDS PputW619_1899 NC_010501.1 2126669 2127763 R KEGG: pen:PSEEN3371 hypothetical protein; hypothetical protein complement(2126669..2127763) Pseudomonas putida W619 6110850 YP_001748772.1 CDS PputW619_1900 NC_010501.1 2127806 2128432 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3370 transporter, LysE family; lysine exporter protein LysE/YggA complement(2127806..2128432) Pseudomonas putida W619 6110851 YP_001748773.1 CDS PputW619_1901 NC_010501.1 2128435 2129217 R PFAM: Protein of unknown function YqcI/YcgG; KEGG: pen:PSEEN3369 hypothetical protein; hypothetical protein complement(2128435..2129217) Pseudomonas putida W619 6110852 YP_001748774.1 CDS PputW619_1902 NC_010501.1 2129378 2130298 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3368 transcriptional regulator, LysR family; LysR family transcriptional regulator 2129378..2130298 Pseudomonas putida W619 6110853 YP_001748775.1 CDS PputW619_1903 NC_010501.1 2130372 2132732 D Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 2130372..2132732 Pseudomonas putida W619 6110854 YP_001748776.1 CDS PputW619_1904 NC_010501.1 2132812 2137308 D SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein 2132812..2137308 Pseudomonas putida W619 6110855 YP_001748777.1 CDS PputW619_1905 NC_010501.1 2137537 2138088 D KEGG: pen:PSEEN3357 hypothetical protein; hypothetical protein 2137537..2138088 Pseudomonas putida W619 6110856 YP_001748778.1 CDS PputW619_1906 NC_010501.1 2138217 2138705 R PFAM: DoxX family protein; KEGG: pen:PSEEN3339 hypothetical protein; DoxX family protein complement(2138217..2138705) Pseudomonas putida W619 6110857 YP_001748779.1 CDS PputW619_1907 NC_010501.1 2138720 2139337 R PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: pen:PSEEN3338 hypothetical protein; ferric reductase domain-containing protein complement(2138720..2139337) Pseudomonas putida W619 6110858 YP_001748780.1 CDS PputW619_1908 NC_010501.1 2139499 2140785 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2402 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2139499..2140785) Pseudomonas putida W619 6110859 YP_001748781.1 CDS PputW619_1909 NC_010501.1 2140782 2141522 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2403 two-component response regulator; two component transcriptional regulator complement(2140782..2141522) Pseudomonas putida W619 6110860 YP_001748782.1 CDS PputW619_1910 NC_010501.1 2141722 2142015 D KEGG: pen:PSEEN2405 hypothetical protein; hypothetical protein 2141722..2142015 Pseudomonas putida W619 6110861 YP_001748783.1 CDS PputW619_1911 NC_010501.1 2141987 2142541 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2406 thioredoxin; redoxin domain-containing protein 2141987..2142541 Pseudomonas putida W619 6110862 YP_001748784.1 CDS PputW619_1912 NC_010501.1 2142592 2143440 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2142592..2143440) Pseudomonas putida W619 6110863 YP_001748785.1 CDS PputW619_1913 NC_010501.1 2143437 2143895 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2143437..2143895) Pseudomonas putida W619 6110864 YP_001748786.1 CDS PputW619_1914 NC_010501.1 2144072 2145409 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pst:PSPTO_3801 major facilitator family transporter; major facilitator transporter complement(2144072..2145409) Pseudomonas putida W619 6110865 YP_001748787.1 CDS PputW619_1915 NC_010501.1 2145603 2146286 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_0307 GntR domain protein; GntR family transcriptional regulator complement(2145603..2146286) Pseudomonas putida W619 6110866 YP_001748788.1 CDS PputW619_1916 NC_010501.1 2146565 2147350 D PFAM: extracellular solute-binding protein family 3; KEGG: pmy:Pmen_0306 extracellular solute-binding protein, family 3; extracellular solute-binding protein 2146565..2147350 Pseudomonas putida W619 6110867 YP_001748789.1 CDS PputW619_1917 NC_010501.1 2147373 2148038 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmy:Pmen_0305 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 2147373..2148038 Pseudomonas putida W619 6110868 YP_001748790.1 CDS PputW619_1918 NC_010501.1 2148039 2148686 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_5461 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 2148039..2148686 Pseudomonas putida W619 6110869 YP_001748791.1 CDS PputW619_1919 NC_010501.1 2148673 2149407 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_0295 ABC transporter; ABC transporter-like protein 2148673..2149407 Pseudomonas putida W619 6110870 YP_001748792.1 CDS PputW619_1920 NC_010501.1 2149429 2150205 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN0365 chromosome partitioning protein, ParA family; cobyrinic acid ac-diamide synthase complement(2149429..2150205) Pseudomonas putida W619 6110871 YP_001748793.1 CDS PputW619_1921 NC_010501.1 2150330 2150674 R KEGG: aba:Acid345_0296 hypothetical protein; hypothetical protein complement(2150330..2150674) Pseudomonas putida W619 6110872 YP_001748794.1 CDS PputW619_1922 NC_010501.1 2150759 2152342 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3185 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2150759..2152342) Pseudomonas putida W619 6110873 YP_001748795.1 CDS PputW619_1923 NC_010501.1 2152429 2152908 R KEGG: pen:PSEEN3184 hypothetical protein; hypothetical protein complement(2152429..2152908) Pseudomonas putida W619 6110874 YP_001748796.1 CDS PputW619_1924 NC_010501.1 2153026 2153526 D PFAM: GCN5-related N-acetyltransferase; KEGG: psp:PSPPH_3010 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2153026..2153526 Pseudomonas putida W619 6110875 YP_001748797.1 CDS PputW619_1925 NC_010501.1 2153613 2154950 R PFAM: outer membrane porin; KEGG: pen:PSEEN2388 porin, OprD family; outer membrane porin complement(2153613..2154950) Pseudomonas putida W619 6110876 YP_001748798.1 CDS PputW619_1926 NC_010501.1 2154947 2155381 R TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: rru:Rru_A1139 blue (type 1) copper subtype; pseudoazurin complement(2154947..2155381) Pseudomonas putida W619 6110877 YP_001748799.1 CDS PputW619_1927 NC_010501.1 2155398 2156186 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psb:Psyr_3096 ABC transporter; ABC transporter-like protein complement(2155398..2156186) Pseudomonas putida W619 6110878 YP_001748800.1 CDS PputW619_1928 NC_010501.1 2156183 2157190 R PFAM: transport system permease protein; ABC-3 protein; KEGG: psp:PSPPH_3007 iron ABC transporter, permease protein, putative; transport system permease complement(2156183..2157190) Pseudomonas putida W619 6110879 YP_001748801.1 CDS PputW619_1929 NC_010501.1 2157199 2158209 R PFAM: periplasmic binding protein; KEGG: psb:Psyr_3094 periplasmic binding protein; periplasmic binding protein complement(2157199..2158209) Pseudomonas putida W619 6110880 YP_001748802.1 CDS PputW619_1930 NC_010501.1 2158547 2159713 R PFAM: protein of unknown function DUF1624; KEGG: pen:PSEEN2389 hypothetical protein; hypothetical protein complement(2158547..2159713) Pseudomonas putida W619 6110881 YP_001748803.1 CDS PputW619_1931 NC_010501.1 2159827 2161998 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2012 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor complement(2159827..2161998) Pseudomonas putida W619 6110882 YP_001748804.1 CDS PputW619_1932 NC_010501.1 2162319 2163467 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3041 polyamine ABC transporter, ATP binding protein; ABC transporter-like protein complement(2162319..2163467) Pseudomonas putida W619 6110883 YP_001748805.1 CDS PputW619_1933 NC_010501.1 2163487 2164296 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3040 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2163487..2164296) Pseudomonas putida W619 6110884 YP_001748806.1 CDS PputW619_1934 NC_010501.1 2164303 2165220 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3039 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2164303..2165220) Pseudomonas putida W619 6110885 YP_001748807.1 CDS PputW619_1935 NC_010501.1 2165217 2166242 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN3038 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(2165217..2166242) Pseudomonas putida W619 6110886 YP_001748808.1 CDS PputW619_1936 NC_010501.1 2166532 2167647 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein complement(2166532..2167647) Pseudomonas putida W619 6110887 YP_001748809.1 CDS PputW619_1937 NC_010501.1 2167726 2168019 D PFAM: protein of unknown function DUF1330; KEGG: pen:PSEEN3036 hypothetical protein; hypothetical protein 2167726..2168019 Pseudomonas putida W619 6110888 YP_001748810.1 CDS PputW619_1938 NC_010501.1 2168120 2168866 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2990 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2168120..2168866 Pseudomonas putida W619 6110889 YP_001748811.1 CDS PputW619_1939 NC_010501.1 2168877 2170952 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2989 sensory box histidine kinase/response regulator (hybrid); PAS/PAC sensor hybrid histidine kinase complement(2168877..2170952) Pseudomonas putida W619 6110890 YP_001748812.1 CDS PputW619_1940 NC_010501.1 2171055 2172464 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2988 transcriptional regulator, GntR family; transcriptional regulator complement(2171055..2172464) Pseudomonas putida W619 6110891 YP_001748813.1 CDS PputW619_1941 NC_010501.1 2172588 2172827 R KEGG: pfl:PFL_2870 hypothetical protein; hypothetical protein complement(2172588..2172827) Pseudomonas putida W619 6110892 YP_001748814.1 CDS PputW619_1942 NC_010501.1 2173019 2173537 D PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN2986 transporter, MgtC family; MgtC/SapB transporter 2173019..2173537 Pseudomonas putida W619 6110893 YP_001748815.1 CDS PputW619_1943 NC_010501.1 2174069 2174968 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(2174069..2174968) Pseudomonas putida W619 6110894 YP_001748816.1 CDS PputW619_1944 NC_010501.1 2174989 2175387 R PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN2982 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2174989..2175387) Pseudomonas putida W619 6110895 YP_001748817.1 CDS PputW619_1945 NC_010501.1 2175498 2176376 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3049 transcriptional regulator PobR; AraC family transcriptional regulator complement(2175498..2176376) Pseudomonas putida W619 6110896 YP_001748818.1 CDS PputW619_1946 NC_010501.1 2176507 2177694 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2176507..2177694 Pseudomonas putida W619 6110897 YP_001748819.1 CDS PputW619_1947 NC_010501.1 2177826 2178005 R KEGG: pen:PSEEN2162 hypothetical protein; hypothetical protein complement(2177826..2178005) Pseudomonas putida W619 6110898 YP_001748820.1 CDS PputW619_1948 NC_010501.1 2178102 2178905 D KEGG: pen:PSEEN2163 hypothetical protein; hypothetical protein 2178102..2178905 Pseudomonas putida W619 6110899 YP_001748821.1 CDS PputW619_1949 NC_010501.1 2178966 2180249 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2164 FAD-dependant oxidoreductase; FAD dependent oxidoreductase complement(2178966..2180249) Pseudomonas putida W619 6110900 YP_001748822.1 CDS PputW619_1950 NC_010501.1 2180852 2181490 D PFAM: Sporulation domain protein; KEGG: pen:PSEEN2166 hypothetical protein; sporulation domain-containing protein 2180852..2181490 Pseudomonas putida W619 6110903 YP_001748823.1 CDS PputW619_1951 NC_010501.1 2181669 2182094 D KEGG: pen:PSEEN1948 hypothetical protein; hypothetical protein 2181669..2182094 Pseudomonas putida W619 6110904 YP_001748824.1 CDS PputW619_1952 NC_010501.1 2182115 2182552 R KEGG: pde:Pden_1337 hypothetical protein; hypothetical protein complement(2182115..2182552) Pseudomonas putida W619 6110905 YP_001748825.1 CDS PputW619_1953 NC_010501.1 2182652 2183083 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: pfl:PFL_6174 RNA polymerase-binding protein DksA, putative; TraR/DksA family transcriptional regulator 2182652..2183083 Pseudomonas putida W619 6110906 YP_001748826.1 CDS PputW619_1954 NC_010501.1 2183136 2183378 R PFAM: protein of unknown function DUF1654; KEGG: pen:PSEEN1950 hypothetical protein; hypothetical protein complement(2183136..2183378) Pseudomonas putida W619 6110907 YP_001748827.1 CDS PputW619_1955 NC_010501.1 2183545 2184633 R KEGG: pen:PSEEN1951 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; type II L-asparaginase complement(2183545..2184633) Pseudomonas putida W619 6110908 YP_001748828.1 CDS PputW619_1956 NC_010501.1 2184975 2185931 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1952 ribose ABC transporter, periplasmic ribose-binding protein RbsB; monosaccharide-transporting ATPase 2184975..2185931 Pseudomonas putida W619 6110909 YP_001748829.1 CDS PputW619_1957 NC_010501.1 2185950 2187503 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1953 ribose ABC transporter, ATP-binding protein RbsA; ABC transporter-like protein 2185950..2187503 Pseudomonas putida W619 6110910 YP_001748830.1 CDS PputW619_1958 NC_010501.1 2187500 2188495 D PFAM: inner-membrane translocator; KEGG: pen:PSEEN1954 ribose ABC transporter, permease protein RbsC; monosaccharide-transporting ATPase 2187500..2188495 Pseudomonas putida W619 6110911 YP_001748831.1 CDS PputW619_1959 NC_010501.1 2188500 2189522 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN1955 ribose operon repressor RbsR; LacI family transcriptional regulator 2188500..2189522 Pseudomonas putida W619 6110912 YP_001748832.1 CDS PputW619_1960 NC_010501.1 2189532 2190440 D TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: pen:PSEEN1956 ribokinase RbsK; ribokinase 2189532..2190440 Pseudomonas putida W619 6110913 YP_001748833.1 CDS PputW619_1961 NC_010501.1 2190437 2190835 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2190437..2190835 Pseudomonas putida W619 6110914 YP_001748834.1 CDS PputW619_1962 NC_010501.1 2190926 2191933 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pen:PSEEN1958 inosine-uridine preferring nucleoside hydrolase; inosine/uridine-preferring nucleoside hydrolase 2190926..2191933 Pseudomonas putida W619 6110915 YP_001748835.1 CDS PputW619_1963 NC_010501.1 2191905 2192117 R KEGG: pen:PSEEN1959 hypothetical protein; hypothetical protein complement(2191905..2192117) Pseudomonas putida W619 6110916 YP_001748836.1 CDS PputW619_1964 NC_010501.1 2192403 2192723 D KEGG: pen:PSEEN1960 hypothetical protein; hypothetical protein 2192403..2192723 Pseudomonas putida W619 6110917 YP_001748837.1 CDS PputW619_1965 NC_010501.1 2192900 2193112 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN1961 cold shock protein CapA; cold-shock DNA-binding domain-containing protein complement(2192900..2193112) Pseudomonas putida W619 6110918 YP_001748838.1 CDS PputW619_1966 NC_010501.1 2193272 2193574 R KEGG: pen:PSEEN1962 hypothetical protein; hypothetical protein complement(2193272..2193574) Pseudomonas putida W619 6110919 YP_001748839.1 CDS thrS NC_010501.1 2193910 2195832 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2193910..2195832 Pseudomonas putida W619 6110920 YP_001748840.1 CDS infC NC_010501.1 2195832 2196383 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2195832..2196383 Pseudomonas putida W619 6110921 YP_001748841.1 CDS rpmI NC_010501.1 2196444 2196638 D PFAM: ribosomal protein L35; KEGG: pen:PSEEN1965 50S ribosomal subunit protein A; 50S ribosomal protein L35 2196444..2196638 Pseudomonas putida W619 6110922 YP_001748842.1 CDS rplT NC_010501.1 2196667 2197023 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2196667..2197023 Pseudomonas putida W619 6110923 YP_001748843.1 CDS pheS NC_010501.1 2197134 2198150 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2197134..2198150 Pseudomonas putida W619 6110924 YP_001748844.1 CDS pheT NC_010501.1 2198182 2200563 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2198182..2200563 Pseudomonas putida W619 6110925 YP_001748845.1 CDS ihfA NC_010501.1 2200568 2200870 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2200568..2200870 Pseudomonas putida W619 6110926 YP_001748846.1 CDS PputW619_1974 NC_010501.1 2200851 2201207 D PFAM: regulatory protein MerR; KEGG: pen:PSEEN1970 transcriptional regulator, MerR family; MerR family transcriptional regulator 2200851..2201207 Pseudomonas putida W619 6110927 YP_001748847.1 CDS PputW619_1975 NC_010501.1 2201601 2201921 R PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: pfo:Pfl_3015 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein complement(2201601..2201921) Pseudomonas putida W619 6110929 YP_001748848.1 CDS PputW619_1978 NC_010501.1 2203784 2204605 R activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional activator MhpR complement(2203784..2204605) Pseudomonas putida W619 6110931 YP_001748849.1 CDS mhpA NC_010501.1 2204932 2206599 D catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 2204932..2206599 Pseudomonas putida W619 6110932 YP_001748850.1 CDS mhpB NC_010501.1 2206601 2207545 D catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 2206601..2207545 Pseudomonas putida W619 6110933 YP_001748851.1 CDS PputW619_1981 NC_010501.1 2207565 2208428 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_0911 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2207565..2208428 Pseudomonas putida W619 6110934 YP_001748852.1 CDS mhpD NC_010501.1 2208444 2209238 D catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase 2208444..2209238 Pseudomonas putida W619 6110935 YP_001748853.1 CDS PputW619_1983 NC_010501.1 2209250 2210182 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2209250..2210182 Pseudomonas putida W619 6110936 YP_001748854.1 CDS PputW619_1984 NC_010501.1 2210179 2211192 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2210179..2211192 Pseudomonas putida W619 6110937 YP_001748855.1 CDS PputW619_1985 NC_010501.1 2211257 2212489 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ecj:JW5046 predicted 3-hydroxyphenylpropionic transporter; putative 3-hydroxyphenylpropionic transporter MhpT 2211257..2212489 Pseudomonas putida W619 6110938 YP_001748856.1 CDS PputW619_1986 NC_010501.1 2212526 2214193 D PFAM: sulfatase; KEGG: pfo:Pfl_0208 sulfatase; sulfatase 2212526..2214193 Pseudomonas putida W619 6110939 YP_001748857.1 CDS PputW619_1987 NC_010501.1 2214248 2215540 D PFAM: outer membrane porin; KEGG: pap:PSPA7_4765 probable porin; outer membrane porin 2214248..2215540 Pseudomonas putida W619 6110940 YP_001748858.1 CDS PputW619_1988 NC_010501.1 2215589 2217883 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2; hypothetical protein 2215589..2217883 Pseudomonas putida W619 6110941 YP_001748859.1 CDS PputW619_1989 NC_010501.1 2218142 2218981 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pae:PA1367 hypothetical protein; PhzF family phenazine biosynthesis protein complement(2218142..2218981) Pseudomonas putida W619 6110942 YP_001748860.1 CDS PputW619_1990 NC_010501.1 2219275 2220294 D PFAM: Integrase catalytic region; KEGG: bvi:Bcep1808_7449 integrase, catalytic region; integrase catalytic region 2219275..2220294 Pseudomonas putida W619 6110943 YP_001748861.1 CDS PputW619_1992 NC_010501.1 2222052 2222699 D KEGG: pst:PSPTO_0015 hypothetical protein; hypothetical protein 2222052..2222699 Pseudomonas putida W619 6110945 YP_001748862.1 CDS PputW619_1993 NC_010501.1 2222844 2223542 R KEGG: gme:Gmet_1202 hypothetical protein; hypothetical protein complement(2222844..2223542) Pseudomonas putida W619 6110946 YP_001748863.1 CDS PputW619_1994 NC_010501.1 2223972 2224694 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psb:Psyr_1707 regulatory protein, GntR:bacterial regulatory protein, GntR; GntR family transcriptional regulator complement(2223972..2224694) Pseudomonas putida W619 6110947 YP_001748864.1 CDS PputW619_1995 NC_010501.1 2224963 2226696 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2224963..2226696) Pseudomonas putida W619 6110948 YP_001748865.1 CDS PputW619_1996 NC_010501.1 2226883 2228190 D PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3226 major facilitator superfamily MFS_1; major facilitator transporter 2226883..2228190 Pseudomonas putida W619 6110949 YP_001748866.1 CDS PputW619_1997 NC_010501.1 2228219 2229208 D PFAM: protein of unknown function DUF1238; KEGG: pau:PA14_36060 hypothetical protein; hypothetical protein 2228219..2229208 Pseudomonas putida W619 6110950 YP_001748867.1 CDS PputW619_1998 NC_010501.1 2229373 2230947 D PFAM: Aldehyde Dehydrogenase_; KEGG: pmy:Pmen_0227 aldehyde dehydrogenase; aldehyde dehydrogenase 2229373..2230947 Pseudomonas putida W619 6110951 YP_001748868.1 CDS PputW619_1999 NC_010501.1 2231036 2232367 D PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0742 MFS transporter, ACS family; major facilitator transporter 2231036..2232367 Pseudomonas putida W619 6110952 YP_001748869.1 CDS PputW619_2000 NC_010501.1 2232377 2233333 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pae:PA2263 probable 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 2232377..2233333 Pseudomonas putida W619 6110953 YP_001748870.1 CDS PputW619_2001 NC_010501.1 2233408 2234571 R KEGG: pmy:Pmen_1016 SMC domain protein; SMC domain-containing protein complement(2233408..2234571) Pseudomonas putida W619 6110954 YP_001748871.1 CDS PputW619_2002 NC_010501.1 2234684 2234953 R KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein complement(2234684..2234953) Pseudomonas putida W619 6110955 YP_001748872.1 CDS PputW619_2003 NC_010501.1 2235121 2235363 R KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein complement(2235121..2235363) Pseudomonas putida W619 6110956 YP_001748873.1 CDS PputW619_2004 NC_010501.1 2236231 2237106 R KEGG: bpt:Bpet0543 conserved hypothetical protein, putative esterase/lipase; putative esterase/lipase complement(2236231..2237106) Pseudomonas putida W619 6110957 YP_001748874.1 CDS PputW619_2005 NC_010501.1 2237265 2238608 R PFAM: outer membrane porin; KEGG: pau:PA14_58410 putative outer membrane porin; outer membrane porin complement(2237265..2238608) Pseudomonas putida W619 6110958 YP_001748875.1 CDS PputW619_2006 NC_010501.1 2238693 2239622 R KEGG: hau:Haur_0331 hypothetical protein; esterase/lipase-like protein complement(2238693..2239622) Pseudomonas putida W619 6110959 YP_001748876.1 CDS PputW619_2007 NC_010501.1 2239690 2240709 R catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase complement(2239690..2240709) Pseudomonas putida W619 6110960 YP_001748877.1 CDS PputW619_2008 NC_010501.1 2240712 2241659 R catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase complement(2240712..2241659) Pseudomonas putida W619 6110961 YP_001748878.1 CDS PputW619_2009 NC_010501.1 2241724 2242155 R PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_5138 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2241724..2242155) Pseudomonas putida W619 6110962 YP_001748879.1 CDS PputW619_2010 NC_010501.1 2242159 2242929 R PFAM: Hydratase/decarboxylase; KEGG: bxe:Bxe_A1150 4-oxalocrotonate decarboxylase; 4-oxalocrotonate decarboxylase complement(2242159..2242929) Pseudomonas putida W619 6110963 YP_001748880.1 CDS PputW619_2011 NC_010501.1 2242940 2243722 R PFAM: Hydratase/decarboxylase; KEGG: rso:RS01662 putative hydratase protein; 4-oxalocrotonate decarboxylase complement(2242940..2243722) Pseudomonas putida W619 6110964 YP_001748881.1 CDS PputW619_2012 NC_010501.1 2243719 2245191 R TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: bxe:Bxe_A1147 2-aminomuconic 6-semialdehyde dehydrogenase; 2-hydroxymuconic semialdehyde dehydrogenase complement(2243719..2245191) Pseudomonas putida W619 6110965 YP_001748882.1 CDS PputW619_2013 NC_010501.1 2245416 2246234 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bxe:Bxe_A1146 2-aminophenol 1,6-dioxygenase, alpha subunit; extradiol ring-cleavage dioxygenase class III protein subunit B complement(2245416..2246234) Pseudomonas putida W619 6110966 YP_001748883.1 CDS PputW619_2014 NC_010501.1 2246273 2247190 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: bxe:Bxe_A1145 2-aminophenol 1,6-dioxygenase, beta subunit; extradiol ring-cleavage dioxygenase class III protein subunit B complement(2246273..2247190) Pseudomonas putida W619 6110967 YP_001748884.1 CDS PputW619_2015 NC_010501.1 2247219 2247647 R PFAM: Endoribonuclease L-PSP; KEGG: bxe:Bxe_A1144 putative endoribonuclease, translationalinhibitor protein; endoribonuclease L-PSP complement(2247219..2247647) Pseudomonas putida W619 6110968 YP_001748885.1 CDS PputW619_2016 NC_010501.1 2247882 2248385 D PFAM: regulatory protein MarR; KEGG: bxe:Bxe_A1143 transcriptional regulator, MarR family; MarR family transcriptional regulator 2247882..2248385 Pseudomonas putida W619 6110969 YP_001748886.1 CDS PputW619_2017 NC_010501.1 2248530 2249084 R PFAM: regulatory protein TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2248530..2249084) Pseudomonas putida W619 6110970 YP_001748887.1 CDS PputW619_2018 NC_010501.1 2249214 2250053 D PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0311 alpha/beta hydrolase; alpha/beta hydrolase fold family protein 2249214..2250053 Pseudomonas putida W619 6110971 YP_001748888.1 CDS PputW619_2019 NC_010501.1 2250117 2251118 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA1904 probable zinc-binding dehydrogenase; alcohol dehydrogenase 2250117..2251118 Pseudomonas putida W619 6110972 YP_001748889.1 CDS PputW619_2020 NC_010501.1 2251236 2251649 D PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: pst:PSPTO_1860 hypothetical protein; putative thiol-disulfide oxidoreductase DCC 2251236..2251649 Pseudomonas putida W619 6110973 YP_001748890.1 CDS PputW619_2021 NC_010501.1 2251634 2252194 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2251634..2252194 Pseudomonas putida W619 6110974 YP_001748891.1 CDS PputW619_2022 NC_010501.1 2252230 2252688 D KEGG: psb:Psyr_2639 hypothetical protein; hypothetical protein 2252230..2252688 Pseudomonas putida W619 6110975 YP_001748892.1 CDS PputW619_2023 NC_010501.1 2252725 2253111 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: kpn:KPN_01138 hypothetical protein; cupin complement(2252725..2253111) Pseudomonas putida W619 6110976 YP_001748893.1 CDS PputW619_2024 NC_010501.1 2253183 2254007 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pae:PA2489 probable transcriptional regulator; AraC family transcriptional regulator complement(2253183..2254007) Pseudomonas putida W619 6110977 YP_001748894.1 CDS PputW619_2025 NC_010501.1 2254032 2255555 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_2666 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(2254032..2255555) Pseudomonas putida W619 6110978 YP_001748895.1 CDS PputW619_2026 NC_010501.1 2255825 2256937 R PFAM: protein of unknown function DUF453; KEGG: csa:Csal_0328 protein of unknown function DUF453; hypothetical protein complement(2255825..2256937) Pseudomonas putida W619 6110979 YP_001748896.1 CDS PputW619_2027 NC_010501.1 2256940 2257656 R TIGRFAM: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: spe:Spro_2091 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; hypothetical protein complement(2256940..2257656) Pseudomonas putida W619 6110980 YP_001748897.1 CDS PputW619_2028 NC_010501.1 2257653 2258387 R PFAM: LmbE family protein; KEGG: kpn:KPN_04049 hypothetical protein; LmbE family protein complement(2257653..2258387) Pseudomonas putida W619 6110981 YP_001748898.1 CDS PputW619_2029 NC_010501.1 2258548 2259741 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2093 transcriptional regulator, LysR family; LysR family transcriptional regulator 2258548..2259741 Pseudomonas putida W619 6110982 YP_001748899.1 CDS PputW619_2030 NC_010501.1 2259784 2261046 R extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; protocatechuate 4,5-dioxygenase complement(2259784..2261046) Pseudomonas putida W619 6110983 YP_001748900.1 CDS PputW619_2031 NC_010501.1 2261315 2261926 R PFAM: Ankyrin; KEGG: pap:PSPA7_5252 hypothetical protein; ankyrin complement(2261315..2261926) Pseudomonas putida W619 6110984 YP_001748901.1 CDS PputW619_2032 NC_010501.1 2261932 2263473 R PFAM: Catalase domain protein; KEGG: pen:PSEEN2810 catalase (hydroperoxidase II); catalase complement(2261932..2263473) Pseudomonas putida W619 6110985 YP_001748902.1 CDS PputW619_2033 NC_010501.1 2263699 2263815 D KEGG: psb:Psyr_2216 hypothetical protein; hypothetical protein 2263699..2263815 Pseudomonas putida W619 6110986 YP_001748903.1 CDS PputW619_2034 NC_010501.1 2264036 2265109 D PFAM: aldo/keto reductase; KEGG: kra:Krad_0968 aldo/keto reductase; aldo/keto reductase 2264036..2265109 Pseudomonas putida W619 6110987 YP_001748904.1 CDS PputW619_2035 NC_010501.1 2265117 2266082 R PFAM: PfkB domain protein; KEGG: pen:PSEEN1987 fructokinase; ribokinase-like domain-containing protein complement(2265117..2266082) Pseudomonas putida W619 6110988 YP_001748905.1 CDS PputW619_2036 NC_010501.1 2266124 2267614 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: pen:PSEEN1988 xylulokinase; xylulokinase complement(2266124..2267614) Pseudomonas putida W619 6110989 YP_001748906.1 CDS PputW619_2037 NC_010501.1 2267630 2269105 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: pen:PSEEN1989 mannitol dehydrogenase; mannitol dehydrogenase domain-containing protein complement(2267630..2269105) Pseudomonas putida W619 6110990 YP_001748907.1 CDS PputW619_2038 NC_010501.1 2269117 2270229 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN1990 ATP-binding component of ABC mannitol transporter; ABC transporter-like protein complement(2269117..2270229) Pseudomonas putida W619 6110991 YP_001748908.1 CDS PputW619_2039 NC_010501.1 2270293 2271126 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1991 mannitol ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2270293..2271126) Pseudomonas putida W619 6110992 YP_001748909.1 CDS PputW619_2040 NC_010501.1 2271137 2272060 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1992 mannitol ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(2271137..2272060) Pseudomonas putida W619 6110993 YP_001748910.1 CDS PputW619_2041 NC_010501.1 2272141 2273451 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1993 mannitol ABC transporter, periplasmic mannitol-binding protein; extracellular solute-binding protein complement(2272141..2273451) Pseudomonas putida W619 6110994 YP_001748911.1 CDS PputW619_2042 NC_010501.1 2273594 2274499 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1994 transcriptional activator MltR; AraC family transcriptional regulator complement(2273594..2274499) Pseudomonas putida W619 6110995 YP_001748912.1 CDS PputW619_2043 NC_010501.1 2274622 2275335 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pfl:PFL_3473 transcriptional regulator VanR; GntR family transcriptional regulator 2274622..2275335 Pseudomonas putida W619 6110996 YP_001748913.1 CDS PputW619_2044 NC_010501.1 2275342 2276292 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: psp:PSPPH_2474 vanillate monooxygenase, oxidoreductase subunit; ferredoxin complement(2275342..2276292) Pseudomonas putida W619 6110997 YP_001748914.1 CDS PputW619_2045 NC_010501.1 2276305 2277372 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit; Rieske (2Fe-2S) domain-containing protein complement(2276305..2277372) Pseudomonas putida W619 6110998 YP_001748915.1 CDS PputW619_2046 NC_010501.1 2277521 2277991 R PFAM: regulatory protein MarR; KEGG: psp:PSPPH_2432 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(2277521..2277991) Pseudomonas putida W619 6110999 YP_001748916.1 CDS PputW619_2047 NC_010501.1 2278190 2279020 D catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 2278190..2279020 Pseudomonas putida W619 6111000 YP_001748917.1 CDS PputW619_2048 NC_010501.1 2279096 2280544 D PFAM: Aldehyde Dehydrogenase_; KEGG: psp:PSPPH_2434 vanillin dehydrogenase; aldehyde dehydrogenase 2279096..2280544 Pseudomonas putida W619 6111001 YP_001748918.1 CDS PputW619_2049 NC_010501.1 2280621 2282504 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 2280621..2282504 Pseudomonas putida W619 6111002 YP_001748919.1 CDS PputW619_2050 NC_010501.1 2282501 2283742 D KEGG: psb:Psyr_2725 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2282501..2283742 Pseudomonas putida W619 6111003 YP_001748920.1 CDS PputW619_2051 NC_010501.1 2283757 2285505 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dac:Daci_2761 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 2283757..2285505 Pseudomonas putida W619 6111004 YP_001748921.1 CDS PputW619_2052 NC_010501.1 2285486 2286496 R PFAM: protein of unknown function DUF323; KEGG: mpt:Mpe_A2681 hypothetical protein; hypothetical protein complement(2285486..2286496) Pseudomonas putida W619 6111005 YP_001748922.1 CDS PputW619_2053 NC_010501.1 2286493 2288163 R PFAM: sulfatase; KEGG: pap:PSPA7_3903 arylsulfatase (AS) (aryl-sulfate sulphohydrolase); sulfatase complement(2286493..2288163) Pseudomonas putida W619 6111006 YP_001748923.1 CDS PputW619_2054 NC_010501.1 2288412 2289803 D KEGG: pap:PSPA7_3902 hypothetical protein; hypothetical protein 2288412..2289803 Pseudomonas putida W619 6111007 YP_001748924.1 CDS PputW619_2055 NC_010501.1 2289840 2291045 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: psb:Psyr_2731 general substrate transporter:major facilitator superfamily; putative 3-hydroxyphenylpropionic transporter MhpT 2289840..2291045 Pseudomonas putida W619 6111008 YP_001748925.1 CDS PputW619_2056 NC_010501.1 2291126 2291635 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: reh:H16_A2722 cytosine/adenosine deaminase; CMP/dCMP deaminase complement(2291126..2291635) Pseudomonas putida W619 6111009 YP_001748926.1 CDS PputW619_2057 NC_010501.1 2291670 2293004 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: pfl:PFL_5746 xanthine/uracil permease family protein; xanthine permease complement(2291670..2293004) Pseudomonas putida W619 6111010 YP_001748927.1 CDS PputW619_2058 NC_010501.1 2293191 2294105 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_2728 transcriptional regulator, LysR family; LysR family transcriptional regulator 2293191..2294105 Pseudomonas putida W619 6111011 YP_001748928.1 CDS PputW619_2059 NC_010501.1 2294204 2294677 D KEGG: pfo:Pfl_2413 hypothetical protein; hypothetical protein 2294204..2294677 Pseudomonas putida W619 6111012 YP_001748929.1 CDS PputW619_2060 NC_010501.1 2294904 2295908 R KEGG: rme:Rmet_3749 hypothetical protein; hypothetical protein complement(2294904..2295908) Pseudomonas putida W619 6111013 YP_001748930.1 CDS PputW619_2061 NC_010501.1 2295911 2296177 R PFAM: protein of unknown function UPF0153; KEGG: bca:BCE_0834 hypothetical protein; hypothetical protein complement(2295911..2296177) Pseudomonas putida W619 6111014 YP_001748931.1 CDS PputW619_2062 NC_010501.1 2296213 2297847 R KEGG: rme:Rmet_3750 hypothetical protein; hypothetical protein complement(2296213..2297847) Pseudomonas putida W619 6111015 YP_001748932.1 CDS PputW619_2063 NC_010501.1 2298060 2298932 R KEGG: psa:PST_0849 predicted transcriptional regulator; transcriptional regulator complement(2298060..2298932) Pseudomonas putida W619 6111016 YP_001748933.1 CDS PputW619_2064 NC_010501.1 2299052 2299309 D hypothetical protein 2299052..2299309 Pseudomonas putida W619 6111017 YP_001748934.1 CDS PputW619_2065 NC_010501.1 2299319 2300308 R PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase; 5'-nucleotidase complement(2299319..2300308) Pseudomonas putida W619 6111018 YP_001748935.1 CDS PputW619_2066 NC_010501.1 2300482 2301492 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 2300482..2301492 Pseudomonas putida W619 6111019 YP_001748936.1 CDS PputW619_2067 NC_010501.1 2301597 2302343 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_0120 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2301597..2302343) Pseudomonas putida W619 6111020 YP_001748937.1 CDS PputW619_2068 NC_010501.1 2302356 2303042 R PFAM: ThiJ/PfpI domain protein; KEGG: aav:Aave_0745 transcriptional regulator, fis family; ThiJ/PfpI domain-containing protein complement(2302356..2303042) Pseudomonas putida W619 6111021 YP_001748938.1 CDS PputW619_2069 NC_010501.1 2303289 2304440 R PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A5231 major facilitator superfamily (MFS_1) transporter; major facilitator transporter complement(2303289..2304440) Pseudomonas putida W619 6111022 YP_001748939.1 CDS PputW619_2070 NC_010501.1 2304495 2306177 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bur:Bcep18194_B2780 amidohydrolase; amidohydrolase 3 complement(2304495..2306177) Pseudomonas putida W619 6111023 YP_001748940.1 CDS PputW619_2071 NC_010501.1 2306310 2306930 D PFAM: regulatory protein TetR; KEGG: mlo:mlr0237 hypothetical protein; TetR family transcriptional regulator 2306310..2306930 Pseudomonas putida W619 6111024 YP_001748941.1 CDS PputW619_2072 NC_010501.1 2306940 2307563 R PFAM: Glutathione S-transferase domain; KEGG: asa:ASA_2515 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(2306940..2307563) Pseudomonas putida W619 6111025 YP_001748942.1 CDS PputW619_2073 NC_010501.1 2308306 2308473 R hypothetical protein complement(2308306..2308473) Pseudomonas putida W619 6111026 YP_001748943.1 CDS PputW619_2074 NC_010501.1 2308602 2310746 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2997 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(2308602..2310746) Pseudomonas putida W619 6111027 YP_001748944.1 CDS PputW619_2075 NC_010501.1 2310963 2312282 D PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2996 Na+/H+ antiporter, NahC family; Na+/H+ antiporter NhaC 2310963..2312282 Pseudomonas putida W619 6111028 YP_001748945.1 CDS PputW619_2076 NC_010501.1 2312287 2313297 R PFAM: FecR protein; KEGG: pen:PSEEN2995 transmembrane sensor, FecR family; anti-FecI sigma factor FecR complement(2312287..2313297) Pseudomonas putida W619 6111029 YP_001748946.1 CDS PputW619_2077 NC_010501.1 2313541 2314014 D PFAM: regulatory protein MarR; KEGG: pen:PSEEN2994 transcriptional regulator, MarR family; MarR family transcriptional regulator 2313541..2314014 Pseudomonas putida W619 6111030 YP_001748947.1 CDS PputW619_2078 NC_010501.1 2314043 2315236 D PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2993 HlyD family secretion protein; secretion protein HlyD family protein 2314043..2315236 Pseudomonas putida W619 6111031 YP_001748948.1 CDS PputW619_2079 NC_010501.1 2315233 2316768 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2992 drug resistance transporter, EmrB/QacA family; EmrB/QacA family drug resistance transporter 2315233..2316768 Pseudomonas putida W619 6111032 YP_001748949.1 CDS PputW619_2080 NC_010501.1 2316864 2317883 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pfo:Pfl_1969 esterase/lipase/thioesterase; alpha/beta hydrolase domain-containing protein complement(2316864..2317883) Pseudomonas putida W619 6111033 YP_001748950.1 CDS PputW619_2081 NC_010501.1 2318030 2318914 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1970 transcriptional regulator, LysR family; LysR family transcriptional regulator 2318030..2318914 Pseudomonas putida W619 6111034 YP_001748951.1 CDS PputW619_2082 NC_010501.1 2318981 2319382 D KEGG: pen:PSEEN3331 hypothetical protein; hypothetical protein 2318981..2319382 Pseudomonas putida W619 6111035 YP_001748952.1 CDS PputW619_2083 NC_010501.1 2319495 2319716 D PFAM: MbtH domain protein; KEGG: pen:PSEEN3329 hypothetical protein; MbtH domain-containing protein 2319495..2319716 Pseudomonas putida W619 6111036 YP_001748953.1 CDS PputW619_2084 NC_010501.1 2319713 2320432 D PFAM: Thioesterase; KEGG: pen:PSEEN3328 thioesterase involved in non-ribosomal peptide biosynthesis; thioesterase 2319713..2320432 Pseudomonas putida W619 6111037 YP_001748954.1 CDS PputW619_2085 NC_010501.1 2320490 2321041 D PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3325 hydrolase, isochorismatase family; isochorismatase hydrolase 2320490..2321041 Pseudomonas putida W619 6111038 YP_001748955.1 CDS PputW619_2086 NC_010501.1 2321068 2322120 D PFAM: protein of unknown function DUF1615; KEGG: pen:PSEEN3324 hypothetical protein; hypothetical protein 2321068..2322120 Pseudomonas putida W619 6111039 YP_001748956.1 CDS PputW619_2087 NC_010501.1 2322179 2323048 R KEGG: pen:PSEEN3242 hypothetical protein; hypothetical protein complement(2322179..2323048) Pseudomonas putida W619 6111040 YP_001748957.1 CDS PputW619_2088 NC_010501.1 2323045 2323944 R PFAM: ABC-3 protein; KEGG: pen:PSEEN3241 cation ABC transporter, permease protein; ABC-3 protein complement(2323045..2323944) Pseudomonas putida W619 6111041 YP_001748958.1 CDS PputW619_2089 NC_010501.1 2323944 2324690 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3240 cation ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2323944..2324690) Pseudomonas putida W619 6111042 YP_001748959.1 CDS PputW619_2090 NC_010501.1 2324687 2325589 R PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN3239 cation ABC transporter, periplasmic cation-binding protein; periplasmic solute binding protein complement(2324687..2325589) Pseudomonas putida W619 6111043 YP_001748960.1 CDS PputW619_2091 NC_010501.1 2325607 2326191 R KEGG: pen:PSEEN3238 hypothetical protein; hypothetical protein complement(2325607..2326191) Pseudomonas putida W619 6111044 YP_001748961.1 CDS PputW619_2092 NC_010501.1 2326188 2326508 R KEGG: pen:PSEEN3237 hypothetical protein; hypothetical protein complement(2326188..2326508) Pseudomonas putida W619 6111045 YP_001748962.1 CDS PputW619_2093 NC_010501.1 2326505 2327044 R KEGG: pen:PSEEN3236 hypothetical protein; hypothetical protein complement(2326505..2327044) Pseudomonas putida W619 6111046 YP_001748963.1 CDS PputW619_2094 NC_010501.1 2327041 2328234 R PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN3235 hypothetical protein; peptidase complement(2327041..2328234) Pseudomonas putida W619 6111047 YP_001748964.1 CDS PputW619_2095 NC_010501.1 2328404 2329738 R KEGG: pen:PSEEN3223 L-ornithine N5-oxygenase PvdA; L-ornithine N5-oxygenase PvdA complement(2328404..2329738) Pseudomonas putida W619 6111048 YP_001748965.1 CDS PputW619_2096 NC_010501.1 2329939 2330370 D KEGG: pen:PSEEN3219 hypothetical protein; hypothetical protein 2329939..2330370 Pseudomonas putida W619 6111049 YP_001748966.1 CDS pbpG NC_010501.1 2330430 2331320 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase complement(2330430..2331320) Pseudomonas putida W619 6111050 YP_001748967.1 CDS PputW619_2098 NC_010501.1 2331600 2331782 R KEGG: pen:PSEEN3216 hypothetical protein; hypothetical protein complement(2331600..2331782) Pseudomonas putida W619 6111051 YP_001748968.1 CDS PputW619_2099 NC_010501.1 2332003 2332824 D catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2332003..2332824 Pseudomonas putida W619 6111052 YP_001748969.1 CDS PputW619_2100 NC_010501.1 2332883 2333125 R KEGG: pen:PSEEN3213 hypothetical protein; hypothetical protein complement(2332883..2333125) Pseudomonas putida W619 6111053 YP_001748970.1 CDS PputW619_2101 NC_010501.1 2333235 2333762 R KEGG: pen:PSEEN3212 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2333235..2333762) Pseudomonas putida W619 6111054 YP_001748971.1 CDS PputW619_2102 NC_010501.1 2333987 2334346 R KEGG: pen:PSEEN3211 transcriptional regulator MvaT, P16 subunit; transcriptional regulator MvaT, P16 subunit complement(2333987..2334346) Pseudomonas putida W619 6111055 YP_001748972.1 CDS PputW619_2103 NC_010501.1 2334690 2335991 D PFAM: outer membrane porin; KEGG: pen:PSEEN3209 OprD-like porin; outer membrane porin 2334690..2335991 Pseudomonas putida W619 6111056 YP_001748973.1 CDS PputW619_2104 NC_010501.1 2336057 2336812 D catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 2336057..2336812 Pseudomonas putida W619 6111057 YP_001748974.1 CDS PputW619_2105 NC_010501.1 2336857 2337207 R PFAM: response regulator receiver; KEGG: pen:PSEEN3207 response regulator; response regulator receiver protein complement(2336857..2337207) Pseudomonas putida W619 6111058 YP_001748975.1 CDS PputW619_2106 NC_010501.1 2337457 2340924 D PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; KEGG: pen:PSEEN3205 sensor histidine kinase/response regulator (hybrid); multi-sensor hybrid histidine kinase 2337457..2340924 Pseudomonas putida W619 6111059 YP_001748976.1 CDS PputW619_2107 NC_010501.1 2340921 2341742 D PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3204 chemotaxis protein methyltransferase, CheR-like; CheR-type MCP methyltransferase 2340921..2341742 Pseudomonas putida W619 6111060 YP_001748977.1 CDS PputW619_2108 NC_010501.1 2341739 2342314 D PFAM: CheB methylesterase; KEGG: pen:PSEEN3203 methylesterase, CheB-like; CheB methylesterase 2341739..2342314 Pseudomonas putida W619 6111061 YP_001748978.1 CDS PputW619_2109 NC_010501.1 2342308 2343534 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3202 response regulator/sensor histidine kinase (hybrid); response regulator receiver sensor signal transduction histidine kinase 2342308..2343534 Pseudomonas putida W619 6111062 YP_001748979.1 CDS PputW619_2110 NC_010501.1 2343582 2343959 D PFAM: response regulator receiver; KEGG: pen:PSEEN3201 response regulator; response regulator receiver protein 2343582..2343959 Pseudomonas putida W619 6111063 YP_001748980.1 CDS PputW619_2111 NC_010501.1 2344086 2345060 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2344086..2345060 Pseudomonas putida W619 6111064 YP_001748981.1 CDS PputW619_2112 NC_010501.1 2345152 2346654 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: stm:STM4290 proline/glycine betaine transporter; proline/glycine betaine transporter 2345152..2346654 Pseudomonas putida W619 6111065 YP_001748982.1 CDS PputW619_2113 NC_010501.1 2346688 2347578 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3287 transcriptional regulator, LysR family; LysR family transcriptional regulator 2346688..2347578 Pseudomonas putida W619 6111066 YP_001748983.1 CDS PputW619_2114 NC_010501.1 2347693 2348397 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN3288 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2347693..2348397 Pseudomonas putida W619 6111067 YP_001748984.1 CDS PputW619_2115 NC_010501.1 2348398 2349015 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2348398..2349015) Pseudomonas putida W619 6111068 YP_001748985.1 CDS PputW619_2116 NC_010501.1 2349136 2351202 R TIGRFAM: trehalose synthase; KEGG: psa:PST_0034 trehalose synthase; trehalose synthase complement(2349136..2351202) Pseudomonas putida W619 6111069 YP_001748986.1 CDS PputW619_2117 NC_010501.1 2351291 2352208 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psp:PSPPH_2444 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2351291..2352208) Pseudomonas putida W619 6111070 YP_001748987.1 CDS PputW619_2118 NC_010501.1 2352328 2353086 D PFAM: LamB/YcsF family protein; KEGG: pfl:PFL_4551 hypothetical protein; hypothetical protein 2352328..2353086 Pseudomonas putida W619 6111071 YP_001748988.1 CDS PputW619_2119 NC_010501.1 2353178 2354065 D PFAM: Allophanate hydrolase subunit 1; KEGG: psb:Psyr_2721 protein of unknown function DUF213; allophanate hydrolase subunit 1 2353178..2354065 Pseudomonas putida W619 6111072 YP_001748989.1 CDS PputW619_2120 NC_010501.1 2354062 2355033 D KEGG: pfl:PFL_4547 UreA amidolyase-related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 2354062..2355033 Pseudomonas putida W619 6111073 YP_001748990.1 CDS PputW619_2121 NC_010501.1 2355108 2357276 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:Pfl_2462 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(2355108..2357276) Pseudomonas putida W619 6111074 YP_001748991.1 CDS PputW619_2122 NC_010501.1 2357442 2358278 R KEGG: pen:PSEEN2355 hypothetical protein; hypothetical protein complement(2357442..2358278) Pseudomonas putida W619 6111075 YP_001748992.1 CDS PputW619_2123 NC_010501.1 2358275 2359495 R PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2356 hypothetical protein; radical SAM domain-containing protein complement(2358275..2359495) Pseudomonas putida W619 6111076 YP_001748993.1 CDS PputW619_2124 NC_010501.1 2359727 2360773 D PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2364 hypothetical protein; type 11 methyltransferase 2359727..2360773 Pseudomonas putida W619 6111077 YP_001748994.1 CDS PputW619_2125 NC_010501.1 2360993 2362192 R PFAM: Saccharopine dehydrogenase; KEGG: pen:PSEEN2365 hypothetical protein; saccharopine dehydrogenase complement(2360993..2362192) Pseudomonas putida W619 6111078 YP_001748995.1 CDS PputW619_2126 NC_010501.1 2362270 2363367 R TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN2366 carboxynorspermidine decarboxylase NspC; carboxynorspermidine decarboxylase complement(2362270..2363367) Pseudomonas putida W619 6111079 YP_001748996.1 CDS PputW619_2127 NC_010501.1 2363604 2364062 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: psp:PSPPH_2817 phosphoesterase, putative; phosphodiesterase 2363604..2364062 Pseudomonas putida W619 6111080 YP_001748997.1 CDS PputW619_2128 NC_010501.1 2364114 2365031 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN2008 L-serine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta complement(2364114..2365031) Pseudomonas putida W619 6111081 YP_001748998.1 CDS PputW619_2129 NC_010501.1 2365121 2366347 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2622 transporter, MFS family; major facilitator transporter complement(2365121..2366347) Pseudomonas putida W619 6111082 YP_001748999.1 CDS PputW619_2130 NC_010501.1 2366677 2366928 D hypothetical protein 2366677..2366928 Pseudomonas putida W619 6111083 YP_001749000.1 CDS PputW619_2131 NC_010501.1 2367038 2367304 R hypothetical protein complement(2367038..2367304) Pseudomonas putida W619 6111084 YP_001749001.1 CDS PputW619_2132 NC_010501.1 2367446 2368189 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: pfl:PFL_4066 transcriptional regulator-related protein; Crp/FNR family transcriptional regulator complement(2367446..2368189) Pseudomonas putida W619 6111085 YP_001749002.1 CDS PputW619_2133 NC_010501.1 2368233 2376878 R PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: pfl:PFL_4065 cyclic beta 1-2 glucan synthetase, putative; glycosyltransferase complement(2368233..2376878) Pseudomonas putida W619 6111086 YP_001749003.1 CDS PputW619_2134 NC_010501.1 2377086 2377724 D PFAM: regulatory protein TetR; KEGG: bxe:Bxe_B0653 transcriptional regulator, TetR family; TetR family transcriptional regulator 2377086..2377724 Pseudomonas putida W619 6111087 YP_001749004.1 CDS PputW619_2135 NC_010501.1 2377741 2381304 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; cytochrome c class I; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: spe:Spro_2315 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(2377741..2381304) Pseudomonas putida W619 6111088 YP_001749005.1 CDS PputW619_2136 NC_010501.1 2381320 2381787 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pap:PSPA7_3672 probable oxidoreductase; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2381320..2381787) Pseudomonas putida W619 6111089 YP_001749006.1 CDS PputW619_2137 NC_010501.1 2381956 2382432 R PFAM: regulatory protein MarR; KEGG: azc:AZC_2473 transcriptional regulator; MarR family transcriptional regulator complement(2381956..2382432) Pseudomonas putida W619 6111090 YP_001749007.1 CDS PputW619_2138 NC_010501.1 2382501 2383553 R KEGG: spe:Spro_2312 hypothetical protein; hypothetical protein complement(2382501..2383553) Pseudomonas putida W619 6111091 YP_001749008.1 CDS PputW619_2139 NC_010501.1 2383577 2383702 D hypothetical protein 2383577..2383702 Pseudomonas putida W619 6111092 YP_001749009.1 CDS PputW619_2140 NC_010501.1 2383881 2385029 D PFAM: monooxygenase FAD-binding; KEGG: spe:Spro_2311 monooxygenase FAD-binding; monooxygenase FAD-binding 2383881..2385029 Pseudomonas putida W619 6111093 YP_001749010.1 CDS PputW619_2141 NC_010501.1 2385026 2385832 D PFAM: alpha/beta hydrolase fold; KEGG: spe:Spro_2310 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2385026..2385832 Pseudomonas putida W619 6111094 YP_001749011.1 CDS PputW619_2142 NC_010501.1 2385846 2386598 D PFAM: Asp/Glu/hydantoin racemase; KEGG: spe:Spro_2309 Asp/Glu racemase; Asp/Glu/hydantoin racemase 2385846..2386598 Pseudomonas putida W619 6111095 YP_001749012.1 CDS PputW619_2143 NC_010501.1 2386613 2387254 D PFAM: isochorismatase hydrolase; KEGG: spe:Spro_2308 N-carbamoylsarcosine amidase; isochorismatase hydrolase 2386613..2387254 Pseudomonas putida W619 6111096 YP_001749013.1 CDS PputW619_2144 NC_010501.1 2387464 2388777 D PFAM: major facilitator superfamily MFS_1; KEGG: spe:Spro_2307 major facilitator superfamily MFS_1; major facilitator transporter 2387464..2388777 Pseudomonas putida W619 6111097 YP_001749014.1 CDS PputW619_2145 NC_010501.1 2388915 2390210 D PFAM: outer membrane porin; KEGG: psa:PST_1676 benzoate-specific porin; outer membrane porin 2388915..2390210 Pseudomonas putida W619 6111098 YP_001749015.1 CDS PputW619_2146 NC_010501.1 2390223 2391935 R proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase complement(2390223..2391935) Pseudomonas putida W619 6111099 YP_001749016.1 CDS PputW619_2147 NC_010501.1 2392121 2392897 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pfl:PFL_5393 transcriptional regulator, IclR family; IclR family transcriptional regulator 2392121..2392897 Pseudomonas putida W619 6111100 YP_001749017.1 CDS PputW619_2148 NC_010501.1 2393063 2394115 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pfl:PFL_5392 oxidoreductase, putative; oxidoreductase domain-containing protein 2393063..2394115 Pseudomonas putida W619 6111101 YP_001749018.1 CDS PputW619_2149 NC_010501.1 2394167 2394982 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pfl:PFL_5391 hypothetical protein; xylose isomerase domain-containing protein 2394167..2394982 Pseudomonas putida W619 6111102 YP_001749019.1 CDS PputW619_2150 NC_010501.1 2395076 2396767 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00384 hypothetical protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(2395076..2396767) Pseudomonas putida W619 6111103 YP_001749020.1 CDS PputW619_2151 NC_010501.1 2396789 2397097 R PFAM: NIPSNAP family containing protein; KEGG: kpn:KPN_00385 NIPSNAP; NIPSNAP family protein complement(2396789..2397097) Pseudomonas putida W619 6111104 YP_001749021.1 CDS PputW619_2152 NC_010501.1 2397094 2398827 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: kpn:KPN_00386 putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(2397094..2398827) Pseudomonas putida W619 6111105 YP_001749022.1 CDS PputW619_2153 NC_010501.1 2398832 2399641 R PFAM: UBA/THIF-type NAD/FAD binding protein; Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: bxe:Bxe_C0879 shikimate 5-dehydrogenase; shikimate dehydrogenase complement(2398832..2399641) Pseudomonas putida W619 6111106 YP_001749023.1 CDS PputW619_2154 NC_010501.1 2399818 2400588 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpn:KPN_00388 bacterial regulatory proteins, IclR; IclR family transcriptional regulator 2399818..2400588 Pseudomonas putida W619 6111107 YP_001749024.1 CDS PputW619_2155 NC_010501.1 2400640 2400855 R PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_4733 hypothetical protein; hypothetical protein complement(2400640..2400855) Pseudomonas putida W619 6111108 YP_001749025.1 CDS PputW619_2156 NC_010501.1 2401070 2401249 R PFAM: CsbD family protein; KEGG: pfo:Pfl_4351 CsbD-like; CsbD family protein complement(2401070..2401249) Pseudomonas putida W619 6111109 YP_001749026.1 CDS PputW619_2157 NC_010501.1 2401323 2402309 R KEGG: spe:Spro_2442 hypothetical protein; hypothetical protein complement(2401323..2402309) Pseudomonas putida W619 6111110 YP_001749027.1 CDS PputW619_2158 NC_010501.1 2402505 2403980 D KEGG: pfl:PFL_2568 sensory box transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator 2402505..2403980 Pseudomonas putida W619 6111111 YP_001749028.1 CDS PputW619_2159 NC_010501.1 2404076 2404324 R KEGG: pfl:PFL_2569 hypothetical protein; hypothetical protein complement(2404076..2404324) Pseudomonas putida W619 6111112 YP_001749029.1 CDS PputW619_2160 NC_010501.1 2404463 2406004 D PFAM: gamma-glutamyltranspeptidase; KEGG: pmy:Pmen_3832 gamma-glutamyltransferase; gamma-glutamyltransferase 2404463..2406004 Pseudomonas putida W619 6111113 YP_001749030.1 CDS PputW619_2161 NC_010501.1 2406079 2406774 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pmy:Pmen_3833 transcriptional regulator, GntR family; GntR family transcriptional regulator 2406079..2406774 Pseudomonas putida W619 6111114 YP_001749031.1 CDS PputW619_2162 NC_010501.1 2406743 2407990 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pmy:Pmen_3834 amidohydrolase 3; amidohydrolase 3 complement(2406743..2407990) Pseudomonas putida W619 6111115 YP_001749032.1 CDS PputW619_2163 NC_010501.1 2407987 2410473 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pmy:Pmen_3835 ABC transporter related; ABC transporter-like protein complement(2407987..2410473) Pseudomonas putida W619 6111116 YP_001749033.1 CDS PputW619_2164 NC_010501.1 2410470 2411339 R PFAM: inner-membrane translocator; KEGG: pmy:Pmen_3836 inner-membrane translocator; inner-membrane translocator complement(2410470..2411339) Pseudomonas putida W619 6111117 YP_001749034.1 CDS PputW619_2165 NC_010501.1 2411355 2412527 R PFAM: Extracellular ligand-binding receptor; KEGG: pmy:Pmen_3837 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2411355..2412527) Pseudomonas putida W619 6111118 YP_001749035.1 CDS PputW619_2166 NC_010501.1 2412712 2413110 D KEGG: pmy:Pmen_3838 hypothetical protein; hypothetical protein 2412712..2413110 Pseudomonas putida W619 6111119 YP_001749036.1 CDS PputW619_2167 NC_010501.1 2413315 2413599 D KEGG: pfo:Pfl_3702 hypothetical protein; hypothetical protein 2413315..2413599 Pseudomonas putida W619 6111120 YP_001749037.1 CDS PputW619_2168 NC_010501.1 2413634 2415394 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pap:PSPA7_4152 hypothetical protein; peptidase S8/S53 subtilisin kexin sedolisin complement(2413634..2415394) Pseudomonas putida W619 6111121 YP_001749038.1 CDS PputW619_2169 NC_010501.1 2415398 2417251 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2245 ABC transporter, transmembrane region; ABC transporter-like protein complement(2415398..2417251) Pseudomonas putida W619 6111122 YP_001749039.1 CDS PputW619_2170 NC_010501.1 2417697 2418077 D KEGG: pfo:Pfl_4134 hypothetical protein; hypothetical protein 2417697..2418077 Pseudomonas putida W619 6111123 YP_001749040.1 CDS PputW619_2171 NC_010501.1 2418102 2419226 R PFAM: MscS Mechanosensitive ion channel; KEGG: psb:Psyr_1822 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(2418102..2419226) Pseudomonas putida W619 6111124 YP_001749041.1 CDS PputW619_2172 NC_010501.1 2419426 2421558 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Mannitol dehydrogenase domain; KEGG: mfa:Mfla_1729 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase complement(2419426..2421558) Pseudomonas putida W619 6111125 YP_001749042.1 CDS PputW619_2173 NC_010501.1 2421957 2424194 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: psb:Psyr_3141 type II and III secretion system protein:NolW-like; general secretion pathway protein D complement(2421957..2424194) Pseudomonas putida W619 6111126 YP_001749043.1 CDS PputW619_2174 NC_010501.1 2424191 2424700 R KEGG: psp:PSPPH_3055 general secretion pathway protein GspN, putative; general secretion pathway protein GspN complement(2424191..2424700) Pseudomonas putida W619 6111127 YP_001749044.1 CDS PputW619_2175 NC_010501.1 2424697 2425308 R KEGG: psp:PSPPH_3056 general secretion pathway protein GspM, putative; general secretion pathway protein GspM complement(2424697..2425308) Pseudomonas putida W619 6111128 YP_001749045.1 CDS PputW619_2176 NC_010501.1 2425292 2426332 R PFAM: Fimbrial assembly family protein; KEGG: pst:PSPTO_3310 general secretion pathway protein L, putative; fimbrial assembly family protein complement(2425292..2426332) Pseudomonas putida W619 6111129 YP_001749046.1 CDS PputW619_2177 NC_010501.1 2426329 2427042 R KEGG: psp:PSPPH_3058 general secretion pathway protein GspK; general secretion pathway protein GspK complement(2426329..2427042) Pseudomonas putida W619 6111130 YP_001749047.1 CDS PputW619_2178 NC_010501.1 2427039 2427644 R KEGG: pst:PSPTO_3312 general secretion pathway protein J, putative; general secretion pathway protein J complement(2427039..2427644) Pseudomonas putida W619 6111131 YP_001749048.1 CDS PputW619_2179 NC_010501.1 2427641 2428003 R KEGG: psp:PSPPH_3060 general secretion pathway protein GspI; general secretion pathway protein GspI complement(2427641..2428003) Pseudomonas putida W619 6111132 YP_001749049.1 CDS PputW619_2180 NC_010501.1 2428000 2428440 R TIGRFAM: general secretion pathway protein H; KEGG: psb:Psyr_3148 general secretion pathway protein H; general secretion pathway protein H complement(2428000..2428440) Pseudomonas putida W619 6111133 YP_001749050.1 CDS PputW619_2181 NC_010501.1 2428443 2428865 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pst:PSPTO_3315 general secretion pathway protein G; general secretion pathway protein G complement(2428443..2428865) Pseudomonas putida W619 6111134 YP_001749051.1 CDS PputW619_2182 NC_010501.1 2428876 2430075 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: psb:Psyr_3150 type II secretion system protein; general secretion pathway protein F complement(2428876..2430075) Pseudomonas putida W619 6111135 YP_001749052.1 CDS PputW619_2183 NC_010501.1 2430077 2431768 R TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pst:PSPTO_3317 general secretion pathway protein E; general secretory pathway protein E complement(2430077..2431768) Pseudomonas putida W619 6111136 YP_001749053.1 CDS PputW619_2184 NC_010501.1 2432251 2432493 D hypothetical protein 2432251..2432493 Pseudomonas putida W619 6111137 YP_001749054.1 CDS PputW619_2185 NC_010501.1 2432570 2435224 D PFAM: glycoside hydrolase family 3 domain protein; PA14 domain protein; KEGG: psb:Psyr_3035 glycoside hydrolase, family 3, N-terminal:glycoside hydrolase, family 3, C-terminal:glycoside hydrolase, family 3, C-terminal; beta-glucosidase 2432570..2435224 Pseudomonas putida W619 6111138 YP_001749055.1 CDS PputW619_2186 NC_010501.1 2435233 2435877 R PFAM: regulatory protein TetR; KEGG: psb:Psyr_3036 regulatory protein, TetR; TetR family transcriptional regulator complement(2435233..2435877) Pseudomonas putida W619 6111139 YP_001749056.1 CDS PputW619_2187 NC_010501.1 2435950 2437290 R PFAM: multi antimicrobial extrusion protein MatE; KEGG: pst:PSPTO_3172 hypothetical protein; multi anti extrusion protein MatE complement(2435950..2437290) Pseudomonas putida W619 6111140 YP_001749057.1 CDS PputW619_2188 NC_010501.1 2437429 2437896 R PFAM: DoxX family protein; KEGG: pen:PSEEN3277 hypothetical protein; DoxX family protein complement(2437429..2437896) Pseudomonas putida W619 6111141 YP_001749058.1 CDS PputW619_2189 NC_010501.1 2437907 2438662 R KEGG: pen:PSEEN3276 hypothetical protein; hypothetical protein complement(2437907..2438662) Pseudomonas putida W619 6111142 YP_001749059.1 CDS PputW619_2190 NC_010501.1 2438659 2439492 R PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3275 hypothetical protein; hypothetical protein complement(2438659..2439492) Pseudomonas putida W619 6111143 YP_001749060.1 CDS PputW619_2191 NC_010501.1 2439509 2439787 R KEGG: pen:PSEEN3274 hypothetical protein; hypothetical protein complement(2439509..2439787) Pseudomonas putida W619 6111144 YP_001749061.1 CDS PputW619_2192 NC_010501.1 2439986 2440570 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2439986..2440570 Pseudomonas putida W619 6111145 YP_001749062.1 CDS PputW619_2193 NC_010501.1 2440560 2441201 D PFAM: protein of unknown function DUF1109; KEGG: pen:PSEEN3271 hypothetical protein; hypothetical protein 2440560..2441201 Pseudomonas putida W619 6111146 YP_001749063.1 CDS PputW619_2194 NC_010501.1 2441239 2441820 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN3199 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2441239..2441820) Pseudomonas putida W619 6111147 YP_001749064.1 CDS PputW619_2195 NC_010501.1 2441833 2442681 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pen:PSEEN3198 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase complement(2441833..2442681) Pseudomonas putida W619 6111148 YP_001749065.1 CDS PputW619_2196 NC_010501.1 2442695 2443879 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(2442695..2443879) Pseudomonas putida W619 6111149 YP_001749066.1 CDS PputW619_2197 NC_010501.1 2444048 2445058 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3196 transcriptional regulator, AraC family; AraC family transcriptional regulator 2444048..2445058 Pseudomonas putida W619 6111150 YP_001749067.1 CDS PputW619_2198 NC_010501.1 2445359 2445697 R KEGG: pen:PSEEN3191 hypothetical protein; hypothetical protein complement(2445359..2445697) Pseudomonas putida W619 6111151 YP_001749068.1 CDS PputW619_2199 NC_010501.1 2445891 2446292 R PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN3189 hypothetical protein; hypothetical protein complement(2445891..2446292) Pseudomonas putida W619 6111152 YP_001749069.1 CDS glcF NC_010501.1 2446285 2447520 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN3188 glycolate oxidase subunit, FeS protein; glycolate oxidase iron-sulfur subunit complement(2446285..2447520) Pseudomonas putida W619 6111153 YP_001749070.1 CDS glcE NC_010501.1 2447530 2448582 R PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3187 glycolate oxidase, subunit GlcE; glycolate oxidase FAD binding subunit complement(2447530..2448582) Pseudomonas putida W619 6111154 YP_001749071.1 CDS PputW619_2202 NC_010501.1 2448582 2450081 R TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: pen:PSEEN3186 glycolate oxidase, FAD-linked subunit; glycolate oxidase subunit GlcD complement(2448582..2450081) Pseudomonas putida W619 6111155 YP_001749072.1 CDS PputW619_2203 NC_010501.1 2450277 2451044 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psa:PST_0430 transcriptional regulator GlcC; DNA-binding transcriptional regulator GlcC 2450277..2451044 Pseudomonas putida W619 6111156 YP_001749073.1 CDS PputW619_2204 NC_010501.1 2451101 2452333 R catalyzes the release of C-terminal glutamate residues from N-acylating moieties; glutamate carboxypeptidase complement(2451101..2452333) Pseudomonas putida W619 6111157 YP_001749074.1 CDS PputW619_2205 NC_010501.1 2452456 2452773 R TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2379 hypothetical protein; hypothetical protein complement(2452456..2452773) Pseudomonas putida W619 6111158 YP_001749075.1 CDS PputW619_2206 NC_010501.1 2452900 2453421 R PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_0733 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(2452900..2453421) Pseudomonas putida W619 6111159 YP_001749076.1 CDS PputW619_2207 NC_010501.1 2453568 2454197 D PFAM: Glutathione S-transferase domain; KEGG: rle:RL1348 putative glutathione-S-transferase protein; glutathione S-transferase domain-containing protein 2453568..2454197 Pseudomonas putida W619 6111160 YP_001749077.1 CDS codB NC_010501.1 2454439 2455704 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bte:BTH_II1641 cytosine permease; cytosine permease 2454439..2455704 Pseudomonas putida W619 6111161 YP_001749078.1 CDS PputW619_2209 NC_010501.1 2455701 2456918 D PFAM: purine catabolism PurC domain protein; KEGG: bte:BTH_II1640 DNA-binding protein; PucR family transcriptional regulator 2455701..2456918 Pseudomonas putida W619 6111162 YP_001749079.1 CDS PputW619_2210 NC_010501.1 2456923 2458164 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: psa:PST_3570 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 2456923..2458164 Pseudomonas putida W619 6111163 YP_001749080.1 CDS PputW619_2211 NC_010501.1 2458263 2458997 D KEGG: pen:PSEEN2128 hypothetical protein; hypothetical protein 2458263..2458997 Pseudomonas putida W619 6111164 YP_001749081.1 CDS PputW619_2212 NC_010501.1 2459014 2459556 R KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein complement(2459014..2459556) Pseudomonas putida W619 6111165 YP_001749082.1 CDS PputW619_2213 NC_010501.1 2459839 2461263 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN2394 transcriptional regulator, GntR family; transcriptional regulator complement(2459839..2461263) Pseudomonas putida W619 6111166 YP_001749083.1 CDS PputW619_2214 NC_010501.1 2461589 2462998 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN2395 gamma-aminobutyrate permease GabP-like; amino acid permease-associated protein 2461589..2462998 Pseudomonas putida W619 6111167 YP_001749084.1 CDS PputW619_2215 NC_010501.1 2463002 2463181 R hypothetical protein complement(2463002..2463181) Pseudomonas putida W619 6111168 YP_001749085.1 CDS PputW619_2216 NC_010501.1 2463285 2464061 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2396 trans-aconitate methyltransferase; trans-aconitate 2-methyltransferase 2463285..2464061 Pseudomonas putida W619 6111169 YP_001749086.1 CDS PputW619_2217 NC_010501.1 2464051 2464461 R KEGG: pen:PSEEN2397 hypothetical protein; hypothetical protein complement(2464051..2464461) Pseudomonas putida W619 6111170 YP_001749087.1 CDS PputW619_2218 NC_010501.1 2464527 2465396 R TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2399 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2464527..2465396) Pseudomonas putida W619 6111171 YP_001749088.1 CDS PputW619_2219 NC_010501.1 2465637 2466953 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2400 sugar MFS transporter; major facilitator transporter 2465637..2466953 Pseudomonas putida W619 6111172 YP_001749089.1 CDS PputW619_2220 NC_010501.1 2466968 2468359 D TIGRFAM: aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2401 hypothetical protein; aminophosphonate oxidoreductase 2466968..2468359 Pseudomonas putida W619 6111173 YP_001749090.1 CDS PputW619_2221 NC_010501.1 2468455 2469165 D PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN2368 hypothetical protein; hypothetical protein 2468455..2469165 Pseudomonas putida W619 6111174 YP_001749091.1 CDS PputW619_2222 NC_010501.1 2469302 2470246 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2369 transcriptional regulator, LysR family; LysR family transcriptional regulator 2469302..2470246 Pseudomonas putida W619 6111175 YP_001749092.1 CDS PputW619_2223 NC_010501.1 2470448 2471860 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; Pyridoxal-dependent decarboxylase; KEGG: pen:PSEEN2370 tyrosine decarboxylase; aromatic-L-amino-acid decarboxylase 2470448..2471860 Pseudomonas putida W619 6111176 YP_001749093.1 CDS PputW619_2224 NC_010501.1 2471896 2473269 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN2013 major facilitator family transporter; major facilitator transporter complement(2471896..2473269) Pseudomonas putida W619 6111177 YP_001749094.1 CDS PputW619_2225 NC_010501.1 2473763 2475670 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; Xylose isomerase domain protein TIM barrel; KEGG: pen:PSEEN2014 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2473763..2475670 Pseudomonas putida W619 6111178 YP_001749095.1 CDS PputW619_2226 NC_010501.1 2475843 2476514 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN2015 transcriptional regulator, TetR family; TetR family transcriptional regulator 2475843..2476514 Pseudomonas putida W619 6111179 YP_001749096.1 CDS PputW619_2227 NC_010501.1 2476522 2477529 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2335 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2476522..2477529) Pseudomonas putida W619 6111180 YP_001749097.1 CDS PputW619_2228 NC_010501.1 2477669 2478148 D KEGG: pen:PSEEN2336 hypothetical protein; hypothetical protein 2477669..2478148 Pseudomonas putida W619 6111181 YP_001749098.1 CDS PputW619_2229 NC_010501.1 2478202 2478414 D KEGG: pen:PSEEN2759 hypothetical protein; hypothetical protein 2478202..2478414 Pseudomonas putida W619 6111182 YP_001749099.1 CDS PputW619_2230 NC_010501.1 2478536 2479030 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2309 hypothetical protein; N-acetyltransferase GCN5 2478536..2479030 Pseudomonas putida W619 6111183 YP_001749100.1 CDS PputW619_2231 NC_010501.1 2479167 2481266 D KEGG: pen:PSEEN2310 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2479167..2481266 Pseudomonas putida W619 6111184 YP_001749101.1 CDS PputW619_2232 NC_010501.1 2481293 2482117 R PFAM: aldo/keto reductase; KEGG: pfl:PFL_5394 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(2481293..2482117) Pseudomonas putida W619 6111185 YP_001749102.1 CDS PputW619_2233 NC_010501.1 2482346 2483224 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN2407 hypothetical protein; hypothetical protein 2482346..2483224 Pseudomonas putida W619 6111186 YP_001749103.1 CDS PputW619_2234 NC_010501.1 2483243 2484145 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1962 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2483243..2484145) Pseudomonas putida W619 6111187 YP_001749104.1 CDS PputW619_2235 NC_010501.1 2484527 2486785 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pen:PSEEN2372 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI 2484527..2486785 Pseudomonas putida W619 6111188 YP_001749105.1 CDS PputW619_2236 NC_010501.1 2487024 2488235 D PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; creatinase 2487024..2488235 Pseudomonas putida W619 6111189 YP_001749106.1 CDS PputW619_2237 NC_010501.1 2488350 2489684 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pde:Pden_1693 major facilitator superfamily MFS_1; general substrate transporter 2488350..2489684 Pseudomonas putida W619 6111190 YP_001749107.1 CDS PputW619_2238 NC_010501.1 2489689 2490681 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pmy:Pmen_0490 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2489689..2490681) Pseudomonas putida W619 6111191 YP_001749108.1 CDS pssA NC_010501.1 2490838 2492166 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2490838..2492166 Pseudomonas putida W619 6111192 YP_001749109.1 CDS PputW619_2240 NC_010501.1 2492249 2493415 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pfo:Pfl_2170 putative diguanylate cyclase (GGDEF domain); diguanylate cyclase 2492249..2493415 Pseudomonas putida W619 6111193 YP_001749110.1 CDS PputW619_2241 NC_010501.1 2493519 2494892 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN2055 decarboxylase; hypothetical protein complement(2493519..2494892) Pseudomonas putida W619 6111194 YP_001749111.1 CDS PputW619_2242 NC_010501.1 2494943 2496004 R PFAM: conserved hypothetical protein; KEGG: bxe:Bxe_A1977 conserved hypothetical protein 698; hypothetical protein complement(2494943..2496004) Pseudomonas putida W619 6111195 YP_001749112.1 CDS PputW619_2243 NC_010501.1 2496115 2496984 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A1978 transcriptional regulator, LysR family; LysR family transcriptional regulator 2496115..2496984 Pseudomonas putida W619 6111196 YP_001749113.1 CDS PputW619_2244 NC_010501.1 2497110 2497400 R KEGG: ncr:NCU07949.1 hypothetical protein; hypothetical protein complement(2497110..2497400) Pseudomonas putida W619 6111197 YP_001749114.1 CDS PputW619_2245 NC_010501.1 2497581 2498780 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2497581..2498780) Pseudomonas putida W619 6111198 YP_001749115.1 CDS PputW619_2246 NC_010501.1 2498777 2499427 R KEGG: pen:PSEEN2059 nicotinamidase; nicotinamidase complement(2498777..2499427) Pseudomonas putida W619 6111199 YP_001749116.1 CDS PputW619_2247 NC_010501.1 2499566 2500270 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2060 hypothetical protein; NUDIX hydrolase 2499566..2500270 Pseudomonas putida W619 6111200 YP_001749117.1 CDS PputW619_2248 NC_010501.1 2500509 2501921 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3342 transporter, NCS1 family; cytosine/purines uracil thiamine allantoin permease complement(2500509..2501921) Pseudomonas putida W619 6111201 YP_001749118.1 CDS PputW619_2249 NC_010501.1 2502209 2502661 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3341 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2502209..2502661) Pseudomonas putida W619 6111202 YP_001749119.1 CDS PputW619_2250 NC_010501.1 2502771 2503385 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3340 transporter, LysE family; lysine exporter protein LysE/YggA 2502771..2503385 Pseudomonas putida W619 6111203 YP_001749120.1 CDS PputW619_2251 NC_010501.1 2503503 2505668 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pen:PSEEN2026 sensor histidine kinase/response regulator hybrid; PAS/PAC sensor hybrid histidine kinase 2503503..2505668 Pseudomonas putida W619 6111204 YP_001749121.1 CDS PputW619_2252 NC_010501.1 2505675 2507873 R PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2027 sensor histidine kinase/response regulator hybrid; GAF sensor hybrid histidine kinase complement(2505675..2507873) Pseudomonas putida W619 6111205 YP_001749122.1 CDS PputW619_2253 NC_010501.1 2507964 2508527 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2028 hydrolase, MutT/NUDIX family; NUDIX hydrolase complement(2507964..2508527) Pseudomonas putida W619 6111206 YP_001749123.1 CDS PputW619_2254 NC_010501.1 2508530 2509294 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2029 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2508530..2509294) Pseudomonas putida W619 6111207 YP_001749124.1 CDS PputW619_2255 NC_010501.1 2509383 2509772 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN2030 gamma-carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase complement(2509383..2509772) Pseudomonas putida W619 6111208 YP_001749125.1 CDS PputW619_2256 NC_010501.1 2509910 2510395 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2031 oxidoreductase; flavin reductase domain-containing protein complement(2509910..2510395) Pseudomonas putida W619 6111209 YP_001749126.1 CDS PputW619_2257 NC_010501.1 2510409 2511890 R PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2032 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2510409..2511890) Pseudomonas putida W619 6111210 YP_001749127.1 CDS PputW619_2258 NC_010501.1 2511887 2512720 R PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: pen:PSEEN2033 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(2511887..2512720) Pseudomonas putida W619 6111211 YP_001749128.1 CDS PputW619_2259 NC_010501.1 2512789 2513385 R PFAM: protein of unknown function DUF1185; KEGG: pen:PSEEN2034 hypothetical protein; hypothetical protein complement(2512789..2513385) Pseudomonas putida W619 6111212 YP_001749129.1 CDS PputW619_2260 NC_010501.1 2513631 2514674 R PFAM: luciferase family protein; KEGG: pen:PSEEN2035 monooxygenase, bacterial luciferase family; luciferase family protein complement(2513631..2514674) Pseudomonas putida W619 6111213 YP_001749130.1 CDS PputW619_2261 NC_010501.1 2514741 2515226 R PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN2036 oxidoreductase; flavin reductase domain-containing protein complement(2514741..2515226) Pseudomonas putida W619 6111214 YP_001749131.1 CDS PputW619_2262 NC_010501.1 2515543 2516946 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN2038 permease, cytosine/purines, uracil, thiamine, allantoin permease family; cytosine/purines uracil thiamine allantoin permease 2515543..2516946 Pseudomonas putida W619 6111215 YP_001749132.1 CDS PputW619_2263 NC_010501.1 2517041 2518666 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN2039 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(2517041..2518666) Pseudomonas putida W619 6111216 YP_001749133.1 CDS PputW619_2264 NC_010501.1 2518891 2520090 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_2119 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2518891..2520090) Pseudomonas putida W619 6111217 YP_001749134.1 CDS PputW619_2265 NC_010501.1 2520458 2523016 R hypothetical protein complement(2520458..2523016) Pseudomonas putida W619 6111218 YP_001749135.1 CDS PputW619_2266 NC_010501.1 2522997 2523944 R KEGG: bur:Bcep18194_C6544 hypothetical protein; hypothetical protein complement(2522997..2523944) Pseudomonas putida W619 6111219 YP_001749136.1 CDS PputW619_2267 NC_010501.1 2524038 2525918 R PFAM: Integrase catalytic region; KEGG: mms:mma_0807 hypothetical protein; integrase catalytic region complement(2524038..2525918) Pseudomonas putida W619 6111220 YP_001749137.1 CDS PputW619_2268 NC_010501.1 2525915 2526475 R hypothetical protein complement(2525915..2526475) Pseudomonas putida W619 6111221 YP_001749138.1 CDS PputW619_2269 NC_010501.1 2526983 2527234 R hypothetical protein complement(2526983..2527234) Pseudomonas putida W619 6111222 YP_001749139.1 CDS PputW619_2270 NC_010501.1 2527414 2528115 R hypothetical protein complement(2527414..2528115) Pseudomonas putida W619 6111223 YP_001749140.1 CDS PputW619_2271 NC_010501.1 2529131 2530279 D hypothetical protein 2529131..2530279 Pseudomonas putida W619 6111224 YP_001749141.1 CDS PputW619_2272 NC_010501.1 2531469 2531789 D KEGG: pap:PSPA7_3053 hypothetical protein; hypothetical protein 2531469..2531789 Pseudomonas putida W619 6111225 YP_001749142.1 CDS PputW619_2273 NC_010501.1 2531851 2532039 D KEGG: pfl:PFL_0750 hypothetical protein; hypothetical protein 2531851..2532039 Pseudomonas putida W619 6111226 YP_001749143.1 CDS PputW619_2274 NC_010501.1 2532470 2532862 R KEGG: eba:ebA2473 hypothetical gene; hypothetical protein complement(2532470..2532862) Pseudomonas putida W619 6111227 YP_001749144.1 CDS PputW619_2275 NC_010501.1 2533233 2534207 R KEGG: pap:PSPA7_3057 TnpT protein; TnpT protein complement(2533233..2534207) Pseudomonas putida W619 6111228 YP_001749145.1 CDS PputW619_2276 NC_010501.1 2534353 2535288 D PFAM: integrase family protein; KEGG: pmy:Pmen_2249 phage integrase family protein; integrase family protein 2534353..2535288 Pseudomonas putida W619 6111229 YP_001749146.1 CDS PputW619_2277 NC_010501.1 2535693 2537855 D KEGG: bte:BTH_I0097 hypothetical protein; hypothetical protein 2535693..2537855 Pseudomonas putida W619 6111230 YP_001749147.1 CDS PputW619_2278 NC_010501.1 2537852 2538532 D KEGG: bte:BTH_I0098 hypothetical protein; hypothetical protein 2537852..2538532 Pseudomonas putida W619 6111231 YP_001749148.1 CDS PputW619_2279 NC_010501.1 2539077 2541032 D KEGG: rxy:Rxyl_1791 adenine-specific DNA methylase containing a Zn-ribbon-like protein; adenine-specific DNA methylase 2539077..2541032 Pseudomonas putida W619 6111232 YP_001749149.1 CDS PputW619_2280 NC_010501.1 2541063 2545274 D SMART: AAA ATPase; KEGG: rxy:Rxyl_1790 superfamily I DNA and RNA helicases and helicase subunits-like protein; ATPase AAA 2541063..2545274 Pseudomonas putida W619 6111233 YP_001749150.1 CDS PputW619_2281 NC_010501.1 2545337 2546278 R KEGG: sao:SAOUHSC_01931 hypothetical protein; hypothetical protein complement(2545337..2546278) Pseudomonas putida W619 6111234 YP_001749151.1 CDS PputW619_2282 NC_010501.1 2546783 2547703 D KEGG: psb:Psyr_5116 hypothetical protein; hypothetical protein 2546783..2547703 Pseudomonas putida W619 6111235 YP_001749152.1 CDS PputW619_2283 NC_010501.1 2547707 2551369 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: psb:Psyr_5115 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase 2547707..2551369 Pseudomonas putida W619 6111236 YP_001749153.1 CDS PputW619_2284 NC_010501.1 2551957 2553918 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: psp:PSPPH_2856 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(2551957..2553918) Pseudomonas putida W619 6111237 YP_001749154.1 CDS PputW619_2285 NC_010501.1 2555087 2556478 R PFAM: aminotransferase class-III; KEGG: atc:AGR_L_242 hypothetical protein; hypothetical protein complement(2555087..2556478) Pseudomonas putida W619 6111238 YP_001749155.1 CDS PputW619_2286 NC_010501.1 2556500 2557972 R PFAM: Aldehyde Dehydrogenase_; KEGG: atu:Atu4762 succinate semialdehyde dehydrogenase; aldehyde dehydrogenase complement(2556500..2557972) Pseudomonas putida W619 6111239 YP_001749156.1 CDS PputW619_2287 NC_010501.1 2558097 2558687 R PFAM: protein of unknown function DUF1185; KEGG: bam:Bamb_4326 protein of unknown function DUF1185; hypothetical protein complement(2558097..2558687) Pseudomonas putida W619 6111240 YP_001749157.1 CDS PputW619_2288 NC_010501.1 2558830 2560623 D PFAM: GAF domain protein; KEGG: bam:Bamb_4325 hypothetical protein; PucR family transcriptional regulator 2558830..2560623 Pseudomonas putida W619 6111241 YP_001749158.1 CDS PputW619_2289 NC_010501.1 2560783 2561754 D PFAM: flavin reductase domain protein FMN-binding; KEGG: bam:Bamb_4324 flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 2560783..2561754 Pseudomonas putida W619 6111242 YP_001749159.1 CDS PputW619_2290 NC_010501.1 2561780 2563291 D PFAM: Aldehyde Dehydrogenase_; KEGG: bam:Bamb_4323 aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 2561780..2563291 Pseudomonas putida W619 6111243 YP_001749160.1 CDS PputW619_2291 NC_010501.1 2563331 2564395 D PFAM: luciferase family protein; KEGG: bam:Bamb_4322 luciferase family protein; luciferase family protein 2563331..2564395 Pseudomonas putida W619 6111244 YP_001749161.1 CDS PputW619_2292 NC_010501.1 2564414 2565241 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_4321 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein 2564414..2565241 Pseudomonas putida W619 6111245 YP_001749162.1 CDS PputW619_2293 NC_010501.1 2565475 2566653 D KEGG: bam:Bamb_4319 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2565475..2566653 Pseudomonas putida W619 6111246 YP_001749163.1 CDS PputW619_2294 NC_010501.1 2566646 2567560 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline; binding-protein-dependent transport system inner membrane protein 2566646..2567560 Pseudomonas putida W619 6111247 YP_001749164.1 CDS proX NC_010501.1 2567636 2568649 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 2567636..2568649 Pseudomonas putida W619 6111248 YP_001749165.1 CDS PputW619_2296 NC_010501.1 2568711 2569082 D TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_2568 carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 2568711..2569082 Pseudomonas putida W619 6111249 YP_001749166.1 CDS PputW619_2297 NC_010501.1 2569180 2570199 D PFAM: aldo/keto reductase; KEGG: rso:RS03071 putative oxidoreductase protein; aldo/keto reductase 2569180..2570199 Pseudomonas putida W619 6111250 YP_001749167.1 CDS PputW619_2298 NC_010501.1 2570651 2571052 D PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA; LrgA family protein 2570651..2571052 Pseudomonas putida W619 6111251 YP_001749168.1 CDS PputW619_2299 NC_010501.1 2571184 2571771 D PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein; LrgB family protein 2571184..2571771 Pseudomonas putida W619 6111252 YP_001749169.1 CDS PputW619_2300 NC_010501.1 2571786 2573030 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: psa:PST_0550 malic enzyme; malate dehydrogenase complement(2571786..2573030) Pseudomonas putida W619 6111253 YP_001749170.1 CDS PputW619_2301 NC_010501.1 2573092 2574777 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: pau:PA14_63080 L-lactate permease; L-lactate transport complement(2573092..2574777) Pseudomonas putida W619 6111254 YP_001749171.1 CDS PputW619_2302 NC_010501.1 2574994 2577171 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(2574994..2577171) Pseudomonas putida W619 6111255 YP_001749172.1 CDS PputW619_2303 NC_010501.1 2577217 2577615 R PFAM: protein of unknown function DUF336; KEGG: pmy:Pmen_0200 protein of unknown function DUF336; hypothetical protein complement(2577217..2577615) Pseudomonas putida W619 6111256 YP_001749173.1 CDS glcF NC_010501.1 2577814 2579031 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pmy:Pmen_0201 protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit complement(2577814..2579031) Pseudomonas putida W619 6111257 YP_001749174.1 CDS PputW619_2305 NC_010501.1 2579041 2580093 R PFAM: FAD linked oxidase domain protein; KEGG: pmy:Pmen_0202 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(2579041..2580093) Pseudomonas putida W619 6111258 YP_001749175.1 CDS PputW619_2306 NC_010501.1 2580093 2581592 R TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: psa:PST_0431 glycolate oxidase, subunit GlcD; glycolate oxidase subunit GlcD complement(2580093..2581592) Pseudomonas putida W619 6111259 YP_001749176.1 CDS PputW619_2307 NC_010501.1 2581852 2582631 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: psa:PST_0430 transcriptional regulator GlcC; DNA-binding transcriptional regulator GlcC 2581852..2582631 Pseudomonas putida W619 6111260 YP_001749177.1 CDS PputW619_2308 NC_010501.1 2582680 2584101 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2582680..2584101) Pseudomonas putida W619 6111261 YP_001749178.1 CDS PputW619_2309 NC_010501.1 2584091 2585371 R PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase complement(2584091..2585371) Pseudomonas putida W619 6111262 YP_001749179.1 CDS PputW619_2310 NC_010501.1 2585553 2586437 R KEGG: pap:PSPA7_3831 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(2585553..2586437) Pseudomonas