-- dump date 20140620_020138 -- class Genbank::CDS -- table cds_note -- id note YP_272316.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_272317.1 binds the polymerase to DNA and acts as a sliding clamp YP_272318.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_272319.1 negatively supercoils closed circular double-stranded DNA YP_272320.1 identified by match to protein family HMM PF01266 YP_272321.1 identified by similarity to SP:P24607; match to protein family HMM PF04986 YP_272322.1 identified by match to protein family HMM PF00384 YP_272323.1 identified by match to protein family HMM PF01553 YP_272324.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_272325.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_272326.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_272327.1 identified by similarity to SP:P05100; match to protein family HMM PF03352; match to protein family HMM TIGR00624 YP_272328.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_272329.1 identified by match to protein family HMM PF07551 YP_272330.1 identified by similarity to SP:P24607; match to protein family HMM PF04986 YP_272331.1 identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701 YP_272332.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_272333.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_272334.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_272335.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_272336.1 identified by match to protein family HMM PF01476 YP_272337.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_272338.1 identified by match to protein family HMM PF01300 YP_272339.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_272340.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_272341.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_272342.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_272343.1 identified by match to protein family HMM PF04069 YP_272344.1 identified by similarity to SP:O69787; match to protein family HMM PF00884 YP_272345.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272347.1 identified by match to protein family HMM PF00561 YP_272349.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_272350.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_272351.1 identified by similarity to SP:P34818; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272352.1 identified by match to protein family HMM PF05957 YP_272353.1 identified by match to protein family HMM PF07311 YP_272354.1 identified by match to protein family HMM PF06649 YP_272355.1 identified by match to protein family HMM PF00296 YP_272356.1 identified by similarity to PDB:1QWI_A.0; match to protein family HMM PF02566 YP_272357.1 identified by match to protein family HMM PF06649 YP_272359.1 identified by match to protein family HMM PF00872 YP_272361.1 identified by match to protein family HMM PF00872 YP_272363.1 identified by match to protein family HMM PF01432 YP_272364.1 identified by match to protein family HMM TIGR02443 YP_272366.1 identified by match to protein family HMM PF00034; match to protein family HMM PF03239 YP_272367.1 identified by match to protein family HMM PF01810 YP_272369.1 identified by match to protein family HMM PF00005 YP_272370.1 identified by match to protein family HMM TIGR02444 YP_272371.1 identified by similarity to SP:P15276 YP_272372.1 identified by match to protein family HMM PF00254; match to protein family HMM PF01346 YP_272373.1 binds specifically to the major sigma factor sigma 70; active in stationary phase YP_272375.1 identified by match to protein family HMM PF02600 YP_272376.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07219; match to protein family HMM PF07721 YP_272377.1 identified by match to protein family HMM PF04375 YP_272378.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_272379.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_272381.1 identified by similarity to GB:AAD31823.1; match to protein family HMM PF00072; match to protein family HMM PF04397 YP_272382.1 fimS, which was also named algZ by Yu et al (1997), is distinct from the algZ described by Baynham and Wozniak (1999).; identified by similarity to GB:AAC44751.1; match to protein family HMM PF06580 YP_272383.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_272384.1 identified by match to protein family HMM PF07670 YP_272386.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_272387.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013 YP_272388.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272389.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272390.1 functions as a Na(+)/drug antiporter YP_272391.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_272392.1 identified by similarity to SP:P09980; match to protein family HMM PF00580; match to protein family HMM TIGR01074 YP_272393.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_272394.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_272395.1 identified by match to protein family HMM PF00753 YP_272396.1 identified by similarity to GB:AAN65687.1; match to protein family HMM PF07992 YP_272397.1 identified by match to protein family HMM PF01925 YP_272398.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968 YP_272399.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_272400.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_272401.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_272403.1 identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_272404.1 identified by match to protein family HMM PF00487 YP_272405.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_272406.1 identified by match to protein family HMM PF00072 YP_272407.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_272408.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent YP_272409.1 identified by match to protein family HMM PF01360; match to protein family HMM PF07992 YP_272410.1 identified by match to protein family HMM PF00589 YP_272411.1 identified by match to protein family HMM PF07508 YP_272412.1 identified by match to protein family HMM PF02195; match to protein family HMM PF07506; match to protein family HMM TIGR00180 YP_272413.1 identified by match to protein family HMM PF07506 YP_272415.1 identified by match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851 YP_272418.1 identified by match to protein family HMM PF02384; match to protein family HMM PF02506 YP_272421.1 identified by match to protein family HMM PF00106 YP_272422.1 identified by match to protein family HMM PF00583 YP_272424.1 identified by match to protein family HMM PF01609 YP_272425.1 identified by similarity to GB:BAB60892.1; match to protein family HMM PF01609 YP_272428.1 identified by match to protein family HMM PF00614 YP_272429.1 identified by match to protein family HMM PF05488 YP_272430.1 identified by match to protein family HMM PF00872 YP_272431.1 identified by match to protein family HMM PF06812 YP_272432.1 identified by similarity to GB:AAN68697.1; match to protein family HMM PF05638 YP_272433.1 identified by match to protein family HMM PF00691 YP_272435.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_272437.1 identified by similarity to GB:AAN68701.1; match to protein family HMM PF05936 YP_272439.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_272440.1 identified by match to protein family HMM PF06996 YP_272441.1 identified by match to protein family HMM PF05947 YP_272442.1 identified by match to protein family HMM PF07025 YP_272443.1 identified by similarity to GB:AAN68707.1; match to protein family HMM PF05943 YP_272444.1 identified by similarity to GB:AAN68708.1; match to protein family HMM PF05591 YP_272448.1 identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701 YP_272449.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_272450.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272451.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_272452.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_272453.1 identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331 YP_272454.1 identified by match to protein family HMM TIGR02447 YP_272455.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_272456.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_272458.1 identified by similarity to SP:P26394; match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_272459.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_272460.1 identified by match to protein family HMM PF00795 YP_272461.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis YP_272463.1 identified by match to protein family HMM PF03573 YP_272465.1 identified by similarity to GB:CAE13806.1 YP_272466.1 identified by match to protein family HMM PF00583 YP_272467.1 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor YP_272468.1 identified by similarity to GB:CAA26251.1; match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_272470.1 identified by similarity to GB:BAC55320.2; match to protein family HMM PF01695 YP_272471.1 identified by similarity to GB:AAN85144.1 YP_272472.1 identified by match to protein family HMM PF05638 YP_272476.1 identified by match to protein family HMM PF01609 YP_272477.1 identified by match to protein family HMM PF01609 YP_272478.1 identified by similarity to GB:AAO54417.1 YP_272479.1 identified by match to protein family HMM PF07687 YP_272481.1 identified by match to protein family HMM PF01609 YP_272482.1 identified by match to protein family HMM PF01609 YP_272483.1 identified by match to protein family HMM PF03466 YP_272484.1 identified by similarity to SP:P45049; match to protein family HMM PF01078 YP_272485.1 identified by match to protein family HMM PF00004 YP_272486.1 similar to unknown protein YP_272488.1 identified by similarity to GB:AAO53612.1 YP_272491.1 identified by match to protein family HMM PF03600; match to protein family HMM TIGR00784 YP_272492.1 identified by match to protein family HMM PF04828 YP_272493.1 identified by similarity to GB:AAN70876.1 YP_272494.1 catalyzes branch migration in Holliday junction intermediates YP_272495.1 identified by similarity to GB:AAK72465.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272496.1 identified by similarity to SP:Q05613; match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_272497.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell YP_272498.1 identified by match to protein family HMM PF01618 YP_272499.1 identified by similarity to GB:AAK38651.1; match to protein family HMM PF07993 YP_272501.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_272502.1 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_272503.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_272504.1 Essential for recycling GMP and indirectly, cGMP YP_272505.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_272506.2 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_272508.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633 YP_272509.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_272511.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_272512.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_272513.1 catalyzes the formation of dUMP from dUTP YP_272514.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_272515.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_272516.1 identified by match to protein family HMM PF00496 YP_272517.1 required for 70S ribosome assembly YP_272518.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_272519.1 identified by match to protein family HMM PF05899 YP_272520.1 identified by match to protein family HMM PF00171 YP_272521.1 identified by match to protein family HMM PF07690 YP_272522.1 identified by similarity to GB:AAO53649.1; match to protein family HMM PF00614 YP_272523.1 identified by similarity to SP:P39389; match to protein family HMM PF00155; match to protein family HMM PF00392 YP_272525.1 identified by similarity to GB:AAN54332.1 YP_272526.1 identified by match to protein family HMM PF03692 YP_272527.1 identified by match to protein family HMM PF01037 YP_272528.1 catalyzes the oxidative deamination of D-amino acids YP_272529.1 identified by match to protein family HMM PF01042 YP_272530.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA YP_272531.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_272532.1 identified by similarity to SP:P11732 YP_272535.1 identified by match to protein family HMM PF06127 YP_272536.1 identified by match to protein family HMM PF00027 YP_272537.1 identified by match to protein family HMM PF01547 YP_272538.1 identified by match to protein family HMM PF00528 YP_272539.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_272540.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_272541.1 identified by match to protein family HMM TIGR02448 YP_272542.1 identified by similarity to GB:AAO53864.1; match to protein family HMM PF00437; match to protein family HMM PF05157 YP_272544.1 identified by match to protein family HMM PF01037 YP_272545.1 identified by match to protein family HMM PF01928 YP_272546.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_272547.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_272548.1 involved in the first step of glutathione biosynthesis YP_272549.1 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_272550.1 identified by match to protein family HMM PF00575 YP_272551.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_272552.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_272554.1 identified by match to protein family HMM PF07043 YP_272556.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_272557.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_272558.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_272559.1 identified by match to protein family HMM PF01510 YP_272560.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_272561.1 identified by match to protein family HMM PF03372 YP_272562.1 identified by match to protein family HMM PF01323 YP_272563.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_272564.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_272566.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_272567.1 identified by match to protein family HMM PF01297 YP_272568.1 identified by similarity to SP:P32692 YP_272569.1 identified by match to protein family HMM PF00005 YP_272570.1 identified by match to protein family HMM PF00950 YP_272571.1 identified by match to protein family HMM PF00515 YP_272572.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide YP_272573.1 part of the metNIQ transport system for methionine YP_272574.1 identified by match to protein family HMM PF00528 YP_272575.1 identified by match to protein family HMM PF03180 YP_272576.1 identified by match to protein family HMM PF02630 YP_272577.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_272579.1 identified by match to protein family HMM PF00916 YP_272580.1 identified by similarity to SP:P17582; match to protein family HMM PF00484 YP_272581.1 identified by match to protein family HMM PF04055 YP_272582.1 identified by match to protein family HMM PF01965 YP_272583.1 identified by match to protein family HMM PF00597 YP_272584.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_272585.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_272586.1 identified by similarity to SP:P29014; match to protein family HMM PF02541 YP_272587.1 identified by match to protein family HMM PF00005 YP_272588.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_272589.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_272590.1 identified by match to protein family HMM PF00497 YP_272591.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_272592.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_272593.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_272594.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_272595.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_272596.1 identified by match to protein family HMM PF04752 YP_272597.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell YP_272598.1 identified by match to protein family HMM TIGR01352 YP_272601.1 identified by similarity to SP:Q03708; match to protein family HMM PF01320 YP_272602.1 identified by match to protein family HMM PF00107 YP_272603.1 identified by match to protein family HMM PF03748 YP_272604.1 identified by similarity to GB:AAN70770.1; match to protein family HMM PF04543 YP_272606.1 identified by match to protein family HMM PF01812 YP_272607.1 identified by similarity to GB:AAO58652.1; match to protein family HMM PF05164 YP_272608.1 identified by match to protein family HMM TIGR02449 YP_272609.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown YP_272610.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_272611.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone YP_272612.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol YP_272613.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_272614.1 identified by similarity to GB:AAQ58056.1; match to protein family HMM PF06821 YP_272615.1 identified by similarity to SP:P17899; match to protein family HMM PF00158 YP_272616.1 identified by match to protein family HMM PF01851; match to protein family HMM PF03180 YP_272617.1 identified by match to protein family HMM PF03583 YP_272618.1 identified by match to protein family HMM PF07690 YP_272622.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601 YP_272623.1 identified by match to protein family HMM PF02668 YP_272624.1 identified by match to protein family HMM PF00005 YP_272625.1 identified by match to protein family HMM PF00528 YP_272630.1 identified by match to protein family HMM TIGR01730 YP_272631.1 identified by match to protein family HMM TIGR01730 YP_272632.1 identified by match to protein family HMM PF00873 YP_272635.1 identified by match to protein family HMM PF00528 YP_272636.1 identified by match to protein family HMM PF00005 YP_272637.1 identified by match to protein family HMM PF03180 YP_272638.1 identified by similarity to SP:P54995 YP_272639.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_272640.1 identified by match to protein family HMM PF08028 YP_272642.1 identified by match to protein family HMM PF00872 YP_272643.1 identified by match to protein family HMM PF00005 YP_272644.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_272645.1 identified by match to protein family HMM PF00497 YP_272646.1 catalyzes the formation of pyruvate from D-cysteine YP_272647.1 identified by match to protein family HMM PF00132 YP_272648.1 identified by match to protein family HMM PF04542 YP_272650.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_272651.1 identified by similarity to SP:P24696; match to protein family HMM PF05962 YP_272652.1 identified by similarity to SP:P12380; similarity to SP:P22773; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_272653.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_272654.1 identified by similarity to SP:P39281 YP_272656.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_272659.1 identified by similarity to SP:P13031; match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_272660.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_272661.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_272662.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_272663.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_272665.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272666.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272667.2 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_272668.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_272669.1 Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif YP_272670.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_272671.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_272672.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_272673.1 identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982 YP_272674.1 identified by match to protein family HMM PF06843 YP_272675.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_272676.1 identified by match to protein family HMM TIGR02610 YP_272677.1 identified by match to protein family HMM TIGR01837 YP_272678.1 identified by match to protein family HMM PF05597; match to protein family HMM TIGR01837 YP_272679.1 identified by similarity to GB:AAO58572.1; match to protein family HMM PF00440 YP_272680.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01839 YP_272681.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02240 YP_272682.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01839 YP_272683.1 identified by match to protein family HMM PF06155 YP_272684.1 heat shock protein involved in degradation of misfolded proteins YP_272685.1 heat shock protein involved in degradation of misfolded proteins YP_272686.1 identified by match to protein family HMM PF05036 YP_272687.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_272688.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_272689.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_272690.1 identified by match to protein family HMM PF00565 YP_272691.1 identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF03949 YP_272692.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_272693.1 identified by match to protein family HMM TIGR01175 YP_272694.1 identified by similarity to GB:AAA87403.1; match to protein family HMM PF05137 YP_272695.1 identified by match to protein family HMM PF04350 YP_272696.1 identified by similarity to GB:AAA93089.1; match to protein family HMM PF04351 YP_272697.1 identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_272698.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_272699.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_272700.1 identified by match to protein family HMM PF01842 YP_272701.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_272703.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_272704.1 identified by match to protein family HMM PF01425 YP_272707.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_272708.1 identified by similarity to SP:P94212; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_272709.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_272710.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_272713.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_272714.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272715.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_272716.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_272717.1 identified by match to protein family HMM PF07977 YP_272718.1 FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_272721.1 identified by match to protein family HMM PF01494 YP_272724.1 identified by similarity to SP:Q55116; match to protein family HMM PF03061 YP_272725.1 identified by similarity to SP:P10944; match to protein family HMM PF00221 YP_272726.1 identified by similarity to GB:CAD13959.1 YP_272727.1 identified by match to protein family HMM PF00535 YP_272728.1 identified by match to protein family HMM PF00501; match to protein family HMM PF07977 YP_272729.1 identified by similarity to SP:P95745 YP_272730.1 carries the fatty acid chain in fatty acid biosynthesis YP_272732.1 identified by match to protein family HMM PF01553 YP_272734.1 identified by similarity to SP:P37522; match to protein family HMM PF01656 YP_272735.1 identified by match to protein family HMM PF05488 YP_272736.1 identified by match to protein family HMM TIGR01110 YP_272737.1 catalyzes the reversible formation of 2'-(5''-triphosphoribosyl)-3'dephospho-CoA from 3-dephospho-CoA YP_272738.1 acyl carrier protein of malonate decarboxylase YP_272739.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_272740.1 identified by match to protein family HMM PF06833 YP_272741.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_272742.1 identified by similarity to GB:BAA36210.1; match to protein family HMM PF00698 YP_272743.1 identified by match to protein family HMM PF03817 YP_272744.1 identified by match to protein family HMM PF03818; match to protein family HMM TIGR00808 YP_272745.1 identified by similarity to GB:AAC45461.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272746.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_272747.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_272748.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_272749.1 identified by match to protein family HMM PF01593 YP_272750.1 identified by match to protein family HMM PF01292 YP_272751.1 identified by match to protein family HMM PF04264 YP_272752.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_272753.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_272754.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_272755.1 identified by match to protein family HMM PF03061 YP_272756.1 identified by similarity to SP:P30147 YP_272757.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_272758.1 identified by match to protein family HMM PF00596 YP_272759.1 identified by match to protein family HMM PF07005 YP_272760.1 identified by similarity to SP:Q46888; match to protein family HMM PF03446 YP_272761.1 identified by match to protein family HMM PF03692 YP_272762.1 identified by similarity to SP:P77434; match to protein family HMM PF00155 YP_272763.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_272765.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_272766.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_272767.1 identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081 YP_272768.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_272769.1 identified by match to protein family HMM PF02325 YP_272770.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_272771.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_272772.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_272773.1 identified by match to protein family HMM PF00877 YP_272774.1 identified by match to protein family HMM PF05154 YP_272775.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_272776.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_272777.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_272778.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_272779.1 identified by match to protein family HMM PF02622 YP_272780.1 identified by match to protein family HMM TIGR01352 YP_272781.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_272782.1 identified by similarity to SP:P46384; match to protein family HMM PF00072 YP_272783.1 identified by match to protein family HMM PF00072 YP_272784.1 identified by similarity to SP:P43502; match to protein family HMM PF01584 YP_272785.1 identified by similarity to SP:P42257; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272786.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_272787.1 identified by match to protein family HMM PF01584 YP_272788.1 identified by similarity to SP:Q88CW2; match to protein family HMM PF02696 YP_272789.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_272791.1 identified by match to protein family HMM PF03746; similar to lactam utilization protein YP_272792.1 identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724 YP_272793.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_272794.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS YP_272795.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_272797.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_272798.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_272799.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_272801.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_272804.1 identified by match to protein family HMM PF00583 YP_272806.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667 YP_272807.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_272808.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_272809.1 identified by similarity to SP:P10802; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348 YP_272810.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_272811.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_272812.1 identified by similarity to SP:P37692; match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_272813.1 identified by similarity to SP:P24173; match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_272814.1 identified by match to protein family HMM PF00534 YP_272815.1 identified by similarity to SP:Q06995; match to protein family HMM PF06293 YP_272816.1 identified by match to protein family HMM PF06293 YP_272817.1 identified by match to protein family HMM PF06293 YP_272821.1 identified by match to protein family HMM PF02543 YP_272822.1 identified by match to protein family HMM PF00534 YP_272823.1 identified by match to protein family HMM PF07395 YP_272824.1 identified by match to protein family HMM PF02585 YP_272828.1 identified by similarity to GB:AAD17955.1 YP_272829.