putida W619 6111263 YP_001749180.1 CDS PputW619_2311 NC_010501.1 2586514 2587284 R KEGG: pfo:Pfl_1597 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(2586514..2587284) Pseudomonas putida W619 6111264 YP_001749181.1 CDS PputW619_2312 NC_010501.1 2587298 2589073 R catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase complement(2587298..2589073) Pseudomonas putida W619 6111265 YP_001749182.1 CDS PputW619_2313 NC_010501.1 2589186 2590091 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_3113 transcriptional regulator, LysR family; LysR family transcriptional regulator 2589186..2590091 Pseudomonas putida W619 6111266 YP_001749183.1 CDS PputW619_2314 NC_010501.1 2590135 2591040 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_B0678 transcriptional regulator, LysR family; LysR family transcriptional regulator 2590135..2591040 Pseudomonas putida W619 6111267 YP_001749184.1 CDS PputW619_2315 NC_010501.1 2591057 2592127 R KEGG: bxe:Bxe_B0677 hypothetical protein; hypothetical protein complement(2591057..2592127) Pseudomonas putida W619 6111268 YP_001749185.1 CDS PputW619_2316 NC_010501.1 2592491 2593906 D KEGG: azc:AZC_1360 sensor protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2592491..2593906 Pseudomonas putida W619 6111269 YP_001749186.1 CDS PputW619_2317 NC_010501.1 2593903 2594532 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pfo:Pfl_2459 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2593903..2594532 Pseudomonas putida W619 6111270 YP_001749187.1 CDS PputW619_2318 NC_010501.1 2594614 2594991 D PFAM: response regulator receiver; KEGG: rpb:RPB_0182 response regulator receiver domain protein; response regulator receiver protein 2594614..2594991 Pseudomonas putida W619 6111271 YP_001749188.1 CDS PputW619_2319 NC_010501.1 2595152 2596792 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfo:Pfl_1418 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2595152..2596792 Pseudomonas putida W619 6111272 YP_001749189.1 CDS PputW619_2320 NC_010501.1 2596797 2597903 D KEGG: dar:Daro_3508 PAS:GGDEF; putative diguanylate cyclase 2596797..2597903 Pseudomonas putida W619 6111273 YP_001749190.1 CDS PputW619_2321 NC_010501.1 2597880 2600846 R PFAM: transposase Tn3 family protein; KEGG: pap:PSPA7_5337 transposase; transposase Tn3 family protein complement(2597880..2600846) Pseudomonas putida W619 6111274 YP_001749191.1 CDS PputW619_2322 NC_010501.1 2600850 2601410 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: maq:Maqu_3982 resolvase, N-terminal domain; resolvase domain-containing protein complement(2600850..2601410) Pseudomonas putida W619 6111275 YP_001749192.1 CDS PputW619_2323 NC_010501.1 2601675 2602109 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bxe:Bxe_C1217 transcriptional regulator, MerR family; putative transcriptional regulator MerR complement(2601675..2602109) Pseudomonas putida W619 6111276 YP_001749193.1 CDS PputW619_2324 NC_010501.1 2602202 2602747 D KEGG: mms:mma_1753 organomercurial lyase; organomercurial lyase 2602202..2602747 Pseudomonas putida W619 6111277 YP_001749194.1 CDS PputW619_2325 NC_010501.1 2602829 2603236 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: abo:ABO_1367 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2602829..2603236) Pseudomonas putida W619 6111278 YP_001749195.1 CDS PputW619_2326 NC_010501.1 2603332 2604228 D KEGG: bxe:Bxe_C0883 heavy metal/H+ antiporter, CDF family; CDF family heavy metal/H(+) antiporter 2603332..2604228 Pseudomonas putida W619 6111279 YP_001749196.1 CDS PputW619_2327 NC_010501.1 2604232 2604744 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2604232..2604744 Pseudomonas putida W619 6111280 YP_001749197.1 CDS PputW619_2328 NC_010501.1 2604766 2606055 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: ilo:IL0633.1 Il-IS_2, transposase; transposase IS204/IS1001/IS1096/IS1165 family protein 2604766..2606055 Pseudomonas putida W619 6111281 YP_001749198.1 CDS PputW619_2329 NC_010501.1 2606340 2606672 R PFAM: small multidrug resistance protein; KEGG: rca:Rcas_0172 small multidrug resistance protein; small multidrug resistance protein complement(2606340..2606672) Pseudomonas putida W619 6111282 YP_001749199.1 CDS PputW619_2330 NC_010501.1 2606725 2607117 R PFAM: small multidrug resistance protein; KEGG: gsu:GSU0708 multidrug resistance protein; small multidrug resistance protein complement(2606725..2607117) Pseudomonas putida W619 6111283 YP_001749200.1 CDS PputW619_2331 NC_010501.1 2607196 2607597 R PFAM: regulatory protein ArsR; KEGG: hau:Haur_3282 transcriptional regulator, TrmB; ArsR family transcriptional regulator complement(2607196..2607597) Pseudomonas putida W619 6111284 YP_001749201.1 CDS PputW619_2332 NC_010501.1 2607662 2608345 D PFAM: Resolvase domain; KEGG: ppd:Ppro_3694 resolvase, N-terminal domain; resolvase domain-containing protein 2607662..2608345 Pseudomonas putida W619 6111285 YP_001749202.1 CDS PputW619_2333 NC_010501.1 2608490 2608786 D PFAM: regulatory protein LysR; KEGG: mpt:Mpe_A2330 putative transcription regulator protein; LysR family transcriptional regulator 2608490..2608786 Pseudomonas putida W619 6111286 YP_001749203.1 CDS PputW619_2334 NC_010501.1 2608968 2609390 R KEGG: bvi:Bcep1808_7197 integrase, catalytic region; integrase, catalytic region complement(2608968..2609390) Pseudomonas putida W619 6111287 YP_001749204.1 CDS PputW619_2335 NC_010501.1 2609567 2610556 R PFAM: EAL domain protein; KEGG: rme:Rmet_6186 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase complement(2609567..2610556) Pseudomonas putida W619 6111288 YP_001749205.1 CDS PputW619_2336 NC_010501.1 2610553 2610789 R PFAM: MerE family protein; KEGG: rme:Rmet_6185 MerE; putative mercury resistance protein complement(2610553..2610789) Pseudomonas putida W619 6111289 YP_001749206.1 CDS PputW619_2337 NC_010501.1 2610786 2611151 R TIGRFAM: mercuric resistence transcriptional repressor protein MerD; PFAM: regulatory protein MerR; KEGG: pap:PSPA7_0105 mercuric resistence transcriptional repressor protein MerD; transcriptional regulator MerD complement(2610786..2611151) Pseudomonas putida W619 6111290 YP_001749207.1 CDS PputW619_2338 NC_010501.1 2611169 2612854 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6183 mercuric reductase MerA; putative mercuric reductase complement(2611169..2612854) Pseudomonas putida W619 6111291 YP_001749208.1 CDS PputW619_2339 NC_010501.1 2612926 2613201 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_6173 mercuric transport protein periplasmic component; mercuric transport protein periplasmic protein complement(2612926..2613201) Pseudomonas putida W619 6111292 YP_001749209.1 CDS PputW619_2340 NC_010501.1 2613214 2613564 R PFAM: Mercuric transport protein MerT; KEGG: reu:Reut_D6497 mercuric transport protein MerT; putative mercuric transport protein complement(2613214..2613564) Pseudomonas putida W619 6111293 YP_001749210.1 CDS PputW619_2341 NC_010501.1 2613636 2614070 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_6344 transcriptional regulator, MerR family; putative transcriptional regulator MerR 2613636..2614070 Pseudomonas putida W619 6111294 YP_001749211.1 CDS PputW619_2342 NC_010501.1 2614261 2615391 D PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: eba:ebA163 sensory box/GGDEF family protein; diguanylate cyclase/phosphodiesterase 2614261..2615391 Pseudomonas putida W619 6111295 YP_001749212.1 CDS PputW619_2343 NC_010501.1 2615689 2616264 D KEGG: fjo:Fjoh_3056 UBA/ThiF-type NAD/FAD binding protein; UBA/ThiF-type NAD/FAD binding protein 2615689..2616264 Pseudomonas putida W619 6111296 YP_001749213.1 CDS PputW619_2344 NC_010501.1 2616470 2617240 D KEGG: pna:Pnap_4928 hypothetical protein; hypothetical protein 2616470..2617240 Pseudomonas putida W619 6111297 YP_001749214.1 CDS PputW619_2345 NC_010501.1 2617310 2617672 R KEGG: pst:PSPTO_4755 hypothetical protein; hypothetical protein complement(2617310..2617672) Pseudomonas putida W619 6111298 YP_001749215.1 CDS PputW619_2346 NC_010501.1 2618253 2618633 D KEGG: pst:PSPTO_4329 ISPs1, transposase OrfA; ISPs1, transposase OrfA 2618253..2618633 Pseudomonas putida W619 6111299 YP_001749216.1 CDS PputW619_2347 NC_010501.1 2618669 2619109 D PFAM: transposase IS4 family protein; KEGG: pst:PSPTO_4328 ISPs1, transposase OrfB; transposase IS4 family protein 2618669..2619109 Pseudomonas putida W619 6111300 YP_001749217.1 CDS PputW619_2348 NC_010501.1 2619179 2619937 R PFAM: Silent information regulator protein Sir2; KEGG: psp:PSPPH_4322 NAD-dependent deacetylase 4 (regulatory protein SIR2homolog 4); silent information regulator protein Sir2 complement(2619179..2619937) Pseudomonas putida W619 6111301 YP_001749218.1 CDS PputW619_2349 NC_010501.1 2620129 2620524 R KEGG: pst:PSPTO_0585 hypothetical protein; hypothetical protein complement(2620129..2620524) Pseudomonas putida W619 6111302 YP_001749219.1 CDS PputW619_2350 NC_010501.1 2620733 2621008 D PFAM: helix-turn-helix domain protein; KEGG: psp:PSPPH_2800 transcriptional regulator, PbsX family; helix-turn-helix domain-containing protein 2620733..2621008 Pseudomonas putida W619 6111303 YP_001749220.1 CDS PputW619_2351 NC_010501.1 2621363 2621803 R KEGG: eba:ebA2473 hypothetical gene; hypothetical protein complement(2621363..2621803) Pseudomonas putida W619 6111304 YP_001749221.1 CDS PputW619_2352 NC_010501.1 2622060 2622377 R KEGG: asa:ASA_P4G008 hypothetical protein; hypothetical protein complement(2622060..2622377) Pseudomonas putida W619 6111305 YP_001749222.1 CDS PputW619_2353 NC_010501.1 2622844 2623002 D KEGG: pst:PSPTO_5590 ISPsy5, Orf1; hypothetical protein 2622844..2623002 Pseudomonas putida W619 6111306 YP_001749223.1 CDS PputW619_2354 NC_010501.1 2623604 2624458 D KEGG: xau:Xaut_3730 hypothetical protein; hypothetical protein 2623604..2624458 Pseudomonas putida W619 6111307 YP_001749224.1 CDS PputW619_2355 NC_010501.1 2624474 2627107 D KEGG: swi:Swit_1380 tetratricopeptide TPR_4; hypothetical protein 2624474..2627107 Pseudomonas putida W619 6111308 YP_001749225.1 CDS PputW619_2356 NC_010501.1 2627309 2628631 R KEGG: bam:Bamb_3947 peptidase S1 and S6, chymotrypsin/Hap; hypothetical protein complement(2627309..2628631) Pseudomonas putida W619 6111309 YP_001749226.1 CDS PputW619_2357 NC_010501.1 2628666 2629448 R KEGG: bte:BTH_II1813 hypothetical protein; hypothetical protein complement(2628666..2629448) Pseudomonas putida W619 6111310 YP_001749227.1 CDS PputW619_2358 NC_010501.1 2629644 2629859 R hypothetical protein complement(2629644..2629859) Pseudomonas putida W619 6111311 YP_001749228.1 CDS PputW619_2359 NC_010501.1 2630208 2631125 R hypothetical protein complement(2630208..2631125) Pseudomonas putida W619 6111312 YP_001749229.1 CDS PputW619_2360 NC_010501.1 2632433 2632987 R hypothetical protein complement(2632433..2632987) Pseudomonas putida W619 6111313 YP_001749230.1 CDS PputW619_2361 NC_010501.1 2633823 2634362 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ajs:Ajs_2120 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2633823..2634362 Pseudomonas putida W619 6111314 YP_001749231.1 CDS PputW619_2362 NC_010501.1 2634412 2635098 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN1928 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2634412..2635098) Pseudomonas putida W619 6111315 YP_001749232.1 CDS PputW619_2363 NC_010501.1 2635178 2636119 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(2635178..2636119) Pseudomonas putida W619 6111316 YP_001749233.1 CDS PputW619_2364 NC_010501.1 2636244 2637125 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1930 transcriptional regulator, LysR family; LysR family transcriptional regulator 2636244..2637125 Pseudomonas putida W619 6111317 YP_001749234.1 CDS PputW619_2365 NC_010501.1 2637166 2637372 R TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: pen:PSEEN1931 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(2637166..2637372) Pseudomonas putida W619 6111318 YP_001749235.1 CDS PputW619_2366 NC_010501.1 2637391 2638125 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN1932 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(2637391..2638125) Pseudomonas putida W619 6111319 YP_001749236.1 CDS PputW619_2367 NC_010501.1 2638250 2639170 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN1933 transcriptional regulator, LysR family; LysR family transcriptional regulator 2638250..2639170 Pseudomonas putida W619 6111320 YP_001749237.1 CDS PputW619_2368 NC_010501.1 2639264 2639527 D KEGG: pen:PSEEN1934 hypothetical protein; hypothetical protein 2639264..2639527 Pseudomonas putida W619 6111321 YP_001749238.1 CDS PputW619_2369 NC_010501.1 2639655 2640323 R PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pen:PSEEN1937 hypothetical protein; SH3 type 3 domain-containing protein complement(2639655..2640323) Pseudomonas putida W619 6111322 YP_001749239.1 CDS PputW619_2370 NC_010501.1 2640563 2641780 R KEGG: hch:HCH_05630 hypothetical protein; hypothetical protein complement(2640563..2641780) Pseudomonas putida W619 6111323 YP_001749240.1 CDS PputW619_2371 NC_010501.1 2641992 2642501 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pen:PSEEN2353 hypothetical protein; 3-demethylubiquinone-9 3-methyltransferase 2641992..2642501 Pseudomonas putida W619 6111324 YP_001749241.1 CDS PputW619_2372 NC_010501.1 2642531 2643595 R TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: psp:PSPPH_3023 AbrB protein; membrane protein AbrB complement(2642531..2643595) Pseudomonas putida W619 6111325 YP_001749242.1 CDS PputW619_2373 NC_010501.1 2643718 2644620 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2331 transcriptional regulator, LysR family; LysR family transcriptional regulator 2643718..2644620 Pseudomonas putida W619 6111326 YP_001749243.1 CDS PputW619_2374 NC_010501.1 2644678 2645883 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:Pfl_2451 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2644678..2645883) Pseudomonas putida W619 6111327 YP_001749244.1 CDS PputW619_2375 NC_010501.1 2645966 2647021 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2453 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(2645966..2647021) Pseudomonas putida W619 6111328 YP_001749245.1 CDS PputW619_2376 NC_010501.1 2647265 2648152 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3025 hypothetical protein; hypothetical protein 2647265..2648152 Pseudomonas putida W619 6111329 YP_001749246.1 CDS PputW619_2377 NC_010501.1 2648248 2648568 D PFAM: protein of unknown function DUF74; KEGG: pen:PSEEN3024 hypothetical protein; hypothetical protein 2648248..2648568 Pseudomonas putida W619 6111330 YP_001749247.1 CDS PputW619_2378 NC_010501.1 2648711 2648899 D KEGG: pen:PSEEN3023 hypothetical protein; hypothetical protein 2648711..2648899 Pseudomonas putida W619 6111331 YP_001749248.1 CDS PputW619_2379 NC_010501.1 2649042 2649341 D KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein 2649042..2649341 Pseudomonas putida W619 6111332 YP_001749249.1 CDS PputW619_2380 NC_010501.1 2649399 2649731 R KEGG: pen:PSEEN3020 hypothetical protein; hypothetical protein complement(2649399..2649731) Pseudomonas putida W619 6111333 YP_001749250.1 CDS ampC NC_010501.1 2650030 2651169 R PFAM: beta-lactamase; KEGG: pen:PSEEN3018 beta-lactamase class C; beta-lactamase complement(2650030..2651169) Pseudomonas putida W619 6111334 YP_001749251.1 CDS PputW619_2382 NC_010501.1 2651288 2652280 D PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3017 hypothetical protein; bile acid:sodium symporter 2651288..2652280 Pseudomonas putida W619 6111335 YP_001749252.1 CDS PputW619_2383 NC_010501.1 2652337 2652930 R KEGG: pen:PSEEN2061 hypothetical protein; hypothetical protein complement(2652337..2652930) Pseudomonas putida W619 6111336 YP_001749253.1 CDS PputW619_2384 NC_010501.1 2652917 2653480 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN2062 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2652917..2653480) Pseudomonas putida W619 6111337 YP_001749254.1 CDS PputW619_2385 NC_010501.1 2653569 2654300 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2063 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 2653569..2654300 Pseudomonas putida W619 6111338 YP_001749255.1 CDS PputW619_2386 NC_010501.1 2654328 2654921 D PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN2064 2-hydroxychromene-2-carboxylate isomerase; DSBA oxidoreductase 2654328..2654921 Pseudomonas putida W619 6111339 YP_001749256.1 CDS PputW619_2387 NC_010501.1 2654979 2655524 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2066 transcriptional regulator; XRE family transcriptional regulator complement(2654979..2655524) Pseudomonas putida W619 6111340 YP_001749257.1 CDS PputW619_2388 NC_010501.1 2655601 2656803 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2067 transporter, MFS family; major facilitator transporter complement(2655601..2656803) Pseudomonas putida W619 6111341 YP_001749258.1 CDS PputW619_2389 NC_010501.1 2656891 2657424 R PFAM: cytochrome B561; KEGG: pen:PSEEN2068 cytochrome b561; cytochrome B561 complement(2656891..2657424) Pseudomonas putida W619 6111342 YP_001749259.1 CDS PputW619_2390 NC_010501.1 2657421 2658467 R PFAM: Catalase domain protein; KEGG: pen:PSEEN2069 catalase; catalase domain-containing protein complement(2657421..2658467) Pseudomonas putida W619 6111343 YP_001749260.1 CDS PputW619_2391 NC_010501.1 2658597 2659118 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN2071 ECF sigma factor PrtI; ECF subfamily RNA polymerase sigma-24 factor 2658597..2659118 Pseudomonas putida W619 6111344 YP_001749261.1 CDS PputW619_2392 NC_010501.1 2659115 2659867 D KEGG: pen:PSEEN2072 transmembrane regulator PrtR; putative transmembrane anti-sigma factor 2659115..2659867 Pseudomonas putida W619 6111345 YP_001749262.1 CDS PputW619_2393 NC_010501.1 2660025 2660837 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(2660025..2660837) Pseudomonas putida W619 6111346 YP_001749263.1 CDS PputW619_2394 NC_010501.1 2661000 2661650 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2077 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2661000..2661650 Pseudomonas putida W619 6111347 YP_001749264.1 CDS PputW619_2395 NC_010501.1 2661693 2663444 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN2078 surface antigen; surface antigen (D15) 2661693..2663444 Pseudomonas putida W619 6111348 YP_001749265.1 CDS PputW619_2396 NC_010501.1 2663444 2667115 D PFAM: protein of unknown function DUF490; KEGG: pen:PSEEN2079 hypothetical protein; hypothetical protein 2663444..2667115 Pseudomonas putida W619 6111349 YP_001749266.1 CDS PputW619_2397 NC_010501.1 2667126 2667683 R KEGG: pfl:PFL_0780 hypothetical protein; hypothetical protein complement(2667126..2667683) Pseudomonas putida W619 6111350 YP_001749267.1 CDS PputW619_2398 NC_010501.1 2667756 2668412 R KEGG: pfl:PFL_0781 hypothetical protein; hypothetical protein complement(2667756..2668412) Pseudomonas putida W619 6111351 YP_001749268.1 CDS PputW619_2399 NC_010501.1 2668478 2668858 R KEGG: pen:PSEEN2080 hypothetical protein; hypothetical protein complement(2668478..2668858) Pseudomonas putida W619 6111352 YP_001749269.1 CDS PputW619_2400 NC_010501.1 2669091 2669591 R KEGG: pfl:PFL_0784 hypothetical protein; hypothetical protein complement(2669091..2669591) Pseudomonas putida W619 6111353 YP_001749270.1 CDS PputW619_2401 NC_010501.1 2669743 2669931 D KEGG: pen:PSEEN2081 hypothetical protein; hypothetical protein 2669743..2669931 Pseudomonas putida W619 6111354 YP_001749271.1 CDS PputW619_2402 NC_010501.1 2669968 2670342 R KEGG: pen:PSEEN2082 hypothetical protein; hypothetical protein complement(2669968..2670342) Pseudomonas putida W619 6111355 YP_001749272.1 CDS PputW619_2403 NC_010501.1 2670541 2672853 D PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN2083 penicillin amidase; peptidase S45 penicillin amidase 2670541..2672853 Pseudomonas putida W619 6111356 YP_001749273.1 CDS PputW619_2404 NC_010501.1 2672985 2673707 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(2672985..2673707) Pseudomonas putida W619 6111357 YP_001749274.1 CDS PputW619_2405 NC_010501.1 2673704 2674204 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN2085 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2673704..2674204) Pseudomonas putida W619 6111358 YP_001749275.1 CDS PputW619_2406 NC_010501.1 2674453 2676156 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2674453..2676156 Pseudomonas putida W619 6111359 YP_001749276.1 CDS cysS NC_010501.1 2676166 2677548 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2676166..2677548 Pseudomonas putida W619 6111360 YP_001749277.1 CDS PputW619_2408 NC_010501.1 2677683 2679074 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2088 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2677683..2679074) Pseudomonas putida W619 6111361 YP_001749278.1 CDS PputW619_2409 NC_010501.1 2679052 2679732 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2089 DNA-binding response regulator; two component transcriptional regulator complement(2679052..2679732) Pseudomonas putida W619 6111362 YP_001749279.1 CDS PputW619_2410 NC_010501.1 2679972 2680991 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(2679972..2680991) Pseudomonas putida W619 6111363 YP_001749280.1 CDS PputW619_2411 NC_010501.1 2681114 2682706 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A1931 ABC-type transporter, duplicated ATPase domains:drug RA1 family; ABC transporter-like protein complement(2681114..2682706) Pseudomonas putida W619 6111364 YP_001749281.1 CDS PputW619_2412 NC_010501.1 2682875 2683234 R KEGG: pen:PSEEN2091 hypothetical protein; hypothetical protein complement(2682875..2683234) Pseudomonas putida W619 6111365 YP_001749282.1 CDS PputW619_2413 NC_010501.1 2683231 2683608 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2092 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2683231..2683608) Pseudomonas putida W619 6111366 YP_001749283.1 CDS PputW619_2414 NC_010501.1 2683937 2684770 D PFAM: Urease accessory protein UreD; KEGG: pen:PSEEN2093 urease accessory protein UreD; urease accessory protein UreD 2683937..2684770 Pseudomonas putida W619 6111367 YP_001749284.1 CDS ureA NC_010501.1 2684780 2685082 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 2684780..2685082 Pseudomonas putida W619 6111368 YP_001749285.1 CDS ureB NC_010501.1 2685102 2685419 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 2685102..2685419 Pseudomonas putida W619 6111369 YP_001749286.1 CDS ureC NC_010501.1 2685416 2687119 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 2685416..2687119 Pseudomonas putida W619 6111370 YP_001749287.1 CDS ureE NC_010501.1 2687130 2687615 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 2687130..2687615 Pseudomonas putida W619 6111371 YP_001749288.1 CDS PputW619_2419 NC_010501.1 2687636 2688181 D PFAM: HupE/UreJ protein; KEGG: pen:PSEEN2098 urease accessory protein UreJ; HupE/UreJ protein 2687636..2688181 Pseudomonas putida W619 6111372 YP_001749289.1 CDS PputW619_2420 NC_010501.1 2688181 2688855 D PFAM: Urease accessory protein UreF; KEGG: pen:PSEEN2099 urease accessory protein UreF; urease accessory protein UreF 2688181..2688855 Pseudomonas putida W619 6111373 YP_001749290.1 CDS PputW619_2421 NC_010501.1 2688867 2689490 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: pen:PSEEN2100 urease accessory protein UreG; urease accessory protein UreG 2688867..2689490 Pseudomonas putida W619 6111374 YP_001749291.1 CDS PputW619_2422 NC_010501.1 2689453 2691051 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Cache domain protein; KEGG: cko:CKO_00438 hypothetical protein; diguanylate cyclase complement(2689453..2691051) Pseudomonas putida W619 6111375 YP_001749292.1 CDS PputW619_2423 NC_010501.1 2691165 2691887 R PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pen:PSEEN3016 hypothetical protein; hypothetical protein complement(2691165..2691887) Pseudomonas putida W619 6111376 YP_001749293.1 CDS PputW619_2424 NC_010501.1 2692007 2692672 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN3015 hydrolase, haloacid dehalogenase-like family; HAD family hydrolase complement(2692007..2692672) Pseudomonas putida W619 6111377 YP_001749294.1 CDS PputW619_2425 NC_010501.1 2692766 2693383 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2692766..2693383 Pseudomonas putida W619 6111378 YP_001749295.1 CDS PputW619_2426 NC_010501.1 2693383 2694003 D KEGG: pen:PSEEN2413 hypothetical protein; hypothetical protein 2693383..2694003 Pseudomonas putida W619 6111379 YP_001749296.1 CDS PputW619_2427 NC_010501.1 2694010 2695428 D KEGG: pen:PSEEN2414 nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA repair nucleotidyltransferase/DNA polymerase 2694010..2695428 Pseudomonas putida W619 6111380 YP_001749297.1 CDS dnaE2 NC_010501.1 2695425 2698505 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2695425..2698505 Pseudomonas putida W619 6111381 YP_001749298.1 CDS PputW619_2429 NC_010501.1 2698561 2699373 R PFAM: aldo/keto reductase; KEGG: pen:PSEEN2462 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(2698561..2699373) Pseudomonas putida W619 6111382 YP_001749299.1 CDS PputW619_2430 NC_010501.1 2699370 2700275 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2463 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2699370..2700275) Pseudomonas putida W619 6111383 YP_001749300.1 CDS PputW619_2431 NC_010501.1 2700415 2701113 D KEGG: pen:PSEEN2464 acetoacetyl-CoA transferase, alpha subunit; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2700415..2701113 Pseudomonas putida W619 6111384 YP_001749301.1 CDS PputW619_2432 NC_010501.1 2701149 2701805 D KEGG: pen:PSEEN2465 acetoacetyl-CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2701149..2701805 Pseudomonas putida W619 6111385 YP_001749302.1 CDS PputW619_2433 NC_010501.1 2701953 2703371 D PFAM: short chain fatty acid transporter; KEGG: pen:PSEEN2481 short-chain fatty acid transporter (scFAT family); short chain fatty acid transporter 2701953..2703371 Pseudomonas putida W619 6111386 YP_001749303.1 CDS PputW619_2434 NC_010501.1 2703517 2704338 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pfl:PFL_3317 transcriptional regulator, AraC family; AraC family transcriptional regulator 2703517..2704338 Pseudomonas putida W619 6111387 YP_001749304.1 CDS PputW619_2435 NC_010501.1 2704300 2704881 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_3318 efflux protein, LysE family; lysine exporter protein LysE/YggA complement(2704300..2704881) Pseudomonas putida W619 6111388 YP_001749305.1 CDS PputW619_2436 NC_010501.1 2705140 2706711 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: pen:PSEEN3059 hypothetical protein; integral membrane protein TerC 2705140..2706711 Pseudomonas putida W619 6111389 YP_001749306.1 CDS PputW619_2437 NC_010501.1 2706674 2707561 R TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein complement(2706674..2707561) Pseudomonas putida W619 6111390 YP_001749307.1 CDS PputW619_2438 NC_010501.1 2707594 2709180 R PFAM: EAL domain protein; KEGG: pen:PSEEN3057 phosphodiesterase (EAL domain); diguanylate phosphodiesterase complement(2707594..2709180) Pseudomonas putida W619 6111391 YP_001749308.1 CDS PputW619_2439 NC_010501.1 2709345 2709452 D KEGG: pen:PSEEN3055 hypothetical protein; hypothetical protein 2709345..2709452 Pseudomonas putida W619 6111392 YP_001749309.1 CDS PputW619_2440 NC_010501.1 2709479 2710555 D KEGG: pen:PSEEN3054 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase); TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 2709479..2710555 Pseudomonas putida W619 6111393 YP_001749310.1 CDS PputW619_2441 NC_010501.1 2710572 2711378 R KEGG: pfo:Pfl_2920 putative diguanylate phosphodiesterase (EAL domain); hypothetical protein complement(2710572..2711378) Pseudomonas putida W619 6111394 YP_001749311.1 CDS PputW619_2442 NC_010501.1 2711513 2712196 R PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN3053 hypothetical protein; ThiJ/PfpI domain-containing protein complement(2711513..2712196) Pseudomonas putida W619 6111395 YP_001749312.1 CDS PputW619_2443 NC_010501.1 2712491 2714464 D KEGG: pen:PSEEN3051 sensory box histidine kinase/response regulator (hybrid); TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor hybrid histidine kinase 2712491..2714464 Pseudomonas putida W619 6111396 YP_001749313.1 CDS PputW619_2444 NC_010501.1 2714470 2716149 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3246 sensor histidine kinase/response regulator; histidine kinase complement(2714470..2716149) Pseudomonas putida W619 6111397 YP_001749314.1 CDS PputW619_2445 NC_010501.1 2716176 2717231 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN3050 hypothetical protein; hypothetical protein complement(2716176..2717231) Pseudomonas putida W619 6111398 YP_001749315.1 CDS PputW619_2446 NC_010501.1 2717432 2718847 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2311 multidrug efflux RND outer membrane protein OprN; RND efflux system outer membrane lipoprotein complement(2717432..2718847) Pseudomonas putida W619 6111399 YP_001749316.1 CDS PputW619_2447 NC_010501.1 2718844 2722023 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2312 acridine efflux pump (RND family); hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2718844..2722023) Pseudomonas putida W619 6111400 YP_001749317.1 CDS PputW619_2448 NC_010501.1 2722036 2723277 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2313 multidrug efflux RND membrane fusion protein MexE; RND family efflux transporter MFP subunit complement(2722036..2723277) Pseudomonas putida W619 6111401 YP_001749318.1 CDS PputW619_2449 NC_010501.1 2723457 2724629 D PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_2181 major facilitator superfamily; major facilitator transporter 2723457..2724629 Pseudomonas putida W619 6111402 YP_001749319.1 CDS PputW619_2450 NC_010501.1 2724769 2725248 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2001 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(2724769..2725248) Pseudomonas putida W619 6111403 YP_001749320.1 CDS PputW619_2451 NC_010501.1 2725377 2726006 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2002 transporter, LysE family; lysine exporter protein LysE/YggA 2725377..2726006 Pseudomonas putida W619 6111404 YP_001749321.1 CDS PputW619_2452 NC_010501.1 2726028 2726900 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN2003 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 2726028..2726900 Pseudomonas putida W619 6111405 YP_001749322.1 CDS PputW619_2453 NC_010501.1 2727002 2727877 D PFAM: Pirin domain protein; KEGG: pen:PSEEN2646 hypothetical protein; pirin domain-containing protein 2727002..2727877 Pseudomonas putida W619 6111406 YP_001749323.1 CDS PputW619_2454 NC_010501.1 2728097 2728357 D PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN2104 hypothetical protein; hypothetical protein 2728097..2728357 Pseudomonas putida W619 6111407 YP_001749324.1 CDS PputW619_2455 NC_010501.1 2728438 2728725 R KEGG: pen:PSEEN2105 hypothetical protein; hypothetical protein complement(2728438..2728725) Pseudomonas putida W619 6111408 YP_001749325.1 CDS PputW619_2456 NC_010501.1 2728996 2734875 D KEGG: pen:PSEEN2857 hypothetical protein; hypothetical protein 2728996..2734875 Pseudomonas putida W619 6111409 YP_001749326.1 CDS PputW619_2457 NC_010501.1 2734894 2736876 D PFAM: cytochrome d1 heme region; KEGG: pen:PSEEN2854 hypothetical protein; cytochrome d1 heme subunit 2734894..2736876 Pseudomonas putida W619 6111410 YP_001749327.1 CDS PputW619_2458 NC_010501.1 2736873 2737529 D PFAM: electron transport protein SCO1/SenC; KEGG: pen:PSEEN2853 Sco1/SenC family protein; electron transport protein SCO1/SenC 2736873..2737529 Pseudomonas putida W619 6111411 YP_001749328.1 CDS PputW619_2459 NC_010501.1 2737526 2738191 D KEGG: pen:PSEEN2852 SCO1/SenC family protein; SCO1/SenC family protein 2737526..2738191 Pseudomonas putida W619 6111412 YP_001749329.1 CDS PputW619_2460 NC_010501.1 2738302 2739828 D KEGG: pen:PSEEN2851 cytochrome c; cytochrome c 2738302..2739828 Pseudomonas putida W619 6111413 YP_001749330.1 CDS PputW619_2461 NC_010501.1 2739841 2740482 D KEGG: pen:PSEEN2850 hypothetical protein; hypothetical protein 2739841..2740482 Pseudomonas putida W619 6111414 YP_001749331.1 CDS PputW619_2462 NC_010501.1 2740723 2741253 D PFAM: response regulator receiver; KEGG: pen:PSEEN2849 response regulator; response regulator receiver protein 2740723..2741253 Pseudomonas putida W619 6111415 YP_001749332.1 CDS PputW619_2463 NC_010501.1 2741311 2743101 D PFAM: type II secretion system protein E; KEGG: pen:PSEEN2848 type II secretion system protein E; type II secretion system protein E 2741311..2743101 Pseudomonas putida W619 6111416 YP_001749333.1 CDS PputW619_2464 NC_010501.1 2743082 2743876 D KEGG: pen:PSEEN2847 hypothetical protein; hypothetical protein 2743082..2743876 Pseudomonas putida W619 6111417 YP_001749334.1 CDS PputW619_2465 NC_010501.1 2743878 2744420 D KEGG: pen:PSEEN2846 hypothetical protein; hypothetical protein 2743878..2744420 Pseudomonas putida W619 6111418 YP_001749335.1 CDS PputW619_2466 NC_010501.1 2744407 2744970 D KEGG: pen:PSEEN2845 hypothetical protein; hypothetical protein 2744407..2744970 Pseudomonas putida W619 6111419 YP_001749336.1 CDS PputW619_2467 NC_010501.1 2744970 2745467 D KEGG: pen:PSEEN2844 hypothetical protein; hypothetical protein 2744970..2745467 Pseudomonas putida W619 6111420 YP_001749337.1 CDS PputW619_2468 NC_010501.1 2745464 2747341 D PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN2843 secretion type II protein related to GspD (secretin) protein; type II and III secretion system protein 2745464..2747341 Pseudomonas putida W619 6111421 YP_001749338.1 CDS PputW619_2469 NC_010501.1 2747338 2747811 D KEGG: pen:PSEEN2842 secretion type II protein related to protein G. signal peptide; G protein signal peptide-like secretion type II protein 2747338..2747811 Pseudomonas putida W619 6111422 YP_001749339.1 CDS PputW619_2470 NC_010501.1 2747817 2748191 D PFAM: type II secretion system protein G; KEGG: pen:PSEEN2841 secretion protein; type II secretion system protein G 2747817..2748191 Pseudomonas putida W619 6111423 YP_001749340.1 CDS PputW619_2471 NC_010501.1 2748166 2748693 D KEGG: pen:PSEEN2840 hypothetical protein; hypothetical protein 2748166..2748693 Pseudomonas putida W619 6111424 YP_001749341.1 CDS PputW619_2472 NC_010501.1 2748690 2749097 D chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 2748690..2749097 Pseudomonas putida W619 6111425 YP_001749342.1 CDS PputW619_2473 NC_010501.1 2749094 2749507 D KEGG: pen:PSEEN2838 curli production assembly/transport component CsgF precursor; curli production assembly/transport protein CsgF 2749094..2749507 Pseudomonas putida W619 6111426 YP_001749343.1 CDS PputW619_2474 NC_010501.1 2749541 2750392 D PFAM: Curli production assembly/transport component CsgG; KEGG: pen:PSEEN2837 curli production assembly/transport component CsgG precursor; curli production assembly/transport protein CsgG 2749541..2750392 Pseudomonas putida W619 6111427 YP_001749344.1 CDS PputW619_2475 NC_010501.1 2750485 2751207 R PFAM: ribonuclease T2; KEGG: mlo:mll1611 probable ribonuclease; ribonuclease T2 complement(2750485..2751207) Pseudomonas putida W619 6111428 YP_001749345.1 CDS PputW619_2476 NC_010501.1 2751321 2751965 R PFAM: 2OG-Fe(II) oxygenase; KEGG: pen:PSEEN2825 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, repair of alkylated DNA; 2OG-Fe(II) oxygenase complement(2751321..2751965) Pseudomonas putida W619 6111429 YP_001749346.1 CDS PputW619_2477 NC_010501.1 2752007 2752360 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2914 hypothetical protein; cupin complement(2752007..2752360) Pseudomonas putida W619 6111430 YP_001749347.1 CDS PputW619_2478 NC_010501.1 2752478 2753377 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2913 transcriptional regulator, LysR family; LysR family transcriptional regulator 2752478..2753377 Pseudomonas putida W619 6111431 YP_001749348.1 CDS PputW619_2479 NC_010501.1 2753491 2754699 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2912 transporter, MFS superfamily; major facilitator transporter 2753491..2754699 Pseudomonas putida W619 6111432 YP_001749349.1 CDS PputW619_2480 NC_010501.1 2754704 2755315 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2911 transporter, LysE family; lysine exporter protein LysE/YggA complement(2754704..2755315) Pseudomonas putida W619 6111433 YP_001749350.1 CDS PputW619_2481 NC_010501.1 2755422 2756417 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN2910 transcriptional regulator, AraC family; AraC family transcriptional regulator 2755422..2756417 Pseudomonas putida W619 6111434 YP_001749351.1 CDS PputW619_2482 NC_010501.1 2756384 2757235 R PFAM: SCP-like extracellular; KEGG: pen:PSEEN2909 hypothetical protein; hypothetical protein complement(2756384..2757235) Pseudomonas putida W619 6111435 YP_001749352.1 CDS PputW619_2483 NC_010501.1 2757484 2758095 R PFAM: cell wall hydrolase SleB; KEGG: pen:PSEEN2908 hypothetical protein; cell wall hydrolase SleB complement(2757484..2758095) Pseudomonas putida W619 6111436 YP_001749353.1 CDS PputW619_2484 NC_010501.1 2758144 2759061 R PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN2907 hypothetical protein; auxin efflux carrier complement(2758144..2759061) Pseudomonas putida W619 6111437 YP_001749354.1 CDS PputW619_2485 NC_010501.1 2759267 2759782 D PFAM: superoxide dismutase copper/zinc binding; KEGG: bpe:BP2067 putative superoxide dismutase; superoxide dismutase 2759267..2759782 Pseudomonas putida W619 6111438 YP_001749355.1 CDS PputW619_2486 NC_010501.1 2759789 2760388 R PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN2926 hypothetical protein; lipid-binding START domain-containing protein complement(2759789..2760388) Pseudomonas putida W619 6111439 YP_001749356.1 CDS PputW619_2487 NC_010501.1 2760478 2761314 R TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN2925 hypothetical protein; hypothetical protein complement(2760478..2761314) Pseudomonas putida W619 6111440 YP_001749357.1 CDS PputW619_2488 NC_010501.1 2761515 2762186 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2169 hypothetical protein; type 11 methyltransferase complement(2761515..2762186) Pseudomonas putida W619 6111441 YP_001749358.1 CDS PputW619_2489 NC_010501.1 2762231 2762782 R PFAM: PEBP family protein; KEGG: reu:Reut_B3733 YbhB and YbcL; PEBP family protein complement(2762231..2762782) Pseudomonas putida W619 6111442 YP_001749359.1 CDS PputW619_2490 NC_010501.1 2762831 2763142 R KEGG: pen:PSEEN2677 hypothetical protein; hypothetical protein complement(2762831..2763142) Pseudomonas putida W619 6111443 YP_001749360.1 CDS PputW619_2491 NC_010501.1 2763255 2764547 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2678 hypothetical protein; major facilitator transporter complement(2763255..2764547) Pseudomonas putida W619 6111444 YP_001749361.1 CDS PputW619_2492 NC_010501.1 2765084 2765959 D PFAM: Auxin Efflux Carrier; KEGG: pap:PSPA7_3571 hypothetical protein; auxin efflux carrier 2765084..2765959 Pseudomonas putida W619 6111445 YP_001749362.1 CDS PputW619_2493 NC_010501.1 2765995 2766627 R KEGG: pen:PSEEN2680 hypothetical protein; hypothetical protein complement(2765995..2766627) Pseudomonas putida W619 6111446 YP_001749363.1 CDS PputW619_2494 NC_010501.1 2766757 2767890 R PFAM: secretion protein HlyD family protein; KEGG: pfo:Pfl_3448 secretion protein HlyD; secretion protein HlyD family protein complement(2766757..2767890) Pseudomonas putida W619 6111447 YP_001749364.1 CDS PputW619_2495 NC_010501.1 2767887 2769536 R PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_3449 major facilitator superfamily MFS_1; major facilitator transporter complement(2767887..2769536) Pseudomonas putida W619 6111448 YP_001749365.1 CDS PputW619_2496 NC_010501.1 2769660 2772176 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pfl:PFL_3691 UvrABC system, A protein; excinuclease ABC subunit A complement(2769660..2772176) Pseudomonas putida W619 6111449 YP_001749366.1 CDS PputW619_2497 NC_010501.1 2772239 2773333 R TIGRFAM: type VI secretion-associated protein, ImpA family; PFAM: ImpA domain protein; KEGG: psp:PSPPH_0121 ImpA-related N-terminal family; ImpA family type VI secretion-associated protein complement(2772239..2773333) Pseudomonas putida W619 6111450 YP_001749367.1 CDS PputW619_2498 NC_010501.1 2773428 2773946 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: psp:PSPPH_0122 hypothetical protein; Hcp1 family type VI secretion system effector complement(2773428..2773946) Pseudomonas putida W619 6111451 YP_001749368.1 CDS PputW619_2499 NC_010501.1 2774090 2776585 R PFAM: OmpA/MotB domain protein; KEGG: psp:PSPPH_0123 OmpA domain protein; OmpA/MotB domain-containing protein complement(2774090..2776585) Pseudomonas putida W619 6111452 YP_001749369.1 CDS PputW619_2500 NC_010501.1 2776582 2777490 R KEGG: psb:Psyr_4963 hypothetical protein; hypothetical protein complement(2776582..2777490) Pseudomonas putida W619 6111453 YP_001749370.1 CDS PputW619_2501 NC_010501.1 2777487 2781293 R TIGRFAM: type VI secretion protein IcmF; PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: psp:PSPPH_0125 ImcF-related family; type VI secretion protein IcmF complement(2777487..2781293) Pseudomonas putida W619 6111454 YP_001749371.1 CDS PputW619_2502 NC_010501.1 2781324 2782040 R KEGG: psp:PSPPH_0126 hypothetical protein; hypothetical protein complement(2781324..2782040) Pseudomonas putida W619 6111455 YP_001749372.1 CDS PputW619_2503 NC_010501.1 2782037 2783380 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: psb:Psyr_4960 protein of unknown function DUF876; type VI secretion protein complement(2782037..2783380) Pseudomonas putida W619 6111456 YP_001749373.1 CDS PputW619_2504 NC_010501.1 2783377 2784099 R KEGG: psp:PSPPH_0128 lipoprotein, putative; putative lipoprotein complement(2783377..2784099) Pseudomonas putida W619 6111457 YP_001749374.1 CDS PputW619_2505 NC_010501.1 2784125 2786722 R KEGG: psb:Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N terminal; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase complement(2784125..2786722) Pseudomonas putida W619 6111458 YP_001749375.1 CDS PputW619_2506 NC_010501.1 2786719 2787789 R TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: psp:PSPPH_0130 ImpH; type VI secretion protein complement(2786719..2787789) Pseudomonas putida W619 6111459 YP_001749376.1 CDS PputW619_2507 NC_010501.1 2787753 2789573 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879; type VI secretion protein complement(2787753..2789573) Pseudomonas putida W619 6111460 YP_001749377.1 CDS PputW619_2508 NC_010501.1 2789573 2790055 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: psp:PSPPH_0132 protein of unknown function (DUF1316) subfamily; type VI secretion system lysozyme-like protein complement(2789573..2790055) Pseudomonas putida W619 6111461 YP_001749378.1 CDS PputW619_2509 NC_010501.1 2790082 2791584 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: psp:PSPPH_0133 hypothetical protein; EvpB family type VI secretion protein complement(2790082..2791584) Pseudomonas putida W619 6111462 YP_001749379.1 CDS PputW619_2510 NC_010501.1 2791599 2792132 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: psp:PSPPH_0134 hypothetical protein; type VI secretion protein complement(2791599..2792132) Pseudomonas putida W619 6111463 YP_001749380.1 CDS PputW619_2511 NC_010501.1 2792195 2792944 R KEGG: psp:PSPPH_0135 hypothetical protein; hypothetical protein complement(2792195..2792944) Pseudomonas putida W619 6111464 YP_001749381.1 CDS PputW619_2512 NC_010501.1 2793687 2794238 R KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein complement(2793687..2794238) Pseudomonas putida W619 6111465 YP_001749382.1 CDS PputW619_2513 NC_010501.1 2794369 2795484 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: psb:Psyr_4977 ADP-ribosylglycohydrolase; ADP-ribosyl-(dinitrogen reductase) hydrolase 2794369..2795484 Pseudomonas putida W619 6111466 YP_001749383.1 CDS PputW619_2514 NC_010501.1 2796122 2796493 R KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein complement(2796122..2796493) Pseudomonas putida W619 6111467 YP_001749384.1 CDS PputW619_2515 NC_010501.1 2796885 2797442 R KEGG: psb:Psyr_4979 hypothetical protein; hypothetical protein complement(2796885..2797442) Pseudomonas putida W619 6111468 YP_001749385.1 CDS PputW619_2516 NC_010501.1 2797445 2798461 R KEGG: aav:Aave_3264 hypothetical protein; hypothetical protein complement(2797445..2798461) Pseudomonas putida W619 6111469 YP_001749386.1 CDS PputW619_2517 NC_010501.1 2798673 2800523 D TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: psb:Psyr_4983 rhs element Vgr protein; ImpA family type VI secretion-associated protein 2798673..2800523 Pseudomonas putida W619 6111470 YP_001749387.1 CDS PputW619_2518 NC_010501.1 2800534 2801115 D KEGG: psp:PSPPH_5070 hypothetical protein; hypothetical protein 2800534..2801115 Pseudomonas putida W619 6111471 YP_001749388.1 CDS PputW619_2519 NC_010501.1 2801154 2801621 D PFAM: Domain of unknown function DUF1795; KEGG: psp:PSPPH_5071 hypothetical protein; hypothetical protein 2801154..2801621 Pseudomonas putida W619 6111472 YP_001749389.1 CDS PputW619_2520 NC_010501.1 2801626 2805861 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 2801626..2805861 Pseudomonas putida W619 6111473 YP_001749390.1 CDS PputW619_2521 NC_010501.1 2805870 2806655 D KEGG: ypp:YPDSF_0223 hypothetical protein; hypothetical protein 2805870..2806655 Pseudomonas putida W619 6111474 YP_001749391.1 CDS PputW619_2524 NC_010501.1 2808692 2809285 D KEGG: psp:PSPPH_1452 hypothetical protein; hypothetical protein 2808692..2809285 Pseudomonas putida W619 6111476 YP_001749392.1 CDS PputW619_2525 NC_010501.1 2809651 2811336 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 2809651..2811336 Pseudomonas putida W619 6111477 YP_001749393.1 CDS PputW619_2526 NC_010501.1 2811416 2811925 D KEGG: aav:Aave_3473 hypothetical protein; hypothetical protein 2811416..2811925 Pseudomonas putida W619 6111478 YP_001749394.1 CDS PputW619_2527 NC_010501.1 2812360 2812890 D KEGG: shw:Sputw3181_3748 hypothetical protein; hypothetical protein 2812360..2812890 Pseudomonas putida W619 6111479 YP_001749395.1 CDS PputW619_2528 NC_010501.1 2813055 2813906 D TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2813055..2813906 Pseudomonas putida W619 6111480 YP_001749396.1 CDS PputW619_2529 NC_010501.1 2814316 2814726 D KEGG: esa:ESA_03888 hypothetical protein; hypothetical protein 2814316..2814726 Pseudomonas putida W619 6111481 YP_001749397.1 CDS PputW619_2532 NC_010501.1 2815376 2815987 D KEGG: shw:Sputw3181_3749 hypothetical protein; hypothetical protein 2815376..2815987 Pseudomonas putida W619 6111483 YP_001749398.1 CDS PputW619_2533 NC_010501.1 2815963 2816100 D KEGG: psb:Psyr_4992 YD repeat; YD repeat-containing protein 2815963..2816100 Pseudomonas putida W619 6111484 YP_001749399.1 CDS PputW619_2534 NC_010501.1 2816522 2816746 D hypothetical protein 2816522..2816746 Pseudomonas putida W619 6111485 YP_001749400.1 CDS PputW619_2535 NC_010501.1 2817035 2817409 D KEGG: psb:Psyr_2605 transposase, putative; transposase 2817035..2817409 Pseudomonas putida W619 6111486 YP_001749401.1 CDS PputW619_2536 NC_010501.1 2817788 2818063 D hypothetical protein 2817788..2818063 Pseudomonas putida W619 6111487 YP_001749402.1 CDS PputW619_2537 NC_010501.1 2818060 2818695 D KEGG: shw:Sputw3181_3749 hypothetical protein; hypothetical protein 2818060..2818695 Pseudomonas putida W619 6111488 YP_001749403.1 CDS PputW619_2538 NC_010501.1 2818986 2819333 D KEGG: psp:PSPPH_5073 hypothetical protein; hypothetical protein 2818986..2819333 Pseudomonas putida W619 6111489 YP_001749404.1 CDS PputW619_2540 NC_010501.1 2820294 2820755 D KEGG: stm:STM0294 putative cytoplasmic protein; putative cytoplasmic protein 2820294..2820755 Pseudomonas putida W619 6111491 YP_001749405.1 CDS PputW619_2541 NC_010501.1 2820899 2821690 D PFAM: aminoacyl-tRNA synthetase class I; KEGG: fjo:Fjoh_0894 hypothetical protein; aminoacyl-tRNA synthetase class I 2820899..2821690 Pseudomonas putida W619 6111492 YP_001749406.1 CDS PputW619_2543 NC_010501.1 2822808 2823335 D KEGG: esa:ESA_03898 hypothetical protein; hypothetical protein 2822808..2823335 Pseudomonas putida W619 6111494 YP_001749407.1 CDS PputW619_2544 NC_010501.1 2824082 2824333 D KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2824082..2824333 Pseudomonas putida W619 6111495 YP_001749408.1 CDS PputW619_2545 NC_010501.1 2824662 2824979 D hypothetical protein 2824662..2824979 Pseudomonas putida W619 6111496 YP_001749409.1 CDS PputW619_2546 NC_010501.1 2825208 2825450 D KEGG: psb:Psyr_4986 YD repeat; YD repeat-containing protein 2825208..2825450 Pseudomonas putida W619 6111497 YP_001749410.1 CDS PputW619_2547 NC_010501.1 2825872 2826141 R KEGG: pen:PSEEN3074 hypothetical protein; hypothetical protein complement(2825872..2826141) Pseudomonas putida W619 6111498 YP_001749411.1 CDS PputW619_2548 NC_010501.1 2826306 2826491 R KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein complement(2826306..2826491) Pseudomonas putida W619 6111499 YP_001749412.1 CDS PputW619_2549 NC_010501.1 2827025 2828194 D KEGG: pfo:Pfl_1291 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2827025..2828194 Pseudomonas putida W619 6111500 YP_001749413.1 CDS PputW619_2550 NC_010501.1 2828255 2829565 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1292 general substrate transporter; major facilitator transporter 2828255..2829565 Pseudomonas putida W619 6111501 YP_001749414.1 CDS PputW619_2551 NC_010501.1 2829562 2831019 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2829562..2831019 Pseudomonas putida W619 6111502 YP_001749415.1 CDS PputW619_2552 NC_010501.1 2831089 2831862 D PFAM: regulatory protein IclR; KEGG: pfo:Pfl_1294 transcriptional regulator, IclR family; IclR family transcriptional regulator 2831089..2831862 Pseudomonas putida W619 6111503 YP_001749416.1 CDS PputW619_2553 NC_010501.1 2831950 2832606 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_2026 ABC transporter-like; ABC transporter-like protein 2831950..2832606 Pseudomonas putida W619 6111504 YP_001749417.1 CDS PputW619_2554 NC_010501.1 2832606 2835065 D PFAM: protein of unknown function DUF214; KEGG: pfl:PFL_2229 ABC transporter, permease protein, putative; hypothetical protein 2832606..2835065 Pseudomonas putida W619 6111505 YP_001749418.1 CDS PputW619_2555 NC_010501.1 2835055 2836113 D KEGG: pfl:PFL_2230 lipoprotein, putative; putative lipoprotein 2835055..2836113 Pseudomonas putida W619 6111506 YP_001749419.1 CDS PputW619_2556 NC_010501.1 2836183 2837178 R PFAM: aldo/keto reductase; KEGG: psb:Psyr_1790 aldo/keto reductase; aldo/keto reductase complement(2836183..2837178) Pseudomonas putida W619 6111507 YP_001749420.1 CDS PputW619_2557 NC_010501.1 2837275 2838126 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbt:BBta_7356 putative transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2837275..2838126) Pseudomonas putida W619 6111508 YP_001749421.1 CDS PputW619_2558 NC_010501.1 2838323 2839234 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2437 transcriptional regulator, LysR-family; LysR family transcriptional regulator 2838323..2839234 Pseudomonas putida W619 6111509 YP_001749422.1 CDS PputW619_2559 NC_010501.1 2839336 2840244 D PFAM: pyruvate carboxyltransferase; KEGG: pna:Pnap_3685 pyruvate carboxyltransferase; pyruvate carboxyltransferase 2839336..2840244 Pseudomonas putida W619 6111510 YP_001749423.1 CDS PputW619_2560 NC_010501.1 2840256 2841449 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2438 predicted acyl-CoA transferase/carnitine dehydratase; L-carnitine dehydratase/bile acid-inducible protein F 2840256..2841449 Pseudomonas putida W619 6111511 YP_001749424.1 CDS PputW619_2561 NC_010501.1 2841452 2841976 D PFAM: transferase hexapeptide repeat containing protein; KEGG: bam:Bamb_2140 transferase hexapeptide repeat containing protein; hexapaptide repeat-containing transferase 2841452..2841976 Pseudomonas putida W619 6111512 YP_001749425.1 CDS PputW619_2562 NC_010501.1 2842042 2843358 D PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1316 general substrate transporter; major facilitator transporter 2842042..2843358 Pseudomonas putida W619 6111513 YP_001749426.1 CDS PputW619_2563 NC_010501.1 2843411 2844694 D PFAM: outer membrane porin; KEGG: pae:PA0755 probable porin; outer membrane porin 2843411..2844694 Pseudomonas putida W619 6111514 YP_001749427.1 CDS PputW619_2564 NC_010501.1 2844923 2845660 D KEGG: pfl:PFL_0053 hypothetical protein; gluconate 2-dehydrogenase 2844923..2845660 Pseudomonas putida W619 6111515 YP_001749428.1 CDS PputW619_2565 NC_010501.1 2845664 2847448 D PFAM: glucose-methanol-choline oxidoreductase; KEGG: pfo:Pfl_0085 glucose-methanol-choline oxidoreductase; gluconate 2-dehydrogenase 2845664..2847448 Pseudomonas putida W619 6111516 YP_001749429.1 CDS PputW619_2566 NC_010501.1 2847460 2848707 D PFAM: cytochrome c class I; KEGG: pfl:PFL_0055 cytochrome c family protein; gluconate 2-dehydrogenase 2847460..2848707 Pseudomonas putida W619 6111517 YP_001749430.1 CDS PputW619_2567 NC_010501.1 2848958 2849980 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pau:PA14_35370 transcriptional regulator PtxS; LacI family transcriptional regulator 2848958..2849980 Pseudomonas putida W619 6111518 YP_001749431.1 CDS PputW619_2568 NC_010501.1 2850052 2850831 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pap:PSPA7_2980 hypothetical protein; xylose isomerase domain-containing protein 2850052..2850831 Pseudomonas putida W619 6111519 YP_001749432.1 CDS PputW619_2569 NC_010501.1 2850824 2851774 D PFAM: PfkB domain protein; KEGG: pfo:Pfl_2902 PfkB; ribokinase-like domain-containing protein 2850824..2851774 Pseudomonas putida W619 6111520 YP_001749433.1 CDS PputW619_2570 NC_010501.1 2851836 2853128 D PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA2262 probable 2-ketogluconate transporter; major facilitator transporter 2851836..2853128 Pseudomonas putida W619 6111521 YP_001749434.1 CDS PputW619_2571 NC_010501.1 2853138 2854103 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pfo:Pfl_2904 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2853138..2854103 Pseudomonas putida W619 6111522 YP_001749435.1 CDS PputW619_2572 NC_010501.1 2854173 2855360 R PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_2918 major facilitator family transporter; major facilitator transporter complement(2854173..2855360) Pseudomonas putida W619 6111523 YP_001749436.1 CDS PputW619_2573 NC_010501.1 2855449 2856822 R PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_0446 putrescine importer; amino acid permease-associated protein complement(2855449..2856822) Pseudomonas putida W619 6111524 YP_001749437.1 CDS PputW619_2574 NC_010501.1 2857015 2859549 R PFAM: response regulator receiver; GAF domain protein; HWE histidine kinase; PAS fold-2 domain protein; KEGG: atc:AGR_C_3927 hypothetical protein; response regulator receiver modulated GAF sensor protein complement(2857015..2859549) Pseudomonas putida W619 6111525 YP_001749438.1 CDS PputW619_2575 NC_010501.1 2859779 2860162 R KEGG: pen:PSEEN2696 hypothetical protein; hypothetical protein complement(2859779..2860162) Pseudomonas putida W619 6111526 YP_001749439.1 CDS PputW619_2576 NC_010501.1 2860174 2861181 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmu:Bmul_5645 zinc-binding alcohol dehydrogenase family protein; zinc-binding alcohol dehydrogenase family protein complement(2860174..2861181) Pseudomonas putida W619 6111527 YP_001749440.1 CDS PputW619_2577 NC_010501.1 2861317 2862237 R PFAM: protein of unknown function UPF0187; KEGG: psb:Psyr_1182 hypothetical protein; hypothetical protein complement(2861317..2862237) Pseudomonas putida W619 6111528 YP_001749441.1 CDS PputW619_2578 NC_010501.1 2862407 2864476 D KEGG: psb:Psyr_3532 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2862407..2864476 Pseudomonas putida W619 6111529 YP_001749442.1 CDS PputW619_2579 NC_010501.1 2864508 2865083 R PFAM: protein of unknown function DUF330; KEGG: pfo:Pfl_2832 protein of unknown function DUF330; hypothetical protein complement(2864508..2865083) Pseudomonas putida W619 6111530 YP_001749443.1 CDS PputW619_2580 NC_010501.1 2865080 2866735 R PFAM: Mammalian cell entry related domain protein; KEGG: pfo:Pfl_2831 hypothetical protein; hypothetical protein complement(2865080..2866735) Pseudomonas putida W619 6111531 YP_001749444.1 CDS PputW619_2581 NC_010501.1 2866716 2867360 R PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2440 paraquat-inducible protein A; paraquat-inducible protein A complement(2866716..2867360) Pseudomonas putida W619 6111532 YP_001749445.1 CDS PputW619_2582 NC_010501.1 2867357 2867956 R PFAM: Paraquat-inducible protein A; KEGG: pfo:Pfl_2441 paraquat-inducible protein A; paraquat-inducible protein A complement(2867357..2867956) Pseudomonas putida W619 6111533 YP_001749446.1 CDS PputW619_2583 NC_010501.1 2868184 2868861 D KEGG: pfo:Pfl_2516 hypothetical protein; hypothetical protein 2868184..2868861 Pseudomonas putida W619 6111534 YP_001749447.1 CDS PputW619_2584 NC_010501.1 2868987 2869409 D KEGG: pen:PSEEN2728 lipoprotein; lipoprotein 2868987..2869409 Pseudomonas putida W619 6111535 YP_001749448.1 CDS PputW619_2585 NC_010501.1 2869503 2870120 D KEGG: pen:PSEEN2729 hypothetical protein; hypothetical protein 2869503..2870120 Pseudomonas putida W619 6111536 YP_001749449.1 CDS PputW619_2586 NC_010501.1 2870134 2871078 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pau:PA14_64810 vanillate O-demethylase oxidoreductase; ferredoxin complement(2870134..2871078) Pseudomonas putida W619 6111537 YP_001749450.1 CDS PputW619_2587 NC_010501.1 2871075 2872505 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: kpn:KPN_02032 putative hydrolase protein; amidohydrolase complement(2871075..2872505) Pseudomonas putida W619 6111538 YP_001749451.1 CDS PputW619_2588 NC_010501.1 2872522 2873325 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A2015 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein complement(2872522..2873325) Pseudomonas putida W619 6111539 YP_001749452.1 CDS PputW619_2589 NC_010501.1 2873362 2874216 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_A2014 ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit; ABC transporter-like protein complement(2873362..2874216) Pseudomonas putida W619 6111540 YP_001749453.1 CDS PputW619_2590 NC_010501.1 2874283 2875308 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_A2013 putative Rieske (2Fe-2S) family oxidoreductase, large subunit; Rieske (2Fe-2S) domain-containing protein complement(2874283..2875308) Pseudomonas putida W619 6111541 YP_001749454.1 CDS PputW619_2591 NC_010501.1 2875348 2876361 R PFAM: NMT1/THI5 like domain protein; KEGG: kpn:KPN_02033 ABC transporter, periplasmic binding component-related protein; NMT1/THI5-like domain-containing protein complement(2875348..2876361) Pseudomonas putida W619 6111542 YP_001749455.1 CDS PputW619_2592 NC_010501.1 2877008 2877814 D KEGG: psa:PST_2862 nucleoside-binding outer membrane protein; nucleoside-binding outer membrane protein 2877008..2877814 Pseudomonas putida W619 6111543 YP_001749456.1 CDS PputW619_2593 NC_010501.1 2878019 2879641 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pfl:PFL_5389 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 2878019..2879641 Pseudomonas putida W619 6111544 YP_001749457.1 CDS PputW619_2594 NC_010501.1 2879730 2879963 D KEGG: psa:PST_0566 hypothetical protein; hypothetical protein 2879730..2879963 Pseudomonas putida W619 6111545 YP_001749458.1 CDS PputW619_2595 NC_010501.1 2880387 2880764 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pst:PSPTO_3893 glyoxalase, putative; glyoxalase/bleomycin resistance protein/dioxygenase 2880387..2880764 Pseudomonas putida W619 6111546 YP_001749459.1 CDS PputW619_2596 NC_010501.1 2880938 2881579 R KEGG: bmu:Bmul_5287 3-oxoacid CoA-transferase, B subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2880938..2881579) Pseudomonas putida W619 6111547 YP_001749460.1 CDS PputW619_2597 NC_010501.1 2881588 2882280 R KEGG: bxe:Bxe_B0643 3-oxoadipate CoA-transferase subunit A (PcaI); TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2881588..2882280) Pseudomonas putida W619 6111548 YP_001749461.1 CDS PputW619_2598 NC_010501.1 2882711 2883052 R KEGG: mmw:Mmwyl1_1944 hypothetical protein; hypothetical protein complement(2882711..2883052) Pseudomonas putida W619 6111549 YP_001749462.1 CDS PputW619_2599 NC_010501.1 2883297 2884244 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: rso:RSc0625 probable transcription regulator protein; AraC family transcriptional regulator complement(2883297..2884244) Pseudomonas putida W619 6111550 YP_001749463.1 CDS PputW619_2600 NC_010501.1 2884528 2885493 D PFAM: dienelactone hydrolase; KEGG: pst:PSPTO_1580 hypothetical protein; dienelactone hydrolase 2884528..2885493 Pseudomonas putida W619 6111551 YP_001749464.1 CDS PputW619_2601 NC_010501.1 2885572 2886786 D PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6467 major facilitator superfamily MFS_1; major facilitator transporter 2885572..2886786 Pseudomonas putida W619 6111552 YP_001749465.1 CDS PputW619_2602 NC_010501.1 2886836 2887108 R KEGG: pen:PSEEN2766 hypothetical protein; hypothetical protein complement(2886836..2887108) Pseudomonas putida W619 6111553 YP_001749466.1 CDS PputW619_2603 NC_010501.1 2887165 2887707 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_5353 peptidase C56, PfpI; PfpI family intracellular peptidase complement(2887165..2887707) Pseudomonas putida W619 6111554 YP_001749467.1 CDS PputW619_2604 NC_010501.1 2887786 2889111 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pmy:Pmen_2360 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(2887786..2889111) Pseudomonas putida W619 6111555 YP_001749468.1 CDS PputW619_2605 NC_010501.1 2889211 2889510 R hypothetical protein complement(2889211..2889510) Pseudomonas putida W619 6111556 YP_001749469.1 CDS PputW619_2606 NC_010501.1 2889786 2890769 D PFAM: Integral membrane protein TerC; KEGG: pau:PA14_31610 putative membrane protein, TerC family; integral membrane protein TerC 2889786..2890769 Pseudomonas putida W619 6111557 YP_001749470.1 CDS PputW619_2607 NC_010501.1 2891022 2891318 R PFAM: transcriptional regulator domain protein; KEGG: bch:Bcen2424_4616 two component transcriptional regulator, winged helix family; winged helix family two component response transcriptional regulator complement(2891022..2891318) Pseudomonas putida W619 6111558 YP_001749471.1 CDS PputW619_2608 NC_010501.1 2891358 2891993 R cofactor involved in the reduction of disulfides; glutaredoxin complement(2891358..2891993) Pseudomonas putida W619 6111559 YP_001749472.1 CDS PputW619_2609 NC_010501.1 2892033 2892785 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_10840 putative dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2892033..2892785) Pseudomonas putida W619 6111560 YP_001749473.1 CDS PputW619_2610 NC_010501.1 2892845 2894875 R PFAM: Pyrrolo-quinoline quinone; KEGG: rsh:Rsph17029_3539 quinoprotein glucose dehydrogenase; Pyrrolo-quinoline quinone complement(2892845..2894875) Pseudomonas putida W619 6111561 YP_001749474.1 CDS PputW619_2611 NC_010501.1 2894887 2895291 R KEGG: rsh:Rsph17029_3538 glucose dehydrogenase-like protein; glucose dehydrogenase complement(2894887..2895291) Pseudomonas putida W619 6111562 YP_001749475.1 CDS PputW619_2612 NC_010501.1 2895323 2896624 R PFAM: major facilitator superfamily MFS_1; KEGG: gox:GOX0208 putative glucarate/galactarate transporter; major facilitator transporter complement(2895323..2896624) Pseudomonas putida W619 6111563 YP_001749476.1 CDS PputW619_2613 NC_010501.1 2896755 2897756 R PFAM: Transketolase central region; Transketolase domain protein; KEGG: reu:Reut_B4778 transketolase, central region:transketolase, C-terminal; transketolase central region complement(2896755..2897756) Pseudomonas putida W619 6111564 YP_001749477.1 CDS PputW619_2614 NC_010501.1 2897753 2898610 R PFAM: Transketolase domain protein; KEGG: dac:Daci_0728 transketolase domain protein; transketolase domain-containing protein complement(2897753..2898610) Pseudomonas putida W619 6111565 YP_001749478.1 CDS PputW619_2615 NC_010501.1 2898761 2899645 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ecj:JW0244 predicted DNA-binding transcriptional regulator; LysR family transcriptional regulator 2898761..2899645 Pseudomonas putida W619 6111566 YP_001749479.1 CDS PputW619_2616 NC_010501.1 2900008 2901402 D PFAM: Spore germination protein; amino acid permease-associated region; KEGG: cmi:CMM_2217 putative gamma-aminobutyrate permease, APC family; amino acid permease-associated protein 2900008..2901402 Pseudomonas putida W619 6111567 YP_001749480.1 CDS PputW619_2617 NC_010501.1 2901461 2902843 D PFAM: FAD dependent oxidoreductase; KEGG: nca:Noca_3231 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2901461..2902843 Pseudomonas putida W619 6111568 YP_001749481.1 CDS PputW619_2618 NC_010501.1 2902859 2903209 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll2946 hypothetical protein; hypothetical protein 2902859..2903209 Pseudomonas putida W619 6111569 YP_001749482.1 CDS PputW619_2619 NC_010501.1 2903273 2904841 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2903273..2904841 Pseudomonas putida W619 6111570 YP_001749483.1 CDS PputW619_2621 NC_010501.1 2907681 2908253 R hypothetical protein complement(2907681..2908253) Pseudomonas putida W619 6111572 YP_001749484.1 CDS PputW619_2623 NC_010501.1 2908670 2909674 R TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: pen:PSEEN2789 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator complement(2908670..2909674) Pseudomonas putida W619 6111574 YP_001749485.1 CDS PputW619_2624 NC_010501.1 2909671 2910270 R TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: pen:PSEEN2790 regulatory PhaM protein; phenylacetic acid degradation protein PaaY complement(2909671..2910270) Pseudomonas putida W619 6111575 YP_001749486.1 CDS PputW619_2625 NC_010501.1 2910617 2911390 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2791 enoyl-CoA hydratase/isomerase PhaA; enoyl-CoA hydratase-isomerase 2910617..2911390 Pseudomonas putida W619 6111576 YP_001749487.1 CDS PputW619_2626 NC_010501.1 2911428 2912219 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2911428..2912219 Pseudomonas putida W619 6111577 YP_001749488.1 CDS PputW619_2627 NC_010501.1 2912221 2913738 D converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase 2912221..2913738 Pseudomonas putida W619 6111578 YP_001749489.1 CDS PputW619_2628 NC_010501.1 2913731 2914186 D TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN2794 phenylacetic acid degradation protein; phenylacetic acid degradation protein PaaD 2913731..2914186 Pseudomonas putida W619 6111579 YP_001749490.1 CDS PputW619_2629 NC_010501.1 2914179 2915399 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2914179..2915399 Pseudomonas putida W619 6111580 YP_001749491.1 CDS PputW619_2630 NC_010501.1 2915506 2916825 D TIGRFAM: phenylacetate-CoA ligase; KEGG: pen:PSEEN2796 phenylacetyl-CoA ligase; phenylacetate-CoA ligase 2915506..2916825 Pseudomonas putida W619 6111581 YP_001749492.1 CDS paaA NC_010501.1 2917309 2918298 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2917309..2918298 Pseudomonas putida W619 6111582 YP_001749493.1 CDS paaB NC_010501.1 2918324 2918605 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2918324..2918605 Pseudomonas putida W619 6111583 YP_001749494.1 CDS PputW619_2633 NC_010501.1 2918614 2919372 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: pen:PSEEN2800 phenylacetic acid degradation, subunit of multicomponent oxygenase; phenylacetate-CoA oxygenase subunit PaaI 2918614..2919372 Pseudomonas putida W619 6111584 YP_001749495.1 CDS PputW619_2634 NC_010501.1 2919359 2919892 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: pen:PSEEN2801 ring-hydroxylation complex protein 3; phenylacetate-CoA oxygenase subunit PaaJ 2919359..2919892 Pseudomonas putida W619 6111585 YP_001749496.1 CDS PputW619_2635 NC_010501.1 2919908 2920984 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN2802 ring-hydroxylation complex protein 4; phenylacetate-CoA oxygenase/reductase subunit PaaK 2919908..2920984 Pseudomonas putida W619 6111586 YP_001749497.1 CDS PputW619_2636 NC_010501.1 2921067 2921375 D PFAM: protein of unknown function DUF485; KEGG: pen:PSEEN2803 hypothetical protein; hypothetical protein 2921067..2921375 Pseudomonas putida W619 6111587 YP_001749498.1 CDS PputW619_2637 NC_010501.1 2921372 2922934 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 2921372..2922934 Pseudomonas putida W619 6111588 YP_001749499.1 CDS PputW619_2638 NC_010501.1 2922967 2924199 D PFAM: outer membrane porin; KEGG: pen:PSEEN2805 phenylacetic acid-specific porin; outer membrane porin 2922967..2924199 Pseudomonas putida W619 6111589 YP_001749500.1 CDS PputW619_2639 NC_010501.1 2924224 2926275 D catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 2924224..2926275 Pseudomonas putida W619 6111590 YP_001749501.1 CDS PputW619_2640 NC_010501.1 2926637 2926906 R KEGG: pen:PSEEN3076 hypothetical protein; hypothetical protein complement(2926637..2926906) Pseudomonas putida W619 6111591 YP_001749502.1 CDS PputW619_2641 NC_010501.1 2927008 2928198 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pst:PSPTO_1875 glutathione-dependent formaldehyde dehydrogenase; alcohol dehydrogenase complement(2927008..2928198) Pseudomonas putida W619 6111592 YP_001749503.1 CDS PputW619_2642 NC_010501.1 2928271 2928483 R KEGG: pmy:Pmen_2359 hypothetical protein; hypothetical protein complement(2928271..2928483) Pseudomonas putida W619 6111593 YP_001749504.1 CDS PputW619_2643 NC_010501.1 2928653 2929204 R PFAM: peptidase S14 ClpP; KEGG: pen:PSEEN3077 clp protease (protease subunit); peptidase S14 ClpP complement(2928653..2929204) Pseudomonas putida W619 6111594 YP_001749505.1 CDS PputW619_2644 NC_010501.1 2929406 2930323 D PFAM: protein of unknown function DUF72; KEGG: psa:PST_2148 hypothetical protein; hypothetical protein 2929406..2930323 Pseudomonas putida W619 6111595 YP_001749506.1 CDS PputW619_2645 NC_010501.1 2930320 2931105 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN3079 DNase with DNase I-like domain; endonuclease/exonuclease/phosphatase 2930320..2931105 Pseudomonas putida W619 6111596 YP_001749507.1 CDS PputW619_2646 NC_010501.1 2931102 2932304 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pen:PSEEN3080 phospholipase (biosynthetic); cardiolipin synthase 2 2931102..2932304 Pseudomonas putida W619 6111597 YP_001749508.1 CDS PputW619_2647 NC_010501.1 2932304 2933263 D KEGG: pen:PSEEN3081 hypothetical protein; hypothetical protein 2932304..2933263 Pseudomonas putida W619 6111598 YP_001749509.1 CDS PputW619_2648 NC_010501.1 2933293 2933721 D KEGG: pmy:Pmen_2289 hypothetical protein; hypothetical protein 2933293..2933721 Pseudomonas putida W619 6111599 YP_001749510.1 CDS PputW619_2649 NC_010501.1 2933806 2934036 R KEGG: pen:PSEEN2769 metallothionein; metallothionein complement(2933806..2934036) Pseudomonas putida W619 6111600 YP_001749511.1 CDS PputW619_2650 NC_010501.1 2934039 2934491 R KEGG: pen:PSEEN2768 hypothetical protein; hypothetical protein complement(2934039..2934491) Pseudomonas putida W619 6111601 YP_001749512.1 CDS ligD NC_010501.1 2934643 2937141 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2934643..2937141 Pseudomonas putida W619 6111602 YP_001749513.1 CDS PputW619_2652 NC_010501.1 2937138 2938181 D KEGG: pen:PSEEN2765 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase 2937138..2938181 Pseudomonas putida W619 6111603 YP_001749514.1 CDS PputW619_2653 NC_010501.1 2938178 2938933 D PFAM: LmbE family protein; KEGG: pen:PSEEN2764 hypothetical protein; LmbE family protein 2938178..2938933 Pseudomonas putida W619 6111604 YP_001749515.1 CDS PputW619_2654 NC_010501.1 2938944 2939543 D PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2763 methyltransferase; type 12 methyltransferase 2938944..2939543 Pseudomonas putida W619 6111605 YP_001749516.1 CDS PputW619_2655 NC_010501.1 2939534 2940205 D PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2762 glycosyl transferase, group 2 family protein; glycosyl transferase family protein 2939534..2940205 Pseudomonas putida W619 6111606 YP_001749517.1 CDS PputW619_2656 NC_010501.1 2940294 2941142 R TIGRFAM: Ku protein; PFAM: Ku domain protein; KEGG: pen:PSEEN2761 Ku protein; Ku protein complement(2940294..2941142) Pseudomonas putida W619 6111607 YP_001749518.1 CDS PputW619_2657 NC_010501.1 2941413 2942003 R KEGG: fjo:Fjoh_3241 nucleoside phosphorylase-like protein; nucleoside phosphorylase-like protein complement(2941413..2942003) Pseudomonas putida W619 6111608 YP_001749519.1 CDS PputW619_2658 NC_010501.1 2942103 2943056 R PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pen:PSEEN3085 DNA methylase; methyltransferase small complement(2942103..2943056) Pseudomonas putida W619 6111609 YP_001749520.1 CDS PputW619_2659 NC_010501.1 2943056 2944390 R KEGG: pen:PSEEN3086 hypothetical protein; hypothetical protein complement(2943056..2944390) Pseudomonas putida W619 6111610 YP_001749521.1 CDS PputW619_2660 NC_010501.1 2944672 2944890 R KEGG: pen:PSEEN3087 hypothetical protein; hypothetical protein complement(2944672..2944890) Pseudomonas putida W619 6111611 YP_001749522.1 CDS PputW619_2661 NC_010501.1 2945001 2946320 R PFAM: major facilitator superfamily MFS_1; KEGG: mfa:Mfla_1799 major facilitator superfamily MFS_1; major facilitator transporter complement(2945001..2946320) Pseudomonas putida W619 6111612 YP_001749523.1 CDS PputW619_2662 NC_010501.1 2946325 2947233 R PFAM: aldo/keto reductase; KEGG: mfa:Mfla_1798 twin-arginine translocation pathway signal; aldo/keto reductase complement(2946325..2947233) Pseudomonas putida W619 6111613 YP_001749524.1 CDS PputW619_2663 NC_010501.1 2947323 2948204 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pen:PSEEN3113 Dyp-type peroxidase; Dyp-type peroxidase family protein complement(2947323..2948204) Pseudomonas putida W619 6111614 YP_001749525.1 CDS PputW619_2664 NC_010501.1 2948397 2949296 D PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN3114 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 2948397..2949296 Pseudomonas putida W619 6111615 YP_001749526.1 CDS PputW619_2665 NC_010501.1 2949302 2949769 R PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN3115 beta-carotene hydroxylase; fatty acid hydroxylase complement(2949302..2949769) Pseudomonas putida W619 6111616 YP_001749527.1 CDS PputW619_2666 NC_010501.1 2950179 2950892 D PFAM: MgtC/SapB transporter; KEGG: pen:PSEEN3117 magnesium transporter, MgtC family; MgtC/SapB transporter 2950179..2950892 Pseudomonas putida W619 6111617 YP_001749528.1 CDS PputW619_2667 NC_010501.1 2950905 2952473 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN3122 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(2950905..2952473) Pseudomonas putida W619 6111618 YP_001749529.1 CDS PputW619_2668 NC_010501.1 2952528 2953310 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pfo:Pfl_1868 exodeoxyribonuclease III xth; exodeoxyribonuclease III Xth complement(2952528..2953310) Pseudomonas putida W619 6111619 YP_001749530.1 CDS PputW619_2669 NC_010501.1 2953307 2953549 R KEGG: pfo:Pfl_2029 hypothetical protein; hypothetical protein complement(2953307..2953549) Pseudomonas putida W619 6111620 YP_001749531.1 CDS PputW619_2670 NC_010501.1 2953733 2954233 D KEGG: pfl:PFL_4730 lipoprotein, putative; putative lipoprotein 2953733..2954233 Pseudomonas putida W619 6111621 YP_001749532.1 CDS PputW619_2671 NC_010501.1 2954247 2954498 D KEGG: pfo:Pfl_4133 hypothetical protein; hypothetical protein 2954247..2954498 Pseudomonas putida W619 6111622 YP_001749533.1 CDS PputW619_2672 NC_010501.1 2954577 2955557 R KEGG: pen:PSEEN2808 Tn4652 cointegrate resolution protein T; Tn4652 cointegrate resolution protein T complement(2954577..2955557) Pseudomonas putida W619 6111623 YP_001749534.1 CDS PputW619_2673 NC_010501.1 2955837 2956451 D PFAM: YheO domain protein; KEGG: pen:PSEEN5014 hypothetical protein; YheO domain-containing protein 2955837..2956451 Pseudomonas putida W619 6111624 YP_001749535.1 CDS PputW619_2674 NC_010501.1 2956528 2957505 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN5013 threonine dehydratase; hypothetical protein 2956528..2957505 Pseudomonas putida W619 6111625 YP_001749536.1 CDS PputW619_2675 NC_010501.1 2957502 2958452 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2957502..2958452 Pseudomonas putida W619 6111626 YP_001749537.1 CDS PputW619_2676 NC_010501.1 2958476 2960224 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: nca:Noca_2609 choline/carnitine/betaine transporter; choline/carnitine/betaine transporter complement(2958476..2960224) Pseudomonas putida W619 6111627 YP_001749538.1 CDS PputW619_2677 NC_010501.1 2960440 2961099 R PFAM: TENA/THI-4 domain protein; KEGG: nwi:Nwi_0858 TenA/THI-4 protein; TenA family transcriptional regulator complement(2960440..2961099) Pseudomonas putida W619 6111628 YP_001749539.1 CDS PputW619_2678 NC_010501.1 2961102 2961749 R PFAM: TENA/THI-4 domain protein; KEGG: pde:Pden_3673 transcriptional activator, TenA family; TenA family transcriptional regulator complement(2961102..2961749) Pseudomonas putida W619 6111629 YP_001749540.1 CDS PputW619_2679 NC_010501.1 2962126 2964453 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2876 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase 2962126..2964453 Pseudomonas putida W619 6111630 YP_001749541.1 CDS PputW619_2680 NC_010501.1 2964544 2965494 D PFAM: integrase family protein; KEGG: pap:PSPA7_3058 cointegrate resolution protein S; integrase family protein 2964544..2965494 Pseudomonas putida W619 6111631 YP_001749542.1 CDS PputW619_2681 NC_010501.1 2965484 2967208 R PFAM: short-chain dehydrogenase/reductase SDR; SMP-30/Gluconolaconase/LRE domain protein; KEGG: ent:Ent638_1528 short-chain dehydrogenase/reductase SDR; SMP-30/gluconolaconase/LRE domain-containing protein complement(2965484..2967208) Pseudomonas putida W619 6111632 YP_001749543.1 CDS PputW619_2682 NC_010501.1 2967479 2968450 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2294 transcriptional regulator, LysR family; LysR family transcriptional regulator 2967479..2968450 Pseudomonas putida W619 6111633 YP_001749544.1 CDS PputW619_2683 NC_010501.1 2968439 2970274 R KEGG: pau:PA14_00640 potential phenazine-modifying enzyme; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase complement(2968439..2970274) Pseudomonas putida W619 6111634 YP_001749545.1 CDS PputW619_2684 NC_010501.1 2970285 2971670 R PFAM: Amidase; KEGG: mes:Meso_2714 amidase; amidase complement(2970285..2971670) Pseudomonas putida W619 6111635 YP_001749546.1 CDS PputW619_2685 NC_010501.1 2971667 2972653 R KEGG: aha:AHA_3393 acyl-coenzyme A synthetase; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein complement(2971667..2972653) Pseudomonas putida W619 6111636 YP_001749547.1 CDS PputW619_2686 NC_010501.1 2972650 2972934 R hypothetical protein complement(2972650..2972934) Pseudomonas putida W619 6111637 YP_001749548.1 CDS PputW619_2687 NC_010501.1 2972931 2973338 R hypothetical protein complement(2972931..2973338) Pseudomonas putida W619 6111638 YP_001749549.1 CDS PputW619_2688 NC_010501.1 2973348 2975063 R PFAM: Prenyltransferase/squalene oxidase; KEGG: pen:PSEEN4746 protein farnesyltransferase; prenyltransferase/squalene oxidase complement(2973348..2975063) Pseudomonas putida W619 6111639 YP_001749550.1 CDS PputW619_2689 NC_010501.1 2975060 2976376 R KEGG: stp:Strop_1038 hypothetical protein; coenzyme F390 synthetase-like protein complement(2975060..2976376) Pseudomonas putida W619 6111640 YP_001749551.1 CDS PputW619_2690 NC_010501.1 2976739 2977878 R PFAM: glycerate kinase; KEGG: pen:PSEEN2878 glycerate kinase; glycerate kinase complement(2976739..2977878) Pseudomonas putida W619 6111641 YP_001749552.1 CDS PputW619_2691 NC_010501.1 2977991 2979088 R PFAM: sugar diacid recognition domain protein; KEGG: pen:PSEEN2879 sugar diacid utilization regulator; transcriptional regulator CdaR complement(2977991..2979088) Pseudomonas putida W619 6111642 YP_001749553.1 CDS PputW619_2692 NC_010501.1 2979252 2980580 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2880 transporter, MFS family; major facilitator transporter 2979252..2980580 Pseudomonas putida W619 6111643 YP_001749554.1 CDS PputW619_2693 NC_010501.1 2980706 2982226 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN3126 ferredoxin reductase component; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2980706..2982226 Pseudomonas putida W619 6111644 YP_001749555.1 CDS PputW619_2694 NC_010501.1 2982319 2984232 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator 2982319..2984232 Pseudomonas putida W619 6111645 YP_001749556.1 CDS PputW619_2695 NC_010501.1 2984312 2985745 R PFAM: Aldehyde Dehydrogenase_; KEGG: dac:Daci_0293 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2984312..2985745) Pseudomonas putida W619 6111646 YP_001749557.1 CDS PputW619_2696 NC_010501.1 2985753 2987933 R KEGG: azo:azo3022 putative quinoprotein ethanol dehydrogenase; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; methanol/ethanol family PQQ-dependent dehydrogenase complement(2985753..2987933) Pseudomonas putida W619 6111647 YP_001749558.1 CDS PputW619_2697 NC_010501.1 2988271 2989368 D FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 2988271..2989368 Pseudomonas putida W619 6111648 YP_001749559.1 CDS PputW619_2698 NC_010501.1 2989453 2990364 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3132 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2989453..2990364) Pseudomonas putida W619 6111649 YP_001749560.1 CDS PputW619_2699 NC_010501.1 2990432 2991133 R PFAM: TraX family protein; KEGG: pmy:Pmen_2245 TraX family protein; TraX family protein complement(2990432..2991133) Pseudomonas putida W619 6111650 YP_001749561.1 CDS PputW619_2700 NC_010501.1 2991137 2992222 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: pen:PSEEN3133 membrane bound hydrolase; membrane-bound metal-dependent hydrolase complement(2991137..2992222) Pseudomonas putida W619 6111651 YP_001749562.1 CDS PputW619_2701 NC_010501.1 2992318 2993568 R PFAM: outer membrane porin; KEGG: pen:PSEEN3134 benzoate-specific porin; outer membrane porin complement(2992318..2993568) Pseudomonas putida W619 6111652 YP_001749563.1 CDS PputW619_2702 NC_010501.1 2993622 2994821 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; KEGG: pen:PSEEN3135 benzoate membrane transport protein MFS superfamily); benzoate transporter complement(2993622..2994821) Pseudomonas putida W619 6111653 YP_001749564.1 CDS PputW619_2703 NC_010501.1 2994953 2995867 R TIGRFAM: catechol 1,2-dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein; KEGG: pen:PSEEN3136 catechol 1,2-dioxygenase; catechol 1,2-dioxygenase complement(2994953..2995867) Pseudomonas putida W619 6111654 YP_001749565.1 CDS PputW619_2704 NC_010501.1 2995907 2996197 R KEGG: pen:PSEEN3137 muconolactone delta-isomerase (MIase); TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase complement(2995907..2996197) Pseudomonas putida W619 6111655 YP_001749566.1 CDS PputW619_2705 NC_010501.1 2996216 2997337 R TIGRFAM: muconate and chloromuconate cycloisomerase; PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pen:PSEEN3138 muconate cycloisomerase I (cis,cis-muconate lactonizing enzyme I) (MLE); muconate and chloromuconate cycloisomerase complement(2996216..2997337) Pseudomonas putida W619 6111656 YP_001749567.1 CDS PputW619_2706 NC_010501.1 2997367 2998689 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3139 benzoate transport protein (MFS superfamily); major facilitator transporter complement(2997367..2998689) Pseudomonas putida W619 6111657 YP_001749568.1 CDS benD NC_010501.1 2998744 2999505 R catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol; 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase complement(2998744..2999505) Pseudomonas putida W619 6111658 YP_001749569.1 CDS PputW619_2708 NC_010501.1 2999674 3000687 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: pen:PSEEN3141 benzoate 1,2-dioxygenase electron transfer component includes: ferredoxin; ferredoxin--NAD(+) reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(2999674..3000687) Pseudomonas putida W619 6111659 YP_001749570.1 CDS PputW619_2709 NC_010501.1 3000758 3001243 R KEGG: pen:PSEEN3142 benzoate 1,2-dioxygenase beta subunit; TIGRFAM: benzoate 1,2-dioxygenase, small subunit; PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; benzoate 1,2-dioxygenase small subunit complement(3000758..3001243) Pseudomonas putida W619 6111660 YP_001749571.1 CDS PputW619_2710 NC_010501.1 3001240 3002598 R TIGRFAM: benzoate 1,2-dioxygenase, large subunit; PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: pen:PSEEN3143 benzoate 1,2-dioxygenase alpha subunit; benzoate 1,2-dioxygenase large subunit complement(3001240..3002598) Pseudomonas putida W619 6111661 YP_001749572.1 CDS PputW619_2711 NC_010501.1 3003250 3004311 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3003250..3004311 Pseudomonas putida W619 6111662 YP_001749573.1 CDS PputW619_2712 NC_010501.1 3004391 3004672 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3151 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3004391..3004672 Pseudomonas putida W619 6111663 YP_001749574.1 CDS PputW619_2713 NC_010501.1 3004785 3006611 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3152 ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3004785..3006611 Pseudomonas putida W619 6111664 YP_001749575.1 CDS PputW619_2714 NC_010501.1 3006608 3007666 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3153 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3006608..3007666 Pseudomonas putida W619 6111665 YP_001749576.1 CDS PputW619_2715 NC_010501.1 3007666 3008682 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3154 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3007666..3008682 Pseudomonas putida W619 6111666 YP_001749577.1 CDS PputW619_2716 NC_010501.1 3008719 3010101 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3155 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 3008719..3010101 Pseudomonas putida W619 6111667 YP_001749578.1 CDS PputW619_2717 NC_010501.1 3010324 3011715 D PFAM: Citrate transporter; KEGG: pen:PSEEN3157 hypothetical protein; citrate transporter 3010324..3011715 Pseudomonas putida W619 6111668 YP_001749579.1 CDS PputW619_2718 NC_010501.1 3011726 3012496 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3011726..3012496 Pseudomonas putida W619 6111669 YP_001749580.1 CDS PputW619_2719 NC_010501.1 3012552 3013031 D serine protease inhibitor, inhibits trypsin and other proteases; ecotin 3012552..3013031 Pseudomonas putida W619 6111670 YP_001749581.1 CDS PputW619_2720 NC_010501.1 3013103 3015064 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 3013103..3015064 Pseudomonas putida W619 6111671 YP_001749582.1 CDS PputW619_2721 NC_010501.1 3015101 3015376 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pen:PSEEN3160 peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase); PpiC-type peptidyl-prolyl cis-trans isomerase 3015101..3015376 Pseudomonas putida W619 6111672 YP_001749583.1 CDS PputW619_2722 NC_010501.1 3015386 3016009 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3162 transporter, LysE family; lysine exporter protein LysE/YggA complement(3015386..3016009) Pseudomonas putida W619 6111673 YP_001749584.1 CDS PputW619_2723 NC_010501.1 3016141 3016962 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3163 transcriptional regulator, AraC family; AraC family transcriptional regulator 3016141..3016962 Pseudomonas putida W619 6111674 YP_001749585.1 CDS PputW619_2724 NC_010501.1 3017050 3017664 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3164 transporter, LysE family; lysine exporter protein LysE/YggA 3017050..3017664 Pseudomonas putida W619 6111675 YP_001749586.1 CDS PputW619_2725 NC_010501.1 3017645 3018337 R PFAM: metallophosphoesterase; KEGG: pen:PSEEN3165 serine/threonine protein phosphatase; metallophosphoesterase complement(3017645..3018337) Pseudomonas putida W619 6111676 YP_001749587.1 CDS PputW619_2726 NC_010501.1 3018579 3019322 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rca:Rcas_0871 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3018579..3019322 Pseudomonas putida W619 6111677 YP_001749588.1 CDS PputW619_2727 NC_010501.1 3019319 3019561 D KEGG: pen:PSEEN3168 hypothetical protein; hypothetical protein 3019319..3019561 Pseudomonas putida W619 6111678 YP_001749589.1 CDS PputW619_2728 NC_010501.1 3019603 3020103 R KEGG: pen:PSEEN3169 methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (O-6-methylguanine-DNA-alkyltransferase); TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase complement(3019603..3020103) Pseudomonas putida W619 6111679 YP_001749590.1 CDS PputW619_2729 NC_010501.1 3020189 3020977 R KEGG: psb:Psyr_2496 lipopolysaccharide core biosynthesis domain protein; lipopolysaccharide core biosynthesis domain-containing protein complement(3020189..3020977) Pseudomonas putida W619 6111680 YP_001749591.1 CDS PputW619_2730 NC_010501.1 3021175 3021372 D hypothetical protein 3021175..3021372 Pseudomonas putida W619 6111681 YP_001749592.1 CDS PputW619_2731 NC_010501.1 3021406 3021774 R KEGG: pfo:Pfl_3288 hypothetical protein; hypothetical protein complement(3021406..3021774) Pseudomonas putida W619 6111682 YP_001749593.1 CDS PputW619_2732 NC_010501.1 3021844 3022221 R KEGG: pen:PSEEN3170 hypothetical protein; hypothetical protein complement(3021844..3022221) Pseudomonas putida W619 6111683 YP_001749594.1 CDS PputW619_2733 NC_010501.1 3022413 3022709 R KEGG: syn:slr0334 hypothetical protein; hypothetical protein complement(3022413..3022709) Pseudomonas putida W619 6111684 YP_001749595.1 CDS PputW619_2734 NC_010501.1 3023211 3023513 R KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein complement(3023211..3023513) Pseudomonas putida W619 6111685 YP_001749596.1 CDS PputW619_2735 NC_010501.1 3023902 3024663 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_2468 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3023902..3024663 Pseudomonas putida W619 6111686 YP_001749597.1 CDS PputW619_2736 NC_010501.1 3024733 3025197 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psa:PST_2264 transcriptional regulator; AraC family transcriptional regulator complement(3024733..3025197) Pseudomonas putida W619 6111687 YP_001749598.1 CDS PputW619_2737 NC_010501.1 3025502 3026239 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_2903 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3025502..3026239) Pseudomonas putida W619 6111688 YP_001749599.1 CDS PputW619_2738 NC_010501.1 3026561 3027469 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA2047 probable transcriptional regulator; AraC family transcriptional regulator 3026561..3027469 Pseudomonas putida W619 6111689 YP_001749600.1 CDS PputW619_2739 NC_010501.1 3027634 3027795 R KEGG: psp:PSPPH_4090 GP28; hypothetical protein complement(3027634..3027795) Pseudomonas putida W619 6111690 YP_001749601.1 CDS PputW619_2740 NC_010501.1 3027792 3029351 R KEGG: psb:Psyr_4084 hypothetical protein; hypothetical protein complement(3027792..3029351) Pseudomonas putida W619 6111691 YP_001749602.1 CDS PputW619_2741 NC_010501.1 3029465 3029734 R KEGG: psb:Psyr_4083 PaaR; hypothetical protein complement(3029465..3029734) Pseudomonas putida W619 6111692 YP_001749603.1 CDS PputW619_2742 NC_010501.1 3029731 3031419 R KEGG: pst:PSPTO_5054 hypothetical protein; hypothetical protein complement(3029731..3031419) Pseudomonas putida W619 6111693 YP_001749604.1 CDS PputW619_2743 NC_010501.1 3031416 3033440 R KEGG: psb:Psyr_4081 hypothetical protein; hypothetical protein complement(3031416..3033440) Pseudomonas putida W619 6111694 YP_001749605.1 CDS PputW619_2744 NC_010501.1 3033437 3035992 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: psb:Psyr_4080 rhs element Vgr protein; ImpA family type VI secretion-associated protein complement(3033437..3035992) Pseudomonas putida W619 6111695 YP_001749606.1 CDS PputW619_2745 NC_010501.1 3036446 3037720 R PFAM: UMUC domain protein DNA-repair protein; KEGG: psp:PSPPH_B0004 RulB protein; DNA-directed DNA polymerase complement(3036446..3037720) Pseudomonas putida W619 6111696 YP_001749607.1 CDS PputW619_2746 NC_010501.1 3037710 3038168 R PFAM: peptidase S24 and S26 domain protein; KEGG: psb:Psyr_2762 peptidase S24, S26A and S26B; peptidase S24/S26 domain-containing protein complement(3037710..3038168) Pseudomonas putida W619 6111697 YP_001749608.1 CDS PputW619_2747 NC_010501.1 3038241 3038960 D PFAM: protein of unknown function DUF159; KEGG: psb:Psyr_2763 protein of unknown function DUF159; hypothetical protein 3038241..3038960 Pseudomonas putida W619 6111698 YP_001749609.1 CDS PputW619_2748 NC_010501.1 3038962 3039309 D hypothetical protein 3038962..3039309 Pseudomonas putida W619 6111699 YP_001749610.1 CDS PputW619_2749 NC_010501.1 3039470 3039691 D KEGG: dac:Daci_1611 integrase family protein; hypothetical protein 3039470..3039691 Pseudomonas putida W619 6111700 YP_001749611.1 CDS PputW619_2750 NC_010501.1 3039712 3041298 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3176 ABC transporte, ATP binding protein; ABC transporter-like protein 3039712..3041298 Pseudomonas putida W619 6111701 YP_001749612.1 CDS PputW619_2751 NC_010501.1 3041485 3042678 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2927 transporter; major facilitator superfamily transporter 3041485..3042678 Pseudomonas putida W619 6111702 YP_001749613.1 CDS PputW619_2752 NC_010501.1 3042738 3043349 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(3042738..3043349) Pseudomonas putida W619 6111703 YP_001749614.1 CDS PputW619_2753 NC_010501.1 3043484 3044386 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2930 transcriptional regulator, LysR family; LysR family transcriptional regulator 3043484..3044386 Pseudomonas putida W619 6111704 YP_001749615.1 CDS PputW619_2754 NC_010501.1 3044379 3044738 D PFAM: protein of unknown function DUF419; KEGG: pen:PSEEN2931 hypothetical protein; hypothetical protein 3044379..3044738 Pseudomonas putida W619 6111705 YP_001749616.1 CDS PputW619_2755 NC_010501.1 3044767 3045204 R PFAM: protein of unknown function DUF1294; KEGG: pen:PSEEN2932 hypothetical protein; hypothetical protein complement(3044767..3045204) Pseudomonas putida W619 6111706 YP_001749617.1 CDS PputW619_2756 NC_010501.1 3045197 3046027 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(3045197..3046027) Pseudomonas putida W619 6111707 YP_001749618.1 CDS PputW619_2757 NC_010501.1 3046328 3047962 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: pen:PSEEN2935 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 3046328..3047962 Pseudomonas putida W619 6111708 YP_001749619.1 CDS PputW619_2758 NC_010501.1 3048089 3049765 D KEGG: pfl:PFL_2485 hypothetical protein; hypothetical protein 3048089..3049765 Pseudomonas putida W619 6111709 YP_001749620.1 CDS PputW619_2759 NC_010501.1 3049811 3051106 R KEGG: pen:PSEEN2936 hypothetical protein; hypothetical protein complement(3049811..3051106) Pseudomonas putida W619 6111710 YP_001749621.1 CDS PputW619_2760 NC_010501.1 3051292 3051870 D TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: pen:PSEEN2937 nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 3051292..3051870 Pseudomonas putida W619 6111711 YP_001749622.1 CDS PputW619_2761 NC_010501.1 3051867 3052418 D KEGG: pen:PSEEN2938 hypothetical protein; hypothetical protein 3051867..3052418 Pseudomonas putida W619 6111712 YP_001749623.1 CDS PputW619_2762 NC_010501.1 3052779 3053153 D KEGG: pen:PSEEN2939 hypothetical protein; hypothetical protein 3052779..3053153 Pseudomonas putida W619 6111713 YP_001749624.1 CDS PputW619_2763 NC_010501.1 3053155 3053733 D KEGG: pen:PSEEN2940 hypothetical protein; hypothetical protein 3053155..3053733 Pseudomonas putida W619 6111714 YP_001749625.1 CDS PputW619_2764 NC_010501.1 3053782 3055269 D KEGG: pen:PSEEN2941 hypothetical protein; hypothetical protein 3053782..3055269 Pseudomonas putida W619 6111715 YP_001749626.1 CDS PputW619_2765 NC_010501.1 3055337 3056017 D PFAM: peptidase C39 bacteriocin processing; KEGG: pen:PSEEN2942 hypothetical protein; peptidase C39 bacteriocin processing 3055337..3056017 Pseudomonas putida W619 6111716 YP_001749627.1 CDS PputW619_2766 NC_010501.1 3056050 3056793 D KEGG: pen:PSEEN2943 hypothetical protein; hypothetical protein 3056050..3056793 Pseudomonas putida W619 6111717 YP_001749628.1 CDS PputW619_2767 NC_010501.1 3056840 3058120 D KEGG: pen:PSEEN2944 hypothetical protein; hypothetical protein 3056840..3058120 Pseudomonas putida W619 6111718 YP_001749629.1 CDS PputW619_2768 NC_010501.1 3058256 3060451 D PFAM: sulfatase; KEGG: pen:PSEEN2945 sulfatase; sulfatase 3058256..3060451 Pseudomonas putida W619 6111719 YP_001749630.1 CDS PputW619_2769 NC_010501.1 3060502 3061827 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2438 sigma-54 dependent transcriptional regulator; sigma-54 dependent trancsriptional regulator complement(3060502..3061827) Pseudomonas putida W619 6111720 YP_001749631.1 CDS PputW619_2770 NC_010501.1 3062170 3062436 D KEGG: pen:PSEEN2436 hypothetical protein; hypothetical protein 3062170..3062436 Pseudomonas putida W619 6111721 YP_001749632.1 CDS PputW619_2771 NC_010501.1 3062550 3063194 R KEGG: pen:PSEEN2435 hypothetical protein; hypothetical protein complement(3062550..3063194) Pseudomonas putida W619 6111722 YP_001749633.1 CDS PputW619_2772 NC_010501.1 3063218 3064219 R KEGG: pen:PSEEN2434 magnesium chelatase, subunit ChII; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase complement(3063218..3064219) Pseudomonas putida W619 6111723 YP_001749634.1 CDS cobN NC_010501.1 3064221 3067982 R with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN complement(3064221..3067982) Pseudomonas putida W619 6111724 YP_001749635.1 CDS PputW619_2774 NC_010501.1 3067986 3069053 R TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN2432 cobalamin biosynthesis protein CobW; cobalamin biosynthesis protein CobW complement(3067986..3069053) Pseudomonas putida W619 6111725 YP_001749636.1 CDS PputW619_2775 NC_010501.1 3069418 3069612 R KEGG: ddi:DDBDRAFT_0201987 hypothetical protein; hypothetical protein complement(3069418..3069612) Pseudomonas putida W619 6111726 YP_001749637.1 CDS PputW619_2776 NC_010501.1 3070593 3070778 D TIGRFAM: cobalt transporter, subunit CbtB; PFAM: Cobalt transporter subunit CbtB putative; KEGG: pen:PSEEN2431 hypothetical protein; cobalt transporter subunit CbtB 3070593..3070778 Pseudomonas putida W619 6111727 YP_001749638.1 CDS PputW619_2777 NC_010501.1 3070788 3071498 D TIGRFAM: cobalt transporter, subunit CbtA; PFAM: Cobalt transporter subunit CbtA putative; KEGG: pen:PSEEN2429 cobalt transporter subunit CbtA; cobalt transporter subunit CbtA 3070788..3071498 Pseudomonas putida W619 6111728 YP_001749639.1 CDS PputW619_2778 NC_010501.1 3071495 3071908 D KEGG: pen:PSEEN2428 cobalamin biosynthesis protein CobE; cobalamin biosynthesis protein CobE 3071495..3071908 Pseudomonas putida W619 6111729 YP_001749640.1 CDS PputW619_2779 NC_010501.1 3071941 3072693 D KEGG: pen:PSEEN2427 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 3071941..3072693 Pseudomonas putida W619 6111730 YP_001749641.1 CDS PputW619_2780 NC_010501.1 3072760 3073002 D PFAM: protein of unknown function DUF1272; KEGG: pen:PSEEN2426 hypothetical protein; hypothetical protein 3072760..3073002 Pseudomonas putida W619 6111731 YP_001749642.1 CDS PputW619_2781 NC_010501.1 3073227 3073841 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN2425 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 3073227..3073841 Pseudomonas putida W619 6111732 YP_001749643.1 CDS PputW619_2782 NC_010501.1 3073855 3077130 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2424 sensor histidine kinase/response regulator; Hpt sensor hybrid histidine kinase 3073855..3077130 Pseudomonas putida W619 6111733 YP_001749644.1 CDS PputW619_2783 NC_010501.1 3077105 3078424 R KEGG: pen:PSEEN2423 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(3077105..3078424) Pseudomonas putida W619 6111734 YP_001749645.1 CDS PputW619_2784 NC_010501.1 3078551 3079570 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pen:PSEEN2422 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(3078551..3079570) Pseudomonas putida W619 6111735 YP_001749646.1 CDS PputW619_2785 NC_010501.1 3079779 3080318 D TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase 3079779..3080318 Pseudomonas putida W619 6111736 YP_001749647.1 CDS PputW619_2786 NC_010501.1 3080432 3081784 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: pen:PSEEN2420 gluconate permease (GntP family); gluconate transporter 3080432..3081784 Pseudomonas putida W619 6111737 YP_001749648.1 CDS PputW619_2787 NC_010501.1 3081869 3082171 D KEGG: pen:PSEEN2419 hypothetical protein; hypothetical protein 3081869..3082171 Pseudomonas putida W619 6111738 YP_001749649.1 CDS PputW619_2788 NC_010501.1 3082248 3083672 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2418 sigma-54 dependent transcriptional regulator, fis family/response regulator; Fis family two component sigma-54 specific transcriptional regulator complement(3082248..3083672) Pseudomonas putida W619 6111739 YP_001749650.1 CDS PputW619_2789 NC_010501.1 3083641 3085137 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2417 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3083641..3085137) Pseudomonas putida W619 6111740 YP_001749651.1 CDS PputW619_2790 NC_010501.1 3085421 3086881 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2416 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3085421..3086881) Pseudomonas putida W619 6111741 YP_001749652.1 CDS PputW619_2791 NC_010501.1 3086991 3087584 R PFAM: Lytic transglycosylase catalytic; KEGG: pen:PSEEN2461 lytic transglycosylase; lytic transglycosylase complement(3086991..3087584) Pseudomonas putida W619 6111742 YP_001749653.1 CDS PputW619_2792 NC_010501.1 3087776 3088201 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN2460 probable type II secretion system protein G; general secretion pathway protein G 3087776..3088201 Pseudomonas putida W619 6111743 YP_001749654.1 CDS PputW619_2793 NC_010501.1 3088213 3089403 D PFAM: type II secretion system protein; KEGG: pen:PSEEN2459 type II secretion pathway protein F; type II secretion system protein 3088213..3089403 Pseudomonas putida W619 6111744 YP_001749655.1 CDS PputW619_2794 NC_010501.1 3089500 3090414 R PFAM: integrase family protein; KEGG: pen:PSEEN2998 site-specific recombinase, phage integrase family; integrase family protein complement(3089500..3090414) Pseudomonas putida W619 6111745 YP_001749656.1 CDS PputW619_2795 NC_010501.1 3090576 3091223 D PFAM: protein of unknown function DUF1345; KEGG: pen:PSEEN3002 hypothetical protein; hypothetical protein 3090576..3091223 Pseudomonas putida W619 6111746 YP_001749657.1 CDS PputW619_2796 NC_010501.1 3091149 3092378 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: pen:PSEEN3003 aspartate aminotransferase; class I/II aminotransferase complement(3091149..3092378) Pseudomonas putida W619 6111747 YP_001749658.1 CDS PputW619_2797 NC_010501.1 3092675 3092935 D PFAM: protein of unknown function DUF1652; KEGG: pen:PSEEN3004 hypothetical protein; hypothetical protein 3092675..3092935 Pseudomonas putida W619 6111748 YP_001749659.1 CDS PputW619_2798 NC_010501.1 3092932 3095019 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: pen:PSEEN2858 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase complement(3092932..3095019) Pseudomonas putida W619 6111749 YP_001749660.1 CDS PputW619_2799 NC_010501.1 3095323 3096810 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN2676 outer membrane protein precursor; RND efflux system outer membrane lipoprotein complement(3095323..3096810) Pseudomonas putida W619 6111750 YP_001749661.1 CDS PputW619_2800 NC_010501.1 3096807 3099914 R PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2675 multidrug resistance efflux pump; acriflavin resistance protein complement(3096807..3099914) Pseudomonas putida W619 6111751 YP_001749662.1 CDS PputW619_2801 NC_010501.1 3099911 3103009 R PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2674 multidrug resistance efflux transporter; acriflavin resistance protein complement(3099911..3103009) Pseudomonas putida W619 6111752 YP_001749663.1 CDS PputW619_2802 NC_010501.1 3103006 3104298 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2673 multidrug resistance efflux pump; membrane fusion protein; RND family efflux transporter MFP subunit complement(3103006..3104298) Pseudomonas putida W619 6111753 YP_001749664.1 CDS PputW619_2803 NC_010501.1 3104616 3105116 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2672 thiol peroxidase; redoxin domain-containing protein complement(3104616..3105116) Pseudomonas putida W619 6111754 YP_001749665.1 CDS PputW619_2804 NC_010501.1 3105285 3106562 R PFAM: Amino acid transporter transmembrane; KEGG: pen:PSEEN2671 serine transport protein; amino acid transporter transmembrane complement(3105285..3106562) Pseudomonas putida W619 6111755 YP_001749666.1 CDS PputW619_2805 NC_010501.1 3106825 3108021 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(3106825..3108021) Pseudomonas putida W619 6111756 YP_001749667.1 CDS PputW619_2806 NC_010501.1 3108152 3109177 R PFAM: Malate/L-lactate dehydrogenase; KEGG: pen:PSEEN2669 malate dehydrogenase; malate/L-lactate dehydrogenase complement(3108152..3109177) Pseudomonas putida W619 6111757 YP_001749668.1 CDS PputW619_2807 NC_010501.1 3109320 3110183 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN2668 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 3109320..3110183 Pseudomonas putida W619 6111758 YP_001749669.1 CDS PputW619_2808 NC_010501.1 3110205 3110957 D PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2667 amino acid ABC transporter, periplasmic binding protein; extracellular solute-binding protein 3110205..3110957 Pseudomonas putida W619 6111759 YP_001749670.1 CDS PputW619_2809 NC_010501.1 3111137 3111856 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2666 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3111137..3111856 Pseudomonas putida W619 6111760 YP_001749671.1 CDS PputW619_2810 NC_010501.1 3111853 3112563 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2665 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 3111853..3112563 Pseudomonas putida W619 6111761 YP_001749672.1 CDS PputW619_2811 NC_010501.1 3112579 3113823 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2664 D-amino acid dehydrogenase, small subunit family protein; FAD dependent oxidoreductase 3112579..3113823 Pseudomonas putida W619 6111762 YP_001749673.1 CDS PputW619_2812 NC_010501.1 3113846 3114628 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2663 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3113846..3114628 Pseudomonas putida W619 6111763 YP_001749674.1 CDS PputW619_2813 NC_010501.1 3114980 3115789 D PFAM: peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I); peptidase C26 3114980..3115789 Pseudomonas putida W619 6111764 YP_001749675.1 CDS PputW619_2814 NC_010501.1 3116169 3117080 D catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 3116169..3117080 Pseudomonas putida W619 6111765 YP_001749676.1 CDS PputW619_2815 NC_010501.1 3117183 3118544 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2657 D-galactonate permease; d-galactonate transporter 3117183..3118544 Pseudomonas putida W619 6111766 YP_001749677.1 CDS PputW619_2816 NC_010501.1 3118622 3120175 D KEGG: pen:PSEEN2656 D-galactarate dehydrogenase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase 3118622..3120175 Pseudomonas putida W619 6111767 YP_001749678.1 CDS PputW619_2817 NC_010501.1 3120293 3121873 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2655 ketoglutarate semialdehyde dehydrogenase; aldehyde dehydrogenase 3120293..3121873 Pseudomonas putida W619 6111768 YP_001749679.1 CDS PputW619_2818 NC_010501.1 3122045 3122794 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN2654 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3122045..3122794) Pseudomonas putida W619 6111769 YP_001749680.1 CDS PputW619_2819 NC_010501.1 3123018 3123668 D KEGG: pen:PSEEN2653 hypothetical protein; hypothetical protein 3123018..3123668 Pseudomonas putida W619 6111770 YP_001749681.1 CDS PputW619_2820 NC_010501.1 3123744 3124073 D KEGG: pen:PSEEN2652 hypothetical protein; hypothetical protein 3123744..3124073 Pseudomonas putida W619 6111771 YP_001749682.1 CDS PputW619_2821 NC_010501.1 3124135 3125055 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pae:PA2681 probable transcriptional regulator; LysR family transcriptional regulator complement(3124135..3125055) Pseudomonas putida W619 6111772 YP_001749683.1 CDS PputW619_2822 NC_010501.1 3125080 3126054 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_5626 alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase complement(3125080..3126054) Pseudomonas putida W619 6111773 YP_001749684.1 CDS PputW619_2823 NC_010501.1 3126164 3127378 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pfl:PFL_6147 YeeE/YedE family protein; hypothetical protein complement(3126164..3127378) Pseudomonas putida W619 6111774 YP_001749685.1 CDS PputW619_2824 NC_010501.1 3127544 3128452 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_4324 transcriptional regulator, LysR family; LysR family transcriptional regulator 3127544..3128452 Pseudomonas putida W619 6111775 YP_001749686.1 CDS PputW619_2825 NC_010501.1 3128453 3128971 R PFAM: protein of unknown function DUF606; KEGG: dac:Daci_4323 protein of unknown function DUF606; hypothetical protein complement(3128453..3128971) Pseudomonas putida W619 6111776 YP_001749687.1 CDS PputW619_2826 NC_010501.1 3129134 3129712 R KEGG: pen:PSEEN2168 hypothetical protein; hypothetical protein complement(3129134..3129712) Pseudomonas putida W619 6111777 YP_001749688.1 CDS PputW619_2827 NC_010501.1 3129788 3131080 R KEGG: psp:PSPPH_1743 L-sorbosone dehydrogenase; L-sorbosone dehydrogenase complement(3129788..3131080) Pseudomonas putida W619 6111778 YP_001749689.1 CDS PputW619_2828 NC_010501.1 3131077 3131505 R KEGG: pst:PSPTO_3688 hypothetical protein; hypothetical protein complement(3131077..3131505) Pseudomonas putida W619 6111779 YP_001749690.1 CDS PputW619_2829 NC_010501.1 3131685 3131984 D KEGG: pfo:Pfl_2311 hypothetical protein; hypothetical protein 3131685..3131984 Pseudomonas putida W619 6111780 YP_001749691.1 CDS PputW619_2830 NC_010501.1 3131981 3132862 R KEGG: pst:PSPTO_1341 hypothetical protein; hypothetical protein complement(3131981..3132862) Pseudomonas putida W619 6111781 YP_001749692.1 CDS PputW619_2831 NC_010501.1 3133002 3133814 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pfo:Pfl_2092 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(3133002..3133814) Pseudomonas putida W619 6111782 YP_001749693.1 CDS PputW619_2832 NC_010501.1 3134036 3136222 R PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: pen:PSEEN3294 hypothetical protein; hypothetical protein complement(3134036..3136222) Pseudomonas putida W619 6111783 YP_001749694.1 CDS PputW619_2833 NC_010501.1 3136491 3136946 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2172 isoquinoline 1-oxidoreductase, alpha subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3136491..3136946 Pseudomonas putida W619 6111784 YP_001749695.1 CDS PputW619_2834 NC_010501.1 3136946 3139195 D PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pen:PSEEN2171 isoquinoline 1-oxidoreductase, beta subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3136946..3139195 Pseudomonas putida W619 6111785 YP_001749696.1 CDS PputW619_2835 NC_010501.1 3139214 3140560 D PFAM: cytochrome c class I; KEGG: pen:PSEEN2170 cytochrome c; gluconate 2-dehydrogenase 3139214..3140560 Pseudomonas putida W619 6111786 YP_001749697.1 CDS PputW619_2836 NC_010501.1 3140574 3141587 D PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN2169 hypothetical protein; hypothetical protein 3140574..3141587 Pseudomonas putida W619 6111787 YP_001749698.1 CDS PputW619_2837 NC_010501.1 3141621 3142436 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN2979 hypothetical protein; extracellular solute-binding protein complement(3141621..3142436) Pseudomonas putida W619 6111788 YP_001749699.1 CDS PputW619_2838 NC_010501.1 3142572 3142892 R hypothetical protein complement(3142572..3142892) Pseudomonas putida W619 6111789 YP_001749700.1 CDS PputW619_2839 NC_010501.1 3143184 3143792 R Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta complement(3143184..3143792) Pseudomonas putida W619 6111790 YP_001749701.1 CDS PputW619_2840 NC_010501.1 3143789 3144688 R Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha complement(3143789..3144688) Pseudomonas putida W619 6111791 YP_001749702.1 CDS PputW619_2841 NC_010501.1 3144738 3146069 R PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSp0995 probable C4-dicarboxylate transport transmembrane protein; sodium:dicarboxylate symporter complement(3144738..3146069) Pseudomonas putida W619 6111792 YP_001749703.1 CDS PputW619_2842 NC_010501.1 3146331 3146804 D KEGG: pfo:Pfl_2136 hypothetical protein; hypothetical protein 3146331..3146804 Pseudomonas putida W619 6111793 YP_001749704.1 CDS PputW619_2843 NC_010501.1 3146811 3147620 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bja:bll6916 hypothetical protein; xylose isomerase domain-containing protein complement(3146811..3147620) Pseudomonas putida W619 6111794 YP_001749705.1 CDS PputW619_2844 NC_010501.1 3147617 3148357 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_0784 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3147617..3148357) Pseudomonas putida W619 6111795 YP_001749706.1 CDS PputW619_2845 NC_010501.1 3148354 3149703 R PFAM: major facilitator superfamily MFS_1; KEGG: bmu:Bmul_3421 major facilitator superfamily MFS_1; major facilitator transporter complement(3148354..3149703) Pseudomonas putida W619 6111796 YP_001749707.1 CDS PputW619_2846 NC_010501.1 3149746 3150573 R PFAM: amidohydrolase 2; KEGG: spe:Spro_2095 amidohydrolase 2; amidohydrolase 2 complement(3149746..3150573) Pseudomonas putida W619 6111797 YP_001749708.1 CDS PputW619_2847 NC_010501.1 3150721 3151674 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_1436 transcriptional regulator, LysR family; LysR family transcriptional regulator 3150721..3151674 Pseudomonas putida W619 6111798 YP_001749709.1 CDS PputW619_2848 NC_010501.1 3151802 3152503 D KEGG: psp:PSPPH_2654 lipoprotein, putative; putative lipoprotein 3151802..3152503 Pseudomonas putida W619 6111799 YP_001749710.1 CDS PputW619_2849 NC_010501.1 3152569 3153048 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN3260 hypothetical protein; isochorismatase hydrolase complement(3152569..3153048) Pseudomonas putida W619 6111800 YP_001749711.1 CDS PputW619_2850 NC_010501.1 3153282 3153680 D KEGG: pen:PSEEN3302 hypothetical protein; hypothetical protein 3153282..3153680 Pseudomonas putida W619 6111801 YP_001749712.1 CDS PputW619_2851 NC_010501.1 3153701 3154447 R KEGG: pen:PSEEN3354 hypothetical protein; hypothetical protein complement(3153701..3154447) Pseudomonas putida W619 6111802 YP_001749713.1 CDS PputW619_2852 NC_010501.1 3154440 3155285 R PFAM: protein of unknown function DUF692; KEGG: pen:PSEEN3355 hypothetical protein; hypothetical protein complement(3154440..3155285) Pseudomonas putida W619 6111803 YP_001749714.1 CDS PputW619_2853 NC_010501.1 3155348 3155869 R KEGG: pen:PSEEN3356 hypothetical protein; hypothetical protein complement(3155348..3155869) Pseudomonas putida W619 6111804 YP_001749715.1 CDS PputW619_2854 NC_010501.1 3156188 3156715 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pst:PSPTO_4652 iron-sulfur cluster-binding protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3156188..3156715 Pseudomonas putida W619 6111805 YP_001749716.1 CDS PputW619_2855 NC_010501.1 3156712 3157713 D PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: psp:PSPPH_4342 oxidoreductase, molybdopterin-binding subunit; molybdopterin dehydrogenase FAD-binding 3156712..3157713 Pseudomonas putida W619 6111806 YP_001749717.1 CDS PputW619_2856 NC_010501.1 3157710 3159911 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pst:PSPTO_4650 aldehyde oxidase and xanthine dehydrogenase family protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3157710..3159911 Pseudomonas putida W619 6111807 YP_001749718.1 CDS PputW619_2857 NC_010501.1 3160007 3161554 R KEGG: bja:blr2180 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; signal transduction histidine kinase complement(3160007..3161554) Pseudomonas putida W619 6111808 YP_001749719.1 CDS PputW619_2858 NC_010501.1 3161705 3162229 R KEGG: pfl:PFL_2959 hypothetical protein; hypothetical protein complement(3161705..3162229) Pseudomonas putida W619 6111809 YP_001749720.1 CDS PputW619_2859 NC_010501.1 3162426 3163283 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psb:Psyr_2411 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3162426..3163283 Pseudomonas putida W619 6111810 YP_001749721.1 CDS PputW619_2860 NC_010501.1 3163324 3163788 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pau:PA14_36520 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 3163324..3163788 Pseudomonas putida W619 6111811 YP_001749722.1 CDS PputW619_2861 NC_010501.1 3163883 3164659 R KEGG: psb:Psyr_0115 hypothetical protein; hypothetical protein complement(3163883..3164659) Pseudomonas putida W619 6111812 YP_001749723.1 CDS PputW619_2862 NC_010501.1 3164753 3165136 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(3164753..3165136) Pseudomonas putida W619 6111813 YP_001749724.1 CDS PputW619_2863 NC_010501.1 3165130 3165309 R KEGG: psp:PSPPH_1250 hypothetical protein; hypothetical protein complement(3165130..3165309) Pseudomonas putida W619 6111814 YP_001749725.1 CDS PputW619_2864 NC_010501.1 3165386 3165586 R PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN3298 hypothetical protein; hypothetical protein complement(3165386..3165586) Pseudomonas putida W619 6111815 YP_001749726.1 CDS PputW619_2865 NC_010501.1 3165700 3167868 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: psa:PST_2508 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(3165700..3167868) Pseudomonas putida W619 6111816 YP_001749727.1 CDS PputW619_2866 NC_010501.1 3168047 3168979 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2387 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3168047..3168979) Pseudomonas putida W619 6111817 YP_001749728.1 CDS PputW619_2867 NC_010501.1 3169105 3169380 D KEGG: pen:PSEEN2386 hypothetical protein; hypothetical protein 3169105..3169380 Pseudomonas putida W619 6111818 YP_001749729.1 CDS PputW619_2868 NC_010501.1 3169382 3170077 R PFAM: protein of unknown function DUF633; KEGG: pen:PSEEN2384 hypothetical protein; hypothetical protein complement(3169382..3170077) Pseudomonas putida W619 6111819 YP_001749730.1 CDS PputW619_2869 NC_010501.1 3170229 3170588 D PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2383 endoribonuclease, L-PSP family; endoribonuclease L-PSP 3170229..3170588 Pseudomonas putida W619 6111820 YP_001749731.1 CDS PputW619_2870 NC_010501.1 3170743 3172743 D PFAM: peptidase U32; KEGG: pen:PSEEN3060 peptidase, U32 family; peptidase U32 3170743..3172743 Pseudomonas putida W619 6111821 YP_001749732.1 CDS PputW619_2871 NC_010501.1 3172811 3174193 R PFAM: aminotransferase class-III; KEGG: pen:PSEEN2885 aminotransferase, class III; putative aminotransferase complement(3172811..3174193) Pseudomonas putida W619 6111822 YP_001749733.1 CDS PputW619_2872 NC_010501.1 3174216 3175706 R PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2886 aldehyde dehydrogenase; aldehyde dehydrogenase complement(3174216..3175706) Pseudomonas putida W619 6111823 YP_001749734.1 CDS PputW619_2873 NC_010501.1 3175776 3176624 R PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2887 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(3175776..3176624) Pseudomonas putida W619 6111824 YP_001749735.1 CDS PputW619_2874 NC_010501.1 3176748 3177659 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_5811 malonate utilization transcriptional regulator; LysR family transcriptional regulator 3176748..3177659 Pseudomonas putida W619 6111825 YP_001749736.1 CDS PputW619_2875 NC_010501.1 3177708 3178472 R TIGRFAM: malonate transporter, MadM subunit; PFAM: malonate/sodium symporter MadM subunit; KEGG: pae:PA0216 probable transporter; signal transduction histidine kinase LytS complement(3177708..3178472) Pseudomonas putida W619 6111826 YP_001749737.1 CDS PputW619_2876 NC_010501.1 3178478 3178879 R TIGRFAM: malonate transporter, MadL subunit; PFAM: malonate transporter MadL subunit; KEGG: pap:PSPA7_0299 malonate transporter, MadL subunit; malonate transporter subunit MadL complement(3178478..3178879) Pseudomonas putida W619 6111827 YP_001749738.1 CDS PputW619_2877 NC_010501.1 3178940 3179860 R TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: psa:PST_4114 malonyl CoA-acyl carrier protein transacylase; malonate decarboxylase subunit epsilon complement(3178940..3179860) Pseudomonas putida W619 6111828 YP_001749739.1 CDS PputW619_2878 NC_010501.1 3179857 3180471 R Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein; phosphoribosyl-dephospho-CoA transferase complement(3179857..3180471) Pseudomonas putida W619 6111829 YP_001749740.1 CDS PputW619_2879 NC_010501.1 3180473 3181264 R TIGRFAM: malonate decarboxylase, gamma subunit; PFAM: malonate decarboxylase gamma subunit; KEGG: psa:PST_4116 malonate decarboxylase gamma subunit; malonate decarboxylase subunit gamma complement(3180473..3181264) Pseudomonas putida W619 6111830 YP_001749741.1 CDS PputW619_2880 NC_010501.1 3181261 3182109 R The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A; malonate decarboxylase subunit beta complement(3181261..3182109) Pseudomonas putida W619 6111831 YP_001749742.1 CDS PputW619_2881 NC_010501.1 3182102 3182401 R acyl carrier protein of malonate decarboxylase; malonate decarboxylase subunit delta complement(3182102..3182401) Pseudomonas putida W619 6111832 YP_001749743.1 CDS PputW619_2882 NC_010501.1 3182403 3183341 R catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase complement(3182403..3183341) Pseudomonas putida W619 6111833 YP_001749744.1 CDS PputW619_2883 NC_010501.1 3183341 3185002 R TIGRFAM: malonate decarboxylase, alpha subunit; KEGG: psa:PST_4120 malonate decarboxylase alpha subunit; malonate decarboxylase subunit alpha complement(3183341..3185002) Pseudomonas putida W619 6111834 YP_001749745.1 CDS PputW619_2884 NC_010501.1 3185286 3186356 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN2888 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 3185286..3186356 Pseudomonas putida W619 6111835 YP_001749746.1 CDS PputW619_2885 NC_010501.1 3186373 3187524 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN2889 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3186373..3187524 Pseudomonas putida W619 6111836 YP_001749747.1 CDS PputW619_2886 NC_010501.1 3187619 3188575 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN3012 benABC operon transcriptional activator BenR; AraC family transcriptional regulator complement(3187619..3188575) Pseudomonas putida W619 6111837 YP_001749748.1 CDS PputW619_2887 NC_010501.1 3188890 3189774 D KEGG: pfo:Pfl_1951 hypothetical protein; hypothetical protein 3188890..3189774 Pseudomonas putida W619 6111838 YP_001749749.1 CDS PputW619_2888 NC_010501.1 3189781 3190569 R KEGG: pfl:PFL_2174 hypothetical protein; hypothetical protein complement(3189781..3190569) Pseudomonas putida W619 6111839 YP_001749750.1 CDS PputW619_2889 NC_010501.1 3190684 3191475 R TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase; histidinol-phosphate phosphatase complement(3190684..3191475) Pseudomonas putida W619 6111840 YP_001749751.1 CDS PputW619_2890 NC_010501.1 3191634 3192524 D PFAM: UspA domain protein; KEGG: pen:PSEEN2890 universal stress protein; UspA domain-containing protein 3191634..3192524 Pseudomonas putida W619 6111841 YP_001749752.1 CDS PputW619_2891 NC_010501.1 3192726 3194861 D TIGRFAM: TonB-dependent siderophore receptor; outer membrane insertion C-terminal signal; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfo:Pfl_2232 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 3192726..3194861 Pseudomonas putida W619 6111842 YP_001749753.1 CDS PputW619_2892 NC_010501.1 3194893 3195414 R KEGG: pen:PSEEN2891 hypothetical protein; hypothetical protein complement(3194893..3195414) Pseudomonas putida W619 6111843 YP_001749754.1 CDS PputW619_2893 NC_010501.1 3195586 3196452 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2894 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3195586..3196452) Pseudomonas putida W619 6111844 YP_001749755.1 CDS PputW619_2894 NC_010501.1 3196558 3197943 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2895 aldehyde dehydrogenase; aldehyde dehydrogenase 3196558..3197943 Pseudomonas putida W619 6111845 YP_001749756.1 CDS PputW619_2895 NC_010501.1 3198092 3200005 R KEGG: pca:Pcar_0793 hypothetical protein; hypothetical protein complement(3198092..3200005) Pseudomonas putida W619 6111846 YP_001749757.1 CDS PputW619_2896 NC_010501.1 3200065 3200973 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN2898 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3200065..3200973) Pseudomonas putida W619 6111847 YP_001749758.1 CDS PputW619_2897 NC_010501.1 3201124 3202482 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN2899 glutamine synthetase; glutamate--putrescine ligase 3201124..3202482 Pseudomonas putida W619 6111848 YP_001749759.1 CDS PputW619_2898 NC_010501.1 3202548 3203636 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2900 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein 3202548..3203636 Pseudomonas putida W619 6111849 YP_001749760.1 CDS PputW619_2899 NC_010501.1 3203651 3204946 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN2901 oxidoreductase; FAD dependent oxidoreductase 3203651..3204946 Pseudomonas putida W619 6111850 YP_001749761.1 CDS PputW619_2900 NC_010501.1 3204948 3206324 R KEGG: pen:PSEEN2454 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(3204948..3206324) Pseudomonas putida W619 6111851 YP_001749762.1 CDS PputW619_2901 NC_010501.1 3206471 3207436 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2453 transcriptional regulator, LysR family; LysR family transcriptional regulator 3206471..3207436 Pseudomonas putida W619 6111852 YP_001749763.1 CDS PputW619_2902 NC_010501.1 3207437 3209098 R PFAM: sulfatase; KEGG: bfs:BF3209 putative sulfatase; sulfatase complement(3207437..3209098) Pseudomonas putida W619 6111853 YP_001749764.1 CDS PputW619_2903 NC_010501.1 3209142 3210560 R KEGG: pen:PSEEN2452 lipopolysaccharide biosynthesis sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(3209142..3210560) Pseudomonas putida W619 6111854 YP_001749765.1 CDS PputW619_2904 NC_010501.1 3210730 3211479 R TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: pen:PSEEN2451 glycosyl transferase, WecB/TagA/CpsF family; WecB/TagA/CpsF family glycosyl transferase complement(3210730..3211479) Pseudomonas putida W619 6111855 YP_001749766.1 CDS PputW619_2905 NC_010501.1 3211480 3212667 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2450 glycosyl transferase, group 2 family protein; glycosyl transferase family protein complement(3211480..3212667) Pseudomonas putida W619 6111856 YP_001749767.1 CDS PputW619_2906 NC_010501.1 3212664 3213866 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN2449 glycosyl transferase, group 1 family protein; glycosyl transferase group 1 protein complement(3212664..3213866) Pseudomonas putida W619 6111857 YP_001749768.1 CDS PputW619_2907 NC_010501.1 3213946 3214911 R PFAM: protein of unknown function DUF535; KEGG: pen:PSEEN2448 glycosyl transferase; hypothetical protein complement(3213946..3214911) Pseudomonas putida W619 6111858 YP_001749769.1 CDS PputW619_2908 NC_010501.1 3214913 3215890 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2447 glycosyl transferase, group 2 family; glycosyl transferase family protein complement(3214913..3215890) Pseudomonas putida W619 6111859 YP_001749770.1 CDS PputW619_2909 NC_010501.1 3215949 3216473 R KEGG: pen:PSEEN2446 serine O-acetyltransferase; serine O-acetyltransferase complement(3215949..3216473) Pseudomonas putida W619 6111860 YP_001749771.1 CDS PputW619_2910 NC_010501.1 3216482 3217438 R PFAM: glycosyl transferase family 2; KEGG: pen:PSEEN2445 glycosyl transferase; glycosyl transferase family protein complement(3216482..3217438) Pseudomonas putida W619 6111861 YP_001749772.1 CDS PputW619_2911 NC_010501.1 3217431 3218048 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pen:PSEEN2444 hypothetical protein; hexapaptide repeat-containing transferase complement(3217431..3218048) Pseudomonas putida W619 6111862 YP_001749773.1 CDS PputW619_2912 NC_010501.1 3218163 3219629 R PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: pen:PSEEN2443 oxidoreductase; GMC oxidoreductase complement(3218163..3219629) Pseudomonas putida W619 6111863 YP_001749774.1 CDS PputW619_2913 NC_010501.1 3219889 3221265 R PFAM: polysaccharide biosynthesis protein; KEGG: pen:PSEEN2442 transporter; polysaccharide biosynthesis protein complement(3219889..3221265) Pseudomonas putida W619 6111864 YP_001749775.1 CDS PputW619_2914 NC_010501.1 3221360 3222886 D KEGG: pen:PSEEN2441 hypothetical protein; hypothetical protein 3221360..3222886 Pseudomonas putida W619 6111865 YP_001749776.1 CDS PputW619_2915 NC_010501.1 3222891 3225491 D KEGG: pen:PSEEN2440 hypothetical protein; hypothetical protein 3222891..3225491 Pseudomonas putida W619 6111866 YP_001749777.1 CDS PputW619_2916 NC_010501.1 3225567 3226529 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pen:PSEEN2439 UDP-glucose 4-epimerase (galactowaldenase) (UDP-galactose 4-epimerase); UDP-glucose 4-epimerase 3225567..3226529 Pseudomonas putida W619 6111867 YP_001749778.1 CDS PputW619_2917 NC_010501.1 3226596 3227402 R KEGG: pen:PSEEN2946 exopolysaccharide biosynthesis related tyrosine-protein kinase; non-specific protein-tyrosine kinase complement(3226596..3227402) Pseudomonas putida W619 6111868 YP_001749779.1 CDS PputW619_2918 NC_010501.1 3227415 3228983 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: pen:PSEEN2947 exopolysaccharide transport protein; lipopolysaccharide biosynthesis protein complement(3227415..3228983) Pseudomonas putida W619 6111869 YP_001749780.1 CDS PputW619_2919 NC_010501.1 3229004 3230080 R KEGG: pen:PSEEN2948 hypothetical protein; hypothetical protein complement(3229004..3230080) Pseudomonas putida W619 6111870 YP_001749781.1 CDS PputW619_2920 NC_010501.1 3230145 3230702 R PFAM: polysaccharide export protein; KEGG: pen:PSEEN2949 polysaccharide export protein; polysaccharide export protein complement(3230145..3230702) Pseudomonas putida W619 6111871 YP_001749782.1 CDS PputW619_2921 NC_010501.1 3231006 3231182 R KEGG: pen:PSEEN2950 hypothetical protein; hypothetical protein complement(3231006..3231182) Pseudomonas putida W619 6111872 YP_001749783.1 CDS PputW619_2922 NC_010501.1 3231521 3232639 R KEGG: pen:PSEEN2951 hypothetical protein; hypothetical protein complement(3231521..3232639) Pseudomonas putida W619 6111873 YP_001749784.1 CDS PputW619_2923 NC_010501.1 3232715 3233863 R KEGG: pen:PSEEN2952 hypothetical protein; hypothetical protein complement(3232715..3233863) Pseudomonas putida W619 6111874 YP_001749785.1 CDS PputW619_2924 NC_010501.1 3234177 3237965 D KEGG: pen:PSEEN2953 hypothetical protein; hypothetical protein 3234177..3237965 Pseudomonas putida W619 6111875 YP_001749786.1 CDS PputW619_2925 NC_010501.1 3237972 3239573 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pen:PSEEN2954 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains); diguanylate cyclase/phosphodiesterase complement(3237972..3239573) Pseudomonas putida W619 6111876 YP_001749787.1 CDS PputW619_2926 NC_010501.1 3239712 3241331 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2956 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 3239712..3241331 Pseudomonas putida W619 6111877 YP_001749788.1 CDS PputW619_2927 NC_010501.1 3241453 3241920 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2957 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3241453..3241920 Pseudomonas putida W619 6111878 YP_001749789.1 CDS PputW619_2928 NC_010501.1 3241984 3243171 D KEGG: pen:PSEEN2958 hypothetical protein; hypothetical protein 3241984..3243171 Pseudomonas putida W619 6111879 YP_001749790.1 CDS PputW619_2929 NC_010501.1 3243267 3244829 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(3243267..3244829) Pseudomonas putida W619 6111880 YP_001749791.1 CDS PputW619_2930 NC_010501.1 3245014 3245445 R PFAM: transmembrane pair domain protein; KEGG: pen:PSEEN2961 hypothetical protein; transmembrane pair domain-containing protein complement(3245014..3245445) Pseudomonas putida W619 6111881 YP_001749792.1 CDS PputW619_2931 NC_010501.1 3245634 3246788 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN2963 UDP-N-acetyl glucosamine-2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3245634..3246788 Pseudomonas putida W619 6111882 YP_001749793.1 CDS nfrB NC_010501.1 3246785 3248959 D PFAM: General secretory system II protein E domain protein; KEGG: pen:PSEEN2964 bacteriophage receptor protein NfrB; bacteriophage N4 adsorption protein B 3246785..3248959 Pseudomonas putida W619 6111883 YP_001749794.1 CDS PputW619_2933 NC_010501.1 3248956 3251958 D KEGG: pen:PSEEN2965 hypothetical protein; bacteriophage N4 receptor, outer membrane subunit 3248956..3251958 Pseudomonas putida W619 6111884 YP_001749795.1 CDS PputW619_2934 NC_010501.1 3251958 3252797 D KEGG: pen:PSEEN2966 hypothetical protein; hypothetical protein 3251958..3252797 Pseudomonas putida W619 6111885 YP_001749796.1 CDS PputW619_2935 NC_010501.1 3252923 3254221 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2968 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3252923..3254221) Pseudomonas putida W619 6111886 YP_001749797.1 CDS PputW619_2936 NC_010501.1 3254228 3254929 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2969 response regulator; two component transcriptional regulator complement(3254228..3254929) Pseudomonas putida W619 6111887 YP_001749798.1 CDS PputW619_2937 NC_010501.1 3255103 3256278 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN2970 multidrug efflux RND membrane fusion protein; RND family efflux transporter MFP subunit 3255103..3256278 Pseudomonas putida W619 6111888 YP_001749799.1 CDS PputW619_2938 NC_010501.1 3256290 3259415 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pen:PSEEN2971 multidrug/solvent RND transporter, AcrB-like; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3256290..3259415 Pseudomonas putida W619 6111889 YP_001749800.1 CDS PputW619_2939 NC_010501.1 3259584 3259853 D KEGG: esa:ESA_04306 hypothetical protein; hypothetical protein 3259584..3259853 Pseudomonas putida W619 6111890 YP_001749801.1 CDS PputW619_2940 NC_010501.1 3259850 3261142 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; PFAM: filamentation induced by cAMP protein Fic; KEGG: esa:ESA_04305 hypothetical protein; molybdopterin-guanine dinucleotide biosynthesis protein A 3259850..3261142 Pseudomonas putida W619 6111891 YP_001749802.1 CDS PputW619_2941 NC_010501.1 3261267 3262940 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(3261267..3262940) Pseudomonas putida W619 6111892 YP_001749803.1 CDS PputW619_2942 NC_010501.1 3263017 3264138 R KEGG: pen:PSEEN2974 quinohemoprotein amine dehydrogenase 40 kDa subunit; quinohemoprotein amine dehydrogenase 40 kDa subunit complement(3263017..3264138) Pseudomonas putida W619 6111893 YP_001749804.1 CDS PputW619_2943 NC_010501.1 3264171 3264494 R PFAM: Quinohemoprotein amine dehydrogenase gamma subunit; KEGG: pen:PSEEN2975 quinohemoprotein amine dehydrogenase gamma subunit; quinohemoprotein amine dehydrogenase subunit gamma complement(3264171..3264494) Pseudomonas putida W619 6111894 YP_001749805.1 CDS PputW619_2944 NC_010501.1 3264496 3265926 R PFAM: Radical SAM domain protein; KEGG: pen:PSEEN2976 hypothetical protein; radical SAM domain-containing protein complement(3264496..3265926) Pseudomonas putida W619 6111895 YP_001749806.1 CDS PputW619_2945 NC_010501.1 3265977 3267605 R PFAM: Quinohemoprotein amine dehydrogenase A alpha subunit haem binding; Domain of unknown function DUF1927; Domain of unknown function DUF1928; KEGG: pen:PSEEN2977 quinohemoprotein amine dehydrogenase 60 kDa subunit; hypothetical protein complement(3265977..3267605) Pseudomonas putida W619 6111896 YP_001749807.1 CDS PputW619_2946 NC_010501.1 3268024 3269517 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN2978 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 3268024..3269517 Pseudomonas putida W619 6111897 YP_001749808.1 CDS PputW619_2947 NC_010501.1 3269629 3270942 D KEGG: pen:PSEEN3112 hypothetical protein; hypothetical protein 3269629..3270942 Pseudomonas putida W619 6111898 YP_001749809.1 CDS PputW619_2948 NC_010501.1 3271044 3272336 R PFAM: monooxygenase FAD-binding; KEGG: pen:PSEEN2817 hypothetical protein; monooxygenase FAD-binding complement(3271044..3272336) Pseudomonas putida W619 6111899 YP_001749810.1 CDS PputW619_2949 NC_010501.1 3272329 3273006 R KEGG: pen:PSEEN2818 hypothetical protein; hypothetical protein complement(3272329..3273006) Pseudomonas putida W619 6111900 YP_001749811.1 CDS PputW619_2950 NC_010501.1 3272996 3274729 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN2819 ABC efflux transporter, permease/ATP-binding protein; ABC transporter-like protein complement(3272996..3274729) Pseudomonas putida W619 6111901 YP_001749812.1 CDS PputW619_2951 NC_010501.1 3274731 3276650 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN2820 sigma-54 dependent transcriptional regulator; Fis family GAF modulated sigma54 specific transcriptional regulator complement(3274731..3276650) Pseudomonas putida W619 6111902 YP_001749813.1 CDS PputW619_2952 NC_010501.1 3276969 3278297 D KEGG: pen:PSEEN2821 hypothetical protein; hypothetical protein 3276969..3278297 Pseudomonas putida W619 6111903 YP_001749814.1 CDS PputW619_2953 NC_010501.1 3278330 3280561 D KEGG: pen:PSEEN2822 hypothetical protein; hypothetical protein 3278330..3280561 Pseudomonas putida W619 6111904 YP_001749815.1 CDS PputW619_2954 NC_010501.1 3280577 3281047 D PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2823 curli fiber surface-exposed nucleator CsgB; curlin-associated protein 3280577..3281047 Pseudomonas putida W619 6111905 YP_001749816.1 CDS PputW619_2955 NC_010501.1 3281064 3282509 D PFAM: Curlin associated repeat protein; KEGG: pen:PSEEN2824 curlin; signal peptide; curlin-associated protein 3281064..3282509 Pseudomonas putida W619 6111906 YP_001749817.1 CDS PputW619_2956 NC_010501.1 3282791 3285208 D TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN2918 quinate dehydrogenase (pyrroloquinoline-quinone); PQQ-dependent dehydrogenase glucose/quinate/shikimate family protein 3282791..3285208 Pseudomonas putida W619 6111907 YP_001749818.1 CDS PputW619_2957 NC_010501.1 3285320 3286588 D PFAM: Carbohydrate-selective porin OprB; KEGG: pfo:Pfl_2711 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 3285320..3286588 Pseudomonas putida W619 6111908 YP_001749819.1 CDS PputW619_2958 NC_010501.1 3286617 3287777 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3286617..3287777) Pseudomonas putida W619 6111909 YP_001749820.1 CDS PputW619_2959 NC_010501.1 3287770 3288447 R PFAM: protein of unknown function DUF1028; KEGG: pen:PSEEN2649 hypothetical protein; hypothetical protein complement(3287770..3288447) Pseudomonas putida W619 6111910 YP_001749821.1 CDS PputW619_2960 NC_010501.1 3288750 3290069 D KEGG: pen:PSEEN2648 oxidoreductase, PNDR family (class II); PNDR family (class II) oxidoreductase 3288750..3290069 Pseudomonas putida W619 6111911 YP_001749822.1 CDS PputW619_2961 NC_010501.1 3290069 3290485 D PFAM: Endoribonuclease L-PSP; KEGG: pen:PSEEN2647 hypothetical protein; endoribonuclease L-PSP 3290069..3290485 Pseudomonas putida W619 6111912 YP_001749823.1 CDS PputW619_2962 NC_010501.1 3290524 3291429 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2103 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3290524..3291429) Pseudomonas putida W619 6111913 YP_001749824.1 CDS PputW619_2963 NC_010501.1 3291617 3292003 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN3005 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3291617..3292003 Pseudomonas putida W619 6111914 YP_001749825.1 CDS PputW619_2964 NC_010501.1 3292080 3292649 D KEGG: pen:PSEEN3006 hypothetical protein; hypothetical protein 3292080..3292649 Pseudomonas putida W619 6111915 YP_001749826.1 CDS PputW619_2965 NC_010501.1 3292715 3294388 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3007 metabolite MFS transporter, MHS family; general substrate transporter complement(3292715..3294388) Pseudomonas putida W619 6111916 YP_001749827.1 CDS PputW619_2966 NC_010501.1 3294594 3295019 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pen:PSEEN2571 ring-cleaving dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3294594..3295019) Pseudomonas putida W619 6111917 YP_001749828.1 CDS PputW619_2967 NC_010501.1 3295085 3296011 R PFAM: alpha/beta hydrolase fold; KEGG: pmy:Pmen_2459 alpha/beta hydrolase fold; alpha/beta hydrolase fold family protein complement(3295085..3296011) Pseudomonas putida W619 6111918 YP_001749829.1 CDS PputW619_2968 NC_010501.1 3296196 3301073 D PFAM: leucine-rich repeat protein; KEGG: pen:PSEEN3009 hypothetical protein; hypothetical protein 3296196..3301073 Pseudomonas putida W619 6111919 YP_001749830.1 CDS PputW619_2969 NC_010501.1 3301081 3303585 R PFAM: UvrD/REP helicase; KEGG: pen:PSEEN3010 helicase; UvrD/REP family; UvrD/REP helicase complement(3301081..3303585) Pseudomonas putida W619 6111920 YP_001749831.1 CDS PputW619_2970 NC_010501.1 3303772 3304470 D PFAM: Pirin domain protein; KEGG: pen:PSEEN3011 hypothetical protein; pirin domain-containing protein 3303772..3304470 Pseudomonas putida W619 6111921 YP_001749832.1 CDS PputW619_2971 NC_010501.1 3304510 3306147 R catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase complement(3304510..3306147) Pseudomonas putida W619 6111922 YP_001749833.1 CDS PputW619_2972 NC_010501.1 3306234 3308495 R PFAM: DEAD_2 domain protein; SMART: Helicase-like, DEXD box c2 type; helicase c2; KEGG: pen:PSEEN2644 hypothetical protein; DEAD/DEAH box helicase complement(3306234..3308495) Pseudomonas putida W619 6111923 YP_001749834.1 CDS PputW619_2973 NC_010501.1 3308492 3310141 R PFAM: VRR-NUC domain protein; KEGG: pen:PSEEN2643 hypothetical protein; VRR-NUC domain-containing protein complement(3308492..3310141) Pseudomonas putida W619 6111924 YP_001749835.1 CDS PputW619_2974 NC_010501.1 3310256 3310747 R PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet0382 probable acetyltransferase; N-acetyltransferase GCN5 complement(3310256..3310747) Pseudomonas putida W619 6111925 YP_001749836.1 CDS PputW619_2975 NC_010501.1 3310810 3312156 R PFAM: regulatory protein GntR HTH; KEGG: pfl:PFL_5228 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(3310810..3312156) Pseudomonas putida W619 6111926 YP_001749837.1 CDS PputW619_2976 NC_010501.1 3312146 3313537 R KEGG: pen:PSEEN2632 hypothetical protein; hypothetical protein complement(3312146..3313537) Pseudomonas putida W619 6111927 YP_001749838.1 CDS PputW619_2977 NC_010501.1 3314143 3315165 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN2630 quinone oxidoreductase; alcohol dehydrogenase complement(3314143..3315165) Pseudomonas putida W619 6111928 YP_001749839.1 CDS PputW619_2978 NC_010501.1 3315371 3316285 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2629 transcriptional regulator, LysR family; LysR family transcriptional regulator 3315371..3316285 Pseudomonas putida W619 6111929 YP_001749840.1 CDS PputW619_2979 NC_010501.1 3316398 3318185 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pfo:Pfl_2732 pyruvate decarboxylase; thiamine pyrophosphate protein 3316398..3318185 Pseudomonas putida W619 6111930 YP_001749841.1 CDS PputW619_2980 NC_010501.1 3318522 3319355 R KEGG: pen:PSEEN2686 hypothetical protein; hypothetical protein complement(3318522..3319355) Pseudomonas putida W619 6111931 YP_001749842.1 CDS PputW619_2981 NC_010501.1 3319358 3319876 R PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2687 hypothetical protein; putative phosphohistidine phosphatase SixA complement(3319358..3319876) Pseudomonas putida W619 6111932 YP_001749843.1 CDS PputW619_2982 NC_010501.1 3320184 3320507 R KEGG: pfo:Pfl_4872 lipoprotein, putative; putative lipoprotein complement(3320184..3320507) Pseudomonas putida W619 6111933 YP_001749844.1 CDS PputW619_2983 NC_010501.1 3320722 3321483 R KEGG: pmy:Pmen_2474 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(3320722..3321483) Pseudomonas putida W619 6111934 YP_001749845.1 CDS PputW619_2984 NC_010501.1 3321652 3322335 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_3091 response regulator receiver:transcriptional regulatory protein, C-terminal; two component transcriptional regulator 3321652..3322335 Pseudomonas putida W619 6111935 YP_001749846.1 CDS PputW619_2985 NC_010501.1 3322597 3324231 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pst:PSPTO_5584 hypothetical protein; sulfatase 3322597..3324231 Pseudomonas putida W619 6111936 YP_001749847.1 CDS PputW619_2986 NC_010501.1 3324437 3324979 R KEGG: acb:A1S_1106 hypothetical protein; hypothetical protein complement(3324437..3324979) Pseudomonas putida W619 6111937 YP_001749848.1 CDS PputW619_2987 NC_010501.1 3325329 3326744 D KEGG: syf:Synpcc7942_1504 hypothetical protein; hypothetical protein 3325329..3326744 Pseudomonas putida W619 6111938 YP_001749849.1 CDS PputW619_2988 NC_010501.1 3326741 3327682 R SMART: extracellular solute-binding protein family 3; KEGG: pmy:Pmen_3255 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(3326741..3327682) Pseudomonas putida W619 6111939 YP_001749850.1 CDS potE NC_010501.1 3327679 3329010 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter complement(3327679..3329010) Pseudomonas putida W619 6111940 YP_001749851.1 CDS PputW619_2990 NC_010501.1 3329694 3331235 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_01670 putative ATP-binding component of ABC transporter; ABC transporter-like protein 3329694..3331235 Pseudomonas putida W619 6111941 YP_001749852.1 CDS PputW619_2991 NC_010501.1 3331248 3332348 D PFAM: inner-membrane translocator; KEGG: pau:PA14_01680 putative permease of ABC transporter; inner-membrane translocator 3331248..3332348 Pseudomonas putida W619 6111942 YP_001749853.1 CDS PputW619_2992 NC_010501.1 3332407 3333333 D PFAM: inner-membrane translocator; KEGG: psb:Psyr_0671 inner-membrane translocator; inner-membrane translocator 3332407..3333333 Pseudomonas putida W619 6111943 YP_001749854.1 CDS PputW619_2993 NC_010501.1 3333446 3334531 D PFAM: basic membrane lipoprotein; KEGG: psb:Psyr_0663 basic membrane lipoprotein; basic membrane lipoprotein 3333446..3334531 Pseudomonas putida W619 6111944 YP_001749855.1 CDS PputW619_2994 NC_010501.1 3334589 3335551 D PFAM: 2OG-Fe(II) oxygenase; KEGG: psa:PST_3080 oxidoreductase, 2OG-Fe(II) oxygenase family; 2OG-Fe(II) oxygenase 3334589..3335551 Pseudomonas putida W619 6111945 YP_001749856.1 CDS PputW619_2995 NC_010501.1 3335563 3336747 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pfl:PFL_3535 peptidase, M20/M25/M40 family; amidohydrolase complement(3335563..3336747) Pseudomonas putida W619 6111946 YP_001749857.1 CDS PputW619_2996 NC_010501.1 3336749 3338050 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3534 proline/betaine transporter; major facilitator transporter complement(3336749..3338050) Pseudomonas putida W619 6111947 YP_001749858.1 CDS PputW619_2997 NC_010501.1 3338429 3339568 D KEGG: bch:Bcen2424_4766 porin, gram-negative type; porin 3338429..3339568 Pseudomonas putida W619 6111948 YP_001749859.1 CDS PputW619_2998 NC_010501.1 3339545 3340483 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_5417 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3339545..3340483) Pseudomonas putida W619 6111949 YP_001749860.1 CDS PputW619_2999 NC_010501.1 3340731 3342272 R PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: pen:PSEEN2739 photolyase; deoxyribodipyrimidine photolyase-like protein complement(3340731..3342272) Pseudomonas putida W619 6111950 YP_001749861.1 CDS PputW619_3000 NC_010501.1 3342266 3342571 R KEGG: pfl:PFL_5334 hypothetical protein; hypothetical protein complement(3342266..3342571) Pseudomonas putida W619 6111951 YP_001749862.1 CDS PputW619_3001 NC_010501.1 3342831 3343220 D KEGG: pen:PSEEN2751 hypothetical protein; hypothetical protein 3342831..3343220 Pseudomonas putida W619 6111952 YP_001749863.1 CDS PputW619_3002 NC_010501.1 3343283 3345436 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN2750 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor 3343283..3345436 Pseudomonas putida W619 6111953 YP_001749864.1 CDS PputW619_3003 NC_010501.1 3345556 3346047 D PFAM: protein of unknown function DUF1543; KEGG: pfl:PFL_2512 hypothetical protein; hypothetical protein 3345556..3346047 Pseudomonas putida W619 6111954 YP_001749865.1 CDS PputW619_3004 NC_010501.1 3346093 3346509 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(3346093..3346509) Pseudomonas putida W619 6111955 YP_001749866.1 CDS PputW619_3005 NC_010501.1 3346705 3348171 D KEGG: bcs:BCAN_B0818 nickel ABC transporter, periplasmic nickel-binding protein; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter substrate-binding protein 3346705..3348171 Pseudomonas putida W619 6111956 YP_001749867.1 CDS PputW619_3006 NC_010501.1 3348173 3349114 D with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 3348173..3349114 Pseudomonas putida W619 6111957 YP_001749868.1 CDS nikC NC_010501.1 3349111 3349956 D with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 3349111..3349956 Pseudomonas putida W619 6111958 YP_001749869.1 CDS nikD NC_010501.1 3349957 3350727 D with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 3349957..3350727 Pseudomonas putida W619 6111959 YP_001749870.1 CDS nikE NC_010501.1 3350724 3351545 D with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 3350724..3351545 Pseudomonas putida W619 6111960 YP_001749871.1 CDS PputW619_3010 NC_010501.1 3351647 3352780 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb1328 GGDEF domain; diguanylate cyclase 3351647..3352780 Pseudomonas putida W619 6111961 YP_001749872.1 CDS PputW619_3011 NC_010501.1 3353096 3354505 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pfl:PFL_2518 domain of unknown function (DUF404) family; hypothetical protein 3353096..3354505 Pseudomonas putida W619 6111962 YP_001749873.1 CDS PputW619_3012 NC_010501.1 3354509 3355459 D PFAM: protein of unknown function DUF403; KEGG: pfl:PFL_2519 hypothetical protein; hypothetical protein 3354509..3355459 Pseudomonas putida W619 6111963 YP_001749874.1 CDS PputW619_3013 NC_010501.1 3355456 3356235 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pfl:PFL_2520 transglutaminase-like superfamily domain protein; transglutaminase domain-containing protein 3355456..3356235 Pseudomonas putida W619 6111964 YP_001749875.1 CDS PputW619_3014 NC_010501.1 3356313 3357047 D KEGG: pae:PA1733 putative proteasome-type protease; putative proteasome-type protease 3356313..3357047 Pseudomonas putida W619 6111965 YP_001749876.1 CDS PputW619_3015 NC_010501.1 3357066 3357626 R KEGG: pnu:Pnuc_0548 hypothetical protein; hypothetical protein complement(3357066..3357626) Pseudomonas putida W619 6111966 YP_001749877.1 CDS PputW619_3016 NC_010501.1 3357741 3358049 D hypothetical protein 3357741..3358049 Pseudomonas putida W619 6111967 YP_001749878.1 CDS PputW619_3017 NC_010501.1 3358098 3359324 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pmy:Pmen_2228 chromate transporter, chromate ion transporter (CHR) family; chromate transporter 3358098..3359324 Pseudomonas putida W619 6111968 YP_001749879.1 CDS PputW619_3018 NC_010501.1 3359299 3360663 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2758 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3359299..3360663) Pseudomonas putida W619 6111969 YP_001749880.1 CDS PputW619_3019 NC_010501.1 3360660 3361322 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2757 DNA-binding response regulator; two component transcriptional regulator complement(3360660..3361322) Pseudomonas putida W619 6111970 YP_001749881.1 CDS PputW619_3020 NC_010501.1 3361325 3361966 R KEGG: pen:PSEEN2756 hypothetical protein; hypothetical protein complement(3361325..3361966) Pseudomonas putida W619 6111971 YP_001749882.1 CDS PputW619_3021 NC_010501.1 3361963 3362769 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2755 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase complement(3361963..3362769) Pseudomonas putida W619 6111972 YP_001749883.1 CDS PputW619_3022 NC_010501.1 3362756 3363436 R KEGG: pen:PSEEN2754 hypothetical protein; hypothetical protein complement(3362756..3363436) Pseudomonas putida W619 6111973 YP_001749884.1 CDS PputW619_3023 NC_010501.1 3363445 3364908 R PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN2753 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase complement(3363445..3364908) Pseudomonas putida W619 6111974 YP_001749885.1 CDS PputW619_3024 NC_010501.1 3364898 3365575 R KEGG: pen:PSEEN2752 hypothetical protein; hypothetical protein complement(3364898..3365575) Pseudomonas putida W619 6111975 YP_001749886.1 CDS PputW619_3025 NC_010501.1 3365810 3366235 D PFAM: Ion transport 2 domain protein; KEGG: pst:PSPTO_1665 hypothetical protein; Ion transport 2 domain-containing protein 3365810..3366235 Pseudomonas putida W619 6111976 YP_001749887.1 CDS PputW619_3026 NC_010501.1 3366344 3366913 D PFAM: GCN5-related N-acetyltransferase; KEGG: pap:PSPA7_6272 hypothetical protein; N-acetyltransferase GCN5 3366344..3366913 Pseudomonas putida W619 6111977 YP_001749888.1 CDS PputW619_3027 NC_010501.1 3366892 3367554 R hypothetical protein complement(3366892..3367554) Pseudomonas putida W619 6111978 YP_001749889.1 CDS PputW619_3028 NC_010501.1 3367574 3368941 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ajs:Ajs_2691 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3367574..3368941) Pseudomonas putida W619 6111979 YP_001749890.1 CDS PputW619_3029 NC_010501.1 3368932 3369858 R PFAM: UspA domain protein; KEGG: pfo:Pfl_3340 universal stress protein family; UspA domain-containing protein complement(3368932..3369858) Pseudomonas putida W619 6111980 YP_001749891.1 CDS PputW619_3030 NC_010501.1 3370043 3370591 D PFAM: GCN5-related N-acetyltransferase; KEGG: pfo:Pfl_3341 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3370043..3370591 Pseudomonas putida W619 6111981 YP_001749892.1 CDS PputW619_3031 NC_010501.1 3370619 3371545 R PFAM: UspA domain protein; KEGG: pfo:Pfl_3347 UspA; UspA domain-containing protein complement(3370619..3371545) Pseudomonas putida W619 6111982 YP_001749893.1 CDS PputW619_3032 NC_010501.1 3371746 3372819 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_3346 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase 3371746..3372819 Pseudomonas putida W619 6111983 YP_001749894.1 CDS PputW619_3033 NC_010501.1 3372901 3373089 D hypothetical protein 3372901..3373089 Pseudomonas putida W619 6111984 YP_001749895.1 CDS PputW619_3034 NC_010501.1 3373091 3373900 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pst:PSPTO_1666 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 3373091..3373900 Pseudomonas putida W619 6111985 YP_001749896.1 CDS PputW619_3035 NC_010501.1 3373958 3374794 D PFAM: UspA domain protein; KEGG: mes:Meso_2248 UspA; UspA domain-containing protein 3373958..3374794 Pseudomonas putida W619 6111986 YP_001749897.1 CDS PputW619_3036 NC_010501.1 3374877 3375821 R PFAM: protein of unknown function RIO1; KEGG: pfl:PFL_0708 hypothetical protein; hypothetical protein complement(3374877..3375821) Pseudomonas putida W619 6111987 YP_001749898.1 CDS PputW619_3037 NC_010501.1 3375859 3376302 R PFAM: transmembrane pair domain protein; KEGG: eca:ECA0906 hypothetical protein; transmembrane pair domain-containing protein complement(3375859..3376302) Pseudomonas putida W619 6111988 YP_001749899.1 CDS PputW619_3040 NC_010501.1 3377326 3378231 R KEGG: pfo:Pfl_1375 hypothetical protein; hypothetical protein complement(3377326..3378231) Pseudomonas putida W619 6111990 YP_001749900.1 CDS PputW619_3041 NC_010501.1 3378228 3379571 R KEGG: pfo:Pfl_1376 hypothetical protein; hypothetical protein complement(3378228..3379571) Pseudomonas putida W619 6111991 YP_001749901.1 CDS PputW619_3042 NC_010501.1 3379749 3380000 D KEGG: pen:PSEEN3318 lipoprotein; lipoprotein 3379749..3380000 Pseudomonas putida W619 6111992 YP_001749902.1 CDS PputW619_3043 NC_010501.1 3380139 3380858 D KEGG: pfl:PFL_1562 lipoprotein, putative; putative lipoprotein 3380139..3380858 Pseudomonas putida W619 6111993 YP_001749903.1 CDS PputW619_3044 NC_010501.1 3380855 3381775 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2646 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3380855..3381775) Pseudomonas putida W619 6111994 YP_001749904.1 CDS PputW619_3045 NC_010501.1 3381902 3382741 D KEGG: psa:PST_1693 hypothetical protein; hypothetical protein 3381902..3382741 Pseudomonas putida W619 6111995 YP_001749905.1 CDS PputW619_3046 NC_010501.1 3382763 3383926 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: psb:Psyr_2176 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase domain-containing protein 3382763..3383926 Pseudomonas putida W619 6111996 YP_001749906.1 CDS PputW619_3047 NC_010501.1 3383937 3385286 D PFAM: MmgE/PrpD family protein; KEGG: pfl:PFL_2649 MmgE/PrpD family protein, putative; MmgE/PrpD family protein 3383937..3385286 Pseudomonas putida W619 6111997 YP_001749907.1 CDS PputW619_3048 NC_010501.1 3385305 3386504 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: psa:PST_1697 putative CaiB/BaiF-family enzyme; L-carnitine dehydratase/bile acid-inducible protein F 3385305..3386504 Pseudomonas putida W619 6111998 YP_001749908.1 CDS PputW619_3049 NC_010501.1 3386501 3387319 D PFAM: HpcH/HpaI aldolase; KEGG: pfl:PFL_2651 citrate lyase, beta subunit; HpcH/HpaI aldolase 3386501..3387319 Pseudomonas putida W619 6111999 YP_001749909.1 CDS PputW619_3050 NC_010501.1 3387440 3388438 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pfl:PFL_2658 C4-dicarboxylate-binding periplasmic protein; TRAP dicarboxylate transporter subunit DctP 3387440..3388438 Pseudomonas putida W619 6112000 YP_001749910.1 CDS PputW619_3051 NC_010501.1 3388507 3389139 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pfl:PFL_2659 C4-dicarboxylate transporter, putative; tripartite ATP-independent periplasmic transporter DctQ 3388507..3389139 Pseudomonas putida W619 6112001 YP_001749911.1 CDS PputW619_3052 NC_010501.1 3389139 3390422 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pfl:PFL_2660 C4-dicarboxylate transport protein; TRAP dicarboxylate transporter subunit DctM 3389139..3390422 Pseudomonas putida W619 6112002 YP_001749912.1 CDS PputW619_3053 NC_010501.1 3390472 3391395 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3046 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3390472..3391395) Pseudomonas putida W619 6112003 YP_001749913.1 CDS PputW619_3054 NC_010501.1 3391398 3393188 R KEGG: pfl:PFL_5184 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(3391398..3393188) Pseudomonas putida W619 6112004 YP_001749914.1 CDS PputW619_3055 NC_010501.1 3393640 3394998 D catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 3393640..3394998 Pseudomonas putida W619 6112005 YP_001749915.1 CDS PputW619_3056 NC_010501.1 3395066 3395797 R KEGG: psb:Psyr_0361 hypothetical protein; hypothetical protein complement(3395066..3395797) Pseudomonas putida W619 6112006 YP_001749916.1 CDS PputW619_3057 NC_010501.1 3395794 3396342 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(3395794..3396342) Pseudomonas putida W619 6112007 YP_001749917.1 CDS PputW619_3058 NC_010501.1 3396448 3396981 R KEGG: pfo:Pfl_3745 hypothetical protein; hypothetical protein complement(3396448..3396981) Pseudomonas putida W619 6112008 YP_001749918.1 CDS PputW619_3059 NC_010501.1 3397109 3398467 R PFAM: Na+/H+ antiporter NhaA; KEGG: bpt:Bpet2421 Na(+)/H(+) antiporter 1; Na+/H+ antiporter NhaA complement(3397109..3398467) Pseudomonas putida W619 6112009 YP_001749919.1 CDS PputW619_3060 NC_010501.1 3398868 3400760 D KEGG: pen:PSEEN2489 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3398868..3400760 Pseudomonas putida W619 6112010 YP_001749920.1 CDS PputW619_3061 NC_010501.1 3400859 3402166 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3030 periplamic phosphate-binding protein; OmpA/MotB domain-containing protein 3400859..3402166 Pseudomonas putida W619 6112011 YP_001749921.1 CDS PputW619_3062 NC_010501.1 3402339 3403403 D PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN3035 hypothetical protein; integral membrane protein TerC 3402339..3403403 Pseudomonas putida W619 6112012 YP_001749922.1 CDS PputW619_3063 NC_010501.1 3403465 3404694 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3343 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3403465..3404694) Pseudomonas putida W619 6112013 YP_001749923.1 CDS PputW619_3064 NC_010501.1 3404834 3405760 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 3404834..3405760 Pseudomonas putida W619 6112014 YP_001749924.1 CDS PputW619_3065 NC_010501.1 3405927 3407081 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN3349 cysteine desulfurase; class V aminotransferase 3405927..3407081 Pseudomonas putida W619 6112015 YP_001749925.1 CDS PputW619_3066 NC_010501.1 3407159 3407812 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase complement(3407159..3407812) Pseudomonas putida W619 6112016 YP_001749926.1 CDS PputW619_3067 NC_010501.1 3407915 3408805 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2306 transcriptional regulator, LysR family; LysR family transcriptional regulator 3407915..3408805 Pseudomonas putida W619 6112017 YP_001749927.1 CDS PputW619_3068 NC_010501.1 3408888 3409718 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN2304 transcriptional regulator, AraC family; AraC family transcriptional regulator 3408888..3409718 Pseudomonas putida W619 6112018 YP_001749928.1 CDS PputW619_3069 NC_010501.1 3409769 3410353 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN2303 transporter, LysE family; lysine exporter protein LysE/YggA 3409769..3410353 Pseudomonas putida W619 6112019 YP_001749929.1 CDS PputW619_3070 NC_010501.1 3410415 3411614 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN2302 sugar exporter, MFS family; sugar efflux transporter complement(3410415..3411614) Pseudomonas putida W619 6112020 YP_001749930.1 CDS PputW619_3071 NC_010501.1 3411836 3412888 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfl:PFL_1816 oxidoreductase, zinc-binding; alcohol dehydrogenase complement(3411836..3412888) Pseudomonas putida W619 6112021 YP_001749931.1 CDS PputW619_3072 NC_010501.1 3413070 3413975 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfo:Pfl_4119 transcriptional regulator, AraC family; AraC family transcriptional regulator 3413070..3413975 Pseudomonas putida W619 6112022 YP_001749932.1 CDS PputW619_3073 NC_010501.1 3414011 3414607 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN2158 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3414011..3414607) Pseudomonas putida W619 6112023 YP_001749933.1 CDS PputW619_3074 NC_010501.1 3414701 3415294 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN2157 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase 3414701..3415294 Pseudomonas putida W619 6112024 YP_001749934.1 CDS PputW619_3075 NC_010501.1 3415302 3415847 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: pen:PSEEN2137 2'-5' RNA ligase; 2'-5' RNA ligase complement(3415302..3415847) Pseudomonas putida W619 6112025 YP_001749935.1 CDS PputW619_3076 NC_010501.1 3416017 3416916 D PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN2136 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase 3416017..3416916 Pseudomonas putida W619 6112026 YP_001749936.1 CDS PputW619_3077 NC_010501.1 3416940 3417509 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2134 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3416940..3417509 Pseudomonas putida W619 6112027 YP_001749937.1 CDS PputW619_3078 NC_010501.1 3417623 3418462 D YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3417623..3418462 Pseudomonas putida W619 6112028 YP_001749938.1 CDS PputW619_3079 NC_010501.1 3418631 3420334 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3418631..3420334 Pseudomonas putida W619 6112029 YP_001749939.1 CDS PputW619_3080 NC_010501.1 3420454 3420651 R KEGG: pap:PSPA7_4876 chemotactic transducer PctA; chemotactic transducer PctA complement(3420454..3420651) Pseudomonas putida W619 6112030 YP_001749940.1 CDS PputW619_3081 NC_010501.1 3420672 3420962 D KEGG: bbr:BB2376 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase-like protein 3420672..3420962 Pseudomonas putida W619 6112031 YP_001749941.1 CDS PputW619_3082 NC_010501.1 3421074 3421385 D KEGG: pmy:Pmen_0222 transcriptional regulator, LysR family; LysR family transcriptional regulator 3421074..3421385 Pseudomonas putida W619 6112032 YP_001749942.1 CDS PputW619_3083 NC_010501.1 3421548 3422057 R PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pap:PSPA7_2621 ProQ activator of osmoprotectant transporter ProP; ProQ activator of osmoprotectant transporter ProP complement(3421548..3422057) Pseudomonas putida W619 6112033 YP_001749943.1 CDS PputW619_3084 NC_010501.1 3422163 3423545 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dac:Daci_1890 transcriptional regulator, GntR family with aminotransferase domain; transcriptional regulator complement(3422163..3423545) Pseudomonas putida W619 6112034 YP_001749944.1 CDS PputW619_3085 NC_010501.1 3423667 3424536 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A2052 protein of unknown function DUF6; hypothetical protein 3423667..3424536 Pseudomonas putida W619 6112035 YP_001749945.1 CDS PputW619_3086 NC_010501.1 3424558 3425013 R hypothetical protein complement(3424558..3425013) Pseudomonas putida W619 6112036 YP_001749946.1 CDS PputW619_3087 NC_010501.1 3425190 3425576 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: smd:Smed_0840 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(3425190..3425576) Pseudomonas putida W619 6112037 YP_001749947.1 CDS PputW619_3088 NC_010501.1 3425929 3426417 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: pst:PSPTO_2866 cupin family protein; cupin 3425929..3426417 Pseudomonas putida W619 6112038 YP_001749948.1 CDS PputW619_3089 NC_010501.1 3426414 3427211 D PFAM: Carboxymuconolactone decarboxylase; KEGG: pst:PSPTO_2865 4-carboxymuconolactone decarboxylase, putative; carboxymuconolactone decarboxylase 3426414..3427211 Pseudomonas putida W619 6112039 YP_001749949.1 CDS PputW619_3090 NC_010501.1 3427356 3428273 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_2864 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3427356..3428273) Pseudomonas putida W619 6112040 YP_001749950.1 CDS PputW619_3091 NC_010501.1 3428872 3429129 R KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein complement(3428872..3429129) Pseudomonas putida W619 6112041 YP_001749951.1 CDS PputW619_3092 NC_010501.1 3429239 3429709 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(3429239..3429709) Pseudomonas putida W619 6112042 YP_001749952.1 CDS PputW619_3093 NC_010501.1 3429749 3430408 R PFAM: carbonic anhydrase; KEGG: pen:PSEEN3600 carbonic anhydrase; carbonate dehydratase complement(3429749..3430408) Pseudomonas putida W619 6112043 YP_001749953.1 CDS PputW619_3094 NC_010501.1 3430519 3431406 D controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; DNA-binding transcriptional regulator CynR 3430519..3431406 Pseudomonas putida W619 6112044 YP_001749954.1 CDS PputW619_3095 NC_010501.1 3431577 3432053 R PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein; hypothetical protein complement(3431577..3432053) Pseudomonas putida W619 6112045 YP_001749955.1 CDS PputW619_3096 NC_010501.1 3432402 3432878 R PFAM: protein of unknown function DUF1348; KEGG: pfl:PFL_3262 hypothetical protein; hypothetical protein complement(3432402..3432878) Pseudomonas putida W619 6112046 YP_001749956.1 CDS PputW619_3097 NC_010501.1 3432939 3433508 R PFAM: regulatory protein TetR; KEGG: xcv:XCV4432 putative transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3432939..3433508) Pseudomonas putida W619 6112047 YP_001749957.1 CDS PputW619_3098 NC_010501.1 3434194 3435210 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN5387 lipase; alpha/beta hydrolase domain-containing protein 3434194..3435210 Pseudomonas putida W619 6112048 YP_001749958.1 CDS PputW619_3099 NC_010501.1 3435338 3435673 R KEGG: psb:Psyr_0096 transposase, IS4; transposase, IS4 complement(3435338..3435673) Pseudomonas putida W619 6112049 YP_001749959.1 CDS PputW619_3100 NC_010501.1 3435738 3436226 R KEGG: psa:PST_0667 hypothetical protein; hypothetical protein complement(3435738..3436226) Pseudomonas putida W619 6112050 YP_001749960.1 CDS PputW619_3101 NC_010501.1 3436844 3437086 D KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3436844..3437086 Pseudomonas putida W619 6112051 YP_001749961.1 CDS PputW619_3102 NC_010501.1 3437231 3437494 D KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 3437231..3437494 Pseudomonas putida W619 6112052 YP_001749962.1 CDS PputW619_3103 NC_010501.1 3437889 3438404 D PFAM: protein of unknown function UPF0157; KEGG: pap:PSPA7_0920 protein YqkA; hypothetical protein 3437889..3438404 Pseudomonas putida W619 6112053 YP_001749963.1 CDS PputW619_3104 NC_010501.1 3438595 3439044 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bcn:Bcen_2902 alkylhydroperoxidase AhpD core; alkylhydroperoxidase complement(3438595..3439044) Pseudomonas putida W619 6112054 YP_001749964.1 CDS PputW619_3105 NC_010501.1 3439156 3439821 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbl:Sbal_4073 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase complement(3439156..3439821) Pseudomonas putida W619 6112055 YP_001749965.1 CDS PputW619_3106 NC_010501.1 3439852 3440334 R PFAM: GCN5-related N-acetyltransferase; KEGG: rme:Rmet_3439 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3439852..3440334) Pseudomonas putida W619 6112056 YP_001749966.1 CDS PputW619_3107 NC_010501.1 3440425 3441861 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: eca:ECA2654 GntR-family transcriptional regulator; transcriptional regulator 3440425..3441861 Pseudomonas putida W619 6112057 YP_001749967.1 CDS PputW619_3108 NC_010501.1 3441854 3442333 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: eca:ECA2655 hypothetical protein; alkylhydroperoxidase complement(3441854..3442333) Pseudomonas putida W619 6112058 YP_001749968.1 CDS PputW619_3109 NC_010501.1 3442727 3443176 R PFAM: GCN5-related N-acetyltransferase; KEGG: pau:PA14_51560 possible acetyltransferase; N-acetyltransferase GCN5 complement(3442727..3443176) Pseudomonas putida W619 6112059 YP_001749969.1 CDS PputW619_3110 NC_010501.1 3443257 3444195 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mgi:Mflv_5240 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(3443257..3444195) Pseudomonas putida W619 6112060 YP_001749970.1 CDS PputW619_3111 NC_010501.1 3444192 3445559 R PFAM: major facilitator superfamily MFS_1; KEGG: bch:Bcen2424_6694 major facilitator superfamily MFS_1; major facilitator transporter complement(3444192..3445559) Pseudomonas putida W619 6112061 YP_001749971.1 CDS PputW619_3112 NC_010501.1 3445644 3447227 R PFAM: Aldehyde Dehydrogenase_; KEGG: pap:PSPA7_3072 probable aldehyde dehydrogenase; aldehyde dehydrogenase complement(3445644..3447227) Pseudomonas putida W619 6112062 YP_001749972.1 CDS PputW619_3113 NC_010501.1 3447329 3448273 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mmw:Mmwyl1_0863 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3447329..3448273) Pseudomonas putida W619 6112063 YP_001749973.1 CDS PputW619_3114 NC_010501.1 3448389 3449570 D KEGG: acb:A1S_1794 hypothetical protein; hypothetical protein 3448389..3449570 Pseudomonas putida W619 6112064 YP_001749974.1 CDS PputW619_3115 NC_010501.1 3449620 3451008 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aau:AAur_2426 putative major facilitator superfamily (MFS) transporter; major facilitator transporter 3449620..3451008 Pseudomonas putida W619 6112065 YP_001749975.1 CDS PputW619_3116 NC_010501.1 3451040 3452827 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3451040..3452827 Pseudomonas putida W619 6112066 YP_001749976.1 CDS PputW619_3117 NC_010501.1 3453021 3453491 R PFAM: regulatory protein MarR; KEGG: bja:bll1047 transcriptional regulatory protein; MarR family transcriptional regulator complement(3453021..3453491) Pseudomonas putida W619 6112067 YP_001749977.1 CDS PputW619_3118 NC_010501.1 3453778 3454731 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin; ferredoxin 3453778..3454731 Pseudomonas putida W619 6112068 YP_001749978.1 CDS PputW619_3119 NC_010501.1 3454768 3455844 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: dac:Daci_1355 Rieske (2Fe-2S) domain protein; vanillate monooxygenase 3454768..3455844 Pseudomonas putida W619 6112069 YP_001749979.1 CDS PputW619_3120 NC_010501.1 3456151 3457485 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pfl:PFL_3480 major facilitator family transporter; major facilitator transporter 3456151..3457485 Pseudomonas putida W619 6112070 YP_001749980.1 CDS PputW619_3121 NC_010501.1 3457520 3458794 D PFAM: outer membrane porin; KEGG: psb:Psyr_2730 outer membrane porin; outer membrane porin 3457520..3458794 Pseudomonas putida W619 6112071 YP_001749981.1 CDS PputW619_3122 NC_010501.1 3459486 3459728 D KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3459486..3459728 Pseudomonas putida W619 6112072 YP_001749982.1 CDS PputW619_3123 NC_010501.1 3459873 3460136 D KEGG: pen:PSEEN1423 hypothetical protein; hypothetical protein 3459873..3460136 Pseudomonas putida W619 6112073 YP_001749983.1 CDS PputW619_3124 NC_010501.1 3461374 3462708 R KEGG: fgr:FG02793.1 hypothetical protein; hypothetical protein complement(3461374..3462708) Pseudomonas putida W619 6112074 YP_001749984.1 CDS PputW619_3125 NC_010501.1 3463042 3463947 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2371 transcriptional regulator, LysR family; LysR family transcriptional regulator 3463042..3463947 Pseudomonas putida W619 6112075 YP_001749985.1 CDS PputW619_3126 NC_010501.1 3464139 3464516 D KEGG: rme:Rmet_4294 protein of unknown function DUF1486; hypothetical protein 3464139..3464516 Pseudomonas putida W619 6112076 YP_001749986.1 CDS PputW619_3127 NC_010501.1 3464649 3465410 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pfo:Pfl_2468 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3464649..3465410 Pseudomonas putida W619 6112077 YP_001749987.1 CDS PputW619_3128 NC_010501.1 3465490 3466047 D PFAM: flavin reductase domain protein FMN-binding; KEGG: scl:sce7817 flavoprotein oxygenases, DIM6/NTAB family; flavin reductase domain-containing protein 3465490..3466047 Pseudomonas putida W619 6112078 YP_001749988.1 CDS PputW619_3129 NC_010501.1 3466065 3466964 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rle:RL1967 putative AraC family transcriptional regulator; AraC family transcriptional regulator complement(3466065..3466964) Pseudomonas putida W619 6112079 YP_001749989.1 CDS PputW619_3130 NC_010501.1 3467173 3467427 R KEGG: ade:Adeh_3207 hypothetical protein; hypothetical protein complement(3467173..3467427) Pseudomonas putida W619 6112080 YP_001749990.1 CDS PputW619_3131 NC_010501.1 3467455 3468192 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_2903 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3467455..3468192) Pseudomonas putida W619 6112081 YP_001749991.1 CDS PputW619_3132 NC_010501.1 3468488 3468919 D PFAM: DoxX family protein; KEGG: pfl:PFL_2372 SURF4 domain protein; DoxX family protein 3468488..3468919 Pseudomonas putida W619 6112082 YP_001749992.1 CDS PputW619_3133 NC_010501.1 3468978 3469901 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_4293 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 3468978..3469901 Pseudomonas putida W619 6112083 YP_001749993.1 CDS PputW619_3134 NC_010501.1 3470150 3470512 D KEGG: pfo:Pfl_3548 hypothetical protein; hypothetical protein 3470150..3470512 Pseudomonas putida W619 6112084 YP_001749994.1 CDS PputW619_3135 NC_010501.1 3470648 3471556 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: pae:PA2047 probable transcriptional regulator; AraC family transcriptional regulator 3470648..3471556 Pseudomonas putida W619 6112085 YP_001749995.1 CDS PputW619_3136 NC_010501.1 3472052 3473185 D KEGG: pen:PSEEN2741 serine-pyruvate transaminase; serine-pyruvate transaminase 3472052..3473185 Pseudomonas putida W619 6112086 YP_001749996.1 CDS PputW619_3137 NC_010501.1 3473246 3474106 R PFAM: SCP-like extracellular; KEGG: pfo:Pfl_2104 allergen V5/TPX-1-like; hypothetical protein complement(3473246..3474106) Pseudomonas putida W619 6112087 YP_001749997.1 CDS PputW619_3138 NC_010501.1 3474392 3475429 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pen:PSEEN2246 diguanylate cyclase (GGDEF domain); GAF sensor-containing