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_272830.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_272832.1 identified by match to protein family HMM PF00248 YP_272833.1 identified by match to protein family HMM PF01266 YP_272834.1 identified by similarity to SP:Q57225; match to protein family HMM PF00893 YP_272835.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_272836.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_272837.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_272838.1 identified by match to protein family HMM TIGR02358 YP_272841.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_272842.1 identified by similarity to GB:AAN70485.1; match to protein family HMM PF06853 YP_272844.1 identified by match to protein family HMM PF00149 YP_272845.1 identified by similarity to SP:P36653; match to protein family HMM PF05728 YP_272846.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_272847.1 identified by similarity to GB:AAO58390.1 YP_272848.1 identified by match to protein family HMM TIGR02281 YP_272849.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_272850.1 identified by match to protein family HMM PF03886 YP_272851.1 identified by match to protein family HMM PF00672 YP_272852.1 identified by match to protein family HMM PF00702; match to protein family HMM PF01842; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_272854.1 identified by match to protein family HMM PF00581; match to protein family HMM PF02666; match to protein family HMM TIGR00163 YP_272856.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_272857.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_272858.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_272859.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_272860.1 identified by match to protein family HMM PF03458 YP_272861.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_272862.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_272863.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_272864.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01520 YP_272865.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_272866.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_272867.1 Stimulates the elongation of poly(A) tails YP_272869.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_272870.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_272871.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_272872.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_272873.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272874.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_272875.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_272876.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_272877.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_272879.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_272880.1 unwinds double stranded DNA YP_272881.1 identified by match to protein family HMM PF04055 YP_272883.1 identified by match to protein family HMM PF01841 YP_272884.1 identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_272885.1 identified by match to protein family HMM PF01841 YP_272886.1 identified by similarity to SP:P00282; match to protein family HMM PF00127 YP_272887.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_272888.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_272889.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272890.1 identified by match to protein family HMM PF01094 YP_272891.1 identified by match to protein family HMM PF02653 YP_272892.1 identified by match to protein family HMM PF02653 YP_272893.1 identified by match to protein family HMM PF00005 YP_272894.1 identified by match to protein family HMM PF00005 YP_272897.1 identified by similarity to SP:Q9KWN1; match to protein family HMM PF00106 YP_272898.1 identified by match to protein family HMM PF07221 YP_272899.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_272900.1 identified by match to protein family HMM PF00348 YP_272901.2 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_272902.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324 YP_272903.1 identified by match to protein family HMM PF06250 YP_272904.1 YghU; B2989; one of eight glutathione transferases from E. coli YP_272906.1 identified by match to protein family HMM PF01609 YP_272917.1 identified by match to protein family HMM PF00872 YP_272918.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_272919.1 synthesizes RNA primers at the replication forks YP_272920.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_272921.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_272922.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_272923.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_272924.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_272925.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_272926.1 identified by match to protein family HMM PF04293 YP_272927.1 identified by match to protein family HMM PF04285 YP_272928.1 identified by match to protein family HMM PF06798 YP_272929.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine YP_272930.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_272931.1 protein associated with Co2+ and Mg2+ efflux YP_272932.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_272933.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_272934.1 identified by match to protein family HMM PF00639 YP_272935.1 identified by similarity to SP:P31554; match to protein family HMM PF04453 YP_272936.1 identified by similarity to GB:CAD14042.1 YP_272937.1 identified by match to protein family HMM PF00483 YP_272938.1 identified by match to protein family HMM PF00226 YP_272940.1 identified by match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_272941.1 identified by similarity to SP:P07027; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_272942.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_272943.1 identified by match to protein family HMM PF01547 YP_272944.1 identified by match to protein family HMM PF00528 YP_272945.1 identified by match to protein family HMM PF00528 YP_272946.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_272947.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_272948.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_272949.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_272951.1 identified by similarity to GB:AAN69495.1 YP_272952.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381 YP_272954.1 identified by match to protein family HMM PF00150 YP_272957.1 identified by similarity to GB:AAL25892.1; match to protein family HMM PF06274 YP_272958.1 identified by similarity to GB:AAP17398.1 YP_272960.1 identified by match to protein family HMM PF07157 YP_272961.1 identified by match to protein family HMM PF06893 YP_272963.1 identified by match to protein family HMM PF00182 YP_272964.1 identified by similarity to GB:AAQ55012.1; match to protein family HMM PF03245 YP_272965.1 identified by match to protein family HMM PF00589 YP_272966.1 identified by match to protein family HMM PF05930 YP_272969.1 identified by match to protein family HMM PF00817 YP_272970.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_272971.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_272972.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_272974.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_272975.1 identified by match to protein family HMM PF02566 YP_272976.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_272978.1 identified by match to protein family HMM PF01230 YP_272979.1 identified by match to protein family HMM PF00106 YP_272980.1 identified by match to protein family HMM PF05656 YP_272981.1 identified by match to protein family HMM PF03653; match to protein family HMM TIGR00701 YP_272982.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_272983.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_272984.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_272985.1 identified by match to protein family HMM PF01551 YP_272986.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_272987.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_272988.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_272989.1 identified by match to protein family HMM TIGR01447 YP_272990.1 identified by match to protein family HMM PF00293 YP_272991.1 identified by match to protein family HMM PF05488 YP_272992.1 identified by match to protein family HMM PF00872 YP_272993.1 identified by similarity to GB:AAN85144.1; match to protein family HMM PF00126; match to protein family HMM PF00665; match to protein family HMM PF03466 YP_272994.1 identified by match to protein family HMM PF01019 YP_272997.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_272998.1 identified by match to protein family HMM PF00005 YP_272999.1 identified by match to protein family HMM TIGR01098 YP_273000.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_273001.1 identified by match to protein family HMM PF01925 YP_273002.1 identified by similarity to PIR:F64598; match to protein family HMM PF02525 YP_273003.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273004.1 identified by match to protein family HMM PF00348 YP_273005.2 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_273006.1 involved in the peptidyltransferase reaction during translation YP_273007.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_273008.2 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_273009.1 identified by match to protein family HMM PF05981 YP_273010.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_273011.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_273012.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_273013.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_273014.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_273015.1 identified by match to protein family HMM PF00254 YP_273016.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_273017.1 identified by similarity to GB:AAO54352.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_273018.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_273019.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02523 YP_273022.1 identified by similarity to GB:AAO54357.1 YP_273023.1 identified by similarity to GB:AAC38305.1; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_273024.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352 YP_273025.1 identified by match to protein family HMM PF00873 YP_273026.1 identified by match to protein family HMM TIGR01730 YP_273027.1 identified by match to protein family HMM PF00440 YP_273028.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_273029.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_273031.1 identified by similarity to SP:Q50985; match to protein family HMM PF03696 YP_273032.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_273033.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_273034.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_273035.1 identified by match to protein family HMM PF00589; ORF1 YP_273040.1 identified by match to protein family HMM PF01751 YP_273042.1 identified by match to protein family HMM PF00440 YP_273043.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691 YP_273045.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_273046.1 identified by similarity to GB:AAP22535.1; match to protein family HMM PF07419 YP_273048.1 identified by match to protein family HMM PF07511 YP_273049.1 identified by similarity to GB:AAO54386.1; match to protein family HMM PF07274 YP_273050.1 identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283 YP_273054.1 identified by match to protein family HMM PF01323 YP_273055.1 identified by match to protein family HMM PF01609 YP_273056.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_273057.1 identified by match to protein family HMM PF00563 YP_273061.1 identified by match to protein family HMM PF01609 YP_273062.1 identified by match to protein family HMM TIGR00229 YP_273063.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_273064.1 identified by match to protein family HMM PF01103 YP_273065.1 identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_273066.1 identified by match to protein family HMM PF00817 YP_273069.1 identified by match to protein family HMM PF01609 YP_273070.1 identified by similarity to GB:AAA88437.1; match to protein family HMM PF01527 YP_273071.1 identified by similarity to GB:CAD42759.1; match to protein family HMM PF00665 YP_273072.1 identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_273076.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_273077.1 identified by match to protein family HMM PF02321 YP_273078.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_273082.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_273083.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_273084.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_273085.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_273086.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273087.1 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_273088.1 identified by match to protein family HMM PF01740 YP_273089.1 identified by similarity to GB:CAA56329.1; match to protein family HMM PF00072 YP_273090.1 identified by match to protein family HMM PF00015 YP_273091.1 identified by similarity to SP:P00393; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_273092.1 identified by match to protein family HMM PF03473 YP_273094.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_273095.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846; similar to toxin secretion ATP-binding protein YP_273096.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_273097.1 identified by similarity to GB:AAF36415.1; match to protein family HMM PF00353; match to protein family HMM PF06594 YP_273098.1 identified by match to protein family HMM PF03884 YP_273099.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_273100.1 identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_273101.1 identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482 YP_273102.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538 YP_273103.1 identified by match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_273104.1 identified by match to protein family HMM PF00872 YP_273105.1 identified by similarity to PIR:D71147 YP_273106.1 identified by match to protein family HMM PF07509 YP_273108.1 identified by match to protein family HMM PF00089 YP_273109.1 identified by similarity to GB:CAE51600.1 YP_273113.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_273114.1 identified by similarity to GB:AAD47284.1; match to protein family HMM PF02342 YP_273115.1 identified by similarity to GB:AAD47285.1; match to protein family HMM PF02342 YP_273116.1 identified by similarity to GB:AAD47286.1; match to protein family HMM PF05099 YP_273117.1 identified by similarity to GB:AAD47287.1; match to protein family HMM PF03741 YP_273118.1 identified by similarity to GB:AAD47288.1; match to protein family HMM PF02342 YP_273119.1 identified by similarity to GB:AAD47288.1; match to protein family HMM PF02342 YP_273120.1 identified by similarity to GB:AAD47285.1 YP_273121.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266 YP_273122.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_273123.1 identified by match to protein family HMM PF07793 YP_273124.1 identified by similarity to GB:AAC98783.1; match to protein family HMM PF01510 YP_273125.1 identified by similarity to SP:P13017 YP_273126.1 identified by match to protein family HMM PF01026 YP_273127.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism YP_273128.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_273129.1 identified by similarity to SP:P23539; match to protein family HMM PF00294 YP_273130.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427 YP_273131.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_273133.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_273134.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_273135.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_273136.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_273137.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_273138.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158 YP_273139.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273141.2 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_273142.1 identified by similarity to SP:P18274; match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_273143.1 identified by match to protein family HMM PF00155 YP_273144.1 Regulatory factor involved in maltose metabolism YP_273145.1 identified by match to protein family HMM PF00355 YP_273146.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126 YP_273147.1 identified by match to protein family HMM PF00805 YP_273149.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02071 YP_273151.1 identified by match to protein family HMM PF04287 YP_273153.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_273154.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_273155.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_273156.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_273157.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_273158.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_273164.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_273166.1 identified by match to protein family HMM PF00484 YP_273167.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273168.1 identified by match to protein family HMM PF01966 YP_273171.1 identified by match to protein family HMM PF01757 YP_273172.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_273173.1 identified by similarity to GB:AAS61691.1; match to protein family HMM PF04134 YP_273174.1 identified by match to protein family HMM PF01609 YP_273175.1 identified by match to protein family HMM PF07690 YP_273176.1 identified by match to protein family HMM PF01066 YP_273178.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273179.1 identified by match to protein family HMM PF00583 YP_273180.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_273181.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_273184.1 identified by match to protein family HMM PF00857 YP_273185.1 identified by similarity to SP:P42251; match to protein family HMM PF00245 YP_273186.1 identified by match to protein family HMM PF00583 YP_273187.1 identified by match to protein family HMM PF02472 YP_273188.1 identified by match to protein family HMM TIGR01352 YP_273189.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_273190.1 identified by match to protein family HMM PF01618 YP_273191.1 identified by match to protein family HMM PF00614 YP_273192.1 identified by match to protein family HMM PF01609 YP_273193.1 identified by match to protein family HMM PF00583 YP_273194.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_273195.1 identified by similarity to SP:Q06584; match to protein family HMM PF06958 YP_273197.1 identified by match to protein family HMM TIGR02293 YP_273198.1 identified by match to protein family HMM PF00072 YP_273200.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356 YP_273201.1 identified by similarity to SP:P40685; match to protein family HMM TIGR02451 YP_273202.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_273205.1 identified by match to protein family HMM PF01263 YP_273206.1 identified by match to protein family HMM PF00892 YP_273207.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_273208.2 identified by match to protein family HMM PF04290 YP_273209.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_273210.1 identified by match to protein family HMM PF03758 YP_273211.1 identified by match to protein family HMM PF07993 YP_273212.1 identified by match to protein family HMM PF03573 YP_273213.1 identified by match to protein family HMM PF00106 YP_273214.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273216.1 identified by match to protein family HMM PF06745 YP_273217.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273218.1 identified by similarity to GB:AAN87699.1 YP_273222.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273223.1 identified by match to protein family HMM PF00534 YP_273224.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_273225.1 identified by match to protein family HMM TIGR01472 YP_273226.1 identified by match to protein family HMM PF01061 YP_273227.1 identified by match to protein family HMM PF00005 YP_273229.1 identified by similarity to GB:BAA07750.1; match to protein family HMM PF00534 YP_273230.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_273232.1 identified by similarity to SP:Q45539; match to protein family HMM PF00535 YP_273233.1 identified by match to protein family HMM PF00483 YP_273234.1 identified by match to protein family HMM TIGR00374 YP_273238.1 identified by similarity to GB:AAO58992.1; match to protein family HMM TIGR01199 YP_273239.1 identified by similarity to SP:P37744; match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_273240.1 identified by match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_273241.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_273244.1 identified by match to protein family HMM PF00515 YP_273247.1 identified by match to protein family HMM PF00535 YP_273249.1 identified by match to protein family HMM PF00535 YP_273252.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842 YP_273253.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_273254.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_273255.1 identified by match to protein family HMM PF00534 YP_273256.1 identified by similarity to SP:P24174; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_273258.1 identified by similarity to GB:AAN85144.1; match to protein family HMM PF00665 YP_273259.1 identified by similarity to GB:BAC55320.2; match to protein family HMM PF01695 YP_273260.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_273261.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_273262.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_273263.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_273264.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_273265.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_273266.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_273267.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_273268.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_273269.1 identified by match to protein family HMM TIGR00536 YP_273270.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_273271.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_273274.1 identified by match to protein family HMM PF03692 YP_273276.1 identified by match to protein family HMM PF02353 YP_273277.1 identified by match to protein family HMM PF07103 YP_273278.1 identified by similarity to GB:AAN68344.1 YP_273279.1 identified by match to protein family HMM PF00106 YP_273281.1 identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_273282.1 identified by match to protein family HMM PF00376 YP_273283.1 identified by match to protein family HMM PF04463 YP_273284.1 identified by match to protein family HMM TIGR02450 YP_273285.1 identified by similarity to GB:AAM36203.1; match to protein family HMM PF07992 YP_273286.1 identified by match to protein family HMM TIGR01777 YP_273287.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_273288.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_273289.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_273290.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_273293.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_273294.1 identified by match to protein family HMM PF00497 YP_273295.1 identified by match to protein family HMM PF02574 YP_273296.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_273305.1 identified by match to protein family HMM PF02586 YP_273306.1 identified by match to protein family HMM PF01435 YP_273307.1 identified by match to protein family HMM PF01169 YP_273308.1 identified by match to protein family HMM PF05175 YP_273309.1 identified by match to protein family HMM PF01810 YP_273310.1 activates fatty acids by binding to coenzyme A YP_273311.1 identified by match to protein family HMM PF06980 YP_273312.1 identified by match to protein family HMM PF07044 YP_273313.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_273314.1 identified by similarity to SP:Q57501; match to protein family HMM PF01613 YP_273315.1 identified by match to protein family HMM PF00561 YP_273316.1 identified by match to protein family HMM PF01042 YP_273317.1 identified by match to protein family HMM PF00857 YP_273318.1 identified by match to protein family HMM PF00296 YP_273319.1 identified by match to protein family HMM PF00440 YP_273320.1 identified by match to protein family HMM PF02608 YP_273321.1 identified by match to protein family HMM PF00005 YP_273322.1 identified by match to protein family HMM PF02653 YP_273323.1 identified by match to protein family HMM PF02653 YP_273324.1 identified by match to protein family HMM PF00691 YP_273325.1 identified by match to protein family HMM PF01553 YP_273326.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_273328.1 identified by match to protein family HMM PF00254 YP_273329.1 identified by similarity to SP:P06610; match to protein family HMM PF00255 YP_273330.1 identified by match to protein family HMM PF00724 YP_273331.1 identified by match to protein family HMM PF00534 YP_273332.1 hypothetical secreted protein YP_273334.1 identified by match to protein family HMM PF00872 YP_273336.1 role in sulfur assimilation YP_273337.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_273339.1 identified by match to protein family HMM PF06844 YP_273340.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_273341.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_273342.1 identified by match to protein family HMM PF00106 YP_273345.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_273346.1 identified by match to protein family HMM PF00106 YP_273353.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_273354.1 identified by match to protein family HMM PF07130 YP_273355.1 identified by match to protein family HMM PF06146 YP_273360.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_273361.1 identified by similarity to SP:P23485; similarity to PIR:S46356; match to protein family HMM PF04773 YP_273362.2 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this protein may be involved in ferric dicitrate uptake YP_273365.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_273366.1 identified by match to protein family HMM PF00892 YP_273367.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_273368.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273369.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_273370.1 identified by similarity to SP:P24128; match to protein family HMM PF04632 YP_273371.1 identified by match to protein family HMM PF07869 YP_273372.1 identified by match to protein family HMM PF00529 YP_273373.1 identified by match to protein family HMM PF00106 YP_273375.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_273376.1 identified by similarity to SP:Q88ND4 YP_273377.1 identified by similarity to SP:O52197 YP_273378.1 identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062 YP_273379.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export YP_273380.1 identified by similarity to GB:AAA91126.1 YP_273381.1 identified by similarity to SP:Q51371 YP_273382.1 identified by similarity to SP:P18895 YP_273383.1 identified by similarity to GB:AAC38141.1 YP_273384.1 identified by similarity to SP:Q9HY69 YP_273385.1 identified by similarity to SP:Q52463 YP_273386.1 identified by similarity to SP:O07299; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_273387.1 identified by similarity to SP:Q88NC3; match to protein family HMM PF03883 YP_273388.1 identified by match to protein family HMM PF01522 YP_273389.1 identified by match to protein family HMM PF02562 YP_273390.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_273391.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687 YP_273392.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_273393.1 identified by match to protein family HMM PF03783 YP_273395.1 identified by match to protein family HMM PF05643 YP_273396.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_273397.1 identified by match to protein family HMM PF02230 YP_273398.1 identified by match to protein family HMM PF00497 YP_273399.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_273400.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_273401.1 identified by match to protein family HMM PF00005 YP_273402.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896 YP_273403.1 identified by match to protein family HMM PF02716 YP_273404.1 identified by match to protein family HMM PF01638 YP_273406.1 identified by match to protein family HMM PF01541 YP_273408.1 identified by similarity to GB:AAN85144.1; match to protein family HMM PF00665 YP_273409.1 identified by similarity to GB:BAC55320.2; match to protein family HMM PF01695 YP_273413.1 identified by similarity to SP:P33920; match to protein family HMM PF04245 YP_273416.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_273417.1 identified by similarity to GB:AAP44274.1 YP_273418.1 identified by match to protein family HMM PF00216 YP_273419.2 identified by match to protein family HMM PF05971 YP_273420.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_273421.1 identified by match to protein family HMM PF00646 YP_273423.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_273424.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_273425.1 identified by match to protein family HMM PF03739 YP_273426.1 identified by match to protein family HMM PF03739 YP_273427.1 identified by similarity to SP:P72191; match to protein family HMM PF00313 YP_273428.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 YP_273429.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_273430.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_273432.1 identified by match to protein family HMM PF02321 YP_273433.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_273434.1 identified by match to protein family HMM PF00072 YP_273435.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273436.1 identified by similarity to SP:P07604; match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR01199 YP_273438.1 identified by match to protein family HMM PF04304 YP_273439.1 identified by match to protein family HMM PF01126 YP_273440.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786 YP_273441.1 identified by match to protein family HMM PF04773 YP_273442.1 identified by match to protein family HMM PF04542 YP_273443.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_273444.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_273445.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_273446.1 identified by similarity to GB:AAC44475.1; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_273447.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_273448.1 identified by match to protein family HMM PF01547 YP_273449.1 identified by match to protein family HMM PF00528 YP_273450.1 identified by match to protein family HMM PF00528 YP_273451.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_273452.1 identified by match to protein family HMM PF04966 YP_273453.1 identified by match to protein family HMM PF01263 YP_273454.1 Represses the expression of the zwf, eda, glp and gap YP_273455.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_273456.1 identified by similarity to GB:AAD22666.1; match to protein family HMM TIGR01198 YP_273457.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_273458.1 identified by similarity to GB:CAD17121.1 YP_273459.1 identified by match to protein family HMM TIGR02284 YP_273460.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_273461.1 identified by similarity to SP:P77485; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_273462.1 identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_273463.1 identified by similarity to GB:BAC06608.1; match to protein family HMM PF00873 YP_273464.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_273466.1 identified by match to protein family HMM PF00419 YP_273467.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_273468.1 identified by match to protein family HMM PF00577 YP_273471.1 identified by match to protein family HMM PF03692 YP_273472.1 identified by match to protein family HMM PF00583 YP_273473.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_273475.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_273476.1 identified by similarity to SP:P18400; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_273477.1 identified by similarity to SP:P18401; match to protein family HMM PF00115 YP_273478.1 identified by similarity to SP:P18402; match to protein family HMM PF00510 YP_273479.1 identified by similarity to SP:P18403; match to protein family HMM PF03626 YP_273480.1 converts protoheme IX and farnesyl diphosphate to heme O YP_273482.1 identified by match to protein family HMM PF00535 YP_273484.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_273486.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273487.1 identified by match to protein family HMM PF00497 YP_273488.1 identified by match to protein family HMM PF01022 YP_273489.1 identified by match to protein family HMM PF00107 YP_273490.1 identified by similarity to SP:P53635; match to protein family HMM PF00080 YP_273492.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887 YP_273494.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_273498.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_273500.1 identified by match to protein family HMM PF00857 YP_273501.1 identified by match to protein family HMM PF00857 YP_273502.1 identified by match to protein family HMM PF02653 YP_273503.1 identified by match to protein family HMM PF02653 YP_273504.1 catalyzes the hydrolysis of allophanate YP_273505.1 identified by similarity to GB:AAO54884.1 YP_273506.1 identified by match to protein family HMM PF01037 YP_273507.1 identified by match to protein family HMM PF01810; similar to amino acid efflux protein YP_273508.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_273509.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_273510.1 identified by match to protein family HMM PF07366 YP_273511.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_273513.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728 YP_273515.1 identified by match to protein family HMM PF07119 YP_273516.1 identified by match to protein family HMM PF07859 YP_273517.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_273518.1 identified by match to protein family HMM PF00456 YP_273519.1 identified by match to protein family HMM PF07690 YP_273520.1 identified by similarity to SP:P25716; match to protein family HMM PF00106 YP_273521.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273523.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273524.1 identified by match to protein family HMM PF03211 YP_273526.1 identified by match to protein family HMM PF06704 YP_273528.1 identified by match to protein family HMM PF01464 YP_273529.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_273530.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_273531.1 previously known as HrpA or HrpA1; now determined by phylogenetic analysis to belong to subfamily HrpA2 YP_273532.1 identified by match to protein family HMM PF04877 YP_273533.1 identified by match to protein family HMM TIGR02497 YP_273534.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_273536.1 identified by match to protein family HMM PF06188; match to protein family HMM TIGR02499 YP_273537.1 identified by match to protein family HMM PF06266 YP_273539.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_273541.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_273542.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_273543.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_273544.2 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_273545.1 identified by match to protein family HMM PF01052 YP_273549.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026 YP_273550.1 identified by match to protein family HMM TIGR02500 YP_273551.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_273552.1 identified by match to protein family HMM PF07201; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568 YP_273553.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545 YP_273557.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_273558.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_273559.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_273560.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_273561.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_273563.1 identified by match to protein family HMM PF00459 YP_273564.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_273565.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_273566.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 YP_273567.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_273568.1 identified by similarity to SP:P77310; match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_273569.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_273570.2 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_273571.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_273572.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_273573.1 identified by match to protein family HMM PF04384 YP_273574.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_273575.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_273576.1 identified by similarity to GB:AAB40949.1; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521 YP_273578.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_273579.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_273580.1 identified by match to protein family HMM PF00515 YP_273581.1 identified by match to protein family HMM PF01011 YP_273582.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_273583.1 catalyzes the transfer of an amino moiety YP_273584.1 identified by match to protein family HMM PF00795 YP_273586.1 identified by similarity to SP:P11435 YP_273587.1 identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970 YP_273588.1 identified by match to protein family HMM PF01551 YP_273589.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_273591.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_273592.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_273594.1 identified by match to protein family HMM PF00872 YP_273596.1 identified by similarity to GB:AAD24211.1; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409 YP_273597.1 identified by match to protein family HMM PF00383 YP_273598.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_273599.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_273600.1 identified by similarity to GB:AAN66663.1 YP_273601.1 identified by similarity to GB:AAN67073.1; match to protein family HMM PF03734 YP_273602.1 identified by match to protein family HMM PF00293 YP_273603.1 identified by match to protein family HMM PF00293 YP_273604.1 identified by match to protein family HMM PF00132 YP_273605.1 identified by similarity to GB:AAN67077.1; match to protein family HMM PF06945 YP_273607.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_273608.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_273609.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_273610.1 identified by match to protein family HMM PF01578 YP_273611.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_273612.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_273613.1 Essential for efficient processing of 16S rRNA YP_273614.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_273615.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_273616.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_273617.1 identified by match to protein family HMM PF00462 YP_273618.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_273619.2 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_273620.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563 YP_273621.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_273622.1 identified by match to protein family HMM PF00872 YP_273624.1 identified by match to protein family HMM TIGR02285 YP_273625.1 identified by match to protein family HMM PF07152 YP_273626.1 identified by similarity to SP:P21893; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_273627.1 identified by similarity to GB:AAF02538.1; match to protein family HMM PF00724 YP_273628.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273629.1 identified by match to protein family HMM PF01609 YP_273631.1 identified by similarity to SP:P16574; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_273633.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_273634.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04060; match to protein family HMM TIGR01944 YP_273635.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_273636.1 identified by similarity to SP:P21590 YP_273637.1 identified by similarity to SP:P80415; match to protein family HMM PF00313 YP_273638.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_273640.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_273641.1 identified by match to protein family HMM PF00005 YP_273642.1 identified by match to protein family HMM PF04952 YP_273643.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_273644.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_273645.1 identified by match to protein family HMM PF00497 YP_273646.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_273648.1 identified by similarity to SP:P15558; match to protein family HMM PF01804 YP_273649.1 identified by match to protein family HMM PF02810 YP_273650.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01381 YP_273651.1 identified by match to protein family HMM PF07867 YP_273655.1 identified by match to protein family HMM PF02810 YP_273657.1 identified by match to protein family HMM PF06611 YP_273659.1 identified by match to protein family HMM PF06516 YP_273660.1 identified by match to protein family HMM PF03502 YP_273662.1 helicase involved in DNA repair and perhaps also replication YP_273663.1 identified by similarity to PIR:JC2091; match to protein family HMM PF00144 YP_273664.1 identified by match to protein family HMM PF00691 YP_273665.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_273666.1 identified by similarity to SP:P31484 YP_273667.1 identified by similarity to GB:AAN66759.1 YP_273669.1 identified by match to protein family HMM PF00005 YP_273670.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_273671.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_273672.1 identified by match to protein family HMM PF02653 YP_273673.1 identified by match to protein family HMM PF01094 YP_273675.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_273676.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_273677.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_273680.1 identified by match to protein family HMM PF00544 YP_273681.1 identified by match to protein family HMM PF01575 YP_273682.1 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated. YP_273683.1 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids YP_273684.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_273685.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_273686.1 identified by match to protein family HMM PF00560 YP_273687.1 identified by match to protein family HMM PF04339 YP_273688.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_273689.1 identified by match to protein family HMM PF00160 YP_273690.1 identified by match to protein family HMM PF00561 YP_273691.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273694.1 identified by match to protein family HMM PF00353; match to protein family HMM PF05345 YP_273695.1 identified by match to protein family HMM PF00892 YP_273696.1 identified by match to protein family HMM PF00106 YP_273698.1 identified by match to protein family HMM PF00872 YP_273702.1 identified by similarity to GB:AAN87699.1 YP_273704.1 identified by match to protein family HMM PF07081 YP_273705.1 identified by match to protein family HMM TIGR01643 YP_273706.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_273708.1 identified by match to protein family HMM PF03527 YP_273709.1 identified by similarity to GB:CAC44702.1 YP_273710.1 identified by match to protein family HMM PF00106 YP_273714.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_273715.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_273716.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_273717.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_273720.1 identified by similarity to PIR:C83509; match to protein family HMM TIGR02001 YP_273726.1 identified by match to protein family HMM PF05532 YP_273727.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_273728.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_273729.1 identified by match to protein family HMM PF00583 YP_273730.1 identified by match to protein family HMM PF04069 YP_273732.1 identified by match to protein family HMM PF00383 YP_273733.1 identified by match to protein family HMM PF00561 YP_273734.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273735.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_273737.1 identified by similarity to GB:AAN67811.1; match to protein family HMM PF01436; match to protein family HMM PF07995 YP_273738.1 identified by match to protein family HMM PF03413 YP_273739.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_273740.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_273743.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_273744.1 identified by match to protein family HMM PF01609 YP_273746.1 identified by match to protein family HMM PF07690 YP_273747.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273749.1 identified by match to protein family HMM PF04333 YP_273751.1 identified by match to protein family HMM PF04069 YP_273752.1 identified by match to protein family HMM PF04341 YP_273753.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_273756.1 identified by match to protein family HMM PF00106 YP_273757.1 identified by match to protein family HMM PF02694 YP_273759.1 identified by match to protein family HMM PF00872 YP_273760.1 identified by match to protein family HMM PF06794 YP_273761.1 identified by match to protein family HMM PF01546; match to protein family HMM PF05343 YP_273762.1 identified by match to protein family HMM PF00583 YP_273763.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_273764.1 identified by match to protein family HMM PF02278 YP_273765.1 identified by similarity to GB:CAE30251.1 YP_273766.1 identified by match to protein family HMM PF02687 YP_273767.1 identified by match to protein family HMM PF00005 YP_273768.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_273769.1 identified by match to protein family HMM PF03976 YP_273770.1 identified by match to protein family HMM PF04304 YP_273771.1 identified by match to protein family HMM TIGR02292 YP_273772.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_273773.1 identified by similarity to SP:P55740; match to protein family HMM PF01047 YP_273774.1 identified by match to protein family HMM PF01476 YP_273775.1 identified by match to protein family HMM PF01396 YP_273776.1 identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_273777.1 identified by match to protein family HMM PF00082; match to protein family HMM TIGR02601 YP_273778.1 identified by match to protein family HMM PF02899 YP_273779.1 conserved among plant-associated proteobacteria YP_273780.1 identified by similarity to GB:CAD42759.1; match to protein family HMM PF00665 YP_273781.1 identified by match to protein family HMM PF01527 YP_273784.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_273785.1 identified by match to protein family HMM PF01435 YP_273786.1 identified by similarity to GB:AAN66857.1; match to protein family HMM PF01206 YP_273787.1 identified by match to protein family HMM PF01594 YP_273788.1 identified by match to protein family HMM PF00578 YP_273790.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_273792.1 identified by match to protein family HMM PF00753 YP_273793.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_273794.1 identified by match to protein family HMM PF05016 YP_273796.1 identified by similarity to GB:AAC38406.1 YP_273797.2 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_273798.1 identified by match to protein family HMM PF00884; match to protein family HMM PF08019 YP_273799.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_273800.1 identified by similarity to GB:AAN70163.1; match to protein family HMM PF05166 YP_273801.1 identified by match to protein family HMM PF02826 YP_273802.1 identified by match to protein family HMM PF00881 YP_273803.1 identified by similarity to SP:Q92R94; match to protein family HMM PF05779 YP_273805.1 identified by similarity to GB:AAO57382.1 YP_273806.1 identified by similarity to SP:P12375; match to protein family HMM PF05275 YP_273807.1 identified by match to protein family HMM PF01844 YP_273808.1 identified by match to protein family HMM PF00027 YP_273809.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_273811.1 identified by match to protein family HMM PF00310 YP_273816.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_273817.1 identified by match to protein family HMM PF05118 YP_273818.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_273819.1 identified by match to protein family HMM PF01553; match to protein family HMM PF07690 YP_273820.1 identified by match to protein family HMM PF01758 YP_273821.1 Required for efficient pilin antigenic variation YP_273823.1 identified by match to protein family HMM PF02515 YP_273824.1 identified by match to protein family HMM PF00903 YP_273825.1 identified by match to protein family HMM PF00375 YP_273826.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_273827.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_273830.1 identified by match to protein family HMM PF00254; match to protein family HMM PF01346 YP_273831.1 identified by match to protein family HMM PF06803 YP_273832.1 identified by match to protein family HMM PF01381 YP_273834.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990 YP_273835.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_273836.1 identified by match to protein family HMM PF00107 YP_273837.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_273838.1 identified by match to protein family HMM PF00005 YP_273839.1 identified by match to protein family HMM PF00528 YP_273840.1 identified by match to protein family HMM PF00528 YP_273843.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_273844.1 identified by match to protein family HMM PF00872 YP_273845.1 catalyzes the removal of amino acids from the N termini of peptides YP_273846.1 identified by match to protein family HMM PF01609 YP_273848.1 identified by match to protein family HMM PF01609 YP_273849.1 identified by match to protein family HMM PF00849 YP_273850.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_273851.1 identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_273852.1 blocks the formation of polar Z-ring septums YP_273853.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_273854.1 identified by match to protein family HMM PF01734 YP_273855.1 identified by match to protein family HMM PF00355 YP_273857.1 identified by match to protein family HMM PF00701 YP_273860.1 identified by match to protein family HMM PF00765 YP_273861.1 identified by match to protein family HMM PF00196; match to protein family HMM PF01851; match to protein family HMM PF03472 YP_273862.1 identified by match to protein family HMM PF01047 YP_273863.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_273865.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_273866.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_273867.1 identified by match to protein family HMM PF00005 YP_273868.1 identified by match to protein family HMM PF01061 YP_273869.1 identified by match to protein family HMM PF01618 YP_273870.1 identified by match to protein family HMM PF02472 YP_273871.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_273872.1 identified by match to protein family HMM PF03966 YP_273873.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_273874.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_273875.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_273876.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_273877.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_273878.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706 YP_273879.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_273880.1 identified by match to protein family HMM PF02620 YP_273881.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_273882.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_273883.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_273884.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_273885.1 carries the fatty acid chain in fatty acid biosynthesis YP_273886.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_273887.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_273888.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_273889.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_273890.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_273891.1 identified by similarity to GB:AAG06348.1; match to protein family HMM PF07238 YP_273892.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_273893.1 identified by match to protein family HMM PF01810 YP_273894.1 identified by match to protein family HMM PF00440 YP_273896.1 identified by similarity to GB:AAO57288.1; match to protein family HMM PF06938 YP_273897.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_273898.1 identified by match to protein family HMM PF01476 YP_273899.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_273900.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_273901.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_273902.1 identified by match to protein family HMM TIGR01499 YP_273903.1 identified by match to protein family HMM PF05036 YP_273904.1 identified by match to protein family HMM PF02674 YP_273905.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_273906.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_273907.1 identified by match to protein family HMM PF00106 YP_273909.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_273910.1 identified by match to protein family HMM PF00165 YP_273911.1 identified by match to protein family HMM PF00795 YP_273912.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_273914.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_273916.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_273917.1 identified by match to protein family HMM PF00160 YP_273918.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_273919.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_273920.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_273921.1 identified by match to protein family HMM PF00005 YP_273922.1 identified by match to protein family HMM PF00005 YP_273923.1 identified by match to protein family HMM PF00528 YP_273924.1 identified by match to protein family HMM PF00528 YP_273927.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_273928.1 identified by similarity to GB:AAT38376.1 YP_273934.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_273935.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_273936.1 binds and unfolds substrates as part of the ClpXP protease YP_273937.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_273938.1 identified by match to protein family HMM PF00216 YP_273939.1 identified by match to protein family HMM PF00639 YP_273940.1 identified by match to protein family HMM PF00106 YP_273941.1 identified by match to protein family HMM PF00005 YP_273942.1 identified by match to protein family HMM PF00528 YP_273943.1 identified by match to protein family HMM PF00528 YP_273944.1 identified by match to protein family HMM PF00496 YP_273945.1 identified by match to protein family HMM PF00496 YP_273946.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 YP_273947.1 identified by similarity to SP:Q47677; match to protein family HMM PF00753 YP_273949.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_273952.1 3'-5' exonuclease of DNA polymerase III YP_273953.1 identified by match to protein family HMM PF00583 YP_273955.1 identified by match to protein family HMM PF03358 YP_273957.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_273958.1 identified by match to protein family HMM PF00378 YP_273959.1 identified by match to protein family HMM PF07690 YP_273960.1 identified by match to protein family HMM PF00529 YP_273961.1 identified by match to protein family HMM PF01384 YP_273962.1 identified by match to protein family HMM PF01544 YP_273963.1 identified by match to protein family HMM PF00248 YP_273964.