diguanylate cyclase 3474392..3475429 Pseudomonas putida W619 6112088 YP_001749998.1 CDS PputW619_3139 NC_010501.1 3475578 3476963 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mms:mma_1240 cytosine deaminase; amidohydrolase complement(3475578..3476963) Pseudomonas putida W619 6112089 YP_001749999.1 CDS PputW619_3140 NC_010501.1 3477001 3478374 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: mms:mma_1239 xanthine permease (NSC2 family); xanthine permease complement(3477001..3478374) Pseudomonas putida W619 6112090 YP_001750000.1 CDS PputW619_3141 NC_010501.1 3478513 3479403 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2721 transcriptional regulator, LysR-family; LysR family transcriptional regulator 3478513..3479403 Pseudomonas putida W619 6112091 YP_001750001.1 CDS PputW619_3142 NC_010501.1 3479424 3479840 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: psa:PST_2526 YeeE/YedE family protein; hypothetical protein complement(3479424..3479840) Pseudomonas putida W619 6112092 YP_001750002.1 CDS PputW619_3143 NC_010501.1 3479843 3480277 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: psa:PST_2527 YeeE/YedE family protein; hypothetical protein complement(3479843..3480277) Pseudomonas putida W619 6112093 YP_001750003.1 CDS PputW619_3144 NC_010501.1 3480372 3481691 R PFAM: beta-lactamase; KEGG: reu:Reut_B4421 6-aminohexanoate-dimer hydrolase; 6-aminohexanoate-dimer hydrolase complement(3480372..3481691) Pseudomonas putida W619 6112094 YP_001750004.1 CDS PputW619_3145 NC_010501.1 3481711 3483564 R PFAM: protein of unknown function DUF1302; KEGG: pmy:Pmen_1720 protein of unknown function DUF1302; hypothetical protein complement(3481711..3483564) Pseudomonas putida W619 6112095 YP_001750005.1 CDS PputW619_3146 NC_010501.1 3483771 3484202 R PFAM: thioesterase superfamily protein; KEGG: pfl:PFL_0291 thioesterase family protein domain protein; thioesterase superfamily protein complement(3483771..3484202) Pseudomonas putida W619 6112096 YP_001750006.1 CDS PputW619_3147 NC_010501.1 3484205 3485368 R PFAM: iron-containing alcohol dehydrogenase; KEGG: psa:PST_0312 probable iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(3484205..3485368) Pseudomonas putida W619 6112097 YP_001750007.1 CDS PputW619_3148 NC_010501.1 3485410 3487197 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pmy:Pmen_0380 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3485410..3487197) Pseudomonas putida W619 6112098 YP_001750008.1 CDS PputW619_3149 NC_010501.1 3487194 3488432 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pfl:PFL_0290 3-hydroxyacyl-CoA dehydrogenase family protein; 3-hydroxybutyryl-CoA epimerase complement(3487194..3488432) Pseudomonas putida W619 6112099 YP_001750009.1 CDS PputW619_3150 NC_010501.1 3488533 3489432 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_0378 transcriptional regulator, LysR family; LysR family transcriptional regulator 3488533..3489432 Pseudomonas putida W619 6112100 YP_001750010.1 CDS PputW619_3151 NC_010501.1 3489534 3491492 D PFAM: beta-lactamase domain protein; KEGG: pmy:Pmen_1715 beta-lactamase domain protein; beta-lactamase domain-containing protein 3489534..3491492 Pseudomonas putida W619 6112101 YP_001750011.1 CDS PputW619_3152 NC_010501.1 3491511 3491810 R KEGG: pmy:Pmen_1717 hypothetical protein; hypothetical protein complement(3491511..3491810) Pseudomonas putida W619 6112102 YP_001750012.1 CDS PputW619_3153 NC_010501.1 3491803 3492189 R PFAM: protein of unknown function DUF202; KEGG: pmy:Pmen_1718 protein of unknown function DUF202; hypothetical protein complement(3491803..3492189) Pseudomonas putida W619 6112103 YP_001750013.1 CDS PputW619_3154 NC_010501.1 3492218 3493564 R PFAM: protein of unknown function DUF1329; KEGG: pmy:Pmen_1719 protein of unknown function DUF1329; hypothetical protein complement(3492218..3493564) Pseudomonas putida W619 6112104 YP_001750014.1 CDS PputW619_3155 NC_010501.1 3493720 3494682 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_1721 transcriptional regulator, LysR family; LysR family transcriptional regulator 3493720..3494682 Pseudomonas putida W619 6112105 YP_001750015.1 CDS PputW619_3156 NC_010501.1 3494667 3495983 R PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1722 major facilitator superfamily MFS_1; major facilitator transporter complement(3494667..3495983) Pseudomonas putida W619 6112106 YP_001750016.1 CDS PputW619_3157 NC_010501.1 3496047 3497210 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pmy:Pmen_1723 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(3496047..3497210) Pseudomonas putida W619 6112107 YP_001750017.1 CDS PputW619_3158 NC_010501.1 3497226 3498773 R PFAM: AMP-dependent synthetase and ligase; KEGG: pmy:Pmen_1724 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3497226..3498773) Pseudomonas putida W619 6112108 YP_001750018.1 CDS PputW619_3159 NC_010501.1 3498980 3499771 D PFAM: extracellular solute-binding protein family 1; KEGG: pfo:Pfl_3511 extracellular solute-binding protein, family 1; extracellular solute-binding protein 3498980..3499771 Pseudomonas putida W619 6112109 YP_001750019.1 CDS PputW619_3160 NC_010501.1 3499807 3501063 R PFAM: outer membrane porin; KEGG: pap:PSPA7_1272 outer membrane porin OprE; outer membrane porin complement(3499807..3501063) Pseudomonas putida W619 6112110 YP_001750020.1 CDS PputW619_3161 NC_010501.1 3501129 3502433 R TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pfl:PFL_2499 citrate transporter; CitMHS family citrate/H+ symporter complement(3501129..3502433) Pseudomonas putida W619 6112111 YP_001750021.1 CDS PputW619_3162 NC_010501.1 3502559 3503875 R PFAM: sodium:dicarboxylate symporter; KEGG: pap:PSPA7_1270 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter complement(3502559..3503875) Pseudomonas putida W619 6112112 YP_001750022.1 CDS PputW619_3163 NC_010501.1 3503953 3505032 R PFAM: protein of unknown function DUF453; KEGG: pap:PSPA7_1269 FldA protein; hypothetical protein complement(3503953..3505032) Pseudomonas putida W619 6112113 YP_001750023.1 CDS PputW619_3164 NC_010501.1 3505180 3506073 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_1268 putative HTH-type transcriptional regulator YbhD; LysR family transcriptional regulator 3505180..3506073 Pseudomonas putida W619 6112114 YP_001750024.1 CDS PputW619_3165 NC_010501.1 3506170 3506949 R PFAM: NLPA lipoprotein; KEGG: aav:Aave_1575 lipoprotein, YaeC family; NLPA lipoprotein complement(3506170..3506949) Pseudomonas putida W619 6112115 YP_001750025.1 CDS solA NC_010501.1 3506946 3508121 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase complement(3506946..3508121) Pseudomonas putida W619 6112116 YP_001750026.1 CDS PputW619_3167 NC_010501.1 3508226 3509470 R PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3762 general substrate transporter:major facilitator superfamily; major facilitator transporter complement(3508226..3509470) Pseudomonas putida W619 6112117 YP_001750027.1 CDS PputW619_3168 NC_010501.1 3509586 3510515 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eca:ECA0922 LysR-family transcriptional regulator; LysR family transcriptional regulator 3509586..3510515 Pseudomonas putida W619 6112118 YP_001750028.1 CDS PputW619_3169 NC_010501.1 3510512 3511459 R PFAM: regulatory protein MerR; KEGG: psa:PST_1977 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(3510512..3511459) Pseudomonas putida W619 6112119 YP_001750029.1 CDS PputW619_3170 NC_010501.1 3511556 3512002 D KEGG: psa:PST_1970 sensory box protein, putative; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3511556..3512002 Pseudomonas putida W619 6112120 YP_001750030.1 CDS PputW619_3171 NC_010501.1 3512104 3512526 D KEGG: pen:PSEEN2706 hypothetical protein; hypothetical protein 3512104..3512526 Pseudomonas putida W619 6112121 YP_001750031.1 CDS PputW619_3172 NC_010501.1 3512523 3513275 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2705 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3512523..3513275 Pseudomonas putida W619 6112122 YP_001750032.1 CDS PputW619_3173 NC_010501.1 3513283 3514530 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pen:PSEEN2704 hypothetical protein; amine oxidase 3513283..3514530 Pseudomonas putida W619 6112123 YP_001750033.1 CDS PputW619_3174 NC_010501.1 3514527 3515339 D PFAM: protein of unknown function DUF1365; KEGG: pen:PSEEN2703 hypothetical protein; hypothetical protein 3514527..3515339 Pseudomonas putida W619 6112124 YP_001750034.1 CDS PputW619_3175 NC_010501.1 3515311 3516573 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN2702 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3515311..3516573 Pseudomonas putida W619 6112125 YP_001750035.1 CDS PputW619_3176 NC_010501.1 3516576 3517064 D KEGG: pen:PSEEN2701 hypothetical protein; hypothetical protein 3516576..3517064 Pseudomonas putida W619 6112126 YP_001750036.1 CDS PputW619_3177 NC_010501.1 3517066 3517602 R KEGG: pen:PSEEN2738 lipoprotein; lipoprotein complement(3517066..3517602) Pseudomonas putida W619 6112127 YP_001750037.1 CDS PputW619_3178 NC_010501.1 3517605 3518159 R KEGG: pen:PSEEN2737 hypothetical protein; hypothetical protein complement(3517605..3518159) Pseudomonas putida W619 6112128 YP_001750038.1 CDS PputW619_3179 NC_010501.1 3518423 3519721 D PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_2345 transporter, putative; major facilitator transporter 3518423..3519721 Pseudomonas putida W619 6112129 YP_001750039.1 CDS PputW619_3180 NC_010501.1 3519830 3520582 R PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN2161 hypothetical protein; integral membrane protein TerC complement(3519830..3520582) Pseudomonas putida W619 6112130 YP_001750040.1 CDS PputW619_3181 NC_010501.1 3520608 3520847 R KEGG: pen:PSEEN2160 lipoprotein; lipoprotein complement(3520608..3520847) Pseudomonas putida W619 6112131 YP_001750041.1 CDS PputW619_3182 NC_010501.1 3520982 3521875 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2159 transcriptional activator, LysR family; LysR family transcriptional regulator 3520982..3521875 Pseudomonas putida W619 6112132 YP_001750042.1 CDS PputW619_3183 NC_010501.1 3521954 3523165 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3521954..3523165 Pseudomonas putida W619 6112133 YP_001750043.1 CDS PputW619_3184 NC_010501.1 3523387 3524034 D PFAM: protein of unknown function DUF480; KEGG: pen:PSEEN2299 hypothetical protein; hypothetical protein 3523387..3524034 Pseudomonas putida W619 6112134 YP_001750044.1 CDS PputW619_3185 NC_010501.1 3524040 3524228 R KEGG: pen:PSEEN2298 hypothetical protein; hypothetical protein complement(3524040..3524228) Pseudomonas putida W619 6112135 YP_001750045.1 CDS PputW619_3186 NC_010501.1 3524284 3525846 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2297 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase subunit F complement(3524284..3525846) Pseudomonas putida W619 6112136 YP_001750046.1 CDS PputW619_3187 NC_010501.1 3525971 3526534 R TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN2296 alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); peroxiredoxin complement(3525971..3526534) Pseudomonas putida W619 6112137 YP_001750047.1 CDS PputW619_3188 NC_010501.1 3526803 3528158 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(3526803..3528158) Pseudomonas putida W619 6112138 YP_001750048.1 CDS PputW619_3189 NC_010501.1 3528257 3529096 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfl:PFL_3399 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase complement(3528257..3529096) Pseudomonas putida W619 6112139 YP_001750049.1 CDS PputW619_3190 NC_010501.1 3529145 3530506 R KEGG: pmy:Pmen_2354 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(3529145..3530506) Pseudomonas putida W619 6112140 YP_001750050.1 CDS PputW619_3191 NC_010501.1 3530607 3531521 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2293 cytochrome c; cytochrome c class I complement(3530607..3531521) Pseudomonas putida W619 6112141 YP_001750051.1 CDS PputW619_3192 NC_010501.1 3531518 3532168 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2292 cytochrome c; cytochrome c class I complement(3531518..3532168) Pseudomonas putida W619 6112142 YP_001750052.1 CDS PputW619_3193 NC_010501.1 3532314 3532673 R KEGG: pen:PSEEN2290 hypothetical protein; hypothetical protein complement(3532314..3532673) Pseudomonas putida W619 6112143 YP_001750053.1 CDS PputW619_3194 NC_010501.1 3532834 3533136 D PFAM: Domain of unknown function DUF1883; KEGG: pen:PSEEN2289 hypothetical protein; hypothetical protein 3532834..3533136 Pseudomonas putida W619 6112144 YP_001750054.1 CDS PputW619_3195 NC_010501.1 3533144 3533314 D KEGG: pen:PSEEN2288 hypothetical protein; hypothetical protein 3533144..3533314 Pseudomonas putida W619 6112145 YP_001750055.1 CDS PputW619_3196 NC_010501.1 3533331 3534407 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN2287 oxidoreductase, 2-nitropropane dioxygenase family; 2-nitropropane dioxygenase 3533331..3534407 Pseudomonas putida W619 6112146 YP_001750056.1 CDS PputW619_3197 NC_010501.1 3534562 3535320 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN2286 molybdate ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3534562..3535320 Pseudomonas putida W619 6112147 YP_001750057.1 CDS PputW619_3198 NC_010501.1 3535320 3536000 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN2285 molybdate ABC transporter, permease protein; molybdate ABC transporter inner membrane subunit 3535320..3536000 Pseudomonas putida W619 6112148 YP_001750058.1 CDS PputW619_3199 NC_010501.1 3536002 3537093 D KEGG: pen:PSEEN2284 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3536002..3537093 Pseudomonas putida W619 6112149 YP_001750059.1 CDS PputW619_3200 NC_010501.1 3537151 3538173 D KEGG: pen:PSEEN2283 DNA topoisomerase IB; DNA topoisomerase 3537151..3538173 Pseudomonas putida W619 6112150 YP_001750060.1 CDS PputW619_3201 NC_010501.1 3538426 3538623 D affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3538426..3538623 Pseudomonas putida W619 6112151 YP_001750061.1 CDS PputW619_3202 NC_010501.1 3538686 3539039 R PFAM: response regulator receiver; KEGG: pen:PSEEN2281 response regulator; response regulator receiver protein complement(3538686..3539039) Pseudomonas putida W619 6112152 YP_001750062.1 CDS PputW619_3203 NC_010501.1 3539051 3540496 R KEGG: pen:PSEEN2280 signal transduction protein; PFAM: Circadian clock protein KaiC central region; KaiA binding; SMART: AAA ATPase; circadian clock protein KaiC complement(3539051..3540496) Pseudomonas putida W619 6112153 YP_001750063.1 CDS PputW619_3204 NC_010501.1 3540502 3541662 R KEGG: pen:PSEEN2279 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3540502..3541662) Pseudomonas putida W619 6112154 YP_001750064.1 CDS PputW619_3205 NC_010501.1 3542152 3542565 D PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein; DoxX family protein 3542152..3542565 Pseudomonas putida W619 6112156 YP_001750065.1 CDS PputW619_3206 NC_010501.1 3542567 3542761 R KEGG: pen:PSEEN2274 hypothetical protein; hypothetical protein complement(3542567..3542761) Pseudomonas putida W619 6112157 YP_001750066.1 CDS PputW619_3207 NC_010501.1 3543012 3543686 D PFAM: Alginate lyase 2; KEGG: pap:PSPA7_2458 alginate lyase superfamily; alginate lyase 2 3543012..3543686 Pseudomonas putida W619 6112158 YP_001750067.1 CDS PputW619_3208 NC_010501.1 3544314 3544589 D hypothetical protein 3544314..3544589 Pseudomonas putida W619 6112159 YP_001750068.1 CDS PputW619_3209 NC_010501.1 3544614 3545510 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bur:Bcep18194_B2464 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3544614..3545510) Pseudomonas putida W619 6112160 YP_001750069.1 CDS PputW619_3210 NC_010501.1 3545676 3546668 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: kpn:KPN_02028 putative NADPH:quinone reductase and related Zn-dependent oxidoreductases; alcohol dehydrogenase complement(3545676..3546668) Pseudomonas putida W619 6112161 YP_001750070.1 CDS PputW619_3211 NC_010501.1 3547329 3548348 R SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease complement(3547329..3548348) Pseudomonas putida W619 6112163 YP_001750071.1 CDS PputW619_3212 NC_010501.1 3548546 3549256 D PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN2270 phosphoglycerate mutase family protein; phosphoglycerate mutase 3548546..3549256 Pseudomonas putida W619 6112164 YP_001750072.1 CDS PputW619_3213 NC_010501.1 3549313 3549630 D PFAM: Sterol-binding domain protein; KEGG: pfo:Pfl_3116 sterol-binding; sterol-binding domain-containing protein 3549313..3549630 Pseudomonas putida W619 6112165 YP_001750073.1 CDS PputW619_3214 NC_010501.1 3549823 3550890 D PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN2268 aminoglycoside aminotranferase; aminoglycoside phosphotransferase 3549823..3550890 Pseudomonas putida W619 6112166 YP_001750074.1 CDS PputW619_3215 NC_010501.1 3550914 3551681 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN2267 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase 3550914..3551681 Pseudomonas putida W619 6112167 YP_001750075.1 CDS PputW619_3216 NC_010501.1 3551775 3552125 R KEGG: pen:PSEEN2264 hypothetical protein; hypothetical protein complement(3551775..3552125) Pseudomonas putida W619 6112168 YP_001750076.1 CDS PputW619_3217 NC_010501.1 3552240 3552542 D KEGG: pfo:Pfl_3509 hypothetical protein; hypothetical protein 3552240..3552542 Pseudomonas putida W619 6112169 YP_001750077.1 CDS PputW619_3218 NC_010501.1 3552544 3553704 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ajs:Ajs_4122 diguanylate cyclase; diguanylate cyclase complement(3552544..3553704) Pseudomonas putida W619 6112170 YP_001750078.1 CDS PputW619_3219 NC_010501.1 3553926 3554108 D KEGG: pen:PSEEN2263 hypothetical protein; hypothetical protein 3553926..3554108 Pseudomonas putida W619 6112171 YP_001750079.1 CDS PputW619_3220 NC_010501.1 3554160 3554546 D PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN2262 hypothetical protein; 17 kDa surface antigen 3554160..3554546 Pseudomonas putida W619 6112172 YP_001750080.1 CDS PputW619_3221 NC_010501.1 3554730 3556559 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN2261 transporter, sodium:sulfate symporter family; citrate transporter 3554730..3556559 Pseudomonas putida W619 6112173 YP_001750081.1 CDS PputW619_3222 NC_010501.1 3556700 3558109 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: pen:PSEEN2260 diguanylate cyclase (GGDEF) domain; diguanylate cyclase 3556700..3558109 Pseudomonas putida W619 6112174 YP_001750082.1 CDS PputW619_3223 NC_010501.1 3558111 3558872 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN2259 hypothetical protein; hypothetical protein complement(3558111..3558872) Pseudomonas putida W619 6112175 YP_001750083.1 CDS PputW619_3224 NC_010501.1 3558972 3559892 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN2258 transcriptional regulator, LysR family; LysR family transcriptional regulator 3558972..3559892 Pseudomonas putida W619 6112176 YP_001750084.1 CDS PputW619_3225 NC_010501.1 3560009 3560203 R KEGG: pen:PSEEN2257 hypothetical protein; hypothetical protein complement(3560009..3560203) Pseudomonas putida W619 6112177 YP_001750085.1 CDS PputW619_3226 NC_010501.1 3560289 3560558 D KEGG: pen:PSEEN2255 hypothetical protein; hypothetical protein 3560289..3560558 Pseudomonas putida W619 6112178 YP_001750086.1 CDS PputW619_3227 NC_010501.1 3561000 3561185 D KEGG: pen:PSEEN2251 hypothetical protein; hypothetical protein 3561000..3561185 Pseudomonas putida W619 6112179 YP_001750087.1 CDS PputW619_3228 NC_010501.1 3561462 3562679 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3561462..3562679 Pseudomonas putida W619 6112180 YP_001750088.1 CDS PputW619_3229 NC_010501.1 3562755 3563168 R PFAM: Class I peptide chain release factor; KEGG: pen:PSEEN2056 protein chain release factor B; peptidyl-tRNA hydrolase domain-containing protein complement(3562755..3563168) Pseudomonas putida W619 6112181 YP_001750089.1 CDS PputW619_3230 NC_010501.1 3563506 3565269 R KEGG: psb:Psyr_2214 PAS; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(3563506..3565269) Pseudomonas putida W619 6112182 YP_001750090.1 CDS PputW619_3231 NC_010501.1 3565595 3566536 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: azo:azo2612 GAF/GGDEF-domain containing protein; GAF sensor-containing diguanylate cyclase complement(3565595..3566536) Pseudomonas putida W619 6112183 YP_001750091.1 CDS PputW619_3232 NC_010501.1 3566533 3567333 R PFAM: EAL domain protein; KEGG: ajs:Ajs_3442 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(3566533..3567333) Pseudomonas putida W619 6112184 YP_001750092.1 CDS PputW619_3234 NC_010501.1 3567955 3568119 R hypothetical protein complement(3567955..3568119) Pseudomonas putida W619 6112186 YP_001750093.1 CDS PputW619_3235 NC_010501.1 3568329 3569330 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_3909 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(3568329..3569330) Pseudomonas putida W619 6112187 YP_001750094.1 CDS PputW619_3236 NC_010501.1 3569438 3570337 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_3910 transcriptional regulator, LysR family; LysR family transcriptional regulator 3569438..3570337 Pseudomonas putida W619 6112188 YP_001750095.1 CDS PputW619_3237 NC_010501.1 3570365 3571195 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pfo:Pfl_3555 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3570365..3571195) Pseudomonas putida W619 6112189 YP_001750096.1 CDS PputW619_3238 NC_010501.1 3571325 3571843 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: pfo:Pfl_3556 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3571325..3571843 Pseudomonas putida W619 6112190 YP_001750097.1 CDS PputW619_3239 NC_010501.1 3571857 3572111 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bpd:BURPS668_0480 glutaredoxin 3; glutaredoxin 3 3571857..3572111 Pseudomonas putida W619 6112191 YP_001750098.1 CDS PputW619_3241 NC_010501.1 3573595 3574746 R PFAM: OmpA/MotB domain protein; ImpA domain protein; KEGG: ses:SARI_02629 hypothetical protein; OmpA/MotB domain-containing protein complement(3573595..3574746) Pseudomonas putida W619 6112193 YP_001750099.1 CDS PputW619_3242 NC_010501.1 3574758 3575204 R TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: ypn:YPN_2490 hypothetical protein; type VI secretion system lysozyme-like protein complement(3574758..3575204) Pseudomonas putida W619 6112194 YP_001750100.1 CDS PputW619_3243 NC_010501.1 3575209 3575745 R KEGG: ypi:YpsIP31758_2487 hypothetical protein; hypothetical protein complement(3575209..3575745) Pseudomonas putida W619 6112195 YP_001750101.1 CDS PputW619_3244 NC_010501.1 3575726 3576823 R TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: plu:plu3224 hypothetical protein; type VI secretion protein complement(3575726..3576823) Pseudomonas putida W619 6112196 YP_001750102.1 CDS PputW619_3245 NC_010501.1 3576787 3578556 R TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: kpn:KPN_03179 hypothetical protein; type VI secretion protein complement(3576787..3578556) Pseudomonas putida W619 6112197 YP_001750103.1 CDS PputW619_3246 NC_010501.1 3578580 3580166 R TIGRFAM: type VI secretion-associated protein, VC_A0119 family; PFAM: ImpA domain protein; KEGG: yps:YPTB1499 hypothetical protein; type VI secretion-associated protein complement(3578580..3580166) Pseudomonas putida W619 6112198 YP_001750104.1 CDS PputW619_3247 NC_010501.1 3580163 3583507 R PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: ypn:YPN_2497 membrane protein; ImcF domain-containing protein complement(3580163..3583507) Pseudomonas putida W619 6112199 YP_001750105.1 CDS PputW619_3248 NC_010501.1 3583517 3584749 R KEGG: ypi:YpsIP31758_0794 hypothetical protein; hypothetical protein complement(3583517..3584749) Pseudomonas putida W619 6112200 YP_001750106.1 CDS PputW619_3249 NC_010501.1 3584753 3585016 R PFAM: PAAR repeat-containing protein; KEGG: ses:SARI_02623 hypothetical protein; PAAR repeat-containing protein complement(3584753..3585016) Pseudomonas putida W619 6112201 YP_001750107.1 CDS PputW619_3250 NC_010501.1 3585204 3585848 R hypothetical protein complement(3585204..3585848) Pseudomonas putida W619 6112202 YP_001750108.1 CDS PputW619_3251 NC_010501.1 3585832 3588627 R KEGG: pmy:Pmen_0108 glycoside hydrolase, family 19; hypothetical protein complement(3585832..3588627) Pseudomonas putida W619 6112203 YP_001750109.1 CDS PputW619_3252 NC_010501.1 3588657 3588917 R PFAM: PAAR repeat-containing protein; KEGG: ses:SARI_02623 hypothetical protein; PAAR repeat-containing protein complement(3588657..3588917) Pseudomonas putida W619 6112204 YP_001750110.1 CDS PputW619_3253 NC_010501.1 3589399 3592068 R KEGG: pmy:Pmen_0108 glycoside hydrolase, family 19; hypothetical protein complement(3589399..3592068) Pseudomonas putida W619 6112205 YP_001750111.1 CDS PputW619_3254 NC_010501.1 3592074 3594437 R TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: ypi:YpsIP31758_0733 type VI secretion system family protein; ImpA family type VI secretion-associated protein complement(3592074..3594437) Pseudomonas putida W619 6112206 YP_001750112.1 CDS PputW619_3255 NC_010501.1 3594440 3597094 R KEGG: ypi:YpsIP31758_2505 ATPase, AAA family; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; type VI secretion ATPase complement(3594440..3597094) Pseudomonas putida W619 6112207 YP_001750113.1 CDS PputW619_3256 NC_010501.1 3597244 3597747 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796; KEGG: ypi:YpsIP31758_2506 hypothetical protein; Hcp1 family type VI secretion system effector complement(3597244..3597747) Pseudomonas putida W619 6112208 YP_001750114.1 CDS PputW619_3257 NC_010501.1 3597764 3599494 R PFAM: OmpA/MotB domain protein; KEGG: plu:plu3255 hypothetical protein; OmpA/MotB domain-containing protein complement(3597764..3599494) Pseudomonas putida W619 6112209 YP_001750115.1 CDS PputW619_3258 NC_010501.1 3599500 3600168 R KEGG: ecc:c3388 hypothetical protein; hypothetical protein complement(3599500..3600168) Pseudomonas putida W619 6112210 YP_001750116.1 CDS PputW619_3259 NC_010501.1 3600177 3601532 R TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: plu:plu4226 hypothetical protein; type VI secretion protein complement(3600177..3601532) Pseudomonas putida W619 6112211 YP_001750117.1 CDS PputW619_3260 NC_010501.1 3601556 3603094 R TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: ypi:YpsIP31758_2510 hypothetical protein; EvpB family type VI secretion protein complement(3601556..3603094) Pseudomonas putida W619 6112212 YP_001750118.1 CDS PputW619_3261 NC_010501.1 3603129 3603632 R TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: ypp:YPDSF_1511 hypothetical protein; type VI secretion protein complement(3603129..3603632) Pseudomonas putida W619 6112213 YP_001750119.1 CDS PputW619_3262 NC_010501.1 3604429 3604800 D PFAM: IstB domain protein ATP-binding protein; KEGG: pst:PSPTO_2842 ISPsy14, transposition helper protein; IstB ATP binding domain-containing protein 3604429..3604800 Pseudomonas putida W619 6112214 YP_001750120.1 CDS PputW619_3265 NC_010501.1 3606401 3606670 R KEGG: pen:PSEEN3022 hypothetical protein; hypothetical protein complement(3606401..3606670) Pseudomonas putida W619 6112216 YP_001750121.1 CDS PputW619_3267 NC_010501.1 3607364 3607513 R hypothetical protein complement(3607364..3607513) Pseudomonas putida W619 6112218 YP_001750122.1 CDS PputW619_3268 NC_010501.1 3607817 3609046 R PFAM: major facilitator superfamily MFS_1; KEGG: pap:PSPA7_3647 probable MFS transporter; major facilitator transporter complement(3607817..3609046) Pseudomonas putida W619 6112219 YP_001750123.1 CDS PputW619_3269 NC_010501.1 3609128 3610339 R PFAM: creatinase; peptidase M24; KEGG: pfl:PFL_5299 creatinase; peptidase M24 complement(3609128..3610339) Pseudomonas putida W619 6112220 YP_001750124.1 CDS PputW619_3270 NC_010501.1 3610656 3611048 R KEGG: bpl:BURPS1106A_A1931 transcriptional regulator, AraC family; hypothetical protein complement(3610656..3611048) Pseudomonas putida W619 6112221 YP_001750125.1 CDS PputW619_3271 NC_010501.1 3611135 3612223 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dsh:Dshi_2120 ABC transporter related; ABC transporter-like protein complement(3611135..3612223) Pseudomonas putida W619 6112222 YP_001750126.1 CDS PputW619_3272 NC_010501.1 3612252 3613061 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsh:Dshi_2121 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3612252..3613061) Pseudomonas putida W619 6112223 YP_001750127.1 CDS PputW619_3273 NC_010501.1 3613058 3613975 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1022 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3613058..3613975) Pseudomonas putida W619 6112224 YP_001750128.1 CDS PputW619_3274 NC_010501.1 3614000 3615127 R PFAM: extracellular solute-binding protein family 1; KEGG: pde:Pden_1021 spermidine/putrescine ABC transporter, periplasmic binding protein, putative; extracellular solute-binding protein complement(3614000..3615127) Pseudomonas putida W619 6112225 YP_001750129.1 CDS PputW619_3275 NC_010501.1 3615443 3616225 D PFAM: Creatininase; KEGG: pde:Pden_1019 creatininase; creatininase 3615443..3616225 Pseudomonas putida W619 6112226 YP_001750130.1 CDS PputW619_3276 NC_010501.1 3616299 3617684 D TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: pae:PA0129 gamma-aminobutyrate permease; GABA permease 3616299..3617684 Pseudomonas putida W619 6112227 YP_001750131.1 CDS PputW619_3277 NC_010501.1 3617882 3618901 D PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: csa:Csal_0987 transcriptional regulator, AraC family; AraC family transcriptional regulator 3617882..3618901 Pseudomonas putida W619 6112228 YP_001750132.1 CDS PputW619_3278 NC_010501.1 3619154 3620371 R KEGG: bmn:BMA10247_A1832 putative purine catabolism transcriptional regulator; PucR family transcriptional regulator complement(3619154..3620371) Pseudomonas putida W619 6112229 YP_001750133.1 CDS PputW619_3279 NC_010501.1 3620790 3621179 R KEGG: pst:PSPTO_1571 hypothetical protein; hypothetical protein complement(3620790..3621179) Pseudomonas putida W619 6112230 YP_001750134.1 CDS PputW619_3280 NC_010501.1 3621294 3622151 R PFAM: chemotaxis sensory transducer; KEGG: pfo:Pfl_0378 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3621294..3622151) Pseudomonas putida W619 6112231 YP_001750135.1 CDS PputW619_3281 NC_010501.1 3622715 3624970 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bbr:BB3874 high-affinity choline transport protein; choline/carnitine/betaine transporter complement(3622715..3624970) Pseudomonas putida W619 6112232 YP_001750136.1 CDS PputW619_3282 NC_010501.1 3625445 3626407 R KEGG: pol:Bpro_3874 putative hemagglutinin-related protein; 3-carboxymuconate cyclase-like protein complement(3625445..3626407) Pseudomonas putida W619 6112233 YP_001750137.1 CDS PputW619_3283 NC_010501.1 3626587 3626883 R KEGG: pen:PSEEN4363 porin, OprD family; hypothetical protein complement(3626587..3626883) Pseudomonas putida W619 6112234 YP_001750138.1 CDS PputW619_3284 NC_010501.1 3627474 3628211 D KEGG: pfo:Pfl_2992 hypothetical protein; hypothetical protein 3627474..3628211 Pseudomonas putida W619 6112235 YP_001750139.1 CDS PputW619_3285 NC_010501.1 3628325 3628540 D PFAM: Prophage CP4-57 regulatory; KEGG: pfo:Pfl_2993 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 3628325..3628540 Pseudomonas putida W619 6112236 YP_001750140.1 CDS PputW619_3286 NC_010501.1 3628543 3629433 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pfo:Pfl_2994 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 3628543..3629433 Pseudomonas putida W619 6112237 YP_001750141.1 CDS PputW619_3287 NC_010501.1 3629437 3630936 D KEGG: pfo:Pfl_2995 hypothetical protein; hypothetical protein 3629437..3630936 Pseudomonas putida W619 6112238 YP_001750142.1 CDS PputW619_3288 NC_010501.1 3630953 3631504 D KEGG: pfo:Pfl_2996 hypothetical protein; hypothetical protein 3630953..3631504 Pseudomonas putida W619 6112239 YP_001750143.1 CDS PputW619_3289 NC_010501.1 3631498 3632715 D KEGG: pfo:Pfl_2997 hypothetical protein; hypothetical protein 3631498..3632715 Pseudomonas putida W619 6112240 YP_001750144.1 CDS PputW619_3290 NC_010501.1 3632867 3633622 D PFAM: Domain of unknown function DUF1845; KEGG: pfo:Pfl_2998 hypothetical protein; hypothetical protein 3632867..3633622 Pseudomonas putida W619 6112241 YP_001750145.1 CDS PputW619_3291 NC_010501.1 3633619 3634113 D KEGG: pfo:Pfl_2999 hypothetical protein; hypothetical protein 3633619..3634113 Pseudomonas putida W619 6112242 YP_001750146.1 CDS PputW619_3292 NC_010501.1 3634119 3634547 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3634119..3634547 Pseudomonas putida W619 6112243 YP_001750147.1 CDS PputW619_3293 NC_010501.1 3634642 3634869 R hypothetical protein complement(3634642..3634869) Pseudomonas putida W619 6112244 YP_001750148.1 CDS PputW619_3294 NC_010501.1 3635010 3635354 D PFAM: helix-turn-helix domain protein; KEGG: cvi:CV_1213 hypothetical protein; XRE family transcriptional regulator 3635010..3635354 Pseudomonas putida W619 6112245 YP_001750149.1 CDS PputW619_3295 NC_010501.1 3635452 3637419 D KEGG: pfo:Pfl_3001 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 3635452..3637419 Pseudomonas putida W619 6112246 YP_001750150.1 CDS PputW619_3296 NC_010501.1 3638161 3638691 D KEGG: pfo:Pfl_3003 hypothetical protein; hypothetical protein 3638161..3638691 Pseudomonas putida W619 6112247 YP_001750151.1 CDS PputW619_3297 NC_010501.1 3638759 3639016 D KEGG: pfo:Pfl_3004 hypothetical protein; hypothetical protein 3638759..3639016 Pseudomonas putida W619 6112248 YP_001750152.1 CDS PputW619_3298 NC_010501.1 3639084 3639578 D PFAM: DNA repair protein RadC; KEGG: pfo:Pfl_3005 DNA repair protein RadC; DNA repair protein RadC 3639084..3639578 Pseudomonas putida W619 6112249 YP_001750153.1 CDS PputW619_3299 NC_010501.1 3639644 3640360 D KEGG: pfo:Pfl_3006 hypothetical protein; hypothetical protein 3639644..3640360 Pseudomonas putida W619 6112250 YP_001750154.1 CDS PputW619_3300 NC_010501.1 3640491 3641006 D KEGG: spe:Spro_0320 type IV B pilus protein; type IV B pilus protein 3640491..3641006 Pseudomonas putida W619 6112251 YP_001750155.1 CDS PputW619_3301 NC_010501.1 3641003 3641674 D KEGG: pfo:Pfl_3008 hypothetical protein; hypothetical protein 3641003..3641674 Pseudomonas putida W619 6112252 YP_001750156.1 CDS PputW619_3302 NC_010501.1 3641685 3642404 D KEGG: pfo:Pfl_3009 hypothetical protein; hypothetical protein 3641685..3642404 Pseudomonas putida W619 6112253 YP_001750157.1 CDS PputW619_3303 NC_010501.1 3642386 3642940 D PFAM: Lytic transglycosylase catalytic; KEGG: pfo:Pfl_3010 lytic transglycosylase, catalytic; lytic transglycosylase 3642386..3642940 Pseudomonas putida W619 6112254 YP_001750158.1 CDS PputW619_3304 NC_010501.1 3642937 3643356 D KEGG: pfo:Pfl_3011 hypothetical protein; hypothetical protein 3642937..3643356 Pseudomonas putida W619 6112255 YP_001750159.1 CDS PputW619_3305 NC_010501.1 3643366 3645489 D KEGG: pfo:Pfl_3012 hypothetical protein; hypothetical protein 3643366..3645489 Pseudomonas putida W619 6112256 YP_001750160.1 CDS PputW619_3306 NC_010501.1 3645588 3646256 D KEGG: pfo:Pfl_3013 hypothetical protein; hypothetical protein 3645588..3646256 Pseudomonas putida W619 6112257 YP_001750161.1 CDS PputW619_3307 NC_010501.1 3646633 3647175 R PFAM: cytochrome B561; KEGG: pfo:Pfl_3348 cytochrome b561; cytochrome B561 complement(3646633..3647175) Pseudomonas putida W619 6112258 YP_001750162.1 CDS PputW619_3308 NC_010501.1 3647343 3648707 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN2758 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3647343..3648707) Pseudomonas putida W619 6112259 YP_001750163.1 CDS PputW619_3309 NC_010501.1 3648704 3649366 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN2757 DNA-binding response regulator; two component transcriptional regulator complement(3648704..3649366) Pseudomonas putida W619 6112260 YP_001750164.1 CDS PputW619_3310 NC_010501.1 3649369 3650010 R KEGG: pen:PSEEN2756 hypothetical protein; hypothetical protein complement(3649369..3650010) Pseudomonas putida W619 6112261 YP_001750165.1 CDS PputW619_3311 NC_010501.1 3650007 3650813 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN2755 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase complement(3650007..3650813) Pseudomonas putida W619 6112262 YP_001750166.1 CDS PputW619_3312 NC_010501.1 3650800 3651480 R PFAM: Haem oxygenase; KEGG: pen:PSEEN2754 hypothetical protein; heme oxygenase complement(3650800..3651480) Pseudomonas putida W619 6112263 YP_001750167.1 CDS PputW619_3313 NC_010501.1 3651489 3652952 R PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN2753 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase complement(3651489..3652952) Pseudomonas putida W619 6112264 YP_001750168.1 CDS PputW619_3314 NC_010501.1 3652942 3653619 R KEGG: pen:PSEEN2752 hypothetical protein; hypothetical protein complement(3652942..3653619) Pseudomonas putida W619 6112265 YP_001750169.1 CDS PputW619_3315 NC_010501.1 3654060 3655307 R PFAM: transposase mutator type; KEGG: psp:PSPPH_4836 ISPsy18, transposase; transposase mutator type complement(3654060..3655307) Pseudomonas putida W619 6112266 YP_001750170.1 CDS PputW619_3316 NC_010501.1 3655440 3656204 R hypothetical protein complement(3655440..3656204) Pseudomonas putida W619 6112267 YP_001750171.1 CDS PputW619_3317 NC_010501.1 3656475 3657911 D PFAM: transposase IS4 family protein; KEGG: psa:PST_0668 ISPsy6, transposase; transposase IS4 family protein 3656475..3657911 Pseudomonas putida W619 6112268 YP_001750172.1 CDS PputW619_3318 NC_010501.1 3658267 3659304 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azc:AZC_3049 transcriptional regulator; AraC family transcriptional regulator complement(3658267..3659304) Pseudomonas putida W619 6112269 YP_001750173.1 CDS PputW619_3319 NC_010501.1 3659346 3661019 D PFAM: serine dehydratase alpha chain; KEGG: rba:RB8979 probable L-serine dehydratase, alpha chain; L-serine ammonia-lyase 3659346..3661019 Pseudomonas putida W619 6112270 YP_001750174.1 CDS PputW619_3320 NC_010501.1 3661023 3662033 D PFAM: proline racemase; KEGG: bmu:Bmul_5268 proline racemase; proline racemase 3661023..3662033 Pseudomonas putida W619 6112271 YP_001750175.1 CDS PputW619_3321 NC_010501.1 3662167 3663486 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sen:SACE_4846 putative benzoate transport protein (MFS family); major facilitator transporter 3662167..3663486 Pseudomonas putida W619 6112272 YP_001750176.1 CDS PputW619_3322 NC_010501.1 3663871 3664206 D PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: pfo:Pfl_3015 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein 3663871..3664206 Pseudomonas putida W619 6112273 YP_001750177.1 CDS PputW619_3323 NC_010501.1 3664193 3664432 D KEGG: pfo:Pfl_3016 hypothetical protein; hypothetical protein 3664193..3664432 Pseudomonas putida W619 6112274 YP_001750178.1 CDS PputW619_3324 NC_010501.1 3664448 3664825 D KEGG: pfo:Pfl_3017 hypothetical protein; hypothetical protein 3664448..3664825 Pseudomonas putida W619 6112275 YP_001750179.1 CDS PputW619_3325 NC_010501.1 3664833 3665234 D KEGG: pfo:Pfl_3018 hypothetical protein; hypothetical protein 3664833..3665234 Pseudomonas putida W619 6112276 YP_001750180.1 CDS PputW619_3326 NC_010501.1 3665231 3665872 D KEGG: pfo:Pfl_3019 hypothetical protein; hypothetical protein 3665231..3665872 Pseudomonas putida W619 6112277 YP_001750181.1 CDS PputW619_3327 NC_010501.1 3665869 3666675 D KEGG: pfo:Pfl_3020 hypothetical protein; hypothetical protein 3665869..3666675 Pseudomonas putida W619 6112278 YP_001750182.1 CDS PputW619_3328 NC_010501.1 3666665 3668173 D KEGG: pfo:Pfl_3021 hypothetical protein; hypothetical protein 3666665..3668173 Pseudomonas putida W619 6112279 YP_001750183.1 CDS PputW619_3329 NC_010501.1 3668136 3668555 D KEGG: pfo:Pfl_3022 hypothetical protein; hypothetical protein 3668136..3668555 Pseudomonas putida W619 6112280 YP_001750184.1 CDS PputW619_3330 NC_010501.1 3668555 3671296 D KEGG: pfo:Pfl_3023 hypothetical protein; hypothetical protein 3668555..3671296 Pseudomonas putida W619 6112281 YP_001750185.1 CDS PputW619_3331 NC_010501.1 3671517 3672494 D PFAM: protein of unknown function DUF1527; KEGG: pfo:Pfl_3026 protein of unknown function DUF1527; hypothetical protein 3671517..3672494 Pseudomonas putida W619 6112282 YP_001750186.1 CDS PputW619_3332 NC_010501.1 3672494 3673849 D KEGG: pfo:Pfl_3027 hypothetical protein; hypothetical protein 3672494..3673849 Pseudomonas putida W619 6112283 YP_001750187.1 CDS PputW619_3333 NC_010501.1 3673846 3674151 D KEGG: pfo:Pfl_3028 hypothetical protein; hypothetical protein 3673846..3674151 Pseudomonas putida W619 6112284 YP_001750188.1 CDS PputW619_3334 NC_010501.1 3674161 3675699 D KEGG: pfo:Pfl_3029 hypothetical protein; hypothetical protein 3674161..3675699 Pseudomonas putida W619 6112285 YP_001750189.1 CDS PputW619_3335 NC_010501.1 3676517 3676882 D KEGG: ajs:Ajs_2227 hypothetical protein; hypothetical protein 3676517..3676882 Pseudomonas putida W619 6112286 YP_001750190.1 CDS PputW619_3336 NC_010501.1 3677557 3678495 D PFAM: domain of unknown function DUF1738; KEGG: pfo:Pfl_3033 probable DNA primase; hypothetical protein 3677557..3678495 Pseudomonas putida W619 6112287 YP_001750191.1 CDS PputW619_3337 NC_010501.1 3678582 3678947 R KEGG: pfl:PFL_4981 transcriptional regulator, putative; transcriptional regulator complement(3678582..3678947) Pseudomonas putida W619 6112288 YP_001750192.1 CDS PputW619_3338 NC_010501.1 3679074 3679268 R hypothetical protein complement(3679074..3679268) Pseudomonas putida W619 6112289 YP_001750193.1 CDS PputW619_3339 NC_010501.1 3679488 3681197 D PFAM: protein of unknown function DUF1528; Relaxase; KEGG: pfo:Pfl_3034 hypothetical protein; relaxase 3679488..3681197 Pseudomonas putida W619 6112290 YP_001750194.1 CDS PputW619_3340 NC_010501.1 3681390 3682103 R KEGG: mbu:Mbur_1752 hypothetical protein; hypothetical protein complement(3681390..3682103) Pseudomonas putida W619 6112291 YP_001750195.1 CDS PputW619_3341 NC_010501.1 3682477 3683790 R PFAM: outer membrane porin; KEGG: pmy:Pmen_4306 outer membrane porin; outer membrane porin complement(3682477..3683790) Pseudomonas putida W619 6112292 YP_001750196.1 CDS PputW619_3342 NC_010501.1 3684142 3684924 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0998 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3684142..3684924) Pseudomonas putida W619 6112293 YP_001750197.1 CDS PputW619_3343 NC_010501.1 3684956 3685747 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo1927 probable enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase complement(3684956..3685747) Pseudomonas putida W619 6112294 YP_001750198.1 CDS PputW619_3344 NC_010501.1 3685744 3686925 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rrs:RoseRS_2545 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(3685744..3686925) Pseudomonas putida W619 6112295 YP_001750199.1 CDS PputW619_3345 NC_010501.1 3686954 3688627 R PFAM: AMP-dependent synthetase and ligase; KEGG: dol:Dole_2557 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3686954..3688627) Pseudomonas putida W619 6112296 YP_001750200.1 CDS PputW619_3346 NC_010501.1 3688642 3689700 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2692 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3688642..3689700) Pseudomonas putida W619 6112297 YP_001750201.1 CDS PputW619_3347 NC_010501.1 3689697 3690842 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: reh:H16_B0699 acyl-CoA dehydrogenase, long-chain specific; acyl-CoA dehydrogenase domain-containing protein complement(3689697..3690842) Pseudomonas putida W619 6112298 YP_001750202.1 CDS PputW619_3348 NC_010501.1 3690878 3692047 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_3969 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3690878..3692047) Pseudomonas putida W619 6112299 YP_001750203.1 CDS PputW619_3349 NC_010501.1 3692315 3692656 D KEGG: pfo:Pfl_2753 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3692315..3692656 Pseudomonas putida W619 6112300 YP_001750204.1 CDS PputW619_3350 NC_010501.1 3692653 3692865 D KEGG: reh:H16_A1267 short chain dehydrogenase; short chain dehydrogenase 3692653..3692865 Pseudomonas putida W619 6112301 YP_001750205.1 CDS PputW619_3351 NC_010501.1 3693177 3694205 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C6814 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3693177..3694205) Pseudomonas putida W619 6112302 YP_001750206.1 CDS PputW619_3352 NC_010501.1 3694705 3695406 D PFAM: nitroreductase; KEGG: rme:Rmet_1203 nitroreductase; nitroreductase 3694705..3695406 Pseudomonas putida W619 6112303 YP_001750207.1 CDS PputW619_3353 NC_010501.1 3695552 3697336 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cvi:CV_3816 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3695552..3697336 Pseudomonas putida W619 6112304 YP_001750208.1 CDS PputW619_3354 NC_010501.1 3697402 3698382 D PFAM: transposase IS4 family protein; KEGG: bpt:Bpet4179 ISPssy, transposase; transposase IS4 family protein 3697402..3698382 Pseudomonas putida W619 6112305 YP_001750209.1 CDS PputW619_3356 NC_010501.1 3699826 3700296 R KEGG: pau:PA14_59190 hypothetical protein; hypothetical protein complement(3699826..3700296) Pseudomonas putida W619 6112307 YP_001750210.1 CDS PputW619_3357 NC_010501.1 3700507 3701361 R KEGG: tde:TDE1618 hypothetical protein; hypothetical protein complement(3700507..3701361) Pseudomonas putida W619 6112308 YP_001750211.1 CDS PputW619_3358 NC_010501.1 3701410 3701949 R KEGG: rsq:Rsph17025_4363 hypothetical protein; hypothetical protein complement(3701410..3701949) Pseudomonas putida W619 6112309 YP_001750212.1 CDS PputW619_3359 NC_010501.1 3702025 3702576 R KEGG: sdn:Sden_3576 hypothetical protein; hypothetical protein complement(3702025..3702576) Pseudomonas putida W619 6112310 YP_001750213.1 CDS PputW619_3360 NC_010501.1 3702612 3703088 R PFAM: Domain of unknown function DUF1863; KEGG: shm:Shewmr7_1038 hypothetical protein; hypothetical protein complement(3702612..3703088) Pseudomonas putida W619 6112311 YP_001750214.1 CDS PputW619_3361 NC_010501.1 3703093 3704541 R KEGG: mms:mma_2731 hypothetical protein; hypothetical protein complement(3703093..3704541) Pseudomonas putida W619 6112312 YP_001750215.1 CDS PputW619_3362 NC_010501.1 3705086 3707083 R KEGG: plu:plu4326 hypothetical protein; hypothetical protein complement(3705086..3707083) Pseudomonas putida W619 6112313 YP_001750216.1 CDS PputW619_3363 NC_010501.1 3707067 3707573 R KEGG: plu:plu4327 hypothetical protein; hypothetical protein complement(3707067..3707573) Pseudomonas putida W619 6112314 YP_001750217.1 CDS PputW619_3364 NC_010501.1 3707570 3708775 R KEGG: plu:plu4328 hypothetical protein; hypothetical protein complement(3707570..3708775) Pseudomonas putida W619 6112315 YP_001750218.1 CDS PputW619_3365 NC_010501.1 3708936 3709691 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pst:PSPTO_4520 methyltransferase domain protein; hypothetical protein 3708936..3709691 Pseudomonas putida W619 6112316 YP_001750219.1 CDS PputW619_3366 NC_010501.1 3709688 3710089 D KEGG: pst:PSPTO_4520 methyltransferase domain protein; methyltransferase domain-containing protein 3709688..3710089 Pseudomonas putida W619 6112317 YP_001750220.1 CDS PputW619_3367 NC_010501.1 3710230 3710394 D KEGG: pst:PSPTO_4522 hypothetical protein; hypothetical protein 3710230..3710394 Pseudomonas putida W619 6112318 YP_001750221.1 CDS PputW619_3368 NC_010501.1 3710548 3710760 D hypothetical protein 3710548..3710760 Pseudomonas putida W619 6112319 YP_001750222.1 CDS PputW619_3369 NC_010501.1 3711082 3711879 D PFAM: Gp37Gp68 family protein; KEGG: sme:SMa2239 hypothetical protein; Gp37Gp68 family protein 3711082..3711879 Pseudomonas putida W619 6112320 YP_001750223.1 CDS PputW619_3370 NC_010501.1 3711898 3713127 D KEGG: rpb:RPB_2716 hypothetical protein; hypothetical protein 3711898..3713127 Pseudomonas putida W619 6112321 YP_001750224.1 CDS PputW619_3371 NC_010501.1 3713446 3713763 R KEGG: par:Psyc_0869 possible AAA ATPase family protein; hypothetical protein complement(3713446..3713763) Pseudomonas putida W619 6112322 YP_001750225.1 CDS PputW619_3372 NC_010501.1 3713885 3715690 R PFAM: integrase family protein; KEGG: net:Neut_0006 phage integrase family protein; integrase family protein complement(3713885..3715690) Pseudomonas putida W619 6112323 YP_001750226.1 CDS PputW619_3373 NC_010501.1 3716050 3716610 R KEGG: pen:PSEEN3448 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3716050..3716610) Pseudomonas putida W619 6112325 YP_001750227.1 CDS uvrC NC_010501.1 3716644 3718467 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3716644..3718467) Pseudomonas putida W619 6112326 YP_001750228.1 CDS PputW619_3375 NC_010501.1 3718473 3719111 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN3450 response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family); two component LuxR family transcriptional regulator complement(3718473..3719111) Pseudomonas putida W619 6112327 YP_001750229.1 CDS PputW619_3376 NC_010501.1 3719175 3719564 R SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN3451 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(3719175..3719564) Pseudomonas putida W619 6112328 YP_001750230.1 CDS PputW619_3377 NC_010501.1 3719718 3720149 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN3464 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(3719718..3720149) Pseudomonas putida W619 6112329 YP_001750231.1 CDS PputW619_3378 NC_010501.1 3720284 3720979 R PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN3467 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(3720284..3720979) Pseudomonas putida W619 6112330 YP_001750232.1 CDS PputW619_3379 NC_010501.1 3721053 3721553 R KEGG: pen:PSEEN3472 hypothetical protein; hypothetical protein complement(3721053..3721553) Pseudomonas putida W619 6112331 YP_001750233.1 CDS PputW619_3380 NC_010501.1 3721660 3723042 R PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN3473 gamma-aminobutyrate permease; amino acid permease-associated protein complement(3721660..3723042) Pseudomonas putida W619 6112332 YP_001750234.1 CDS PputW619_3381 NC_010501.1 3723298 3724194 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3474 transcriptional regulator, LysR family; LysR family transcriptional regulator 3723298..3724194 Pseudomonas putida W619 6112333 YP_001750235.1 CDS PputW619_3382 NC_010501.1 3724300 3725544 D PFAM: aminotransferase class-III; KEGG: pen:PSEEN3475 4-aminobutyrate aminotransferase, PLP-dependent; class III aminotransferase 3724300..3725544 Pseudomonas putida W619 6112334 YP_001750236.1 CDS PputW619_3383 NC_010501.1 3725548 3725850 R KEGG: pen:PSEEN3476 hypothetical protein; hypothetical protein complement(3725548..3725850) Pseudomonas putida W619 6112335 YP_001750237.1 CDS PputW619_3384 NC_010501.1 3725990 3726415 D KEGG: pen:PSEEN3477 hypothetical protein; hypothetical protein 3725990..3726415 Pseudomonas putida W619 6112336 YP_001750238.1 CDS PputW619_3385 NC_010501.1 3726489 3728600 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3726489..3728600 Pseudomonas putida W619 6112337 YP_001750239.1 CDS PputW619_3386 NC_010501.1 3728651 3730093 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN3479 probable sulfate transproter, MFS family; sulfate transporter complement(3728651..3730093) Pseudomonas putida W619 6112338 YP_001750240.1 CDS PputW619_3387 NC_010501.1 3730196 3731350 R KEGG: pfo:Pfl_5228 hypothetical protein; hypothetical protein complement(3730196..3731350) Pseudomonas putida W619 6112339 YP_001750241.1 CDS PputW619_3388 NC_010501.1 3731492 3732226 D PFAM: NolW domain protein; KEGG: pen:PSEEN3480 type II secretion system protein D; signal peptide; NolW domain-containing protein 3731492..3732226 Pseudomonas putida W619 6112340 YP_001750242.1 CDS PputW619_3389 NC_010501.1 3732720 3734045 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: pen:PSEEN3481 isocitrate lyase; isocitrate lyase 3732720..3734045 Pseudomonas putida W619 6112341 YP_001750243.1 CDS PputW619_3390 NC_010501.1 3734588 3736345 D TIGRFAM: oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: pst:PSPTO_0148 oligopeptide transporter, OPT family; OPT family oligopeptide transporter 3734588..3736345 Pseudomonas putida W619 6112342 YP_001750244.1 CDS PputW619_3391 NC_010501.1 3736747 3736989 D KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3736747..3736989 Pseudomonas putida W619 6112343 YP_001750245.1 CDS PputW619_3392 NC_010501.1 3737140 3737409 D KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 3737140..3737409 Pseudomonas putida W619 6112344 YP_001750246.1 CDS PputW619_3393 NC_010501.1 3737849 3738091 D KEGG: pen:PSEEN4574 hypothetical protein; hypothetical protein 3737849..3738091 Pseudomonas putida W619 6112345 YP_001750247.1 CDS PputW619_3394 NC_010501.1 3738242 3738511 D KEGG: pen:PSEEN5266 hypothetical protein; hypothetical protein 3738242..3738511 Pseudomonas putida W619 6112346 YP_001750248.1 CDS PputW619_3395 NC_010501.1 3738862 3739533 D PFAM: protein of unknown function UPF0005; KEGG: pen:PSEEN2225 hypothetical protein; hypothetical protein 3738862..3739533 Pseudomonas putida W619 6112348 YP_001750249.1 CDS PputW619_3396 NC_010501.1 3739756 3741135 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN2224 transporter, xanthine/uracil permease family; xanthine permease 3739756..3741135 Pseudomonas putida W619 6112349 YP_001750250.1 CDS PputW619_3397 NC_010501.1 3741221 3741613 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3741221..3741613 Pseudomonas putida W619 6112350 YP_001750251.1 CDS PputW619_3398 NC_010501.1 3741615 3741974 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3741615..3741974 Pseudomonas putida W619 6112351 YP_001750252.1 CDS PputW619_3399 NC_010501.1 3741974 3742270 D TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: pen:PSEEN2221 hypothetical protein; sulfur relay protein TusB/DsrH 3741974..3742270 Pseudomonas putida W619 6112352 YP_001750253.1 CDS PputW619_3400 NC_010501.1 3742267 3742602 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pen:PSEEN2220 sulfite reductase, gamma subunit DsrC-like; TusE/DsrC/DsvC family sulfur relay protein 3742267..3742602 Pseudomonas putida W619 6112353 YP_001750254.1 CDS PputW619_3401 NC_010501.1 3742599 3743603 D PFAM: glycosyl transferase family 3; KEGG: pen:PSEEN2219 phosphoribosyltransferase; hypothetical protein 3742599..3743603 Pseudomonas putida W619 6112354 YP_001750255.1 CDS PputW619_3402 NC_010501.1 3743696 3744652 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN2218 hypothetical protein; glutathione S-transferase domain-containing protein 3743696..3744652 Pseudomonas putida W619 6112355 YP_001750256.1 CDS PputW619_3403 NC_010501.1 3744684 3746078 R TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pen:PSEEN2217 siroheme synthase; uroporphyrin-III C-methyltransferase complement(3744684..3746078) Pseudomonas putida W619 6112356 YP_001750257.1 CDS PputW619_3404 NC_010501.1 3746079 3747359 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3746079..3747359) Pseudomonas putida W619 6112357 YP_001750258.1 CDS PputW619_3405 NC_010501.1 3747396 3747596 R KEGG: pen:PSEEN2215 CrcB protein; CrcB protein complement(3747396..3747596) Pseudomonas putida W619 6112358 YP_001750259.1 CDS PputW619_3406 NC_010501.1 3747593 3748918 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN2214 DNA-dependant ATPase; recombination factor protein RarA complement(3747593..3748918) Pseudomonas putida W619 6112359 YP_001750260.1 CDS lolA NC_010501.1 3748931 3749566 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(3748931..3749566) Pseudomonas putida W619 6112360 YP_001750261.1 CDS PputW619_3408 NC_010501.1 3749630 3752089 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: pen:PSEEN2212 cell division protein FtsK; cell division protein FtsK complement(3749630..3752089) Pseudomonas putida W619 6112361 YP_001750262.1 CDS aat NC_010501.1 3752470 3753150 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3752470..3753150 Pseudomonas putida W619 6112362 YP_001750263.1 CDS PputW619_3410 NC_010501.1 3753207 3753914 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3753207..3753914 Pseudomonas putida W619 6112363 YP_001750264.1 CDS infA NC_010501.1 3754017 3754235 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3754017..3754235 Pseudomonas putida W619 6112364 YP_001750265.1 CDS PputW619_3412 NC_010501.1 3754320 3756590 R KEGG: pen:PSEEN2207 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(3754320..3756590) Pseudomonas putida W619 6112365 YP_001750266.1 CDS clpS NC_010501.1 3756621 3756983 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(3756621..3756983) Pseudomonas putida W619 6112366 YP_001750267.1 CDS PputW619_3414 NC_010501.1 3757214 3757465 D KEGG: pen:PSEEN2205 cold-shock protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3757214..3757465 Pseudomonas putida W619 6112367 YP_001750268.1 CDS PputW619_3415 NC_010501.1 3757538 3758794 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: pen:PSEEN2204 isocitrate dehydrogenase; isocitrate dehydrogenase complement(3757538..3758794) Pseudomonas putida W619 6112368 YP_001750269.1 CDS PputW619_3416 NC_010501.1 3759211 3761436 D KEGG: pen:PSEEN2202 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 3759211..3761436 Pseudomonas putida W619 6112369 YP_001750270.1 CDS PputW619_3417 NC_010501.1 3761550 3761990 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN2201 hydrolase, NUDIX family; NUDIX hydrolase 3761550..3761990 Pseudomonas putida W619 6112370 YP_001750271.1 CDS mnmA NC_010501.1 3762050 3763174 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3762050..3763174 Pseudomonas putida W619 6112371 YP_001750272.1 CDS PputW619_3419 NC_010501.1 3763171 3763797 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 3763171..3763797 Pseudomonas putida W619 6112372 YP_001750273.1 CDS PputW619_3420 NC_010501.1 3763941 3765359 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3763941..3765359 Pseudomonas putida W619 6112373 YP_001750274.1 CDS PputW619_3421 NC_010501.1 3765441 3766607 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: pen:PSEEN2197 hypothetical protein; cupin 4 family protein 3765441..3766607 Pseudomonas putida W619 6112374 YP_001750275.1 CDS PputW619_3422 NC_010501.1 3766600 3767034 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN2196 acetyl transferase, GNAT family; N-acetyltransferase GCN5 3766600..3767034 Pseudomonas putida W619 6112375 YP_001750276.1 CDS PputW619_3423 NC_010501.1 3767298 3769262 D decatenates replicating daughter chromosomes; DNA topoisomerase III 3767298..3769262 Pseudomonas putida W619 6112376 YP_001750277.1 CDS PputW619_3424 NC_010501.1 3769287 3769865 R PFAM: DinB family protein; KEGG: pen:PSEEN3505 hypothetical protein; DinB family protein complement(3769287..3769865) Pseudomonas putida W619 6112377 YP_001750278.1 CDS PputW619_3425 NC_010501.1 3769878 3770984 R PFAM: AFG1-family ATPase; KEGG: pen:PSEEN3506 AFG1-like ATPase; AFG1 family ATPase complement(3769878..3770984) Pseudomonas putida W619 6112378 YP_001750279.1 CDS PputW619_3426 NC_010501.1 3771105 3772253 R PFAM: glucose sorbosone dehydrogenase; KEGG: pen:PSEEN3507 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(3771105..3772253) Pseudomonas putida W619 6112379 YP_001750280.1 CDS PputW619_3427 NC_010501.1 3772277 3772594 R KEGG: pen:PSEEN3508 hypothetical protein; hypothetical protein complement(3772277..3772594) Pseudomonas putida W619 6112380 YP_001750281.1 CDS PputW619_3428 NC_010501.1 3772858 3773346 D SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN3512 lipoprotein; water stress/hypersensitive response domain-containing protein 3772858..3773346 Pseudomonas putida W619 6112381 YP_001750282.1 CDS PputW619_3429 NC_010501.1 3773361 3773624 R KEGG: pen:PSEEN3514 hypothetical protein; hypothetical protein complement(3773361..3773624) Pseudomonas putida W619 6112382 YP_001750283.1 CDS PputW619_3430 NC_010501.1 3773751 3774071 D PFAM: protein of unknown function DUF883 ElaB; KEGG: pen:PSEEN3515 hypothetical protein; hypothetical protein 3773751..3774071 Pseudomonas putida W619 6112383 YP_001750284.1 CDS PputW619_3431 NC_010501.1 3774106 3774777 R PFAM: tRNA--hydroxylase; KEGG: pen:PSEEN3516 hypothetical protein; tRNA--hydroxylase complement(3774106..3774777) Pseudomonas putida W619 6112384 YP_001750285.1 CDS PputW619_3432 NC_010501.1 3774878 3775741 D PFAM: UspA domain protein; KEGG: pae:PA1789 hypothetical protein; UspA domain-containing protein 3774878..3775741 Pseudomonas putida W619 6112385 YP_001750286.1 CDS PputW619_3433 NC_010501.1 3781567 3782454 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3524 transporter, EamA family; hypothetical protein 3781567..3782454 Pseudomonas putida W619 6112391 YP_001750287.1 CDS PputW619_3434 NC_010501.1 3782675 3782926 D KEGG: pen:PSEEN3527 lipoprotein; lipoprotein 3782675..3782926 Pseudomonas putida W619 6112392 YP_001750288.1 CDS PputW619_3435 NC_010501.1 3782983 3784791 R PFAM: creatinase; peptidase M24; KEGG: pen:PSEEN3528 peptidase, M24 family protein; peptidase M24 complement(3782983..3784791) Pseudomonas putida W619 6112393 YP_001750289.1 CDS PputW619_3436 NC_010501.1 3785012 3786127 D KEGG: pmy:Pmen_2290 hypothetical protein; hypothetical protein 3785012..3786127 Pseudomonas putida W619 6112394 YP_001750290.1 CDS PputW619_3437 NC_010501.1 3786114 3786884 D KEGG: pmy:Pmen_2291 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 3786114..3786884 Pseudomonas putida W619 6112395 YP_001750291.1 CDS PputW619_3439 NC_010501.1 3787329 3787781 D TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN3530 transcriptional activator for superoxide response; Fe-S center for redox-sensing (MerR family); MerR family transcriptional regulator 3787329..3787781 Pseudomonas putida W619 6112397 YP_001750292.1 CDS PputW619_3440 NC_010501.1 3787849 3788397 D PFAM: isochorismatase hydrolase; KEGG: pfo:Pfl_5042 isochorismatase hydrolase; isochorismatase hydrolase 3787849..3788397 Pseudomonas putida W619 6112398 YP_001750293.1 CDS PputW619_3441 NC_010501.1 3788402 3788965 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN3531 transcriptional regulator, Cro/CI family; XRE family transcriptional regulator complement(3788402..3788965) Pseudomonas putida W619 6112399 YP_001750294.1 CDS PputW619_3442 NC_010501.1 3789049 3789993 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3532 hypothetical protein; hypothetical protein 3789049..3789993 Pseudomonas putida W619 6112400 YP_001750295.1 CDS PputW619_3443 NC_010501.1 3790143 3793058 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 3790143..3793058 Pseudomonas putida W619 6112401 YP_001750296.1 CDS PputW619_3444 NC_010501.1 3793058 3793402 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 3793058..3793402 Pseudomonas putida W619 6112402 YP_001750297.1 CDS PputW619_3445 NC_010501.1 3793399 3795078 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 3793399..3795078 Pseudomonas putida W619 6112403 YP_001750298.1 CDS PputW619_3446 NC_010501.1 3795075 3795563 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 3795075..3795563 Pseudomonas putida W619 6112404 YP_001750299.1 CDS PputW619_3447 NC_010501.1 3795560 3795838 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 3795560..3795838 Pseudomonas putida W619 6112405 YP_001750300.1 CDS PputW619_3448 NC_010501.1 3795835 3796200 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 3795835..3796200 Pseudomonas putida W619 6112406 YP_001750301.1 CDS PputW619_3449 NC_010501.1 3796213 3796425 R KEGG: pen:PSEEN3539 hypothetical protein; hypothetical protein complement(3796213..3796425) Pseudomonas putida W619 6112407 YP_001750302.1 CDS PputW619_3450 NC_010501.1 3796422 3796928 R KEGG: pen:PSEEN3540 hypothetical protein; hypothetical protein complement(3796422..3796928) Pseudomonas putida W619 6112408 YP_001750303.1 CDS PputW619_3451 NC_010501.1 3797393 3797587 R KEGG: pen:PSEEN3541 hypothetical protein; hypothetical protein complement(3797393..3797587) Pseudomonas putida W619 6112409 YP_001750304.1 CDS PputW619_3452 NC_010501.1 3797770 3798174 R PFAM: zinc finger DksA/TraR C4-type; KEGG: pen:PSEEN3543 RNA polymerase-binding protein DksA; TraR/DksA family transcriptional regulator complement(3797770..3798174) Pseudomonas putida W619 6112410 YP_001750305.1 CDS PputW619_3453 NC_010501.1 3798468 3803051 D KEGG: pen:PSEEN3544 hypothetical protein; hypothetical protein 3798468..3803051 Pseudomonas putida W619 6112411 YP_001750306.1 CDS PputW619_3454 NC_010501.1 3803038 3803811 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pen:PSEEN3545 enoyl-CoA hydratase, FadB1x; enoyl-CoA hydratase/isomerase complement(3803038..3803811) Pseudomonas putida W619 6112412 YP_001750307.1 CDS PputW619_3455 NC_010501.1 3803825 3804952 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN3546 acyl-CoA dehydrogenase protein FadFx; acyl-CoA dehydrogenase domain-containing protein complement(3803825..3804952) Pseudomonas putida W619 6112413 YP_001750308.1 CDS PputW619_3456 NC_010501.1 3804961 3806154 R KEGG: pen:PSEEN3547 acetyl-CoA acetyltransferase with thiolase domain FadAx; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; acetyl-CoA acetyltransferase complement(3804961..3806154) Pseudomonas putida W619 6112414 YP_001750309.1 CDS PputW619_3457 NC_010501.1 3806166 3806933 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN3548 3-hydroxyacyl-CoA dehydrogenase FadB2x; short-chain dehydrogenase/reductase SDR complement(3806166..3806933) Pseudomonas putida W619 6112415 YP_001750310.1 CDS PputW619_3458 NC_010501.1 3806947 3808590 R PFAM: AMP-dependent synthetase and ligase; KEGG: pen:PSEEN3549 acetyl-coA synthetase/AMP-(fatty) acid ligase FadDx; AMP-dependent synthetase and ligase complement(3806947..3808590) Pseudomonas putida W619 6112416 YP_001750311.1 CDS PputW619_3459 NC_010501.1 3808769 3809779 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3551 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3808769..3809779) Pseudomonas putida W619 6112417 YP_001750312.1 CDS PputW619_3460 NC_010501.1 3809844 3810707 R TIGRFAM: aminoethylphosphonate catabolism associated LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3552 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3809844..3810707) Pseudomonas putida W619 6112418 YP_001750313.1 CDS PputW619_3461 NC_010501.1 3810843 3811949 D catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate; 2-aminoethylphosphonate--pyruvate transaminase 3810843..3811949 Pseudomonas putida W619 6112419 YP_001750314.1 CDS PputW619_3462 NC_010501.1 3811984 3812811 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 3811984..3812811 Pseudomonas putida W619 6112420 YP_001750315.1 CDS PputW619_3463 NC_010501.1 3812920 3813480 R PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN3555 oxidoreductase, flavoprotein; NADPH-dependent FMN reductase complement(3812920..3813480) Pseudomonas putida W619 6112421 YP_001750316.1 CDS PputW619_3464 NC_010501.1 3813637 3813855 D KEGG: pen:PSEEN3556 hypothetical protein; hypothetical protein 3813637..3813855 Pseudomonas putida W619 6112422 YP_001750317.1 CDS PputW619_3465 NC_010501.1 3813839 3816088 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pen:PSEEN3557 arginine/lysine/ornithine decarboxylase; lysine decarboxylase complement(3813839..3816088) Pseudomonas putida W619 6112423 YP_001750318.1 CDS PputW619_3466 NC_010501.1 3816245 3817009 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(3816245..3817009) Pseudomonas putida W619 6112424 YP_001750319.1 CDS rnhA NC_010501.1 3817061 3817507 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(3817061..3817507) Pseudomonas putida W619 6112425 YP_001750320.1 CDS PputW619_3468 NC_010501.1 3817521 3818294 R KEGG: pen:PSEEN3560 hypothetical protein; hypothetical protein complement(3817521..3818294) Pseudomonas putida W619 6112426 YP_001750321.1 CDS PputW619_3469 NC_010501.1 3818381 3819160 D KEGG: pen:PSEEN3561 hydroxyacylglutathione hydrolase GloB; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 3818381..3819160 Pseudomonas putida W619 6112427 YP_001750322.1 CDS PputW619_3470 NC_010501.1 3819261 3820682 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: pen:PSEEN3562 membrane-bound lytic murein transglycosylase D MltD; MltD domain-containing protein 3819261..3820682 Pseudomonas putida W619 6112428 YP_001750323.1 CDS PputW619_3471 NC_010501.1 3820803 3822632 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3564 ABC transporter, periplamic binding protein; extracellular solute-binding protein 3820803..3822632 Pseudomonas putida W619 6112429 YP_001750324.1 CDS PputW619_3472 NC_010501.1 3822629 3824464 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN3565 ABC transporter, periplamic binding protein; extracellular solute-binding protein 3822629..3824464 Pseudomonas putida W619 6112430 YP_001750325.1 CDS PputW619_3473 NC_010501.1 3824466 3825539 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3566 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3824466..3825539 Pseudomonas putida W619 6112431 YP_001750326.1 CDS PputW619_3474 NC_010501.1 3825541 3826560 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3567 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 3825541..3826560 Pseudomonas putida W619 6112432 YP_001750327.1 CDS PputW619_3475 NC_010501.1 3826562 3828172 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3568 ABC transporter, ATP-binding protein; ABC transporter-like protein 3826562..3828172 Pseudomonas putida W619 6112433 YP_001750328.1 CDS PputW619_3476 NC_010501.1 3828513 3829028 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 factor 3828513..3829028 Pseudomonas putida W619 6112434 YP_001750329.1 CDS PputW619_3477 NC_010501.1 3829025 3829987 D with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon; fec operon regulator FecR 3829025..3829987 Pseudomonas putida W619 6112435 YP_001750330.1 CDS PputW619_3478 NC_010501.1 3830074 3832551 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2293 outer membrane ferripyoverdine receptor; TonB-dependent siderophore receptor 3830074..3832551 Pseudomonas putida W619 6112436 YP_001750331.1 CDS PputW619_3479 NC_010501.1 3832595 3833947 R PFAM: major facilitator superfamily MFS_1; KEGG: pfo:Pfl_1254 general substrate transporter; major facilitator transporter complement(3832595..3833947) Pseudomonas putida W619 6112437 YP_001750332.1 CDS PputW619_3480 NC_010501.1 3834082 3835380 R KEGG: psp:PSPPH_0906 sensory box protein/methyl-accepting chemotaxis protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(3834082..3835380) Pseudomonas putida W619 6112438 YP_001750333.1 CDS PputW619_3481 NC_010501.1 3835413 3837191 R PFAM: EAL domain protein; GAF domain protein; KEGG: psp:PSPPH_4247 GAF domain/GGDEF domain/EAL domain protein; diguanylate phosphodiesterase complement(3835413..3837191) Pseudomonas putida W619 6112439 YP_001750334.1 CDS PputW619_3482 NC_010501.1 3837593 3838288 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3605 transcriptional regulator of kdp operon; two component transcriptional regulator complement(3837593..3838288) Pseudomonas putida W619 6112440 YP_001750335.1 CDS PputW619_3483 NC_010501.1 3838285 3840939 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: pen:PSEEN3606 two-component sensor KdpD sensory kinase; osmosensitive K+ channel signal transduction histidine kinase complement(3838285..3840939) Pseudomonas putida W619 6112441 YP_001750336.1 CDS PputW619_3484 NC_010501.1 3841090 3841641 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(3841090..3841641) Pseudomonas putida W619 6112442 YP_001750337.1 CDS PputW619_3485 NC_010501.1 3841652 3843706 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(3841652..3843706) Pseudomonas putida W619 6112443 YP_001750338.1 CDS PputW619_3486 NC_010501.1 3843717 3845411 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(3843717..3845411) Pseudomonas putida W619 6112444 YP_001750339.1 CDS PputW619_3487 NC_010501.1 3845687 3846751 R PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN3611 hypothetical protein; hypothetical protein complement(3845687..3846751) Pseudomonas putida W619 6112445 YP_001750340.1 CDS PputW619_3488 NC_010501.1 3846752 3847543 R KEGG: pen:PSEEN3612 hypothetical protein; hypothetical protein complement(3846752..3847543) Pseudomonas putida W619 6112446 YP_001750341.1 CDS PputW619_3489 NC_010501.1 3847653 3848507 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: pen:PSEEN3613 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein complement(3847653..3848507) Pseudomonas putida W619 6112447 YP_001750342.1 CDS PputW619_3490 NC_010501.1 3848504 3849292 R KEGG: pen:PSEEN3614 hydrolase, alpha/beta fold family; alpha/beta fold family hydrolase complement(3848504..3849292) Pseudomonas putida W619 6112448 YP_001750343.1 CDS PputW619_3491 NC_010501.1 3849465 3849923 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: pen:PSEEN3616 phosphohistidine phosphatase SixA; phosphohistidine phosphatase SixA complement(3849465..3849923) Pseudomonas putida W619 6112449 YP_001750344.1 CDS PputW619_3492 NC_010501.1 3849920 3850267 R KEGG: pen:PSEEN3617 hypothetical protein; hypothetical protein complement(3849920..3850267) Pseudomonas putida W619 6112450 YP_001750345.1 CDS gpsA NC_010501.1 3850304 3851329 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3850304..3851329) Pseudomonas putida W619 6112451 YP_001750346.1 CDS PputW619_3494 NC_010501.1 3851483 3853630 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN3619 TonB-dependent receptor; TonB-dependent receptor plug 3851483..3853630 Pseudomonas putida W619 6112452 YP_001750347.1 CDS PputW619_3495 NC_010501.1 3853630 3854520 D KEGG: pen:PSEEN3620 hypothetical protein; hypothetical protein 3853630..3854520 Pseudomonas putida W619 6112453 YP_001750348.1 CDS PputW619_3496 NC_010501.1 3854517 3856448 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3621 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 3854517..3856448 Pseudomonas putida W619 6112454 YP_001750349.1 CDS PputW619_3497 NC_010501.1 3856650 3857165 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3856650..3857165 Pseudomonas putida W619 6112455 YP_001750350.1 CDS PputW619_3498 NC_010501.1 3857177 3858397 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 3857177..3858397 Pseudomonas putida W619 6112456 YP_001750351.1 CDS PputW619_3499 NC_010501.1 3858488 3859501 R PFAM: amidohydrolase 2; KEGG: pen:PSEEN3625 amidohydrolase; amidohydrolase 2 complement(3858488..3859501) Pseudomonas putida W619 6112457 YP_001750352.1 CDS PputW619_3500 NC_010501.1 3859607 3860470 D PFAM: Pirin domain protein; KEGG: pen:PSEEN3626 hypothetical protein; pirin domain-containing protein 3859607..3860470 Pseudomonas putida W619 6112458 YP_001750353.1 CDS PputW619_3501 NC_010501.1 3860599 3861324 R PFAM: dienelactone hydrolase; KEGG: pen:PSEEN3627 dienelactone hydrolase; dienelactone hydrolase complement(3860599..3861324) Pseudomonas putida W619 6112459 YP_001750354.1 CDS PputW619_3502 NC_010501.1 3861389 3863293 R molecular chaperone; heat shock protein 90 complement(3861389..3863293) Pseudomonas putida W619 6112460 YP_001750355.1 CDS PputW619_3503 NC_010501.1 3863363 3863845 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3629 hypothetical protein; thioesterase superfamily protein complement(3863363..3863845) Pseudomonas putida W619 6112461 YP_001750356.1 CDS PputW619_3504 NC_010501.1 3863842 3864318 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN3630 hypothetical protein; thioesterase superfamily protein complement(3863842..3864318) Pseudomonas putida W619 6112462 YP_001750357.1 CDS PputW619_3505 NC_010501.1 3864483 3864752 D KEGG: pen:PSEEN3631 lipoprotein; lipoprotein 3864483..3864752 Pseudomonas putida W619 6112463 YP_001750358.1 CDS PputW619_3506 NC_010501.1 3864819 3865568 R PFAM: protein of unknown function DUF599; KEGG: pen:PSEEN3632 hypothetical protein; hypothetical protein complement(3864819..3865568) Pseudomonas putida W619 6112464 YP_001750359.1 CDS PputW619_3507 NC_010501.1 3865749 3867062 R PFAM: branched-chain amino acid transport system II carrier protein; KEGG: pen:PSEEN3633 branched chain amino acid transporter; branched-chain amino acid transport system II carrier protein complement(3865749..3867062) Pseudomonas putida W619 6112465 YP_001750360.1 CDS PputW619_3508 NC_010501.1 3867455 3868339 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3867455..3868339) Pseudomonas putida W619 6112466 YP_001750361.1 CDS sucC NC_010501.1 3868339 3869505 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3868339..3869505) Pseudomonas putida W619 6112467 YP_001750362.1 CDS PputW619_3510 NC_010501.1 3869678 3871114 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3869678..3871114) Pseudomonas putida W619 6112468 YP_001750363.1 CDS PputW619_3511 NC_010501.1 3871211 3872413 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(3871211..3872413) Pseudomonas putida W619 6112469 YP_001750364.1 CDS sucA NC_010501.1 3872456 3875287 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3872456..3875287) Pseudomonas putida W619 6112470 YP_001750365.1 CDS sdhB NC_010501.1 3875534 3876238 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3875534..3876238) Pseudomonas putida W619 6112471 YP_001750366.1 CDS sdhA NC_010501.1 3876250 3878022 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3876250..3878022) Pseudomonas putida W619 6112472 YP_001750367.1 CDS PputW619_3515 NC_010501.1 3878026 3878394 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pen:PSEEN3643 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase, hydrophobic membrane anchor protein complement(3878026..3878394) Pseudomonas putida W619 6112473 YP_001750368.1 CDS PputW619_3516 NC_010501.1 3878388 3878774 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: pen:PSEEN3644 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(3878388..3878774) Pseudomonas putida W619 6112474 YP_001750369.1 CDS gltA NC_010501.1 3879127 3880416 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 3879127..3880416 Pseudomonas putida W619 6112475 YP_001750370.1 CDS PputW619_3518 NC_010501.1 3880485 3881093 R PFAM: lipid-binding START domain protein; KEGG: pen:PSEEN3647 hypothetical protein; lipid-binding START domain-containing protein complement(3880485..3881093) Pseudomonas putida W619 6112476 YP_001750371.1 CDS PputW619_3519 NC_010501.1 3881125 3881379 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN3648 hypothetical protein; hypothetical protein complement(3881125..3881379) Pseudomonas putida W619 6112477 YP_001750372.1 CDS PputW619_3520 NC_010501.1 3881501 3881905 R KEGG: pen:PSEEN3649 hypothetical protein; hypothetical protein complement(3881501..3881905) Pseudomonas putida W619 6112478 YP_001750373.1 CDS PputW619_3521 NC_010501.1 3881963 3883405 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN3650 transcriptional regulator, GntR family; transcriptional regulator complement(3881963..3883405) Pseudomonas putida W619 6112479 YP_001750374.1 CDS PputW619_3522 NC_010501.1 3883589 3884401 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN3654 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein complement(3883589..3884401) Pseudomonas putida W619 6112480 YP_001750375.1 CDS PputW619_3523 NC_010501.1 3884398 3884751 R KEGG: pen:PSEEN3655 lipoprotein; lipoprotein complement(3884398..3884751) Pseudomonas putida W619 6112481 YP_001750376.1 CDS PputW619_3524 NC_010501.1 3884761 3885543 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3656 hypothetical protein; extracellular solute-binding protein complement(3884761..3885543) Pseudomonas putida W619 6112482 YP_001750377.1 CDS PputW619_3525 NC_010501.1 3885660 3886589 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN3657 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha complement(3885660..3886589) Pseudomonas putida W619 6112483 YP_001750378.1 CDS PputW619_3526 NC_010501.1 3886590 3887339 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN3658 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit complement(3886590..3887339) Pseudomonas putida W619 6112484 YP_001750379.1 CDS PputW619_3527 NC_010501.1 3887896 3889560 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: pen:PSEEN3660 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 3887896..3889560 Pseudomonas putida W619 6112485 YP_001750380.1 CDS PputW619_3528 NC_010501.1 3889629 3890030 R SMART: helix-turn-helix domain protein; KEGG: bmu:Bmul_4193 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(3889629..3890030) Pseudomonas putida W619 6112486 YP_001750381.1 CDS PputW619_3529 NC_010501.1 3890033 3890329 R KEGG: bbr:BB1411 hypothetical protein; hypothetical protein complement(3890033..3890329) Pseudomonas putida W619 6112487 YP_001750382.1 CDS PputW619_3530 NC_010501.1 3890424 3891749 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3661 permease, MFS superfamily; major facilitator transporter complement(3890424..3891749) Pseudomonas putida W619 6112488 YP_001750383.1 CDS PputW619_3531 NC_010501.1 3891816 3892295 R KEGG: pen:PSEEN3662 hypothetical protein; response regulator receiver protein complement(3891816..3892295) Pseudomonas putida W619 6112489 YP_001750384.1 CDS PputW619_3532 NC_010501.1 3892466 3892942 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor complement(3892466..3892942) Pseudomonas putida W619 6112490 YP_001750385.1 CDS PputW619_3533 NC_010501.1 3893096 3894325 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3664 RND efflux membrane fusion protein; RND family efflux transporter MFP subunit 3893096..3894325 Pseudomonas putida W619 6112491 YP_001750386.1 CDS PputW619_3534 NC_010501.1 3894326 3896290 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pen:PSEEN3665 efflux ABC transporter, ATP-binding/permease protein; ABC transporter-like protein 3894326..3896290 Pseudomonas putida W619 6112492 YP_001750387.1 CDS PputW619_3535 NC_010501.1 3896294 3897697 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3666 multidrug efflux outer membrane protein, RND family; RND efflux system outer membrane lipoprotein 3896294..3897697 Pseudomonas putida W619 6112493 YP_001750388.1 CDS PputW619_3536 NC_010501.1 3897729 3899357 R KEGG: pfo:Pfl_1854 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal complement(3897729..3899357) Pseudomonas putida W619 6112494 YP_001750389.1 CDS PputW619_3537 NC_010501.1 3899568 3900920 D PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN3220 membrane dipeptidase; peptidase M19 renal dipeptidase 3899568..3900920 Pseudomonas putida W619 6112495 YP_001750390.1 CDS PputW619_3538 NC_010501.1 3900938 3902209 D PFAM: aminotransferase class V; KEGG: pen:PSEEN3221 aminotransferase, class V; class V aminotransferase 3900938..3902209 Pseudomonas putida W619 6112496 YP_001750391.1 CDS PputW619_3539 NC_010501.1 3902222 3903103 D PFAM: protein of unknown function DUF323; KEGG: pen:PSEEN3222 hypothetical protein; hypothetical protein 3902222..3903103 Pseudomonas putida W619 6112497 YP_001750392.1 CDS PputW619_3540 NC_010501.1 3903178 3904833 D KEGG: pfo:Pfl_1850 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 3903178..3904833 Pseudomonas putida W619 6112498 YP_001750393.1 CDS PputW619_3541 NC_010501.1 3904953 3911366 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pap:PSPA7_2859 linear gramicidin synthetase subunit D; amino acid adenylation domain-containing protein 3904953..3911366 Pseudomonas putida W619 6112499 YP_001750394.1 CDS PputW619_3542 NC_010501.1 3911366 3919903 D TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: pen:PSEEN3229 pyoverdine sidechain peptide synthetase; amino acid adenylation domain-containing protein 3911366..3919903 Pseudomonas putida W619 6112500 YP_001750395.1 CDS PputW619_3543 NC_010501.1 3919964 3920911 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pen:PSEEN3228 lipase; alpha/beta hydrolase domain-containing protein 3919964..3920911 Pseudomonas putida W619 6112501 YP_001750396.1 CDS PputW619_3544 NC_010501.1 3921054 3923588 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(3921054..3923588) Pseudomonas putida W619 6112502 YP_001750397.1 CDS PputW619_3545 NC_010501.1 3923961 3927050 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pfo:Pfl_1847 amino acid adenylation; amino acid adenylation domain-containing protein complement(3923961..3927050) Pseudomonas putida W619 6112503 YP_001750398.1 CDS PputW619_3546 NC_010501.1 3927047 3937261 R TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; Taurine catabolism dioxygenase TauD/TfdA; phosphopantetheine-binding; KEGG: pfo:Pfl_1846 peptide synthase; amino acid adenylation domain-containing protein complement(3927047..3937261) Pseudomonas putida W619 6112504 YP_001750399.1 CDS PputW619_3547 NC_010501.1 3937444 3938574 D SMART: transcription factor jumonji jmjC domain protein; KEGG: pfo:Pfl_1843 transcription factor jumonji, JmjC; transcription factor jumonji domain-containing protein 3937444..3938574 Pseudomonas putida W619 6112505 YP_001750400.1 CDS PputW619_3548 NC_010501.1 3938663 3940054 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(3938663..3940054) Pseudomonas putida W619 6112506 YP_001750401.1 CDS PputW619_3549 NC_010501.1 3940211 3941533 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3670 sensor histidine kinase ArmS; integral membrane sensor signal transduction histidine kinase complement(3940211..3941533) Pseudomonas putida W619 6112507 YP_001750402.1 CDS PputW619_3550 NC_010501.1 3941530 3942213 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3671 DNA-binding response regulator; two component transcriptional regulator complement(3941530..3942213) Pseudomonas putida W619 6112508 YP_001750403.1 CDS PputW619_3551 NC_010501.1 3942464 3943804 D KEGG: psb:Psyr_0686 hypothetical protein; hypothetical protein 3942464..3943804 Pseudomonas putida W619 6112509 YP_001750404.1 CDS PputW619_3552 NC_010501.1 3943822 3944439 D PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 3943822..3944439 Pseudomonas putida W619 6112510 YP_001750405.1 CDS PputW619_3553 NC_010501.1 3944462 3945082 D PFAM: GAD-like domain protein; Domain of unknown function DUF1851; KEGG: psb:Psyr_0687 hypothetical protein; GAD-like domain-containing protein 3944462..3945082 Pseudomonas putida W619 6112511 YP_001750406.1 CDS PputW619_3554 NC_010501.1 3945098 3945664 R KEGG: pen:PSEEN2871 hypothetical protein; hypothetical protein complement(3945098..3945664) Pseudomonas putida W619 6112512 YP_001750407.1 CDS PputW619_3555 NC_010501.1 3945661 3946632 R PFAM: protein of unknown function DUF182; KEGG: pau:PA14_61120 putative xanthine dehydrogenase accessory factor X; hypothetical protein complement(3945661..3946632) Pseudomonas putida W619 6112513 YP_001750408.1 CDS PputW619_3556 NC_010501.1 3946636 3947847 R PFAM: cytochrome c class I; KEGG: pen:PSEEN2873 cytochrome c; gluconate 2-dehydrogenase complement(3946636..3947847) Pseudomonas putida W619 6112514 YP_001750409.1 CDS PputW619_3557 NC_010501.1 3947850 3948386 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pen:PSEEN2874 oxidase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(3947850..3948386) Pseudomonas putida W619 6112515 YP_001750410.1 CDS PputW619_3558 NC_010501.1 3948379 3951210 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pen:PSEEN2875 oxidase, large subunit; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein complement(3948379..3951210) Pseudomonas putida W619 6112516 YP_001750411.1 CDS PputW619_3559 NC_010501.1 3951476 3953188 D PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: pen:PSEEN1818 thiol:disulfide interchange protein DsbD; protein-disulfide reductase 3951476..3953188 Pseudomonas putida W619 6112517 YP_001750412.1 CDS PputW619_3560 NC_010501.1 3953188 3954024 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN1817 thiol:disulfide interchange protein DsbE; redoxin domain-containing protein 3953188..3954024 Pseudomonas putida W619 6112518 YP_001750413.1 CDS PputW619_3562 NC_010501.1 3954914 3967867 R catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines; peptide synthase complement(3954914..3967867) Pseudomonas putida W619 6112520 YP_001750414.1 CDS PputW619_3563 NC_010501.1 3968173 3968703 D RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease; extracytoplasmic-function sigma-70 factor 3968173..3968703 Pseudomonas putida W619 6112521 YP_001750415.1 CDS PputW619_3564 NC_010501.1 3968802 3969815 R KEGG: pen:PSEEN1813 siderophore biosynthesis protein; siderophore biosynthesis protein complement(3968802..3969815) Pseudomonas putida W619 6112522 YP_001750416.1 CDS PputW619_3565 NC_010501.1 3969880 3970638 R SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN1812 periplasmic binding protein; extracellular solute-binding protein complement(3969880..3970638) Pseudomonas putida W619 6112523 YP_001750417.1 CDS PputW619_3566 NC_010501.1 3970844 3971389 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN1811 exonuclease; exonuclease RNase T and DNA polymerase III 3970844..3971389 Pseudomonas putida W619 6112524 YP_001750418.1 CDS PputW619_3567 NC_010501.1 3971482 3971766 D PFAM: protein of unknown function DUF1255; KEGG: pen:PSEEN1810 hypothetical protein; hypothetical protein 3971482..3971766 Pseudomonas putida W619 6112525 YP_001750419.1 CDS PputW619_3568 NC_010501.1 3971926 3972618 R KEGG: pen:PSEEN1809 hypothetical protein; hypothetical protein complement(3971926..3972618) Pseudomonas putida W619 6112526 YP_001750420.1 CDS PputW619_3569 NC_010501.1 3972668 3974092 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 3972668..3974092 Pseudomonas putida W619 6112527 YP_001750421.1 CDS PputW619_3570 NC_010501.1 3974106 3974714 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 3974106..3974714 Pseudomonas putida W619 6112528 YP_001750422.1 CDS PputW619_3571 NC_010501.1 3974720 3974911 D KEGG: pen:PSEEN1805 cytochrome c oxidase, cbb3-type, CcoQ subunit; cytochrome c oxidase, cbb3-type, CcoQ subunit 3974720..3974911 Pseudomonas putida W619 6112529 YP_001750423.1 CDS PputW619_3572 NC_010501.1 3974908 3975849 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1804 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 3974908..3975849 Pseudomonas putida W619 6112530 YP_001750424.1 CDS PputW619_3573 NC_010501.1 3976257 3977699 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 3976257..3977699 Pseudomonas putida W619 6112531 YP_001750425.1 CDS PputW619_3574 NC_010501.1 3977699 3978307 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 3977699..3978307 Pseudomonas putida W619 6112532 YP_001750426.1 CDS PputW619_3575 NC_010501.1 3978313 3978510 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: pen:PSEEN1800 cytochrome c oxidase, cbb3-type, CcoQ subunit; cbb3-type cytochrome oxidase subunit 3978313..3978510 Pseudomonas putida W619 6112533 YP_001750427.1 CDS PputW619_3576 NC_010501.1 3978507 3979487 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: pen:PSEEN1799 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III 3978507..3979487 Pseudomonas putida W619 6112534 YP_001750428.1 CDS PputW619_3577 NC_010501.1 3979762 3981180 D TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pen:PSEEN1798 oxidase with iron-sulfur cluster; cytochrome c oxidase accessory protein CcoG 3979762..3981180 Pseudomonas putida W619 6112535 YP_001750429.1 CDS PputW619_3578 NC_010501.1 3981196 3981723 D KEGG: pen:PSEEN1797 hypothetical protein; hypothetical protein 3981196..3981723 Pseudomonas putida W619 6112536 YP_001750430.1 CDS PputW619_3579 NC_010501.1 3981802 3984246 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN1796 copper-transporting P-type ATPase CcoI; heavy metal translocating P-type ATPase 3981802..3984246 Pseudomonas putida W619 6112537 YP_001750431.1 CDS PputW619_3580 NC_010501.1 3984260 3984472 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pen:PSEEN1795 cytochrome oxidase maturation protein, cbb3-type CcoS; cbb3-type cytochrome oxidase maturation protein 3984260..3984472 Pseudomonas putida W619 6112538 YP_001750432.1 CDS PputW619_3581 NC_010501.1 3984465 3985148 D KEGG: pen:PSEEN1794 hypothetical protein; hypothetical protein 3984465..3985148 Pseudomonas putida W619 6112539 YP_001750433.1 CDS PputW619_3582 NC_010501.1 3985257 3986639 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3985257..3986639 Pseudomonas putida W619 6112540 YP_001750434.1 CDS PputW619_3583 NC_010501.1 3986825 3987559 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pen:PSEEN1792 transcriptional regulator Anr; Crp/FNR family transcriptional regulator 3986825..3987559 Pseudomonas putida W619 6112541 YP_001750435.1 CDS PputW619_3584 NC_010501.1 3987615 3988163 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3987615..3988163 Pseudomonas putida W619 6112542 YP_001750436.1 CDS recR NC_010501.1 3988274 3988876 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(3988274..3988876) Pseudomonas putida W619 6112543 YP_001750437.1 CDS PputW619_3586 NC_010501.1 3989081 3989416 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1789 hypothetical protein; hypothetical protein complement(3989081..3989416) Pseudomonas putida W619 6112544 YP_001750438.1 CDS PputW619_3587 NC_010501.1 3989480 3991549 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(3989480..3991549) Pseudomonas putida W619 6112545 YP_001750439.1 CDS PputW619_3588 NC_010501.1 3991688 3992173 R KEGG: pen:PSEEN1786 hypothetical protein; hypothetical protein complement(3991688..3992173) Pseudomonas putida W619 6112546 YP_001750440.1 CDS PputW619_3589 NC_010501.1 3992256 3992669 D PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN1785 transcriptional regulator; MerR family transcriptional regulator 3992256..3992669 Pseudomonas putida W619 6112547 YP_001750441.1 CDS PputW619_3590 NC_010501.1 3992949 3994274 D PFAM: integrase family protein; KEGG: pen:PSEEN1782 integrase; integrase family protein 3992949..3994274 Pseudomonas putida W619 6112548 YP_001750442.1 CDS PputW619_3591 NC_010501.1 3994988 3995743 D PFAM: phage antirepressor protein; KilA domain protein; KEGG: bvi:Bcep1808_4553 KilA, N-terminal domain protein; phage antirepressor protein 3994988..3995743 Pseudomonas putida W619 6112549 YP_001750443.1 CDS PputW619_3592 NC_010501.1 3995933 3996856 D hypothetical protein 3995933..3996856 Pseudomonas putida W619 6112550 YP_001750444.1 CDS PputW619_3593 NC_010501.1 3997926 3998156 D PFAM: helix-turn-helix domain protein; KEGG: eci:UTI89_C0292 putative transcription regulator; XRE family transcriptional regulator 3997926..3998156 Pseudomonas putida W619 6112551 YP_001750445.1 CDS PputW619_3594 NC_010501.1 3998426 3998668 D hypothetical protein 3998426..3998668 Pseudomonas putida W619 6112552 YP_001750446.1 CDS PputW619_3595 NC_010501.1 3999352 4000065 D PFAM: Resolvase domain; KEGG: pau:PA14_22080 possible resolvase; resolvase domain-containing protein 3999352..4000065 Pseudomonas putida W619 6112553 YP_001750447.1 CDS PputW619_3596 NC_010501.1 4000293 4001057 R hypothetical protein complement(4000293..4001057) Pseudomonas putida W619 6112554 YP_001750448.1 CDS PputW619_3597 NC_010501.1 4001727 4002077 R KEGG: kpn:KPN_01427 hypothetical protein; hypothetical protein complement(4001727..4002077) Pseudomonas putida W619 6112555 YP_001750449.1 CDS PputW619_3598 NC_010501.1 4002391 4003515 R KEGG: csa:Csal_1202 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(4002391..4003515) Pseudomonas putida W619 6112556 YP_001750450.1 CDS PputW619_3599 NC_010501.1 4004304 4005137 R hypothetical protein complement(4004304..4005137) Pseudomonas putida W619 6112557 YP_001750451.1 CDS ligA NC_010501.1 4005606 4007936 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(4005606..4007936) Pseudomonas putida W619 6112559 YP_001750452.1 CDS zipA NC_010501.1 4008213 4009097 R interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA complement(4008213..4009097) Pseudomonas putida W619 6112560 YP_001750453.1 CDS PputW619_3602 NC_010501.1 4009302 4012790 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: pen:PSEEN1767 chromosome segregation SMC protein; chromosome segregation protein SMC complement(4009302..4012790) Pseudomonas putida W619 6112561 YP_001750454.1 CDS PputW619_3603 NC_010501.1 4012794 4013453 R PFAM: regulatory protein GntR HTH; KEGG: pen:PSEEN1766 transcriptional regulator (GntR-family); GntR family transcriptional regulator complement(4012794..4013453) Pseudomonas putida W619 6112562 YP_001750455.1 CDS PputW619_3604 NC_010501.1 4013721 4015175 D TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: ferredoxin; molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pen:PSEEN1765 xanthine dehydrogenase, small subunit XhdA; xanthine dehydrogenase small subunit 4013721..4015175 Pseudomonas putida W619 6112563 YP_001750456.1 CDS PputW619_3605 NC_010501.1 4015168 4017567 D KEGG: pen:PSEEN1764 xanthine dehydrogenase, large subunit XhdB; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; xanthine dehydrogenase, molybdopterin binding subunit 4015168..4017567 Pseudomonas putida W619 6112564 YP_001750457.1 CDS PputW619_3606 NC_010501.1 4017730 4018575 D TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182; KEGG: pen:PSEEN1763 xanthine dehydrogenase accessory factor XdhC; xanthine dehydrogenase accessory protein XdhC 4017730..4018575 Pseudomonas putida W619 6112565 YP_001750458.1 CDS PputW619_3607 NC_010501.1 4018586 4019890 D Catalyzes the deamination of guanine; guanine deaminase 4018586..4019890 Pseudomonas putida W619 6112566 YP_001750459.1 CDS PputW619_3608 NC_010501.1 4019887 4020585 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z complement(4019887..4020585) Pseudomonas putida W619 6112567 YP_001750460.1 CDS PputW619_3609 NC_010501.1 4020707 4021462 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN1760 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4020707..4021462) Pseudomonas putida W619 6112568 YP_001750461.1 CDS PputW619_3610 NC_010501.1 4021747 4023096 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pen:PSEEN1759 transporter; xanthine/uracil/vitamin C permease 4021747..4023096 Pseudomonas putida W619 6112569 YP_001750462.1 CDS PputW619_3611 NC_010501.1 4023392 4023745 R TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: pen:PSEEN1686 transthyretin; hydroxyisourate hydrolase complement(4023392..4023745) Pseudomonas putida W619 6112570 YP_001750463.1 CDS PputW619_3612 NC_010501.1 4024123 4025049 D KEGG: pen:PSEEN1685 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase; urate catabolism protein 4024123..4025049 Pseudomonas putida W619 6112571 YP_001750464.1 CDS PputW619_3613 NC_010501.1 4025049 4025564 D KEGG: pen:PSEEN1684 hypothetical protein; hypothetical protein 4025049..4025564 Pseudomonas putida W619 6112572 YP_001750465.1 CDS PputW619_3614 NC_010501.1 4025622 4026125 D catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 4025622..4026125 Pseudomonas putida W619 6112573 YP_001750466.1 CDS PputW619_3615 NC_010501.1 4026169 4027497 D PFAM: protein of unknown function DUF989; KEGG: pen:PSEEN1682 hypothetical protein; hypothetical protein 4026169..4027497 Pseudomonas putida W619 6112574 YP_001750467.1 CDS PputW619_3616 NC_010501.1 4027656 4029011 D TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN1681 xanthine/uracil permease; xanthine permease 4027656..4029011 Pseudomonas putida W619 6112575 YP_001750468.1 CDS PputW619_3617 NC_010501.1 4029153 4029938 D KEGG: pen:PSEEN1680 hypothetical protein; hypothetical protein 4029153..4029938 Pseudomonas putida W619 6112576 YP_001750469.1 CDS PputW619_3618 NC_010501.1 4030292 4031074 D KEGG: pen:PSEEN1679 hypothetical protein; hypothetical protein 4030292..4031074 Pseudomonas putida W619 6112577 YP_001750470.1 CDS PputW619_3619 NC_010501.1 4031183 4032097 R PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein complement(4031183..4032097) Pseudomonas putida W619 6112578 YP_001750471.1 CDS PputW619_3620 NC_010501.1 4032230 4032841 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN1675 transcriptional regulator, TetR family; TetR family transcriptional regulator 4032230..4032841 Pseudomonas putida W619 6112579 YP_001750472.1 CDS PputW619_3621 NC_010501.1 4032971 4033411 R PFAM: protein of unknown function DUF336; KEGG: pen:PSEEN1674 hypothetical protein; hypothetical protein complement(4032971..4033411) Pseudomonas putida W619 6112580 YP_001750473.1 CDS PputW619_3622 NC_010501.1 4033669 4035444 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 4033669..4035444 Pseudomonas putida W619 6112581 YP_001750474.1 CDS PputW619_3623 NC_010501.1 4035513 4036295 D KEGG: pen:PSEEN1671 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 4035513..4036295 Pseudomonas putida W619 6112582 YP_001750475.1 CDS PputW619_3624 NC_010501.1 4036476 4037369 D KEGG: pen:PSEEN1670 tartronic semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 4036476..4037369 Pseudomonas putida W619 6112583 YP_001750476.1 CDS PputW619_3625 NC_010501.1 4037536 4038810 D PFAM: MOFRL domain protein; KEGG: pen:PSEEN1669 hydroxypyruvate reductase; hydroxypyruvate reductase 4037536..4038810 Pseudomonas putida W619 6112584 YP_001750477.1 CDS PputW619_3626 NC_010501.1 4038807 4040222 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4038807..4040222 Pseudomonas putida W619 6112585 YP_001750478.1 CDS PputW619_3627 NC_010501.1 4040414 4041289 D PFAM: Urea transporter; KEGG: pen:PSEEN1667 transporter; Urea transporter 4040414..4041289 Pseudomonas putida W619 6112586 YP_001750479.1 CDS PputW619_3628 NC_010501.1 4041338 4042051 R KEGG: psp:PSPPH_1154 YD repeat protein; hypothetical protein complement(4041338..4042051) Pseudomonas putida W619 6112587 YP_001750480.1 CDS PputW619_3629 NC_010501.1 4042105 4042677 D KEGG: pen:PSEEN1667 transporter; Urea transporter-like protein 4042105..4042677 Pseudomonas putida W619 6112588 YP_001750481.1 CDS PputW619_3630 NC_010501.1 4042821 4043645 D PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pen:PSEEN1666 cation transporter, VIC family; Ion transport protein 4042821..4043645 Pseudomonas putida W619 6112589 YP_001750482.1 CDS PputW619_3631 NC_010501.1 4043618 4048105 R SMART: leucine-rich repeat-containing protein typical subtype; KEGG: pen:PSEEN3358 hypothetical protein; hypothetical protein complement(4043618..4048105) Pseudomonas putida W619 6112590 YP_001750483.1 CDS PputW619_3632 NC_010501.1 4048290 4049288 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1665 periplasmic thiosulfate-binding protein; sulfate ABC transporter substrate-binding protein 4048290..4049288 Pseudomonas putida W619 6112591 YP_001750484.1 CDS PputW619_3633 NC_010501.1 4049346 4050311 R KEGG: pen:PSEEN1664 hypothetical protein; hypothetical protein complement(4049346..4050311) Pseudomonas putida W619 6112592 YP_001750485.1 CDS PputW619_3634 NC_010501.1 4050438 4051334 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN1663 hypothetical protein; hypothetical protein complement(4050438..4051334) Pseudomonas putida W619 6112593 YP_001750486.1 CDS PputW619_3635 NC_010501.1 4051467 4051904 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN1662 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4051467..4051904 Pseudomonas putida W619 6112594 YP_001750487.1 CDS PputW619_3636 NC_010501.1 4052355 4053887 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN1660 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4052355..4053887 Pseudomonas putida W619 6112595 YP_001750488.1 CDS PputW619_3637 NC_010501.1 4053904 4054632 D PFAM: Asp/Glu/hydantoin racemase; KEGG: pen:PSEEN1659 hydantoin racemase; Asp/Glu/hydantoin racemase 4053904..4054632 Pseudomonas putida W619 6112596 YP_001750489.1 CDS PputW619_3638 NC_010501.1 4054794 4055987 R PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1658 D-amino acid dehydrogenase, small subunit; D-amino-acid dehydrogenase complement(4054794..4055987) Pseudomonas putida W619 6112597 YP_001750490.1 CDS PputW619_3639 NC_010501.1 4056033 4056695 R KEGG: pen:PSEEN1657 hypothetical protein; hypothetical protein complement(4056033..4056695) Pseudomonas putida W619 6112598 YP_001750491.1 CDS PputW619_3640 NC_010501.1 4056915 4057253 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN1656 FKBP-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(4056915..4057253) Pseudomonas putida W619 6112599 YP_001750492.1 CDS PputW619_3641 NC_010501.1 4057326 4057733 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN1655 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(4057326..4057733) Pseudomonas putida W619 6112600 YP_001750493.1 CDS PputW619_3642 NC_010501.1 4057911 4058699 R TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pen:PSEEN3771 phenazine biosynthesis protein, PhzC/F family; PhzF family phenazine biosynthesis protein complement(4057911..4058699) Pseudomonas putida W619 6112601 YP_001750494.1 CDS PputW619_3643 NC_010501.1 4058751 4059689 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN3772 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(4058751..4059689) Pseudomonas putida W619 6112602 YP_001750495.1 CDS PputW619_3644 NC_010501.1 4059842 4060261 R KEGG: pen:PSEEN3773 hypothetical protein; hypothetical protein complement(4059842..4060261) Pseudomonas putida W619 6112603 YP_001750496.1 CDS PputW619_3645 NC_010501.1 4060274 4061464 R KEGG: pen:PSEEN3774 cytochrome c-type biogenesis protein CycH; TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; cytochrome c-type biogenesis protein CcmI complement(4060274..4061464) Pseudomonas putida W619 6112604 YP_001750497.1 CDS PputW619_3646 NC_010501.1 4061457 4061933 R PFAM: cytochrome C biogenesis protein; KEGG: pen:PSEEN3775 cytochrome c-type biogenesis protein CycL; cytochrome C biogenesis protein complement(4061457..4061933) Pseudomonas putida W619 6112605 YP_001750498.1 CDS PputW619_3647 NC_010501.1 4061930 4062466 R TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN3776 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE complement(4061930..4062466) Pseudomonas putida W619 6112606 YP_001750499.1 CDS PputW619_3648 NC_010501.1 4062463 4064451 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3777 periplasmic cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(4062463..4064451) Pseudomonas putida W619 6112607 YP_001750500.1 CDS PputW619_3649 NC_010501.1 4064448 4064903 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(4064448..4064903) Pseudomonas putida W619 6112608 YP_001750501.1 CDS PputW619_3650 NC_010501.1 4064900 4065076 R TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: pfo:Pfl_2958 heme exporter protein D; heme exporter protein CcmD complement(4064900..4065076) Pseudomonas putida W619 6112609 YP_001750502.1 CDS PputW619_3651 NC_010501.1 4065076 4065840 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN3780 cytochrome c-type biogenesis protein CcmC; heme ABC export system, permease protein; heme exporter protein CcmC complement(4065076..4065840) Pseudomonas putida W619 6112610 YP_001750503.1 CDS PputW619_3652 NC_010501.1 4065887 4066555 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pen:PSEEN3781 heme ABC export system, permease protein CcmB; heme exporter protein CcmB complement(4065887..4066555) Pseudomonas putida W619 6112611 YP_001750504.1 CDS PputW619_3653 NC_010501.1 4066552 4067184 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(4066552..4067184) Pseudomonas putida W619 6112612 YP_001750505.1 CDS PputW619_3654 NC_010501.1 4067318 4068874 D KEGG: pen:PSEEN3783 hypothetical protein; hypothetical protein 4067318..4068874 Pseudomonas putida W619 6112613 YP_001750506.1 CDS PputW619_3655 NC_010501.1 4068871 4069215 D KEGG: pen:PSEEN3784 hypothetical protein; hypothetical protein 4068871..4069215 Pseudomonas putida W619 6112614 YP_001750507.1 CDS PputW619_3656 NC_010501.1 4069499 4072309 D KEGG: pen:PSEEN3785 hypothetical protein; hypothetical protein 4069499..4072309 Pseudomonas putida W619 6112615 YP_001750508.1 CDS PputW619_3657 NC_010501.1 4072452 4072847 R KEGG: pen:PSEEN3786 hypothetical protein; hypothetical protein complement(4072452..4072847) Pseudomonas putida W619 6112616 YP_001750509.1 CDS PputW619_3658 NC_010501.1 4072849 4073328 R PFAM: CheW domain protein; KEGG: pen:PSEEN3787 purine-binding chemotaxis protein CheW; CheW protein complement(4072849..4073328) Pseudomonas putida W619 6112617 YP_001750510.1 CDS PputW619_3659 NC_010501.1 4073371 4074246 R PFAM: CheW domain protein; KEGG: pen:PSEEN3788 hypothetical protein; CheW protein complement(4073371..4074246) Pseudomonas putida W619 6112618 YP_001750511.1 CDS PputW619_3660 NC_010501.1 4074243 4075034 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3789 ATPase, ParA family protein; cobyrinic acid ac-diamide synthase complement(4074243..4075034) Pseudomonas putida W619 6112619 YP_001750512.1 CDS PputW619_3661 NC_010501.1 4075126 4075983 R Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD complement(4075126..4075983) Pseudomonas putida W619 6112620 YP_001750513.1 CDS motC NC_010501.1 4075987 4076727 R homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein complement(4075987..4076727) Pseudomonas putida W619 6112621 YP_001750514.1 CDS PputW619_3663 NC_010501.1 4076727 4077851 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4076727..4077851) Pseudomonas putida W619 6112622 YP_001750515.1 CDS PputW619_3664 NC_010501.1 4077898 4080117 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: pen:PSEEN3793 chemotaxis histidine kinase CheA; CheA signal transduction histidine kinase complement(4077898..4080117) Pseudomonas putida W619 6112623 YP_001750516.1 CDS PputW619_3665 NC_010501.1 4080130 4080918 R PFAM: Chemotaxis phosphatase CheZ; KEGG: pen:PSEEN3794 chemotactic response, CheY protein phophatase; chemotaxis phosphatase CheZ complement(4080130..4080918) Pseudomonas putida W619 6112624 YP_001750517.1 CDS PputW619_3666 NC_010501.1 4080937 4081323 R PFAM: response regulator receiver; KEGG: pen:PSEEN3795 chemotaxis protein CheY; response regulator receiver protein complement(4080937..4081323) Pseudomonas putida W619 6112625 YP_001750518.1 CDS fliA NC_010501.1 4081416 4082156 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor complement(4081416..4082156) Pseudomonas putida W619 6112626 YP_001750519.1 CDS PputW619_3668 NC_010501.1 4082153 4082986 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN3797 flagellar number regulator FleN; cobyrinic acid ac-diamide synthase complement(4082153..4082986) Pseudomonas putida W619 6112627 YP_001750520.1 CDS flhF NC_010501.1 4083080 4084387 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(4083080..4084387) Pseudomonas putida W619 6112628 YP_001750521.1 CDS flhA NC_010501.1 4084399 4086528 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(4084399..4086528) Pseudomonas putida W619 6112629 YP_001750522.1 CDS PputW619_3671 NC_010501.1 4086890 4087633 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mlo:mlr7144 transcriptional regulator; GntR family transcriptional regulator 4086890..4087633 Pseudomonas putida W619 6112630 YP_001750523.1 CDS PputW619_3672 NC_010501.1 4087593 4088687 R KEGG: spe:Spro_1367 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(4087593..4088687) Pseudomonas putida W619 6112631 YP_001750524.1 CDS PputW619_3673 NC_010501.1 4088781 4090409 D KEGG: ret:RHE_PD00205 hypothetical protein; hypothetical protein 4088781..4090409 Pseudomonas putida W619 6112632 YP_001750525.1 CDS PputW619_3674 NC_010501.1 4090402 4091577 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: aba:Acid345_1980 cystathionine beta-lyase; Cys/Met metabolism pyridoxal-phosphate-dependent protein 4090402..4091577 Pseudomonas putida W619 6112633 YP_001750526.1 CDS PputW619_3675 NC_010501.1 4091614 4092492 D KEGG: rso:RS04684 hypothetical protein; hypothetical protein 4091614..4092492 Pseudomonas putida W619 6112634 YP_001750527.1 CDS PputW619_3676 NC_010501.1 4092503 4093663 D PFAM: aminotransferase class V; KEGG: plu:plu3103 hypothetical protein; class V aminotransferase 4092503..4093663 Pseudomonas putida W619 6112635 YP_001750528.1 CDS PputW619_3677 NC_010501.1 4093665 4094579 D PFAM: D-alanine--D-alanine ligase domain protein; KEGG: cbf:CLI_0538 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 4093665..4094579 Pseudomonas putida W619 6112636 YP_001750529.1 CDS flhB NC_010501.1 4094735 4095877 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4094735..4095877) Pseudomonas putida W619 6112637 YP_001750530.1 CDS fliR NC_010501.1 4095880 4096656 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(4095880..4096656) Pseudomonas putida W619 6112638 YP_001750531.1 CDS fliQ NC_010501.1 4096664 4096933 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(4096664..4096933) Pseudomonas putida W619 6112639 YP_001750532.1 CDS fliP NC_010501.1 4096955 4097722 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(4096955..4097722) Pseudomonas putida W619 6112640 YP_001750533.1 CDS PputW619_3682 NC_010501.1 4097722 4098177 R PFAM: flagellar biosynthesis protein FliO; KEGG: pen:PSEEN3804 flagellar assembly protein FliO; flagellar biosynthesis protein FliO complement(4097722..4098177) Pseudomonas putida W619 6112641 YP_001750534.1 CDS fliN NC_010501.1 4098178 4098642 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(4098178..4098642) Pseudomonas putida W619 6112642 YP_001750535.1 CDS fliM NC_010501.1 4098690 4099658 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM complement(4098690..4099658) Pseudomonas putida W619 6112643 YP_001750536.1 CDS fliL NC_010501.1 4099668 4100165 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(4099668..4100165) Pseudomonas putida W619 6112644 YP_001750537.1 CDS PputW619_3686 NC_010501.1 4100297 4101604 R PFAM: flagellar hook-length control protein; KEGG: pen:PSEEN3808 flagellar hook-length control protein FliK; flagellar hook-length control protein complement(4100297..4101604) Pseudomonas putida W619 6112645 YP_001750538.1 CDS PputW619_3687 NC_010501.1 4101677 4102015 R PFAM: Hpt domain protein; KEGG: pen:PSEEN3809 hypothetical protein; Hpt protein complement(4101677..4102015) Pseudomonas putida W619 6112646 YP_001750539.1 CDS PputW619_3688 NC_010501.1 4102073 4103767 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: pen:PSEEN3810 sensor histidine kinase/response regulator (hybrid); response regulator receiver protein complement(4102073..4103767) Pseudomonas putida W619 6112647 YP_001750540.1 CDS PputW619_3689 NC_010501.1 4103773 4104078 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN3811 anti-sigma F factor antagonist; anti-sigma-factor antagonist complement(4103773..4104078) Pseudomonas putida W619 6112648 YP_001750541.1 CDS fliJ NC_010501.1 4104156 4104608 R rod/hook and filament chaperone; flagellar biosynthesis chaperone complement(4104156..4104608) Pseudomonas putida W619 6112649 YP_001750542.1 CDS fliI NC_010501.1 4104615 4105973 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(4104615..4105973) Pseudomonas putida W619 6112650 YP_001750543.1 CDS fliH NC_010501.1 4105963 4106727 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(4105963..4106727) Pseudomonas putida W619 6112651 YP_001750544.1 CDS fliG NC_010501.1 4106846 4107865 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(4106846..4107865) Pseudomonas putida W619 6112652 YP_001750545.1 CDS fliF NC_010501.1 4107858 4109636 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(4107858..4109636) Pseudomonas putida W619 6112653 YP_001750546.1 CDS fliE NC_010501.1 4109652 4109984 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(4109652..4109984) Pseudomonas putida W619 6112654 YP_001750547.1 CDS PputW619_3696 NC_010501.1 4110127 4111503 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pen:PSEEN3818 response regulator FleR; Fis family two component sigma-54 specific transcriptional regulator complement(4110127..4111503) Pseudomonas putida W619 6112655 YP_001750548.1 CDS PputW619_3697 NC_010501.1 4111503 4112720 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: pen:PSEEN3819 sensory box histidine kinase FleS; PAS/PAC sensor signal transduction histidine kinase complement(4111503..4112720) Pseudomonas putida W619 6112656 YP_001750549.1 CDS PputW619_3698 NC_010501.1 4112973 4114448 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN3820 transcriptional regulator FleQ; sigma-54 dependent trancsriptional regulator complement(4112973..4114448) Pseudomonas putida W619 6112657 YP_001750550.1 CDS PputW619_3699 NC_010501.1 4114614 4114910 R KEGG: pen:PSEEN3822 flagellar protein, FliT; flagellar protein FliT complement(4114614..4114910) Pseudomonas putida W619 6112658 YP_001750551.1 CDS fliS NC_010501.1 4114924 4115319 R flagellin specific chaperone; flagellar protein FliS complement(4114924..4115319) Pseudomonas putida W619 6112659 YP_001750552.1 CDS PputW619_3701 NC_010501.1 4115521 4116936 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: pfl:PFL_1631 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein complement(4115521..4116936) Pseudomonas putida W619 6112660 YP_001750553.1 CDS PputW619_3702 NC_010501.1 4117019 4117372 R PFAM: flagellar protein FlaG protein; KEGG: pfl:PFL_1630 flagellin FlaG; flagellar protein FlaG protein complement(4117019..4117372) Pseudomonas putida W619 6112661 YP_001750554.1 CDS PputW619_3703 NC_010501.1 4117444 4118298 R structural flagella protein; flagellin complement(4117444..4118298) Pseudomonas putida W619 6112662 YP_001750555.1 CDS PputW619_3704 NC_010501.1 4118517 4118765 R KEGG: pfo:Pfl_1526 hypothetical protein; hypothetical protein complement(4118517..4118765) Pseudomonas putida W619 6112663 YP_001750556.1 CDS PputW619_3705 NC_010501.1 4118762 4120054 R KEGG: pfo:Pfl_1525 hypothetical protein; hypothetical protein complement(4118762..4120054) Pseudomonas putida W619 6112664 YP_001750557.1 CDS PputW619_3706 NC_010501.1 4120108 4121055 R PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: pfl:PFL_1626 3-oxoacyl-(acyl-carrier-protein) synthase III; beta-ketoacyl-acyl-carrier-protein synthase I complement(4120108..4121055) Pseudomonas putida W619 6112665 YP_001750558.1 CDS PputW619_3707 NC_010501.1 4121333 4122385 R PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: pfo:Pfl_1523 NeuB; N-acylneuraminate-9-phosphate synthase complement(4121333..4122385) Pseudomonas putida W619 6112666 YP_001750559.1 CDS PputW619_3708 NC_010501.1 4122389 4123864 R PFAM: GCN5-related N-acetyltransferase; KEGG: pfl:PFL_1624 FlaR protein (FlaR); N-acetyltransferase GCN5 complement(4122389..4123864) Pseudomonas putida W619 6112667 YP_001750560.1 CDS PputW619_3709 NC_010501.1 4123861 4124586 R PFAM: acylneuraminate cytidylyltransferase; KEGG: pfl:PFL_1623 acylneuraminate cytidylyltransferase, putative; N-acylneuraminate cytidylyltransferase complement(4123861..4124586) Pseudomonas putida W619 6112668 YP_001750561.1 CDS PputW619_3710 NC_010501.1 4124579 4125760 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pfo:Pfl_1519 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(4124579..4125760) Pseudomonas putida W619 6112669 YP_001750562.1 CDS PputW619_3711 NC_010501.1 4125757 4126758 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: pfo:Pfl_1518 NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD complement(4125757..4126758) Pseudomonas putida W619 6112670 YP_001750563.1 CDS PputW619_3712 NC_010501.1 4126903 4129800 R PFAM: glycosyl transferase family 2; KEGG: pfo:Pfl_1517 glycosyl transferase, family 2; glycosyl transferase family protein complement(4126903..4129800) Pseudomonas putida W619 6112671 YP_001750564.1 CDS PputW619_3713 NC_010501.1 4129855 4130589 R PFAM: Cephalosporin hydroxylase; KEGG: pfo:Pfl_1516 cephalosporin hydroxylase; cephalosporin hydroxylase complement(4129855..4130589) Pseudomonas putida W619 6112672 YP_001750565.1 CDS PputW619_3714 NC_010501.1 4130596 4131681 R PFAM: Methyltransferase type 11; KEGG: sat:SYN_02653 methyltransferase; type 11 methyltransferase complement(4130596..4131681) Pseudomonas putida W619 6112673 YP_001750566.1 CDS PputW619_3715 NC_010501.1 4131671 4132528 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: dol:Dole_1963 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(4131671..4132528) Pseudomonas putida W619 6112674 YP_001750567.1 CDS PputW619_3716 NC_010501.1 4132534 4133757 R PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: pfo:Pfl_1513 hypothetical protein; C-methyltransferase complement(4132534..4133757) Pseudomonas putida W619 6112675 YP_001750568.1 CDS PputW619_3717 NC_010501.1 4133754 4134314 R PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: pfo:Pfl_1512 dTDP-4-dehydrorhamnose 3,5-epimerase; dTDP-4-dehydrorhamnose 3,5-epimerase complement(4133754..4134314) Pseudomonas putida W619 6112676 YP_001750569.1 CDS PputW619_3718 NC_010501.1 4134311 4135393 R TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: pfo:Pfl_1511 NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase complement(4134311..4135393) Pseudomonas putida W619 6112677 YP_001750570.1 CDS PputW619_3719 NC_010501.1 4135375 4136148 R TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pfo:Pfl_1510 nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase complement(4135375..4136148) Pseudomonas putida W619 6112678 YP_001750571.1 CDS PputW619_3720 NC_010501.1 4136274 4139855 R PFAM: glycosyl transferase family 2; KEGG: pfo:Pfl_1508 glycosyl transferase, family 2; glycosyl transferase family protein complement(4136274..4139855) Pseudomonas putida W619 6112679 YP_001750572.1 CDS flgL NC_010501.1 4139974 4141548 R With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(4139974..4141548) Pseudomonas putida W619 6112680 YP_001750573.1 CDS flgK NC_010501.1 4141562 4143610 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(4141562..4143610) Pseudomonas putida W619 6112681 YP_001750574.1 CDS flgJ NC_010501.1 4143623 4144789 R Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ complement(4143623..4144789) Pseudomonas putida W619 6112682 YP_001750575.1 CDS flgI NC_010501.1 4144801 4145910 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(4144801..4145910) Pseudomonas putida W619 6112683 YP_001750576.1 CDS flgH NC_010501.1 4145923 4146618 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(4145923..4146618) Pseudomonas putida W619 6112684 YP_001750577.1 CDS flgG NC_010501.1 4146653 4147438 R makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG complement(4146653..4147438) Pseudomonas putida W619 6112685 YP_001750578.1 CDS flgF NC_010501.1 4147486 4148232 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF complement(4147486..4148232) Pseudomonas putida W619 6112686 YP_001750579.1 CDS PputW619_3728 NC_010501.1 4148560 4148745 R KEGG: pen:PSEEN3838 hypothetical protein; hypothetical protein complement(4148560..4148745) Pseudomonas putida W619 6112687 YP_001750580.1 CDS flgE NC_010501.1 4148819 4150174 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(4148819..4150174) Pseudomonas putida W619 6112688 YP_001750581.1 CDS flgD NC_010501.1 4150205 4150912 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein complement(4150205..4150912) Pseudomonas putida W619 6112689 YP_001750582.1 CDS flgC NC_010501.1 4150928 4151371 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(4150928..4151371) Pseudomonas putida W619 6112690 YP_001750583.1 CDS flgB NC_010501.1 4151374 4151784 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(4151374..4151784) Pseudomonas putida W619 6112691 YP_001750584.1 CDS PputW619_3733 NC_010501.1 4152108 4152935 R PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN3844 chemotaxis protein methyltransferase CheR; CheR-type MCP methyltransferase complement(4152108..4152935) Pseudomonas putida W619 6112692 YP_001750585.1 CDS PputW619_3734 NC_010501.1 4152987 4153916 R PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN3845 chemotaxis protein CheV; response regulator receiver modulated CheW protein complement(4152987..4153916) Pseudomonas putida W619 6112693 YP_001750586.1 CDS flgA NC_010501.1 4153995 4154747 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 4153995..4154747 Pseudomonas putida W619 6112694 YP_001750587.1 CDS PputW619_3736 NC_010501.1 4154898 4155209 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: pen:PSEEN3847 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor FlgM 4154898..4155209 Pseudomonas putida W619 6112695 YP_001750588.1 CDS PputW619_3737 NC_010501.1 4155259 4155726 D PFAM: FlgN family protein; KEGG: pen:PSEEN3848 flagella synthesis protein FlgN; FlgN family protein 4155259..4155726 Pseudomonas putida W619 6112696 YP_001750589.1 CDS PputW619_3738 NC_010501.1 4155807 4156550 D PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN3849 hypothetical protein; type IV pilus assembly PilZ 4155807..4156550 Pseudomonas putida W619 6112697 YP_001750590.1 CDS PputW619_3739 NC_010501.1 4156814 4158145 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3850 major facilitator family transporter; major facilitator transporter complement(4156814..4158145) Pseudomonas putida W619 6112698 YP_001750591.1 CDS PputW619_3740 NC_010501.1 4158276 4159619 R PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3851 glutamine synthetase; glutamate--putrescine ligase complement(4158276..4159619) Pseudomonas putida W619 6112699 YP_001750592.1 CDS PputW619_3741 NC_010501.1 4159717 4160202 R PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN3852 transcriptional regulator BkdR; AsnC family transcriptional regulator complement(4159717..4160202) Pseudomonas putida W619 6112700 YP_001750593.1 CDS PputW619_3742 NC_010501.1 4160400 4161632 D PFAM: dehydrogenase E1 component; KEGG: pen:PSEEN3853 2-oxoisovalerate dehydrogenase, alpha subunit; 3-methyl-2-oxobutanoate dehydrogenase 4160400..4161632 Pseudomonas putida W619 6112701 YP_001750594.1 CDS PputW619_3743 NC_010501.1 4161634 4162692 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: pen:PSEEN3854 2-oxoisovalerate dehydrogenase, beta subunit; transketolase central region 4161634..4162692 Pseudomonas putida W619 6112702 YP_001750595.1 CDS PputW619_3744 NC_010501.1 4162693 4163955 D PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pen:PSEEN3855 2-oxoisovalerate dehydrogenase, lipoamide acyltransferase component; branched-chain alpha-keto acid dehydrogenase subunit E2 4162693..4163955 Pseudomonas putida W619 6112703 YP_001750596.1 CDS PputW619_3745 NC_010501.1 4163958 4165337 D E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4163958..4165337 Pseudomonas putida W619 6112704 YP_001750597.1 CDS PputW619_3746 NC_010501.1 4165442 4166164 R KEGG: nca:Noca_4223 dTDP-6-deoxy-L-hexose 3-O-methyltransferase; dTDP-6-deoxy-L-hexose 3-O-methyltransferase complement(4165442..4166164) Pseudomonas putida W619 6112705 YP_001750598.1 CDS PputW619_3747 NC_010501.1 4166161 4167027 R KEGG: fal:FRAAL6244 hypothetical protein; hypothetical protein complement(4166161..4167027) Pseudomonas putida W619 6112706 YP_001750599.1 CDS PputW619_3748 NC_010501.1 4167252 4168100 R hypothetical protein complement(4167252..4168100) Pseudomonas putida W619 6112707 YP_001750600.1 CDS PputW619_3749 NC_010501.1 4168217 4168873 D PFAM: transferase hexapeptide repeat containing protein; KEGG: fjo:Fjoh_0320 acyl-(acyl carrier protein)-like protein; hexapaptide repeat-containing transferase 4168217..4168873 Pseudomonas putida W619 6112708 YP_001750601.1 CDS PputW619_3750 NC_010501.1 4168881 4169804 D KEGG: bte:BTH_I3215 hypothetical protein; hypothetical protein 4168881..4169804 Pseudomonas putida W619 6112709 YP_001750602.1 CDS PputW619_3751 NC_010501.1 4169797 4170576 D KEGG: saq:Sare_2046 conserved hypothetical protein; hypothetical protein 4169797..4170576 Pseudomonas putida W619 6112710 YP_001750603.1 CDS PputW619_3752 NC_010501.1 4170584 4171363 D PFAM: Phytanoyl-CoA dioxygenase; KEGG: rme:Rmet_5239 phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 4170584..4171363 Pseudomonas putida W619 6112711 YP_001750604.1 CDS PputW619_3753 NC_010501.1 4171366 4172094 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_5240 methyltransferase type 12; type 12 methyltransferase 4171366..4172094 Pseudomonas putida W619 6112712 YP_001750605.1 CDS PputW619_3754 NC_010501.1 4172098 4172799 R PFAM: WbqC-like family protein; KEGG: bte:BTH_I3212 WbnG; WbqC-like family protein complement(4172098..4172799) Pseudomonas putida W619 6112713 YP_001750606.1 CDS PputW619_3755 NC_010501.1 4172796 4173917 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A0099 putative transferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(4172796..4173917) Pseudomonas putida W619 6112714 YP_001750607.1 CDS PputW619_3756 NC_010501.1 4173988 4175169 R PFAM: glycosyl transferase family 2; KEGG: xac:XAC1957 O-antigen biosynthesis protein; glycosyl transferase family protein complement(4173988..4175169) Pseudomonas putida W619 6112715 YP_001750608.1 CDS PputW619_3757 NC_010501.1 4175536 4176507 D PFAM: Endonuclease I; KEGG: net:Neut_2614 deoxyribonuclease I; deoxyribonuclease I 4175536..4176507 Pseudomonas putida W619 6112716 YP_001750609.1 CDS PputW619_3758 NC_010501.1 4176720 4177307 R TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: pen:PSEEN3864 ATP-binding protein PhnN; phosphonate metabolism protein/1,5-bisphosphokinase PhnN complement(4176720..4177307) Pseudomonas putida W619 6112718 YP_001750610.1 CDS PputW619_3759 NC_010501.1 4177652 4177978 D PFAM: Arc domain protein DNA binding domain protein; KEGG: pen:PSEEN3868 alginate biosynthesis transcriptional activator; Arc domain-containing protein 4177652..4177978 Pseudomonas putida W619 6112719 YP_001750611.1 CDS PputW619_3760 NC_010501.1 4178073 4179515 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pen:PSEEN3870 magnesium transporter; magnesium transporter complement(4178073..4179515) Pseudomonas putida W619 6112720 YP_001750612.1 CDS PputW619_3761 NC_010501.1 4180535 4180723 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(4180535..4180723) Pseudomonas putida W619 6112725 YP_001750613.1 CDS PputW619_3762 NC_010501.1 4180891 4182126 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(4180891..4182126) Pseudomonas putida W619 6112726 YP_001750614.1 CDS alaS NC_010501.1 4182212 4184905 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(4182212..4184905) Pseudomonas putida W619 6112727 YP_001750615.1 CDS PputW619_3764 NC_010501.1 4185174 4186181 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase complement(4185174..4186181) Pseudomonas putida W619 6112728 YP_001750616.1 CDS PputW619_3765 NC_010501.1 4186192 4186482 R KEGG: pen:PSEEN3877 hypothetical protein; hypothetical protein complement(4186192..4186482) Pseudomonas putida W619 6112729 YP_001750617.1 CDS PputW619_3766 NC_010501.1 4186497 4187846 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(4186497..4187846) Pseudomonas putida W619 6112730 YP_001750618.1 CDS astD NC_010501.1 4187870 4189333 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase complement(4187870..4189333) Pseudomonas putida W619 6112731 YP_001750619.1 CDS PputW619_3768 NC_010501.1 4189334 4190362 R KEGG: pen:PSEEN3880 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase complement(4189334..4190362) Pseudomonas putida W619 6112732 YP_001750620.1 CDS PputW619_3769 NC_010501.1 4190417 4191436 R KEGG: pen:PSEEN3881 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine/ornithine succinyltransferase, alpha subunit; PFAM: arginine N-succinyltransferase beta subunit; arginine/ornithine succinyltransferase subunit alpha complement(4190417..4191436) Pseudomonas putida W619 6112733 YP_001750621.1 CDS argD NC_010501.1 4191577 4192797 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(4191577..4192797) Pseudomonas putida W619 6112734 YP_001750622.1 CDS PputW619_3771 NC_010501.1 4193092 4194072 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3883 transcriptional regulator ArgR, AraC family; AraC family transcriptional regulator complement(4193092..4194072) Pseudomonas putida W619 6112735 YP_001750623.1 CDS PputW619_3772 NC_010501.1 4194173 4194937 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3884 arginine/ornithine transport ATP-binding protein AotP; ABC transporter-like protein complement(4194173..4194937) Pseudomonas putida W619 6112736 YP_001750624.1 CDS PputW619_3773 NC_010501.1 4194960 4195658 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3885 arginine/ornithine transport membrane protein AotM; polar amino acid ABC transporter inner membrane subunit complement(4194960..4195658) Pseudomonas putida W619 6112737 YP_001750625.1 CDS PputW619_3774 NC_010501.1 4195655 4196344 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN3886 arginine/ornithine transport protein AotQ (membrane); polar amino acid ABC transporter inner membrane subunit complement(4195655..4196344) Pseudomonas putida W619 6112738 YP_001750626.1 CDS PputW619_3775 NC_010501.1 4196433 4197218 R TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: pen:PSEEN3887 arginine/ornithine periplasmic-binding protein AotJ; cationic amino acid ABC transporter periplasmic binding protein complement(4196433..4197218) Pseudomonas putida W619 6112739 YP_001750627.1 CDS PputW619_3776 NC_010501.1 4197725 4199686 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4197725..4199686) Pseudomonas putida W619 6112740 YP_001750628.1 CDS PputW619_3777 NC_010501.1 4200114 4200368 D KEGG: pen:PSEEN3890 hypothetical protein; hypothetical protein 4200114..4200368 Pseudomonas putida W619 6112741 YP_001750629.1 CDS PputW619_3778 NC_010501.1 4200450 4202009 R PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: pen:PSEEN3891 phenylalanine hydroxylase gene cluster transcription activator; transcriptional regulator TyrR complement(4200450..4202009) Pseudomonas putida W619 6112742 YP_001750630.1 CDS phhA NC_010501.1 4202266 4203054 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 4202266..4203054 Pseudomonas putida W619 6112743 YP_001750631.1 CDS phhB NC_010501.1 4203094 4203450 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 4203094..4203450 Pseudomonas putida W619 6112744 YP_001750632.1 CDS PputW619_3781 NC_010501.1 4203885 4205072 D PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN3896 transport protein (MFS family); major facilitator superfamily transporter 4203885..4205072 Pseudomonas putida W619 6112745 YP_001750633.1 CDS PputW619_3782 NC_010501.1 4205157 4208174 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pen:PSEEN3897 oxidase, FAD-binding; FAD linked oxidase domain-containing protein complement(4205157..4208174) Pseudomonas putida W619 6112746 YP_001750634.1 CDS PputW619_3783 NC_010501.1 4208327 4209211 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3898 transcriptional regulator, LysR family; LysR family transcriptional regulator 4208327..4209211 Pseudomonas putida W619 6112747 YP_001750635.1 CDS PputW619_3784 NC_010501.1 4209312 4210733 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN3899 aromatic amino acid transporter (APC family); amino acid permease-associated protein complement(4209312..4210733) Pseudomonas putida W619 6112748 YP_001750636.1 CDS PputW619_3785 NC_010501.1 4211369 4212433 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pen:PSEEN3900 ribosomal large subunit pseudouridine synthase B; RNA-binding S4 domain-containing protein complement(4211369..4212433) Pseudomonas putida W619 6112749 YP_001750637.1 CDS PputW619_3786 NC_010501.1 4212656 4213435 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pen:PSEEN3901 hypothetical protein; segregation and condensation protein B complement(4212656..4213435) Pseudomonas putida W619 6112750 YP_001750638.1 CDS PputW619_3787 NC_010501.1 4213422 4214267 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: pen:PSEEN3902 hypothetical protein; chromosome segregation and condensation protein ScpA complement(4213422..4214267) Pseudomonas putida W619 6112751 YP_001750639.1 CDS PputW619_3788 NC_010501.1 4214273 4214938 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: pen:PSEEN3903 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein complement(4214273..4214938) Pseudomonas putida W619 6112752 YP_001750640.1 CDS PputW619_3789 NC_010501.1 4214916 4215776 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pen:PSEEN3904 phosphoesterase (PHP family); phosphotransferase domain-containing protein complement(4214916..4215776) Pseudomonas putida W619 6112753 YP_001750641.1 CDS PputW619_3790 NC_010501.1 4215805 4216437 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 4215805..4216437 Pseudomonas putida W619 6112754 YP_001750642.1 CDS PputW619_3791 NC_010501.1 4216439 4216738 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 4216439..4216738 Pseudomonas putida W619 6112755 YP_001750643.1 CDS PputW619_3792 NC_010501.1 4216817 4217494 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN3908 two-component response regulator; two component transcriptional regulator 4216817..4217494 Pseudomonas putida W619 6112756 YP_001750644.1 CDS PputW619_3793 NC_010501.1 4217664 4218080 D KEGG: pen:PSEEN3909 hypothetical protein; hypothetical protein 4217664..4218080 Pseudomonas putida W619 6112757 YP_001750645.1 CDS PputW619_3794 NC_010501.1 4218139 4219479 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN3910 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4218139..4219479 Pseudomonas putida W619 6112758 YP_001750646.1 CDS PputW619_3795 NC_010501.1 4219611 4220168 R PFAM: nitroreductase; KEGG: pen:PSEEN3911 nitroreductase; nitroreductase complement(4219611..4220168) Pseudomonas putida W619 6112759 YP_001750647.1 CDS PputW619_3796 NC_010501.1 4220350 4221804 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: pen:PSEEN3912 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 4220350..4221804 Pseudomonas putida W619 6112760 YP_001750648.1 CDS PputW619_3797 NC_010501.1 4221761 4222822 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3913 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(4221761..4222822) Pseudomonas putida W619 6112761 YP_001750649.1 CDS PputW619_3798 NC_010501.1 4222978 4223289 D KEGG: pen:PSEEN3914 hypothetical protein; hypothetical protein 4222978..4223289 Pseudomonas putida W619 6112762 YP_001750650.1 CDS PputW619_3799 NC_010501.1 4223305 4224117 R PFAM: metallophosphoesterase; KEGG: pen:PSEEN3916 metallo-dependent phosphoesterase; metallophosphoesterase complement(4223305..4224117) Pseudomonas putida W619 6112763 YP_001750651.1 CDS PputW619_3800 NC_010501.1 4224244 4225017 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN3917 transcriptional regulator, AraC family; AraC family transcriptional regulator 4224244..4225017 Pseudomonas putida W619 6112764 YP_001750652.1 CDS PputW619_3801 NC_010501.1 4225128 4226018 D PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: pen:PSEEN3918 hypothetical protein; hypothetical protein 4225128..4226018 Pseudomonas putida W619 6112765 YP_001750653.1 CDS PputW619_3802 NC_010501.1 4226019 4226300 R TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: pen:PSEEN3919 hypothetical protein; putative selenoprotein complement(4226019..4226300) Pseudomonas putida W619 6112766 YP_001750654.1 CDS PputW619_3803 NC_010501.1 4226367 4228550 D PFAM: Patatin; surface antigen variable number repeat protein; KEGG: pen:PSEEN3920 hypothetical protein; patatin 4226367..4228550 Pseudomonas putida W619 6112767 YP_001750655.1 CDS PputW619_3804 NC_010501.1 4228572 4229009 R PFAM: regulatory protein MarR; KEGG: pen:PSEEN3921 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4228572..4229009) Pseudomonas putida W619 6112768 YP_001750656.1 CDS PputW619_3805 NC_010501.1 4229151 4231295 R KEGG: pen:PSEEN3922 ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ complement(4229151..4231295) Pseudomonas putida W619 6112769 YP_001750657.1 CDS PputW619_3806 NC_010501.1 4231540 4232127 D TIGRFAM: yecA family protein; KEGG: pen:PSEEN3923 hypothetical protein; yecA family protein 4231540..4232127 Pseudomonas putida W619 6112770 YP_001750658.1 CDS PputW619_3807 NC_010501.1 4232135 4232500 D PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN3924 hypothetical protein; hypothetical protein 4232135..4232500 Pseudomonas putida W619 6112771 YP_001750659.1 CDS PputW619_3808 NC_010501.1 4232583 4240157 R TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: pfo:Pfl_1463 VCBS; outer membrane adhesin-like protein complement(4232583..4240157) Pseudomonas putida W619 6112772 YP_001750660.1 CDS PputW619_3809 NC_010501.1 4240624 4241997 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN3927 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 4240624..4241997 Pseudomonas putida W619 6112773 YP_001750661.1 CDS PputW619_3810 NC_010501.1 4242076 4244211 D KEGG: pen:PSEEN3928 multidrug/toxin efflux protein, ATP binding and membrane protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 4242076..4244211 Pseudomonas putida W619 6112774 YP_001750662.1 CDS PputW619_3811 NC_010501.1 4244221 4245576 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3929 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 4244221..4245576 Pseudomonas putida W619 6112775 YP_001750663.1 CDS PputW619_3812 NC_010501.1 4245764 4246363 R PFAM: DTW domain containing protein; KEGG: pen:PSEEN3930 hypothetical protein; DTW domain-containing protein complement(4245764..4246363) Pseudomonas putida W619 6112776 YP_001750664.1 CDS PputW619_3813 NC_010501.1 4246439 4248004 R KEGG: pen:PSEEN3931 aerotaxis receptor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(4246439..4248004) Pseudomonas putida W619 6112777 YP_001750665.1 CDS PputW619_3814 NC_010501.1 4248142 4249035 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3932 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4248142..4249035) Pseudomonas putida W619 6112778 YP_001750666.1 CDS PputW619_3815 NC_010501.1 4249260 4250210 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pen:PSEEN3933 agmatinase; agmatinase 4249260..4250210 Pseudomonas putida W619 6112779 YP_001750667.1 CDS PputW619_3816 NC_010501.1 4250344 4251723 D PFAM: Na+/solute symporter; KEGG: pen:PSEEN3934 sodium-solute symporter; Na+/solute symporter 4250344..4251723 Pseudomonas putida W619 6112780 YP_001750668.1 CDS PputW619_3817 NC_010501.1 4251873 4252001 R KEGG: pen:PSEEN3935 hypothetical protein; hypothetical protein complement(4251873..4252001) Pseudomonas putida W619 6112781 YP_001750669.1 CDS PputW619_3818 NC_010501.1 4252126 4253019 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3936 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4252126..4253019) Pseudomonas putida W619 6112782 YP_001750670.1 CDS PputW619_3819 NC_010501.1 4253126 4254295 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pen:PSEEN3937 hypothetical protein; hypothetical protein 4253126..4254295 Pseudomonas putida W619 6112783 YP_001750671.1 CDS PputW619_3820 NC_010501.1 4254425 4255351 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3940 hypothetical protein; hypothetical protein complement(4254425..4255351) Pseudomonas putida W619 6112784 YP_001750672.1 CDS PputW619_3821 NC_010501.1 4255457 4255852 R KEGG: pfl:PFL_1560 hypothetical protein; hypothetical protein complement(4255457..4255852) Pseudomonas putida W619 6112785 YP_001750673.1 CDS PputW619_3822 NC_010501.1 4255930 4256184 R KEGG: pfl:PFL_0170 hypothetical protein; hypothetical protein complement(4255930..4256184) Pseudomonas putida W619 6112786 YP_001750674.1 CDS PputW619_3823 NC_010501.1 4256162 4256440 R PFAM: protein of unknown function DUF497; KEGG: pen:PSEEN3950 hypothetical protein; hypothetical protein complement(4256162..4256440) Pseudomonas putida W619 6112787 YP_001750675.1 CDS PputW619_3824 NC_010501.1 4256612 4257415 R PFAM: regulatory protein LuxR; KEGG: pde:Pden_3582 response regulator receiver protein; LuxR family transcriptional regulator complement(4256612..4257415) Pseudomonas putida W619 6112788 YP_001750676.1 CDS PputW619_3826 NC_010501.1 4258717 4258989 D KEGG: pen:PSEEN3948 hypothetical protein; hypothetical protein 4258717..4258989 Pseudomonas putida W619 6112790 YP_001750677.1 CDS PputW619_3827 NC_010501.1 4259109 4260467 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pen:PSEEN3951 ATP-dependent RNA helicase, DEAD box family; DEAD/DEAH box helicase complement(4259109..4260467) Pseudomonas putida W619 6112791 YP_001750678.1 CDS PputW619_3828 NC_010501.1 4260573 4261874 D PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN3952 transporter with mechanosensitive ion channel; mechanosensitive ion channel MscS 4260573..4261874 Pseudomonas putida W619 6112792 YP_001750679.1 CDS PputW619_3829 NC_010501.1 4262131 4263066 R PFAM: Auxin Efflux Carrier; KEGG: pmy:Pmen_0140 auxin efflux carrier; auxin efflux carrier complement(4262131..4263066) Pseudomonas putida W619 6112793 YP_001750680.1 CDS PputW619_3830 NC_010501.1 4263068 4263943 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN3958 transport protein; carboxylate/amino acid/amine transporter complement(4263068..4263943) Pseudomonas putida W619 6112794 YP_001750681.1 CDS PputW619_3831 NC_010501.1 4264132 4264731 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pen:PSEEN3959 acyl carrier protein phosphodiesterase; NAD(P)H dehydrogenase complement(4264132..4264731) Pseudomonas putida W619 6112795 YP_001750682.1 CDS PputW619_3832 NC_010501.1 4264841 4265155 R KEGG: pen:PSEEN3960 hypothetical protein; hypothetical protein complement(4264841..4265155) Pseudomonas putida W619 6112796 YP_001750683.1 CDS PputW619_3833 NC_010501.1 4265204 4266127 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3961 transcriptional regulator, LysR family; LysR family transcriptional regulator 4265204..4266127 Pseudomonas putida W619 6112797 YP_001750684.1 CDS PputW619_3834 NC_010501.1 4266141 4266953 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3962 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4266141..4266953 Pseudomonas putida W619 6112798 YP_001750685.1 CDS PputW619_3835 NC_010501.1 4266947 4267504 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pen:PSEEN3963 peptidyl-prolyl cis-trans isomerase A (rotamase A); cyclophilin type peptidyl-prolyl cis-trans isomerase 4266947..4267504 Pseudomonas putida W619 6112799 YP_001750686.1 CDS PputW619_3836 NC_010501.1 4267568 4269400 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN3964 ABC transporter, ATP-binding protein/permease protein; ABC transporter-like protein 4267568..4269400 Pseudomonas putida W619 6112800 YP_001750687.1 CDS PputW619_3837 NC_010501.1 4269414 4270541 R PFAM: protein of unknown function DUF482; KEGG: pen:PSEEN3965 hypothetical protein; hypothetical protein complement(4269414..4270541) Pseudomonas putida W619 6112801 YP_001750688.1 CDS PputW619_3838 NC_010501.1 4270803 4272047 D KEGG: pen:PSEEN3966 hypothetical protein; hypothetical protein 4270803..4272047 Pseudomonas putida W619 6112802 YP_001750689.1 CDS PputW619_3839 NC_010501.1 4272176 4273297 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(4272176..4273297) Pseudomonas putida W619 6112803 YP_001750690.1 CDS PputW619_3840 NC_010501.1 4273443 4277348 R KEGG: pen:PSEEN3969 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(4273443..4277348) Pseudomonas putida W619 6112804 YP_001750691.1 CDS PputW619_3841 NC_010501.1 4277535 4277726 D KEGG: pen:PSEEN3970 hypothetical protein; hypothetical protein 4277535..4277726 Pseudomonas putida W619 6112805 YP_001750692.1 CDS PputW619_3842 NC_010501.1 4277781 4279145 D PFAM: glutamine synthetase catalytic region; KEGG: pen:PSEEN3971 glutamine synthetase; glutamate--putrescine ligase 4277781..4279145 Pseudomonas putida W619 6112806 YP_001750693.1 CDS PputW619_3843 NC_010501.1 4279176 4280483 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN3972 oxidoreductase; FAD dependent oxidoreductase 4279176..4280483 Pseudomonas putida W619 6112807 YP_001750694.1 CDS PputW619_3844 NC_010501.1 4280584 4282281 R activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase complement(4280584..4282281) Pseudomonas putida W619 6112808 YP_001750695.1 CDS PputW619_3845 NC_010501.1 4282585 4284273 R Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase complement(4282585..4284273) Pseudomonas putida W619 6112809 YP_001750696.1 CDS PputW619_3846 NC_010501.1 4284482 4285426 D PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN3976 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold family protein 4284482..4285426 Pseudomonas putida W619 6112810 YP_001750697.1 CDS PputW619_3847 NC_010501.1 4285460 4285930 D PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN3977 enoyl-CoA hydratase, R-specific; dehydratase 4285460..4285930 Pseudomonas putida W619 6112811 YP_001750698.1 CDS PputW619_3848 NC_010501.1 4285972 4287210 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN3978 RNA polymerase sigma-70 factor, ECF subfamily; RNA polymerase ECF-subfamily sigma factor complement(4285972..4287210) Pseudomonas putida W619 6112812 YP_001750699.1 CDS PputW619_3849 NC_010501.1 4287210 4287695 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pen:PSEEN3979 hypothetical protein; activator of Hsp90 ATPase 1 family protein complement(4287210..4287695) Pseudomonas putida W619 6112813 YP_001750700.1 CDS PputW619_3850 NC_010501.1 4287717 4288061 R PFAM: DGPFAETKE family protein; KEGG: pen:PSEEN3980 hypothetical protein; DGPFAETKE family protein complement(4287717..4288061) Pseudomonas putida W619 6112814 YP_001750701.1 CDS PputW619_3851 NC_010501.1 4288106 4288483 R KEGG: pen:PSEEN3981 hypothetical protein; hypothetical protein complement(4288106..4288483) Pseudomonas putida W619 6112815 YP_001750702.1 CDS PputW619_3852 NC_010501.1 4288656 4289300 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN3997 transporter, LysE family; lysine exporter protein LysE/YggA complement(4288656..4289300) Pseudomonas putida W619 6112816 YP_001750703.1 CDS PputW619_3853 NC_010501.1 4289379 4289714 R PFAM: HicB family protein; KEGG: eba:ebA6033 conserved hypothetical protein, predicted HicB family potentially involved in pilus regulation; HicB family protein complement(4289379..4289714) Pseudomonas putida W619 6112817 YP_001750704.1 CDS PputW619_3854 NC_010501.1 4289711 4289875 R KEGG: rsq:Rsph17025_4181 hypothetical protein; hypothetical protein complement(4289711..4289875) Pseudomonas putida W619 6112818 YP_001750705.1 CDS PputW619_3855 NC_010501.1 4290010 4290975 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN3999 threonine dehydratase; hypothetical protein complement(4290010..4290975) Pseudomonas putida W619 6112819 YP_001750706.1 CDS PputW619_3856 NC_010501.1 4291052 4292413 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN4000 transcriptional regulator, GntR family; transcriptional regulator 4291052..4292413 Pseudomonas putida W619 6112820 YP_001750707.1 CDS PputW619_3857 NC_010501.1 4292480 4292737 R KEGG: pen:PSEEN4001 hypothetical protein; hypothetical protein complement(4292480..4292737) Pseudomonas putida W619 6112821 YP_001750708.1 CDS PputW619_3858 NC_010501.1 4293014 4293463 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4002 acetyltransferase, GNAT family; N-acetyltransferase GCN5 4293014..4293463 Pseudomonas putida W619 6112822 YP_001750709.1 CDS PputW619_3859 NC_010501.1 4293418 4293954 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(4293418..4293954) Pseudomonas putida W619 6112823 YP_001750710.1 CDS PputW619_3860 NC_010501.1 4293951 4294904 R PFAM: ribonuclease BN; KEGG: pen:PSEEN4004 ribonuclease BN; ribonuclease BN complement(4293951..4294904) Pseudomonas putida W619 6112824 YP_001750711.1 CDS PputW619_3861 NC_010501.1 4295059 4295238 R PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; CsbD family protein complement(4295059..4295238) Pseudomonas putida W619 6112825 YP_001750712.1 CDS PputW619_3862 NC_010501.1 4295484 4296953 D KEGG: aci:ACIAD1714 3-dehydroshikimate dehydratase (DHS dehydratase) (DHSase); 3-dehydroshikimate dehydratase 4295484..4296953 Pseudomonas putida W619 6112826 YP_001750713.1 CDS PputW619_3863 NC_010501.1 4297065 4297445 D KEGG: pen:PSEEN4006 hypothetical protein; hypothetical protein 4297065..4297445 Pseudomonas putida W619 6112827 YP_001750714.1 CDS PputW619_3864 NC_010501.1 4297448 4298284 R SMART: RNA binding S1 domain protein; KEGG: pen:PSEEN4007 hypothetical protein; RNA-binding S1 domain-containing protein complement(4297448..4298284) Pseudomonas putida W619 6112828 YP_001750715.1 CDS PputW619_3865 NC_010501.1 4298417 4299277 D KEGG: pen:PSEEN4008 lipoprotein; lipoprotein 4298417..4299277 Pseudomonas putida W619 6112829 YP_001750716.1 CDS aceK NC_010501.1 4299311 4301020 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(4299311..4301020) Pseudomonas putida W619 6112830 YP_001750717.1 CDS PputW619_3867 NC_010501.1 4301122 4302054 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4010 hypothetical protein; hypothetical protein 4301122..4302054 Pseudomonas putida W619 6112831 YP_001750718.1 CDS PputW619_3868 NC_010501.1 4302156 4302626 D KEGG: pfl:PFL_0005 hypothetical protein; hypothetical protein 4302156..4302626 Pseudomonas putida W619 6112832 YP_001750719.1 CDS PputW619_3869 NC_010501.1 4302631 4303512 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4011 hypothetical protein; hypothetical protein complement(4302631..4303512) Pseudomonas putida W619 6112833 YP_001750720.1 CDS PputW619_3870 NC_010501.1 4303915 4304850 R PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pen:PSEEN4012 aspartyl/asparaginyl beta-hydroxylase; aspartyl/asparaginyl beta-hydroxylase complement(4303915..4304850) Pseudomonas putida W619 6112834 YP_001750721.1 CDS PputW619_3871 NC_010501.1 4305020 4305994 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pen:PSEEN4013 cysteine synthase A; cysteine synthase A complement(4305020..4305994) Pseudomonas putida W619 6112835 YP_001750722.1 CDS PputW619_3872 NC_010501.1 4306127 4307200 D KEGG: pfl:PFL_1518 hypothetical protein; hypothetical protein 4306127..4307200 Pseudomonas putida W619 6112836 YP_001750723.1 CDS PputW619_3873 NC_010501.1 4307332 4308177 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN4014 ATPase, AAA family; ATPase 4307332..4308177 Pseudomonas putida W619 6112837 YP_001750724.1 CDS PputW619_3874 NC_010501.1 4308190 4309368 D KEGG: pen:PSEEN4015 hypothetical protein; hypothetical protein 4308190..4309368 Pseudomonas putida W619 6112838 YP_001750725.1 CDS PputW619_3875 NC_010501.1 4309478 4310395 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: pen:PSEEN4016 allophanate hydrolase subunit 2; urea amidolyase-like protein complement(4309478..4310395) Pseudomonas putida W619 6112839 YP_001750726.1 CDS PputW619_3876 NC_010501.1 4310392 4311087 R PFAM: Allophanate hydrolase subunit 1; KEGG: pen:PSEEN4017 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 complement(4310392..4311087) Pseudomonas putida W619 6112840 YP_001750727.1 CDS PputW619_3877 NC_010501.1 4311084 4311863 R PFAM: LamB/YcsF family protein; KEGG: pen:PSEEN4018 hypothetical protein; LamB/YcsF family protein complement(4311084..4311863) Pseudomonas putida W619 6112841 YP_001750728.1 CDS PputW619_3878 NC_010501.1 4311873 4313159 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4019 transporter, MFS family; major facilitator transporter complement(4311873..4313159) Pseudomonas putida W619 6112842 YP_001750729.1 CDS PputW619_3879 NC_010501.1 4313289 4314200 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4020 transcriptional regulator, LysR family; LysR family transcriptional regulator 4313289..4314200 Pseudomonas putida W619 6112843 YP_001750730.1 CDS PputW619_3880 NC_010501.1 4314526 4315137 D KEGG: psp:PSPPH_5070 hypothetical protein; hypothetical protein 4314526..4315137 Pseudomonas putida W619 6112844 YP_001750731.1 CDS PputW619_3881 NC_010501.1 4315143 4319303 D TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; PAAR repeat-containing protein; KEGG: psp:PSPPH_5072 rhs family protein; YD repeat-containing protein 4315143..4319303 Pseudomonas putida W619 6112845 YP_001750732.1 CDS PputW619_3882 NC_010501.1 4320042 4320506 D KEGG: psb:Psyr_4989 hypothetical protein; hypothetical protein 4320042..4320506 Pseudomonas putida W619 6112846 YP_001750733.1 CDS PputW619_3884 NC_010501.1 4321807 4322502 D PFAM: RHS protein; KEGG: ypp:YPDSF_0215 hypothetical protein; RHS protein 4321807..4322502 Pseudomonas putida W619 6112848 YP_001750734.1 CDS PputW619_3885 NC_010501.1 4322507 4322980 D KEGG: ypn:YPN_3562 hypothetical protein; hypothetical protein 4322507..4322980 Pseudomonas putida W619 6112849 YP_001750735.1 CDS PputW619_3886 NC_010501.1 4323361 4323723 D KEGG: psp:PSPPH_4833 rhs family protein; hypothetical protein 4323361..4323723 Pseudomonas putida W619 6112850 YP_001750736.1 CDS PputW619_3887 NC_010501.1 4323677 4324198 R KEGG: pen:PSEEN4022 hypothetical protein; hypothetical protein complement(4323677..4324198) Pseudomonas putida W619 6112851 YP_001750737.1 CDS PputW619_3888 NC_010501.1 4324208 4324981 R PFAM: glutamine amidotransferase class-II; KEGG: pen:PSEEN4023 glutamine amidotransferase, class II; glutamine amidotransferase complement(4324208..4324981) Pseudomonas putida W619 6112852 YP_001750738.1 CDS PputW619_3889 NC_010501.1 4324996 4325490 R KEGG: pen:PSEEN4024 hypothetical protein; hypothetical protein complement(4324996..4325490) Pseudomonas putida W619 6112853 YP_001750739.1 CDS PputW619_3890 NC_010501.1 4325573 4327615 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: pen:PSEEN4025 peptidase, S9 family; oligopeptidase B 4325573..4327615 Pseudomonas putida W619 6112854 YP_001750740.1 CDS PputW619_3891 NC_010501.1 4327729 4328196 D PFAM: cyclic nucleotide-binding; KEGG: pen:PSEEN4026 hypothetical protein; cyclic nucleotide-binding protein 4327729..4328196 Pseudomonas putida W619 6112855 YP_001750741.1 CDS PputW619_3892 NC_010501.1 4328193 4328471 R KEGG: pen:PSEEN4027 hypothetical protein; hypothetical protein complement(4328193..4328471) Pseudomonas putida W619 6112856 YP_001750742.1 CDS PputW619_3893 NC_010501.1 4328603 4328974 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pfl:PFL_1503 hypothetical protein; hypothetical protein 4328603..4328974 Pseudomonas putida W619 6112857 YP_001750743.1 CDS PputW619_3894 NC_010501.1 4329115 4329516 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN4029 hypothetical protein; tRNA/rRNA methyltransferase SpoU 4329115..4329516 Pseudomonas putida W619 6112858 YP_001750744.1 CDS PputW619_3895 NC_010501.1 4329632 4329973 D KEGG: pfo:Pfl_1394 hypothetical protein; hypothetical protein 4329632..4329973 Pseudomonas putida W619 6112859 YP_001750745.1 CDS PputW619_3896 NC_010501.1 4330020 4331228 R KEGG: pen:PSEEN4030 hypothetical protein; hypothetical protein complement(4330020..4331228) Pseudomonas putida W619 6112860 YP_001750746.1 CDS PputW619_3897 NC_010501.1 4331270 4331758 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN4031 hypothetical protein; hypothetical protein complement(4331270..4331758) Pseudomonas putida W619 6112861 YP_001750747.1 CDS PputW619_3898 NC_010501.1 4331906 4332838 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pen:PSEEN4033 D-isomer specific 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(4331906..4332838) Pseudomonas putida W619 6112862 YP_001750748.1 CDS PputW619_3899 NC_010501.1 4332917 4333210 R PFAM: protein of unknown function DUF709; KEGG: pen:PSEEN4034 hypothetical protein; hypothetical protein complement(4332917..4333210) Pseudomonas putida W619 6112863 YP_001750749.1 CDS PputW619_3900 NC_010501.1 4333207 4334340 R TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: pen:PSEEN4035 ribonuclease D, processes tRNA; ribonuclease D complement(4333207..4334340) Pseudomonas putida W619 6112864 YP_001750750.1 CDS PputW619_3901 NC_010501.1 4334444 4334809 R PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pen:PSEEN4037 5-carboxymethyl-2-hydroxymuconate delta isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase complement(4334444..4334809) Pseudomonas putida W619 6112865 YP_001750751.1 CDS PputW619_3902 NC_010501.1 4334925 4335161 D KEGG: pen:PSEEN4038 hypothetical protein; hypothetical protein 4334925..4335161 Pseudomonas putida W619 6112866 YP_001750752.1 CDS PputW619_3903 NC_010501.1 4335230 4336402 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN4039 cystathionine gamma-synthase; cystathionine gamma-lyase complement(4335230..4336402) Pseudomonas putida W619 6112867 YP_001750753.1 CDS PputW619_3904 NC_010501.1 4336537 4336998 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN4041 transcriptional regulator, AsnC familiy; AsnC family transcriptional regulator 4336537..4336998 Pseudomonas putida W619 6112868 YP_001750754.1 CDS PputW619_3905 NC_010501.1 4337022 4339349 R TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN4042 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit complement(4337022..4339349) Pseudomonas putida W619 6112869 YP_001750755.1 CDS moaA NC_010501.1 4339670 4340674 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 4339670..4340674 Pseudomonas putida W619 6112870 YP_001750756.1 CDS PputW619_3907 NC_010501.1 4340695 4341594 D PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN4044 hypothetical protein; hypothetical protein 4340695..4341594 Pseudomonas putida W619 6112871 YP_001750757.1 CDS PputW619_3908 NC_010501.1 4341699 4342238 R TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: pen:PSEEN4045 molybdopterin biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(4341699..4342238) Pseudomonas putida W619 6112872 YP_001750758.1 CDS PputW619_3909 NC_010501.1 4342378 4343265 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4046 transcriptional regulator, LysR family; LysR family transcriptional regulator 4342378..4343265 Pseudomonas putida W619 6112873 YP_001750759.1 CDS PputW619_3910 NC_010501.1 4343349 4344563 R hypothetical protein complement(4343349..4344563) Pseudomonas putida W619 6112874 YP_001750760.1 CDS PputW619_3911 NC_010501.1 4344574 4346463 R KEGG: mmu:100042292 similar to CG10953-PA; hypothetical protein complement(4344574..4346463) Pseudomonas putida W619 6112875 YP_001750761.1 CDS PputW619_3912 NC_010501.1 4346472 4347329 R PFAM: 17 kDa surface antigen; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: psp:PSPPH_0908 lipoprotein, putative; SH3 type 3 domain-containing protein complement(4346472..4347329) Pseudomonas putida W619 6112876 YP_001750762.1 CDS PputW619_3913 NC_010501.1 4347932 4349023 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN4054 xenobiotic reductase A; NADH:flavin oxidoreductase complement(4347932..4349023) Pseudomonas putida W619 6112877 YP_001750763.1 CDS PputW619_3914 NC_010501.1 4349073 4349408 D PFAM: regulatory protein ArsR; KEGG: pen:PSEEN4055 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 4349073..4349408 Pseudomonas putida W619 6112878 YP_001750764.1 CDS PputW619_3915 NC_010501.1 4349490 4351127 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(4349490..4351127) Pseudomonas putida W619 6112879 YP_001750765.1 CDS PputW619_3916 NC_010501.1 4351456 4351647 R KEGG: pen:PSEEN4057 hypothetical protein; hypothetical protein complement(4351456..4351647) Pseudomonas putida W619 6112880 YP_001750766.1 CDS PputW619_3917 NC_010501.1 4352174 4352437 D KEGG: pen:PSEEN2483 hypothetical protein; hypothetical protein 4352174..4352437 Pseudomonas putida W619 6112881 YP_001750767.1 CDS PputW619_3918 NC_010501.1 4353251 4353907 D KEGG: noc:Noc_0408 hypothetical protein; hypothetical protein 4353251..4353907 Pseudomonas putida W619 6112882 YP_001750768.1 CDS PputW619_3919 NC_010501.1 4353908 4354168 R KEGG: pap:PSPA7_0775 lipoprotein, putative; putative lipoprotein complement(4353908..4354168) Pseudomonas putida W619 6112883 YP_001750769.1 CDS PputW619_3920 NC_010501.1 4354165 4354527 R KEGG: pap:PSPA7_2431 hypothetical protein; hypothetical protein complement(4354165..4354527) Pseudomonas putida W619 6112884 YP_001750770.1 CDS PputW619_3921 NC_010501.1 4354524 4354961 R KEGG: pmy:Pmen_3951 hypothetical protein; hypothetical protein complement(4354524..4354961) Pseudomonas putida W619 6112885 YP_001750771.1 CDS PputW619_3922 NC_010501.1 4355050 4355412 D KEGG: psb:Psyr_2860 hypothetical protein; hypothetical protein 4355050..4355412 Pseudomonas putida W619 6112886 YP_001750772.1 CDS PputW619_3923 NC_010501.1 4355480 4355803 D KEGG: psb:Psyr_2860 hypothetical protein; hypothetical protein 4355480..4355803 Pseudomonas putida W619 6112887 YP_001750773.1 CDS PputW619_3924 NC_010501.1 4355813 4356043 R hypothetical protein complement(4355813..4356043) Pseudomonas putida W619 6112888 YP_001750774.1 CDS PputW619_3925 NC_010501.1 4356066 4356758 R hypothetical protein complement(4356066..4356758) Pseudomonas putida W619 6112889 YP_001750775.1 CDS PputW619_3926 NC_010501.1 4356758 4357051 R hypothetical protein complement(4356758..4357051) Pseudomonas putida W619 6112890 YP_001750776.1 CDS PputW619_3927 NC_010501.1 4357067 4363090 R PFAM: Protein of unknown function DUF1983; KEGG: psb:Psyr_2772 fibronectin, type III; hypothetical protein complement(4357067..4363090) Pseudomonas putida W619 6112891 YP_001750777.1 CDS PputW619_3928 NC_010501.1 4363149 4363778 R PFAM: lambda tail assembly I; KEGG: psb:Psyr_2774 bacteriophage lambda tail assembly I; lambda tail assembly I complement(4363149..4363778) Pseudomonas putida W619 6112892 YP_001750778.1 CDS PputW619_3929 NC_010501.1 4363821 4364171 R KEGG: ype:YPO2128 putative phage-related lipoprotein; putative phage-related lipoprotein complement(4363821..4364171) Pseudomonas putida W619 6112893 YP_001750779.1 CDS PputW619_3930 NC_010501.1 4364204 4364959 R PFAM: NLP/P60 protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: psb:Psyr_2777 NLP/P60; NLP/P60 protein complement(4364204..4364959) Pseudomonas putida W619 6112894 YP_001750780.1 CDS PputW619_3931 NC_010501.1 4364962 4365711 R TIGRFAM: phage minor tail protein L; PFAM: minor tail protein L; KEGG: pap:PSPA7_2419 phage minor tail protein L; phage minor tail protein L complement(4364962..4365711) Pseudomonas putida W619 6112895 YP_001750781.1 CDS PputW619_3932 NC_010501.1 4365708 4366046 R PFAM: minor tail family protein; KEGG: pap:PSPA7_2418 phage minor tail protein; minor tail family protein complement(4365708..4366046) Pseudomonas putida W619 6112896 YP_001750782.1 CDS PputW619_3933 NC_010501.1 4366046 4369360 R TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: pfl:PFL_3753 prophage LambdaSo, tail length tape meausure protein, putative; lambda family phage tail tape measure protein complement(4366046..4369360) Pseudomonas putida W619 6112897 YP_001750783.1 CDS PputW619_3934 NC_010501.1 4369405 4369638 R hypothetical protein complement(4369405..4369638) Pseudomonas putida W619 6112898 YP_001750784.1 CDS PputW619_3935 NC_010501.1 4369635 4369979 R hypothetical protein complement(4369635..4369979) Pseudomonas putida W619 6112899 YP_001750785.1 CDS PputW619_3936 NC_010501.1 4370020 4370520 R KEGG: mes:Meso_1894 hypothetical protein; hypothetical protein complement(4370020..4370520) Pseudomonas putida W619 6112900 YP_001750786.1 CDS PputW619_3937 NC_010501.1 4370576 4370962 R KEGG: rpc:RPC_1815 gene transfer agent (GTA) orfg8; hypothetical protein complement(4370576..4370962) Pseudomonas putida W619 6112901 YP_001750787.1 CDS PputW619_3938 NC_010501.1 4370955 4371455 R TIGRFAM: phage protein, HK97 gp10 family; HK97 family phage protein complement(4370955..4371455) Pseudomonas putida W619 6112902 YP_001750788.1 CDS PputW619_3939 NC_010501.1 4371459 4371638 R hypothetical protein complement(4371459..4371638) Pseudomonas putida W619 6112903 YP_001750789.1 CDS PputW619_3940 NC_010501.1 4371647 4371973 R TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: dvu:DVU1497 head-tail adaptor, putative; phage head-tail adaptor complement(4371647..4371973) Pseudomonas putida W619 6112904 YP_001750790.1 CDS PputW619_3941 NC_010501.1 4371973 4372272 R TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: asu:Asuc_1241 uncharacterized phage protein; phage protein complement(4371973..4372272) Pseudomonas putida W619 6112905 YP_001750791.1 CDS PputW619_3942 NC_010501.1 4372273 4372644 R KEGG: ncr:NCU07868.1 hypothetical protein; hypothetical protein complement(4372273..4372644) Pseudomonas putida W619 6112906 YP_001750792.1 CDS PputW619_3943 NC_010501.1 4372700 4373902 R TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: rsh:Rsph17029_3318 phage major capsid protein, HK97 family; HK97 family phage major capsid protein complement(4372700..4373902) Pseudomonas putida W619 6112907 YP_001750793.1 CDS PputW619_3944 NC_010501.1 4373899 4374540 R TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: xau:Xaut_3708 phage prohead protease, HK97 family; HK97 family phage prohead protease complement(4373899..4374540) Pseudomonas putida W619 6112908 YP_001750794.1 CDS PputW619_3945 NC_010501.1 4374527 4375741 R TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: sgl:SG0723 phage portal protein; HK97 family phage portal protein complement(4374527..4375741) Pseudomonas putida W619 6112909 YP_001750795.1 CDS PputW619_3946 NC_010501.1 4375744 4377432 R PFAM: Terminase; KEGG: ecs:ECs2251 putative terminase large subunit; terminase complement(4375744..4377432) Pseudomonas putida W619 6112910 YP_001750796.1 CDS PputW619_3947 NC_010501.1 4377429 4377962 R KEGG: bte:BTH_II1043 hypothetical protein; hypothetical protein complement(4377429..4377962) Pseudomonas putida W619 6112911 YP_001750797.1 CDS PputW619_3948 NC_010501.1 4378121 4378459 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_A0538 hypothetical protein; HNH endonuclease complement(4378121..4378459) Pseudomonas putida W619 6112912 YP_001750798.1 CDS PputW619_3949 NC_010501.1 4378459 4378653 R hypothetical protein complement(4378459..4378653) Pseudomonas putida W619 6112913 YP_001750799.1 CDS PputW619_3950 NC_010501.1 4378703 4379035 R TIGRFAM: phage holin, lambda family; PFAM: Holin phage lambda; KEGG: pfl:PFL_3770 holin, lambda family; phage holin complement(4378703..4379035) Pseudomonas putida W619 6112914 YP_001750800.1 CDS PputW619_3951 NC_010501.1 4379920 4380279 R KEGG: sdn:Sden_2835 hypothetical protein; hypothetical protein complement(4379920..4380279) Pseudomonas putida W619 6112915 YP_001750801.1 CDS PputW619_3952 NC_010501.1 4380430 4380819 R KEGG: hch:HCH_00599 hypothetical protein; hypothetical protein complement(4380430..4380819) Pseudomonas putida W619 6112916 YP_001750802.1 CDS PputW619_3953 NC_010501.1 4380816 4381103 R hypothetical protein complement(4380816..4381103) Pseudomonas putida W619 6112917 YP_001750803.1 CDS PputW619_3954 NC_010501.1 4381100 4381630 R hypothetical protein complement(4381100..4381630) Pseudomonas putida W619 6112918 YP_001750804.1 CDS PputW619_3955 NC_010501.1 4381617 4382999 R PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: pmy:Pmen_0649 replicative DNA helicase; DnaB domain-containing protein complement(4381617..4382999) Pseudomonas putida W619 6112919 YP_001750805.1 CDS PputW619_3956 NC_010501.1 4382996 4383778 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bpl:BURPS1106A_1434 DNA replication protein DnaC, putative; IstB ATP binding domain-containing protein complement(4382996..4383778) Pseudomonas putida W619 6112920 YP_001750806.1 CDS PputW619_3957 NC_010501.1 4383775 4384569 R KEGG: pna:Pnap_2260 hypothetical protein; hypothetical protein complement(4383775..4384569) Pseudomonas putida W619 6112921 YP_001750807.1 CDS PputW619_3958 NC_010501.1 4384566 4384796 R hypothetical protein complement(4384566..4384796) Pseudomonas putida W619 6112922 YP_001750808.1 CDS PputW619_3959 NC_010501.1 4384793 4385434 R hypothetical protein complement(4384793..4385434) Pseudomonas putida W619 6112923 YP_001750809.1 CDS PputW619_3960 NC_010501.1 4385431 4386195 R KEGG: mgm:Mmc1_2768 hypothetical protein; hypothetical protein complement(4385431..4386195) Pseudomonas putida W619 6112924 YP_001750810.1 CDS PputW619_3961 NC_010501.1 4386192 4386485 R hypothetical protein complement(4386192..4386485) Pseudomonas putida W619 6112925 YP_001750811.1 CDS PputW619_3962 NC_010501.1 4386482 4386772 R hypothetical protein complement(4386482..4386772) Pseudomonas putida W619 6112926 YP_001750812.1 CDS PputW619_3963 NC_010501.1 4386769 4387098 R hypothetical protein complement(4386769..4387098) Pseudomonas putida W619 6112927 YP_001750813.1 CDS PputW619_3964 NC_010501.1 4387936 4388715 D PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pfl:PFL_2126 transcriptional regulator, Cro/CI family; putative phage repressor 4387936..4388715 Pseudomonas putida W619 6112928 YP_001750814.1 CDS PputW619_3965 NC_010501.1 4388872 4389261 D PFAM: regulatory protein LuxR; KEGG: pen:PSEEN2243 LuxR family DNA binding protein; LuxR family transcriptional regulator 4388872..4389261 Pseudomonas putida W619 6112929 YP_001750815.1 CDS PputW619_3966 NC_010501.1 4389352 4389765 D PFAM: carbon storage regulator; KEGG: cbs:COXBURSA331_A0885 carbon storage regulator; carbon storage regulator CsrA 4389352..4389765 Pseudomonas putida W619 6112930 YP_001750816.1 CDS PputW619_3967 NC_010501.1 4390257 4390814 D KEGG: pst:PSPTO_3946 hypothetical protein; hypothetical protein 4390257..4390814 Pseudomonas putida W619 6112931 YP_001750817.1 CDS PputW619_3968 NC_010501.1 4390804 4391046 D KEGG: pst:PSPTO_3947 hypothetical protein; hypothetical protein 4390804..4391046 Pseudomonas putida W619 6112932 YP_001750818.1 CDS PputW619_3969 NC_010501.1 4391101 4391349 D hypothetical protein 4391101..4391349 Pseudomonas putida W619 6112933 YP_001750819.1 CDS PputW619_3970 NC_010501.1 4391365 4391949 R hypothetical protein complement(4391365..4391949) Pseudomonas putida W619 6112934 YP_001750820.1 CDS PputW619_3971 NC_010501.1 4392912 4393934 R PFAM: integrase family protein; KEGG: pst:PSPTO_3949 site-specific recombinase, phage integrase family; integrase family protein complement(4392912..4393934) Pseudomonas putida W619 6112935 YP_001750821.1 CDS PputW619_3972 NC_010501.1 4394181 4394891 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(4394181..4394891) Pseudomonas putida W619 6112937 YP_001750822.1 CDS PputW619_3973 NC_010501.1 4394922 4395680 R PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN4062 beta-lactamase-like; beta-lactamase domain-containing protein complement(4394922..4395680) Pseudomonas putida W619 6112938 YP_001750823.1 CDS PputW619_3974 NC_010501.1 4395681 4396799 R KEGG: pen:PSEEN4063 lipoprotein; lipoprotein complement(4395681..4396799) Pseudomonas putida W619 6112939 YP_001750824.1 CDS PputW619_3975 NC_010501.1 4396817 4397695 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(4396817..4397695) Pseudomonas putida W619 6112940 YP_001750825.1 CDS PputW619_3976 NC_010501.1 4397956 4398516 D KEGG: pen:PSEEN4066 glycine cleavage system transcriptional repressor; glycine cleavage system transcriptional repressor 4397956..4398516 Pseudomonas putida W619 6112941 YP_001750826.1 CDS PputW619_3977 NC_010501.1 4398528 4399001 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN4067 hypothetical protein; alkyl hydroperoxide reductase 4398528..4399001 Pseudomonas putida W619 6112942 YP_001750827.1 CDS PputW619_3978 NC_010501.1 4399116 4400186 R PFAM: protein of unknown function UPF0118; KEGG: pen:PSEEN4068 permease (PerM family); hypothetical protein complement(4399116..4400186) Pseudomonas putida W619 6112943 YP_001750828.1 CDS PputW619_3979 NC_010501.1 4400207 4400446 R PFAM: SirA family protein; KEGG: pen:PSEEN4069 hypothetical protein; SirA family protein complement(4400207..4400446) Pseudomonas putida W619 6112944 YP_001750829.1 CDS PputW619_3980 NC_010501.1 4400566 4402002 D PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN4070 peptidase M48 family; peptidase M48 Ste24p 4400566..4402002 Pseudomonas putida W619 6112945 YP_001750830.1 CDS PputW619_3981 NC_010501.1 4402097 4403155 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(4402097..4403155) Pseudomonas putida W619 6112946 YP_001750831.1 CDS PputW619_3982 NC_010501.1 4403454 4404962 R PFAM: protein of unknown function DUF945; KEGG: pen:PSEEN4072 hypothetical protein; hypothetical protein complement(4403454..4404962) Pseudomonas putida W619 6112947 YP_001750832.1 CDS PputW619_3983 NC_010501.1 4405511 4406863 D PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4074 amino acid transport protein (APC family); amino acid permease-associated protein 4405511..4406863 Pseudomonas putida W619 6112948 YP_001750833.1 CDS PputW619_3984 NC_010501.1 4406930 4408996 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4075 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 4406930..4408996 Pseudomonas putida W619 6112949 YP_001750834.1 CDS PputW619_3985 NC_010501.1 4409073 4410032 D PFAM: cation efflux protein; KEGG: rpa:RPA2440 cation efflux protein; cation efflux protein 4409073..4410032 Pseudomonas putida W619 6112950 YP_001750835.1 CDS PputW619_3986 NC_010501.1 4410297 4411637 D KEGG: sbm:Shew185_1994 hypothetical protein; hypothetical protein 4410297..4411637 Pseudomonas putida W619 6112951 YP_001750836.1 CDS PputW619_3987 NC_010501.1 4411642 4412133 D KEGG: sbn:Sbal195_2043 hypothetical protein; hypothetical protein 4411642..4412133 Pseudomonas putida W619 6112952 YP_001750837.1 CDS PputW619_3988 NC_010501.1 4412130 4414388 D PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: sbl:Sbal_1981 FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase 4412130..4414388 Pseudomonas putida W619 6112953 YP_001750838.1 CDS PputW619_3989 NC_010501.1 4414852 4415526 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pen:PSEEN4083 hypothetical protein; exsB protein complement(4414852..4415526) Pseudomonas putida W619 6112955 YP_001750839.1 CDS PputW619_3990 NC_010501.1 4415543 4416190 R PFAM: Radical SAM domain protein; KEGG: pen:PSEEN4084 radical activating enzyme; radical SAM domain-containing protein complement(4415543..4416190) Pseudomonas putida W619 6112956 YP_001750840.1 CDS PputW619_3991 NC_010501.1 4416350 4417165 R TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: pen:PSEEN4085 hypothetical protein; tol-pal system protein YbgF complement(4416350..4417165) Pseudomonas putida W619 6112957 YP_001750841.1 CDS PputW619_3992 NC_010501.1 4417172 4417669 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN4086 peptidoglycan-associated lipoprotein precursor; peptidoglycan-associated lipoprotein complement(4417172..4417669) Pseudomonas putida W619 6112958 YP_001750842.1 CDS tolB NC_010501.1 4417724 4418995 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(4417724..4418995) Pseudomonas putida W619 6112959 YP_001750843.1 CDS PputW619_3994 NC_010501.1 4419022 4420098 R TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: pen:PSEEN4088 biopolymer transport protein TolA; protein TolA complement(4419022..4420098) Pseudomonas putida W619 6112960 YP_001750844.1 CDS PputW619_3995 NC_010501.1 4420098 4420550 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pen:PSEEN4089 biopolymer transport protein TolR; protein TolR complement(4420098..4420550) Pseudomonas putida W619 6112961 YP_001750845.1 CDS PputW619_3996 NC_010501.1 4420565 4421260 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN4090 biopolymer transport protein TolQ; protein TolQ complement(4420565..4421260) Pseudomonas putida W619 6112962 YP_001750846.1 CDS PputW619_3997 NC_010501.1 4421263 4421715 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4091 thioesterase; tol-pal system-associated acyl-CoA thioesterase complement(4421263..4421715) Pseudomonas putida W619 6112963 YP_001750847.1 CDS ruvB NC_010501.1 4421841 4422887 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(4421841..4422887) Pseudomonas putida W619 6112964 YP_001750848.1 CDS ruvA NC_010501.1 4422884 4423501 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(4422884..4423501) Pseudomonas putida W619 6112965 YP_001750849.1 CDS ruvC NC_010501.1 4423611 4424135 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(4423611..4424135) Pseudomonas putida W619 6112966 YP_001750850.1 CDS PputW619_4001 NC_010501.1 4424331 4425077 R PFAM: protein of unknown function DUF28; KEGG: pen:PSEEN4095 hypothetical protein; hypothetical protein complement(4424331..4425077) Pseudomonas putida W619 6112967 YP_001750851.1 CDS aspS NC_010501.1 4425189 4426964 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(4425189..4426964) Pseudomonas putida W619 6112968 YP_001750852.1 CDS PputW619_4003 NC_010501.1 4427060 4427281 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: pen:PSEEN4097 hypothetical protein; FmdB family regulatory protein complement(4427060..4427281) Pseudomonas putida W619 6112969 YP_001750853.1 CDS PputW619_4004 NC_010501.1 4427375 4427704 R KEGG: pen:PSEEN4098 hypothetical protein; hypothetical protein complement(4427375..4427704) Pseudomonas putida W619 6112970 YP_001750854.1 CDS PputW619_4005 NC_010501.1 4427894 4428367 R PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN4099 DNA-binding stress protein, Dps family; ferritin Dps family protein complement(4427894..4428367) Pseudomonas putida W619 6112971 YP_001750855.1 CDS PputW619_4006 NC_010501.1 4428649 4429242 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4100 cold shock protein; cold-shock DNA-binding domain-containing protein 4428649..4429242 Pseudomonas putida W619 6112972 YP_001750856.1 CDS PputW619_4007 NC_010501.1 4429282 4429488 R PFAM: SlyX family protein; KEGG: pen:PSEEN4101 hypothetical protein; hypothetical protein complement(4429282..4429488) Pseudomonas putida W619 6112973 YP_001750857.1 CDS PputW619_4008 NC_010501.1 4429490 4429987 R PFAM: histidine triad (HIT) protein; KEGG: pen:PSEEN4102 hypothetical protein; histidine triad (HIT) protein complement(4429490..4429987) Pseudomonas putida W619 6112974 YP_001750858.1 CDS PputW619_4009 NC_010501.1 4430668 4431936 D PFAM: outer membrane porin; KEGG: pen:PSEEN4104 porin D; outer membrane porin 4430668..4431936 Pseudomonas putida W619 6112975 YP_001750859.1 CDS PputW619_4010 NC_010501.1 4432097 4433812 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4432097..4433812 Pseudomonas putida W619 6112976 YP_001750860.1 CDS PputW619_4011 NC_010501.1 4433833 4434786 D KEGG: pen:PSEEN4106 lipoprotein; lipoprotein 4433833..4434786 Pseudomonas putida W619 6112977 YP_001750861.1 CDS PputW619_4012 NC_010501.1 4434817 4435881 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(4434817..4435881) Pseudomonas putida W619 6112978 YP_001750862.1 CDS PputW619_4013 NC_010501.1 4436844 4439486 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: pen:PSEEN4110 hypothetical protein; hypothetical protein 4436844..4439486 Pseudomonas putida W619 6112982 YP_001750863.1 CDS PputW619_4014 NC_010501.1 4439486 4440778 D PFAM: virulence factor family protein; KEGG: pen:PSEEN4111 hypothetical protein; virulence factor family protein 4439486..4440778 Pseudomonas putida W619 6112983 YP_001750864.1 CDS PputW619_4015 NC_010501.1 4440816 4442714 R PFAM: K potassium transporter; KEGG: pen:PSEEN4112 Kup system potassium uptake protein; K potassium transporter complement(4440816..4442714) Pseudomonas putida W619 6112984 YP_001750865.1 CDS rimO NC_010501.1 4442951 4444282 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 4442951..4444282 Pseudomonas putida W619 6112985 YP_001750866.1 CDS PputW619_4017 NC_010501.1 4444368 4444823 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4114 acyltransferase, GNAT family; N-acetyltransferase GCN5 4444368..4444823 Pseudomonas putida W619 6112986 YP_001750867.1 CDS PputW619_4018 NC_010501.1 4444897 4445655 D PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN4116 hypothetical protein; RNA-binding S4 domain-containing protein 4444897..4445655 Pseudomonas putida W619 6112987 YP_001750868.1 CDS PputW619_4019 NC_010501.1 4445703 4446164 D PFAM: protein of unknown function DUF1456; KEGG: pen:PSEEN4117 hypothetical protein; hypothetical protein 4445703..4446164 Pseudomonas putida W619 6112988 YP_001750869.1 CDS PputW619_4020 NC_010501.1 4446171 4446866 D PFAM: protein of unknown function UPF0066; KEGG: pen:PSEEN4118 hypothetical protein; hypothetical protein 4446171..4446866 Pseudomonas putida W619 6112989 YP_001750870.1 CDS PputW619_4021 NC_010501.1 4447114 4447893 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN4119 ferredoxin--NADP+ reductase; oxidoreductase FAD/NAD(P)-binding subunit complement(4447114..4447893) Pseudomonas putida W619 6112990 YP_001750871.1 CDS PputW619_4022 NC_010501.1 4448011 4448937 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4120 transcriptional regulator, LysR family; LysR family transcriptional regulator 4448011..4448937 Pseudomonas putida W619 6112991 YP_001750872.1 CDS PputW619_4023 NC_010501.1 4448934 4449296 R PFAM: diacylglycerol kinase; KEGG: pen:PSEEN4121 diacylglycerol kinase; diacylglycerol kinase complement(4448934..4449296) Pseudomonas putida W619 6112992 YP_001750873.1 CDS PputW619_4024 NC_010501.1 4449370 4450020 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4122 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(4449370..4450020) Pseudomonas putida W619 6112993 YP_001750874.1 CDS PputW619_4025 NC_010501.1 4450199 4450909 R PFAM: DTW domain containing protein; KEGG: pen:PSEEN4123 hypothetical protein; DTW domain-containing protein complement(4450199..4450909) Pseudomonas putida W619 6112994 YP_001750875.1 CDS PputW619_4026 NC_010501.1 4451133 4451552 D KEGG: pen:PSEEN4124 hypothetical protein; hypothetical protein 4451133..4451552 Pseudomonas putida W619 6112995 YP_001750876.1 CDS PputW619_4027 NC_010501.1 4451553 4451756 R KEGG: pen:PSEEN4125 hypothetical protein; hypothetical protein complement(4451553..4451756) Pseudomonas putida W619 6112996 YP_001750877.1 CDS PputW619_4028 NC_010501.1 4452059 4453177 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN4126 hypothetical protein; hypothetical protein 4452059..4453177 Pseudomonas putida W619 6112997 YP_001750878.1 CDS recX NC_010501.1 4453203 4453673 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(4453203..4453673) Pseudomonas putida W619 6112998 YP_001750879.1 CDS recA NC_010501.1 4453691 4454758 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(4453691..4454758) Pseudomonas putida W619 6112999 YP_001750880.1 CDS PputW619_4031 NC_010501.1 4454862 4455344 R PFAM: CinA domain protein; KEGG: pen:PSEEN4129 hypothetical protein; CinA domain-containing protein complement(4454862..4455344) Pseudomonas putida W619 6113000 YP_001750881.1 CDS PputW619_4032 NC_010501.1 4455428 4455904 R KEGG: pen:PSEEN4130 phage protein; phage protein complement(4455428..4455904) Pseudomonas putida W619 6113001 YP_001750882.1 CDS PputW619_4033 NC_010501.1 4455901 4456449 R PFAM: glycoside hydrolase family 19; KEGG: pen:PSEEN4131 pyocin R2_PP, lytic enzyme; glycoside hydrolase family protein complement(4455901..4456449) Pseudomonas putida W619 6113002 YP_001750883.1 CDS PputW619_4034 NC_010501.1 4456477 4457511 R PFAM: late control D family protein; KEGG: pen:PSEEN4149 pyocin R2_PP, tail formation GpD; late control D family protein complement(4456477..4457511) Pseudomonas putida W619 6113003 YP_001750884.1 CDS PputW619_4035 NC_010501.1 4457516 4457722 R PFAM: tail X family protein; KEGG: pfl:PFL_2015 tail protein X-related protein; tail X family protein complement(4457516..4457722) Pseudomonas putida W619 6113004 YP_001750885.1 CDS PputW619_4036 NC_010501.1 4457697 4458542 R PFAM: P2 GpU family protein; KEGG: pen:PSEEN4151 pyocin R2_PP, tail formation protein gpU; P2 GpU family protein complement(4457697..4458542) Pseudomonas putida W619 6113005 YP_001750886.1 CDS PputW619_4037 NC_010501.1 4458552 4460405 R KEGG: pen:PSEEN4152 pyocin R2_PP, tail length determination protein; pyocin R2_PP, tail length determination protein complement(4458552..4460405) Pseudomonas putida W619 6113006 YP_001750887.1 CDS PputW619_4038 NC_010501.1 4460530 4460832 R KEGG: pen:PSEEN4153 hypothetical protein; hypothetical protein complement(4460530..4460832) Pseudomonas putida W619 6113007 YP_001750888.1 CDS PputW619_4039 NC_010501.1 4460843 4461352 R TIGRFAM: phage major tail tube protein; PFAM: major tail tube protein; KEGG: pen:PSEEN4154 pyocin R2_PP, tail tube protein GpFII; phage major tail tube protein complement(4460843..4461352) Pseudomonas putida W619 6113008 YP_001750889.1 CDS PputW619_4040 NC_010501.1 4461366 4462532 R PFAM: tail sheath protein; KEGG: pen:PSEEN4155 pyocin R2_PP, tail sheath protein gpFI; tail sheath protein complement(4461366..4462532) Pseudomonas putida W619 6113009 YP_001750890.1 CDS PputW619_4041 NC_010501.1 4462602 4463051 R KEGG: pae:PA0621 hypothetical protein; hypothetical protein complement(4462602..4463051) Pseudomonas putida W619 6113010 YP_001750891.1 CDS PputW619_4042 NC_010501.1 4463055 4465199 R KEGG: pst:PSPTO_3398 tail fiber protein H, putative; Phage-related tail fiber protein-like protein complement(4463055..4465199) Pseudomonas putida W619 6113011 YP_001750892.1 CDS PputW619_4043 NC_010501.1 4465192 4465800 R TIGRFAM: phage tail protein I; PFAM: Inorganic pyrophosphatase; KEGG: pen:PSEEN4160 pyocin R2_PP, tail formation protein GpI; phage tail protein I complement(4465192..4465800) Pseudomonas putida W619 6113012 YP_001750893.1 CDS PputW619_4044 NC_010501.1 4465802 4466683 R PFAM: Baseplate J family protein; KEGG: pen:PSEEN4161 pyocin R2_PP, baseplate/tail fiber protein; baseplate J family protein complement(4465802..4466683) Pseudomonas putida W619 6113013 YP_001750894.1 CDS PputW619_4045 NC_010501.1 4466680 4467006 R PFAM: GPW/gp25 family protein; KEGG: pen:PSEEN4162 pyocin R2_PP, baseplate protein; GPW/gp25 family protein complement(4466680..4467006) Pseudomonas putida W619 6113014 YP_001750895.1 CDS PputW619_4046 NC_010501.1 4467094 4467654 R TIGRFAM: phage baseplate assembly protein V; PFAM: baseplate assembly protein V; KEGG: pen:PSEEN4163 pyocin R2_PP, tail spike protein; phage baseplate assembly protein V complement(4467094..4467654) Pseudomonas putida W619 6113015 YP_001750896.1 CDS PputW619_4047 NC_010501.1 4467651 4468148 R KEGG: pen:PSEEN4164 phage protein; phage protein complement(4467651..4468148) Pseudomonas putida W619 6113016 YP_001750897.1 CDS PputW619_4048 NC_010501.1 4468162 4468497 R KEGG: pen:PSEEN4184 pyocin R2_PP, holin; pyocin R2_PP, holin complement(4468162..4468497) Pseudomonas putida W619 6113017 YP_001750898.1 CDS PputW619_4049 NC_010501.1 4468972 4469718 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: pen:PSEEN4186 transcriptional regulator; putative phage repressor complement(4468972..4469718) Pseudomonas putida W619 6113018 YP_001750899.1 CDS PputW619_4050 NC_010501.1 4469858 4472431 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 4469858..4472431 Pseudomonas putida W619 6113019 YP_001750900.1 CDS PputW619_4051 NC_010501.1 4472572 4472895 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN4188 ferredoxin; 4Fe-4S ferredoxin 4472572..4472895 Pseudomonas putida W619 6113020 YP_001750901.1 CDS PputW619_4052 NC_010501.1 4473399 4474406 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS complement(4473399..4474406) Pseudomonas putida W619 6113021 YP_001750902.1 CDS PputW619_4053 NC_010501.1 4474515 4475372 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: pen:PSEEN4190 peptidase M23B; peptidase M23B complement(4474515..4475372) Pseudomonas putida W619 6113022 YP_001750903.1 CDS pcm NC_010501.1 4475559 4476236 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(4475559..4476236) Pseudomonas putida W619 6113023 YP_001750904.1 CDS surE NC_010501.1 4476236 4476985 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(4476236..4476985) Pseudomonas putida W619 6113024 YP_001750905.1 CDS truD NC_010501.1 4476973 4478031 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(4476973..4478031) Pseudomonas putida W619 6113025 YP_001750906.1 CDS ispF NC_010501.1 4478028 4478501 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(4478028..4478501) Pseudomonas putida W619 6113026 YP_001750907.1 CDS PputW619_4058 NC_010501.1 4478646 4479500 R KEGG: pen:PSEEN4195 esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(4478646..4479500) Pseudomonas putida W619 6113027 YP_001750908.1 CDS PputW619_4059 NC_010501.1 4479509 4480621 R TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN4196 alcohol dehydrogenase class III; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(4479509..4480621) Pseudomonas putida W619 6113028 YP_001750909.1 CDS PputW619_4060 NC_010501.1 4480729 4481625 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN4197 transcriptional regulator, LysR family; LysR family transcriptional regulator 4480729..4481625 Pseudomonas putida W619 6113029 YP_001750910.1 CDS ispD NC_010501.1 4481763 4482470 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(4481763..4482470) Pseudomonas putida W619 6113030 YP_001750911.1 CDS PputW619_4062 NC_010501.1 4482467 4482748 R PFAM: Septum formation initiator; KEGG: pen:PSEEN4199 cell division protein FtsB-like; septum formation initiator complement(4482467..4482748) Pseudomonas putida W619 6113031 YP_001750912.1 CDS eno NC_010501.1 4482911 4484200 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(4482911..4484200) Pseudomonas putida W619 6113032 YP_001750913.1 CDS pyrG NC_010501.1 4484396 4486024 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(4484396..4486024) Pseudomonas putida W619 6113033 YP_001750914.1 CDS PputW619_4065 NC_010501.1 4486294 4487574 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: pen:PSEEN4203 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase complement(4486294..4487574) Pseudomonas putida W619 6113034 YP_001750915.1 CDS PputW619_4066 NC_010501.1 4487630 4488583 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(4487630..4488583) Pseudomonas putida W619 6113035 YP_001750916.1 CDS dnaE NC_010501.1 4488683 4492207 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(4488683..4492207) Pseudomonas putida W619 6113036 YP_001750917.1 CDS rnhB NC_010501.1 4492297 4492920 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(4492297..4492920) Pseudomonas putida W619 6113037 YP_001750918.1 CDS lpxB NC_010501.1 4492922 4494049 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(4492922..4494049) Pseudomonas putida W619 6113038 YP_001750919.1 CDS PputW619_4070 NC_010501.1 4494051 4494827 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(4494051..4494827) Pseudomonas putida W619 6113039 YP_001750920.1 CDS fabZ NC_010501.1 4494824 4495264 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(4494824..4495264) Pseudomonas putida W619 6113040 YP_001750921.1 CDS lpxD NC_010501.1 4495378 4496433 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(4495378..4496433) Pseudomonas putida W619 6113041 YP_001750922.1 CDS PputW619_4073 NC_010501.1 4496435 4496938 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: pen:PSEEN4211 outer membrane protein OmpH-like; outer membrane chaperone Skp complement(4496435..4496938) Pseudomonas putida W619 6113042 YP_001750923.1 CDS PputW619_4074 NC_010501.1 4496983 4499337 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pen:PSEEN4212 outer membrane protein, bacterial surface antigen family; outer membrane protein assembly complex, YaeT protein complement(4496983..4499337) Pseudomonas putida W619 6113043 YP_001750924.1 CDS PputW619_4075 NC_010501.1 4499408 4500760 R KEGG: pen:PSEEN4213 membrane-associated Zn-dependent proteases 1; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(4499408..4500760) Pseudomonas putida W619 6113044 YP_001750925.1 CDS PputW619_4076 NC_010501.1 4500822 4502012 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(4500822..4502012) Pseudomonas putida W619 6113045 YP_001750926.1 CDS PputW619_4077 NC_010501.1 4502009 4502824 R PFAM: phosphatidate cytidylyltransferase; KEGG: pen:PSEEN4215 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(4502009..4502824) Pseudomonas putida W619 6113046 YP_001750927.1 CDS PputW619_4078 NC_010501.1 4502824 4503579 R KEGG: pen:PSEEN4216 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(4502824..4503579) Pseudomonas putida W619 6113047 YP_001750928.1 CDS frr NC_010501.1 4503595 4504152 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(4503595..4504152) Pseudomonas putida W619 6113048 YP_001750929.1 CDS pyrH NC_010501.1 4504149 4504892 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(4504149..4504892) Pseudomonas putida W619 6113049 YP_001750930.1 CDS tsf NC_010501.1 4505069 4505932 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(4505069..4505932) Pseudomonas putida W619 6113050 YP_001750931.1 CDS rpsB NC_010501.1 4506118 4506855 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(4506118..4506855) Pseudomonas putida W619 6113051 YP_001750932.1 CDS PputW619_4083 NC_010501.1 4507160 4507942 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 4507160..4507942 Pseudomonas putida W619 6113052 YP_001750933.1 CDS glnD NC_010501.1 4507979 4510681 D Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 4507979..4510681 Pseudomonas putida W619 6113053 YP_001750934.1 CDS PputW619_4085 NC_010501.1 4510712 4511908 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 4510712..4511908 Pseudomonas putida W619 6113054 YP_001750935.1 CDS PputW619_4086 NC_010501.1 4511969 4513615 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4225 sodium:hydrogen antiporter (CPA1 family); Na+/H+ antiporter complement(4511969..4513615) Pseudomonas putida W619 6113055 YP_001750936.1 CDS PputW619_4087 NC_010501.1 4513840 4514139 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_0214 virulence-associated protein, putative; XRE family plasmid maintenance system antidote protein 4513840..4514139 Pseudomonas putida W619 6113056 YP_001750937.1 CDS PputW619_4088 NC_010501.1 4514246 4514611 D PFAM: arsenate reductase and related; KEGG: pen:PSEEN4226 hypothetical protein; arsenate reductase-like protein 4514246..4514611 Pseudomonas putida W619 6113057 YP_001750938.1 CDS PputW619_4089 NC_010501.1 4514654 4515688 D KEGG: pen:PSEEN4227 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 4514654..4515688 Pseudomonas putida W619 6113058 YP_001750939.1 CDS PputW619_4090 NC_010501.1 4515771 4516976 D PFAM: aminotransferase class V; KEGG: pen:PSEEN4228 cysteine sulfinate desulfinase; class V aminotransferase 4515771..4516976 Pseudomonas putida W619 6113059 YP_001750940.1 CDS PputW619_4091 NC_010501.1 4516973 4517383 D PFAM: Fe-S metabolism associated SufE; KEGG: pen:PSEEN4229 hypothetical protein; Fe-S metabolism associated SufE 4516973..4517383 Pseudomonas putida W619 6113060 YP_001750941.1 CDS PputW619_4092 NC_010501.1 4517405 4518214 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pen:PSEEN4230 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(4517405..4518214) Pseudomonas putida W619 6113061 YP_001750942.1 CDS PputW619_4093 NC_010501.1 4518347 4520938 D PFAM: glycoside hydrolase family 17; glycosyl transferase family 2; KEGG: pen:PSEEN4231 glycosyl transferase; glycosyl transferase family protein 4518347..4520938 Pseudomonas putida W619 6113062 YP_001750943.1 CDS PputW619_4094 NC_010501.1 4521044 4522195 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 4521044..4522195 Pseudomonas putida W619 6113063 YP_001750944.1 CDS PputW619_4095 NC_010501.1 4522195 4523007 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN4233 23S rRNA m1G745 methyltransferase RrmA; rRNA (guanine-N(1)-)-methyltransferase 4522195..4523007 Pseudomonas putida W619 6113064 YP_001750945.1 CDS PputW619_4096 NC_010501.1 4523025 4523402 D KEGG: pen:PSEEN4234 hypothetical protein; hypothetical protein 4523025..4523402 Pseudomonas putida W619 6113065 YP_001750946.1 CDS PputW619_4097 NC_010501.1 4523502 4523711 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pen:PSEEN4235 cold shock protein CspE-like; cold-shock DNA-binding domain-containing protein complement(4523502..4523711) Pseudomonas putida W619 6113066 YP_001750947.1 CDS PputW619_4098 NC_010501.1 4523943 4526429 D PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4523943..4526429 Pseudomonas putida W619 6113067 YP_001750948.1 CDS PputW619_4099 NC_010501.1 4526505 4526903 D KEGG: pen:PSEEN4238 lipoprotein; lipoprotein 4526505..4526903 Pseudomonas putida W619 6113068 YP_001750949.1 CDS PputW619_4100 NC_010501.1 4526937 4527626 D KEGG: pen:PSEEN4239 hypothetical protein; hypothetical protein 4526937..4527626 Pseudomonas putida W619 6113069 YP_001750950.1 CDS PputW619_4101 NC_010501.1 4527663 4530728 R PFAM: acriflavin resistance protein; KEGG: pen:PSEEN4240 Acr-type multidrug efflux transporter (RND family); acriflavin resistance protein complement(4527663..4530728) Pseudomonas putida W619 6113070 YP_001750951.1 CDS PputW619_4102 NC_010501.1 4530735 4531835 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4241 multidrug RND transporter, membrane fusion protein; RND family efflux transporter MFP subunit complement(4530735..4531835) Pseudomonas putida W619 6113071 YP_001750952.1 CDS PputW619_4103 NC_010501.1 4532017 4532646 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN4243 transcriptional regulator, TetR family; TetR family transcriptional regulator 4532017..4532646 Pseudomonas putida W619 6113072 YP_001750953.1 CDS PputW619_4104 NC_010501.1 4532702 4533478 R PFAM: protein of unknown function DUF548; KEGG: pen:PSEEN1271 hypothetical protein; hypothetical protein complement(4532702..4533478) Pseudomonas putida W619 6113073 YP_001750954.1 CDS PputW619_4105 NC_010501.1 4533583 4534203 D KEGG: pen:PSEEN1270 hypothetical protein; hypothetical protein 4533583..4534203 Pseudomonas putida W619 6113074 YP_001750955.1 CDS PputW619_4106 NC_010501.1 4534206 4534880 R PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein; extensin family protein complement(4534206..4534880) Pseudomonas putida W619 6113075 YP_001750956.1 CDS PputW619_4107 NC_010501.1 4534899 4535729 R KEGG: pen:PSEEN1269 carboxyvinyl-carboxyphosphonate phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase complement(4534899..4535729) Pseudomonas putida W619 6113076 YP_001750957.1 CDS PputW619_4108 NC_010501.1 4535759 4536628 R PFAM: protein of unknown function DUF72; KEGG: pen:PSEEN1268 hypothetical protein; hypothetical protein complement(4535759..4536628) Pseudomonas putida W619 6113077 YP_001750958.1 CDS PputW619_4109 NC_010501.1 4536632 4536919 R KEGG: pen:PSEEN1267 hypothetical protein; hypothetical protein complement(4536632..4536919) Pseudomonas putida W619 6113078 YP_001750959.1 CDS PputW619_4110 NC_010501.1 4537049 4537723 R PFAM: peptidase M22 glycoprotease; KEGG: pen:PSEEN1266 glycoprotein endopeptidase metalloprotease; peptidase M22 glycoprotease complement(4537049..4537723) Pseudomonas putida W619 6113079 YP_001750960.1 CDS adk NC_010501.1 4537811 4538461 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(4537811..4538461) Pseudomonas putida W619 6113080 YP_001750961.1 CDS PputW619_4112 NC_010501.1 4538719 4541346 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(4538719..4541346) Pseudomonas putida W619 6113081 YP_001750962.1 CDS PputW619_4113 NC_010501.1 4541517 4541861 D KEGG: pen:PSEEN1263 hypothetical protein; hypothetical protein 4541517..4541861 Pseudomonas putida W619 6113082 YP_001750963.1 CDS PputW619_4114 NC_010501.1 4542133 4542546 D KEGG: pen:PSEEN1262 hypothetical protein; hypothetical protein 4542133..4542546 Pseudomonas putida W619 6113083 YP_001750964.1 CDS PputW619_4115 NC_010501.1 4542597 4543385 D PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN1261 outer membrane protein; OmpA family; OmpA/MotB domain-containing protein 4542597..4543385 Pseudomonas putida W619 6113084 YP_001750965.1 CDS PputW619_4116 NC_010501.1 4543458 4543784 R KEGG: pen:PSEEN1260 hypothetical protein; hypothetical protein complement(4543458..4543784) Pseudomonas putida W619 6113085 YP_001750966.1 CDS PputW619_4117 NC_010501.1 4543781 4544704 R KEGG: pen:PSEEN1259 lipoprotein; lipoprotein complement(4543781..4544704) Pseudomonas putida W619 6113086 YP_001750967.1 CDS PputW619_4118 NC_010501.1 4544676 4545953 R PFAM: protein of unknown function DUF1704; KEGG: pen:PSEEN1258 hypothetical protein; hypothetical protein complement(4544676..4545953) Pseudomonas putida W619 6113087 YP_001750968.1 CDS PputW619_4119 NC_010501.1 4546008 4546556 R KEGG: pen:PSEEN1257 lipoprotein; lipoprotein complement(4546008..4546556) Pseudomonas putida W619 6113088 YP_001750969.1 CDS PputW619_4120 NC_010501.1 4546586 4547290 R PFAM: regulatory protein TetR; KEGG: pen:PSEEN1256 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(4546586..4547290) Pseudomonas putida W619 6113089 YP_001750970.1 CDS lysS NC_010501.1 4547434 4548936 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(4547434..4548936) Pseudomonas putida W619 6113090 YP_001750971.1 CDS PputW619_4122 NC_010501.1 4549026 4549940 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: pen:PSEEN1254 peptide chain release factor 2; peptide chain release factor 2 complement(4549026..4549940) Pseudomonas putida W619 6113091 YP_001750972.1 CDS PputW619_4123 NC_010501.1 4550332 4550727 D hypothetical protein 4550332..4550727 Pseudomonas putida W619 6113092 YP_001750973.1 CDS PputW619_4124 NC_010501.1 4550768 4551772 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN1251 response regulator/GGDEF domain protein; response regulator receiver modulated diguanylate cyclase complement(4550768..4551772) Pseudomonas putida W619 6113093 YP_001750974.1 CDS PputW619_4125 NC_010501.1 4551824 4552837 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(4551824..4552837) Pseudomonas putida W619 6113094 YP_001750975.1 CDS PputW619_4126 NC_010501.1 4552834 4555101 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: pen:PSEEN1249 sensor histidine kinase/response regulator hybrid; CheA signal transduction histidine kinase complement(4552834..4555101) Pseudomonas putida W619 6113095 YP_001750976.1 CDS PputW619_4127 NC_010501.1 4555098 4555763 R PFAM: CheW domain protein; KEGG: pen:PSEEN1248 chemotaxis signal transduction protein; CheW domain protein; CheW protein complement(4555098..4555763) Pseudomonas putida W619 6113096 YP_001750977.1 CDS PputW619_4128 NC_010501.1 4555760 4557004 R PFAM: MCP methyltransferase CheR-type; KEGG: pen:PSEEN1247 methyltransferase, CheR-like; CheR-type MCP methyltransferase complement(4555760..4557004) Pseudomonas putida W619 6113097 YP_001750978.1 CDS PputW619_4129 NC_010501.1 4557001 4557507 R PFAM: CheW domain protein; KEGG: pen:PSEEN1246 chemotaxis signal transduction protein; CheW domain protein; CheW protein complement(4557001..4557507) Pseudomonas putida W619 6113098 YP_001750979.1 CDS PputW619_4130 NC_010501.1 4557513 4559135 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN1245 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(4557513..4559135) Pseudomonas putida W619 6113099 YP_001750980.1 CDS PputW619_4131 NC_010501.1 4559265 4559951 R PFAM: protein of unknown function DUF533; KEGG: pen:PSEEN1243 hypothetical protein; hypothetical protein complement(4559265..4559951) Pseudomonas putida W619 6113100 YP_001750981.1 CDS PputW619_4132 NC_010501.1 4560156 4561307 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1242 ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein 4560156..4561307 Pseudomonas putida W619 6113101 YP_001750982.1 CDS PputW619_4133 NC_010501.1 4561423 4562463 D KEGG: pen:PSEEN1241 ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4561423..4562463 Pseudomonas putida W619 6113102 YP_001750983.1 CDS PputW619_4134 NC_010501.1 4562465 4563388 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1240 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4562465..4563388 Pseudomonas putida W619 6113103 YP_001750984.1 CDS PputW619_4135 NC_010501.1 4563378 4564184 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1239 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4563378..4564184 Pseudomonas putida W619 6113104 YP_001750985.1 CDS PputW619_4136 NC_010501.1 4564202 4565626 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 4564202..4565626 Pseudomonas putida W619 6113105 YP_001750986.1 CDS PputW619_4137 NC_010501.1 4565843 4566049 D KEGG: pen:PSEEN1237 hypothetical protein; hypothetical protein 4565843..4566049 Pseudomonas putida W619 6113106 YP_001750987.1 CDS PputW619_4138 NC_010501.1 4566046 4566378 D PFAM: HicB family protein; KEGG: pen:PSEEN1236 hypothetical protein; HicB family protein 4566046..4566378 Pseudomonas putida W619 6113107 YP_001750988.1 CDS PputW619_4139 NC_010501.1 4566388 4567494 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN1235 oxidireductase; NADH:flavin oxidoreductase complement(4566388..4567494) Pseudomonas putida W619 6113108 YP_001750989.1 CDS PputW619_4140 NC_010501.1 4567947 4568228 D hypothetical protein 4567947..4568228 Pseudomonas putida W619 6113109 YP_001750990.1 CDS PputW619_4141 NC_010501.1 4568372 4568509 D hypothetical protein 4568372..4568509 Pseudomonas putida W619 6113110 YP_001750991.1 CDS PputW619_4142 NC_010501.1 4568515 4570224 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pen:PSEEN4244 ssDNA specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(4568515..4570224) Pseudomonas putida W619 6113111 YP_001750992.1 CDS PputW619_4143 NC_010501.1 4570237 4570779 R PFAM: YaeQ family protein; KEGG: psb:Psyr_1297 YaeQ; YaeQ family protein complement(4570237..4570779) Pseudomonas putida W619 6113112 YP_001750993.1 CDS PputW619_4144 NC_010501.1 4570912 4572111 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN4246 CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 4570912..4572111 Pseudomonas putida W619 6113113 YP_001750994.1 CDS PputW619_4145 NC_010501.1 4572126 4572986 D KEGG: pen:PSEEN4247 hypothetical protein; hypothetical protein 4572126..4572986 Pseudomonas putida W619 6113114 YP_001750995.1 CDS PputW619_4146 NC_010501.1 4573115 4573396 R KEGG: pen:PSEEN4248 hypothetical protein; hypothetical protein complement(4573115..4573396) Pseudomonas putida W619 6113115 YP_001750996.1 CDS PputW619_4147 NC_010501.1 4573476 4573874 R KEGG: pen:PSEEN4249 hypothetical protein; hypothetical protein complement(4573476..4573874) Pseudomonas putida W619 6113116 YP_001750997.1 CDS PputW619_4148 NC_010501.1 4574001 4575410 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(4574001..4575410) Pseudomonas putida W619 6113117 YP_001750998.1 CDS PputW619_4149 NC_010501.1 4575576 4576880 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(4575576..4576880) Pseudomonas putida W619 6113118 YP_001750999.1 CDS PputW619_4150 NC_010501.1 4576963 4577724 R KEGG: pen:PSEEN4253 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC complement(4576963..4577724) Pseudomonas putida W619 6113119 YP_001751000.1 CDS xerD NC_010501.1 4577877 4578773 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(4577877..4578773) Pseudomonas putida W619 6113120 YP_001751001.1 CDS PputW619_4152 NC_010501.1 4578842 4580668 D PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 4578842..4580668 Pseudomonas putida W619 6113121 YP_001751002.1 CDS PputW619_4153 NC_010501.1 4580673 4581080 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN4256 long-chain acyl-CoA thioester hydrolase; thioesterase superfamily protein complement(4580673..4581080) Pseudomonas putida W619 6113122 YP_001751003.1 CDS rplS NC_010501.1 4581175 4581525 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(4581175..4581525) Pseudomonas putida W619 6113123 YP_001751004.1 CDS trmD NC_010501.1 4581568 4582320 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(4581568..4582320) Pseudomonas putida W619 6113124 YP_001751005.1 CDS rimM NC_010501.1 4582324 4582860 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(4582324..4582860) Pseudomonas putida W619 6113125 YP_001751006.1 CDS rpsP NC_010501.1 4582866 4583117 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(4582866..4583117) Pseudomonas putida W619 6113126 YP_001751007.1 CDS PputW619_4158 NC_010501.1 4583353 4584729 R KEGG: pen:PSEEN4261 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(4583353..4584729) Pseudomonas putida W619 6113127 YP_001751008.1 CDS PputW619_4159 NC_010501.1 4585025 4585834 D PFAM: cytochrome c assembly protein; KEGG: pen:PSEEN4262 cytochrome c assembly protein; cytochrome c assembly protein 4585025..4585834 Pseudomonas putida W619 6113128 YP_001751009.1 CDS PputW619_4160 NC_010501.1 4585844 4587049 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pen:PSEEN4263 hypothetical protein; transporter-associated protein 4585844..4587049 Pseudomonas putida W619 6113129 YP_001751010.1 CDS PputW619_4161 NC_010501.1 4587329 4588630 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pen:PSEEN4264 citrate-proton symporter (MFS superfamily); major facilitator superfamily metabolite/H(+) symporter 4587329..4588630 Pseudomonas putida W619 6113130 YP_001751011.1 CDS purT NC_010501.1 4588708 4589889 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(4588708..4589889) Pseudomonas putida W619 6113131 YP_001751012.1 CDS PputW619_4163 NC_010501.1 4589966 4590433 R PFAM: protein of unknown function DUF165; KEGG: pen:PSEEN4266 hypothetical protein; hypothetical protein complement(4589966..4590433) Pseudomonas putida W619 6113132 YP_001751013.1 CDS PputW619_4164 NC_010501.1 4590493 4590693 R PFAM: protein of unknown function DUF1289; KEGG: pen:PSEEN4267 hypothetical protein; hypothetical protein complement(4590493..4590693) Pseudomonas putida W619 6113133 YP_001751014.1 CDS PputW619_4165 NC_010501.1 4590686 4591210 R KEGG: pen:PSEEN4268 transferase family protein; transferase complement(4590686..4591210) Pseudomonas putida W619 6113134 YP_001751015.1 CDS PputW619_4166 NC_010501.1 4591252 4591851 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4269 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase complement(4591252..4591851) Pseudomonas putida W619 6113135 YP_001751016.1 CDS PputW619_4167 NC_010501.1 4591978 4592529 D PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4270 hydrolase, MutT/NUDIX family protein; NUDIX hydrolase 4591978..4592529 Pseudomonas putida W619 6113136 YP_001751017.1 CDS PputW619_4168 NC_010501.1 4592548 4593102 D KEGG: pen:PSEEN4271 hypothetical protein; hypothetical protein 4592548..4593102 Pseudomonas putida W619 6113137 YP_001751018.1 CDS PputW619_4169 NC_010501.1 4593263 4594942 D PFAM: Hemolysin activator HlyB domain protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: pfl:PFL_4236 activation/secretion protein, TPS family, putative; polypeptide-transport-associated domain-containing protein 4593263..4594942 Pseudomonas putida W619 6113138 YP_001751019.1 CDS PputW619_4170 NC_010501.1 4594970 4599496 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: pap:PSPA7_4642 hemolysin; filamentous hemagglutinin outer membrane protein 4594970..4599496 Pseudomonas putida W619 6113139 YP_001751020.1 CDS PputW619_4171 NC_010501.1 4599558 4600217 R KEGG: pen:PSEEN4272 type II secretion system protein N; type II secretion system protein N complement(4599558..4600217) Pseudomonas putida W619 6113140 YP_001751021.1 CDS PputW619_4172 NC_010501.1 4600214 4600600 R KEGG: pen:PSEEN4273 type II secretion system protein M; type II secretion system protein M complement(4600214..4600600) Pseudomonas putida W619 6113141 YP_001751022.1 CDS PputW619_4173 NC_010501.1 4600597 4601685 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: pen:PSEEN4274 type II secretion pathway protein L; general secretion pathway protein L complement(4600597..4601685) Pseudomonas putida W619 6113142 YP_001751023.1 CDS PputW619_4174 NC_010501.1 4601682 4602272 R KEGG: pen:PSEEN4275 type II secretion system protein J; type II secretion system protein J complement(4601682..4602272) Pseudomonas putida W619 6113143 YP_001751024.1 CDS PputW619_4175 NC_010501.1 4602269 4602637 R PFAM: type II secretion system protein I/J; KEGG: pen:PSEEN4276 type II secretion system protein I; type II secretion system protein I/J complement(4602269..4602637) Pseudomonas putida W619 6113144 YP_001751025.1 CDS PputW619_4176 NC_010501.1 4602634 4603071 R TIGRFAM: general secretion pathway protein H; KEGG: pen:PSEEN4277 type II secretion system protein H; general secretion pathway protein H complement(4602634..4603071) Pseudomonas putida W619 6113145 YP_001751026.1 CDS PputW619_4177 NC_010501.1 4603075 4603509 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pen:PSEEN4278 type II secretion system protein G; general secretion pathway protein G complement(4603075..4603509) Pseudomonas putida W619 6113146 YP_001751027.1 CDS PputW619_4178 NC_010501.1 4603528 4604730 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pen:PSEEN4279 type II secretion system protein F; general secretion pathway protein F complement(4603528..4604730) Pseudomonas putida W619 6113147 YP_001751028.1 CDS PputW619_4179 NC_010501.1 4604734 4606182 R PFAM: type II secretion system protein E; KEGG: pen:PSEEN4280 type II secretion system protein E; type II secretion system protein E complement(4604734..4606182) Pseudomonas putida W619 6113148 YP_001751029.1 CDS PputW619_4180 NC_010501.1 4606182 4608134 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pen:PSEEN4281 type II secretion system protein D; general secretion pathway protein D complement(4606182..4608134) Pseudomonas putida W619 6113149 YP_001751030.1 CDS PputW619_4181 NC_010501.1 4608138 4608563 R KEGG: pen:PSEEN4282 type II secretion protein C; type II secretion protein C complement(4608138..4608563) Pseudomonas putida W619 6113150 YP_001751031.1 CDS PputW619_4182 NC_010501.1 4608560 4610200 R KEGG: pen:PSEEN4283 lipoprotein UxpA; lipoprotein UxpA complement(4608560..4610200) Pseudomonas putida W619 6113151 YP_001751032.1 CDS PputW619_4183 NC_010501.1 4610425 4612488 D PFAM: protein of unknown function DUF839; KEGG: pen:PSEEN4284 hypothetical protein; hypothetical protein 4610425..4612488 Pseudomonas putida W619 6113152 YP_001751033.1 CDS PputW619_4184 NC_010501.1 4612599 4613564 R PFAM: General secretion pathway protein K; KEGG: pen:PSEEN4375 type II secretion system protein K (XcpX); general secretion pathway protein K complement(4612599..4613564) Pseudomonas putida W619 6113153 YP_001751034.1 CDS PputW619_4185 NC_010501.1 4613710 4613943 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pen:PSEEN4376 twin-arginine translocation protein TatA; twin arginine-targeting protein translocase 4613710..4613943 Pseudomonas putida W619 6113154 YP_001751035.1 CDS PputW619_4186 NC_010501.1 4613943 4614233 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: psa:PST_0334 translocation protein TatB; twin-arginine translocation protein subunit TatB 4613943..4614233 Pseudomonas putida W619 6113155 YP_001751036.1 CDS PputW619_4187 NC_010501.1 4614230 4614988 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pmy:Pmen_0516 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 4614230..4614988 Pseudomonas putida W619 6113156 YP_001751037.1 CDS PputW619_4188 NC_010501.1 4615032 4615343 R KEGG: pen:PSEEN4385 hypothetical protein; hypothetical protein complement(4615032..4615343) Pseudomonas putida W619 6113157 YP_001751038.1 CDS PputW619_4189 NC_010501.1 4615347 4619246 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(4615347..4619246) Pseudomonas putida W619 6113158 YP_001751039.1 CDS PputW619_4190 NC_010501.1 4619470 4620927 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 4619470..4620927 Pseudomonas putida W619 6113159 YP_001751040.1 CDS PputW619_4191 NC_010501.1 4621032 4621511 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pen:PSEEN4389 cytidine/deoxycytidylate deaminase; CMP/dCMP deaminase complement(4621032..4621511) Pseudomonas putida W619 6113160 YP_001751041.1 CDS PputW619_4192 NC_010501.1 4621511 4622896 R PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pen:PSEEN4390 Mn2+ multicopper oxidase CumA; multicopper oxidase type 3 complement(4621511..4622896) Pseudomonas putida W619 6113161 YP_001751042.1 CDS guaA NC_010501.1 4623066 4624643 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(4623066..4624643) Pseudomonas putida W619 6113162 YP_001751043.1 CDS PputW619_4194 NC_010501.1 4624770 4626239 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(4624770..4626239) Pseudomonas putida W619 6113163 YP_001751044.1 CDS PputW619_4195 NC_010501.1 4626326 4626883 R KEGG: pen:PSEEN4394 hypothetical protein; hypothetical protein complement(4626326..4626883) Pseudomonas putida W619 6113164 YP_001751045.1 CDS PputW619_4196 NC_010501.1 4626930 4627685 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN4395 hypothetical protein; hypothetical protein complement(4626930..4627685) Pseudomonas putida W619 6113165 YP_001751046.1 CDS xseA NC_010501.1 4627790 4629181 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 4627790..4629181 Pseudomonas putida W619 6113166 YP_001751047.1 CDS PputW619_4198 NC_010501.1 4629185 4630012 D PFAM: peptidase M23B; KEGG: pen:PSEEN4398 peptidase, M23/M37 family; peptidase M23B 4629185..4630012 Pseudomonas putida W619 6113167 YP_001751048.1 CDS PputW619_4199 NC_010501.1 4630414 4632087 D KEGG: pen:PSEEN4399 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 4630414..4632087 Pseudomonas putida W619 6113168 YP_001751049.1 CDS PputW619_4200 NC_010501.1 4632315 4632989 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(4632315..4632989) Pseudomonas putida W619 6113169 YP_001751050.1 CDS PputW619_4201 NC_010501.1 4633007 4633720 R TIGRFAM: 6-phosphogluconolactonase; KEGG: pen:PSEEN4404 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(4633007..4633720) Pseudomonas putida W619 6113170 YP_001751051.1 CDS PputW619_4202 NC_010501.1 4633707 4635176 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(4633707..4635176) Pseudomonas putida W619 6113171 YP_001751052.1 CDS PputW619_4203 NC_010501.1 4635379 4636251 D Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 4635379..4636251 Pseudomonas putida W619 6113172 YP_001751053.1 CDS PputW619_4204 NC_010501.1 4636244 4637098 R PFAM: Aldose 1-epimerase; KEGG: pen:PSEEN4407 hypothetical protein; aldose 1-epimerase complement(4636244..4637098) Pseudomonas putida W619 6113173 YP_001751054.1 CDS PputW619_4205 NC_010501.1 4637216 4638559 R PFAM: Carbohydrate-selective porin OprB; KEGG: pen:PSEEN4408 glucose-selective porin OprB; carbohydrate-selective porin OprB complement(4637216..4638559) Pseudomonas putida W619 6113174 YP_001751055.1 CDS PputW619_4206 NC_010501.1 4638600 4639754 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pen:PSEEN4409 glucose ABC transporter, ATP-binding subunit; ABC transporter-like protein complement(4638600..4639754) Pseudomonas putida W619 6113175 YP_001751056.1 CDS PputW619_4207 NC_010501.1 4639758 4640603 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_4368 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(4639758..4640603) Pseudomonas putida W619 6113176 YP_001751057.1 CDS PputW619_4208 NC_010501.1 4640596 4641504 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4411 glucose ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(4640596..4641504) Pseudomonas putida W619 6113177 YP_001751058.1 CDS PputW619_4209 NC_010501.1 4641698 4642984 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4412 glucose ABC transporter, periplasmic sugar-binding protein; extracellular solute-binding protein complement(4641698..4642984) Pseudomonas putida W619 6113178 YP_001751059.1 CDS PputW619_4210 NC_010501.1 4643089 4644315 R PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4413 N-acyl-D-glucosamine 2-epimerase; N-acylglucosamine 2-epimerase complement(4643089..4644315) Pseudomonas putida W619 6113179 YP_001751060.1 CDS PputW619_4211 NC_010501.1 4644418 4645872 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN4414 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4644418..4645872) Pseudomonas putida W619 6113180 YP_001751061.1 CDS PputW619_4212 NC_010501.1 4645853 4646578 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN4415 two-component response regulator GltR; two component transcriptional regulator complement(4645853..4646578) Pseudomonas putida W619 6113181 YP_001751062.1 CDS glk NC_010501.1 4646644 4647603 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(4646644..4647603) Pseudomonas putida W619 6113182 YP_001751063.1 CDS PputW619_4214 NC_010501.1 4647600 4649426 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(4647600..4649426) Pseudomonas putida W619 6113183 YP_001751064.1 CDS PputW619_4215 NC_010501.1 4649692 4650693 D KEGG: pen:PSEEN4418 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; type I glyceraldehyde-3-phosphate dehydrogenase 4649692..4650693 Pseudomonas putida W619 6113184 YP_001751065.1 CDS PputW619_4216 NC_010501.1 4650914 4651426 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN4420 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4650914..4651426 Pseudomonas putida W619 6113185 YP_001751066.1 CDS PputW619_4217 NC_010501.1 4651517 4652479 D PFAM: FecR protein; KEGG: pen:PSEEN4421 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4651517..4652479 Pseudomonas putida W619 6113186 YP_001751067.1 CDS PputW619_4218 NC_010501.1 4652606 4655194 D TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN4422 TonB-dependent outer membrane heme receptor; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 4652606..4655194 Pseudomonas putida W619 6113187 YP_001751068.1 CDS PputW619_4219 NC_010501.1 4655336 4655929 D PFAM: Haem oxygenase; KEGG: pen:PSEEN4423 heme oxygenase; heme oxygenase 4655336..4655929 Pseudomonas putida W619 6113188 YP_001751069.1 CDS PputW619_4220 NC_010501.1 4655984 4656391 D PFAM: protein of unknown function DUF454; KEGG: pen:PSEEN4424 hypothetical protein; hypothetical protein 4655984..4656391 Pseudomonas putida W619 6113189 YP_001751070.1 CDS PputW619_4221 NC_010501.1 4656377 4657804 R TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: pen:PSEEN4426 arginine/ornithine antiporter; arginine/ornithine antiporter complement(4656377..4657804) Pseudomonas putida W619 6113190 YP_001751071.1 CDS PputW619_4222 NC_010501.1 4658242 4659669 D TIGRFAM: arginine/ornithine antiporter; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN4427 arginine/ornithine antiporter; arginine/ornithine antiporter 4658242..4659669 Pseudomonas putida W619 6113191 YP_001751072.1 CDS PputW619_4223 NC_010501.1 4659702 4660955 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 4659702..4660955 Pseudomonas putida W619 6113192 YP_001751073.1 CDS PputW619_4224 NC_010501.1 4661024 4662034 D catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4661024..4662034 Pseudomonas putida W619 6113193 YP_001751074.1 CDS PputW619_4225 NC_010501.1 4662177 4663106 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4662177..4663106 Pseudomonas putida W619 6113194 YP_001751075.1 CDS PputW619_4226 NC_010501.1 4663163 4663531 D KEGG: pen:PSEEN4431 hypothetical protein; hypothetical protein 4663163..4663531 Pseudomonas putida W619 6113195 YP_001751076.1 CDS PputW619_4227 NC_010501.1 4663595 4665190 D PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: pen:PSEEN4432 sigma-54 dependent transcriptional regulator; sigma-54 factor interaction domain-containing protein 4663595..4665190 Pseudomonas putida W619 6113196 YP_001751077.1 CDS PputW619_4228 NC_010501.1 4665410 4666615 D PFAM: sodium/glutamate symporter; KEGG: cvi:CV_1105 sodium/glutamate symport carrier protein; sodium/glutamate symporter 4665410..4666615 Pseudomonas putida W619 6113197 YP_001751078.1 CDS PputW619_4229 NC_010501.1 4666893 4667276 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 4666893..4667276 Pseudomonas putida W619 6113198 YP_001751079.1 CDS PputW619_4230 NC_010501.1 4667288 4670143 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 4667288..4670143 Pseudomonas putida W619 6113199 YP_001751080.1 CDS PputW619_4231 NC_010501.1 4670303 4671679 D KEGG: pen:PSEEN4437 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 4670303..4671679 Pseudomonas putida W619 6113200 YP_001751081.1 CDS PputW619_4232 NC_010501.1 4671707 4672828 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: pen:PSEEN4438 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent; glycine cleavage system T protein 4671707..4672828 Pseudomonas putida W619 6113201 YP_001751082.1 CDS PputW619_4233 NC_010501.1 4673184 4673396 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: psa:PST_3054 cold acclimation protein B; cold-shock DNA-binding domain-containing protein 4673184..4673396 Pseudomonas putida W619 6113202 YP_001751083.1 CDS PputW619_4234 NC_010501.1 4673488 4673976 D PFAM: RDD domain containing protein; KEGG: pen:PSEEN4440 hypothetical protein; RDD domain-containing protein 4673488..4673976 Pseudomonas putida W619 6113203 YP_001751084.1 CDS PputW619_4235 NC_010501.1 4674074 4675135 R PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4441 hypothetical protein; YjgP/YjgQ family permease complement(4674074..4675135) Pseudomonas putida W619 6113204 YP_001751085.1 CDS PputW619_4236 NC_010501.1 4675128 4676243 R PFAM: permease YjgP/YjgQ family protein; KEGG: pen:PSEEN4442 hypothetical protein; YjgP/YjgQ family permease complement(4675128..4676243) Pseudomonas putida W619 6113205 YP_001751086.1 CDS PputW619_4237 NC_010501.1 4676533 4678026 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4676533..4678026 Pseudomonas putida W619 6113206 YP_001751087.1 CDS PputW619_4238 NC_010501.1 4678078 4678506 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4678078..4678506 Pseudomonas putida W619 6113207 YP_001751088.1 CDS PputW619_4239 NC_010501.1 4678512 4678889 D KEGG: pen:PSEEN4445 hypothetical protein; hypothetical protein 4678512..4678889 Pseudomonas putida W619 6113208 YP_001751089.1 CDS valS NC_010501.1 4679028 4681874 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4679028..4681874 Pseudomonas putida W619 6113209 YP_001751090.1 CDS PputW619_4241 NC_010501.1 4682046 4682996 D PFAM: protein of unknown function DUF890; KEGG: pen:PSEEN4447 hypothetical protein; putative SAM-dependent methyltransferase 4682046..4682996 Pseudomonas putida W619 6113210 YP_001751091.1 CDS PputW619_4242 NC_010501.1 4683048 4683329 R PFAM: histone family protein DNA-binding protein; KEGG: pen:PSEEN4448 DNA-binding protein HU form N; histone family protein DNA-binding protein complement(4683048..4683329) Pseudomonas putida W619 6113211 YP_001751092.1 CDS PputW619_4243 NC_010501.1 4683723 4684730 D PFAM: 37kDa nucleoid-associated protein; KEGG: pen:PSEEN4449 nucleoid-associated protein; nucleoid-associated protein NdpA 4683723..4684730 Pseudomonas putida W619 6113212 YP_001751093.1 CDS PputW619_4244 NC_010501.1 4684731 4685015 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: pen:PSEEN4450 endonuclease; GIY-YIG nuclease superfamily protein complement(4684731..4685015) Pseudomonas putida W619 6113213 YP_001751094.1 CDS PputW619_4245 NC_010501.1 4685055 4685525 R KEGG: pen:PSEEN4451 hypothetical protein; hypothetical protein complement(4685055..4685525) Pseudomonas putida W619 6113214 YP_001751095.1 CDS PputW619_4246 NC_010501.1 4685628 4686908 R TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN4452 cyanate MFS transporter; cyanate transporter complement(4685628..4686908) Pseudomonas putida W619 6113215 YP_001751096.1 CDS PputW619_4247 NC_010501.1 4686922 4687572 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN4453 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4686922..4687572) Pseudomonas putida W619 6113216 YP_001751097.1 CDS PputW619_4248 NC_010501.1 4687685 4688731 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(4687685..4688731) Pseudomonas putida W619 6113217 YP_001751098.1 CDS hisD NC_010501.1 4688734 4690059 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(4688734..4690059) Pseudomonas putida W619 6113218 YP_001751099.1 CDS hisG NC_010501.1 4690186 4690821 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(4690186..4690821) Pseudomonas putida W619 6113219 YP_001751100.1 CDS PputW619_4251 NC_010501.1 4690912 4692177 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(4690912..4692177) Pseudomonas putida W619 6113220 YP_001751101.1 CDS PputW619_4252 NC_010501.1 4692201 4692440 R PFAM: BolA family protein; KEGG: pen:PSEEN1104 toluene-tolerance protein Ttg2F; BolA family protein complement(4692201..4692440) Pseudomonas putida W619 6113221 YP_001751102.1 CDS PputW619_4253 NC_010501.1 4692559 4692861 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pen:PSEEN1103 toluene-tolerance protein TtgE; anti-sigma-factor antagonist complement(4692559..4692861) Pseudomonas putida W619 6113222 YP_001751103.1 CDS PputW619_4254 NC_010501.1 4692858 4693511 R PFAM: toluene tolerance family protein; KEGG: pen:PSEEN1102 toluene tolerance protein Ttg2D; toluene tolerance family protein complement(4692858..4693511) Pseudomonas putida W619 6113223 YP_001751104.1 CDS PputW619_4255 NC_010501.1 4693521 4694006 R PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN1101 toluene tolerance ABC transporter, periplasmic substrate-binding protein; hypothetical protein complement(4693521..4694006) Pseudomonas putida W619 6113224 YP_001751105.1 CDS PputW619_4256 NC_010501.1 4694006 4694803 R PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN1100 toluene tolerance ABC efflux transporter, permease; hypothetical protein complement(4694006..4694803) Pseudomonas putida W619 6113225 YP_001751106.1 CDS PputW619_4257 NC_010501.1 4694803 4695612 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1099 toluene tolerance ABC efflux transporter, ATP-binding protein; ABC transporter-like protein complement(4694803..4695612) Pseudomonas putida W619 6113226 YP_001751107.1 CDS PputW619_4258 NC_010501.1 4695860 4696834 D KEGG: pen:PSEEN1098 hypothetical protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4695860..4696834 Pseudomonas putida W619 6113227 YP_001751108.1 CDS PputW619_4259 NC_010501.1 4696835 4697374 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pen:PSEEN1097 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4696835..4697374 Pseudomonas putida W619 6113228 YP_001751109.1 CDS PputW619_4260 NC_010501.1 4697382 4697954 D PFAM: protein of unknown function DUF1239; KEGG: pen:PSEEN1096 hypothetical protein; hypothetical protein 4697382..4697954 Pseudomonas putida W619 6113229 YP_001751110.1 CDS PputW619_4261 NC_010501.1 4697941 4698465 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: pen:PSEEN1095 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA 4697941..4698465 Pseudomonas putida W619 6113230 YP_001751111.1 CDS PputW619_4262 NC_010501.1 4698466 4699191 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN1094 ABC transporter, ATP-binding protein; ABC transporter-like protein 4698466..4699191 Pseudomonas putida W619 6113231 YP_001751112.1 CDS PputW619_4263 NC_010501.1 4699366 4700859 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 4699366..4700859 Pseudomonas putida W619 6113232 YP_001751113.1 CDS PputW619_4264 NC_010501.1 4700939 4701247 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pen:PSEEN1092 sigma N (sigma 54) modulator RpoX; sigma 54 modulation protein/30S ribosomal protein S30EA 4700939..4701247 Pseudomonas putida W619 6113233 YP_001751114.1 CDS PputW619_4265 NC_010501.1 4701259 4701723 D TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pen:PSEEN1091 phosphotransferase system, nitrogen regulatory IIA protein; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 4701259..4701723 Pseudomonas putida W619 6113234 YP_001751115.1 CDS PputW619_4266 NC_010501.1 4701726 4702580 D PFAM: conserved hypothetical protein; KEGG: pen:PSEEN1090 uncharacterized ATPase; hypothetical protein 4701726..4702580 Pseudomonas putida W619 6113235 YP_001751116.1 CDS PputW619_4267 NC_010501.1 4702601 4702873 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pen:PSEEN1089 phosphocarrier protein (HPr-like) NPr; phosphotransferase system, phosphocarrier protein HPr 4702601..4702873 Pseudomonas putida W619 6113236 YP_001751117.1 CDS PputW619_4268 NC_010501.1 4702937 4703830 R PFAM: zinc/iron permease; KEGG: pen:PSEEN1088 hypothetical protein; zinc/iron permease complement(4702937..4703830) Pseudomonas putida W619 6113237 YP_001751118.1 CDS PputW619_4269 NC_010501.1 4703842 4704453 R PFAM: manganese and iron superoxide dismutase; KEGG: pen:PSEEN1087 superoxide dismutase; superoxide dismutase complement(4703842..4704453) Pseudomonas putida W619 6113238 YP_001751119.1 CDS PputW619_4270 NC_010501.1 4704455 4704916 R KEGG: pen:PSEEN1086 hypothetical protein; hypothetical protein complement(4704455..4704916) Pseudomonas putida W619 6113239 YP_001751120.1 CDS fumC NC_010501.1 4704944 4706320 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(4704944..4706320) Pseudomonas putida W619 6113240 YP_001751121.1 CDS PputW619_4272 NC_010501.1 4706313 4706705 R KEGG: pen:PSEEN1084 hypothetical protein; hypothetical protein complement(4706313..4706705) Pseudomonas putida W619 6113241 YP_001751122.1 CDS PputW619_4273 NC_010501.1 4706842 4708188 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1083 peptidase U62 TldE; peptidase U62 modulator of DNA gyrase complement(4706842..4708188) Pseudomonas putida W619 6113242 YP_001751123.1 CDS PputW619_4274 NC_010501.1 4708344 4708865 D PFAM: protein of unknown function DUF615; KEGG: pen:PSEEN1082 hypothetical protein; hypothetical protein 4708344..4708865 Pseudomonas putida W619 6113243 YP_001751124.1 CDS PputW619_4275 NC_010501.1 4708907 4710346 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pen:PSEEN1081 peptidase U62 TldD; peptidase U62 modulator of DNA gyrase complement(4708907..4710346) Pseudomonas putida W619 6113244 YP_001751125.1 CDS PputW619_4276 NC_010501.1 4710349 4711200 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1080 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4710349..4711200) Pseudomonas putida W619 6113245 YP_001751126.1 CDS PputW619_4277 NC_010501.1 4711215 4715024 R KEGG: pen:PSEEN1079 hypothetical protein; hypothetical protein complement(4711215..4715024) Pseudomonas putida W619 6113246 YP_001751127.1 CDS PputW619_4278 NC_010501.1 4715113 4716570 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pen:PSEEN1078 ibonuclease G; ribonuclease complement(4715113..4716570) Pseudomonas putida W619 6113247 YP_001751128.1 CDS PputW619_4279 NC_010501.1 4716625 4717236 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(4716625..4717236) Pseudomonas putida W619 6113248 YP_001751129.1 CDS PputW619_4280 NC_010501.1 4717270 4717758 R TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: pen:PSEEN1076 rod shape-determining protein MreD; rod shape-determining protein MreD complement(4717270..4717758) Pseudomonas putida W619 6113249 YP_001751130.1 CDS PputW619_4281 NC_010501.1 4717758 4718759 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4717758..4718759) Pseudomonas putida W619 6113250 YP_001751131.1 CDS PputW619_4282 NC_010501.1 4718985 4720022 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4718985..4720022) Pseudomonas putida W619 6113251 YP_001751132.1 CDS gatC NC_010501.1 4720227 4720514 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 4720227..4720514 Pseudomonas putida W619 6113252 YP_001751133.1 CDS gatA NC_010501.1 4720530 4721981 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 4720530..4721981 Pseudomonas putida W619 6113253 YP_001751134.1 CDS gatB NC_010501.1 4721993 4723438 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 4721993..4723438 Pseudomonas putida W619 6113254 YP_001751135.1 CDS PputW619_4286 NC_010501.1 4723511 4723978 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pen:PSEEN1070 lipoprotein, RplA family; rare lipoprotein A 4723511..4723978 Pseudomonas putida W619 6113255 YP_001751136.1 CDS PputW619_4287 NC_010501.1 4724051 4725082 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: pen:PSEEN1069 K+-dependent Na+/Ca+ antiporter; CaCA family Na(+)/Ca(+) antiporter 4724051..4725082 Pseudomonas putida W619 6113256 YP_001751137.1 CDS PputW619_4288 NC_010501.1 4725159 4726514 R PFAM: amino acid permease-associated region; KEGG: pen:PSEEN1067 aromatic amino acid transporter, APC family; amino acid permease-associated protein complement(4725159..4726514) Pseudomonas putida W619 6113257 YP_001751138.1 CDS PputW619_4289 NC_010501.1 4726570 4727511 R PFAM: Auxin Efflux Carrier; KEGG: pen:PSEEN1066 hypothetical protein; auxin efflux carrier complement(4726570..4727511) Pseudomonas putida W619 6113258 YP_001751139.1 CDS PputW619_4290 NC_010501.1 4727722 4728285 R PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: pen:PSEEN1063 response regulator, RegA/PrrA/ActR type; two component Fis family transcriptional regulator complement(4727722..4728285) Pseudomonas putida W619 6113259 YP_001751140.1 CDS PputW619_4291 NC_010501.1 4728282 4729538 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN1062 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4728282..4729538) Pseudomonas putida W619 6113260 YP_001751141.1 CDS PputW619_4292 NC_010501.1 4729741 4730457 D PFAM: protein of unknown function DUF541; KEGG: pen:PSEEN1061 hypothetical protein; hypothetical protein 4729741..4730457 Pseudomonas putida W619 6113261 YP_001751142.1 CDS PputW619_4293 NC_010501.1 4730767 4732392 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1060 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 4730767..4732392 Pseudomonas putida W619 6113262 YP_001751143.1 CDS PputW619_4294 NC_010501.1 4732528 4734120 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1059 dipeptide ABC transporter, periplasmic peptide-binding protein; extracellular solute-binding protein 4732528..4734120 Pseudomonas putida W619 6113263 YP_001751144.1 CDS PputW619_4295 NC_010501.1 4734342 4735721 D PFAM: outer membrane porin; KEGG: pen:PSEEN1058 porin, OprD family; outer membrane porin 4734342..4735721 Pseudomonas putida W619 6113264 YP_001751145.1 CDS PputW619_4296 NC_010501.1 4735795 4737390 D PFAM: extracellular solute-binding protein family 5; KEGG: pen:PSEEN1057 dipeptide ABC transporter, periplasmic dipeptide-binding protein; extracellular solute-binding protein 4735795..4737390 Pseudomonas putida W619 6113265 YP_001751146.1 CDS PputW619_4297 NC_010501.1 4737467 4738477 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1056 dipeptide ABC transporter, permease protein; alkaline phosphatase 4737467..4738477 Pseudomonas putida W619 6113266 YP_001751147.1 CDS PputW619_4298 NC_010501.1 4738488 4739414 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1055 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4738488..4739414 Pseudomonas putida W619 6113267 YP_001751148.1 CDS PputW619_4299 NC_010501.1 4739425 4740393 D KEGG: pen:PSEEN1054 dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 4739425..4740393 Pseudomonas putida W619 6113268 YP_001751149.1 CDS dppF NC_010501.1 4740393 4741361 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 4740393..4741361 Pseudomonas putida W619 6113269 YP_001751150.1 CDS PputW619_4301 NC_010501.1 4741573 4742460 R KEGG: pfl:PFL_2576 hypothetical protein; hypothetical protein complement(4741573..4742460) Pseudomonas putida W619 6113270 YP_001751151.1 CDS PputW619_4302 NC_010501.1 4742711 4743520 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN1051 transcriptional regulator, AraC family; AraC family transcriptional regulator 4742711..4743520 Pseudomonas putida W619 6113271 YP_001751152.1 CDS PputW619_4303 NC_010501.1 4743585 4744991 D PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN1050 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4743585..4744991 Pseudomonas putida W619 6113272 YP_001751153.1 CDS PputW619_4304 NC_010501.1 4745024 4745365 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: pen:PSEEN1049 hypothetical protein; hypothetical protein 4745024..4745365 Pseudomonas putida W619 6113273 YP_001751154.1 CDS PputW619_4305 NC_010501.1 4745418 4746497 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN1048 periplasmic polyamine-binding protein; extracellular solute-binding protein 4745418..4746497 Pseudomonas putida W619 6113274 YP_001751155.1 CDS prfC NC_010501.1 4746609 4748192 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(4746609..4748192) Pseudomonas putida W619 6113275 YP_001751156.1 CDS PputW619_4307 NC_010501.1 4748640 4749353 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1043 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4748640..4749353 Pseudomonas putida W619 6113276 YP_001751157.1 CDS PputW619_4308 NC_010501.1 4749367 4750278 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN1042 glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein; glycine betaine ABC transporter substrate-binding protein 4749367..4750278 Pseudomonas putida W619 6113277 YP_001751158.1 CDS PputW619_4309 NC_010501.1 4750275 4750928 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN1041 glycine betaine/carnitine/choline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 4750275..4750928 Pseudomonas putida W619 6113278 YP_001751159.1 CDS PputW619_4310 NC_010501.1 4750925 4752082 D KEGG: pen:PSEEN1040 glycine betaine/carnitine/choline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 4750925..4752082 Pseudomonas putida W619 6113279 YP_001751160.1 CDS PputW619_4311 NC_010501.1 4752194 4754623 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN1039 FecA-like outer membrane receptor; TonB-dependent siderophore receptor complement(4752194..4754623) Pseudomonas putida W619 6113280 YP_001751161.1 CDS PputW619_4312 NC_010501.1 4754732 4755694 R PFAM: FecR protein; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor; anti-FecI sigma factor FecR complement(4754732..4755694) Pseudomonas putida W619 6113281 YP_001751162.1 CDS PputW619_4313 NC_010501.1 4755712 4756200 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1037 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor complement(4755712..4756200) Pseudomonas putida W619 6113282 YP_001751163.1 CDS PputW619_4314 NC_010501.1 4756709 4757872 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pen:PSEEN1035 ornithine decarboxylase; ornithine decarboxylase 4756709..4757872 Pseudomonas putida W619 6113283 YP_001751164.1 CDS PputW619_4315 NC_010501.1 4758024 4758773 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN1032 hypothetical protein; Sel1 domain-containing protein complement(4758024..4758773) Pseudomonas putida W619 6113284 YP_001751165.1 CDS PputW619_4316 NC_010501.1 4758777 4759457 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pen:PSEEN1031 PKHD-type hydroxylase; iron-uptake factor; putative hydroxylase complement(4758777..4759457) Pseudomonas putida W619 6113285 YP_001751166.1 CDS PputW619_4317 NC_010501.1 4759678 4761960 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN1029 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4759678..4761960 Pseudomonas putida W619 6113286 YP_001751167.1 CDS PputW619_4318 NC_010501.1 4762063 4764618 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: pen:PSEEN1028 sulfite reductase flavoprotein alpha-component; iron-regulated membrane protein; flavodoxin/nitric oxide synthase 4762063..4764618 Pseudomonas putida W619 6113287 YP_001751168.1 CDS PputW619_4319 NC_010501.1 4764782 4765573 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN1027 hydrolase, carbon-nitrogen hydrolase family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4764782..4765573) Pseudomonas putida W619 6113288 YP_001751169.1 CDS PputW619_4320 NC_010501.1 4765561 4766709 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(4765561..4766709) Pseudomonas putida W619 6113289 YP_001751170.1 CDS engA NC_010501.1 4766829 4768292 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(4766829..4768292) Pseudomonas putida W619 6113290 YP_001751171.1 CDS PputW619_4322 NC_010501.1 4768410 4769579 R TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: pen:PSEEN1024 hypothetical protein; outer membrane assembly lipoprotein YfgL complement(4768410..4769579) Pseudomonas putida W619 6113291 YP_001751172.1 CDS PputW619_4323 NC_010501.1 4769554 4770195 R KEGG: pen:PSEEN1023 hypothetical protein; hypothetical protein complement(4769554..4770195) Pseudomonas putida W619 6113292 YP_001751173.1 CDS hisS NC_010501.1 4770235 4771524 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(4770235..4771524) Pseudomonas putida W619 6113293 YP_001751174.1 CDS ispG NC_010501.1 4771549 4772658 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(4771549..4772658) Pseudomonas putida W619 6113294 YP_001751175.1 CDS PputW619_4326 NC_010501.1 4772662 4773693 R SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN1020 transcriptional regulator; XRE family transcriptional regulator complement(4772662..4773693) Pseudomonas putida W619 6113295 YP_001751176.1 CDS PputW619_4327 NC_010501.1 4773690 4774451 R KEGG: pen:PSEEN1019 type IV pili biogenesis protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW complement(4773690..4774451) Pseudomonas putida W619 6113296 YP_001751177.1 CDS PputW619_4328 NC_010501.1 4774465 4775610 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: pen:PSEEN1018 radical SAM enzyme, Cfr family; radical SAM protein complement(4774465..4775610) Pseudomonas putida W619 6113297 YP_001751178.1 CDS ndk NC_010501.1 4775639 4776064 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(4775639..4776064) Pseudomonas putida W619 6113298 YP_001751179.1 CDS PputW619_4330 NC_010501.1 4776154 4776354 R TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: pen:PSEEN1016 hypothetical protein; FeS assembly protein IscX complement(4776154..4776354) Pseudomonas putida W619 6113299 YP_001751180.1 CDS PputW619_4331 NC_010501.1 4776365 4776706 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pen:PSEEN1015 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system complement(4776365..4776706) Pseudomonas putida W619 6113300 YP_001751181.1 CDS hscA NC_010501.1 4776710 4778572 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(4776710..4778572) Pseudomonas putida W619 6113301 YP_001751182.1 CDS hscB NC_010501.1 4778615 4779136 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(4778615..4779136) Pseudomonas putida W619 6113302 YP_001751183.1 CDS PputW619_4334 NC_010501.1 4779145 4779468 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pen:PSEEN1012 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(4779145..4779468) Pseudomonas putida W619 6113303 YP_001751184.1 CDS PputW619_4335 NC_010501.1 4779511 4779897 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pfl:PFL_4964 scaffold protein; scaffold protein complement(4779511..4779897) Pseudomonas putida W619 6113304 YP_001751185.1 CDS PputW619_4336 NC_010501.1 4779944 4781158 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(4779944..4781158) Pseudomonas putida W619 6113305 YP_001751186.1 CDS PputW619_4337 NC_010501.1 4781211 4781663 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN1009 iron-sulfur cluster assembly transcription factor IscR; BadM/Rrf2 family transcriptional regulator complement(4781211..4781663) Pseudomonas putida W619 6113306 YP_001751187.1 CDS PputW619_4338 NC_010501.1 4781882 4782667 R TIGRFAM: serine O-acetyltransferase; KEGG: pen:PSEEN1007 serine O-acetyltransferase; serine O-acetyltransferase complement(4781882..4782667) Pseudomonas putida W619 6113307 YP_001751188.1 CDS PputW619_4339 NC_010501.1 4782671 4783426 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pen:PSEEN1006 tRNA/rRNA methyltransferase, TrmH family, group 1; RNA methyltransferase complement(4782671..4783426) Pseudomonas putida W619 6113308 YP_001751189.1 CDS PputW619_4340 NC_010501.1 4783577 4784395 D PFAM: inositol monophosphatase; KEGG: pen:PSEEN1005 inositol-1-monophosphatase (IMPase) (inositol-1-phosphatase) (I-1-Pase); inositol-phosphate phosphatase 4783577..4784395 Pseudomonas putida W619 6113309 YP_001751190.1 CDS PputW619_4341 NC_010501.1 4784453 4784986 R PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN1004 hypothetical protein; hypothetical protein complement(4784453..4784986) Pseudomonas putida W619 6113310 YP_001751191.1 CDS secF NC_010501.1 4785119 4786027 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(4785119..4786027) Pseudomonas putida W619 6113311 YP_001751192.1 CDS secD NC_010501.1 4786038 4787900 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(4786038..4787900) Pseudomonas putida W619 6113312 YP_001751193.1 CDS yajC NC_010501.1 4787963 4788298 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(4787963..4788298) Pseudomonas putida W619 6113313 YP_001751194.1 CDS tgt NC_010501.1 4788343 4789476 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(4788343..4789476) Pseudomonas putida W619 6113314 YP_001751195.1 CDS queA NC_010501.1 4789473 4790522 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(4789473..4790522) Pseudomonas putida W619 6113315 YP_001751196.1 CDS PputW619_4347 NC_010501.1 4790924 4792132 D PFAM: integrase family protein; KEGG: pst:PSPTO_5344 site-specific recombinase, phage integrase family; integrase family protein 4790924..4792132 Pseudomonas putida W619 6113317 YP_001751197.1 CDS PputW619_4348 NC_010501.1 4792154 4793014 D KEGG: aci:ACIAD2140 hypothetical protein; hypothetical protein 4792154..4793014 Pseudomonas putida W619 6113318 YP_001751198.1 CDS PputW619_4349 NC_010501.1 4793114 4793338 D PFAM: Prophage CP4-57 regulatory; KEGG: pin:Ping_0242 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 4793114..4793338 Pseudomonas putida W619 6113319 YP_001751199.1 CDS PputW619_4350 NC_010501.1 4794188 4794598 D KEGG: pap:PSPA7_0363 virulence-associated protein E; virulence-associated protein E 4794188..4794598 Pseudomonas putida W619 6113320 YP_001751200.1 CDS PputW619_4351 NC_010501.1 4794595 4795782 D KEGG: pol:Bpro_2969 hypothetical protein; hypothetical protein 4794595..4795782 Pseudomonas putida W619 6113321 YP_001751201.1 CDS PputW619_4352 NC_010501.1 4796191 4796415 D hypothetical protein 4796191..4796415 Pseudomonas putida W619 6113322 YP_001751202.1 CDS PputW619_4353 NC_010501.1 4796418 4798280 D PFAM: peptidase S14 ClpP; KEGG: sbn:Sbal195_0787 peptidase S14 ClpP; peptidase S14 ClpP 4796418..4798280 Pseudomonas putida W619 6113323 YP_001751203.1 CDS PputW619_4354 NC_010501.1 4798294 4799631 D PFAM: integrase family protein; KEGG: vvy:VVA0857 phage integrase; integrase family protein 4798294..4799631 Pseudomonas putida W619 6113324 YP_001751204.1 CDS PputW619_4355 NC_010501.1 4800195 4800440 D hypothetical protein 4800195..4800440 Pseudomonas putida W619 6113325 YP_001751205.1 CDS PputW619_4356 NC_010501.1 4800656 4801987 R PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_4940 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(4800656..4801987) Pseudomonas putida W619 6113326 YP_001751206.1 CDS PputW619_4357 NC_010501.1 4802338 4802961 D KEGG: ppr:PBPRA0472 hypothetical protein; hypothetical protein 4802338..4802961 Pseudomonas putida W619 6113327 YP_001751207.1 CDS PputW619_4358 NC_010501.1 4803161 4804084 D PFAM: protein of unknown function UPF0187; KEGG: pen:PSEEN0996 hypothetical protein; hypothetical protein 4803161..4804084 Pseudomonas putida W619 6113328 YP_001751208.1 CDS PputW619_4359 NC_010501.1 4804056 4804823 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0995 phosphonate ABC transporter, permease protein; phosphonate ABC transporter inner membrane subunit complement(4804056..4804823) Pseudomonas putida W619 6113329 YP_001751209.1 CDS PputW619_4360 NC_010501.1 4804820 4805647 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0994 phosphonate ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(4804820..4805647) Pseudomonas putida W619 6113330 YP_001751210.1 CDS PputW619_4361 NC_010501.1 4805641 4806435 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0993 phosphonate ABC transporter, ATP-binding protein; ABC transporter-like protein complement(4805641..4806435) Pseudomonas putida W619 6113331 YP_001751211.1 CDS PputW619_4362 NC_010501.1 4806432 4807286 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: pen:PSEEN0992 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(4806432..4807286) Pseudomonas putida W619 6113332 YP_001751212.1 CDS PputW619_4363 NC_010501.1 4807410 4808444 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 4807410..4808444 Pseudomonas putida W619 6113333 YP_001751213.1 CDS PputW619_4364 NC_010501.1 4808444 4809541 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 4808444..4809541 Pseudomonas putida W619 6113334 YP_001751214.1 CDS PputW619_4365 NC_010501.1 4809649 4810035 R PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN0989 hypothetical protein; hypothetical protein complement(4809649..4810035) Pseudomonas putida W619 6113335 YP_001751215.1 CDS PputW619_4366 NC_010501.1 4810055 4810594 R KEGG: pen:PSEEN0987 hypothetical protein; hypothetical protein complement(4810055..4810594) Pseudomonas putida W619 6113336 YP_001751216.1 CDS PputW619_4367 NC_010501.1 4810591 4811154 R PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0985 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(4810591..4811154) Pseudomonas putida W619 6113337 YP_001751217.1 CDS PputW619_4368 NC_010501.1 4811297 4811548 R KEGG: pen:PSEEN0608 hypothetical protein; hypothetical protein complement(4811297..4811548) Pseudomonas putida W619 6113338 YP_001751218.1 CDS PputW619_4369 NC_010501.1 4811541 4811795 R KEGG: pen:PSEEN0938 hypothetical protein; hypothetical protein complement(4811541..4811795) Pseudomonas putida W619 6113339 YP_001751219.1 CDS PputW619_4370 NC_010501.1 4812265 4812648 R PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0966 hypothetical protein; hypothetical protein complement(4812265..4812648) Pseudomonas putida W619 6113340 YP_001751220.1 CDS PputW619_4371 NC_010501.1 4812802 4814010 R PFAM: aminotransferase class I and II; KEGG: pen:PSEEN0965 aminotransferase (transaminase); aminotransferase complement(4812802..4814010) Pseudomonas putida W619 6113341 YP_001751221.1 CDS PputW619_4372 NC_010501.1 4814251 4815138 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(4814251..4815138) Pseudomonas putida W619 6113342 YP_001751222.1 CDS PputW619_4373 NC_010501.1 4815150 4815482 R TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: pen:PSEEN0959 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV complement(4815150..4815482) Pseudomonas putida W619 6113343 YP_001751223.1 CDS PputW619_4374 NC_010501.1 4815482 4816105 R TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: pen:PSEEN0958 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III complement(4815482..4816105) Pseudomonas putida W619 6113344 YP_001751224.1 CDS PputW619_4375 NC_010501.1 4816109 4818127 R KEGG: pen:PSEEN0957 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I complement(4816109..4818127) Pseudomonas putida W619 6113345 YP_001751225.1 CDS PputW619_4376 NC_010501.1 4818131 4819075 R TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: pen:PSEEN0956 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II complement(4818131..4819075) Pseudomonas putida W619 6113346 YP_001751226.1 CDS PputW619_4377 NC_010501.1 4819634 4820140 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(4819634..4820140) Pseudomonas putida W619 6113347 YP_001751227.1 CDS PputW619_4378 NC_010501.1 4820515 4821693 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(4820515..4821693) Pseudomonas putida W619 6113348 YP_001751228.1 CDS PputW619_4379 NC_010501.1 4821849 4823399 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 4821849..4823399 Pseudomonas putida W619 6113349 YP_001751229.1 CDS PputW619_4380 NC_010501.1 4823584 4835355 D KEGG: par:Psyc_1601 hypothetical protein; hypothetical protein 4823584..4835355 Pseudomonas putida W619 6113350 YP_001751230.1 CDS PputW619_4381 NC_010501.1 4835419 4836852 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ses:SARI_00237 hypothetical protein; TolC family type I secretion outer membrane protein 4835419..4836852 Pseudomonas putida W619 6113351 YP_001751231.1 CDS PputW619_4382 NC_010501.1 4836849 4839017 D KEGG: aeh:Mlg_2167 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 4836849..4839017 Pseudomonas putida W619 6113352 YP_001751232.1 CDS PputW619_4383 NC_010501.1 4839014 4840198 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ses:SARI_00235 hypothetical protein; HlyD family type I secretion membrane fusion protein 4839014..4840198 Pseudomonas putida W619 6113353 YP_001751233.1 CDS PputW619_4384 NC_010501.1 4840382 4841281 D PFAM: response regulator receiver; CheW domain protein; KEGG: pen:PSEEN0950 chemotaxis signal transduction protein CheW-like; response regulator receiver modulated CheW protein 4840382..4841281 Pseudomonas putida W619 6113354 YP_001751234.1 CDS PputW619_4385 NC_010501.1 4841378 4841689 D KEGG: pen:PSEEN0948 hypothetical protein; hypothetical protein 4841378..4841689 Pseudomonas putida W619 6113355 YP_001751235.1 CDS PputW619_4386 NC_010501.1 4841668 4842420 D PFAM: protein of unknown function UPF0153; KEGG: pen:PSEEN0947 hypothetical protein; hypothetical protein 4841668..4842420 Pseudomonas putida W619 6113356 YP_001751236.1 CDS PputW619_4387 NC_010501.1 4842533 4842784 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(4842533..4842784) Pseudomonas putida W619 6113357 YP_001751237.1 CDS PputW619_4388 NC_010501.1 4842781 4843170 R KEGG: pen:PSEEN0938 hypothetical protein; hypothetical protein complement(4842781..4843170) Pseudomonas putida W619 6113358 YP_001751238.1 CDS PputW619_4389 NC_010501.1 4843512 4844675 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0945 multidrug RND transporter, membrane fusion protein (HylD family); RND family efflux transporter MFP subunit 4843512..4844675 Pseudomonas putida W619 6113359 YP_001751239.1 CDS PputW619_4390 NC_010501.1 4844672 4847764 D PFAM: acriflavin resistance protein; KEGG: pen:PSEEN0944 multidrug transport protein; acriflavin resistance protein family; acriflavin resistance protein 4844672..4847764 Pseudomonas putida W619 6113360 YP_001751240.1 CDS PputW619_4391 NC_010501.1 4847774 4848448 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pen:PSEEN0943 DNA-binding heavy metal response regulator; two component heavy metal response transcriptional regulator 4847774..4848448 Pseudomonas putida W619 6113361 YP_001751241.1 CDS PputW619_4392 NC_010501.1 4848423 4849835 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0942 heavy metal sensor histidine kinase; heavy metal sensor signal transduction histidine kinase 4848423..4849835 Pseudomonas putida W619 6113362 YP_001751242.1 CDS PputW619_4393 NC_010501.1 4849967 4850188 D KEGG: pen:PSEEN0941 hypothetical protein; hypothetical protein 4849967..4850188 Pseudomonas putida W619 6113363 YP_001751243.1 CDS PputW619_4394 NC_010501.1 4850393 4851727 D PFAM: outer membrane porin; KEGG: pen:PSEEN0940 porin OprD family; outer membrane porin 4850393..4851727 Pseudomonas putida W619 6113364 YP_001751244.1 CDS PputW619_4395 NC_010501.1 4851987 4853483 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0937 hypothetical protein; diguanylate cyclase 4851987..4853483 Pseudomonas putida W619 6113365 YP_001751245.1 CDS PputW619_4396 NC_010501.1 4853480 4853956 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0936 hypothetical protein; hypothetical protein complement(4853480..4853956) Pseudomonas putida W619 6113366 YP_001751246.1 CDS PputW619_4397 NC_010501.1 4854158 4854379 D KEGG: pen:PSEEN0935 hypothetical protein; hypothetical protein 4854158..4854379 Pseudomonas putida W619 6113367 YP_001751247.1 CDS PputW619_4398 NC_010501.1 4854489 4856228 R TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: pen:PSEEN0934 phosphotransferase system FruA, fructose-specific IIBC component; PTS system fructose subfamily transporter subunit IIC complement(4854489..4856228) Pseudomonas putida W619 6113368 YP_001751248.1 CDS PputW619_4399 NC_010501.1 4856225 4857172 R KEGG: pen:PSEEN0933 1-phosphofructokinase FruK; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase complement(4856225..4857172) Pseudomonas putida W619 6113369 YP_001751249.1 CDS PputW619_4400 NC_010501.1 4857173 4860025 R TIGRFAM: phosphocarrier, HPr family; phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: pen:PSEEN0932 phosphotransferase system FruB, fructose-specific EI/HPr/EIIA components; phosphoenolpyruvate-protein phosphotransferase complement(4857173..4860025) Pseudomonas putida W619 6113370 YP_001751250.1 CDS PputW619_4401 NC_010501.1 4860322 4861317 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 4860322..4861317 Pseudomonas putida W619 6113371 YP_001751251.1 CDS PputW619_4402 NC_010501.1 4861320 4862096 D PFAM: TatD-related deoxyribonuclease; KEGG: pen:PSEEN0930 deoxyribonuclease, TatD family (metal-dependent); TatD-related deoxyribonuclease 4861320..4862096 Pseudomonas putida W619 6113372 YP_001751252.1 CDS PputW619_4403 NC_010501.1 4862103 4864115 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0929 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4862103..4864115) Pseudomonas putida W619 6113373 YP_001751253.1 CDS PputW619_4404 NC_010501.1 4864218 4865048 R KEGG: pen:PSEEN0928 inner membrane protein AmpE; signaling modulator of AmpD, AmpE complement(4864218..4865048) Pseudomonas putida W619 6113374 YP_001751254.1 CDS PputW619_4405 NC_010501.1 4865045 4865617 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0927 N-acetyl-anhydromuramyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase complement(4865045..4865617) Pseudomonas putida W619 6113375 YP_001751255.1 CDS PputW619_4406 NC_010501.1 4865703 4867868 R PFAM: protein of unknown function DUF1631; KEGG: pen:PSEEN0926 hypothetical protein; hypothetical protein complement(4865703..4867868) Pseudomonas putida W619 6113376 YP_001751256.1 CDS PputW619_4407 NC_010501.1 4868112 4868960 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 4868112..4868960 Pseudomonas putida W619 6113377 YP_001751257.1 CDS PputW619_4408 NC_010501.1 4869034 4869996 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0924 thioredoxin reductase; thioredoxin reductase complement(4869034..4869996) Pseudomonas putida W619 6113378 YP_001751258.1 CDS PputW619_4409 NC_010501.1 4870327 4871055 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 4870327..4871055 Pseudomonas putida W619 6113379 YP_001751259.1 CDS PputW619_4410 NC_010501.1 4871159 4872475 R KEGG: pen:PSEEN0922 methyl-accepting chemotaxis transducer/sensory box protein; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing methyl-accepting chemotaxis sensory transducer complement(4871159..4872475) Pseudomonas putida W619 6113380 YP_001751260.1 CDS PputW619_4411 NC_010501.1 4872650 4873864 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN0921 glycosyl transferase, group 1; glycosyl transferase group 1 protein 4872650..4873864 Pseudomonas putida W619 6113381 YP_001751261.1 CDS PputW619_4412 NC_010501.1 4873833 4874936 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pen:PSEEN0920 FMN-linked oxidoreductase, Oye family; NADH:flavin oxidoreductase complement(4873833..4874936) Pseudomonas putida W619 6113382 YP_001751262.1 CDS PputW619_4413 NC_010501.1 4875062 4875544 R PFAM: glutathione peroxidase; KEGG: pen:PSEEN0919 glutathione peroxidase; glutathione peroxidase complement(4875062..4875544) Pseudomonas putida W619 6113383 YP_001751263.1 CDS PputW619_4414 NC_010501.1 4875687 4876172 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0918 peptidyl-prolyl cis-trans isomerase SlyD (FKBP-type); FKBP-type peptidylprolyl isomerase complement(4875687..4876172) Pseudomonas putida W619 6113384 YP_001751264.1 CDS PputW619_4415 NC_010501.1 4876505 4878592 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 4876505..4878592 Pseudomonas putida W619 6113385 YP_001751265.1 CDS PputW619_4416 NC_010501.1 4878713 4879435 R PFAM: OmpA/MotB domain protein; KEGG: pen:PSEEN0915 outer membrane protein, OmpA family; OmpA/MotB domain-containing protein complement(4878713..4879435) Pseudomonas putida W619 6113386 YP_001751266.1 CDS PputW619_4417 NC_010501.1 4879545 4880189 R PFAM: beta-lactamase domain protein; KEGG: pen:PSEEN0914 hydrolase; metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(4879545..4880189) Pseudomonas putida W619 6113387 YP_001751267.1 CDS PputW619_4418 NC_010501.1 4880205 4880552 R toxin of the ChpB-ChpS toxin-antitoxin system; toxin ChpB complement(4880205..4880552) Pseudomonas putida W619 6113388 YP_001751268.1 CDS PputW619_4419 NC_010501.1 4880549 4880827 R PFAM: SpoVT/AbrB domain protein; KEGG: psb:Psyr_0889 SpoVT/AbrB-like; transcriptional regulator/antitoxin MazE complement(4880549..4880827) Pseudomonas putida W619 6113389 YP_001751269.1 CDS PputW619_4420 NC_010501.1 4881006 4881698 R PFAM: ATP-binding region ATPase domain protein; KEGG: pen:PSEEN0913 sensor histidine kinase; histidine kinase complement(4881006..4881698) Pseudomonas putida W619 6113390 YP_001751270.1 CDS PputW619_4421 NC_010501.1 4881695 4883302 R PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0912 response regulator/TPR domain protein; response regulator receiver protein complement(4881695..4883302) Pseudomonas putida W619 6113391 YP_001751271.1 CDS PputW619_4422 NC_010501.1 4883462 4886179 R PFAM: regulatory protein LuxR; SMART: AAA ATPase; KEGG: pen:PSEEN0911 transcriptional regulator, LuxR family; ATP-dependent transcriptional regulator LuxR complement(4883462..4886179) Pseudomonas putida W619 6113392 YP_001751272.1 CDS PputW619_4423 NC_010501.1 4886453 4887817 R PFAM: protein of unknown function DUF1329; KEGG: pen:PSEEN0910 hypothetical protein; hypothetical protein complement(4886453..4887817) Pseudomonas putida W619 6113393 YP_001751273.1 CDS PputW619_4424 NC_010501.1 4887843 4889762 R PFAM: protein of unknown function DUF1302; KEGG: psb:Psyr_0991 protein of unknown function DUF1302; hypothetical protein complement(4887843..4889762) Pseudomonas putida W619 6113394 YP_001751274.1 CDS PputW619_4425 NC_010501.1 4890094 4891776 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(4890094..4891776) Pseudomonas putida W619 6113395 YP_001751275.1 CDS PputW619_4426 NC_010501.1 4891938 4892903 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 4891938..4892903 Pseudomonas putida W619 6113396 YP_001751276.1 CDS PputW619_4427 NC_010501.1 4892957 4893952 D PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pen:PSEEN0906 ribosomal RNA small subunit methyltransferase C; rRNA (guanine-N(2)-)-methyltransferase 4892957..4893952 Pseudomonas putida W619 6113397 YP_001751277.1 CDS PputW619_4428 NC_010501.1 4894202 4894786 D PFAM: protein of unknown function UPF0016; KEGG: pen:PSEEN0905 hypothetical protein; hypothetical protein 4894202..4894786 Pseudomonas putida W619 6113398 YP_001751278.1 CDS PputW619_4429 NC_010501.1 4894859 4895674 R PFAM: peptidase M48 Ste24p; KEGG: pen:PSEEN0904 zinc-dependent peptidase, M48 family; peptidase M48 Ste24p complement(4894859..4895674) Pseudomonas putida W619 6113399 YP_001751279.1 CDS PputW619_4430 NC_010501.1 4895772 4896392 R PFAM: protein of unknown function DUF159; KEGG: pen:PSEEN0902 hypothetical protein; hypothetical protein complement(4895772..4896392) Pseudomonas putida W619 6113400 YP_001751280.1 CDS PputW619_4431 NC_010501.1 4896408 4896668 R KEGG: pen:PSEEN0901 hypothetical protein; hypothetical protein complement(4896408..4896668) Pseudomonas putida W619 6113401 YP_001751281.1 CDS PputW619_4432 NC_010501.1 4896668 4896853 R KEGG: pen:PSEEN0900 hypothetical protein; hypothetical protein complement(4896668..4896853) Pseudomonas putida W619 6113402 YP_001751282.1 CDS PputW619_4433 NC_010501.1 4896976 4898145 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN0898 hypothetical protein; phospholipid/glycerol acyltransferase 4896976..4898145 Pseudomonas putida W619 6113403 YP_001751283.1 CDS PputW619_4434 NC_010501.1 4898177 4898437 R KEGG: pen:PSEEN0897 hypothetical protein; hypothetical protein complement(4898177..4898437) Pseudomonas putida W619 6113404 YP_001751284.1 CDS PputW619_4435 NC_010501.1 4898598 4898804 D KEGG: pen:PSEEN0896 hypothetical protein; hypothetical protein 4898598..4898804 Pseudomonas putida W619 6113405 YP_001751285.1 CDS PputW619_4436 NC_010501.1 4898879 4899463 R KEGG: pen:PSEEN0895 lipoprotein; lipoprotein complement(4898879..4899463) Pseudomonas putida W619 6113406 YP_001751286.1 CDS PputW619_4437 NC_010501.1 4899668 4899901 D KEGG: pen:PSEEN0894 hypothetical protein; hypothetical protein 4899668..4899901 Pseudomonas putida W619 6113407 YP_001751287.1 CDS PputW619_4438 NC_010501.1 4900505 4902010 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 4900505..4902010 Pseudomonas putida W619 6113408 YP_001751288.1 CDS PputW619_4439 NC_010501.1 4902179 4902469 R KEGG: pen:PSEEN0892 hypothetical protein; hypothetical protein complement(4902179..4902469) Pseudomonas putida W619 6113409 YP_001751289.1 CDS PputW619_4440 NC_010501.1 4902537 4903007 R KEGG: pen:PSEEN0891 hypothetical protein; hypothetical protein complement(4902537..4903007) Pseudomonas putida W619 6113410 YP_001751290.1 CDS PputW619_4441 NC_010501.1 4903061 4903534 R KEGG: pen:PSEEN0890 hypothetical protein; hypothetical protein complement(4903061..4903534) Pseudomonas putida W619 6113411 YP_001751291.1 CDS PputW619_4442 NC_010501.1 4903537 4904094 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(4903537..4904094) Pseudomonas putida W619 6113412 YP_001751292.1 CDS upp NC_010501.1 4904255 4904893 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 4904255..4904893 Pseudomonas putida W619 6113413 YP_001751293.1 CDS PputW619_4444 NC_010501.1 4904896 4906161 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pen:PSEEN0887 uracil permease; uracil-xanthine permease 4904896..4906161 Pseudomonas putida W619 6113414 YP_001751294.1 CDS hemH NC_010501.1 4906207 4907220 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(4906207..4907220) Pseudomonas putida W619 6113415 YP_001751295.1 CDS PputW619_4446 NC_010501.1 4907234 4908139 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; domain of unknown function DUF1731; KEGG: pen:PSEEN0885 hypothetical protein; NAD-dependent epimerase/dehydratase complement(4907234..4908139) Pseudomonas putida W619 6113416 YP_001751296.1 CDS PputW619_4447 NC_010501.1 4908326 4909312 D KEGG: pen:PSEEN0884 hypothetical protein; hypothetical protein 4908326..4909312 Pseudomonas putida W619 6113417 YP_001751297.1 CDS PputW619_4448 NC_010501.1 4909419 4910387 D PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: pen:PSEEN0883 hypothetical protein; hypothetical protein 4909419..4910387 Pseudomonas putida W619 6113418 YP_001751298.1 CDS PputW619_4449 NC_010501.1 4910377 4911258 D PFAM: regulatory protein MerR; KEGG: pen:PSEEN0882 transcriptional regulator, MerR family; MerR family transcriptional regulator 4910377..4911258 Pseudomonas putida W619 6113419 YP_001751299.1 CDS PputW619_4450 NC_010501.1 4911266 4912708 D PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: pen:PSEEN0881 deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding; deoxyribodipyrimidine photo-lyase 4911266..4912708 Pseudomonas putida W619 6113420 YP_001751300.1 CDS PputW619_4451 NC_010501.1 4912705 4913403 D KEGG: pen:PSEEN0880 oxidoreductase, short-chain dehydrogenase/reductase family; short chain dehydrogenase/reductase family oxidoreductase 4912705..4913403 Pseudomonas putida W619 6113421 YP_001751301.1 CDS PputW619_4452 NC_010501.1 4913465 4913983 R KEGG: pfl:PFL_5155 hypothetical protein; hypothetical protein complement(4913465..4913983) Pseudomonas putida W619 6113422 YP_001751302.1 CDS PputW619_4453 NC_010501.1 4914089 4914886 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(4914089..4914886) Pseudomonas putida W619 6113423 YP_001751303.1 CDS PputW619_4454 NC_010501.1 4914879 4915634 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(4914879..4915634) Pseudomonas putida W619 6113424 YP_001751304.1 CDS PputW619_4455 NC_010501.1 4915628 4916458 R TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: pen:PSEEN0877 methylase of polypeptide chain release factors; protein-(glutamine-N5) methyltransferase complement(4915628..4916458) Pseudomonas putida W619 6113425 YP_001751305.1 CDS prfA NC_010501.1 4916458 4917540 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(4916458..4917540) Pseudomonas putida W619 6113426 YP_001751306.1 CDS hemA NC_010501.1 4917537 4918814 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(4917537..4918814) Pseudomonas putida W619 6113427 YP_001751307.1 CDS PputW619_4458 NC_010501.1 4919003 4920724 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pen:PSEEN0860 hypothetical protein; hypothetical protein 4919003..4920724 Pseudomonas putida W619 6113428 YP_001751308.1 CDS lolB NC_010501.1 4920729 4921346 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 4920729..4921346 Pseudomonas putida W619 6113429 YP_001751309.1 CDS ipk NC_010501.1 4921350 4922210 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4921350..4922210 Pseudomonas putida W619 6113430 YP_001751310.1 CDS PputW619_4461 NC_010501.1 4922362 4923294 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 4922362..4923294 Pseudomonas putida W619 6113432 YP_001751311.1 CDS PputW619_4462 NC_010501.1 4923413 4924009 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 4923413..4924009 Pseudomonas putida W619 6113433 YP_001751312.1 CDS PputW619_4463 NC_010501.1 4924086 4924670 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 4924086..4924670 Pseudomonas putida W619 6113434 YP_001751313.1 CDS PputW619_4464 NC_010501.1 4924693 4925793 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 4924693..4925793 Pseudomonas putida W619 6113435 YP_001751314.1 CDS PputW619_4465 NC_010501.1 4926069 4927790 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: reu:Reut_A0690 sulphate anion transporter; sulfate transporter 4926069..4927790 Pseudomonas putida W619 6113436 YP_001751315.1 CDS PputW619_4466 NC_010501.1 4927795 4928805 R KEGG: reh:H16_A2415 predicted membrane protein; membrane protein complement(4927795..4928805) Pseudomonas putida W619 6113437 YP_001751316.1 CDS PputW619_4467 NC_010501.1 4928795 4929880 R PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD; secretion protein HlyD family protein complement(4928795..4929880) Pseudomonas putida W619 6113438 YP_001751317.1 CDS PputW619_4468 NC_010501.1 4929880 4931391 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2417 outer membrane heavy metal efflux protein; RND efflux system outer membrane lipoprotein complement(4929880..4931391) Pseudomonas putida W619 6113439 YP_001751318.1 CDS PputW619_4469 NC_010501.1 4931405 4932502 R PFAM: protein of unknown function UPF0118; KEGG: reh:H16_A2418 predicted permease; hypothetical protein complement(4931405..4932502) Pseudomonas putida W619 6113440 YP_001751319.1 CDS PputW619_4470 NC_010501.1 4932542 4933738 R TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; KEGG: pfo:Pfl_3513 potassium efflux system protein; potassium efflux system protein complement(4932542..4933738) Pseudomonas putida W619 6113441 YP_001751320.1 CDS PputW619_4471 NC_010501.1 4933775 4934593 R PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN2681 hypothetical protein; hypothetical protein complement(4933775..4934593) Pseudomonas putida W619 6113442 YP_001751321.1 CDS PputW619_4472 NC_010501.1 4934645 4935265 R PFAM: isochorismatase hydrolase; KEGG: pen:PSEEN0851 hydrolase; isochorismatase hydrolase family; isochorismatase hydrolase complement(4934645..4935265) Pseudomonas putida W619 6113443 YP_001751322.1 CDS PputW619_4473 NC_010501.1 4935512 4935901 D KEGG: pen:PSEEN0850 hypothetical protein; hypothetical protein 4935512..4935901 Pseudomonas putida W619 6113444 YP_001751323.1 CDS PputW619_4474 NC_010501.1 4935995 4937497 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN0849 transporter, NCS1 nucleoside transporter family; cytosine/purines uracil thiamine allantoin permease 4935995..4937497 Pseudomonas putida W619 6113445 YP_001751324.1 CDS PputW619_4475 NC_010501.1 4937511 4938941 D PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0848 betaine-aldehyde dehydrogenase; aldehyde dehydrogenase 4937511..4938941 Pseudomonas putida W619 6113446 YP_001751325.1 CDS PputW619_4476 NC_010501.1 4939040 4941439 R PFAM: MscS Mechanosensitive ion channel; KEGG: pen:PSEEN0846 ion mechanosensitive channel; mechanosensitive ion channel MscS complement(4939040..4941439) Pseudomonas putida W619 6113447 YP_001751326.1 CDS PputW619_4477 NC_010501.1 4941496 4942548 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pen:PSEEN0845 O6-methylguanine-DNA methyltransferase; AraC family transcriptional regulator complement(4941496..4942548) Pseudomonas putida W619 6113448 YP_001751327.1 CDS PputW619_4478 NC_010501.1 4942579 4943205 R PFAM: HhH-GPD family protein; KEGG: pen:PSEEN0843 DNA-3-methyladenine glycosylase; DNA-3-methyladenine glycosylase II complement(4942579..4943205) Pseudomonas putida W619 6113449 YP_001751328.1 CDS PputW619_4479 NC_010501.1 4943375 4943890 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4943375..4943890 Pseudomonas putida W619 6113450 YP_001751329.1 CDS PputW619_4480 NC_010501.1 4943877 4944833 D PFAM: FecR protein; KEGG: pae:PA2467 probable transmembrane sensor; anti-FecI sigma factor FecR 4943877..4944833 Pseudomonas putida W619 6113451 YP_001751330.1 CDS PputW619_4481 NC_010501.1 4944930 4947404 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; TonB-dependent siderophore receptor 4944930..4947404 Pseudomonas putida W619 6113452 YP_001751331.1 CDS PputW619_4482 NC_010501.1 4947504 4948664 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0842 major facilitator family transporter; major facilitator transporter complement(4947504..4948664) Pseudomonas putida W619 6113453 YP_001751332.1 CDS PputW619_4483 NC_010501.1 4949096 4950307 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0841 fosmidomycin/multidrug transport protein (MFS superfamily); major facilitator transporter complement(4949096..4950307) Pseudomonas putida W619 6113454 YP_001751333.1 CDS PputW619_4484 NC_010501.1 4950487 4951419 D PFAM: FecR protein; KEGG: pen:PSEEN0840 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 4950487..4951419 Pseudomonas putida W619 6113455 YP_001751334.1 CDS PputW619_4485 NC_010501.1 4951668 4952279 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pen:PSEEN0839 transporter, LysE family; lysine exporter protein LysE/YggA complement(4951668..4952279) Pseudomonas putida W619 6113457 YP_001751335.1 CDS PputW619_4486 NC_010501.1 4952425 4953339 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0838 transcriptional regulator, LysR family; LysR family transcriptional regulator 4952425..4953339 Pseudomonas putida W619 6113458 YP_001751336.1 CDS PputW619_4487 NC_010501.1 4953279 4953863 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: acb:A1S_1248 hypothetical protein; hypothetical protein complement(4953279..4953863) Pseudomonas putida W619 6113459 YP_001751337.1 CDS PputW619_4488 NC_010501.1 4953970 4954425 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN0835 ribosomal-protein-alanine acetyltransferase RimI; ribosomal-protein-alanine acetyltransferase complement(4953970..4954425) Pseudomonas putida W619 6113460 YP_001751338.1 CDS PputW619_4489 NC_010501.1 4954422 4955246 R KEGG: pen:PSEEN0834 hypothetical protein; hypothetical protein complement(4954422..4955246) Pseudomonas putida W619 6113461 YP_001751339.1 CDS PputW619_4490 NC_010501.1 4955432 4956709 D KEGG: pen:PSEEN0833 hypothetical protein; hypothetical protein 4955432..4956709 Pseudomonas putida W619 6113462 YP_001751340.1 CDS PputW619_4491 NC_010501.1 4956699 4957406 D KEGG: pen:PSEEN0832 hypothetical protein; hypothetical protein 4956699..4957406 Pseudomonas putida W619 6113463 YP_001751341.1 CDS PputW619_4492 NC_010501.1 4957403 4960234 D KEGG: pen:PSEEN0831 hypothetical protein; hypothetical protein 4957403..4960234 Pseudomonas putida W619 6113464 YP_001751342.1 CDS PputW619_4493 NC_010501.1 4960353 4960814 R PFAM: CreA family protein; KEGG: pfo:Pfl_4856 CreA; CreA family protein complement(4960353..4960814) Pseudomonas putida W619 6113465 YP_001751343.1 CDS PputW619_4494 NC_010501.1 4960811 4961929 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(4960811..4961929) Pseudomonas putida W619 6113466 YP_001751344.1 CDS obgE NC_010501.1 4962017 4963243 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(4962017..4963243) Pseudomonas putida W619 6113467 YP_001751345.1 CDS rpmA NC_010501.1 4963434 4963691 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(4963434..4963691) Pseudomonas putida W619 6113468 YP_001751346.1 CDS rplU NC_010501.1 4963730 4964044 R PFAM: ribosomal protein L21; KEGG: pen:PSEEN0825 50S ribosomal subunit protein L21; 50S ribosomal protein L21 complement(4963730..4964044) Pseudomonas putida W619 6113469 YP_001751347.1 CDS PputW619_4498 NC_010501.1 4964290 4965258 D PFAM: Polyprenyl synthetase; KEGG: pen:PSEEN0824 octaprenyl-diphosphate synthase; polyprenyl synthetase 4964290..4965258 Pseudomonas putida W619 6113470 YP_001751348.1 CDS PputW619_4499 NC_010501.1 4965419 4965760 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: pen:PSEEN0823 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 4965419..4965760 Pseudomonas putida W619 6113471 YP_001751349.1 CDS PputW619_4500 NC_010501.1 4965843 4966088 D KEGG: pen:PSEEN0822 hypothetical protein; hypothetical protein 4965843..4966088 Pseudomonas putida W619 6113472 YP_001751350.1 CDS PputW619_4501 NC_010501.1 4966206 4966823 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN0821 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase complement(4966206..4966823) Pseudomonas putida W619 6113473 YP_001751351.1 CDS PputW619_4502 NC_010501.1 4966909 4967214 R KEGG: pen:PSEEN0820 hypothetical protein; hypothetical protein complement(4966909..4967214) Pseudomonas putida W619 6113474 YP_001751352.1 CDS PputW619_4503 NC_010501.1 4967359 4967847 R PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0819 hypothetical protein; hypothetical protein complement(4967359..4967847) Pseudomonas putida W619 6113475 YP_001751353.1 CDS PputW619_4504 NC_010501.1 4968049 4968387 R KEGG: pen:PSEEN0818 hypothetical protein; hypothetical protein complement(4968049..4968387) Pseudomonas putida W619 6113476 YP_001751354.1 CDS PputW619_4505 NC_010501.1 4968551 4970989 R KEGG: pen:PSEEN0817 ATP-dependent protease; ATP-dependent protease complement(4968551..4970989) Pseudomonas putida W619 6113477 YP_001751355.1 CDS PputW619_4506 NC_010501.1 4971241 4971729 D KEGG: pen:PSEEN0816 hypothetical protein; hypothetical protein 4971241..4971729 Pseudomonas putida W619 6113478 YP_001751356.1 CDS PputW619_4507 NC_010501.1 4971804 4973657 D KEGG: pen:PSEEN0815 hypothetical protein; hypothetical protein 4971804..4973657 Pseudomonas putida W619 6113479 YP_001751357.1 CDS PputW619_4508 NC_010501.1 4973859 4974356 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pen:PSEEN0813 transcription elongation factor; GreA/GreB family elongation factor 4973859..4974356 Pseudomonas putida W619 6113480 YP_001751358.1 CDS PputW619_4509 NC_010501.1 4974494 4975834 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(4974494..4975834) Pseudomonas putida W619 6113481 YP_001751359.1 CDS PputW619_4510 NC_010501.1 4976079 4977746 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(4976079..4977746) Pseudomonas putida W619 6113482 YP_001751360.1 CDS PputW619_4511 NC_010501.1 4977954 4978346 R KEGG: pen:PSEEN0809 hypothetical protein; hypothetical protein complement(4977954..4978346) Pseudomonas putida W619 6113483 YP_001751361.1 CDS PputW619_4512 NC_010501.1 4978604 4982434 D KEGG: pen:PSEEN0807 sensory box protein(GGDEF domain/EAL domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4978604..4982434 Pseudomonas putida W619 6113484 YP_001751362.1 CDS glyA NC_010501.1 4982630 4983883 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4982630..4983883 Pseudomonas putida W619 6113485 YP_001751363.1 CDS PputW619_4514 NC_010501.1 4984047 4985000 D PFAM: Bile acid:sodium symporter; KEGG: pen:PSEEN4637 transporter, bile acid/Na+ symporter family; bile acid:sodium symporter 4984047..4985000 Pseudomonas putida W619 6113486 YP_001751364.1 CDS PputW619_4515 NC_010501.1 4985060 4986250 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_5406 drug resistance transporter, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(4985060..4986250) Pseudomonas putida W619 6113487 YP_001751365.1 CDS PputW619_4516 NC_010501.1 4986300 4986899 R KEGG: bvi:Bcep1808_5407 hypothetical protein; hypothetical protein complement(4986300..4986899) Pseudomonas putida W619 6113488 YP_001751366.1 CDS PputW619_4517 NC_010501.1 4986916 4988397 R PFAM: AMP-dependent synthetase and ligase; KEGG: bvi:Bcep1808_5408 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4986916..4988397) Pseudomonas putida W619 6113489 YP_001751367.1 CDS PputW619_4518 NC_010501.1 4988394 4989326 R KEGG: bvi:Bcep1808_5409 taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA complement(4988394..4989326) Pseudomonas putida W619 6113490 YP_001751368.1 CDS PputW619_4519 NC_010501.1 4989455 4990393 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bvi:Bcep1808_5410 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4989455..4990393) Pseudomonas putida W619 6113491 YP_001751369.1 CDS PputW619_4520 NC_010501.1 4990419 4990925 R PFAM: regulatory protein MarR; KEGG: zmo:ZMO0054 MarR family transcriptional regulator; MarR family transcriptional regulator complement(4990419..4990925) Pseudomonas putida W619 6113492 YP_001751370.1 CDS PputW619_4521 NC_010501.1 4991051 4991863 D PFAM: alpha/beta hydrolase fold; KEGG: zmo:ZMO0053 putative beta-ketoadipate enol-lactone hydrolase; alpha/beta hydrolase fold family protein 4991051..4991863 Pseudomonas putida W619 6113493 YP_001751371.1 CDS PputW619_4522 NC_010501.1 4991856 4993028 D PFAM: major facilitator superfamily MFS_1; KEGG: zmo:ZMO0052 cyanate permease; major facilitator transporter 4991856..4993028 Pseudomonas putida W619 6113494 YP_001751372.1 CDS PputW619_4523 NC_010501.1 4993183 4993404 R KEGG: pen:PSEEN4652 hypothetical protein; hypothetical protein complement(4993183..4993404) Pseudomonas putida W619 6113495 YP_001751373.1 CDS PputW619_4524 NC_010501.1 4994574 4995152 R PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: bvi:Bcep1808_6200 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein complement(4994574..4995152) Pseudomonas putida W619 6113496 YP_001751374.1 CDS PputW619_4525 NC_010501.1 4995670 4995864 D KEGG: pen:PSEEN2864 transposase, IS256 family; IS256 family transposase 4995670..4995864 Pseudomonas putida W619 6113497 YP_001751375.1 CDS PputW619_4526 NC_010501.1 4996453 4996839 R PFAM: Carboxymuconolactone decarboxylase; KEGG: pen:PSEEN1068 4-carboxymuconolactone decarboxylase PcaC; carboxymuconolactone decarboxylase complement(4996453..4996839) Pseudomonas putida W619 6113498 YP_001751376.1 CDS PputW619_4527 NC_010501.1 4996865 4998139 R PFAM: outer membrane porin; KEGG: pfo:Pfl_3451 outer membrane porin; outer membrane porin complement(4996865..4998139) Pseudomonas putida W619 6113499 YP_001751377.1 CDS PputW619_4528 NC_010501.1 4998283 4998810 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: dac:Daci_5297 cupin 2 conserved barrel domain protein; cupin complement(4998283..4998810) Pseudomonas putida W619 6113500 YP_001751378.1 CDS PputW619_4529 NC_010501.1 4998963 5000000 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pde:Pden_4528 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator complement(4998963..5000000) Pseudomonas putida W619 6113501 YP_001751379.1 CDS PputW619_4530 NC_010501.1 5000135 5001076 D PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: azc:AZC_3212 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase 5000135..5001076 Pseudomonas putida W619 6113502 YP_001751380.1 CDS PputW619_4531 NC_010501.1 5001082 5002020 D PFAM: protein of unknown function DUF849; KEGG: bpt:Bpet3914 hypothetical protein; hypothetical protein 5001082..5002020 Pseudomonas putida W619 6113503 YP_001751381.1 CDS PputW619_4532 NC_010501.1 5002132 5003496 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B4121 general substrate transporter:major facilitator superfamily MFS_1; major facilitator transporter 5002132..5003496 Pseudomonas putida W619 6113504 YP_001751382.1 CDS PputW619_4533 NC_010501.1 5003735 5004379 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: oan:Oant_3278 resolvase domain protein; resolvase domain-containing protein complement(5003735..5004379) Pseudomonas putida W619 6113505 YP_001751383.1 CDS PputW619_4534 NC_010501.1 5004574 5005338 R KEGG: bpa:BPP1266 hypothetical protein; hypothetical protein complement(5004574..5005338) Pseudomonas putida W619 6113506 YP_001751384.1 CDS PputW619_4535 NC_010501.1 5006142 5007563 R PFAM: integrase family protein; KEGG: rme:Rmet_2561 phage integrase; integrase family protein complement(5006142..5007563) Pseudomonas putida W619 6113507 YP_001751385.1 CDS PputW619_4536 NC_010501.1 5007720 5008130 R PFAM: Fimbrial protein pilin; KEGG: pen:PSEEN4666 type IV pili prepilin PilA; fimbrial protein pilin complement(5007720..5008130) Pseudomonas putida W619 6113509 YP_001751386.1 CDS PputW619_4537 NC_010501.1 5008346 5009554 D PFAM: type II secretion system protein; KEGG: pen:PSEEN4667 type IV fimbrial assembly protein; type II secretion system protein 5008346..5009554 Pseudomonas putida W619 6113510 YP_001751387.1 CDS PputW619_4538 NC_010501.1 5009557 5010423 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: pen:PSEEN4668 type IV pili prepilin peptidase PilD/XcpA; prepilin peptidase 5009557..5010423 Pseudomonas putida W619 6113511 YP_001751388.1 CDS coaE NC_010501.1 5010423 5011046 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 5010423..5011046 Pseudomonas putida W619 6113512 YP_001751389.1 CDS PputW619_4540 NC_010501.1 5011043 5011243 D PFAM: protein of unknown function DUF329; KEGG: pen:PSEEN4670 hypothetical protein; zinc-binding protein 5011043..5011243 Pseudomonas putida W619 6113513 YP_001751390.1 CDS PputW619_4541 NC_010501.1 5011374 5012114 R KEGG: pen:PSEEN4671 hypothetical protein; hypothetical protein complement(5011374..5012114) Pseudomonas putida W619 6113514 YP_001751391.1 CDS PputW619_4542 NC_010501.1 5012149 5012778 D PFAM: Protein of unknown function DUF1780; KEGG: pen:PSEEN4673 hypothetical protein; hypothetical protein 5012149..5012778 Pseudomonas putida W619 6113515 YP_001751392.1 CDS PputW619_4543 NC_010501.1 5012911 5013084 D KEGG: pen:PSEEN4674 hypothetical protein; hypothetical protein 5012911..5013084 Pseudomonas putida W619 6113516 YP_001751393.1 CDS PputW619_4544 NC_010501.1 5013169 5014464 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN4675 NADH dehydrogenase II; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 5013169..5014464 Pseudomonas putida W619 6113517 YP_001751394.1 CDS PputW619_4545 NC_010501.1 5015391 5017955 R KEGG: pen:PSEEN4678 ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(5015391..5017955) Pseudomonas putida W619 6113521 YP_001751395.1 CDS PputW619_4546 NC_010501.1 5018142 5018882 R PFAM: protein of unknown function DUF152; KEGG: pen:PSEEN4679 hypothetical protein; hypothetical protein complement(5018142..5018882) Pseudomonas putida W619 6113522 YP_001751396.1 CDS PputW619_4547 NC_010501.1 5018879 5019937 R KEGG: pen:PSEEN4680 23S rRNA pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(5018879..5019937) Pseudomonas putida W619 6113523 YP_001751397.1 CDS PputW619_4548 NC_010501.1 5019989 5021008 D KEGG: pen:PSEEN4681 competence lipoprotein ComL; competence lipoprotein ComL 5019989..5021008 Pseudomonas putida W619 6113524 YP_001751398.1 CDS PputW619_4549 NC_010501.1 5021102 5021332 D KEGG: pen:PSEEN4682 hypothetical protein; hypothetical protein 5021102..5021332 Pseudomonas putida W619 6113525 YP_001751399.1 CDS PputW619_4550 NC_010501.1 5021435 5022532 R TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN4683 oxidoreductase, FAD-binding; glycine oxidase ThiO complement(5021435..5022532) Pseudomonas putida W619 6113526 YP_001751400.1 CDS PputW619_4551 NC_010501.1 5022586 5022975 R KEGG: pen:PSEEN4684 type IV pili biogenesis protein PilE; type IV pili biogenesis protein PilE complement(5022586..5022975) Pseudomonas putida W619 6113527 YP_001751401.1 CDS PputW619_4552 NC_010501.1 5022977 5023450 R KEGG: pen:PSEEN4685 hypothetical protein; hypothetical protein complement(5022977..5023450) Pseudomonas putida W619 6113528 YP_001751402.1 CDS PputW619_4553 NC_010501.1 5023447 5024094 R KEGG: pen:PSEEN4686 hypothetical protein; hypothetical protein complement(5023447..5024094) Pseudomonas putida W619 6113529 YP_001751403.1 CDS PputW619_4554 NC_010501.1 5024091 5024246 R hypothetical protein complement(5024091..5024246) Pseudomonas putida W619 6113530 YP_001751404.1 CDS PputW619_4555 NC_010501.1 5024410 5024901 D KEGG: pen:PSEEN4688 type IV pili biogenesis protein FimT; type IV pili biogenesis protein FimT 5024410..5024901 Pseudomonas putida W619 6113531 YP_001751405.1 CDS ispH NC_010501.1 5024902 5025849 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(5024902..5025849) Pseudomonas putida W619 6113532 YP_001751406.1 CDS PputW619_4557 NC_010501.1 5025864 5026301 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pen:PSEEN4690 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidylprolyl isomerase complement(5025864..5026301) Pseudomonas putida W619 6113533 YP_001751407.1 CDS lspA NC_010501.1 5026294 5026809 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(5026294..5026809) Pseudomonas putida W619 6113534 YP_001751408.1 CDS ileS NC_010501.1 5026802 5029633 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(5026802..5029633) Pseudomonas putida W619 6113535 YP_001751409.1 CDS PputW619_4560 NC_010501.1 5029630 5030580 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(5029630..5030580) Pseudomonas putida W619 6113536 YP_001751410.1 CDS PputW619_4561 NC_010501.1 5030699 5032237 R TIGRFAM: integral membrane protein MviN; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pen:PSEEN4694 virulence factor MviN family; integral membrane protein MviN complement(5030699..5032237) Pseudomonas putida W619 6113537 YP_001751411.1 CDS rpsT NC_010501.1 5032488 5032766 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 5032488..5032766 Pseudomonas putida W619 6113538 YP_001751412.1 CDS PputW619_4563 NC_010501.1 5032907 5035207 R PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN4696 paraquat-inducible protein B; hypothetical protein complement(5032907..5035207) Pseudomonas putida W619 6113539 YP_001751413.1 CDS PputW619_4564 NC_010501.1 5035200 5035823 R PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4697 paraquat-inducible protein A; paraquat-inducible protein A complement(5035200..5035823) Pseudomonas putida W619 6113540 YP_001751414.1 CDS PputW619_4565 NC_010501.1 5035810 5036469 R PFAM: Paraquat-inducible protein A; KEGG: pen:PSEEN4698 paraquat-inducible protein A; paraquat-inducible protein A complement(5035810..5036469) Pseudomonas putida W619 6113541 YP_001751415.1 CDS PputW619_4566 NC_010501.1 5042339 5043832 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase_; KEGG: pen:PSEEN0682 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(5042339..5043832) Pseudomonas putida W619 6113547 YP_001751416.1 CDS PputW619_4567 NC_010501.1 5043906 5045252 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(5043906..5045252) Pseudomonas putida W619 6113548 YP_001751417.1 CDS PputW619_4568 NC_010501.1 5045371 5046288 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0680 transcriptional regulator, LysR family; LysR family transcriptional regulator 5045371..5046288 Pseudomonas putida W619 6113549 YP_001751418.1 CDS PputW619_4569 NC_010501.1 5046379 5047041 D PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: pen:PSEEN0679 transcriptional regulator, TetR/AcrR family; TetR family transcriptional regulator 5046379..5047041 Pseudomonas putida W619 6113550 YP_001751419.1 CDS PputW619_4570 NC_010501.1 5047051 5047635 D PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: pen:PSEEN0678 hypothetical protein; hypothetical protein 5047051..5047635 Pseudomonas putida W619 6113551 YP_001751420.1 CDS PputW619_4571 NC_010501.1 5047999 5048685 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pen:PSEEN0676 oxidoreductase, short chain dehydrogenase/reductase family; short chain dehydrogenase 5047999..5048685 Pseudomonas putida W619 6113552 YP_001751421.1 CDS PputW619_4572 NC_010501.1 5048792 5049739 D catalyzes the formation of inosine from adenosine; adenosine deaminase 5048792..5049739 Pseudomonas putida W619 6113553 YP_001751422.1 CDS PputW619_4573 NC_010501.1 5049758 5050465 R SMART: regulatory protein ArsR; KEGG: pen:PSEEN0673 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(5049758..5050465) Pseudomonas putida W619 6113554 YP_001751423.1 CDS PputW619_4574 NC_010501.1 5050964 5051161 D KEGG: pfl:PFL_0714 hypothetical protein; hypothetical protein 5050964..5051161 Pseudomonas putida W619 6113555 YP_001751424.1 CDS PputW619_4575 NC_010501.1 5051112 5052293 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family; Bcr/CflA subfamily drug resistance transporter complement(5051112..5052293) Pseudomonas putida W619 6113556 YP_001751425.1 CDS PputW619_4576 NC_010501.1 5052402 5052599 R PFAM: Heavy metal transport/detoxification protein; KEGG: pen:PSEEN0671 copper-binding protein; heavy metal transport/detoxification protein complement(5052402..5052599) Pseudomonas putida W619 6113557 YP_001751426.1 CDS PputW619_4577 NC_010501.1 5052745 5053131 D KEGG: pen:PSEEN0670 hypothetical protein; hypothetical protein 5052745..5053131 Pseudomonas putida W619 6113558 YP_001751427.1 CDS PputW619_4578 NC_010501.1 5053184 5055583 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pen:PSEEN0669 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 5053184..5055583 Pseudomonas putida W619 6113559 YP_001751428.1 CDS PputW619_4579 NC_010501.1 5055580 5055984 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: pen:PSEEN0668 transcription regulator heavy metal-dependent MerE family; MerR family transcriptional regulator 5055580..5055984 Pseudomonas putida W619 6113560 YP_001751429.1 CDS PputW619_4580 NC_010501.1 5056165 5058111 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN0666 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5056165..5058111 Pseudomonas putida W619 6113561 YP_001751430.1 CDS PputW619_4581 NC_010501.1 5058171 5058950 R SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pen:PSEEN0665 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5058171..5058950) Pseudomonas putida W619 6113562 YP_001751431.1 CDS PputW619_4582 NC_010501.1 5059021 5060298 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(5059021..5060298) Pseudomonas putida W619 6113563 YP_001751432.1 CDS fabG NC_010501.1 5060417 5061769 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 5060417..5061769 Pseudomonas putida W619 6113564 YP_001751433.1 CDS PputW619_4584 NC_010501.1 5061772 5062623 D PFAM: MaoC domain protein dehydratase; KEGG: pen:PSEEN0662 hypothetical protein; dehydratase 5061772..5062623 Pseudomonas putida W619 6113565 YP_001751434.1 CDS PputW619_4585 NC_010501.1 5062707 5063012 D KEGG: pen:PSEEN0661 hypothetical protein; hypothetical protein 5062707..5063012 Pseudomonas putida W619 6113566 YP_001751435.1 CDS PputW619_4586 NC_010501.1 5063009 5063758 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN0660 methyltransferase; type 12 methyltransferase 5063009..5063758 Pseudomonas putida W619 6113567 YP_001751436.1 CDS PputW619_4587 NC_010501.1 5063780 5064415 D KEGG: pen:PSEEN0659 lipoprotein; lipoprotein 5063780..5064415 Pseudomonas putida W619 6113568 YP_001751437.1 CDS PputW619_4588 NC_010501.1 5064435 5065004 D KEGG: pen:PSEEN0658 lipoprotein; lipoprotein 5064435..5065004 Pseudomonas putida W619 6113569 YP_001751438.1 CDS PputW619_4589 NC_010501.1 5065098 5065568 D PFAM: peptidase A24A prepilin type IV; KEGG: pen:PSEEN0654 prepilin peptidase; typeII/IV secretion; peptidase A24A prepilin type IV 5065098..5065568 Pseudomonas putida W619 6113570 YP_001751439.1 CDS PputW619_4590 NC_010501.1 5065688 5066464 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pen:PSEEN0653 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator 5065688..5066464 Pseudomonas putida W619 6113571 YP_001751440.1 CDS PputW619_4591 NC_010501.1 5066527 5068185 R PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: pen:PSEEN0640 hypothetical protein; polypeptide-transport-associated domain-containing protein complement(5066527..5068185) Pseudomonas putida W619 6113572 YP_001751441.1 CDS PputW619_4592 NC_010501.1 5068278 5070632 R penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C complement(5068278..5070632) Pseudomonas putida W619 6113573 YP_001751442.1 CDS PputW619_4593 NC_010501.1 5070710 5071003 D KEGG: pen:PSEEN4843 hypothetical protein; hypothetical protein 5070710..5071003 Pseudomonas putida W619 6113574 YP_001751443.1 CDS PputW619_4594 NC_010501.1 5071167 5076068 R PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pen:PSEEN4844 hypothetical protein; alpha-2-macroglobulin domain-containing protein complement(5071167..5076068) Pseudomonas putida W619 6113575 YP_001751444.1 CDS PputW619_4595 NC_010501.1 5076303 5077640 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; MATE efflux family protein 5076303..5077640 Pseudomonas putida W619 6113576 YP_001751445.1 CDS PputW619_4596 NC_010501.1 5077778 5077939 D KEGG: pen:PSEEN4845 DNA-damage-inducible protein F; hypothetical protein 5077778..5077939 Pseudomonas putida W619 6113577 YP_001751446.1 CDS PputW619_4597 NC_010501.1 5078056 5078511 R KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein complement(5078056..5078511) Pseudomonas putida W619 6113578 YP_001751447.1 CDS PputW619_4598 NC_010501.1 5078664 5080577 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(5078664..5080577) Pseudomonas putida W619 6113579 YP_001751448.1 CDS PputW619_4599 NC_010501.1 5080727 5081098 R involved in start site selection during the initiation of translation; translation initiation factor Sui1 complement(5080727..5081098) Pseudomonas putida W619 6113580 YP_001751449.1 CDS PputW619_4600 NC_010501.1 5081316 5081852 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4850 IPP isomerase type 1; NUDIX hydrolase complement(5081316..5081852) Pseudomonas putida W619 6113581 YP_001751450.1 CDS PputW619_4601 NC_010501.1 5081855 5082922 R KEGG: pen:PSEEN4851 hypothetical protein; hypothetical protein complement(5081855..5082922) Pseudomonas putida W619 6113582 YP_001751451.1 CDS PputW619_4602 NC_010501.1 5083169 5084548 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pen:PSEEN4852 diguanylate cyclase (GGDEF domain)/response regulator; response regulator receiver modulated diguanylate cyclase 5083169..5084548 Pseudomonas putida W619 6113583 YP_001751452.1 CDS PputW619_4603 NC_010501.1 5084662 5086623 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4853 methyl-accepting chemotaxis transducer for inorganic phosphate CtpL; methyl-accepting chemotaxis sensory transducer 5084662..5086623 Pseudomonas putida W619 6113584 YP_001751453.1 CDS dipZ NC_010501.1 5086700 5088481 D two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 5086700..5088481 Pseudomonas putida W619 6113585 YP_001751454.1 CDS PputW619_4605 NC_010501.1 5088661 5089113 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 5088661..5089113 Pseudomonas putida W619 6113586 YP_001751455.1 CDS PputW619_4606 NC_010501.1 5089215 5089676 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 5089215..5089676 Pseudomonas putida W619 6113587 YP_001751456.1 CDS PputW619_4607 NC_010501.1 5089694 5091049 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 5089694..5091049 Pseudomonas putida W619 6113588 YP_001751457.1 CDS prmA NC_010501.1 5091345 5092223 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 5091345..5092223 Pseudomonas putida W619 6113589 YP_001751458.1 CDS PputW619_4609 NC_010501.1 5092266 5093594 D TIGRFAM: MJ0042 family finger-like protein; KEGG: pen:PSEEN4860 hypothetical protein; Zinc finger-domain-containing protein 5092266..5093594 Pseudomonas putida W619 6113590 YP_001751459.1 CDS PputW619_4610 NC_010501.1 5093808 5094821 D TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pen:PSEEN4861 dihydrouridine synthase TIM-barrel protein nifR3; NifR3 family TIM-barrel protein 5093808..5094821 Pseudomonas putida W619 6113591 YP_001751460.1 CDS fis NC_010501.1 5094818 5095138 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 5094818..5095138 Pseudomonas putida W619 6113592 YP_001751461.1 CDS purH NC_010501.1 5095220 5096827 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5095220..5096827 Pseudomonas putida W619 6113593 YP_001751462.1 CDS PputW619_4613 NC_010501.1 5096995 5098290 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 5096995..5098290 Pseudomonas putida W619 6113594 YP_001751463.1 CDS PputW619_4614 NC_010501.1 5098425 5101196 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: pen:PSEEN4865 sensor histidine kinase/response regulator (hybrid); integral membrane sensor hybrid histidine kinase 5098425..5101196 Pseudomonas putida W619 6113595 YP_001751464.1 CDS PputW619_4615 NC_010501.1 5101337 5101933 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pen:PSEEN4866 membrane protein, MarC family; multiple antibiotic resistance (MarC)-like protein 5101337..5101933 Pseudomonas putida W619 6113596 YP_001751465.1 CDS PputW619_4616 NC_010501.1 5101943 5103634 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pen:PSEEN4868 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase complement(5101943..5103634) Pseudomonas putida W619 6113597 YP_001751466.1 CDS PputW619_4617 NC_010501.1 5103637 5104368 R catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase complement(5103637..5104368) Pseudomonas putida W619 6113598 YP_001751467.1 CDS cobH NC_010501.1 5104368 5104994 R catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase complement(5104368..5104994) Pseudomonas putida W619 6113599 YP_001751468.1 CDS PputW619_4619 NC_010501.1 5104987 5106318 R TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pen:PSEEN4871 precorrin-3B synthase; precorrin-3B synthase complement(5104987..5106318) Pseudomonas putida W619 6113600 YP_001751469.1 CDS PputW619_4620 NC_010501.1 5106476 5107705 D KEGG: pen:PSEEN4872 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 5106476..5107705 Pseudomonas putida W619 6113601 YP_001751470.1 CDS cbiD NC_010501.1 5107698 5108792 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 5107698..5108792 Pseudomonas putida W619 6113602 YP_001751471.1 CDS PputW619_4622 NC_010501.1 5108789 5109508 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5108789..5109508 Pseudomonas putida W619 6113603 YP_001751472.1 CDS PputW619_4623 NC_010501.1 5109600 5109830 D KEGG: pen:PSEEN4875 virulence-assiciated protein MvpT; virulence-assiciated protein MvpT 5109600..5109830 Pseudomonas putida W619 6113604 YP_001751473.1 CDS PputW619_4624 NC_010501.1 5109830 5110240 D PFAM: PilT protein domain protein; KEGG: pen:PSEEN4876 nucleic acid binding protein, PIN domain; PilT domain-containing protein 5109830..5110240 Pseudomonas putida W619 6113605 YP_001751474.1 CDS PputW619_4625 NC_010501.1 5110375 5110812 D PFAM: protein of unknown function DUF107; KEGG: pen:PSEEN4877 hypothetical protein; hypothetical protein 5110375..5110812 Pseudomonas putida W619 6113606 YP_001751475.1 CDS PputW619_4626 NC_010501.1 5110837 5111691 D PFAM: band 7 protein; KEGG: pen:PSEEN4878 hypothetical protein; hypothetical protein 5110837..5111691 Pseudomonas putida W619 6113607 YP_001751476.1 CDS PputW619_4627 NC_010501.1 5111885 5112274 D KEGG: pen:PSEEN4879 hypothetical protein; hypothetical protein 5111885..5112274 Pseudomonas putida W619 6113608 YP_001751477.1 CDS PputW619_4628 NC_010501.1 5112323 5112802 D PFAM: protein of unknown function DUF461; KEGG: pen:PSEEN4881 hypothetical protein; hypothetical protein 5112323..5112802 Pseudomonas putida W619 6113609 YP_001751478.1 CDS PputW619_4629 NC_010501.1 5112829 5113260 D KEGG: pen:PSEEN4882 hypothetical protein; hypothetical protein 5112829..5113260 Pseudomonas putida W619 6113610 YP_001751479.1 CDS PputW619_4630 NC_010501.1 5113326 5115392 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN4883 outer membrane copper receptor OprC; TonB-dependent copper receptor 5113326..5115392 Pseudomonas putida W619 6113611 YP_001751480.1 CDS PputW619_4631 NC_010501.1 5115452 5116816 D PFAM: Propeptide PepSY amd peptidase M4; PepSY-associated TM helix domain protein; KEGG: pen:PSEEN4884 hypothetical protein; peptidase 5115452..5116816 Pseudomonas putida W619 6113612 YP_001751481.1 CDS PputW619_4632 NC_010501.1 5117019 5118425 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 5117019..5118425 Pseudomonas putida W619 6113613 YP_001751482.1 CDS PputW619_4633 NC_010501.1 5118614 5119879 D TIGRFAM: urea ABC transporter, urea binding protein; KEGG: pen:PSEEN4888 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; urea ABC transporter urea binding protein 5118614..5119879 Pseudomonas putida W619 6113614 YP_001751483.1 CDS PputW619_4634 NC_010501.1 5120007 5121494 D TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4889 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtB 5120007..5121494 Pseudomonas putida W619 6113615 YP_001751484.1 CDS PputW619_4635 NC_010501.1 5121494 5122573 D TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: pen:PSEEN4890 branched-chain amino acid ABC transporter, permease protein; urea ABC transporter permease UrtC 5121494..5122573 Pseudomonas putida W619 6113616 YP_001751485.1 CDS PputW619_4636 NC_010501.1 5122570 5123427 D TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pen:PSEEN4891 branched-chain amino acid transport ABC transporter, ATP-binding component; urea ABC transporter ATP-binding protein UrtD 5122570..5123427 Pseudomonas putida W619 6113617 YP_001751486.1 CDS PputW619_4637 NC_010501.1 5123530 5124228 D KEGG: pen:PSEEN4892 branched-chain amino acid ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 5123530..5124228 Pseudomonas putida W619 6113618 YP_001751487.1 CDS PputW619_4638 NC_010501.1 5124260 5124775 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN4893 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5124260..5124775 Pseudomonas putida W619 6113619 YP_001751488.1 CDS PputW619_4639 NC_010501.1 5124840 5125145 R KEGG: pen:PSEEN4895 hypothetical protein; hypothetical protein complement(5124840..5125145) Pseudomonas putida W619 6113620 YP_001751489.1 CDS PputW619_4640 NC_010501.1 5125148 5126101 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein; chaperone DnaJ domain-containing protein complement(5125148..5126101) Pseudomonas putida W619 6113621 YP_001751490.1 CDS PputW619_4641 NC_010501.1 5126266 5127531 D KEGG: pen:PSEEN4897 heat-shock protein, HSP70 family; HSP70 family protein 5126266..5127531 Pseudomonas putida W619 6113622 YP_001751491.1 CDS PputW619_4642 NC_010501.1 5127630 5128637 R KEGG: pen:PSEEN4898 hypothetical protein; hypothetical protein complement(5127630..5128637) Pseudomonas putida W619 6113623 YP_001751492.1 CDS PputW619_4643 NC_010501.1 5128709 5128993 R PFAM: PsiF repeat protein; KEGG: pst:PSPTO_4900 phosphate starvation-inducible protein PsiF; PsiF repeat-containing protein complement(5128709..5128993) Pseudomonas putida W619 6113624 YP_001751493.1 CDS PputW619_4644 NC_010501.1 5129058 5129846 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: pen:PSEEN4900 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5129058..5129846) Pseudomonas putida W619 6113625 YP_001751494.1 CDS PputW619_4645 NC_010501.1 5129990 5130883 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN4902 hypothetical protein; hypothetical protein 5129990..5130883 Pseudomonas putida W619 6113626 YP_001751495.1 CDS PputW619_4646 NC_010501.1 5130864 5131754 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN4903 triacylglycerol lipase; alpha/beta hydrolase fold family protein complement(5130864..5131754) Pseudomonas putida W619 6113627 YP_001751496.1 CDS PputW619_4647 NC_010501.1 5131880 5132221 D osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 5131880..5132221 Pseudomonas putida W619 6113628 YP_001751497.1 CDS PputW619_4648 NC_010501.1 5132270 5132800 D PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: pen:PSEEN4905 bacterioferritin; ferritin Dps family protein 5132270..5132800 Pseudomonas putida W619 6113629 YP_001751498.1 CDS PputW619_4649 NC_010501.1 5132833 5134899 R PFAM: AsmA family protein; KEGG: pen:PSEEN4906 hypothetical protein; AsmA family protein complement(5132833..5134899) Pseudomonas putida W619 6113630 YP_001751499.1 CDS PputW619_4650 NC_010501.1 5135195 5135602 D KEGG: pen:PSEEN4907 hypothetical protein; hypothetical protein 5135195..5135602 Pseudomonas putida W619 6113631 YP_001751500.1 CDS PputW619_4651 NC_010501.1 5135778 5137475 D KEGG: plu:plu2336 hypothetical protein; hypothetical protein 5135778..5137475 Pseudomonas putida W619 6113632 YP_001751501.1 CDS PputW619_4652 NC_010501.1 5137543 5138175 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN4908 transcriptional regulator, TetR family; TetR family transcriptional regulator 5137543..5138175 Pseudomonas putida W619 6113633 YP_001751502.1 CDS PputW619_4653 NC_010501.1 5138226 5139323 D PFAM: N-acylglucosamine 2-epimerase; KEGG: pen:PSEEN4909 mannose-6-phosphate isomerase; N-acylglucosamine 2-epimerase 5138226..5139323 Pseudomonas putida W619 6113634 YP_001751503.1 CDS PputW619_4654 NC_010501.1 5139423 5140190 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN4911 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(5139423..5140190) Pseudomonas putida W619 6113635 YP_001751504.1 CDS PputW619_4655 NC_010501.1 5140798 5141514 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4913 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5140798..5141514) Pseudomonas putida W619 6113636 YP_001751505.1 CDS PputW619_4656 NC_010501.1 5141511 5142386 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN4914 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5141511..5142386) Pseudomonas putida W619 6113637 YP_001751506.1 CDS PputW619_4657 NC_010501.1 5142383 5143684 R PFAM: inner-membrane translocator; KEGG: pen:PSEEN4915 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator complement(5142383..5143684) Pseudomonas putida W619 6113638 YP_001751507.1 CDS PputW619_4658 NC_010501.1 5143687 5144601 R PFAM: inner-membrane translocator; KEGG: pfo:Pfl_0553 inner-membrane translocator; inner-membrane translocator complement(5143687..5144601) Pseudomonas putida W619 6113639 YP_001751508.1 CDS PputW619_4659 NC_010501.1 5144756 5145892 R PFAM: Extracellular ligand-binding receptor; KEGG: pen:PSEEN4917 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor complement(5144756..5145892) Pseudomonas putida W619 6113640 YP_001751509.1 CDS PputW619_4660 NC_010501.1 5146361 5147566 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 5146361..5147566 Pseudomonas putida W619 6113641 YP_001751510.1 CDS nadE NC_010501.1 5147570 5148397 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 5147570..5148397 Pseudomonas putida W619 6113642 YP_001751511.1 CDS PputW619_4662 NC_010501.1 5148513 5148965 R TIGRFAM: azurin; PFAM: blue (type 1) copper domain protein; KEGG: pen:PSEEN4921 azurin; azurin complement(5148513..5148965) Pseudomonas putida W619 6113643 YP_001751512.1 CDS PputW619_4663 NC_010501.1 5149508 5151721 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pen:PSEEN4925 Fe-S oxidase, SAM-binding; hypothetical protein complement(5149508..5151721) Pseudomonas putida W619 6113644 YP_001751513.1 CDS PputW619_4664 NC_010501.1 5151934 5153331 R unwinds double stranded DNA; replicative DNA helicase complement(5151934..5153331) Pseudomonas putida W619 6113645 YP_001751514.1 CDS rplI NC_010501.1 5153445 5153891 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(5153445..5153891) Pseudomonas putida W619 6113646 YP_001751515.1 CDS PputW619_4666 NC_010501.1 5153912 5154775 R KEGG: pen:PSEEN4928 hypothetical protein; hypothetical protein complement(5153912..5154775) Pseudomonas putida W619 6113647 YP_001751516.1 CDS rpsR NC_010501.1 5154809 5155039 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(5154809..5155039) Pseudomonas putida W619 6113648 YP_001751517.1 CDS rpsF NC_010501.1 5155068 5155493 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(5155068..5155493) Pseudomonas putida W619 6113649 YP_001751518.1 CDS PputW619_4669 NC_010501.1 5155800 5156546 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pen:PSEEN4932 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase complement(5155800..5156546) Pseudomonas putida W619 6113650 YP_001751519.1 CDS PputW619_4670 NC_010501.1 5156543 5159122 R KEGG: pen:PSEEN4933 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(5156543..5159122) Pseudomonas putida W619 6113651 YP_001751520.1 CDS PputW619_4671 NC_010501.1 5159839 5160852 D PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN4935 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein 5159839..5160852 Pseudomonas putida W619 6113654 YP_001751521.1 CDS PputW619_4672 NC_010501.1 5160852 5162417 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN4936 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5160852..5162417 Pseudomonas putida W619 6113655 YP_001751522.1 CDS PputW619_4673 NC_010501.1 5162523 5163179 R KEGG: sbn:Sbal195_0134 hypothetical protein; hypothetical protein complement(5162523..5163179) Pseudomonas putida W619 6113656 YP_001751523.1 CDS PputW619_4674 NC_010501.1 5163671 5163889 R KEGG: psp:PSPPH_1886 hypothetical protein; hypothetical protein complement(5163671..5163889) Pseudomonas putida W619 6113657 YP_001751524.1 CDS PputW619_4675 NC_010501.1 5164058 5164432 R hypothetical protein complement(5164058..5164432) Pseudomonas putida W619 6113658 YP_001751525.1 CDS PputW619_4679 NC_010501.1 5166271 5168205 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN4937 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(5166271..5168205) Pseudomonas putida W619 6113661 YP_001751526.1 CDS PputW619_4680 NC_010501.1 5168395 5169687 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(5168395..5169687) Pseudomonas putida W619 6113662 YP_001751527.1 CDS hisZ NC_010501.1 5169744 5170931 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(5169744..5170931) Pseudomonas putida W619 6113663 YP_001751528.1 CDS PputW619_4682 NC_010501.1 5171222 5172091 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pen:PSEEN4940 HflC protein; HflC protein complement(5171222..5172091) Pseudomonas putida W619 6113664 YP_001751529.1 CDS PputW619_4683 NC_010501.1 5172091 5173272 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pen:PSEEN4941 HflK protein; HflK protein complement(5172091..5173272) Pseudomonas putida W619 6113665 YP_001751530.1 CDS PputW619_4684 NC_010501.1 5173369 5174670 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: pen:PSEEN4942 hypothetical protein; GTP-binding proten HflX complement(5173369..5174670) Pseudomonas putida W619 6113666 YP_001751531.1 CDS hfq NC_010501.1 5174683 5174943 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(5174683..5174943) Pseudomonas putida W619 6113667 YP_001751532.1 CDS miaA NC_010501.1 5175038 5176009 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(5175038..5176009) Pseudomonas putida W619 6113668 YP_001751533.1 CDS mutL NC_010501.1 5176011 5177912 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(5176011..5177912) Pseudomonas putida W619 6113669 YP_001751534.1 CDS PputW619_4688 NC_010501.1 5177909 5179342 R PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: pen:PSEEN4946 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(5177909..5179342) Pseudomonas putida W619 6113670 YP_001751535.1 CDS PputW619_4689 NC_010501.1 5179354 5179827 R PFAM: protein of unknown function UPF0079; KEGG: pen:PSEEN4947 hypothetical protein; hypothetical protein complement(5179354..5179827) Pseudomonas putida W619 6113671 YP_001751536.1 CDS PputW619_4690 NC_010501.1 5179815 5180675 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: pen:PSEEN4948 hypothetical protein; carbohydrate kinase complement(5179815..5180675) Pseudomonas putida W619 6113672 YP_001751537.1 CDS PputW619_4691 NC_010501.1 5180741 5181805 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pfo:Pfl_0517 4Fe-4S cluster binding; iron-sulfur cluster binding protein 5180741..5181805 Pseudomonas putida W619 6113673 YP_001751538.1 CDS PputW619_4692 NC_010501.1 5181834 5182445 R PFAM: protein of unknown function UPF0126; KEGG: pen:PSEEN4953 hypothetical protein; hypothetical protein complement(5181834..5182445) Pseudomonas putida W619 6113674 YP_001751539.1 CDS PputW619_4693 NC_010501.1 5182539 5183081 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(5182539..5183081) Pseudomonas putida W619 6113675 YP_001751540.1 CDS PputW619_4694 NC_010501.1 5183242 5184273 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 5183242..5184273 Pseudomonas putida W619 6113676 YP_001751541.1 CDS PputW619_4695 NC_010501.1 5184388 5184867 D KEGG: pen:PSEEN4956 hypothetical protein; hypothetical protein 5184388..5184867 Pseudomonas putida W619 6113677 YP_001751542.1 CDS motB NC_010501.1 5184897 5185916 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(5184897..5185916) Pseudomonas putida W619 6113678 YP_001751543.1 CDS PputW619_4697 NC_010501.1 5185920 5186771 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(5185920..5186771) Pseudomonas putida W619 6113679 YP_001751544.1 CDS PputW619_4698 NC_010501.1 5186902 5188437 D PFAM: Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN4959 hypothetical protein; metal-dependent hydrolase HDOD 5186902..5188437 Pseudomonas putida W619 6113680 YP_001751545.1 CDS PputW619_4699 NC_010501.1 5188482 5189291 D PFAM: Rhodanese domain protein; KEGG: pen:PSEEN4960 thiosulfate sulfurtransferase (rhodanese-like protein); rhodanese domain-containing protein 5188482..5189291 Pseudomonas putida W619 6113681 YP_001751546.1 CDS psd NC_010501.1 5189301 5190164 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 5189301..5190164 Pseudomonas putida W619 6113682 YP_001751547.1 CDS PputW619_4701 NC_010501.1 5190234 5191448 R KEGG: pen:PSEEN4962 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(5190234..5191448) Pseudomonas putida W619 6113683 YP_001751548.1 CDS PputW619_4702 NC_010501.1 5191583 5193049 D KEGG: pen:PSEEN4963 hypothetical protein; hypothetical protein 5191583..5193049 Pseudomonas putida W619 6113684 YP_001751549.1 CDS PputW619_4703 NC_010501.1 5193123 5193833 R PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN4964 hypothetical protein; hypothetical protein complement(5193123..5193833) Pseudomonas putida W619 6113685 YP_001751550.1 CDS PputW619_4704 NC_010501.1 5194009 5196267 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(5194009..5196267) Pseudomonas putida W619 6113686 YP_001751551.1 CDS PputW619_4705 NC_010501.1 5196278 5196796 R KEGG: pen:PSEEN4967 hypothetical protein; hypothetical protein complement(5196278..5196796) Pseudomonas putida W619 6113687 YP_001751552.1 CDS PputW619_4706 NC_010501.1 5196793 5197779 R KEGG: pen:PSEEN4968 hypothetical protein; hypothetical protein complement(5196793..5197779) Pseudomonas putida W619 6113688 YP_001751553.1 CDS PputW619_4707 NC_010501.1 5197776 5199680 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(5197776..5199680) Pseudomonas putida W619 6113689 YP_001751554.1 CDS PputW619_4708 NC_010501.1 5199716 5200324 R PFAM: protein of unknown function UPF0227; KEGG: pen:PSEEN4970 hypothetical protein; hypothetical protein complement(5199716..5200324) Pseudomonas putida W619 6113690 YP_001751555.1 CDS PputW619_4709 NC_010501.1 5200457 5201260 R PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: pen:PSEEN4971 metallo-phosphoesterase; calcineurin phosphoesterase domain-containing protein complement(5200457..5201260) Pseudomonas putida W619 6113691 YP_001751556.1 CDS PputW619_4710 NC_010501.1 5201345 5201791 R PFAM: protein of unknown function DUF1249; KEGG: pen:PSEEN4972 hypothetical protein; hypothetical protein complement(5201345..5201791) Pseudomonas putida W619 6113692 YP_001751557.1 CDS PputW619_4711 NC_010501.1 5201788 5202405 R PFAM: NUDIX hydrolase; KEGG: pen:PSEEN4973 hydrolase, MutT/NUDIX family; NUDIX hydrolase complement(5201788..5202405) Pseudomonas putida W619 6113693 YP_001751558.1 CDS PputW619_4712 NC_010501.1 5202591 5203337 D KEGG: pen:PSEEN4975 lipoprotein; lipoprotein 5202591..5203337 Pseudomonas putida W619 6113694 YP_001751559.1 CDS PputW619_4713 NC_010501.1 5203306 5204589 R TIGRFAM: hydroxymethylpyrimidine transporter CytX; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN4976 transporter, NCS1 nucleoside transporter family; hydroxymethylpyrimidine transporter CytX complement(5203306..5204589) Pseudomonas putida W619 6113695 YP_001751560.1 CDS PputW619_4714 NC_010501.1 5204683 5206569 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(5204683..5206569) Pseudomonas putida W619 6113696 YP_001751561.1 CDS PputW619_4715 NC_010501.1 5206994 5208427 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN4979 type I efflux secretion system outer membrane protein, TolC; TolC family type I secretion outer membrane protein 5206994..5208427 Pseudomonas putida W619 6113697 YP_001751562.1 CDS PputW619_4717 NC_010501.1 5209040 5209405 D PFAM: protein of unknown function DUF336; KEGG: spe:Spro_2446 protein of unknown function DUF336; hypothetical protein 5209040..5209405 Pseudomonas putida W619 6113699 YP_001751563.1 CDS PputW619_4718 NC_010501.1 5209476 5210027 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(5209476..5210027) Pseudomonas putida W619 6113700 YP_001751564.1 CDS PputW619_4719 NC_010501.1 5210037 5211431 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0520 transporter, MFS superfamily; major facilitator transporter complement(5210037..5211431) Pseudomonas putida W619 6113701 YP_001751565.1 CDS uvrA NC_010501.1 5211561 5214395 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 5211561..5214395 Pseudomonas putida W619 6113702 YP_001751566.1 CDS PputW619_4721 NC_010501.1 5214463 5214927 R TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: pen:PSEEN0518 bacterioferritin; bacterioferritin complement(5214463..5214927) Pseudomonas putida W619 6113703 YP_001751567.1 CDS PputW619_4722 NC_010501.1 5215092 5216531 R PFAM: Catalase domain protein; KEGG: pen:PSEEN0517 catalase (hydroperoxidase II)KatA; catalase complement(5215092..5216531) Pseudomonas putida W619 6113704 YP_001751568.1 CDS rplQ NC_010501.1 5216704 5217090 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(5216704..5217090) Pseudomonas putida W619 6113705 YP_001751569.1 CDS PputW619_4724 NC_010501.1 5217133 5218134 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(5217133..5218134) Pseudomonas putida W619 6113706 YP_001751570.1 CDS rpsD NC_010501.1 5218157 5218777 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(5218157..5218777) Pseudomonas putida W619 6113707 YP_001751571.1 CDS PputW619_4726 NC_010501.1 5218793 5219182 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(5218793..5219182) Pseudomonas putida W619 6113708 YP_001751572.1 CDS rpsM NC_010501.1 5219201 5219557 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(5219201..5219557) Pseudomonas putida W619 6113709 YP_001751573.1 CDS rpmJ NC_010501.1 5219689 5219805 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(5219689..5219805) Pseudomonas putida W619 6113710 YP_001751574.1 CDS secY NC_010501.1 5219834 5221165 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(5219834..5221165) Pseudomonas putida W619 6113711 YP_001751575.1 CDS rplO NC_010501.1 5221166 5221600 R late assembly protein; 50S ribosomal protein L15 complement(5221166..5221600) Pseudomonas putida W619 6113712 YP_001751576.1 CDS rpmD NC_010501.1 5221604 5221780 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(5221604..5221780) Pseudomonas putida W619 6113713 YP_001751577.1 CDS rpsE NC_010501.1 5221783 5222283 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(5221783..5222283) Pseudomonas putida W619 6113714 YP_001751578.1 CDS rplR NC_010501.1 5222287 5222637 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(5222287..5222637) Pseudomonas putida W619 6113715 YP_001751579.1 CDS rplF NC_010501.1 5222648 5223181 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(5222648..5223181) Pseudomonas putida W619 6113716 YP_001751580.1 CDS rpsH NC_010501.1 5223194 5223586 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(5223194..5223586) Pseudomonas putida W619 6113717 YP_001751581.1 CDS rpsN NC_010501.1 5223795 5224100 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(5223795..5224100) Pseudomonas putida W619 6113718 YP_001751582.1 CDS rplE NC_010501.1 5224114 5224653 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(5224114..5224653) Pseudomonas putida W619 6113719 YP_001751583.1 CDS rplX NC_010501.1 5224674 5224988 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(5224674..5224988) Pseudomonas putida W619 6113720 YP_001751584.1 CDS rplN NC_010501.1 5225000 5225368 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(5225000..5225368) Pseudomonas putida W619 6113721 YP_001751585.1 CDS rpsQ NC_010501.1 5225392 5225658 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(5225392..5225658) Pseudomonas putida W619 6113722 YP_001751586.1 CDS PputW619_4741 NC_010501.1 5225661 5225855 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(5225661..5225855) Pseudomonas putida W619 6113723 YP_001751587.1 CDS rplP NC_010501.1 5225852 5226265 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(5225852..5226265) Pseudomonas putida W619 6113724 YP_001751588.1 CDS rpsC NC_010501.1 5226278 5226964 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(5226278..5226964) Pseudomonas putida W619 6113725 YP_001751589.1 CDS rplV NC_010501.1 5226978 5227310 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(5226978..5227310) Pseudomonas putida W619 6113726 YP_001751590.1 CDS rpsS NC_010501.1 5227322 5227597 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(5227322..5227597) Pseudomonas putida W619 6113727 YP_001751591.1 CDS rplB NC_010501.1 5227614 5228438 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(5227614..5228438) Pseudomonas putida W619 6113728 YP_001751592.1 CDS rplW NC_010501.1 5228453 5228752 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(5228453..5228752) Pseudomonas putida W619 6113729 YP_001751593.1 CDS rplD NC_010501.1 5228749 5229351 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(5228749..5229351) Pseudomonas putida W619 6113730 YP_001751594.1 CDS rplC NC_010501.1 5229364 5229999 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(5229364..5229999) Pseudomonas putida W619 6113731 YP_001751595.1 CDS rpsJ NC_010501.1 5230080 5230391 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(5230080..5230391) Pseudomonas putida W619 6113732 YP_001751596.1 CDS PputW619_4751 NC_010501.1 5230534 5231727 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5230534..5231727) Pseudomonas putida W619 6113733 YP_001751597.1 CDS PputW619_4752 NC_010501.1 5231755 5233899 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(5231755..5233899) Pseudomonas putida W619 6113734 YP_001751598.1 CDS PputW619_4753 NC_010501.1 5233930 5234400 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(5233930..5234400) Pseudomonas putida W619 6113735 YP_001751599.1 CDS rpsL NC_010501.1 5234507 5234878 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(5234507..5234878) Pseudomonas putida W619 6113736 YP_001751600.1 CDS PputW619_4755 NC_010501.1 5235090 5239289 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(5235090..5239289) Pseudomonas putida W619 6113737 YP_001751601.1 CDS rpoB NC_010501.1 5239354 5243427 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(5239354..5243427) Pseudomonas putida W619 6113738 YP_001751602.1 CDS rplL NC_010501.1 5243647 5244012 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(5243647..5244012) Pseudomonas putida W619 6113739 YP_001751603.1 CDS rplJ NC_010501.1 5244091 5244591 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(5244091..5244591) Pseudomonas putida W619 6113740 YP_001751604.1 CDS rplA NC_010501.1 5244788 5245483 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(5244788..5245483) Pseudomonas putida W619 6113741 YP_001751605.1 CDS rplK NC_010501.1 5245483 5245914 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(5245483..5245914) Pseudomonas putida W619 6113742 YP_001751606.1 CDS nusG NC_010501.1 5246034 5246567 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(5246034..5246567) Pseudomonas putida W619 6113743 YP_001751607.1 CDS secE NC_010501.1 5246577 5246945 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(5246577..5246945) Pseudomonas putida W619 6113744 YP_001751608.1 CDS PputW619_4763 NC_010501.1 5247120 5248313 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(5247120..5248313) Pseudomonas putida W619 6113746 YP_001751609.1 CDS PputW619_4764 NC_010501.1 5248831 5249256 R KEGG: pen:PSEEN0473 hypothetical protein; hypothetical protein complement(5248831..5249256) Pseudomonas putida W619 6113750 YP_001751610.1 CDS PputW619_4765 NC_010501.1 5249264 5250013 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(5249264..5250013) Pseudomonas putida W619 6113751 YP_001751611.1 CDS PputW619_4766 NC_010501.1 5250003 5250968 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(5250003..5250968) Pseudomonas putida W619 6113752 YP_001751612.1 CDS PputW619_4767 NC_010501.1 5256690 5257889 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(5256690..5257889) Pseudomonas putida W619 6113756 YP_001751613.1 CDS PputW619_4768 NC_010501.1 5258107 5259525 D PFAM: peptidase M23B; Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: pen:PSEEN0463 peptidase, M23/M37 family; peptidase M23B 5258107..5259525 Pseudomonas putida W619 6113757 YP_001751614.1 CDS anmK NC_010501.1 5259550 5260620 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 5259550..5260620 Pseudomonas putida W619 6113758 YP_001751615.1 CDS PputW619_4770 NC_010501.1 5260679 5261077 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(5260679..5261077) Pseudomonas putida W619 6113759 YP_001751616.1 CDS argC NC_010501.1 5261176 5262210 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(5261176..5262210) Pseudomonas putida W619 6113760 YP_001751617.1 CDS PputW619_4772 NC_010501.1 5262353 5262778 D PFAM: conserved hypothetical protein; KEGG: pfo:Pfl_5103 hypothetical protein; hypothetical protein 5262353..5262778 Pseudomonas putida W619 6113761 YP_001751618.1 CDS PputW619_4773 NC_010501.1 5262809 5263765 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: pen:PSEEN0458 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 5262809..5263765 Pseudomonas putida W619 6113762 YP_001751619.1 CDS PputW619_4774 NC_010501.1 5263833 5264615 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pen:PSEEN0457 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 5263833..5264615 Pseudomonas putida W619 6113763 YP_001751620.1 CDS PputW619_4775 NC_010501.1 5264681 5265019 D PFAM: histidine triad (HIT) protein; KEGG: psb:Psyr_4573 histidine triad (HIT) protein; histidine triad (HIT) protein 5264681..5265019 Pseudomonas putida W619 6113764 YP_001751621.1 CDS PputW619_4776 NC_010501.1 5265086 5265733 D KEGG: pen:PSEEN0455 ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 5265086..5265733 Pseudomonas putida W619 6113765 YP_001751622.1 CDS PputW619_4777 NC_010501.1 5265744 5266784 D KEGG: pen:PSEEN0454 hypothetical protein; hypothetical protein 5265744..5266784 Pseudomonas putida W619 6113766 YP_001751623.1 CDS PputW619_4778 NC_010501.1 5266819 5267241 R PFAM: OsmC family protein; KEGG: pen:PSEEN0452 hypothetical protein; OsmC family protein complement(5266819..5267241) Pseudomonas putida W619 6113767 YP_001751624.1 CDS PputW619_4779 NC_010501.1 5267433 5268077 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 5267433..5268077 Pseudomonas putida W619 6113768 YP_001751625.1 CDS PputW619_4780 NC_010501.1 5268074 5268778 R KEGG: pen:PSEEN0450 hypothetical protein; hypothetical protein complement(5268074..5268778) Pseudomonas putida W619 6113769 YP_001751626.1 CDS trpC NC_010501.1 5268824 5269657 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(5268824..5269657) Pseudomonas putida W619 6113770 YP_001751627.1 CDS trpD NC_010501.1 5269654 5270703 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(5269654..5270703) Pseudomonas putida W619 6113771 YP_001751628.1 CDS PputW619_4783 NC_010501.1 5270713 5271306 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(5270713..5271306) Pseudomonas putida W619 6113772 YP_001751629.1 CDS PputW619_4784 NC_010501.1 5271680 5273569 D KEGG: pen:PSEEN0445 esterase EstA precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 5271680..5273569 Pseudomonas putida W619 6113773 YP_001751630.1 CDS PputW619_4785 NC_010501.1 5273606 5275087 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(5273606..5275087) Pseudomonas putida W619 6113774 YP_001751631.1 CDS PputW619_4786 NC_010501.1 5275155 5275973 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(5275155..5275973) Pseudomonas putida W619 6113775 YP_001751632.1 CDS PputW619_4787 NC_010501.1 5275970 5276644 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(5275970..5276644) Pseudomonas putida W619 6113776 YP_001751633.1 CDS PputW619_4788 NC_010501.1 5276805 5277632 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0441 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5276805..5277632) Pseudomonas putida W619 6113777 YP_001751634.1 CDS PputW619_4789 NC_010501.1 5277644 5278891 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0440 polyamine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5277644..5278891) Pseudomonas putida W619 6113778 YP_001751635.1 CDS PputW619_4790 NC_010501.1 5278959 5279993 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN0439 polyamine ABC transporter, periplasmic polyamine-binding protein; extracellular solute-binding protein complement(5278959..5279993) Pseudomonas putida W619 6113779 YP_001751636.1 CDS PputW619_4791 NC_010501.1 5280034 5281158 R KEGG: pen:PSEEN0438 polyamine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(5280034..5281158) Pseudomonas putida W619 6113780 YP_001751637.1 CDS PputW619_4792 NC_010501.1 5281370 5281999 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: pen:PSEEN0437 DNA-binding response regulator, LuxR family; two component LuxR family transcriptional regulator complement(5281370..5281999) Pseudomonas putida W619 6113781 YP_001751638.1 CDS PputW619_4793 NC_010501.1 5282010 5284397 R KEGG: pen:PSEEN0436 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; cyclic nucleotide-binding protein complement(5282010..5284397) Pseudomonas putida W619 6113782 YP_001751639.1 CDS PputW619_4794 NC_010501.1 5284493 5285488 D KEGG: pen:PSEEN0435 hypothetical protein; hypothetical protein 5284493..5285488 Pseudomonas putida W619 6113783 YP_001751640.1 CDS PputW619_4795 NC_010501.1 5285566 5286330 R PFAM: heat shock protein DnaJ domain protein; KEGG: pen:PSEEN0434 DnaJ-like co-chaperone; heat shock protein DnaJ domain-containing protein complement(5285566..5286330) Pseudomonas putida W619 6113784 YP_001751641.1 CDS PputW619_4796 NC_010501.1 5286332 5287003 R PFAM: Nucleotidyl transferase; KEGG: pen:PSEEN0433 nucleotidyltransferase; nucleotidyl transferase complement(5286332..5287003) Pseudomonas putida W619 6113785 YP_001751642.1 CDS PputW619_4797 NC_010501.1 5287000 5288019 R PFAM: aminoglycoside phosphotransferase; KEGG: pen:PSEEN0432 phosphotransferase; aminoglycoside phosphotransferase complement(5287000..5288019) Pseudomonas putida W619 6113786 YP_001751643.1 CDS PputW619_4798 NC_010501.1 5288150 5290954 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: pen:PSEEN0431 organic solvent tolerance protein precursor OstA; organic solvent tolerance protein 5288150..5290954 Pseudomonas putida W619 6113787 YP_001751644.1 CDS PputW619_4799 NC_010501.1 5290929 5292254 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pen:PSEEN0430 peptidyl-prolyl cis-trans isomerase A; SurA domain-containing protein 5290929..5292254 Pseudomonas putida W619 6113788 YP_001751645.1 CDS pdxA NC_010501.1 5292251 5293240 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 5292251..5293240 Pseudomonas putida W619 6113789 YP_001751646.1 CDS ksgA NC_010501.1 5293237 5294037 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 5293237..5294037 Pseudomonas putida W619 6113790 YP_001751647.1 CDS apaG NC_010501.1 5294195 5294575 D protein associated with Co2+ and Mg2+ efflux; ApaG protein 5294195..5294575 Pseudomonas putida W619 6113791 YP_001751648.1 CDS apaH NC_010501.1 5294575 5295441 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 5294575..5295441 Pseudomonas putida W619 6113792 YP_001751649.1 CDS glpE NC_010501.1 5295457 5295786 D belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 5295457..5295786 Pseudomonas putida W619 6113793 YP_001751650.1 CDS PputW619_4805 NC_010501.1 5296068 5297990 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: pen:PSEEN0424 serine protein kinase; putative serine protein kinase PrkA 5296068..5297990 Pseudomonas putida W619 6113794 YP_001751651.1 CDS PputW619_4806 NC_010501.1 5298167 5299438 D PFAM: protein of unknown function DUF444; KEGG: pen:PSEEN0423 hypothetical protein; hypothetical protein 5298167..5299438 Pseudomonas putida W619 6113795 YP_001751652.1 CDS PputW619_4807 NC_010501.1 5299435 5301003 D PFAM: SpoVR family protein; KEGG: pen:PSEEN0422 hypothetical protein; SpoVR family protein 5299435..5301003 Pseudomonas putida W619 6113796 YP_001751653.1 CDS cca NC_010501.1 5301062 5302174 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 5301062..5302174 Pseudomonas putida W619 6113797 YP_001751654.1 CDS PputW619_4809 NC_010501.1 5302234 5302743 R TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: pen:PSEEN0420 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(5302234..5302743) Pseudomonas putida W619 6113798 YP_001751655.1 CDS PputW619_4810 NC_010501.1 5302734 5303090 R TIGRFAM: dihydroneopterin aldolase; KEGG: pen:PSEEN0419 dihydroneopterin aldolase; dihydroneopterin aldolase complement(5302734..5303090) Pseudomonas putida W619 6113799 YP_001751656.1 CDS PputW619_4811 NC_010501.1 5303165 5303734 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 5303165..5303734 Pseudomonas putida W619 6113800 YP_001751657.1 CDS PputW619_4812 NC_010501.1 5303751 5304776 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(5303751..5304776) Pseudomonas putida W619 6113801 YP_001751658.1 CDS rpsU NC_010501.1 5304981 5305196 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 5304981..5305196 Pseudomonas putida W619 6113802 YP_001751659.1 CDS dnaG NC_010501.1 5305497 5307479 D synthesizes RNA primers at the replication forks; DNA primase 5305497..5307479 Pseudomonas putida W619 6113803 YP_001751660.1 CDS PputW619_4815 NC_010501.1 5307547 5309397 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 5307547..5309397 Pseudomonas putida W619 6113804 YP_001751661.1 CDS PputW619_4816 NC_010501.1 5309519 5313262 D KEGG: pen:PSEEN0412 sensory box proten ; GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 5309519..5313262 Pseudomonas putida W619 6113805 YP_001751662.1 CDS PputW619_4817 NC_010501.1 5313620 5314759 D PFAM: filamentation induced by cAMP protein Fic; KEGG: pau:PA14_07450 hypothetical protein; filamentation induced by cAMP protein fic 5313620..5314759 Pseudomonas putida W619 6113807 YP_001751663.1 CDS PputW619_4818 NC_010501.1 5314898 5315422 R KEGG: plu:plu2021 hypothetical protein; hypothetical protein complement(5314898..5315422) Pseudomonas putida W619 6113808 YP_001751664.1 CDS PputW619_4819 NC_010501.1 5315562 5316023 D PFAM: regulatory protein AsnC/Lrp family; KEGG: pen:PSEEN0407 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 5315562..5316023 Pseudomonas putida W619 6113809 YP_001751665.1 CDS PputW619_4820 NC_010501.1 5316214 5317896 D PFAM: amine oxidase; KEGG: pen:PSEEN0401 amino oxydase; amine oxidase 5316214..5317896 Pseudomonas putida W619 6113810 YP_001751666.1 CDS PputW619_4821 NC_010501.1 5317911 5318705 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5317911..5318705 Pseudomonas putida W619 6113811 YP_001751667.1 CDS PputW619_4822 NC_010501.1 5318771 5321053 D TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0399 coenzyme PQQ synthesis protein F; coenzyme PQQ biosynthesis protein PqqF 5318771..5321053 Pseudomonas putida W619 6113812 YP_001751668.1 CDS pqqA NC_010501.1 5321223 5321294 D Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA 5321223..5321294 Pseudomonas putida W619 6113813 YP_001751669.1 CDS PputW619_4824 NC_010501.1 5321384 5322295 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 5321384..5322295 Pseudomonas putida W619 6113814 YP_001751670.1 CDS PputW619_4825 NC_010501.1 5322305 5323060 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 5322305..5323060 Pseudomonas putida W619 6113815 YP_001751671.1 CDS PputW619_4826 NC_010501.1 5323057 5323332 D with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 5323057..5323332 Pseudomonas putida W619 6113816 YP_001751672.1 CDS PputW619_4827 NC_010501.1 5323304 5324452 D KEGG: pen:PSEEN0394 coenzyme PQQ synthesis protein E (coenzyme PQQ synthesis protein III); TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 5323304..5324452 Pseudomonas putida W619 6113817 YP_001751673.1 CDS PputW619_4828 NC_010501.1 5324418 5326241 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: pen:PSEEN0393 prolyl oligopeptidase; peptidase S9 prolyl oligopeptidase 5324418..5326241 Pseudomonas putida W619 6113818 YP_001751674.1 CDS PputW619_4829 NC_010501.1 5326273 5326431 R PFAM: protein of unknown function UPF0057; KEGG: pen:PSEEN5109 hypothetical protein; hypothetical protein complement(5326273..5326431) Pseudomonas putida W619 6113819 YP_001751675.1 CDS PputW619_4830 NC_010501.1 5326628 5327908 R PFAM: aminotransferase class-III; KEGG: pen:PSEEN5110 acetylornithine aminotransferase; class III aminotransferase complement(5326628..5327908) Pseudomonas putida W619 6113820 YP_001751676.1 CDS PputW619_4831 NC_010501.1 5328117 5329040 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5111 transcriptional regulator, LysR family; LysR family transcriptional regulator 5328117..5329040 Pseudomonas putida W619 6113821 YP_001751677.1 CDS PputW619_4832 NC_010501.1 5329302 5331080 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN5113 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5329302..5331080) Pseudomonas putida W619 6113822 YP_001751678.1 CDS PputW619_4833 NC_010501.1 5331204 5332487 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN5114 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(5331204..5332487) Pseudomonas putida W619 6113823 YP_001751679.1 CDS PputW619_4834 NC_010501.1 5332699 5334504 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pen:PSEEN5115 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5332699..5334504) Pseudomonas putida W619 6113824 YP_001751680.1 CDS PputW619_4835 NC_010501.1 5334811 5335107 R KEGG: pen:PSEEN5116 hypothetical protein; hypothetical protein complement(5334811..5335107) Pseudomonas putida W619 6113825 YP_001751681.1 CDS bioD NC_010501.1 5335226 5335906 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(5335226..5335906) Pseudomonas putida W619 6113826 YP_001751682.1 CDS PputW619_4837 NC_010501.1 5335917 5336735 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5118 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(5335917..5336735) Pseudomonas putida W619 6113827 YP_001751683.1 CDS PputW619_4838 NC_010501.1 5336728 5337459 R PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN5119 biotin biosynthesis BioH; carboxylesterase complement(5336728..5337459) Pseudomonas putida W619 6113828 YP_001751684.1 CDS PputW619_4839 NC_010501.1 5337452 5338624 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(5337452..5338624) Pseudomonas putida W619 6113829 YP_001751685.1 CDS PputW619_4840 NC_010501.1 5338626 5339684 R KEGG: pen:PSEEN5121 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(5338626..5339684) Pseudomonas putida W619 6113830 YP_001751686.1 CDS PputW619_4841 NC_010501.1 5339774 5340511 D KEGG: pen:PSEEN5122 competence protein ComF; competence protein ComF 5339774..5340511 Pseudomonas putida W619 6113831 YP_001751687.1 CDS PputW619_4842 NC_010501.1 5340538 5341302 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: pen:PSEEN5123 molybdate transport regulator ModE; ModE family transcriptional regulator 5340538..5341302 Pseudomonas putida W619 6113832 YP_001751688.1 CDS PputW619_4843 NC_010501.1 5341374 5342348 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 5341374..5342348 Pseudomonas putida W619 6113833 YP_001751689.1 CDS PputW619_4844 NC_010501.1 5342413 5343300 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: pen:PSEEN5125 RarD protein; transporter DMT superfamily protein 5342413..5343300 Pseudomonas putida W619 6113834 YP_001751690.1 CDS PputW619_4845 NC_010501.1 5343529 5344047 R PFAM: amino acid-binding ACT domain protein; KEGG: pen:PSEEN5126 hypothetical protein; amino acid-binding ACT domain-containing protein complement(5343529..5344047) Pseudomonas putida W619 6113835 YP_001751691.1 CDS PputW619_4846 NC_010501.1 5344503 5346680 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 5344503..5346680 Pseudomonas putida W619 6113836 YP_001751692.1 CDS PputW619_4847 NC_010501.1 5346777 5347220 R PFAM: response regulator receiver; KEGG: pen:PSEEN5128 response regulator; response regulator receiver protein complement(5346777..5347220) Pseudomonas putida W619 6113837 YP_001751693.1 CDS PputW619_4848 NC_010501.1 5347406 5349343 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pen:PSEEN5129 nucleotidyltransferase, CBS domain/cAMP binding; hypothetical protein 5347406..5349343 Pseudomonas putida W619 6113838 YP_001751694.1 CDS PputW619_4849 NC_010501.1 5349340 5350050 D PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pen:PSEEN5130 exonuclease; exonuclease RNase T and DNA polymerase III 5349340..5350050 Pseudomonas putida W619 6113839 YP_001751695.1 CDS PputW619_4850 NC_010501.1 5350214 5350732 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 5350214..5350732 Pseudomonas putida W619 6113840 YP_001751696.1 CDS PputW619_4851 NC_010501.1 5350729 5351685 D PFAM: FecR protein; KEGG: pen:PSEEN5132 FecR-like transmembrane sensor; anti-FecI sigma factor FecR 5350729..5351685 Pseudomonas putida W619 6113841 YP_001751697.1 CDS PputW619_4852 NC_010501.1 5351846 5354278 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pen:PSEEN5134 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 5351846..5354278 Pseudomonas putida W619 6113842 YP_001751698.1 CDS PputW619_4853 NC_010501.1 5354306 5355439 D PFAM: PepSY-associated TM helix domain protein; KEGG: pen:PSEEN5135 hypothetical protein; PepSY-associated TM helix domain-containing protein 5354306..5355439 Pseudomonas putida W619 6113843 YP_001751699.1 CDS PputW619_4854 NC_010501.1 5355436 5355612 D KEGG: pen:PSEEN5136 hypothetical protein; hypothetical protein 5355436..5355612 Pseudomonas putida W619 6113844 YP_001751700.1 CDS PputW619_4855 NC_010501.1 5355679 5358483 D KEGG: psb:Psyr_0413 hypothetical protein; hypothetical protein 5355679..5358483 Pseudomonas putida W619 6113845 YP_001751701.1 CDS PputW619_4856 NC_010501.1 5358444 5359886 R KEGG: pen:PSEEN5137 hypothetical protein; hypothetical protein complement(5358444..5359886) Pseudomonas putida W619 6113846 YP_001751702.1 CDS PputW619_4857 NC_010501.1 5359886 5360638 R PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5138 heptose kinase WapQ; lipopolysaccharide kinase complement(5359886..5360638) Pseudomonas putida W619 6113847 YP_001751703.1 CDS PputW619_4858 NC_010501.1 5360635 5361369 R PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5139 