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273965.1 identified by match to protein family HMM PF00440 YP_273966.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_273967.1 identified by match to protein family HMM PF00440 YP_273969.1 identified by match to protein family HMM PF01022 YP_273970.1 identified by match to protein family HMM PF01609 YP_273971.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_273972.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273973.1 identified by match to protein family HMM PF00903 YP_273974.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_273975.1 identified by match to protein family HMM PF04244 YP_273978.1 identified by similarity to SP:Q44091; match to protein family HMM PF01436 YP_273979.1 identified by match to protein family HMM PF07690 YP_273980.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273981.1 identified by match to protein family HMM PF00248 YP_273982.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_273983.1 identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583 YP_273984.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_273985.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_273986.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01733 YP_273987.1 identified by match to protein family HMM PF02668 YP_273988.1 identified by match to protein family HMM PF00583 YP_273991.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_273992.1 identified by match to protein family HMM PF00892 YP_273993.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_273994.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_273995.1 identified by match to protein family HMM PF01402 YP_273996.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_273997.1 identified by match to protein family HMM PF01037 YP_273998.1 identified by match to protein family HMM PF05661 YP_273999.1 identified by match to protein family HMM PF06181 YP_274000.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_274001.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_274002.1 identified by similarity to GB:CAG20648.1 YP_274003.1 identified by match to protein family HMM PF01522 YP_274004.1 identified by match to protein family HMM PF00576 YP_274005.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_274006.1 Catalyzes the deamination of guanine YP_274007.1 identified by match to protein family HMM PF02625 YP_274008.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_274009.1 identified by similarity to GB:CAA04469.1; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450 YP_274010.1 identified by match to protein family HMM PF00392 YP_274011.1 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_274012.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane YP_274013.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_274015.1 identified by match to protein family HMM PF00583 YP_274016.1 identified by match to protein family HMM PF00924 YP_274017.1 identified by similarity to GB:AAF77194.1; match to protein family HMM PF04185; match to protein family HMM TIGR01409 YP_274019.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_274020.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_274021.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs YP_274022.2 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate YP_274024.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02204 YP_274025.1 identified by similarity to GB:AAN69828.1; match to protein family HMM PF06865 YP_274026.1 identified by match to protein family HMM PF00929 YP_274029.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_274030.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_274031.1 identified by match to protein family HMM PF00107 YP_274032.1 identified by similarity to SP:P76008; match to protein family HMM PF02016 YP_274033.1 identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_274034.1 identified by match to protein family HMM PF01047 YP_274035.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_274036.1 identified by match to protein family HMM PF07007 YP_274038.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_274039.1 identified by match to protein family HMM PF01713 YP_274041.1 identified by match to protein family HMM PF00857 YP_274042.1 involved in methylation of ribosomal protein L3 YP_274044.1 identified by similarity to GB:AAS11368.1 YP_274045.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_274046.1 identified by match to protein family HMM PF07690 YP_274047.1 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway YP_274048.1 identified by match to protein family HMM PF03079 YP_274049.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR01691 YP_274051.1 identified by match to protein family HMM PF00196 YP_274053.1 identified by match to protein family HMM PF00023 YP_274055.1 identified by match to protein family HMM PF02535 YP_274057.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_274058.1 identified by match to protein family HMM PF00884 YP_274061.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174 YP_274062.1 identified by similarity to GB:CAD14824.1; match to protein family HMM PF04168 YP_274063.1 identified by match to protein family HMM PF01841 YP_274064.1 identified by match to protein family HMM PF05036 YP_274065.1 identified by match to protein family HMM PF01544 YP_274066.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_274068.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118 YP_274070.1 identified by similarity to GB:AAN68847.1 YP_274071.1 identified by similarity to SP:P00083; match to protein family HMM PF00034 YP_274073.1 identified by match to protein family HMM PF07883 YP_274076.1 identified by similarity to GB:AAT35126.1; match to protein family HMM PF01527 YP_274077.1 identified by similarity to GB:AAO56533.1; match to protein family HMM PF00665 YP_274078.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_274079.1 identified by match to protein family HMM PF00857 YP_274080.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434 YP_274082.1 identified by similarity to SP:P30958; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_274083.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_274084.1 identified by match to protein family HMM PF07690 YP_274085.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_274086.1 identified by match to protein family HMM PF02424 YP_274087.1 catalyzes the conversion of NADPH to NADH YP_274088.1 identified by match to protein family HMM PF03009 YP_274090.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_274091.1 identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_274092.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_274093.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_274095.1 identified by similarity to GB:CAE32398.1 YP_274096.1 identified by match to protein family HMM PF04333 YP_274098.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_274099.1 identified by match to protein family HMM PF01740 YP_274100.1 identified by similarity to SP:P30148; match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_274101.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_274102.1 catalyzes the release of C-terminal glutamate residues from N-acylating moieties YP_274103.1 identified by similarity to GB:AAG39350.1; match to protein family HMM PF00717 YP_274105.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_274106.1 identified by similarity to GB:BAC13227.1 YP_274108.1 identified by match to protein family HMM PF01609 YP_274109.1 identified by match to protein family HMM PF05489 YP_274110.1 identified by match to protein family HMM PF05954 YP_274111.1 identified by match to protein family HMM PF00182 YP_274112.1 identified by match to protein family HMM PF02086 YP_274113.1 identified by match to protein family HMM PF05638 YP_274114.1 identified by similarity to GB:AAN70452.1 YP_274115.1 identified by match to protein family HMM PF00872 YP_274116.1 identified by similarity to GB:AAN68647.1 YP_274117.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594 YP_274118.1 identified by similarity to GB:BAA36238.1 YP_274121.1 identified by match to protein family HMM PF00182 YP_274122.1 identified by match to protein family HMM PF02086 YP_274124.1 identified by match to protein family HMM PF00353 YP_274125.1 identified by match to protein family HMM PF00589 YP_274126.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_274127.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_274128.1 identified by match to protein family HMM PF03929 YP_274130.1 identified by match to protein family HMM PF00872 YP_274131.1 identified by match to protein family HMM PF00582 YP_274132.1 identified by match to protein family HMM PF00072 YP_274133.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229 YP_274134.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_274135.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_274136.1 identified by match to protein family HMM TIGR02246 YP_274137.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_274138.1 identified by match to protein family HMM PF00975 YP_274139.1 catalyzes the specific recognition and activation of amino acids during peptide synthesis; involved in the biosynthesis of the peptide chain of pyoverdines YP_274140.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_274141.1 identified by match to protein family HMM PF03621 YP_274143.1 identified by match to protein family HMM PF00950 YP_274144.1 identified by match to protein family HMM PF00005 YP_274145.1 identified by match to protein family HMM PF01297 YP_274148.1 identified by similarity to GB:AAO17444.1 YP_274149.1 identified by match to protein family HMM PF03413; match to protein family HMM PF03929 YP_274151.1 identified by similarity to GB:AAO55664.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_274152.1 identified by similarity to GB:AAO55665.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_274153.1 identified by similarity to GB:AAO55666.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_274154.1 identified by similarity to GB:AAO55667.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_274155.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_274156.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_274157.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01194 YP_274158.1 identified by similarity to GB:AAO17436.1; match to protein family HMM PF03781 YP_274159.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01409 YP_274160.1 identified by match to protein family HMM PF01244 YP_274161.1 identified by match to protein family HMM TIGR01409 YP_274162.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_274163.1 identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687 YP_274164.1 identified by similarity to SP:P75830; match to protein family HMM TIGR01730 YP_274165.1 identified by similarity to SP:P29958; match to protein family HMM PF01804 YP_274167.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_274169.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_274170.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_274171.1 identified by similarity to GB:AAN67595.1 YP_274172.1 identified by match to protein family HMM PF01207 YP_274173.1 identified by match to protein family HMM PF00011 YP_274174.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_274175.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274176.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_274177.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_274178.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_274179.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_274180.1 identified by similarity to SP:P31459; match to protein family HMM PF05035 YP_274181.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_274182.1 identified by similarity to SP:P31458; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_274183.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893 YP_274184.1 identified by match to protein family HMM PF01614 YP_274185.1 identified by match to protein family HMM PF00107 YP_274186.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_274187.1 identified by similarity to SP:Q16134; match to protein family HMM PF05187 YP_274188.1 identified by similarity to SP:P38975; match to protein family HMM PF01012 YP_274189.1 identified by similarity to SP:P38974; match to protein family HMM PF00766 YP_274192.1 identified by match to protein family HMM PF00691 YP_274193.1 identified by match to protein family HMM PF00392 YP_274195.1 identified by match to protein family HMM PF03692 YP_274198.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_274200.1 identified by similarity to SP:P10446; match to protein family HMM PF01127 YP_274202.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_274203.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_274204.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_274205.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_274206.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_274207.1 catalyzes the interconversion of succinyl-CoA and succinate YP_274208.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_274209.2 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_274211.1 molecular chaperone YP_274212.1 identified by match to protein family HMM PF01738 YP_274213.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_274214.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_274215.1 identified by match to protein family HMM PF00872 YP_274216.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_274218.1 identified by similarity to SP:P76502; match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_274219.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_274221.1 identified by similarity to GB:AAM73852.1; match to protein family HMM PF00561 YP_274223.1 identified by match to protein family HMM PF01594 YP_274224.1 identified by match to protein family HMM PF00036 YP_274225.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_274226.1 identified by similarity to GB:AAC44475.1; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_274228.1 identified by match to protein family HMM PF01609 YP_274231.1 identified by match to protein family HMM PF00419 YP_274232.1 identified by match to protein family HMM PF00577 YP_274233.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_274234.1 identified by similarity to SP:P37921; match to protein family HMM PF00419 YP_274235.1 identified by match to protein family HMM PF00872 YP_274236.1 identified by match to protein family HMM PF00196 YP_274237.1 identified by match to protein family HMM TIGR02115 YP_274238.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_274239.1 identified by match to protein family HMM PF00122; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497 YP_274240.1 identified by match to protein family HMM TIGR01494 YP_274241.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_274242.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_274243.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_274245.1 identified by match to protein family HMM PF07726 YP_274246.1 identified by similarity to PIR:G83287; match to protein family HMM PF01882 YP_274247.1 identified by match to protein family HMM PF01841 YP_274248.1 identified by match to protein family HMM PF05235 YP_274251.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_274252.1 identified by similarity to SP:P27859; match to protein family HMM PF01026 YP_274253.1 identified by match to protein family HMM PF01464 YP_274255.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_274256.1 identified by match to protein family HMM PF02687; match to protein family HMM PF05137 YP_274257.1 identified by match to protein family HMM PF00005 YP_274258.1 identified by match to protein family HMM PF00657 YP_274260.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734 YP_274262.1 identified by similarity to GB:CAE33876.1 YP_274263.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_274264.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_274265.1 identified by match to protein family HMM PF06189 YP_274266.1 identified by match to protein family HMM PF00582 YP_274267.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_274268.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_274269.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity YP_274270.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553 YP_274271.1 identified by match to protein family HMM TIGR02291 YP_274272.1 klk YP_274273.1 identified by match to protein family HMM PF05618 YP_274274.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_274275.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_274276.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_274277.1 Catalyzes the conversion of citrate to isocitrate YP_274278.1 identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334 YP_274279.1 identified by match to protein family HMM PF03618 YP_274280.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_274282.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_274283.1 identified by match to protein family HMM PF01544 YP_274285.1 identified by match to protein family HMM PF05552 YP_274286.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression YP_274287.1 identified by match to protein family HMM PF00691; match to protein family HMM PF02412; match to protein family HMM PF05736 YP_274288.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_274289.1 identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_274290.1 identified by match to protein family HMM PF00070 YP_274291.1 identified by match to protein family HMM PF00069 YP_274292.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_274293.1 identified by match to protein family HMM PF02435 YP_274294.1 identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_274296.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_274297.1 identified by match to protein family HMM PF04957 YP_274298.2 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_274299.1 identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF03924; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_274300.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_274301.1 identified by similarity to GB:AAN67713.1; match to protein family HMM PF04320 YP_274302.1 identified by match to protein family HMM PF01627 YP_274303.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_274304.1 identified by similarity to GB:AAO57398.1 YP_274305.1 identified by match to protein family HMM PF00182 YP_274306.1 identified by similarity to GB:CAD17629.1; match to protein family HMM PF00872 YP_274307.1 dGTPase type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_274310.1 identified by match to protein family HMM PF05957 YP_274312.1 identified by similarity to SP:P26502; match to protein family HMM PF01757 YP_274313.1 identified by similarity to PIR:H83266 YP_274314.1 identified by similarity to SP:P52668; match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424 YP_274315.1 identified by similarity to SP:P00437; match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_274316.1 identified by similarity to SP:P00436; match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_274317.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00895 YP_274318.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_274319.1 identified by similarity to SP:P20370; match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_274320.1 identified by match to protein family HMM PF03573 YP_274321.1 identified by match to protein family HMM PF00892 YP_274323.1 identified by match to protein family HMM PF07690 YP_274324.1 identified by similarity to SP:P80064; match to protein family HMM PF00903 YP_274325.1 identified by match to protein family HMM PF00440 YP_274326.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_274327.1 identified by match to protein family HMM PF00849 YP_274328.1 identified by match to protein family HMM PF06004 YP_274329.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_274330.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_274331.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_274332.1 identified by match to protein family HMM PF00535 YP_274333.1 identified by match to protein family HMM PF02254; match to protein family HMM TIGR00932 YP_274336.1 identified by match to protein family HMM PF04773 YP_274337.1 identified by match to protein family HMM PF02615 YP_274339.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_274341.1 identified by match to protein family HMM PF04231 YP_274342.1 identified by match to protein family HMM PF07867 YP_274343.1 identified by match to protein family HMM PF06004 YP_274344.1 identified by match to protein family HMM PF00532 YP_274345.1 identified by match to protein family HMM PF00005 YP_274346.1 identified by match to protein family HMM PF02653 YP_274347.1 identified by similarity to SP:P25551; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_274348.1 identified by similarity to SP:P05054; match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_274349.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_274350.1 identified by match to protein family HMM PF01156 YP_274351.1 identified by similarity to GB:AAN68073.1 YP_274352.1 identified by similarity to SP:P72188; match to protein family HMM PF00313 YP_274354.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_274355.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_274356.1 identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_274357.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_274358.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_274359.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_274360.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_274361.1 identified by match to protein family HMM PF00376 YP_274367.1 identified by match to protein family HMM PF00196 YP_274368.1 identified by match to protein family HMM PF07867 YP_274369.1 identified by match to protein family HMM PF00717 YP_274370.1 identified by similarity to GB:AAN25290.1 YP_274374.1 identified by match to protein family HMM PF00872 YP_274375.1 identified by match to protein family HMM PF00682 YP_274376.1 identified by match to protein family HMM PF00180 YP_274377.1 identified by similarity to GB:CAE16450.1; match to protein family HMM PF03737 YP_274378.1 identified by match to protein family HMM PF01613 YP_274380.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF03060 YP_274383.1 identified by match to protein family HMM PF00296 YP_274384.1 identified by match to protein family HMM PF00296 YP_274385.1 identified by match to protein family HMM PF07690 YP_274386.1 identified by match to protein family HMM PF00872 YP_274387.1 identified by similarity to GB:CAE33393.1 YP_274388.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_274389.1 identified by match to protein family HMM TIGR01708 YP_274391.1 identified by similarity to GB:AAD05179.1; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_274392.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_274393.1 identified by similarity to PIR:A83561 YP_274395.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_274396.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_274397.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_274398.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_274399.1 identified by match to protein family HMM PF00353; match to protein family HMM PF00413 YP_274400.1 identified by match to protein family HMM PF01425 YP_274401.1 identified by match to protein family HMM PF00455 YP_274404.1 identified by match to protein family HMM PF00474 YP_274405.1 identified by match to protein family HMM PF02678 YP_274406.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_274408.1 identified by match to protein family HMM PF03886 YP_274411.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868 YP_274413.1 identified by match to protein family HMM PF05957 YP_274416.1 identified by match to protein family HMM PF00440 YP_274417.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691 YP_274421.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_274422.1 identified by match to protein family HMM PF00378 YP_274423.1 identified by match to protein family HMM TIGR01646 YP_274424.1 identified by match to protein family HMM PF01709 YP_274425.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00560 YP_274427.1 identified by match to protein family HMM PF07690 YP_274428.1 identified by match to protein family HMM PF00246 YP_274430.1 identified by match to protein family HMM PF01037 YP_274431.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_274432.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_274433.1 identified by match to protein family HMM PF01890 YP_274434.1 identified by match to protein family HMM TIGR02458 YP_274435.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_274436.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_274437.1 identified by match to protein family HMM PF01078 YP_274440.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_274442.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_274443.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_274444.1 identified by match to protein family HMM PF06961 YP_274445.1 identified by match to protein family HMM PF04237 YP_274446.1 identified by similarity to GB:AAL02408.; match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_274447.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274448.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_274449.1 identified by similarity to GB:AAO56622.1 YP_274450.1 identified by match to protein family HMM PF00535 YP_274451.1 identified by similarity to GB:AAM40938.1 YP_274452.1 identified by match to protein family HMM PF02585 YP_274454.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_274456.1 identified by match to protein family HMM TIGR02401 YP_274457.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_274458.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_274459.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_274460.1 identified by match to protein family HMM PF00583 YP_274462.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_274463.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_274464.1 identified by similarity to SP:P05050; match to protein family HMM PF03171 YP_274469.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_274470.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_274471.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_274472.1 identified by similarity to GB:BAB83833.1 YP_274473.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_274474.1 identified by similarity to SP:P19479; match to protein family HMM PF00578 YP_274475.1 identified by similarity to SP:O06465; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_274476.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_274479.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_274480.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_274481.1 identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_274482.1 identified by similarity to GB:CAA67866.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_274483.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_274484.1 identified by match to protein family HMM PF00005 YP_274485.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274486.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274487.1 identified by match to protein family HMM PF00497 YP_274488.1 identified by match to protein family HMM PF00005 YP_274489.1 identified by match to protein family HMM PF02653; match to protein family HMM PF06715 YP_274491.1 identified by match to protein family HMM PF05488 YP_274494.1 identified by match to protein family HMM PF01609 YP_274496.1 identified by match to protein family HMM PF01609 YP_274497.1 identified by match to protein family HMM PF00005 YP_274498.1 identified by match to protein family HMM PF00528 YP_274499.1 identified by match to protein family HMM PF00528 YP_274500.1 identified by match to protein family HMM PF00496; match to protein family HMM PF02756 YP_274501.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274502.1 identified by match to protein family HMM PF00724 YP_274503.1 identified by match to protein family HMM PF02583 YP_274504.1 identified by match to protein family HMM PF03824 YP_274505.1 identified by match to protein family HMM PF00903 YP_274506.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274507.