heptose kinase WapP; lipopolysaccharide kinase complement(5360635..5361369) Pseudomonas putida W619 6113848 YP_001751704.1 CDS PputW619_4859 NC_010501.1 5361369 5362175 R PFAM: lipopolysaccharide kinase; KEGG: pen:PSEEN5140 lipopolysaccharide core biosynthesis; kinase for core heptose of lipopolysaccharide; lipopolysaccharide kinase complement(5361369..5362175) Pseudomonas putida W619 6113849 YP_001751705.1 CDS PputW619_4860 NC_010501.1 5362172 5363296 R PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN5141 glucosyltransferase I; glycosyl transferase group 1 protein complement(5362172..5363296) Pseudomonas putida W619 6113850 YP_001751706.1 CDS PputW619_4861 NC_010501.1 5363296 5364354 R TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5142 ADP-heptose; LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I complement(5363296..5364354) Pseudomonas putida W619 6113851 YP_001751707.1 CDS PputW619_4862 NC_010501.1 5364355 5365404 R TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: pen:PSEEN5143 ADP-heptose; LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II complement(5364355..5365404) Pseudomonas putida W619 6113852 YP_001751708.1 CDS PputW619_4863 NC_010501.1 5365578 5368511 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(5365578..5368511) Pseudomonas putida W619 6113853 YP_001751709.1 CDS aceE NC_010501.1 5368895 5371540 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 5368895..5371540 Pseudomonas putida W619 6113854 YP_001751710.1 CDS PputW619_4865 NC_010501.1 5371554 5373197 D KEGG: pen:PSEEN5146 dihydrolipoamide S-acetyltransferase, E2 component of the pyruvate dehydrogenase complex; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 5371554..5373197 Pseudomonas putida W619 6113855 YP_001751711.1 CDS PputW619_4866 NC_010501.1 5373558 5376248 D KEGG: pen:PSEEN5147 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase 5373558..5376248 Pseudomonas putida W619 6113856 YP_001751712.1 CDS PputW619_4867 NC_010501.1 5376416 5377084 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 5376416..5377084 Pseudomonas putida W619 6113857 YP_001751713.1 CDS PputW619_4868 NC_010501.1 5377087 5377710 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN5149 glutathione S-transferase; glutathione S-transferase domain-containing protein 5377087..5377710 Pseudomonas putida W619 6113858 YP_001751714.1 CDS PputW619_4869 NC_010501.1 5377864 5379192 R PFAM: Inner membrane CreD family protein; KEGG: pen:PSEEN5150 tolerance to colicin E2; hypothetical protein complement(5377864..5379192) Pseudomonas putida W619 6113859 YP_001751715.1 CDS PputW619_4870 NC_010501.1 5379301 5380734 R part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC complement(5379301..5380734) Pseudomonas putida W619 6113860 YP_001751716.1 CDS PputW619_4871 NC_010501.1 5380734 5381414 R response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB complement(5380734..5381414) Pseudomonas putida W619 6113861 YP_001751717.1 CDS PputW619_4872 NC_010501.1 5381615 5382115 R PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN5153 hypothetical protein; hypothetical protein complement(5381615..5382115) Pseudomonas putida W619 6113862 YP_001751718.1 CDS PputW619_4873 NC_010501.1 5382298 5383185 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pen:PSEEN5154 acyltransferase; putative acyltransferase 5382298..5383185 Pseudomonas putida W619 6113863 YP_001751719.1 CDS PputW619_4874 NC_010501.1 5383205 5383861 R KEGG: pen:PSEEN5155 hypothetical protein; hypothetical protein complement(5383205..5383861) Pseudomonas putida W619 6113864 YP_001751720.1 CDS PputW619_4875 NC_010501.1 5383965 5384237 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(5383965..5384237) Pseudomonas putida W619 6113865 YP_001751721.1 CDS PputW619_4876 NC_010501.1 5384256 5384504 R hypothetical protein complement(5384256..5384504) Pseudomonas putida W619 6113866 YP_001751722.1 CDS PputW619_4877 NC_010501.1 5384919 5385845 D KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein 5384919..5385845 Pseudomonas putida W619 6113867 YP_001751723.1 CDS PputW619_4878 NC_010501.1 5385893 5386795 D KEGG: pst:PSPTO_5312 hypothetical protein; hypothetical protein 5385893..5386795 Pseudomonas putida W619 6113868 YP_001751724.1 CDS PputW619_4879 NC_010501.1 5386841 5388040 R TIGRFAM: formaldehyde dehydrogenase, glutathione-independent; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5156 formaldehyde dehydrogenase, glutathione-independent; formaldehyde dehydrogenase complement(5386841..5388040) Pseudomonas putida W619 6113869 YP_001751725.1 CDS PputW619_4880 NC_010501.1 5388313 5389170 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(5388313..5389170) Pseudomonas putida W619 6113870 YP_001751726.1 CDS PputW619_4881 NC_010501.1 5389181 5389813 R TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase gamma subunit; KEGG: pen:PSEEN5158 sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma complement(5389181..5389813) Pseudomonas putida W619 6113871 YP_001751727.1 CDS PputW619_4882 NC_010501.1 5389993 5393010 R TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN5159 sarcosine oxidase (alpha subunit) oxidoreductase protein; sarcosine oxidase subunit alpha complement(5389993..5393010) Pseudomonas putida W619 6113872 YP_001751728.1 CDS PputW619_4883 NC_010501.1 5393007 5393342 R TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase delta subunit heterotetrameric; KEGG: pen:PSEEN5160 sarcosine oxidase, delta subunit; sarcosine oxidase subunit delta complement(5393007..5393342) Pseudomonas putida W619 6113873 YP_001751729.1 CDS PputW619_4884 NC_010501.1 5393357 5394607 R TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: pen:PSEEN5161 sarcosine oxidase beta subunit; sarcosine oxidase subunit beta complement(5393357..5394607) Pseudomonas putida W619 6113874 YP_001751730.1 CDS PputW619_4885 NC_010501.1 5394623 5395876 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(5394623..5395876) Pseudomonas putida W619 6113875 YP_001751731.1 CDS PputW619_4886 NC_010501.1 5396201 5397241 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pen:PSEEN5163 low-specificity L-threonine aldolase; threonine aldolase 5396201..5397241 Pseudomonas putida W619 6113876 YP_001751732.1 CDS PputW619_4887 NC_010501.1 5397322 5399259 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5164 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(5397322..5399259) Pseudomonas putida W619 6113877 YP_001751733.1 CDS PputW619_4888 NC_010501.1 5399396 5399698 R PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5165 hypothetical protein; hypothetical protein complement(5399396..5399698) Pseudomonas putida W619 6113878 YP_001751734.1 CDS PputW619_4889 NC_010501.1 5399695 5399925 R KEGG: pen:PSEEN5166 hypothetical protein; hypothetical protein complement(5399695..5399925) Pseudomonas putida W619 6113879 YP_001751735.1 CDS PputW619_4890 NC_010501.1 5400202 5401827 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pen:PSEEN5167 methyl-accepting chemotaxis transducer; methyl-accepting chemotaxis sensory transducer 5400202..5401827 Pseudomonas putida W619 6113880 YP_001751736.1 CDS PputW619_4891 NC_010501.1 5401979 5403151 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pen:PSEEN5168 oxidoreductase, FAD-binding; oxidoreductase FAD-binding subunit complement(5401979..5403151) Pseudomonas putida W619 6113881 YP_001751737.1 CDS PputW619_4892 NC_010501.1 5403376 5404668 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pen:PSEEN5169 iron-sulfur cluster-binding protein, Rieske family; Rieske (2Fe-2S) domain-containing protein 5403376..5404668 Pseudomonas putida W619 6113882 YP_001751738.1 CDS PputW619_4893 NC_010501.1 5404719 5405516 R KEGG: psb:Psyr_4870 hypothetical protein; hypothetical protein complement(5404719..5405516) Pseudomonas putida W619 6113883 YP_001751739.1 CDS PputW619_4894 NC_010501.1 5405910 5406680 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pen:PSEEN5173 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit complement(5405910..5406680) Pseudomonas putida W619 6113884 YP_001751740.1 CDS PputW619_4895 NC_010501.1 5406691 5407923 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pen:PSEEN5174 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(5406691..5407923) Pseudomonas putida W619 6113885 YP_001751741.1 CDS PputW619_4896 NC_010501.1 5407923 5409875 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pen:PSEEN5175 iron-sulfur cluster-binding protein; hypothetical protein complement(5407923..5409875) Pseudomonas putida W619 6113886 YP_001751742.1 CDS PputW619_4897 NC_010501.1 5410084 5412144 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: pen:PSEEN5176 oxidoreductase, FMN-binding; NADH:flavin oxidoreductase complement(5410084..5412144) Pseudomonas putida W619 6113887 YP_001751743.1 CDS PputW619_4898 NC_010501.1 5412160 5412690 R KEGG: pen:PSEEN5177 hypothetical protein; hypothetical protein complement(5412160..5412690) Pseudomonas putida W619 6113888 YP_001751744.1 CDS PputW619_4899 NC_010501.1 5412768 5413745 R PFAM: peptidase M19 renal dipeptidase; KEGG: pen:PSEEN5178 dipeptidase; membrane dipeptidase complement(5412768..5413745) Pseudomonas putida W619 6113889 YP_001751745.1 CDS PputW619_4900 NC_010501.1 5414032 5414448 D PFAM: protein of unknown function DUF1311; KEGG: pen:PSEEN5179 hypothetical protein; hypothetical protein 5414032..5414448 Pseudomonas putida W619 6113890 YP_001751746.1 CDS PputW619_4901 NC_010501.1 5414589 5415281 D KEGG: psb:Psyr_4413 hypothetical protein; hypothetical protein 5414589..5415281 Pseudomonas putida W619 6113891 YP_001751747.1 CDS PputW619_4902 NC_010501.1 5415354 5415971 D hypothetical protein 5415354..5415971 Pseudomonas putida W619 6113892 YP_001751748.1 CDS PputW619_4903 NC_010501.1 5415975 5416922 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5180 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5415975..5416922) Pseudomonas putida W619 6113893 YP_001751749.1 CDS PputW619_4904 NC_010501.1 5417067 5418011 D TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5181 substrate-binding region of ABC-type glycine transport system; choline ABC transporter periplasmic binding protein 5417067..5418011 Pseudomonas putida W619 6113894 YP_001751750.1 CDS PputW619_4905 NC_010501.1 5418178 5419062 D PFAM: protein of unknown function DUF849; KEGG: pen:PSEEN5182 hypothetical protein; hypothetical protein 5418178..5419062 Pseudomonas putida W619 6113895 YP_001751751.1 CDS PputW619_4906 NC_010501.1 5419079 5420044 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 5419079..5420044 Pseudomonas putida W619 6113896 YP_001751752.1 CDS PputW619_4907 NC_010501.1 5420055 5420525 D KEGG: pen:PSEEN5184 hypothetical protein; hypothetical protein 5420055..5420525 Pseudomonas putida W619 6113897 YP_001751753.1 CDS PputW619_4908 NC_010501.1 5420531 5422138 R KEGG: xac:XAC1034 peptidyl-Asp metalloendopeptidase; hypothetical protein complement(5420531..5422138) Pseudomonas putida W619 6113898 YP_001751754.1 CDS PputW619_4909 NC_010501.1 5422484 5422741 D KEGG: pen:PSEEN5185 hypothetical protein; hypothetical protein 5422484..5422741 Pseudomonas putida W619 6113899 YP_001751755.1 CDS PputW619_4910 NC_010501.1 5422872 5423978 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pen:PSEEN5186 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(5422872..5423978) Pseudomonas putida W619 6113900 YP_001751756.1 CDS PputW619_4911 NC_010501.1 5424369 5425745 R KEGG: pen:PSEEN5187 L-serine deaminase I; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(5424369..5425745) Pseudomonas putida W619 6113901 YP_001751757.1 CDS PputW619_4912 NC_010501.1 5426187 5427134 D TIGRFAM: choline ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pen:PSEEN5188 glycine betaine/L-proline ABC transporter, periplasmic binding protein; choline ABC transporter periplasmic binding protein 5426187..5427134 Pseudomonas putida W619 6113902 YP_001751758.1 CDS PputW619_4913 NC_010501.1 5427219 5428064 D TIGRFAM: choline ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5189 glycine betaine/L-proline ABC transporter, permease protein; choline ABC transporter permease 5427219..5428064 Pseudomonas putida W619 6113903 YP_001751759.1 CDS PputW619_4914 NC_010501.1 5428061 5429239 D KEGG: pen:PSEEN5190 glycine betaine/L-proline ABC transporter, ATP-binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; choline ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; choline ABC transporter ATP-binding protein 5428061..5429239 Pseudomonas putida W619 6113904 YP_001751760.1 CDS PputW619_4915 NC_010501.1 5429354 5430124 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(5429354..5430124) Pseudomonas putida W619 6113905 YP_001751761.1 CDS PputW619_4916 NC_010501.1 5430135 5430872 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(5430135..5430872) Pseudomonas putida W619 6113906 YP_001751762.1 CDS PputW619_4917 NC_010501.1 5430985 5431245 R KEGG: pen:PSEEN5193 hypothetical protein; hypothetical protein complement(5430985..5431245) Pseudomonas putida W619 6113907 YP_001751763.1 CDS hisH NC_010501.1 5431246 5431884 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(5431246..5431884) Pseudomonas putida W619 6113908 YP_001751764.1 CDS hisB NC_010501.1 5431885 5432478 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(5431885..5432478) Pseudomonas putida W619 6113909 YP_001751765.1 CDS PputW619_4920 NC_010501.1 5432711 5434369 R PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN5196 permease, MFS superfamily; major facilitator transporter complement(5432711..5434369) Pseudomonas putida W619 6113910 YP_001751766.1 CDS PputW619_4921 NC_010501.1 5434740 5436983 D PFAM: AsmA family protein; KEGG: pen:PSEEN5198 AsmA protein; AsmA family protein 5434740..5436983 Pseudomonas putida W619 6113911 YP_001751767.1 CDS PputW619_4922 NC_010501.1 5436980 5438047 D TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: pen:PSEEN5199 A/G specific adenine glycosylase; A/G-specific adenine glycosylase 5436980..5438047 Pseudomonas putida W619 6113912 YP_001751768.1 CDS PputW619_4923 NC_010501.1 5438044 5438316 D PFAM: Fe(II) trafficking protein YggX; KEGG: pfo:Pfl_0319 hypothetical protein; hypothetical protein 5438044..5438316 Pseudomonas putida W619 6113913 YP_001751769.1 CDS PputW619_4924 NC_010501.1 5438674 5439669 D PFAM: protein of unknown function DUF344; KEGG: pen:PSEEN5203 polyphosphate kinase 2; hypothetical protein 5438674..5439669 Pseudomonas putida W619 6113915 YP_001751770.1 CDS PputW619_4925 NC_010501.1 5439782 5440225 D KEGG: pen:PSEEN5204 hypothetical protein; hypothetical protein 5439782..5440225 Pseudomonas putida W619 6113916 YP_001751771.1 CDS PputW619_4926 NC_010501.1 5440334 5441719 R TIGRFAM: GABA permease; PFAM: Spore germination protein; amino acid permease-associated region; KEGG: pen:PSEEN5205 gamma-aminobutyrate transporter; GABA permease complement(5440334..5441719) Pseudomonas putida W619 6113917 YP_001751772.1 CDS PputW619_4927 NC_010501.1 5442360 5443133 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN5207 amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 5442360..5443133 Pseudomonas putida W619 6113918 YP_001751773.1 CDS PputW619_4928 NC_010501.1 5443145 5443897 D PFAM: extracellular solute-binding protein family 3; KEGG: pfl:PFL_0342 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5443145..5443897 Pseudomonas putida W619 6113919 YP_001751774.1 CDS PputW619_4929 NC_010501.1 5443953 5444648 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5209 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5443953..5444648 Pseudomonas putida W619 6113920 YP_001751775.1 CDS PputW619_4930 NC_010501.1 5444645 5445334 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5210 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5444645..5445334 Pseudomonas putida W619 6113921 YP_001751776.1 CDS PputW619_4931 NC_010501.1 5445420 5446625 D KEGG: pen:PSEEN5211 hypothetical protein; hypothetical protein 5445420..5446625 Pseudomonas putida W619 6113922 YP_001751777.1 CDS PputW619_4932 NC_010501.1 5446910 5447182 R KEGG: pen:PSEEN0939 hypothetical protein; hypothetical protein complement(5446910..5447182) Pseudomonas putida W619 6113923 YP_001751778.1 CDS PputW619_4933 NC_010501.1 5447172 5447453 R hypothetical protein complement(5447172..5447453) Pseudomonas putida W619 6113924 YP_001751779.1 CDS PputW619_4934 NC_010501.1 5447962 5448255 D KEGG: pen:PSEEN5218 hypothetical protein; hypothetical protein 5447962..5448255 Pseudomonas putida W619 6113925 YP_001751780.1 CDS PputW619_4935 NC_010501.1 5448592 5449911 D PFAM: integrase family protein; KEGG: pfo:Pfl_3064 phage integrase; integrase family protein 5448592..5449911 Pseudomonas putida W619 6113927 YP_001751781.1 CDS PputW619_4936 NC_010501.1 5450842 5451822 D KEGG: pfo:Pfl_0746 phage integrase; phage integrase 5450842..5451822 Pseudomonas putida W619 6113928 YP_001751782.1 CDS PputW619_4937 NC_010501.1 5452249 5454717 D KEGG: reh:H16_A3231 hypothetical protein, contains NB-ARC domain; hypothetical protein 5452249..5454717 Pseudomonas putida W619 6113929 YP_001751783.1 CDS PputW619_4938 NC_010501.1 5455115 5455402 R PFAM: helix-turn-helix domain protein; KEGG: spe:Spro_1852 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(5455115..5455402) Pseudomonas putida W619 6113930 YP_001751784.1 CDS PputW619_4939 NC_010501.1 5455718 5457379 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: pen:PSEEN0265 glutamate synthase, large subunit; glutamate synthase 5455718..5457379 Pseudomonas putida W619 6113931 YP_001751785.1 CDS PputW619_4940 NC_010501.1 5457529 5458848 R PFAM: outer membrane porin; KEGG: pen:PSEEN0264 outer membrane protein OprE3; outer membrane porin complement(5457529..5458848) Pseudomonas putida W619 6113932 YP_001751786.1 CDS PputW619_4941 NC_010501.1 5459278 5459475 R KEGG: pfo:Pfl_0292 hypothetical protein; hypothetical protein complement(5459278..5459475) Pseudomonas putida W619 6113933 YP_001751787.1 CDS PputW619_4942 NC_010501.1 5459657 5460763 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(5459657..5460763) Pseudomonas putida W619 6113934 YP_001751788.1 CDS PputW619_4943 NC_010501.1 5460917 5463817 R PFAM: aminoglycoside phosphotransferase; aminotransferase class-III; KEGG: pen:PSEEN0260 aminotransferase, class III; hypothetical protein complement(5460917..5463817) Pseudomonas putida W619 6113935 YP_001751789.1 CDS PputW619_4944 NC_010501.1 5464009 5464551 D KEGG: pen:PSEEN0251 dTDP-4-keto-6-deoxy-D-glucose-3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 5464009..5464551 Pseudomonas putida W619 6113936 YP_001751790.1 CDS PputW619_4945 NC_010501.1 5464548 5465408 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pen:PSEEN0250 dTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase); dTDP-4-dehydrorhamnose reductase 5464548..5465408 Pseudomonas putida W619 6113937 YP_001751791.1 CDS PputW619_4946 NC_010501.1 5465447 5467261 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0249 sensor histidine kinase; histidine kinase 5465447..5467261 Pseudomonas putida W619 6113938 YP_001751792.1 CDS PputW619_4947 NC_010501.1 5467258 5468667 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0248 sigma-54 dependent response regulator; Fis family two component sigma-54 specific transcriptional regulator 5467258..5468667 Pseudomonas putida W619 6113939 YP_001751793.1 CDS PputW619_4948 NC_010501.1 5468664 5469119 D TIGRFAM: thioesterase domain protein; PFAM: Thioesterase putative; KEGG: pen:PSEEN0247 hypothetical protein; thioesterase domain-containing protein 5468664..5469119 Pseudomonas putida W619 6113940 YP_001751794.1 CDS PputW619_4949 NC_010501.1 5469108 5469935 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pen:PSEEN0246 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(5469108..5469935) Pseudomonas putida W619 6113941 YP_001751795.1 CDS nudE NC_010501.1 5469932 5470498 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE complement(5469932..5470498) Pseudomonas putida W619 6113942 YP_001751796.1 CDS PputW619_4951 NC_010501.1 5470563 5471225 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pen:PSEEN0244 hydrolase, haloacid dehalogenase family, subfamily IA, variant 3; HAD family hydrolase 5470563..5471225 Pseudomonas putida W619 6113943 YP_001751797.1 CDS PputW619_4952 NC_010501.1 5471340 5471792 R PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: pen:PSEEN0243 hypothetical protein; LysM domain/BON superfamily protein complement(5471340..5471792) Pseudomonas putida W619 6113944 YP_001751798.1 CDS PputW619_4953 NC_010501.1 5471973 5472803 D TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: pen:PSEEN0241 formate dehydrogenase accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 5471973..5472803 Pseudomonas putida W619 6113945 YP_001751799.1 CDS PputW619_4954 NC_010501.1 5472809 5475154 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pen:PSEEN0240 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 5472809..5475154 Pseudomonas putida W619 6113946 YP_001751800.1 CDS PputW619_4955 NC_010501.1 5475368 5475847 D PFAM: 17 kDa surface antigen; KEGG: pen:PSEEN0239 hypothetical protein; 17 kDa surface antigen 5475368..5475847 Pseudomonas putida W619 6113947 YP_001751801.1 CDS PputW619_4956 NC_010501.1 5475902 5476342 R PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0236 thioesterase; thioesterase superfamily protein complement(5475902..5476342) Pseudomonas putida W619 6113948 YP_001751802.1 CDS PputW619_4957 NC_010501.1 5476465 5476908 D KEGG: plu:plu2211 hypothetical protein; hypothetical protein 5476465..5476908 Pseudomonas putida W619 6113949 YP_001751803.1 CDS PputW619_4958 NC_010501.1 5476908 5477180 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: plu:plu2210 hypothetical protein; addiction module antitoxin 5476908..5477180 Pseudomonas putida W619 6113950 YP_001751804.1 CDS PputW619_4959 NC_010501.1 5477233 5478774 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(5477233..5478774) Pseudomonas putida W619 6113951 YP_001751805.1 CDS hslO NC_010501.1 5478954 5479853 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(5478954..5479853) Pseudomonas putida W619 6113952 YP_001751806.1 CDS PputW619_4961 NC_010501.1 5479973 5480767 D PFAM: phosphoesterase PA-phosphatase related; KEGG: pen:PSEEN0232 hypothetical protein; PA-phosphatase-like phosphoesterase 5479973..5480767 Pseudomonas putida W619 6113953 YP_001751807.1 CDS PputW619_4962 NC_010501.1 5480795 5481196 R PFAM: RNA-binding S4 domain protein; KEGG: pen:PSEEN0231 heat shock protein 15, ribosome associated; RNA-binding S4 domain-containing protein complement(5480795..5481196) Pseudomonas putida W619 6113954 YP_001751808.1 CDS PputW619_4963 NC_010501.1 5481249 5481788 D PFAM: protein of unknown function DUF785; KEGG: pen:PSEEN0230 hypothetical protein; hypothetical protein 5481249..5481788 Pseudomonas putida W619 6113955 YP_001751809.1 CDS PputW619_4964 NC_010501.1 5481785 5482690 D TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: pen:PSEEN0229 ribosomal protein S6 modification protein; alpha-L-glutamate ligase 5481785..5482690 Pseudomonas putida W619 6113956 YP_001751810.1 CDS PputW619_4965 NC_010501.1 5482760 5484073 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pen:PSEEN0228 osmolarity sensor protein EnvZ; integral membrane sensor signal transduction histidine kinase complement(5482760..5484073) Pseudomonas putida W619 6113957 YP_001751811.1 CDS ompR NC_010501.1 5484087 5484827 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(5484087..5484827) Pseudomonas putida W619 6113958 YP_001751812.1 CDS PputW619_4967 NC_010501.1 5485055 5487379 D PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: pen:PSEEN0226 RNA-binding transcription accessory protein; RNA-binding S1 domain-containing protein 5485055..5487379 Pseudomonas putida W619 6113959 YP_001751813.1 CDS PputW619_4968 NC_010501.1 5487379 5487762 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN0225 thioesterase; thioesterase superfamily protein 5487379..5487762 Pseudomonas putida W619 6113960 YP_001751814.1 CDS PputW619_4969 NC_010501.1 5487917 5489494 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 5487917..5489494 Pseudomonas putida W619 6113961 YP_001751815.1 CDS PputW619_4970 NC_010501.1 5489494 5490120 D PFAM: regulatory protein TetR; KEGG: pen:PSEEN0223 transcriptional regulator, TetR family; TetR family transcriptional regulator 5489494..5490120 Pseudomonas putida W619 6113962 YP_001751816.1 CDS PputW619_4971 NC_010501.1 5490243 5490458 R PFAM: TOBE domain protein; KEGG: pen:PSEEN0222 organosulfonate utilization protein SsuF; TOBE domain-containing protein complement(5490243..5490458) Pseudomonas putida W619 6113963 YP_001751817.1 CDS ssuB NC_010501.1 5490503 5491315 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit complement(5490503..5491315) Pseudomonas putida W619 6113964 YP_001751818.1 CDS PputW619_4973 NC_010501.1 5491312 5492109 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0220 sulfonate ABC transporter, permease protein SsuC; binding-protein-dependent transport system inner membrane protein complement(5491312..5492109) Pseudomonas putida W619 6113965 YP_001751819.1 CDS PputW619_4974 NC_010501.1 5492120 5493268 R catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase complement(5492120..5493268) Pseudomonas putida W619 6113966 YP_001751820.1 CDS PputW619_4975 NC_010501.1 5493329 5494294 R KEGG: pen:PSEEN0218 sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonate ABC transporter substrate-binding protein complement(5493329..5494294) Pseudomonas putida W619 6113967 YP_001751821.1 CDS PputW619_4976 NC_010501.1 5494388 5494981 R PFAM: NADPH-dependent FMN reductase; KEGG: pen:PSEEN0217 NAD(P)H-dependent FMN reductase; NAD(P)H-dependent FMN reductase complement(5494388..5494981) Pseudomonas putida W619 6113968 YP_001751822.1 CDS PputW619_4977 NC_010501.1 5495273 5495911 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pen:PSEEN0215 thiol-specific antioxidant protein LsfA; peroxidase complement(5495273..5495911) Pseudomonas putida W619 6113969 YP_001751823.1 CDS PputW619_4978 NC_010501.1 5496076 5497407 R PFAM: outer membrane porin; KEGG: pen:PSEEN0214 outer membrane porin OprE; outer membrane porin complement(5496076..5497407) Pseudomonas putida W619 6113970 YP_001751824.1 CDS PputW619_4979 NC_010501.1 5497907 5498878 D KEGG: pen:PSEEN0213 taurine ABC transporter, periplasmic taurine-binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; taurine ABC transporter periplasmic binding protein 5497907..5498878 Pseudomonas putida W619 6113971 YP_001751825.1 CDS tauB NC_010501.1 5498892 5499680 D Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 5498892..5499680 Pseudomonas putida W619 6113972 YP_001751826.1 CDS PputW619_4981 NC_010501.1 5499677 5500516 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0211 taurine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5499677..5500516 Pseudomonas putida W619 6113973 YP_001751827.1 CDS tauD NC_010501.1 5500569 5501402 D catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 5500569..5501402 Pseudomonas putida W619 6113974 YP_001751828.1 CDS PputW619_4983 NC_010501.1 5501522 5503519 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pen:PSEEN0209 choline/glycine betaine transporter, BCCT family; choline/carnitine/betaine transporter complement(5501522..5503519) Pseudomonas putida W619 6113975 YP_001751829.1 CDS PputW619_4984 NC_010501.1 5503728 5504660 R KEGG: pen:PSEEN0208 serine O-acetyltransferase; Serine O-acetyltransferase complement(5503728..5504660) Pseudomonas putida W619 6113976 YP_001751830.1 CDS PputW619_4985 NC_010501.1 5504930 5505724 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: pen:PSEEN0207 amino acid ABC transporter, periplasmic amino acid-binding protein; cystine transporter subunit 5504930..5505724 Pseudomonas putida W619 6113977 YP_001751831.1 CDS PputW619_4986 NC_010501.1 5505721 5506389 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0206 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5505721..5506389 Pseudomonas putida W619 6113978 YP_001751832.1 CDS PputW619_4987 NC_010501.1 5506392 5507150 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0205 amino acid ABC transporter, ATP-binding protein; putative amino-acid ABC transporter ATP-binding protein YecC 5506392..5507150 Pseudomonas putida W619 6113979 YP_001751833.1 CDS PputW619_4988 NC_010501.1 5507423 5508664 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0203 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 5507423..5508664 Pseudomonas putida W619 6113980 YP_001751834.1 CDS PputW619_4989 NC_010501.1 5508738 5509919 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0202 acyl-CoA dehydrogenase; type 2 acyl-CoA dehydrogenase 5508738..5509919 Pseudomonas putida W619 6113981 YP_001751835.1 CDS PputW619_4990 NC_010501.1 5509919 5511313 D KEGG: pen:PSEEN0201 monooxygenase; monooxygenase 5509919..5511313 Pseudomonas putida W619 6113982 YP_001751836.1 CDS PputW619_4991 NC_010501.1 5511306 5512106 D PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0200 D-methionine-binding periplasmic lipoprotein MetQ; NLPA lipoprotein 5511306..5512106 Pseudomonas putida W619 6113983 YP_001751837.1 CDS PputW619_4992 NC_010501.1 5512108 5513217 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0199 D-methionine ABC transporter MetN, ATP-binding protein; ABC transporter-like protein 5512108..5513217 Pseudomonas putida W619 6113984 YP_001751838.1 CDS PputW619_4993 NC_010501.1 5513207 5513851 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0198 D-methionine ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 5513207..5513851 Pseudomonas putida W619 6113985 YP_001751839.1 CDS PputW619_4994 NC_010501.1 5513876 5515771 R KEGG: pen:PSEEN0197 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(5513876..5515771) Pseudomonas putida W619 6113986 YP_001751840.1 CDS PputW619_4995 NC_010501.1 5515918 5517102 D PFAM: fatty acid desaturase; KEGG: pen:PSEEN0196 fatty acid desaturase; fatty acid desaturase 5515918..5517102 Pseudomonas putida W619 6113987 YP_001751841.1 CDS PputW619_4996 NC_010501.1 5517244 5518230 D KEGG: pen:PSEEN0195 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 5517244..5518230 Pseudomonas putida W619 6113988 YP_001751842.1 CDS PputW619_4997 NC_010501.1 5518263 5519525 R PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: pen:PSEEN0192 response regulator; putative signal transduction protein complement(5518263..5519525) Pseudomonas putida W619 6113989 YP_001751843.1 CDS PputW619_4998 NC_010501.1 5519663 5520940 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(5519663..5520940) Pseudomonas putida W619 6113990 YP_001751844.1 CDS gabD NC_010501.1 5521119 5522561 R catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I complement(5521119..5522561) Pseudomonas putida W619 6113991 YP_001751845.1 CDS PputW619_5000 NC_010501.1 5522825 5524501 R PFAM: Arylsulfotransferase; KEGG: pen:PSEEN0187 arylsulfotransferase; arylsulfotransferase complement(5522825..5524501) Pseudomonas putida W619 6113992 YP_001751846.1 CDS PputW619_5001 NC_010501.1 5524519 5526855 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pen:PSEEN0186 TonB-dependent receptor; TonB-dependent receptor complement(5524519..5526855) Pseudomonas putida W619 6113993 YP_001751847.1 CDS PputW619_5002 NC_010501.1 5527047 5527961 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0184 transcritpional regulator, LysR family; LysR family transcriptional regulator 5527047..5527961 Pseudomonas putida W619 6113994 YP_001751848.1 CDS PputW619_5003 NC_010501.1 5528009 5528914 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0183 alkylsulfatase AtsK; taurine dioxygenase complement(5528009..5528914) Pseudomonas putida W619 6113995 YP_001751849.1 CDS PputW619_5004 NC_010501.1 5528952 5529995 R PFAM: NMT1/THI5 like domain protein; KEGG: pen:PSEEN0182 aryl sulfate ester ABC transporter AstR, periplasmic binding protein; NMT1/THI5-like domain-containing protein complement(5528952..5529995) Pseudomonas putida W619 6113996 YP_001751850.1 CDS PputW619_5005 NC_010501.1 5530294 5531880 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0181 alkyl sulfate ester ABC transporter AstB, permease protein; binding-protein-dependent transport system inner membrane protein 5530294..5531880 Pseudomonas putida W619 6113997 YP_001751851.1 CDS PputW619_5006 NC_010501.1 5531877 5532740 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0180 alkyl sulfate ester ABC transporter AstC, ATP-binding protein; ABC transporter-like protein 5531877..5532740 Pseudomonas putida W619 6113998 YP_001751852.1 CDS PputW619_5007 NC_010501.1 5532746 5533045 R KEGG: pen:PSEEN0178 hypothetical protein; hypothetical protein complement(5532746..5533045) Pseudomonas putida W619 6113999 YP_001751853.1 CDS PputW619_5008 NC_010501.1 5533045 5534010 R PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: pen:PSEEN0177 hypothetical protein; HEAT repeat-containing PBS lyase complement(5533045..5534010) Pseudomonas putida W619 6114000 YP_001751854.1 CDS PputW619_5009 NC_010501.1 5534007 5534864 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA2294 putative sulfonate transport system ATP-binding protein; ABC transporter-like protein complement(5534007..5534864) Pseudomonas putida W619 6114001 YP_001751855.1 CDS PputW619_5010 NC_010501.1 5534864 5535646 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3160 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(5534864..5535646) Pseudomonas putida W619 6114002 YP_001751856.1 CDS PputW619_5011 NC_010501.1 5535662 5537068 R KEGG: pae:PA2296 putative sulfonate transport system substrate-binding protein; putative sulfonate transport system substrate-binding protein complement(5535662..5537068) Pseudomonas putida W619 6114003 YP_001751857.1 CDS PputW619_5012 NC_010501.1 5537188 5537433 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pen:PSEEN0176 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(5537188..5537433) Pseudomonas putida W619 6114004 YP_001751858.1 CDS PputW619_5013 NC_010501.1 5537503 5539227 R PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN0175 succinate dehydrogenase (fumarate reductase); putative oxidoreductase complement(5537503..5539227) Pseudomonas putida W619 6114005 YP_001751859.1 CDS PputW619_5014 NC_010501.1 5539224 5539973 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN0174 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(5539224..5539973) Pseudomonas putida W619 6114006 YP_001751860.1 CDS PputW619_5015 NC_010501.1 5540224 5541909 D PFAM: type II secretion system protein E; KEGG: pen:PSEEN5305 type II secretion system protein E; type II secretion system protein E 5540224..5541909 Pseudomonas putida W619 6114007 YP_001751861.1 CDS PputW619_5016 NC_010501.1 5541999 5542313 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN5306 hypothetical protein; hypothetical protein 5541999..5542313 Pseudomonas putida W619 6114008 YP_001751862.1 CDS PputW619_5017 NC_010501.1 5542348 5545221 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(5542348..5545221) Pseudomonas putida W619 6114009 YP_001751863.1 CDS PputW619_5018 NC_010501.1 5545353 5545736 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(5545353..5545736) Pseudomonas putida W619 6114010 YP_001751864.1 CDS gcvT NC_010501.1 5545784 5546866 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(5545784..5546866) Pseudomonas putida W619 6114011 YP_001751865.1 CDS PputW619_5020 NC_010501.1 5546990 5548660 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN5310 iron ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5546990..5548660) Pseudomonas putida W619 6114012 YP_001751866.1 CDS PputW619_5021 NC_010501.1 5548776 5549777 R PFAM: extracellular solute-binding protein family 1; KEGG: pen:PSEEN5311 iron ABC transporter, periplasmic iron-binding protein; extracellular solute-binding protein complement(5548776..5549777) Pseudomonas putida W619 6114013 YP_001751867.1 CDS PputW619_5022 NC_010501.1 5549934 5551157 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(5549934..5551157) Pseudomonas putida W619 6114014 YP_001751868.1 CDS PputW619_5023 NC_010501.1 5551161 5551643 R KEGG: pen:PSEEN5313 hypothetical protein; hypothetical protein complement(5551161..5551643) Pseudomonas putida W619 6114015 YP_001751869.1 CDS PputW619_5024 NC_010501.1 5551640 5552839 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(5551640..5552839) Pseudomonas putida W619 6114016 YP_001751870.1 CDS PputW619_5025 NC_010501.1 5552836 5554170 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pen:PSEEN5315 aminopeptidase P; peptidase M24 complement(5552836..5554170) Pseudomonas putida W619 6114017 YP_001751871.1 CDS PputW619_5026 NC_010501.1 5554193 5554747 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(5554193..5554747) Pseudomonas putida W619 6114018 YP_001751872.1 CDS PputW619_5027 NC_010501.1 5554894 5555112 D KEGG: pen:PSEEN5317 hypothetical protein; hypothetical protein 5554894..5555112 Pseudomonas putida W619 6114019 YP_001751873.1 CDS PputW619_5028 NC_010501.1 5555109 5555429 D PFAM: protein of unknown function DUF710; KEGG: pen:PSEEN5318 hypothetical protein; hypothetical protein 5555109..5555429 Pseudomonas putida W619 6114020 YP_001751874.1 CDS PputW619_5029 NC_010501.1 5555696 5556304 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pen:PSEEN5319 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 5555696..5556304 Pseudomonas putida W619 6114022 YP_001751875.1 CDS PputW619_5030 NC_010501.1 5556324 5556473 R KEGG: pen:PSEEN5320 hypothetical protein; hypothetical protein complement(5556324..5556473) Pseudomonas putida W619 6114023 YP_001751876.1 CDS PputW619_5031 NC_010501.1 5556652 5557104 D PFAM: protein of unknown function DUF55; KEGG: pen:PSEEN5321 hypothetical protein; hypothetical protein 5556652..5557104 Pseudomonas putida W619 6114024 YP_001751877.1 CDS PputW619_5032 NC_010501.1 5557138 5557542 R PFAM: flagellar basal body-associated protein FliL; KEGG: pen:PSEEN5325 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein complement(5557138..5557542) Pseudomonas putida W619 6114025 YP_001751878.1 CDS PputW619_5033 NC_010501.1 5557699 5558676 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 5557699..5558676 Pseudomonas putida W619 6114026 YP_001751879.1 CDS PputW619_5034 NC_010501.1 5558747 5559397 R PFAM: ChaC family protein; KEGG: pen:PSEEN5327 transporter, ChaC-related; ChaC family protein complement(5558747..5559397) Pseudomonas putida W619 6114027 YP_001751880.1 CDS PputW619_5035 NC_010501.1 5559643 5560611 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(5559643..5560611) Pseudomonas putida W619 6114028 YP_001751881.1 CDS PputW619_5036 NC_010501.1 5560611 5562077 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: pen:PSEEN5330 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase complement(5560611..5562077) Pseudomonas putida W619 6114029 YP_001751882.1 CDS rho NC_010501.1 5562282 5563541 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(5562282..5563541) Pseudomonas putida W619 6114030 YP_001751883.1 CDS PputW619_5038 NC_010501.1 5563770 5564099 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pst:PSPTO_5243 thioredoxin; thioredoxin complement(5563770..5564099) Pseudomonas putida W619 6114031 YP_001751884.1 CDS PputW619_5039 NC_010501.1 5564343 5565845 D PFAM: Ppx/GppA phosphatase; KEGG: pen:PSEEN5335 exopolyphosphatase (ExopolyPase) (metaphosphatase); Ppx/GppA phosphatase 5564343..5565845 Pseudomonas putida W619 6114032 YP_001751885.1 CDS PputW619_5040 NC_010501.1 5565832 5568072 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(5565832..5568072) Pseudomonas putida W619 6114033 YP_001751886.1 CDS PputW619_5041 NC_010501.1 5568288 5568932 D KEGG: pen:PSEEN5338 hypothetical protein; hypothetical protein 5568288..5568932 Pseudomonas putida W619 6114034 YP_001751887.1 CDS PputW619_5042 NC_010501.1 5568765 5570060 R PFAM: fatty acid hydroxylase; KEGG: pen:PSEEN5339 hypothetical protein; fatty acid hydroxylase complement(5568765..5570060) Pseudomonas putida W619 6114035 YP_001751888.1 CDS PputW619_5043 NC_010501.1 5570174 5570839 D PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN5340 enhancing lycopene biosynthesis protein 2; isoprenoid biosynthesis protein with amidotransferase-like domain 5570174..5570839 Pseudomonas putida W619 6114036 YP_001751889.1 CDS PputW619_5044 NC_010501.1 5570840 5571292 R PFAM: protein of unknown function DUF188; KEGG: pen:PSEEN5341 hypothetical protein; hypothetical protein complement(5570840..5571292) Pseudomonas putida W619 6114037 YP_001751890.1 CDS PputW619_5045 NC_010501.1 5571464 5571712 R KEGG: pen:PSEEN5347 hypothetical protein; hypothetical protein complement(5571464..5571712) Pseudomonas putida W619 6114038 YP_001751891.1 CDS PputW619_5046 NC_010501.1 5571709 5571972 R KEGG: pen:PSEEN5348 hypothetical protein; hypothetical protein complement(5571709..5571972) Pseudomonas putida W619 6114039 YP_001751892.1 CDS PputW619_5047 NC_010501.1 5572497 5572952 D PFAM: protein of unknown function DUF1568; KEGG: pen:PSEEN4846 hypothetical protein; hypothetical protein 5572497..5572952 Pseudomonas putida W619 6114040 YP_001751893.1 CDS PputW619_5048 NC_010501.1 5573000 5574418 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0156 efflux transporter, outer membrane protein; RND efflux system outer membrane lipoprotein complement(5573000..5574418) Pseudomonas putida W619 6114041 YP_001751894.1 CDS PputW619_5049 NC_010501.1 5574415 5575290 R PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0155 efflux transporter, membrane fusion protein; secretion protein HlyD family protein complement(5574415..5575290) Pseudomonas putida W619 6114042 YP_001751895.1 CDS PputW619_5050 NC_010501.1 5575287 5575499 R PFAM: protein of unknown function DUF1656; KEGG: pen:PSEEN0154 hypothetical protein; hypothetical protein complement(5575287..5575499) Pseudomonas putida W619 6114043 YP_001751896.1 CDS PputW619_5051 NC_010501.1 5575496 5577583 R PFAM: Fusaric acid resistance protein conserved region; KEGG: pen:PSEEN0153 efflux transporter, permease protein; fusaric acid resistance protein region complement(5575496..5577583) Pseudomonas putida W619 6114044 YP_001751897.1 CDS PputW619_5052 NC_010501.1 5577580 5578032 R PFAM: regulatory protein MarR; KEGG: pen:PSEEN0152 transcriptional activator, MarR family; MarR family transcriptional regulator complement(5577580..5578032) Pseudomonas putida W619 6114045 YP_001751898.1 CDS PputW619_5053 NC_010501.1 5578133 5578930 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN0151 hypothetical protein; Sel1 domain-containing protein complement(5578133..5578930) Pseudomonas putida W619 6114046 YP_001751899.1 CDS PputW619_5054 NC_010501.1 5579137 5579694 D KEGG: pen:PSEEN0150 transcriptional factor-related protein; transcriptional factor-like protein 5579137..5579694 Pseudomonas putida W619 6114047 YP_001751900.1 CDS PputW619_5055 NC_010501.1 5579709 5580572 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0149 ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(5579709..5580572) Pseudomonas putida W619 6114048 YP_001751901.1 CDS PputW619_5056 NC_010501.1 5580587 5581450 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0148 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(5580587..5581450) Pseudomonas putida W619 6114049 YP_001751902.1 CDS PputW619_5057 NC_010501.1 5581457 5582476 R KEGG: pen:PSEEN0147 ABC transporter, periplasmic binding protein; ABC transporter substrate-binding protein complement(5581457..5582476) Pseudomonas putida W619 6114050 YP_001751903.1 CDS PputW619_5058 NC_010501.1 5582494 5583393 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN0146 taurine catabolic dioxygenase; taurine dioxygenase complement(5582494..5583393) Pseudomonas putida W619 6114051 YP_001751904.1 CDS PputW619_5059 NC_010501.1 5583611 5584012 R KEGG: pen:PSEEN0140 hypothetical protein; hypothetical protein complement(5583611..5584012) Pseudomonas putida W619 6114052 YP_001751905.1 CDS PputW619_5060 NC_010501.1 5584109 5601997 R PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Na-Ca exchanger/integrin-beta4; KEGG: pfo:Pfl_0133 von Willebrand factor, type A; Na-Ca exchanger/integrin-beta4 complement(5584109..5601997) Pseudomonas putida W619 6114053 YP_001751906.1 CDS PputW619_5061 NC_010501.1 5602348 5603685 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0143 type I toxin efflux outer membrane protein TolC; TolC family type I secretion outer membrane protein 5602348..5603685 Pseudomonas putida W619 6114054 YP_001751907.1 CDS PputW619_5062 NC_010501.1 5603730 5605886 D KEGG: pen:PSEEN0144 type I toxin efflux ATP-binding protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 5603730..5605886 Pseudomonas putida W619 6114055 YP_001751908.1 CDS PputW619_5063 NC_010501.1 5605876 5607252 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN0145 type I toxin efflux membrane fusion protein; HlyD family type I secretion membrane fusion protein 5605876..5607252 Pseudomonas putida W619 6114056 YP_001751909.1 CDS PputW619_5064 NC_010501.1 5607311 5609257 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: pen:PSEEN0139 signal transduction protein; GGDEF/EAL domain; diguanylate cyclase/phosphodiesterase complement(5607311..5609257) Pseudomonas putida W619 6114057 YP_001751910.1 CDS PputW619_5065 NC_010501.1 5609268 5610023 R KEGG: pen:PSEEN0138 hypothetical protein; hypothetical protein complement(5609268..5610023) Pseudomonas putida W619 6114058 YP_001751911.1 CDS PputW619_5066 NC_010501.1 5610235 5610933 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pen:PSEEN0137 transcriptional regulator, GntR family; GntR family transcriptional regulator 5610235..5610933 Pseudomonas putida W619 6114059 YP_001751912.1 CDS PputW619_5067 NC_010501.1 5622370 5623590 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pen:PSEEN0121 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(5622370..5623590) Pseudomonas putida W619 6114069 YP_001751913.1 CDS PputW619_5068 NC_010501.1 5623605 5624786 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pen:PSEEN0120 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(5623605..5624786) Pseudomonas putida W619 6114070 YP_001751914.1 CDS PputW619_5069 NC_010501.1 5624949 5625857 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN0118 transcriptional regulator, LysR family; LysR family transcriptional regulator 5624949..5625857 Pseudomonas putida W619 6114071 YP_001751915.1 CDS PputW619_5070 NC_010501.1 5626269 5627390 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pen:PSEEN0116 proton-translocating NAD(P) transhydrogenase; NAD(P)(+) transhydrogenase 5626269..5627390 Pseudomonas putida W619 6114072 YP_001751916.1 CDS PputW619_5071 NC_010501.1 5627402 5627716 D KEGG: pen:PSEEN0115 pyridine proton-translocating NAD(P) transhydrogenase; pyridine proton-translocating NAD(P) transhydrogenase 5627402..5627716 Pseudomonas putida W619 6114073 YP_001751917.1 CDS PputW619_5072 NC_010501.1 5627725 5629155 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: pen:PSEEN0114 pyridine nucleotide transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 5627725..5629155 Pseudomonas putida W619 6114074 YP_001751918.1 CDS PputW619_5073 NC_010501.1 5629344 5630837 D KEGG: pen:PSEEN0113 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 5629344..5630837 Pseudomonas putida W619 6114075 YP_001751919.1 CDS PputW619_5074 NC_010501.1 5631213 5631428 D KEGG: pen:PSEEN0112 hypothetical protein; hypothetical protein 5631213..5631428 Pseudomonas putida W619 6114076 YP_001751920.1 CDS PputW619_5075 NC_010501.1 5631746 5632063 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0111 hypothetical protein; hypothetical protein 5631746..5632063 Pseudomonas putida W619 6114077 YP_001751921.1 CDS PputW619_5076 NC_010501.1 5632147 5632491 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0110 hypothetical protein; hypothetical protein 5632147..5632491 Pseudomonas putida W619 6114078 YP_001751922.1 CDS PputW619_5077 NC_010501.1 5632476 5632796 D TIGRFAM: conserverd hypothetical protein; PFAM: conserved hypothetical protein; KEGG: pen:PSEEN0108 hypothetical protein; hypothetical protein 5632476..5632796 Pseudomonas putida W619 6114079 YP_001751923.1 CDS PputW619_5078 NC_010501.1 5632793 5634751 D KEGG: pen:PSEEN0107 hypothetical protein; hypothetical protein 5632793..5634751 Pseudomonas putida W619 6114080 YP_001751924.1 CDS PputW619_5079 NC_010501.1 5634812 5635213 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pen:PSEEN0106 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(5634812..5635213) Pseudomonas putida W619 6114081 YP_001751925.1 CDS PputW619_5080 NC_010501.1 5635480 5636787 D TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pen:PSEEN0104 citrate transporter; CitMHS family citrate/H+ symporter 5635480..5636787 Pseudomonas putida W619 6114082 YP_001751926.1 CDS PputW619_5081 NC_010501.1 5636861 5637631 D PFAM: Integral membrane protein TerC; KEGG: pen:PSEEN0103 efflux transporter, TerC family; integral membrane protein TerC 5636861..5637631 Pseudomonas putida W619 6114083 YP_001751927.1 CDS PputW619_5082 NC_010501.1 5637860 5639518 D TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pen:PSEEN0101 Na+/Pi cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 5637860..5639518 Pseudomonas putida W619 6114084 YP_001751928.1 CDS PputW619_5083 NC_010501.1 5639549 5640955 D PFAM: peptidase M16 domain protein; KEGG: pen:PSEEN0100 metalloprotease, M16 family; peptidase M16 domain-containing protein 5639549..5640955 Pseudomonas putida W619 6114085 YP_001751929.1 CDS PputW619_5084 NC_010501.1 5641046 5642068 D KEGG: pen:PSEEN0099 hypothetical protein; hypothetical protein 5641046..5642068 Pseudomonas putida W619 6114086 YP_001751930.1 CDS PputW619_5085 NC_010501.1 5642192 5643325 D PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein; hypothetical protein 5642192..5643325 Pseudomonas putida W619 6114087 YP_001751931.1 CDS PputW619_5086 NC_010501.1 5643322 5644113 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0097 ABC transporter, ATP-binding protein; ABC transporter-like protein 5643322..5644113 Pseudomonas putida W619 6114088 YP_001751932.1 CDS PputW619_5087 NC_010501.1 5644117 5645055 D PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein; hypothetical protein 5644117..5645055 Pseudomonas putida W619 6114089 YP_001751933.1 CDS PputW619_5088 NC_010501.1 5645052 5645675 D PFAM: protein of unknown function DUF330; KEGG: pen:PSEEN0095 lipoprotein; hypothetical protein 5645052..5645675 Pseudomonas putida W619 6114090 YP_001751934.1 CDS PputW619_5089 NC_010501.1 5645657 5646886 R PFAM: nucleoside recognition domain protein; KEGG: pen:PSEEN0094 hypothetical protein; nucleoside recognition domain-containing protein complement(5645657..5646886) Pseudomonas putida W619 6114091 YP_001751935.1 CDS gltP NC_010501.1 5647039 5648367 R carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter complement(5647039..5648367) Pseudomonas putida W619 6114092 YP_001751936.1 CDS PputW619_5091 NC_010501.1 5649103 5649573 R PFAM: Inhibitor of vertebrate lysozyme; KEGG: pen:PSEEN0091 hypothetical protein; inhibitor of vertebrate lysozyme complement(5649103..5649573) Pseudomonas putida W619 6114093 YP_001751937.1 CDS PputW619_5092 NC_010501.1 5649576 5649737 R PFAM: protein of unknown function DUF1328; KEGG: pen:PSEEN0090 hypothetical protein; hypothetical protein complement(5649576..5649737) Pseudomonas putida W619 6114094 YP_001751938.1 CDS PputW619_5093 NC_010501.1 5649795 5650079 R KEGG: pen:PSEEN0089 hypothetical protein; hypothetical protein complement(5649795..5650079) Pseudomonas putida W619 6114095 YP_001751939.1 CDS PputW619_5094 NC_010501.1 5650257 5651078 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: psp:PSPPH_0251 osmotically inducible protein, putative; transport-associated complement(5650257..5651078) Pseudomonas putida W619 6114096 YP_001751940.1 CDS PputW619_5095 NC_010501.1 5651289 5652635 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pen:PSEEN0087 alginate biosynthesis response regulator AlgB; Fis family two component sigma-54 specific transcriptional regulator 5651289..5652635 Pseudomonas putida W619 6114097 YP_001751941.1 CDS PputW619_5096 NC_010501.1 5652632 5654410 D KEGG: pen:PSEEN0086 alginate biosynthesis sensor protein KinB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 5652632..5654410 Pseudomonas putida W619 6114098 YP_001751942.1 CDS PputW619_5097 NC_010501.1 5654468 5656096 R PFAM: EAL domain protein; KEGG: pen:PSEEN0085 signal transduction protein; EAL domain protein; EAL domain-containing protein complement(5654468..5656096) Pseudomonas putida W619 6114099 YP_001751943.1 CDS PputW619_5098 NC_010501.1 5656175 5656990 R PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: pen:PSEEN0084 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(5656175..5656990) Pseudomonas putida W619 6114100 YP_001751944.1 CDS PputW619_5099 NC_010501.1 5657017 5658978 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pen:PSEEN0083 diguanylate cyclase (GGDEF domain protein); diguanylate cyclase complement(5657017..5658978) Pseudomonas putida W619 6114101 YP_001751945.1 CDS PputW619_5100 NC_010501.1 5659076 5659930 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pen:PSEEN0082 DNAse I-like hydrolase; endonuclease/exonuclease/phosphatase complement(5659076..5659930) Pseudomonas putida W619 6114102 YP_001751946.1 CDS PputW619_5101 NC_010501.1 5659942 5660577 R PFAM: DSBA oxidoreductase; KEGG: pen:PSEEN0081 thiol:disulfide interchange protein, periplasmic, alkali-inducible; DSBA oxidoreductase complement(5659942..5660577) Pseudomonas putida W619 6114103 YP_001751947.1 CDS PputW619_5102 NC_010501.1 5660747 5661364 R PFAM: cytochrome c class I; KEGG: pen:PSEEN0080 cytochrome c4; cytochrome c class I complement(5660747..5661364) Pseudomonas putida W619 6114104 YP_001751948.1 CDS PputW619_5103 NC_010501.1 5661396 5661698 R KEGG: pen:PSEEN0079 cytochrome c-type protein; cytochrome c-type protein complement(5661396..5661698) Pseudomonas putida W619 6114105 YP_001751949.1 CDS engB NC_010501.1 5661892 5662524 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 5661892..5662524 Pseudomonas putida W619 6114106 YP_001751950.1 CDS PputW619_5105 NC_010501.1 5662893 5665640 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(5662893..5665640) Pseudomonas putida W619 6114107 YP_001751951.1 CDS PputW619_5106 NC_010501.1 5665715 5666002 D KEGG: pen:PSEEN0075 hypothetical protein; hypothetical protein 5665715..5666002 Pseudomonas putida W619 6114108 YP_001751952.1 CDS PputW619_5107 NC_010501.1 5666072 5667022 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 5666072..5667022 Pseudomonas putida W619 6114109 YP_001751953.1 CDS PputW619_5108 NC_010501.1 5667174 5668082 R PFAM: periplasmic solute binding protein; KEGG: pen:PSEEN0073 zinc ABC transporter ZnuA, periplasmic binding protein; periplasmic solute binding protein complement(5667174..5668082) Pseudomonas putida W619 6114110 YP_001751954.1 CDS PputW619_5109 NC_010501.1 5668149 5668634 D KEGG: pen:PSEEN0072 transcriptional repressor of Zn transport system Zur; ferric uptake regulator family protein 5668149..5668634 Pseudomonas putida W619 6114111 YP_001751955.1 CDS PputW619_5110 NC_010501.1 5668631 5669404 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pen:PSEEN0071 zinc ABC transporter, ATP-binding protein; ABC transporter-like protein 5668631..5669404 Pseudomonas putida W619 6114112 YP_001751956.1 CDS PputW619_5111 NC_010501.1 5669397 5670179 D PFAM: ABC-3 protein; KEGG: pen:PSEEN0070 zinc ABC transporter, permease protein; ABC-3 protein 5669397..5670179 Pseudomonas putida W619 6114113 YP_001751957.1 CDS PputW619_5112 NC_010501.1 5670307 5671014 D KEGG: pen:PSEEN0069 lipoprotein; lipoprotein 5670307..5671014 Pseudomonas putida W619 6114114 YP_001751958.1 CDS katE NC_010501.1 5671067 5673211 R Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II complement(5671067..5673211) Pseudomonas putida W619 6114115 YP_001751959.1 CDS metN NC_010501.1 5673438 5674445 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 5673438..5674445 Pseudomonas putida W619 6114116 YP_001751960.1 CDS PputW619_5115 NC_010501.1 5674445 5675116 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pen:PSEEN0067 D-methionine ABC transporter MetI, membrane protein; binding-protein-dependent transport system inner membrane protein 5674445..5675116 Pseudomonas putida W619 6114117 YP_001751961.1 CDS PputW619_5116 NC_010501.1 5675181 5675951 D PFAM: NLPA lipoprotein; KEGG: pen:PSEEN0066 D-methionine-binding lipoprotein MetQ; NLPA lipoprotein 5675181..5675951 Pseudomonas putida W619 6114118 YP_001751962.1 CDS PputW619_5117 NC_010501.1 5676048 5677574 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: pen:PSEEN5491 transcriptional regulator, GntR family; transcriptional regulator complement(5676048..5677574) Pseudomonas putida W619 6114119 YP_001751963.1 CDS PputW619_5118 NC_010501.1 5677664 5678293 D PFAM: Negative transcriptional regulator; KEGG: pen:PSEEN5492 transcriptional regulator; FMN-binding negative transcriptional regulator 5677664..5678293 Pseudomonas putida W619 6114120 YP_001751964.1 CDS PputW619_5119 NC_010501.1 5678306 5678752 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5493 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5678306..5678752 Pseudomonas putida W619 6114121 YP_001751965.1 CDS PputW619_5120 NC_010501.1 5678767 5679441 D PFAM: GCN5-related N-acetyltransferase; KEGG: pen:PSEEN5494 acetyltransferase, GNAT family; N-acetyltransferase GCN5 5678767..5679441 Pseudomonas putida W619 6114122 YP_001751966.1 CDS PputW619_5121 NC_010501.1 5679445 5680344 R PFAM: homocysteine S-methyltransferase; KEGG: psb:Psyr_0975 homocysteine S-methyltransferase; homocysteine S-methyltransferase complement(5679445..5680344) Pseudomonas putida W619 6114123 YP_001751967.1 CDS PputW619_5122 NC_010501.1 5680451 5681272 D PFAM: extracellular solute-binding protein family 3; KEGG: psp:PSPPH_1023 amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular solute-binding protein 5680451..5681272 Pseudomonas putida W619 6114124 YP_001751968.1 CDS PputW619_5123 NC_010501.1 5681269 5682090 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_1022 amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 5681269..5682090 Pseudomonas putida W619 6114125 YP_001751969.1 CDS PputW619_5124 NC_010501.1 5682234 5684042 R catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B complement(5682234..5684042) Pseudomonas putida W619 6114126 YP_001751970.1 CDS PputW619_5125 NC_010501.1 5684141 5685556 R biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A complement(5684141..5685556) Pseudomonas putida W619 6114127 YP_001751971.1 CDS PputW619_5126 NC_010501.1 5685747 5686709 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN5497 transcriptional regulator, LysR family; LysR family transcriptional regulator 5685747..5686709 Pseudomonas putida W619 6114128 YP_001751972.1 CDS PputW619_5127 NC_010501.1 5686983 5687849 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pen:PSEEN5499 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(5686983..5687849) Pseudomonas putida W619 6114129 YP_001751973.1 CDS PputW619_5128 NC_010501.1 5687953 5689395 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 5687953..5689395 Pseudomonas putida W619 6114130 YP_001751974.1 CDS PputW619_5129 NC_010501.1 5689435 5689800 D hypothetical protein 5689435..5689800 Pseudomonas putida W619 6114131 YP_001751975.1 CDS uvrD NC_010501.1 5689936 5692125 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 5689936..5692125 Pseudomonas putida W619 6114132 YP_001751976.1 CDS PputW619_5131 NC_010501.1 5692246 5693100 D PFAM: import inner membrane translocase subunit Tim44; KEGG: pen:PSEEN5505 hypothetical protein; import inner membrane translocase subunit Tim44 5692246..5693100 Pseudomonas putida W619 6114133 YP_001751977.1 CDS PputW619_5132 NC_010501.1 5693215 5693622 D KEGG: pfo:Pfl_5647 hypothetical protein; hypothetical protein 5693215..5693622 Pseudomonas putida W619 6114134 YP_001751978.1 CDS PputW619_5133 NC_010501.1 5693714 5695474 R PFAM: sodium/hydrogen exchanger; KEGG: pen:PSEEN5507 sodium/proton antiporter; sodium/hydrogen exchanger complement(5693714..5695474) Pseudomonas putida W619 6114135 YP_001751979.1 CDS PputW619_5134 NC_010501.1 5695796 5696281 D PFAM: thioesterase superfamily protein; KEGG: pen:PSEEN5508 long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 5695796..5696281 Pseudomonas putida W619 6114136 YP_001751980.1 CDS PputW619_5135 NC_010501.1 5696278 5697150 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(5696278..5697150) Pseudomonas putida W619 6114137 YP_001751981.1 CDS PputW619_5136 NC_010501.1 5697271 5697663 D KEGG: pen:PSEEN5510 hypothetical protein; hypothetical protein 5697271..5697663 Pseudomonas putida W619 6114138 YP_001751982.1 CDS PputW619_5137 NC_010501.1 5697664 5698635 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5511 cobalamin synthesis protein, P47K family; cobalamin synthesis protein P47K complement(5697664..5698635) Pseudomonas putida W619 6114139 YP_001751983.1 CDS PputW619_5138 NC_010501.1 5698675 5699301 R PFAM: Protein of unknown function DUF1826; KEGG: pen:PSEEN5512 hypothetical protein; hypothetical protein complement(5698675..5699301) Pseudomonas putida W619 6114140 YP_001751984.1 CDS PputW619_5139 NC_010501.1 5699298 5700506 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pen:PSEEN5513 cobalamin synthesis protein/P47K family protein; cobalamin synthesis protein P47K complement(5699298..5700506) Pseudomonas putida W619 6114141 YP_001751985.1 CDS PputW619_5140 NC_010501.1 5700618 5700998 D KEGG: pen:PSEEN5514 hypothetical protein; hypothetical protein 5700618..5700998 Pseudomonas putida W619 6114142 YP_001751986.1 CDS PputW619_5141 NC_010501.1 5701023 5701910 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 5701023..5701910 Pseudomonas putida W619 6114143 YP_001751987.1 CDS PputW619_5142 NC_010501.1 5701915 5702442 R KEGG: pen:PSEEN5516 hypothetical protein; hypothetical protein complement(5701915..5702442) Pseudomonas putida W619 6114144 YP_001751988.1 CDS cls NC_010501.1 5702573 5704012 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 5702573..5704012 Pseudomonas putida W619 6114145 YP_001751989.1 CDS PputW619_5144 NC_010501.1 5704048 5705232 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pen:PSEEN5518 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(5704048..5705232) Pseudomonas putida W619 6114146 YP_001751990.1 CDS PputW619_5145 NC_010501.1 5705432 5706832 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 5705432..5706832 Pseudomonas putida W619 6114147 YP_001751991.1 CDS PputW619_5146 NC_010501.1 5707369 5707725 D PFAM: regulatory protein ArsR; KEGG: psa:PST_2096 arsenic resistance transcriptional regulator; ArsR family transcriptional regulator 5707369..5707725 Pseudomonas putida W619 6114148 YP_001751992.1 CDS PputW619_5147 NC_010501.1 5707745 5708215 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pfl:PFL_2184 arsenate reductase; protein tyrosine phosphatase 5707745..5708215 Pseudomonas putida W619 6114149 YP_001751993.1 CDS PputW619_5148 NC_010501.1 5708234 5709295 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: sal:Sala_2405 arsenical-resistance protein; arsenical-resistance protein 5708234..5709295 Pseudomonas putida W619 6114150 YP_001751994.1 CDS PputW619_5149 NC_010501.1 5709299 5710015 D TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_1520 NADPH-dependent FMN reductase; arsenical resistance protein ArsH 5709299..5710015 Pseudomonas putida W619 6114151 YP_001751995.1 CDS PputW619_5150 NC_010501.1 5710175 5711179 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 5710175..5711179 Pseudomonas putida W619 6114152 YP_001751996.1 CDS PputW619_5151 NC_010501.1 5711189 5712421 D PFAM: major facilitator superfamily MFS_1; KEGG: pmy:Pmen_1523 major facilitator superfamily MFS_1; major facilitator transporter 5711189..5712421 Pseudomonas putida W619 6114153 YP_001751997.1 CDS PputW619_5152 NC_010501.1 5712479 5713387 R KEGG: pfo:Pfl_2772 hypothetical protein; hypothetical protein complement(5712479..5713387) Pseudomonas putida W619 6114154 YP_001751998.1 CDS PputW619_5153 NC_010501.1 5713505 5714812 R PFAM: sodium:dicarboxylate symporter; KEGG: pfo:Pfl_2773 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter complement(5713505..5714812) Pseudomonas putida W619 6114155 YP_001751999.1 CDS PputW619_5154 NC_010501.1 5714915 5716084 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pst:PSPTO_4062 mandelate racemase/muconate lactonizing enzyme family protein; mandelate racemase/muconate lactonizing protein complement(5714915..5716084) Pseudomonas putida W619 6114156 YP_001752000.1 CDS PputW619_5155 NC_010501.1 5716184 5717077 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pst:PSPTO_4061 transcriptional regulator, LysR family; LysR family transcriptional regulator 5716184..5717077 Pseudomonas putida W619 6114157 YP_001752001.1 CDS PputW619_5156 NC_010501.1 5717813 5718199 R KEGG: rso:RS03923 hypothetical protein; hypothetical protein complement(5717813..5718199) Pseudomonas putida W619 6114158 YP_001752002.1 CDS PputW619_5157 NC_010501.1 5718269 5719639 R TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pen:PSEEN3029 chromate transporter; chromate transporter complement(5718269..5719639) Pseudomonas putida W619 6114159 YP_001752003.1 CDS PputW619_5158 NC_010501.1 5719632 5720573 R KEGG: pmy:Pmen_2248 hypothetical protein; hypothetical protein complement(5719632..5720573) Pseudomonas putida W619 6114160 YP_001752004.1 CDS PputW619_5159 NC_010501.1 5720764 5722068 D PFAM: major facilitator superfamily MFS_1; KEGG: smd:Smed_5611 major facilitator superfamily MFS_1; major facilitator transporter 5720764..5722068 Pseudomonas putida W619 6114161 YP_001752005.1 CDS PputW619_5160 NC_010501.1 5722109 5722282 R PFAM: protein of unknown function DUF1289; KEGG: pfl:PFL_2415 hypothetical protein; hypothetical protein complement(5722109..5722282) Pseudomonas putida W619 6114162 YP_001752006.1 CDS PputW619_5161 NC_010501.1 5722352 5723293 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: psb:Psyr_1506 cation efflux protein; cation diffusion facilitator family transporter complement(5722352..5723293) Pseudomonas putida W619 6114163 YP_001752007.1 CDS PputW619_5162 NC_010501.1 5723290 5723565 R PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_1505 protein of unknown function DUF156; hypothetical protein complement(5723290..5723565) Pseudomonas putida W619 6114164 YP_001752008.1 CDS PputW619_5163 NC_010501.1 5723933 5724589 R KEGG: pmy:Pmen_2239 hypothetical protein; hypothetical protein complement(5723933..5724589) Pseudomonas putida W619 6114165 YP_001752009.1 CDS PputW619_5164 NC_010501.1 5724601 5725338 R KEGG: pmy:Pmen_2240 hypothetical protein; hypothetical protein complement(5724601..5725338) Pseudomonas putida W619 6114166 YP_001752010.1 CDS PputW619_5165 NC_010501.1 5725851 5726159 D PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156; hypothetical protein 5725851..5726159 Pseudomonas putida W619 6114167 YP_001752011.1 CDS PputW619_5166 NC_010501.1 5726164 5726604 D KEGG: psa:PST_1913 predicted membrane protein; membrane protein 5726164..5726604 Pseudomonas putida W619 6114168 YP_001752012.1 CDS PputW619_5167 NC_010501.1 5726601 5727332 D PFAM: TraX family protein; KEGG: pmy:Pmen_2245 TraX family protein; TraX family protein 5726601..5727332 Pseudomonas putida W619 6114169 YP_001752013.1 CDS PputW619_5168 NC_010501.1 5727405 5727578 R KEGG: syx:SynWH7803_0901 staphylococcal nuclease homolog; hypothetical protein complement(5727405..5727578) Pseudomonas putida W619 6114170 YP_001752014.1 CDS PputW619_5169 NC_010501.1 5727820 5728824 R KEGG: par:Psyc_1264 hypothetical protein; hypothetical protein complement(5727820..5728824) Pseudomonas putida W619 6114171 YP_001752015.1 CDS PputW619_5170 NC_010501.1 5729999 5731486 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: psa:PST_2873 probable sulfate transporter; sulfate transporter 5729999..5731486 Pseudomonas putida W619 6114172 YP_001752016.1 CDS PputW619_5171 NC_010501.1 5731498 5732349 D PFAM: UspA domain protein; KEGG: psa:PST_0155 UspA-related nucleotide-binding protein; UspA domain-containing protein 5731498..5732349 Pseudomonas putida W619 6114173 YP_001752017.1 CDS PputW619_5172 NC_010501.1 5732442 5732975 D PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2666 NUDIX hydrolase; NUDIX hydrolase 5732442..5732975 Pseudomonas putida W619 6114174 YP_001752018.1 CDS PputW619_5173 NC_010501.1 5733009 5734544 R PFAM: transposase IS66; KEGG: pau:PA14_59580 putative transposase; transposase IS66 complement(5733009..5734544) Pseudomonas putida W619 6114175 YP_001752019.1 CDS PputW619_5174 NC_010501.1 5734606 5734941 R PFAM: IS66 Orf2 family protein; KEGG: pau:PA14_59570 putative transposase; IS66 Orf2 family protein complement(5734606..5734941) Pseudomonas putida W619 6114176 YP_001752020.1 CDS PputW619_5175 NC_010501.1 5734938 5735270 R PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein complement(5734938..5735270) Pseudomonas putida W619 6114177 YP_001752021.1 CDS PputW619_5176 NC_010501.1 5735449 5735586 R KEGG: pfo:Pfl_2393 hypothetical protein; hypothetical protein complement(5735449..5735586) Pseudomonas putida W619 6114178 YP_001752022.1 CDS PputW619_5177 NC_010501.1 5735656 5737062 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_2235 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(5735656..5737062) Pseudomonas putida W619 6114179 YP_001752023.1 CDS PputW619_5178 NC_010501.1 5737062 5737739 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pmy:Pmen_2234 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator complement(5737062..5737739) Pseudomonas putida W619 6114180 YP_001752024.1 CDS PputW619_5179 NC_010501.1 5737905 5738111 D KEGG: pmy:Pmen_2220 hypothetical protein; hypothetical protein 5737905..5738111 Pseudomonas putida W619 6114181 YP_001752025.1 CDS PputW619_5180 NC_010501.1 5738293 5740110 D TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pmy:Pmen_2219 copper-resistance protein, CopA family; CopA family copper resistance protein 5738293..5740110 Pseudomonas putida W619 6114182 YP_001752026.1 CDS PputW619_5181 NC_010501.1 5740125 5740448 D KEGG: psa:PST_3382 hypothetical protein; hypothetical protein 5740125..5740448 Pseudomonas putida W619 6114183 YP_001752027.1 CDS PputW619_5182 NC_010501.1 5740438 5741553 D PFAM: copper resistance B precursor; KEGG: pmy:Pmen_2217 copper resistance B precursor; copper resistance B 5740438..5741553 Pseudomonas putida W619 6114184 YP_001752028.1 CDS PputW619_5183 NC_010501.1 5741564 5742346 D KEGG: pmy:Pmen_2216 hypothetical protein; hypothetical protein 5741564..5742346 Pseudomonas putida W619 6114185 YP_001752029.1 CDS PputW619_5184 NC_010501.1 5742336 5742791 D PFAM: protein of unknown function DUF411; KEGG: pmy:Pmen_2215 protein of unknown function DUF411; hypothetical protein 5742336..5742791 Pseudomonas putida W619 6114186 YP_001752030.1 CDS PputW619_5185 NC_010501.1 5743223 5743555 R KEGG: pmy:Pmen_2213 hypothetical protein; hypothetical protein complement(5743223..5743555) Pseudomonas putida W619 6114187 YP_001752031.1 CDS PputW619_5186 NC_010501.1 5743701 5744024 R KEGG: pst:PSPTO_0206 hypothetical protein; hypothetical protein complement(5743701..5744024) Pseudomonas putida W619 6114188 YP_001752032.1 CDS PputW619_5188 NC_010501.1 5744925 5745410 D KEGG: pap:PSPA7_3052 hypothetical protein; hypothetical protein 5744925..5745410 Pseudomonas putida W619 6114190 YP_001752033.1 CDS PputW619_5189 NC_010501.1 5745512 5745736 D KEGG: pap:PSPA7_3053 hypothetical protein; hypothetical protein 5745512..5745736 Pseudomonas putida W619 6114191 YP_001752034.1 CDS PputW619_5190 NC_010501.1 5745780 5746049 R hypothetical protein complement(5745780..5746049) Pseudomonas putida W619 6114192 YP_001752035.1 CDS PputW619_5191 NC_010501.1 5746551 5747651 D KEGG: har:HEAR3220 hypothetical protein; hypothetical protein 5746551..5747651 Pseudomonas putida W619 6114193 YP_001752036.1 CDS PputW619_5192 NC_010501.1 5747606 5749075 R KEGG: ava:Ava_3495 Tn7-like transposition protein D; hypothetical protein complement(5747606..5749075) Pseudomonas putida W619 6114194 YP_001752037.1 CDS PputW619_5193 NC_010501.1 5749100 5750503 R KEGG: pfo:Pfl_5723 Tn7-like transposition protein C; Tn7-like transposition protein C complement(5749100..5750503) Pseudomonas putida W619 6114195 YP_001752038.1 CDS PputW619_5194 NC_010501.1 5750541 5752712 R KEGG: pfo:Pfl_5724 Tn7-like transposition protein B; Tn7-like transposition protein B complement(5750541..5752712) Pseudomonas putida W619 6114196 YP_001752039.1 CDS PputW619_5195 NC_010501.1 5752705 5753604 R PFAM: TnsA endonuclease; KEGG: pfo:Pfl_5725 hypothetical protein; TnsA endonuclease complement(5752705..5753604) Pseudomonas putida W619 6114197 YP_001752040.1 CDS PputW619_5196 NC_010501.1 5753876 5755711 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5753876..5755711) Pseudomonas putida W619 6114198 YP_001752041.1 CDS PputW619_5197 NC_010501.1 5755714 5756490 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: pen:PSEEN5538 transcriptional repressor, DeoR family; DeoR family transcriptional regulator complement(5755714..5756490) Pseudomonas putida W619 6114199 YP_001752042.1 CDS PputW619_5198 NC_010501.1 5756703 5758025 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: pen:PSEEN5540 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(5756703..5758025) Pseudomonas putida W619 6114200 YP_001752043.1 CDS atpC NC_010501.1 5758191 5758610 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(5758191..5758610) Pseudomonas putida W619 6114201 YP_001752044.1 CDS PputW619_5200 NC_010501.1 5758655 5760031 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(5758655..5760031) Pseudomonas putida W619 6114202 YP_001752045.1 CDS PputW619_5201 NC_010501.1 5760059 5760919 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(5760059..5760919) Pseudomonas putida W619 6114203 YP_001752046.1 CDS PputW619_5202 NC_010501.1 5760968 5762512 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(5760968..5762512) Pseudomonas putida W619 6114204 YP_001752047.1 CDS PputW619_5203 NC_010501.1 5762534 5763070 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(5762534..5763070) Pseudomonas putida W619 6114205 YP_001752048.1 CDS PputW619_5204 NC_010501.1 5763083 5763553 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(5763083..5763553) Pseudomonas putida W619 6114206 YP_001752049.1 CDS PputW619_5205 NC_010501.1 5763610 5763867 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(5763610..5763867) Pseudomonas putida W619 6114207 YP_001752050.1 CDS PputW619_5206 NC_010501.1 5764011 5764880 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(5764011..5764880) Pseudomonas putida W619 6114208 YP_001752051.1 CDS PputW619_5207 NC_010501.1 5764897 5765304 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(5764897..5765304) Pseudomonas putida W619 6114209 YP_001752052.1 CDS PputW619_5208 NC_010501.1 5765454 5766326 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pen:PSEEN5551 chromosomal partitioning protein ParB; parB-like partition protein complement(5765454..5766326) Pseudomonas putida W619 6114210 YP_001752053.1 CDS PputW619_5209 NC_010501.1 5766336 5767127 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pen:PSEEN5552 chromosome partitioning ATPase ParA; cobyrinic acid ac-diamide synthase complement(5766336..5767127) Pseudomonas putida W619 6114211 YP_001752054.1 CDS gidB NC_010501.1 5767146 5767796 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(5767146..5767796) Pseudomonas putida W619 6114212 YP_001752055.1 CDS PputW619_5211 NC_010501.1 5767793 5769685 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(5767793..5769685) Pseudomonas putida W619 6114213 YP_001752056.1 CDS trmE NC_010501.1 5770200 5771570 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5770200..5771570) Pseudomonas putida W619 6114214 YP_001752057.1 CDS PputW619_5213 NC_010501.1 5771657 5773339 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(5771657..5773339) Pseudomonas putida W619 6114215 PputW619_R0001 tRNA PputW619_R0001 NC_010501.1 285592 285668 R tRNA-Arg complement(285592..285668) Pseudomonas putida W619 6109053 PputW619_R0002 tRNA PputW619_R0002 NC_010501.1 610639 610734 D tRNA-Sec 610639..610734 Pseudomonas putida W619 6109458 PputW619_R0004 tRNA PputW619_R0004 NC_010501.1 791505 791590 D tRNA-Leu 791505..791590 Pseudomonas putida W619 6109629 PputW619_R0005 tRNA PputW619_R0005 NC_010501.1 791689 791765 D tRNA-Met 791689..791765 Pseudomonas putida W619 6109630 PputW619_R0007 tRNA PputW619_R0007 NC_010501.1 841310 841386 D tRNA-Ile 841310..841386 Pseudomonas putida W619 6109673 PputW619_R0008 tRNA PputW619_R0008 NC_010501.1 841411 841486 D tRNA-Ala 841411..841486 Pseudomonas putida W619 6109674 PputW619_R0012 tRNA PputW619_R0012 NC_010501.1 1155385 1155458 R tRNA-Gly complement(1155385..1155458) Pseudomonas putida W619 6109967 PputW619_R0014 tRNA PputW619_R0014 NC_010501.1 1296359 1296435 D tRNA-Ile 1296359..1296435 Pseudomonas putida W619 6110094 PputW619_R0015 tRNA PputW619_R0015 NC_010501.1 1296442 1296517 D tRNA-Ala 1296442..1296517 Pseudomonas putida W619 6110095 PputW619_R0018 tRNA PputW619_R0018 NC_010501.1 1392082 1392157 D tRNA-Val 1392082..1392157 Pseudomonas putida W619 6110182 PputW619_R0019 tRNA PputW619_R0019 NC_010501.1 1392171 1392247 D tRNA-Asp 1392171..1392247 Pseudomonas putida W619 6110183 PputW619_R0020 tRNA PputW619_R0020 NC_010501.1 1392419 1392494 D tRNA-Val 1392419..1392494 Pseudomonas putida W619 6110184 PputW619_R0021 tRNA PputW619_R0021 NC_010501.1 1392508 1392584 D tRNA-Asp 1392508..1392584 Pseudomonas putida W619 6110185 PputW619_R0022 tRNA PputW619_R0022 NC_010501.1 1593388 1593477 D tRNA-Ser 1593388..1593477 Pseudomonas putida W619 6110383 PputW619_R0023 tRNA PputW619_R0023 NC_010501.1 1626952 1627027 D tRNA-Glu 1626952..1627027 Pseudomonas putida W619 6110417 PputW619_R0024 tRNA PputW619_R0024 NC_010501.1 1627030 1627105 D tRNA-Gly 1627030..1627105 Pseudomonas putida W619 6110418 PputW619_R0025 tRNA PputW619_R0025 NC_010501.1 1627197 1627272 D tRNA-Glu 1627197..1627272 Pseudomonas putida W619 6110419 PputW619_R0026 tRNA PputW619_R0026 NC_010501.1 1627276 1627351 D tRNA-Gly 1627276..1627351 Pseudomonas putida W619 6110420 PputW619_R0027 tRNA PputW619_R0027 NC_010501.1 1627437 1627512 D tRNA-Gly 1627437..1627512 Pseudomonas putida W619 6110421 PputW619_R0028 tRNA PputW619_R0028 NC_010501.1 1693637 1693712 R tRNA-Asn complement(1693637..1693712) Pseudomonas putida W619 6110472 PputW619_R0029 tRNA PputW619_R0029 NC_010501.1 1699160 1699235 D tRNA-Ala 1699160..1699235 Pseudomonas putida W619 6110476 PputW619_R0030 tRNA PputW619_R0030 NC_010501.1 1699308 1699383 D tRNA-Glu 1699308..1699383 Pseudomonas putida W619 6110477 PputW619_R0031 tRNA PputW619_R0031 NC_010501.1 1699436 1699511 D tRNA-Ala 1699436..1699511 Pseudomonas putida W619 6110478 PputW619_R0032 tRNA PputW619_R0032 NC_010501.1 1699554 1699629 D tRNA-Glu 1699554..1699629 Pseudomonas putida W619 6110479 PputW619_R0033 tRNA PputW619_R0033 NC_010501.1 1699695 1699770 D tRNA-Ala 1699695..1699770 Pseudomonas putida W619 6110480 PputW619_R0034 tRNA PputW619_R0034 NC_010501.1 1699813 1699888 D tRNA-Glu 1699813..1699888 Pseudomonas putida W619 6110481 PputW619_R0035 tRNA PputW619_R0035 NC_010501.1 1726396 1726471 D tRNA-Val 1726396..1726471 Pseudomonas putida W619 6110505 PputW619_R0036 tRNA PputW619_R0036 NC_010501.1 1726552 1726628 D tRNA-Asp 1726552..1726628 Pseudomonas putida W619 6110506 PputW619_R0037 tRNA PputW619_R0037 NC_010501.1 1726730 1726806 D tRNA-Asp 1726730..1726806 Pseudomonas putida W619 6110507 PputW619_R0038 tRNA PputW619_R0038 NC_010501.1 1726945 1727021 D tRNA-Asp 1726945..1727021 Pseudomonas putida W619 6110508 PputW619_R0039 tRNA PputW619_R0039 NC_010501.1 1819929 1820005 R tRNA-Pro complement(1819929..1820005) Pseudomonas putida W619 6110583 PputW619_R0040 tRNA PputW619_R0040 NC_010501.1 1936412 1936488 D tRNA-Arg 1936412..1936488 Pseudomonas putida W619 6110686 PputW619_R0041 tRNA PputW619_R0041 NC_010501.1 1936531 1936606 D tRNA-His 1936531..1936606 Pseudomonas putida W619 6110687 PputW619_R0042 tRNA PputW619_R0042 NC_010501.1 1936661 1936745 D tRNA-Leu 1936661..1936745 Pseudomonas putida W619 6110688 PputW619_R0043 tRNA PputW619_R0043 NC_010501.1 1936782 1936857 D tRNA-His 1936782..1936857 Pseudomonas putida W619 6110689 PputW619_R0044 tRNA PputW619_R0044 NC_010501.1 1994901 1994975 D tRNA-Gln 1994901..1994975 Pseudomonas putida W619 6110744 PputW619_R0045 tRNA PputW619_R0045 NC_010501.1 2180451 2180527 D tRNA-Val 2180451..2180527 Pseudomonas putida W619 6110901 PputW619_R0046 tRNA PputW619_R0046 NC_010501.1 2180689 2180765 D tRNA-Val 2180689..2180765 Pseudomonas putida W619 6110902 PputW619_R0047 tRNA PputW619_R0047 NC_010501.1 2201306 2201382 D tRNA-Pro 2201306..2201382 Pseudomonas putida W619 6110928 PputW619_R0048 tRNA PputW619_R0048 NC_010501.1 3541964 3542048 D tRNA-Leu 3541964..3542048 Pseudomonas putida W619 6112155 PputW619_R0049 tRNA PputW619_R0049 NC_010501.1 3547103 3547176 R tRNA-Cys complement(3547103..3547176) Pseudomonas putida W619 6112162 PputW619_R0050 tRNA PputW619_R0050 NC_010501.1 3715911 3715986 R tRNA-Gly complement(3715911..3715986) Pseudomonas putida W619 6112324 PputW619_R0051 tRNA PputW619_R0051 NC_010501.1 3738640 3738727 R tRNA-Ser complement(3738640..3738727) Pseudomonas putida W619 6112347 PputW619_R0054 tRNA PputW619_R0054 NC_010501.1 3779183 3779258 R tRNA-Ala complement(3779183..3779258) Pseudomonas putida W619 6112388 PputW619_R0055 tRNA PputW619_R0055 NC_010501.1 3779265 3779341 R tRNA-Ile complement(3779265..3779341) Pseudomonas putida W619 6112389 PputW619_R0059 tRNA PputW619_R0059 NC_010501.1 4176530 4176606 R tRNA-Arg complement(4176530..4176606) Pseudomonas putida W619 6112717 PputW619_R0060 tRNA PputW619_R0060 NC_010501.1 4179892 4179968 R tRNA-Arg complement(4179892..4179968) Pseudomonas putida W619 6112721 PputW619_R0061 tRNA PputW619_R0061 NC_010501.1 4180041 4180117 R tRNA-Arg complement(4180041..4180117) Pseudomonas putida W619 6112722 PputW619_R0062 tRNA PputW619_R0062 NC_010501.1 4180189 4180265 R tRNA-Arg complement(4180189..4180265) Pseudomonas putida W619 6112723 PputW619_R0063 tRNA PputW619_R0063 NC_010501.1 4180372 4180462 R tRNA-Ser complement(4180372..4180462) Pseudomonas putida W619 6112724 PputW619_R0064 tRNA PputW619_R0064 NC_010501.1 4393999 4394088 R tRNA-Ser complement(4393999..4394088) Pseudomonas putida W619 6112936 PputW619_R0065 tRNA PputW619_R0065 NC_010501.1 4414715 4414790 R tRNA-Lys complement(4414715..4414790) Pseudomonas putida W619 6112954 PputW619_R0066 tRNA PputW619_R0066 NC_010501.1 4436096 4436172 D tRNA-Met 4436096..4436172 Pseudomonas putida W619 6112979 PputW619_R0067 tRNA PputW619_R0067 NC_010501.1 4436309 4436385 D tRNA-Met 4436309..4436385 Pseudomonas putida W619 6112980 PputW619_R0068 tRNA PputW619_R0068 NC_010501.1 4436521 4436597 D tRNA-Met 4436521..4436597 Pseudomonas putida W619 6112981 PputW619_R0069 tRNA PputW619_R0069 NC_010501.1 4790631 4790715 D tRNA-Leu 4790631..4790715 Pseudomonas putida W619 6113316 PputW619_R0070 tRNA PputW619_R0070 NC_010501.1 4922230 4922304 D tRNA-Gln 4922230..4922304 Pseudomonas putida W619 6113431 PputW619_R0071 tRNA PputW619_R0071 NC_010501.1 4951516 4951592 D tRNA-Met 4951516..4951592 Pseudomonas putida W619 6113456 PputW619_R0072 tRNA PputW619_R0072 NC_010501.1 5007574 5007649 R tRNA-Thr complement(5007574..5007649) Pseudomonas putida W619 6113508 PputW619_R0073 tRNA PputW619_R0073 NC_010501.1 5014729 5014804 R tRNA-Lys complement(5014729..5014804) Pseudomonas putida W619 6113518 PputW619_R0074 tRNA PputW619_R0074 NC_010501.1 5014811 5014887 R tRNA-Pro complement(5014811..5014887) Pseudomonas putida W619 6113519 PputW619_R0075 tRNA PputW619_R0075 NC_010501.1 5014892 5014967 R tRNA-Asn complement(5014892..5014967) Pseudomonas putida W619 6113520 PputW619_R0078 tRNA PputW619_R0078 NC_010501.1 5039979 5040054 R tRNA-Ala complement(5039979..5040054) Pseudomonas putida W619 6113544 PputW619_R0079 tRNA PputW619_R0079 NC_010501.1 5040079 5040155 R tRNA-Ile complement(5040079..5040155) Pseudomonas putida W619 6113545 PputW619_R0081 tRNA PputW619_R0081 NC_010501.1 5159394 5159480 D tRNA-Leu 5159394..5159480 Pseudomonas putida W619 6113652 PputW619_R0082 tRNA PputW619_R0082 NC_010501.1 5159568 5159654 D tRNA-Leu 5159568..5159654 Pseudomonas putida W619 6113653 PputW619_R0083 tRNA PputW619_R0083 NC_010501.1 5246990 5247065 R tRNA-Trp complement(5246990..5247065) Pseudomonas putida W619 6113745 PputW619_R0084 tRNA PputW619_R0084 NC_010501.1 5248392 5248467 R tRNA-Thr complement(5248392..5248467) Pseudomonas putida W619 6113747 PputW619_R0085 tRNA PputW619_R0085 NC_010501.1 5248497 5248570 R tRNA-Gly complement(5248497..5248570) Pseudomonas putida W619 6113748 PputW619_R0086 tRNA PputW619_R0086 NC_010501.1 5248595 5248678 R tRNA-Tyr complement(5248595..5248678) Pseudomonas putida W619 6113749 PputW619_R0090 tRNA PputW619_R0090 NC_010501.1 5313279 5313355 D tRNA-Met 5313279..5313355 Pseudomonas putida W619 6113806 PputW619_R0091 tRNA PputW619_R0091 NC_010501.1 5438407 5438482 D tRNA-Phe 5438407..5438482 Pseudomonas putida W619 6113914 PputW619_R0092 tRNA PputW619_R0092 NC_010501.1 5448354 5448429 D tRNA-Thr 5448354..5448429 Pseudomonas putida W619 6113926 PputW619_R0097 tRNA PputW619_R0097 NC_010501.1 5614588 5614663 R tRNA-Ala complement(5614588..5614663) Pseudomonas putida W619 6114063 PputW619_R0098 tRNA PputW619_R0098 NC_010501.1 5614670 5614746 R tRNA-Ile complement(5614670..5614746) Pseudomonas putida W619 6114064 PputW619_R0006 rRNA PputW619_R0006 NC_010501.1 839694 841222 D 16S ribosomal RNA 839694..841222 Pseudomonas putida W619 6109672 PputW619_R0009 rRNA PputW619_R0009 NC_010501.1 841723 844615 D 23S ribosomal RNA 841723..844615 Pseudomonas putida W619 6109675 PputW619_R0010 rRNA PputW619_R0010 NC_010501.1 844748 844863 D 5S ribosomal RNA 844748..844863 Pseudomonas putida W619 6109676 PputW619_R0013 rRNA PputW619_R0013 NC_010501.1 1294752 1296280 D 16S ribosomal RNA 1294752..1296280 Pseudomonas putida W619 6110093 PputW619_R0016 rRNA PputW619_R0016 NC_010501.1 1296754 1299646 D 23S ribosomal RNA 1296754..1299646 Pseudomonas putida W619 6110096 PputW619_R0017 rRNA PputW619_R0017 NC_010501.1 1299779 1299894 D 5S ribosomal RNA 1299779..1299894 Pseudomonas putida W619 6110097 PputW619_R0052 rRNA PputW619_R0052 NC_010501.1 3775806 3775921 R 5S ribosomal RNA complement(3775806..3775921) Pseudomonas putida W619 6112386 PputW619_R0053 rRNA PputW619_R0053 NC_010501.1 3776054 3778946 R 23S ribosomal RNA complement(3776054..3778946) Pseudomonas putida W619 6112387 PputW619_R0056 rRNA PputW619_R0056 NC_010501.1 3779420 3780948 R 16S ribosomal RNA complement(3779420..3780948) Pseudomonas putida W619 6112390 PputW619_R0076 rRNA PputW619_R0076 NC_010501.1 5036602 5036717 R 5S ribosomal RNA complement(5036602..5036717) Pseudomonas putida W619 6113542 PputW619_R0077 rRNA PputW619_R0077 NC_010501.1 5036850 5039742 R 23S ribosomal RNA complement(5036850..5039742) Pseudomonas putida W619 6113543 PputW619_R0080 rRNA PputW619_R0080 NC_010501.1 5040243 5041771 R 16S ribosomal RNA complement(5040243..5041771) Pseudomonas putida W619 6113546 PputW619_R0087 rRNA PputW619_R0087 NC_010501.1 5251120 5251235 R 5S ribosomal RNA complement(5251120..5251235) Pseudomonas putida W619 6113753 PputW619_R0088 rRNA PputW619_R0088 NC_010501.1 5251368 5254260 R 23S ribosomal RNA complement(5251368..5254260) Pseudomonas putida W619 6113754 PputW619_R0089 rRNA PputW619_R0089 NC_010501.1 5254580 5256108 R 16S ribosomal RNA complement(5254580..5256108) Pseudomonas putida W619 6113755 PputW619_R0094 rRNA PputW619_R0094 NC_010501.1 5610986 5611101 R 5S ribosomal RNA complement(5610986..5611101) Pseudomonas putida W619 6114060 PputW619_R0095 rRNA PputW619_R0095 NC_010501.1 5611211 5611326 R 5S ribosomal RNA complement(5611211..5611326) Pseudomonas putida W619 6114061 PputW619_R0096 rRNA PputW619_R0096 NC_010501.1 5611459 5614351 R 23S ribosomal RNA complement(5611459..5614351) Pseudomonas putida W619 6114062 PputW619_R0099 rRNA PputW619_R0099 NC_010501.1 5614825 5616353 R 16S ribosomal RNA complement(5614825..5616353) Pseudomonas putida W619 6114065 PputW619_R0100 rRNA PputW619_R0100 NC_010501.1 5616806 5616921 R 5S ribosomal RNA complement(5616806..5616921) Pseudomonas putida W619 6114066 PputW619_R0101 rRNA PputW619_R0101 NC_010501.1 5617054 5619946 R 23S ribosomal RNA complement(5617054..5619946) Pseudomonas putida W619 6114067 PputW619_R0102 rRNA PputW619_R0102 NC_010501.1 5620266 5621794 R 16S ribosomal RNA complement(5620266..5621794) Pseudomonas putida W619 6114068