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274508.1 identified by match to protein family HMM PF05721 YP_274509.1 identified by match to protein family HMM PF04069 YP_274510.1 identified by match to protein family HMM PF00440 YP_274511.1 identified by match to protein family HMM PF07690 YP_274513.1 identified by match to protein family HMM PF01609 YP_274514.1 identified by similarity to GB:CAA07694.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274515.1 identified by match to protein family HMM PF00107 YP_274516.1 identified by similarity to GB:AAC38629.1 YP_274517.1 identified by match to protein family HMM PF00872 YP_274518.1 identified by similarity to GB:AAC38628.1 YP_274520.1 identified by match to protein family HMM PF00392 YP_274521.1 identified by match to protein family HMM PF06733 YP_274522.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_274523.1 identified by match to protein family HMM PF00639 YP_274524.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_274525.1 identified by match to protein family HMM PF00005 YP_274526.1 identified by match to protein family HMM PF00528 YP_274527.1 identified by match to protein family HMM PF00528 YP_274528.1 identified by match to protein family HMM PF00496 YP_274529.1 identified by match to protein family HMM PF00639 YP_274530.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_274531.1 identified by similarity to GB:AAQ59824.1 YP_274533.1 identified by similarity to SP:Q52376; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_274534.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_274535.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_274537.1 identified by match to protein family HMM PF00532 YP_274539.1 identified by match to protein family HMM PF01261 YP_274540.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_274541.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_274543.1 identified by match to protein family HMM PF00487 YP_274544.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02377 YP_274545.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_274549.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274550.1 identified by match to protein family HMM PF00005 YP_274551.1 identified by similarity to GB:AAL14831.1; match to protein family HMM PF01593 YP_274553.1 identified by match to protein family HMM PF01042 YP_274555.1 identified by match to protein family HMM PF02653 YP_274556.1 with XylFH is part of the high affinity xylose ABC transporter YP_274557.1 catalyzes the interconversion of D-xylose to D-xylulose YP_274558.1 identified by match to protein family HMM PF00165 YP_274559.1 identified by match to protein family HMM PF00112 YP_274561.1 identified by match to protein family HMM PF06903 YP_274562.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_274563.1 identified by match to protein family HMM PF00532 YP_274564.1 identified by match to protein family HMM PF00005 YP_274565.1 identified by match to protein family HMM PF02653 YP_274566.1 identified by match to protein family HMM PF02653 YP_274567.1 identified by match to protein family HMM PF08028 YP_274569.1 identified by match to protein family HMM PF00005 YP_274570.1 identified by match to protein family HMM PF02653 YP_274571.1 identified by match to protein family HMM PF02653 YP_274573.1 identified by match to protein family HMM PF00005 YP_274574.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_274575.1 identified by similarity to GB:AAO58611.1 YP_274576.1 identified by similarity to SP:P54995 YP_274577.1 identified by similarity to SP:P30846; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_274578.1 identified by similarity to SP:P30847; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_274579.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_274580.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_274581.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_274582.1 identified by similarity to GB:AAO07864.1; match to protein family HMM PF07519 YP_274584.1 identified by match to protein family HMM PF00857 YP_274592.1 identified by match to protein family HMM PF00717 YP_274596.1 identified by match to protein family HMM PF00182 YP_274601.1 identified by match to protein family HMM PF01028 YP_274602.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00638; match to protein family HMM TIGR02142 YP_274603.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_274604.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_274605.1 identified by match to protein family HMM PF03060 YP_274606.1 identified by match to protein family HMM PF00440 YP_274607.1 identified by match to protein family HMM PF00107 YP_274609.1 identified by similarity to GB:CAA55226.1; match to protein family HMM PF00589; match to protein family HMM PF02899 YP_274610.1 identified by match to protein family HMM PF07883 YP_274611.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_274612.1 identified by match to protein family HMM PF01266 YP_274613.1 identified by match to protein family HMM PF01094 YP_274614.1 identified by similarity to SP:Q51548 YP_274615.1 identified by match to protein family HMM PF00291; match to protein family HMM PF02423 YP_274617.1 identified by match to protein family HMM PF01810 YP_274618.1 identified by match to protein family HMM PF00465 YP_274619.1 identified by match to protein family HMM PF00144 YP_274620.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_274621.1 identified by match to protein family HMM PF01965 YP_274622.1 identified by match to protein family HMM PF00126 YP_274624.1 identified by match to protein family HMM TIGR02455 YP_274625.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02830; match to protein family HMM PF02954; match to protein family HMM PF06505; match to protein family HMM TIGR01199 YP_274626.1 identified by match to protein family HMM PF00171 YP_274627.1 catalyzes the formation of 5-alpha-androstane-3,17-dione from androsterone; Acts on other 3-alpha-hydroxysteroids and on 9-, 11- and 15-hydroxyprostaglandin. YP_274629.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_274630.1 identified by match to protein family HMM PF01047 YP_274631.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_274632.1 identified by similarity to GB:CAA72286.1; match to protein family HMM PF00171 YP_274633.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_274634.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_274636.1 identified by match to protein family HMM PF01042 YP_274637.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274639.1 identified by match to protein family HMM PF00872 YP_274642.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274643.1 identified by match to protein family HMM PF03746 YP_274644.1 identified by match to protein family HMM PF02682 YP_274645.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_274646.1 identified by match to protein family HMM PF00440 YP_274647.1 identified by match to protein family HMM PF00872 YP_274648.1 identified by match to protein family HMM PF03573 YP_274649.1 identified by match to protein family HMM PF07690 YP_274650.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_274651.1 Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation YP_274652.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_274653.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_274654.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_274655.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_274657.1 identified by match to protein family HMM PF03746 YP_274658.1 identified by match to protein family HMM PF00106; match to protein family HMM PF07993 YP_274659.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274660.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274661.1 identified by match to protein family HMM PF00005 YP_274662.1 identified by match to protein family HMM PF00497 YP_274664.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_274665.1 identified by match to protein family HMM PF07690 YP_274666.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274668.1 identified by match to protein family HMM PF01156 YP_274669.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_274670.1 identified by similarity to GB:AAC27105.1; match to protein family HMM PF00392; match to protein family HMM PF07729 YP_274671.1 identified by similarity to SP:O54037; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_274672.1 identified by similarity to SP:O05616; match to protein family HMM PF00355 YP_274673.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274674.1 identified by match to protein family HMM PF07722 YP_274675.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_274676.1 identified by similarity to SP:P09147; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_274678.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031 YP_274680.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_274681.1 identified by match to protein family HMM PF01609 YP_274683.1 identified by match to protein family HMM PF00583 YP_274685.1 identified by match to protein family HMM PF02498 YP_274686.1 identified by match to protein family HMM PF01590 YP_274687.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_274688.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274689.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_274690.1 identified by similarity to GB:AAN68008.1 YP_274691.1 identified by match to protein family HMM PF00571 YP_274692.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_274693.1 identified by match to protein family HMM PF02146 YP_274694.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_274696.1 identified by match to protein family HMM PF04055 YP_274698.1 identified by match to protein family HMM PF00005 YP_274699.1 identified by match to protein family HMM PF00950 YP_274700.1 identified by match to protein family HMM PF01297 YP_274701.1 identified by similarity to SP:P05149; match to protein family HMM PF01263 YP_274702.1 identified by match to protein family HMM PF03758 YP_274703.1 identified by match to protein family HMM PF00532 YP_274704.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_274705.2 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_274707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_274708.1 identified by match to protein family HMM PF00324 YP_274710.1 identified by similarity to GB:CAG23215.1 YP_274715.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_274716.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_274717.1 identified by match to protein family HMM PF00263 YP_274719.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_274723.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_274726.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026 YP_274727.1 identified by match to protein family HMM PF01609 YP_274730.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_274731.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_274732.1 identified by match to protein family HMM PF01313 YP_274733.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_274734.1 identified by match to protein family HMM PF01312 YP_274735.1 identified by match to protein family HMM PF00486; match to protein family HMM PF06498 YP_274737.1 identified by match to protein family HMM PF00872 YP_274738.1 identified by match to protein family HMM PF03988 YP_274739.1 identified by match to protein family HMM PF00072 YP_274740.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_274741.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799; match to protein family HMM TIGR01409 YP_274743.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_274744.1 identified by match to protein family HMM PF02625 YP_274746.1 identified by match to protein family HMM PF01613 YP_274747.1 identified by match to protein family HMM PF00171 YP_274748.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274749.1 identified by similarity to SP:Q51945; match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_274750.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274751.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_274752.1 identified by match to protein family HMM PF00528 YP_274753.1 identified by match to protein family HMM PF00528 YP_274754.1 identified by match to protein family HMM PF01547 YP_274755.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_274756.1 identified by match to protein family HMM PF07045 YP_274757.1 identified by match to protein family HMM PF00293 YP_274758.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_274759.1 identified by match to protein family HMM PF01613 YP_274760.1 identified by match to protein family HMM PF00171 YP_274761.1 identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561 YP_274762.1 identified by similarity to PIR:AI3076; match to protein family HMM PF06684 YP_274763.1 identified by match to protein family HMM PF01609 YP_274764.1 identified by similarity to SP:P46154; match to protein family HMM PF00107 YP_274765.1 identified by match to protein family HMM PF00106 YP_274766.1 identified by similarity to GB:AAO17204.1; match to protein family HMM PF05593 YP_274767.1 identified by similarity to SP:P25526; match to protein family HMM PF00171 YP_274768.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7 YP_274771.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_274772.1 identified by similarity to GB:AAN68054.1; match to protein family HMM PF04337 YP_274773.1 identified by similarity to GB:BAC47711.1 YP_274774.1 identified by match to protein family HMM PF07690 YP_274775.1 identified by similarity to SP:P10087; match to protein family HMM PF00126 YP_274777.1 identified by match to protein family HMM PF03741 YP_274781.1 identified by match to protein family HMM PF07993 YP_274782.1 identified by match to protein family HMM PF00293 YP_274783.1 identified by match to protein family HMM PF00107 YP_274784.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_274786.1 identified by similarity to GB:AAC04474.1; match to protein family HMM PF00294 YP_274787.1 identified by similarity to SP:P39160; match to protein family HMM PF00370; match to protein family HMM PF01232; match to protein family HMM PF02782; match to protein family HMM PF08125; match to protein family HMM TIGR01312 YP_274788.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_274790.1 identified by match to protein family HMM PF01547 YP_274791.1 identified by similarity to GB:AAC34292.1; match to protein family HMM PF00165 YP_274792.1 catalyzes the formation of precorrin 6x from precorrin 5 YP_274794.1 identified by match to protein family HMM PF00072 YP_274795.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227 YP_274796.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_274797.1 identified by match to protein family HMM PF01339 YP_274798.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_274799.1 identified by match to protein family HMM PF00072 YP_274800.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_274801.1 identified by match to protein family HMM PF06745 YP_274802.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_274803.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates YP_274804.1 identified by match to protein family HMM PF01925 YP_274805.1 identified by similarity to GB:AAB61151.1; match to protein family HMM PF00106 YP_274806.1 identified by match to protein family HMM PF01636 YP_274807.1 identified by match to protein family HMM PF02036 YP_274808.1 identified by match to protein family HMM PF00300 YP_274809.1 SohB; periplasmic protein; member of the peptidase S49 family YP_274810.1 identified by similarity to GB:AAO56230.1; match to protein family HMM PF06073 YP_274811.1 identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_274812.1 identified by match to protein family HMM PF00532 YP_274813.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_274814.1 identified by match to protein family HMM PF06934 YP_274815.1 identified by similarity to SP:P26502; match to protein family HMM PF01757 YP_274816.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01521 YP_274818.1 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA YP_274819.1 identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039 YP_274820.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_274821.1 identified by match to protein family HMM PF00376 YP_274822.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274823.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_274824.1 identified by match to protein family HMM PF00691 YP_274825.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_274827.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_274828.1 identified by match to protein family HMM PF04357 YP_274829.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274830.1 identified by similarity to SP:P37901; match to protein family HMM PF00578 YP_274831.1 identified by similarity to GB:BAC06607.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_274832.1 identified by similarity to GB:BAC06608.1; match to protein family HMM PF00873 YP_274833.1 identified by similarity to GB:BAC06609.1; match to protein family HMM PF00873 YP_274834.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_274835.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_274836.1 identified by match to protein family HMM PF00106 YP_274837.1 identified by match to protein family HMM PF00128 YP_274838.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457 YP_274839.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_274840.1 identified by match to protein family HMM PF07690 YP_274842.1 identified by match to protein family HMM PF00005 YP_274845.1 identified by match to protein family HMM PF00583 YP_274849.1 identified by match to protein family HMM PF01609 YP_274850.1 identified by match to protein family HMM PF00497 YP_274851.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274852.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_274853.1 identified by match to protein family HMM PF00005 YP_274854.1 identified by match to protein family HMM PF01042 YP_274855.1 identified by match to protein family HMM PF01614 YP_274856.1 identified by similarity to GB:AAO56281.1 YP_274857.1 identified by similarity to SP:P45416; match to protein family HMM PF00294 YP_274858.1 identified by match to protein family HMM PF00580 YP_274859.1 identified by match to protein family HMM PF07865 YP_274861.1 identified by match to protein family HMM PF01547 YP_274862.1 identified by match to protein family HMM PF00005 YP_274863.1 identified by match to protein family HMM PF00528 YP_274864.1 identified by match to protein family HMM TIGR01728 YP_274865.1 identified by similarity to GB:AAQ58722.1 YP_274866.1 identified by match to protein family HMM PF00248 YP_274867.1 Represses a number of genes involved in the response to DNA damage YP_274870.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_274871.1 identified by similarity to SP:Q10082 YP_274872.1 identified by match to protein family HMM PF01544 YP_274874.1 identified by match to protein family HMM PF00583 YP_274875.1 identified by match to protein family HMM PF01522 YP_274876.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_274877.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_274878.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274879.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274880.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_274881.1 identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409 YP_274882.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_274883.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274884.1 identified by similarity to PIR:F95875 YP_274885.1 identified by match to protein family HMM PF00528 YP_274886.1 identified by match to protein family HMM PF00528 YP_274887.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_274888.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_274889.1 identified by match to protein family HMM PF00496 YP_274891.1 identified by match to protein family HMM TIGR00778; match to protein family HMM TIGR01926 YP_274892.1 identified by match to protein family HMM PF00149 YP_274894.1 identified by similarity to SP:P27121; match to protein family HMM PF00278; match to protein family HMM PF02784 YP_274897.1 identified by match to protein family HMM PF00202 YP_274898.1 identified by match to protein family HMM PF03364 YP_274899.1 identified by match to protein family HMM PF07993 YP_274900.1 identified by match to protein family HMM PF00487 YP_274902.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_274909.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_274910.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_274912.1 identified by similarity to GB:CAD13743.1 YP_274913.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_274914.1 identified by match to protein family HMM PF02733 YP_274915.1 identified by match to protein family HMM PF00107 YP_274916.1 identified by match to protein family HMM PF00106 YP_274917.1 identified by match to protein family HMM PF00532 YP_274918.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_274919.1 identified by match to protein family HMM PF01609 YP_274921.1 identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171 YP_274922.1 identified by match to protein family HMM PF00440 YP_274925.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_274926.1 identified by match to protein family HMM PF00596 YP_274927.1 identified by match to protein family HMM PF00202 YP_274929.1 identified by match to protein family HMM PF07690 YP_274931.1 identified by match to protein family HMM PF00496 YP_274932.1 identified by match to protein family HMM PF00528 YP_274933.1 identified by match to protein family HMM PF00528 YP_274934.1 identified by match to protein family HMM PF00005 YP_274935.1 identified by match to protein family HMM PF00005 YP_274936.1 identified by match to protein family HMM PF04542 YP_274937.1 identified by match to protein family HMM PF04773 YP_274938.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_274939.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_274940.1 identified by match to protein family HMM PF04183 YP_274941.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_274942.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_274943.1 identified by match to protein family HMM PF04183 YP_274944.1 identified by match to protein family HMM PF03328 YP_274945.1 identified by match to protein family HMM PF04183 YP_274946.1 identified by match to protein family HMM PF01497 YP_274947.1 identified by match to protein family HMM PF01032 YP_274948.1 identified by match to protein family HMM PF01032 YP_274949.1 identified by match to protein family HMM PF00005 YP_274951.1 identified by similarity to GB:AAS83103.1; match to protein family HMM PF03737 YP_274952.1 identified by match to protein family HMM PF00293 YP_274953.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_274954.1 identified by match to protein family HMM PF00149 YP_274955.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_274956.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787 YP_274958.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786 YP_274959.1 identified by similarity to SP:Q06741; match to protein family HMM PF00202 YP_274960.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_274961.1 identified by match to protein family HMM PF07993 YP_274962.1 identified by match to protein family HMM PF00165 YP_274964.1 identified by match to protein family HMM PF00106 YP_274965.1 identified by match to protein family HMM PF00107 YP_274967.1 identified by match to protein family HMM PF00293 YP_274969.1 identified by match to protein family HMM PF03073 YP_274970.1 identified by match to protein family HMM PF00872 YP_274971.1 identified by match to protein family HMM PF01019 YP_274972.1 identified by match to protein family HMM PF00528 YP_274973.1 identified by match to protein family HMM PF00528 YP_274974.1 identified by match to protein family HMM PF00496 YP_274975.1 identified by match to protein family HMM TIGR01727 YP_274976.1 identified by similarity to SP:P38442; match to protein family HMM PF05707 YP_274978.1 identified by similarity to SP:P03672 YP_274979.1 identified by similarity to SP:O80302 YP_274980.1 identified by match to protein family HMM PF01381 YP_274981.1 identified by match to protein family HMM PF00589 YP_274984.1 identified by match to protein family HMM PF01527 YP_274985.1 identified by similarity to GB:AAO56533.1; match to protein family HMM PF00665 YP_274986.1 identified by match to protein family HMM PF00872 YP_274987.1 identified by match to protein family HMM PF01381 YP_274989.1 identified by match to protein family HMM PF01041 YP_274990.1 identified by match to protein family HMM PF00535 YP_274991.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains YP_274992.1 identified by match to protein family HMM PF01522 YP_274993.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A YP_274994.1 identified by similarity to PIR:H83201 YP_274995.1 identified by similarity to SP:Q9HY59 YP_274996.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_274997.1 identified by match to protein family HMM PF02366 YP_275001.1 identified by similarity to GB:BAB60892.1 YP_275002.1 identified by match to protein family HMM PF01609 YP_275003.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_275004.1 identified by match to protein family HMM PF00583 YP_275005.1 identified by match to protein family HMM PF05488 YP_275008.1 identified by match to protein family HMM PF00583 YP_275009.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741 YP_275011.1 identified by match to protein family HMM PF00254 YP_275012.1 identified by similarity to GB:AAN69492.1 YP_275013.1 identified by match to protein family HMM PF06912 YP_275014.1 identified by similarity to GB:AAO56034.1 YP_275015.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275016.1 identified by match to protein family HMM PF01614 YP_275017.1 identified by match to protein family HMM PF00005 YP_275018.1 identified by match to protein family HMM PF00528 YP_275019.1 identified by match to protein family HMM PF00528 YP_275021.1 identified by match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_275022.1 identified by match to protein family HMM PF01266 YP_275023.1 identified by match to protein family HMM PF01547 YP_275025.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_275032.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_275033.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_275034.1 identified by match to protein family HMM PF02472 YP_275035.1 identified by match to protein family HMM PF01618 YP_275036.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_275040.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02987 YP_275041.1 catalyzes the formation of acetate from pyruvate YP_275042.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_275043.1 identified by match to protein family HMM PF01638 YP_275044.1 identified by similarity to SP:P39315; match to protein family HMM PF07993 YP_275046.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_275047.1 identified by match to protein family HMM PF01810 YP_275052.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_275053.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_275054.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_275056.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_275057.1 identified by match to protein family HMM PF01040 YP_275058.1 identified by match to protein family HMM PF00106 YP_275059.1 identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374 YP_275061.1 identified by match to protein family HMM PF00723 YP_275062.1 identified by match to protein family HMM PF00106 YP_275063.1 identified by similarity to SP:Q46933; match to protein family HMM PF00248 YP_275064.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_275065.1 identified by similarity to PIR:G83309; match to protein family HMM PF07759 YP_275066.1 catalyzes the formation of glutamate from glutamine YP_275067.1 identified by match to protein family HMM PF00596 YP_275069.1 identified by match to protein family HMM PF02472 YP_275070.1 identified by match to protein family HMM PF01618 YP_275071.1 identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_275072.1 identified by match to protein family HMM PF04314 YP_275073.1 identified by match to protein family HMM PF02630 YP_275074.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_275075.1 identified by match to protein family HMM PF00165 YP_275076.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_275077.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_275078.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_275079.1 identified by similarity to GB:AAO56106.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_275080.1 identified by match to protein family HMM PF07690 YP_275081.1 identified by similarity to GB:AAO56104.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_275082.1 identified by similarity to GB:AAO56103.1; match to protein family HMM PF07414; match to protein family HMM TIGR01761 YP_275083.1 identified by similarity to GB:AAO56102.1; match to protein family HMM PF00975 YP_275084.1 identified by similarity to GB:AAO56101.1; match to protein family HMM PF00501 YP_275085.1 catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate. YP_275086.1 involved in the conversion of chorismate to salicylate YP_275088.1 identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_275089.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_275090.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_275091.1 identified by match to protein family HMM PF00296 YP_275093.1 identified by match to protein family HMM PF00296 YP_275094.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_275095.1 identified by match to protein family HMM PF01645 YP_275096.1 identified by match to protein family HMM PF01493 YP_275097.1 identified by match to protein family HMM PF00310 YP_275098.1 identified by similarity to SP:P31592; match to protein family HMM PF00120; match to protein family HMM PF03951 YP_275099.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_275101.1 identified by match to protein family HMM PF00132 YP_275102.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_275103.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275108.2 identified by similarity to SP:Q59086; match to protein family HMM PF01011 YP_275109.1 required for the use of phosphonates and phosphite as phosphorus sources YP_275110.1 identified by similarity to SP:P16690; match to protein family HMM TIGR02322 YP_275111.1 identified by similarity to SP:P16689; match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_275112.1 identified by similarity to SP:P16679; match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_275113.1 identified by similarity to SP:P16678; match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_275114.1 identified by similarity to SP:P16688; match to protein family HMM PF06007 YP_275115.1 identified by similarity to SP:P16687; match to protein family HMM PF05861 YP_275116.1 identified by similarity to SP:P16686; match to protein family HMM PF05845 YP_275117.1 identified by similarity to SP:P16685; match to protein family HMM PF06754 YP_275118.1 identified by similarity to SP:P16684; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325 YP_275119.1 identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_275120.1 identified by similarity to SP:P16682; match to protein family HMM TIGR01098 YP_275121.1 identified by similarity to SP:P16677; match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_275122.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_275124.1 decatenates replicating daughter chromosomes YP_275125.1 identified by match to protein family HMM PF01042 YP_275127.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275128.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275129.1 identified by match to protein family HMM PF01223 YP_275130.1 identified by match to protein family HMM PF00532 YP_275131.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275132.1 identified by match to protein family HMM PF06724 YP_275133.1 identified by match to protein family HMM PF03758; match to protein family HMM TIGR01409 YP_275135.1 identified by match to protein family HMM PF06945 YP_275136.1 identified by match to protein family HMM PF07690 YP_275137.1 identified by match to protein family HMM PF00795 YP_275139.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_275141.1 identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655 YP_275142.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_275143.1 identified by similarity to SP:P40875; match to protein family HMM PF01266 YP_275144.1 identified by similarity to SP:Q46336 YP_275145.1 identified by match to protein family HMM PF01571; match to protein family HMM PF07992 YP_275147.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_275148.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275149.1 identified by match to protein family HMM PF00753 YP_275150.1 identified by similarity to PIR:G83132 YP_275151.1 identified by match to protein family HMM PF01584 YP_275152.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_275155.1 identified by match to protein family HMM PF02826 YP_275156.1 identified by match to protein family HMM TIGR01728 YP_275157.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_275158.1 identified by match to protein family HMM PF03861 YP_275160.1 identified by match to protein family HMM PF00872 YP_275161.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275162.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_275164.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_275165.1 identified by match to protein family HMM PF00165 YP_275166.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275167.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_275168.1 identified by match to protein family HMM PF02472 YP_275169.1 identified by match to protein family HMM PF01618 YP_275170.1 identified by match to protein family HMM PF02333 YP_275171.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782 YP_275173.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_275174.1 identified by match to protein family HMM PF00165 YP_275175.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275178.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_275179.1 identified by match to protein family HMM PF00496 YP_275180.1 identified by match to protein family HMM PF00528 YP_275181.1 identified by match to protein family HMM PF00528 YP_275182.1 identified by match to protein family HMM PF00005 YP_275183.1 identified by match to protein family HMM PF06178 YP_275184.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_275185.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_275186.1 identified by match to protein family HMM PF01497 YP_275187.1 identified by match to protein family HMM PF01032 YP_275188.1 identified by match to protein family HMM PF00005 YP_275189.1 identified by match to protein family HMM PF01136 YP_275190.1 identified by match to protein family HMM PF00583 YP_275191.1 identified by similarity to SP:P23675; match to protein family HMM TIGR02378 YP_275192.1 identified by match to protein family HMM PF00561 YP_275193.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275194.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_275195.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_275196.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_275197.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_275199.1 identified by similarity to PIR:D83413 YP_275200.1 identified by match to protein family HMM PF05014 YP_275201.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275202.1 identified by match to protein family HMM PF05145 YP_275203.1 identified by match to protein family HMM PF07221 YP_275204.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275205.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_275209.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_275210.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_275211.1 identified by match to protein family HMM PF07077 YP_275212.1 identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_275214.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_275215.1 identified by match to protein family HMM PF00857 YP_275217.1 identified by similarity to SP:P77380; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275218.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275220.1 identified by match to protein family HMM TIGR01730 YP_275221.1 identified by match to protein family HMM TIGR01730 YP_275222.1 identified by match to protein family HMM PF00873 YP_275223.1 identified by match to protein family HMM PF04909 YP_275224.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_275225.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_275229.1 identified by match to protein family HMM PF02230 YP_275230.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_275233.1 identified by match to protein family HMM PF05137 YP_275235.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_275236.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_275237.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_275238.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_275239.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_275240.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02533 YP_275241.1 identified by match to protein family HMM PF00440 YP_275242.1 identified by match to protein family HMM PF07690 YP_275243.1 identified by similarity to SP:Q57146; match to protein family HMM PF00583 YP_275244.1 identified by match to protein family HMM PF00171 YP_275245.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids YP_275246.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844 YP_275247.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_275248.1 identified by match to protein family HMM PF02974 YP_275249.1 identified by match to protein family HMM PF01027 YP_275250.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275251.1 identified by match to protein family HMM PF01547 YP_275252.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_275253.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_275254.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_275255.1 identified by similarity to GB:AAC35398.1; match to protein family HMM PF04077 YP_275256.1 identified by similarity to SP:P45573; match to protein family HMM PF04358 YP_275257.1 identified by match to protein family HMM PF02885 YP_275258.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 YP_275259.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_275260.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_275261.1 identified by match to protein family HMM PF00004 YP_275262.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_275263.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_275264.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_275265.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_275266.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_275267.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_275268.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_275269.1 identified by similarity to SP:P24245; match to protein family HMM PF00313; match to protein family HMM TIGR02381 YP_275270.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178 YP_275271.1 identified by match to protein family HMM PF00293 YP_275272.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_275273.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_275274.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_275275.1 identified by match to protein family HMM PF08007 YP_275276.1 identified by match to protein family HMM PF00583 YP_275277.1 identified by match to protein family HMM PF03958 YP_275278.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_275279.1 Catalyzes the transfer of electrons from NADH to quinone YP_275280.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_275281.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms YP_275282.1 Catalyzes the transfer of electrons from NADH to quinone YP_275283.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_275284.1 Catalyzes the transfer of electrons from NADH to quinone YP_275285.1 Catalyzes the transfer of electrons from NADH to quinone YP_275286.1 Catalyzes the transfer of electrons from NADH to quinone YP_275287.1 Catalyzes the transfer of electrons from NADH to quinone YP_275288.1 Catalyzes the transfer of electrons from NADH to quinone YP_275289.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_275290.1 Catalyzes the transfer of electrons from NADH to quinone YP_275291.1 Catalyzes the transfer of electrons from NADH to quinone YP_275292.1 identified by match to protein family HMM PF00165 YP_275293.1 identified by match to protein family HMM PF00561 YP_275294.1 identified by match to protein family HMM PF01594 YP_275295.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275296.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275297.1 identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275298.1 identified by match to protein family HMM PF03413 YP_275299.1 identified by match to protein family HMM PF03413 YP_275300.1 identified by match to protein family HMM PF01242 YP_275301.1 identified by match to protein family HMM PF00892 YP_275303.1 identified by match to protein family HMM PF00557 YP_275304.1 identified by match to protein family HMM PF00266 YP_275305.1 identified by match to protein family HMM PF01041 YP_275306.1 identified by match to protein family HMM PF01943 YP_275307.1 identified by match to protein family HMM PF00535 YP_275308.1 identified by similarity to SP:P77153; match to protein family HMM PF01451 YP_275309.1 identified by similarity to SP:P38134; match to protein family HMM PF02706 YP_275310.1 identified by match to protein family HMM TIGR01955 YP_275311.1 identified by match to protein family HMM PF00535 YP_275312.1 identified by match to protein family HMM PF00534 YP_275313.1 identified by match to protein family HMM PF00534 YP_275314.1 identified by similarity to GB:CAA43914.1; match to protein family HMM PF00534 YP_275315.1 identified by match to protein family HMM PF02397 YP_275316.1 identified by match to protein family HMM PF02563 YP_275317.1 identified by match to protein family HMM PF01810 YP_275319.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275320.1 identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_275321.1 identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_275322.1 identified by match to protein family HMM PF02667 YP_275323.1 identified by match to protein family HMM PF03992 YP_275324.1 identified by similarity to GB:AAO56934.1 YP_275325.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_275326.1 identified by match to protein family HMM PF03009 YP_275327.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_275328.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_275329.1 identified by match to protein family HMM PF02735 YP_275330.1 identified by similarity to GB:AAB82564.1; match to protein family HMM PF00296 YP_275331.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_275332.1 identified by similarity to GB:AAM43248.1; match to protein family HMM PF07992 YP_275333.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_275334.1 identified by match to protein family HMM PF00892 YP_275335.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_275336.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_275337.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_275338.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_275339.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_275343.1 identified by match to protein family HMM PF00015 YP_275345.1 identified by match to protein family HMM PF02653 YP_275346.1 identified by match to protein family HMM PF00005 YP_275347.1 identified by match to protein family HMM PF00532 YP_275348.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_275349.1 identified by match to protein family HMM PF01261 YP_275350.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_275351.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02776 YP_275352.1 identified by similarity to SP:P42419 YP_275353.1 identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_275354.1 identified by match to protein family HMM PF06845 YP_275355.1 identified by match to protein family HMM PF01380 YP_275357.1 identified by similarity to SP:P75771; match to protein family HMM PF00614 YP_275358.1 identified by match to protein family HMM PF03372 YP_275359.1 identified by similarity to SP:P08732; match to protein family HMM PF01292 YP_275360.1 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides YP_275361.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_275362.1 identified by similarity to GB:CAC17801.1; match to protein family HMM PF00440 YP_275363.1 Represses a number of genes involved in the response to DNA damage YP_275364.1 identified by similarity to SP:P08845 YP_275367.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_275368.1 identified by match to protein family HMM PF07866 YP_275369.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_275370.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_275373.1 identified by match to protein family HMM PF00582 YP_275374.1 identified by match to protein family HMM PF00005 YP_275375.1 identified by match to protein family HMM PF01464 YP_275376.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476 YP_275377.1 identified by similarity to SP:P37599; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_275380.1 identified by similarity to SP:P13800; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_275381.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role YP_275382.1 identified by match to protein family HMM PF02397 YP_275383.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_275384.1 identified by match to protein family HMM PF02563 YP_275385.1 identified by match to protein family HMM PF02706 YP_275386.1 identified by match to protein family HMM PF00534 YP_275387.1 identified by match to protein family HMM PF00150 YP_275389.1 identified by match to protein family HMM PF00534 YP_275392.1 identified by match to protein family HMM PF03023 YP_275393.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275394.1 identified by match to protein family HMM PF00872 YP_275395.1 identified by match to protein family HMM PF03595 YP_275399.1 identified by match to protein family HMM PF01965 YP_275401.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275402.1 identified by match to protein family HMM PF07690 YP_275404.1 identified by match to protein family HMM PF00440 YP_275405.1 identified by similarity to SP:P25093; match to protein family HMM PF01557; match to protein family HMM TIGR01266 YP_275406.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_275407.1 identified by match to protein family HMM PF01614 YP_275408.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_275409.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_275410.1 identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_275411.1 identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_275412.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 YP_275413.1 identified by similarity to SP:P52073; match to protein family HMM PF01565 YP_275414.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_275415.1 identified by match to protein family HMM PF03928 YP_275417.1 identified by match to protein family HMM PF00532 YP_275418.1 identified by similarity to SP:P46859; match to protein family HMM TIGR01313 YP_275419.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_275420.1 affects carbohydrate metabolism; has regulatory role in many processes YP_275423.1 identified by match to protein family HMM PF00583 YP_275425.1 identified by match to protein family HMM PF00583 YP_275426.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_275428.1 identified by match to protein family HMM PF00440 YP_275429.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275431.1 identified by similarity to PIR:G83504 YP_275432.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_275433.1 identified by match to protein family HMM PF00583 YP_275434.1 identified by similarity to SP:Q59635; match to protein family HMM PF00199 YP_275435.1 identified by match to protein family HMM PF00023 YP_275436.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_275438.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275439.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_275440.1 identified by match to protein family HMM PF07690 YP_275441.1 identified by match to protein family HMM PF03969 YP_275442.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_275443.1 identified by match to protein family HMM PF00144 YP_275444.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589 YP_275445.1 identified by match to protein family HMM PF00730 YP_275446.1 identified by match to protein family HMM PF03239 YP_275447.1 identified by match to protein family HMM PF04302; involved in iron transport YP_275448.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413 YP_275449.1 identified by match to protein family HMM PF04302 YP_275450.1 identified by match to protein family HMM PF00174 YP_275453.1 identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_275454.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_275456.1 identified by match to protein family HMM PF01047 YP_275457.1 identified by match to protein family HMM PF04632 YP_275458.1 identified by similarity to GB:AAN65810.1; match to protein family HMM PF07869 YP_275459.1 identified by match to protein family HMM PF00529 YP_275460.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_275461.1 identified by similarity to SP:P09454; match to protein family HMM PF00583 YP_275462.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_275463.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_275465.1 identified by similarity to GB:AAC44229.1; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_275466.1 identified by similarity to SP:P45405; match to protein family HMM PF03918 YP_275467.1 identified by similarity to SP:P33926; match to protein family HMM TIGR00385 YP_275468.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353 YP_275469.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_275470.1 identified by similarity to SP:P36770; match to protein family HMM PF04995 YP_275471.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_275472.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190 YP_275473.2 ATP-binding protein; required for proper cytochrome c maturation YP_275477.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_275478.1 identified by match to protein family HMM PF01168 YP_275479.1 identified by match to protein family HMM PF01042 YP_275480.1 identified by match to protein family HMM PF01266 YP_275481.1 identified by match to protein family HMM PF00583 YP_275482.1 identified by match to protein family HMM PF00171 YP_275483.1 identified by similarity to GB:AAO55535.1 YP_275484.1 catalyzes the conversion of citrate to isocitrate YP_275485.1 identified by match to protein family HMM PF02517 YP_275486.1 identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_275487.1 identified by match to protein family HMM PF01609 YP_275488.1 identified by match to protein family HMM PF00872 YP_275490.1 identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_275492.1 identified by match to protein family HMM PF02368 YP_275495.1 CcoN; FixN YP_275496.1 CcoO; FixO YP_275497.1 identified by similarity to GB:AAM76066.1; match to protein family HMM PF05545 YP_275498.1 identified by similarity to GB:AAC44519.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782 YP_275499.1 identified by match to protein family HMM PF03762 YP_275500.1 identified by match to protein family HMM TIGR01552 YP_275501.1 identified by match to protein family HMM PF01850 YP_275502.1 identified by match to protein family HMM PF00037 YP_275504.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_275505.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847 YP_275506.1 identified by match to protein family HMM PF02683 YP_275507.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_275509.1 identified by similarity to SP:P23926; match to protein family HMM PF00027; match to protein family HMM PF00325 YP_275510.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_275512.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_275513.1 identified by match to protein family HMM PF01584 YP_275514.1 identified by similarity to SP:P37522; match to protein family HMM PF01656 YP_275515.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility YP_275516.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC YP_275517.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_275518.1 identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_275519.1 identified by match to protein family HMM PF04344 YP_275520.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072 YP_275521.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_275522.1 identified by similarity to GB:AAF24747.1; match to protein family HMM PF01656 YP_275523.1 positive regulator of class III flagellar genes YP_275524.1 membrane protein involved in the flagellar export apparatus YP_275525.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_275526.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_275527.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_275528.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_275529.1 identified by similarity to SP:Q51467; match to protein family HMM PF04347 YP_275530.1 One of three proteins involved in switching the direction of the flagellar rotation YP_275531.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_275532.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_275533.1 identified by match to protein family HMM PF02120 YP_275534.1 identified by match to protein family HMM PF01627 YP_275535.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07228 YP_275536.1 identified by match to protein family HMM PF01740 YP_275537.1 rod/hook and filament chaperone YP_275538.1 involved in type III protein export during flagellum assembly YP_275539.1 binds to and inhibits the function of flagella specific ATPase FliI YP_275540.1 One of three proteins involved in switching the direction of the flagellar rotation YP_275541.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_275542.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_275543.1 identified by similarity to GB:AAA93530.1; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_275544.1 identified by similarity to GB:AAA93529.1; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_275545.1 identified by similarity to GB:AAG47964.1; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06490; match to protein family HMM TIGR01199 YP_275546.1 identified by similarity to GB:AAT42124.1 YP_275547.1 flagellin specific chaperone YP_275548.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_275549.1 identified by similarity to GB:AAT42121.1; match to protein family HMM PF03646 YP_275550.1 structural flagella protein YP_275552.1 identified by match to protein family HMM PF00535 YP_275553.1 identified by match to protein family HMM PF00535 YP_275554.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_275555.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_275556.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_275557.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_275558.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_275559.1 makes up the distal portion of the flagellar basal body rod YP_275560.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_275562.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559 YP_275563.1 the hook connects flagellar basal body to the flagellar filament YP_275564.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_275565.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_275566.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella YP_275567.1 identified by match to protein family HMM PF07080 YP_275568.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_275569.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_275570.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_275571.1 identified by similarity to GB:AAN08635.1; match to protein family HMM PF00072; match to protein family HMM PF01584 YP_275572.1 required for the assembly of the flagellar basal body P-ring YP_275573.1 identified by similarity to SP:P39809; match to protein family HMM PF04316 YP_275574.1 identified by match to protein family HMM PF05130 YP_275576.1 identified by match to protein family HMM PF07690 YP_275577.1 identified by match to protein family HMM PF00120 YP_275578.1 identified by match to protein family HMM PF01041 YP_275579.1 identified by similarity to GB:AAT32691.1 YP_275580.1 identified by match to protein family HMM PF00535 YP_275582.1 identified by match to protein family HMM PF00132 YP_275583.1 identified by similarity to SP:P50199; match to protein family HMM PF00106 YP_275585.1 identified by similarity to SP:P35164; match to protein family HMM PF02518 YP_275586.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_275587.1 identified by similarity to GB:AAN69231.1 YP_275588.1 identified by match to protein family HMM PF03641 YP_275589.1 identified by similarity to GB:AAF03756.1; match to protein family HMM PF00165 YP_275590.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_275593.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_275594.1 identified by match to protein family HMM PF00474 YP_275595.1 identified by match to protein family HMM PF02012 YP_275596.1 identified by match to protein family HMM PF00106 YP_275597.1 identified by match to protein family HMM PF00455 YP_275598.1 identified by match to protein family HMM PF00872 YP_275602.1 identified by similarity to GB:AAM00282.1; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_275603.1 identified by similarity to GB:AAM00353.2; match to protein family HMM PF01126 YP_275604.1 identified by match to protein family HMM PF00884 YP_275606.1 identified by match to protein family HMM PF02012 YP_275607.1 identified by match to protein family HMM PF01292 YP_275609.1 identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275610.1 identified by similarity to SP:P40719; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275611.1 identified by similarity to GB:CAE30754.1 YP_275612.1 identified by similarity to GB:BAB19801.1; match to protein family HMM PF00171 YP_275613.1 identified by match to protein family HMM PF07063 YP_275615.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275616.1 identified by similarity to SP:P30744; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_275617.1 identified by match to protein family HMM PF01810 YP_275618.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275619.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_275620.1 identified by match to protein family HMM PF00171 YP_275621.1 identified by similarity to SP:P28811; match to protein family HMM PF03446 YP_275622.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275623.1 identified by similarity to SP:P47734; match to protein family HMM PF00107 YP_275624.1 identified by match to protein family HMM PF01177 YP_275625.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_275626.1 identified by match to protein family HMM PF02133 YP_275627.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_275629.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_275630.1 identified by similarity to GB:AAK22148.1 YP_275632.1 identified by similarity to GB:CAC46440.1 YP_275633.1 identified by match to protein family HMM PF00440 YP_275635.1 identified by match to protein family HMM PF00106 YP_275636.1 identified by match to protein family HMM PF00561 YP_275637.1 identified by match to protein family HMM PF00107 YP_275638.1 identified by match to protein family HMM PF00106 YP_275639.1 identified by match to protein family HMM PF00892 YP_275640.1 identified by match to protein family HMM PF00165 YP_275641.1 identified by match to protein family HMM PF00440 YP_275642.1 identified by similarity to SP:Q12390; match to protein family HMM PF02798 YP_275643.1 identified by match to protein family HMM PF00924 YP_275646.1 identified by match to protein family HMM PF00872 YP_275647.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_275648.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_275649.1 identified by match to protein family HMM PF05717 YP_275652.1 identified by match to protein family HMM PF01527 YP_275655.1 identified by match to protein family HMM PF03869 YP_275656.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_275658.1 affects carbohydrate metabolism; has regulatory role in many processes YP_275659.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_275660.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_275661.1 identified by similarity to SP:P75823 YP_275662.2 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_275663.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_275665.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_275666.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_275667.1 identified by similarity to SP:P80358; match to protein family HMM PF04958 YP_275668.1 identified by similarity to SP:P80357; match to protein family HMM PF04958 YP_275669.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_275670.1 identified by similarity to GB:AAL35898.1; match to protein family HMM PF00165 YP_275671.1 identified by match to protein family HMM PF00005 YP_275672.1 identified by match to protein family HMM PF04952 YP_275673.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_275674.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_275675.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_275676.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_275678.1 identified by similarity to GB:AAC44635.1; match to protein family HMM PF00158; match to protein family HMM PF01842; match to protein family HMM TIGR01199 YP_275679.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_275680.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_275682.2 identified by match to protein family HMM PF07690 YP_275683.1 identified by match to protein family HMM PF00472 YP_275684.1 identified by match to protein family HMM PF00324 YP_275686.1 identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_275687.1 identified by match to protein family HMM PF06945 YP_275688.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_275689.1 identified by similarity to SP:P35154; match to protein family HMM PF02616 YP_275690.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_275691.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_275692.1 Involved in cell division; probably involved in intracellular septation YP_275693.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_275695.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275696.1 identified by match to protein family HMM PF07813 YP_275698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275699.1 identified by match to protein family HMM PF00881 YP_275700.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_275701.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_275702.1 identified by similarity to SP:P27303; match to protein family HMM PF00529 YP_275703.1 identified by similarity to SP:P27245; match to protein family HMM PF01047 YP_275704.1 identified by similarity to SP:Q08015; match to protein family HMM PF06175 YP_275705.1 identified by similarity to PIR:H83422; match to protein family HMM PF06945 YP_275706.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_275707.1 identified by match to protein family HMM PF02659 YP_275708.1 identified by match to protein family HMM PF05088 YP_275711.1 identified by match to protein family HMM PF07726 YP_275712.1 identified by similarity to GB:AAN67645.1; match to protein family HMM PF01882 YP_275714.1 identified by match to protein family HMM PF00092 YP_275715.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_275717.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_275722.1 identified by match to protein family HMM PF06829 YP_275723.1 identified by match to protein family HMM PF07690 YP_275724.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_275725.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_275726.1 identified by match to protein family HMM PF05488 YP_275727.1 identified by match to protein family HMM PF00872 YP_275729.1 identified by match to protein family HMM PF01609 YP_275730.1 identified by match to protein family HMM PF01609 YP_275734.1 identified by match to protein family HMM PF02012 YP_275735.1 identified by match to protein family HMM PF07044 YP_275736.1 identified by match to protein family HMM PF03738 YP_275738.1 identified by match to protein family HMM PF03994 YP_275740.1 identified by match to protein family HMM PF01694 YP_275741.1 identified by match to protein family HMM PF04012 YP_275743.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_275745.1 identified by match to protein family HMM PF07023 YP_275746.1 identified by match to protein family HMM PF01694 YP_275747.1 identified by match to protein family HMM PF00149 YP_275748.1 catalyzes the phosphorylation of NAD to NADP YP_275749.1 identified by match to protein family HMM PF05488 YP_275751.1 identified by similarity to SP:P37310; match to protein family HMM PF02040; match to protein family HMM TIGR00935 YP_275752.1 identified by similarity to GB:AAN70083.1 YP_275753.1 identified by match to protein family HMM PF00149 YP_275754.1 identified by match to protein family HMM PF05169; match to protein family HMM TIGR02174 YP_275755.1 identified by match to protein family HMM PF00005 YP_275756.1 identified by match to protein family HMM PF00528 YP_275757.1 identified by match to protein family HMM PF00296 YP_275758.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275760.1 identified by match to protein family HMM PF00581 YP_275761.1 identified by match to protein family HMM TIGR01728 YP_275762.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_275763.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_275764.1 identified by match to protein family HMM TIGR01728 YP_275765.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275766.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_275767.1 identified by match to protein family HMM PF07883 YP_275768.1 identified by match to protein family HMM PF00515 YP_275769.1 identified by match to protein family HMM PF01590 YP_275770.1 identified by similarity to GB:AAR33548.1; match to protein family HMM PF05673 YP_275771.1 identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275772.1 identified by match to protein family HMM PF00255 YP_275773.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_275774.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_275775.1 metalloprotease YP_275776.1 identified by similarity to SP:Q7XA48; match to protein family HMM PF02900 YP_275777.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_275778.1 identified by similarity to GB:AAN67486.1 YP_275779.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358 YP_275780.1 identified by match to protein family HMM PF06568 YP_275782.1 identified by match to protein family HMM PF00872 YP_275784.1 identified by match to protein family HMM PF00534 YP_275785.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275786.1 identified by match to protein family HMM PF01925 YP_275787.1 identified by match to protein family HMM PF01047 YP_275788.1 identified by similarity to SP:O68390; match to protein family HMM PF02566 YP_275789.1 identified by match to protein family HMM PF07859 YP_275790.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_275796.1 identified by match to protein family HMM PF00440 YP_275797.1 identified by match to protein family HMM TIGR00426 YP_275798.1 identified by match to protein family HMM PF02719; match to protein family HMM PF07993 YP_275799.1 identified by match to protein family HMM PF00953 YP_275800.1 identified by similarity to SP:Q56623; match to protein family HMM PF07993 YP_275801.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_275803.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_275804.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_275805.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_275806.1 identified by match to protein family HMM PF00275; match to protein family HMM PF02153 YP_275807.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_275808.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_275809.1 negatively supercoils closed circular double-stranded DNA YP_275810.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_275811.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_275812.1 Involved in ubiquinone biosynthesis YP_275813.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_275814.1 identified by match to protein family HMM PF00106 YP_275815.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_275816.1 identified by similarity to PIR:C83537 YP_275817.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_275818.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_275819.1 identified by match to protein family HMM PF01323 YP_275820.1 identified by match to protein family HMM PF00581 YP_275821.1 identified by similarity to SP:P15298; match to protein family HMM PF01722 YP_275823.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_275824.1 identified by match to protein family HMM PF02525 YP_275825.1 identified by match to protein family HMM PF00892 YP_275826.1 identified by match to protein family HMM PF03942 YP_275828.1 identified by match to protein family HMM PF02646 YP_275831.1 identified by match to protein family HMM PF03349 YP_275832.1 identified by match to protein family HMM PF00255 YP_275834.1 identified by match to protein family HMM PF07690 YP_275835.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_275836.1 identified by match to protein family HMM PF00300 YP_275837.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_275838.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_275839.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_275840.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_275841.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_275842.1 identified by similarity to GB:CAA86583.1; match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_275843.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_275844.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_275845.1 identified by similarity to SP:Q44091 YP_275846.1 identified by match to protein family HMM PF00877 YP_275847.1 identified by match to protein family HMM PF00877 YP_275848.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_275849.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP YP_275850.1 identified by match to protein family HMM PF01594 YP_275852.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_275853.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_275856.1 identified by similarity to GB:AAN67279.1 YP_275857.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era YP_275858.1 identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_275859.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_275860.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_275861.1 identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_275863.1 identified by match to protein family HMM PF03724 YP_275864.1 identified by similarity to GB:BAC81190.1 YP_275865.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_275866.1 identified by similarity to SP:P30849; match to protein family HMM PF00258 YP_275868.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_275869.1 identified by match to protein family HMM PF03926 YP_275870.1 involved in the transport of C4-dicarboxylates across the membrane YP_275871.1 identified by similarity to SP:P23837; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275872.1 identified by similarity to SP:P23836; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275874.1 identified by match to protein family HMM PF01738 YP_275876.1 identified by similarity to GB:AAO55195.1; match to protein family HMM PF01648 YP_275878.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_275879.1 identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_275880.1 Catalyzes the rate-limiting step in dNTP synthesis YP_275881.1 identified by similarity to GB:AAO56533.1; match to protein family HMM PF00665 YP_275882.1 identified by match to protein family HMM PF01527 YP_275883.1 identified by match to protein family HMM PF00589 YP_275886.1 identified by similarity to GB:AAO58991.1; match to protein family HMM TIGR01199 YP_275887.1 Catalyzes the rate-limiting step in dNTP synthesis YP_275888.1 identified by match to protein family HMM TIGR02391 YP_275889.1 identified by match to protein family HMM PF01609 YP_275892.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_275893.1 identified by match to protein family HMM PF00903 YP_275894.1 identified by match to protein family HMM PF00583 YP_275896.1 identified by similarity to SP:P56744; match to protein family HMM PF00202; match to protein family HMM TIGR00709 YP_275897.1 identified by similarity to SP:Q9Z3R1; match to protein family HMM PF00282 YP_275898.1 identified by match to protein family HMM PF07081 YP_275899.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_275900.1 identified by match to protein family HMM PF01872 YP_275901.1 identified by match to protein family HMM PF00107 YP_275902.1 identified by match to protein family HMM PF00589; ORF1 YP_275903.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_275904.1 identified by match to protein family HMM PF04055 YP_275905.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_275906.1 identified by match to protein family HMM PF00691 YP_275907.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_275908.1 identified by match to protein family HMM PF06519; match to protein family HMM TIGR01352 YP_275909.1 identified by match to protein family HMM PF02472 YP_275910.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_275911.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_275912.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_275913.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_275914.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_275915.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_275916.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_275918.1 identified by match to protein family HMM PF00210 YP_275919.1 identified by match to protein family HMM PF00313 YP_275920.1 identified by similarity to SP:P30857; match to protein family HMM PF04102 YP_275921.1 identified by match to protein family HMM PF01230 YP_275922.1 identified by match to protein family HMM PF03573 YP_275923.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_275925.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_275926.1 identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331 YP_275927.1 identified by match to protein family HMM PF06057 YP_275928.1 identified by match to protein family HMM PF02705 YP_275930.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_275931.1 identified by match to protein family HMM PF00583 YP_275932.1 identified by match to protein family HMM PF01479 YP_275933.1 identified by match to protein family HMM PF07308 YP_275934.1 identified by similarity to GB:AAN66813.1; match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_275935.1 identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_275936.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275937.1 identified by match to protein family HMM PF01219 YP_275938.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_275939.1 identified by match to protein family HMM PF03942 YP_275941.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_275942.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_275943.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_275944.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_275945.1 This protein performs the mismatch recognition step during the DNA repair process YP_275946.1 identified by similarity to SP:P00214; match to protein family HMM PF00037 YP_275947.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_275948.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_275949.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins YP_275950.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_275951.1 catalyzes the modification of U13 in tRNA(Glu) YP_275952.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_275953.1 identified by match to protein family HMM PF00756 YP_275954.1 identified by similarity to SP:P25437; match to protein family HMM PF00107 YP_275955.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_275956.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_275957.1 identified by similarity to SP:Q46894; match to protein family HMM PF04977 YP_275958.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_275959.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_275960.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_275961.1 identified by similarity to SP:P52097; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_275962.2 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_275963.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_275964.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_275965.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_275966.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_275967.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_275968.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_275969.1 identified by match to protein family HMM PF03938 YP_275970.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_275971.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_275972.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_275973.1 identified by match to protein family HMM PF01148 YP_275974.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_275975.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_275976.1 Catalyzes the phosphorylation of UMP to UDP YP_275977.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_275978.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_275979.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_275980.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_275981.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_275983.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_275985.1 identified by match to protein family HMM PF00266 YP_275986.1 identified by match to protein family HMM PF02657 YP_275987.1 identified by match to protein family HMM PF00899 YP_275988.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_275989.1 identified by similarity to SP:P36999 YP_275991.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_275992.1 identified by similarity to PIR:G83185 YP_275995.1 identified by similarity to GB:CAG21804.1; match to protein family HMM PF04445 YP_275997.1 identified by similarity to GB:AAO70071.1; match to protein family HMM PF06904 YP_275998.1 identified by similarity to GB:AAN67130.1; match to protein family HMM PF01904 YP_276000.1 identified by match to protein family HMM PF00814 YP_276001.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_276003.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_276006.1 identified by match to protein family HMM PF00691 YP_276009.1 identified by match to protein family HMM PF08014; match to protein family HMM TIGR02421 YP_276010.1 identified by match to protein family HMM PF00440 YP_276011.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_276012.1 identified by similarity to SP:P28353; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_276013.1 identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_276014.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_276015.1 identified by similarity to SP:P18769; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_276016.1 identified by similarity to GB:AAO92336.1; match to protein family HMM PF01584 YP_276017.1 identified by similarity to GB:AAO92335.1; match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF03705; match to protein family HMM PF07719 YP_276018.1 identified by match to protein family HMM PF01584 YP_276019.1 identified by similarity to GB:AAO92333.1; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_276020.1 identified by match to protein family HMM PF04391 YP_276021.1 identified by match to protein family HMM PF01609 YP_276023.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_276024.1 identified by similarity to SP:P46233; match to protein family HMM PF00691 YP_276025.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_276026.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_276027.1 identified by match to protein family HMM PF04324 YP_276028.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_276029.1 identified by match to protein family HMM TIGR00365 YP_276030.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_276032.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_276033.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_276034.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_276035.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_276036.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_276037.1 identified by similarity to SP:P09392; match to protein family HMM PF00455 YP_276038.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_276039.1 identified by match to protein family HMM PF00497 YP_276040.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_276041.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_276042.1 identified by match to protein family HMM PF00005 YP_276043.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276044.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_276045.1 identified by match to protein family HMM PF01323 YP_276047.1 identified by similarity to SP:P19797; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_276048.1 identified by match to protein family HMM PF00293 YP_276049.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_276052.1 identified by similarity to GB:BAC49678.1 YP_276059.1 identified by match to protein family HMM PF03551 YP_276060.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_276063.1 identified by similarity to SP:P15877; match to protein family HMM PF01011 YP_276065.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_276067.1 identified by similarity to SP:P51831; match to protein family HMM PF00106 YP_276068.1 identified by similarity to SP:P12310; match to protein family HMM PF00106 YP_276069.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_276070.1 identified by match to protein family HMM PF01522 YP_276071.1 identified by match to protein family HMM PF01425 YP_276072.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_276073.1 identified by match to protein family HMM PF01152 YP_276075.1 identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_276077.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_276079.1 identified by match to protein family HMM TIGR00740 YP_276080.1 identified by match to protein family HMM PF08003; match to protein family HMM TIGR00452 YP_276081.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_276082.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_276083.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_276084.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_276086.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_276087.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_276088.1 identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_276089.1 identified by similarity to SP:P38108; match to protein family HMM PF03888 YP_276090.1 identified by similarity to GB:AAK94007.1; match to protein family HMM PF03872; match to protein family HMM PF03873 YP_276091.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis YP_276092.1 catalyzes the formation of oxaloacetate from L-aspartate YP_276094.1 identified by match to protein family HMM PF03937 YP_276095.1 identified by match to protein family HMM PF01571 YP_276097.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_276098.1 identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_276099.1 identified by match to protein family HMM PF03401 YP_276101.1 identified by match to protein family HMM PF05145 YP_276102.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_276107.1 identified by match to protein family HMM PF00528 YP_276108.1 identified by match to protein family HMM PF00005 YP_276109.1 identified by similarity to GB:CAE10206.1 YP_276110.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00724 YP_276111.1 catalyzes the hydrolysis of allophanate YP_276112.1 identified by match to protein family HMM PF00872 YP_276115.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_276117.1 identified by match to protein family HMM PF00440 YP_276118.1 identified by match to protein family HMM PF00106 YP_276121.1 identified by match to protein family HMM PF00892 YP_276123.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_276124.1 identified by similarity to SP:Q00374; match to protein family HMM PF00544 YP_276125.1 identified by match to protein family HMM PF00583 YP_276126.1 identified by similarity to SP:P06758; match to protein family HMM PF00465 YP_276128.1 similar to unknown protein of Photorhabdus and some weak similarities with other unknown proteins YP_276129.1 identified by match to protein family HMM PF04536 YP_276130.1 identified by match to protein family HMM PF04536 YP_276131.1 identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_276132.1 identified by similarity to SP:P10047; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276133.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_276134.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_276135.1 identified by match to protein family HMM PF00012 YP_276136.1 identified by match to protein family HMM PF00226 YP_276138.1 identified by similarity to GB:BAC47690.1 YP_276140.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_276142.1 identified by similarity to GB:AAK15050.1; match to protein family HMM PF00440 YP_276143.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_276144.1 identified by similarity to GB:AAN67008.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_276145.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_276146.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_276147.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_276148.1 identified by similarity to GB:AAL02406.1; match to protein family HMM PF01144 YP_276149.1 identified by similarity to GB:AAL02405.1; match to protein family HMM PF01144 YP_276150.1 identified by similarity to SP:Q52154; match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_276152.1 identified by match to protein family HMM PF01384 YP_276154.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_276156.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_276157.1 identified by match to protein family HMM PF06271 YP_276161.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_276162.1 identified by similarity to PIR:D95390 YP_276164.1 identified by similarity to GB:AAO77318.1; match to protein family HMM PF01882 YP_276166.1 identified by match to protein family HMM PF00515 YP_276167.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_276168.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_276169.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_276170.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_276171.1 identified by similarity to GB:AAO17204.1; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_276172.1 identified by match to protein family HMM PF00872 YP_276175.1 identified by similarity to GB:CAD29690.1; match to protein family HMM PF00614 YP_276176.1 identified by match to protein family HMM PF04264 YP_276178.1 identified by match to protein family HMM PF00144 YP_276180.1 identified by match to protein family HMM PF01553 YP_276181.1 identified by similarity to GB:AAN66547.1; match to protein family HMM PF04336 YP_276182.1 identified by match to protein family HMM PF01022 YP_276183.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_276184.1 identified by similarity to GB:AAF02539.1; match to protein family HMM PF00724 YP_276187.1 identified by match to protein family HMM PF01073; match to protein family HMM PF07993 YP_276188.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_276189.1 identified by match to protein family HMM PF01810 YP_276190.1 identified by similarity to SP:P53641; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_276191.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_276193.1 identified by similarity to GB:CAE39986.1; match to protein family HMM PF01243 YP_276194.1 identified by match to protein family HMM PF06537 YP_276196.1 identified by match to protein family HMM PF07433 YP_276198.1 identified by match to protein family HMM PF06293 YP_276200.1 identified by similarity to GB:CAA70932.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_276201.1 identified by similarity to GB:CAA70931.1; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_276202.1 identified by match to protein family HMM PF01569 YP_276203.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_276204.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_276205.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_276206.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_276208.1 identified by match to protein family HMM PF01035 YP_276209.1 identified by similarity to SP:P36670; match to protein family HMM PF07690; match to protein family HMM TIGR00901 YP_276211.1 identified by match to protein family HMM PF00872 YP_276213.1 identified by match to protein family HMM PF05488 YP_276215.1 identified by match to protein family HMM PF00924 YP_276216.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_276217.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_276218.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_276219.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_276220.1 identified by match to protein family HMM PF02798 YP_276221.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_276222.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_276224.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_276225.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_276226.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_276227.1 identified by similarity to SP:P06136; match to protein family HMM PF03799 YP_276228.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_276229.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_276230.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_276231.1 identified by similarity to SP:P16457; match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_276232.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_276233.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_276234.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_276235.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_276236.1 identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_276237.1 identified by similarity to SP:P22187; match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_276238.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_276239.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_276240.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_276241.1 identified by match to protein family HMM PF04348 YP_276242.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_276243.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_276244.1 identified by match to protein family HMM PF04972 YP_276245.1 identified by similarity to SP:P25663; match to protein family HMM PF04386 YP_276246.1 identified by similarity to SP:P05838; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_276247.1 forms a direct contact with the tRNA during translation YP_276248.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_276249.1 identified by match to protein family HMM PF00165 YP_276250.1 identified by match to protein family HMM PF03969 YP_276251.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_276253.1 identified by match to protein family HMM PF06295 YP_276254.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis YP_276255.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_276256.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_276257.1 identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_276258.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_276259.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_276260.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_276261.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_276262.1 identified by similarity to GB:AAD17962.1; match to protein family HMM PF01722 YP_276263.1 identified by match to protein family HMM PF01740 YP_276264.1 identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494 YP_276265.1 identified by similarity to GB:AAD17959.1; match to protein family HMM PF02470 YP_276266.1 identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_276267.1 identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005 YP_276268.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_276269.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_276270.1 identified by match to protein family HMM PF06835 YP_276271.1 identified by match to protein family HMM PF03968 YP_276272.1 identified by match to protein family HMM PF00005 YP_276273.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_276274.1 identified by similarity to SP:P17161; match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_276275.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_276276.1 identified by similarity to SP:P17163; match to protein family HMM PF03668 YP_276277.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_276278.1 identified by similarity to SP:P53652; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_276279.1 identified by match to protein family HMM PF00872 YP_276281.1 identified by match to protein family HMM PF01609 YP_276282.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_276284.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_276285.1 identified by similarity to SP:Q8PIX9; match to protein family HMM PF04751 YP_276286.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_276287.1 identified by match to protein family HMM PF00795 YP_276288.1 identified by match to protein family HMM TIGR02099 YP_276290.1 identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_276291.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_276292.1 identified by match to protein family HMM PF04093 YP_276293.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_276294.1 functions in MreBCD complex in some organisms YP_276295.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_276296.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_276297.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_276298.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_276299.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_276300.1 identified by match to protein family HMM PF02627 YP_276301.1 identified by match to protein family HMM PF03547 YP_276302.1 identified by match to protein family HMM PF00245 YP_276303.1 identified by similarity to GB:AAQ58039.1 YP_276304.1 identified by match to protein family HMM PF05359 YP_276306.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_276307.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_276308.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_276309.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_276310.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_276311.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_276312.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_276313.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_276314.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_276315.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_276316.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_276317.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_276318.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_276319.1 identified by similarity to SP:P28692; match to protein family HMM PF01728 YP_276320.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_276321.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_276322.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_276323.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_276324.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_276325.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_276326.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_276327.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_276328.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_276329.1 identified by match to protein family HMM PF01475 YP_276330.1 identified by similarity to SP:O68564; match to protein family HMM PF04355 YP_276331.1 identified by similarity to SP:P43994; match to protein family HMM PF03658 YP_276332.1 identified by match to protein family HMM PF03364 YP_276333.1 identified by match to protein family HMM PF00209 YP_276334.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_276338.1 identified by match to protein family HMM PF00476 YP_276340.1 identified by match to protein family HMM PF00239; highly similar to transposon Tn2501 resolvase YP_276341.1 identified by match to protein family HMM PF01609 YP_276343.1 identified by similarity to GB:AAQ61639.1; match to protein family HMM PF05638 YP_276346.1 identified by match to protein family HMM PF00872 YP_276347.1 identified by match to protein family HMM PF00583 YP_276348.1 identified by similarity to SP:Q04657; match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_276349.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785 YP_276351.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_276352.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_276353.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_276354.1 identified by match to protein family HMM PF00528 YP_276355.1 identified by match to protein family HMM PF00528 YP_276356.1 identified by match to protein family HMM PF00196 YP_276357.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250 YP_276358.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_276359.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_276360.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276362.1 identified by match to protein family HMM PF03349 YP_276363.1 identified by match to protein family HMM PF01590 YP_276364.1 identified by match to protein family HMM PF00583 YP_276365.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590 YP_276366.1 identified by match to protein family HMM PF01925 YP_276368.1 identified by similarity to SP:P39829; match to protein family HMM PF04292; match to protein family HMM PF04295 YP_276369.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893 YP_276370.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_276371.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_276372.1 identified by match to protein family HMM PF00005 YP_276373.1 identified by similarity to SP:P42508; match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_276374.1 identified by similarity to GB:AAF01775.3; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276375.1 identified by match to protein family HMM PF04402 YP_276376.1 identified by match to protein family HMM PF00496 YP_276377.1 identified by match to protein family HMM PF00496 YP_276378.1 identified by match to protein family HMM PF00496 YP_276379.1 identified by match to protein family HMM PF03573 YP_276380.1 identified by match to protein family HMM PF00496 YP_276381.1 identified by match to protein family HMM PF00528 YP_276382.1 identified by match to protein family HMM PF00528 YP_276383.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_276384.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_276385.1 identified by match to protein family HMM PF00872 YP_276386.1 identified by similarity to SP:P38038; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF03929 YP_276387.1 similar to unknown protein of Photorhabdus and some weak similarities with other unknown proteins YP_276388.1 identified by match to protein family HMM PF00872 YP_276391.1 identified by similarity to SP:O50657; match to protein family HMM PF00278; match to protein family HMM PF02784 YP_276392.1 identified by match to protein family HMM PF00646 YP_276393.1 identified by match to protein family HMM PF01609 YP_276394.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_276395.1 identified by match to protein family HMM PF00528 YP_276396.1 identified by match to protein family HMM PF04069 YP_276397.1 identified by match to protein family HMM PF00528 YP_276398.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_276400.1 identified by match to protein family HMM PF00254; match to protein family HMM PF01346 YP_276402.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_276403.1 identified by match to protein family HMM PF01609 YP_276404.1 identified by similarity to SP:Q9HVL0 YP_276410.1 identified by match to protein family HMM PF01272 YP_276411.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_276412.1 identified by match to protein family HMM PF00589 YP_276413.1 identified by match to protein family HMM PF00589 YP_276419.1 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_276421.1 identified by similarity to PRF:2006263B; match to protein family HMM PF02274 YP_276422.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_276426.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_276428.1 identified by match to protein family HMM PF00487 YP_276429.1 identified by match to protein family HMM PF07993 YP_276430.1 identified by match to protein family HMM PF03364 YP_276431.1 identified by match to protein family HMM PF00202 YP_276437.1 identified by similarity to SP:P23752; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_276438.1 identified by similarity to GB:CAB54057.1 YP_276440.1 identified by match to protein family HMM PF02146 YP_276442.1 identified by match to protein family HMM PF01381 YP_276444.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_276445.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_276446.1 identified by similarity to GB:AAN70213.1; match to protein family HMM PF04328 YP_276447.1 identified by similarity to SP:P15078; match to protein family HMM PF02554 YP_276449.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_276450.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_276451.1 identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_276452.1 identified by match to protein family HMM PF00872 YP_276454.1 identified by match to protein family HMM PF05175 YP_276455.1 identified by similarity to GB:AAN70222.1 YP_276456.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_276457.1 identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654 YP_276458.1 identified by match to protein family HMM PF00941; match to protein family HMM PF03450 YP_276459.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_276460.1 identified by match to protein family HMM PF00860 YP_276461.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_276462.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_276463.1 identified by match to protein family HMM PF04228 YP_276465.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_276466.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189 YP_276467.1 identified by match to protein family HMM PF00583 YP_276468.1 identified by match to protein family HMM PF00850 YP_276469.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_276470.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_276471.1 identified by match to protein family HMM PF00892 YP_276472.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_276473.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573 YP_276474.1 identified by match to protein family HMM PF01936 YP_276476.1 identified by match to protein family HMM PF06790 YP_276477.1 identified by match to protein family HMM PF03372 YP_276478.1 identified by match to protein family HMM PF00872 YP_276481.1 identified by match to protein family HMM PF00872 YP_276482.1 identified by match to protein family HMM PF00226 YP_276483.1 identified by match to protein family HMM PF01042 YP_276484.1 identified by match to protein family HMM PF04816 YP_276486.1 identified by similarity to GB:BAC06606.1; match to protein family HMM PF07859 YP_276487.1 identified by similarity to SP:P11886; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_276488.1 identified by similarity to SP:P39380; match to protein family HMM PF01885 YP_276489.1 identified by match to protein family HMM PF07512 YP_276491.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_276492.1 identified by similarity to GB:AAN70345.1 YP_276493.1 identified by match to protein family HMM PF01037 YP_276494.1 identified by similarity to SP:P75966; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_276495.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_276496.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_276497.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07695; match to protein family HMM PF07696 YP_276498.2 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_276499.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_276500.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_276503.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_276504.1 identified by match to protein family HMM PF02562 YP_276505.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_276506.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_276507.1 Transfers the fatty acyl group on membrane lipoproteins YP_276508.1 identified by similarity to GB:AAN70361.1; match to protein family HMM PF02698 YP_276510.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_276511.1 identified by match to protein family HMM PF04390 YP_276512.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_276514.1 identified by match to protein family HMM TIGR02283 YP_276515.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_276516.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_276517.1 identified by match to protein family HMM PF04359 YP_276518.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_276520.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413 YP_276521.1 identified by similarity to SP:P41052; match to protein family HMM TIGR02282 YP_276522.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_276523.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_276524.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_276525.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_276526.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_276527.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_276529.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_276530.1 identified by match to protein family HMM PF00597; match to protein family HMM PF01569 YP_276532.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_276533.1 identified by match to protein family HMM PF07811 YP_276534.1 identified by match to protein family HMM PF01478 YP_276535.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_276536.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_276538.1 identified by match to protein family HMM PF00293 YP_276539.1 involved in start site selection during the initiation of translation YP_276540.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_276541.1 identified by match to protein family HMM TIGR01646 YP_276542.1 identified by match to protein family HMM PF07859 YP_276543.1 identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_276544.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703 YP_276546.1 penicillin-insensitive transglycosylase/transpeptidase YP_276547.1 identified by match to protein family HMM PF00072 YP_276548.1 identified by match to protein family HMM PF04964 YP_276549.1 identified by match to protein family HMM PF06981 YP_276550.1 identified by match to protein family HMM PF00263 YP_276552.1 identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437 YP_276553.1 identified by match to protein family HMM PF00482 YP_276554.1 identified by match to protein family HMM PF00482 YP_276555.1 identified by match to protein family HMM PF00515 YP_276557.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_276558.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_276559.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_276560.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_276561.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_276562.1 identified by match to protein family HMM TIGR02098 YP_276563.1 adjacent to DNA-binding protein Fis; identified by similarity to SP:P25717; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_276564.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_276565.1 involved in de novo purine biosynthesis YP_276566.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_276567.1 identified by similarity to SP:P48027; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07695; match to protein family HMM PF07696 YP_276568.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_276573.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_276574.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_276575.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_276576.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_276577.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_276578.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_276579.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_276580.1 identified by match to protein family HMM PF07605 YP_276581.1 identified by match to protein family HMM PF04314 YP_276583.1 identified by match to protein family HMM PF03413; match to protein family HMM PF03929 YP_276586.1 identified by match to protein family HMM PF02653; match to protein family HMM PF03130 YP_276587.1 identified by match to protein family HMM PF02653 YP_276588.1 identified by match to protein family HMM PF00005 YP_276589.1 identified by match to protein family HMM PF00005 YP_276590.1 identified by similarity to SP:Q09063; match to protein family HMM PF01774 YP_276591.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_276592.1 identified by similarity to GB:BAA15083.1; match to protein family HMM PF00583 YP_276593.1 identified by similarity to SP:P16966; match to protein family HMM PF00583 YP_276594.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_276595.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_276597.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276598.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556 YP_276600.1 identified by similarity to SP:P36928 YP_276602.1 identified by similarity to SP:P27295; match to protein family HMM PF07769 YP_276603.1 identified by match to protein family HMM PF00892 YP_276605.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein YP_276606.1 identified by match to protein family HMM PF05638 YP_276608.1 identified by match to protein family HMM PF00872 YP_276609.1 identified by match to protein family HMM PF00210 YP_276610.1 identified by match to protein family HMM PF05170 YP_276611.1 identified by match to protein family HMM PF00440 YP_276612.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_276613.1 identified by similarity to SP:P18318; match to protein family HMM PF01730 YP_276614.1 identified by similarity to SP:P18319; match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_276615.1 identified by similarity to GB:AAC46126.1; match to protein family HMM PF04955 YP_276617.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_276618.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_276619.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_276620.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_276621.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_276622.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_276623.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_276624.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_276627.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_276631.1 identified by match to protein family HMM PF00005 YP_276632.1 identified by match to protein family HMM PF02687 YP_276634.1 identified by match to protein family HMM PF03922 YP_276635.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_276636.1 identified by match to protein family HMM PF04321 YP_276637.1 identified by match to protein family HMM PF00924 YP_276638.1 identified by match to protein family HMM PF00561 YP_276639.1 identified by match to protein family HMM PF01557 YP_276640.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_276642.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_276645.1 identified by match to protein family HMM PF00480 YP_276646.1 identified by match to protein family HMM PF01547 YP_276647.1 identified by match to protein family HMM PF00528 YP_276648.1 identified by match to protein family HMM PF00528 YP_276649.1 identified by match to protein family HMM PF00005 YP_276650.1 identified by match to protein family HMM PF03009 YP_276651.1 identified by match to protein family HMM PF00459 YP_276652.1 identified by match to protein family HMM PF00331 YP_276653.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_276654.1 identified by similarity to GB:AAS39118.1 YP_276655.1 identified by similarity to SP:P13989 YP_276661.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_276662.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_276663.1 identified by match to protein family HMM PF08028 YP_276665.1 identified by match to protein family HMM PF00501 YP_276666.1 identified by similarity to GB:AAK91994.1 YP_276667.1 identified by match to protein family HMM PF00550 YP_276668.1 identified by match to protein family HMM PF07690 YP_276669.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_276672.1 identified by match to protein family HMM PF07690 YP_276673.1 identified by match to protein family HMM PF00293 YP_276674.1 identified by similarity to GB:AAO58991.1; match to protein family HMM TIGR01199 YP_276675.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_276676.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_276677.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_276678.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_276679.1 identified by similarity to SP:P26901; match to protein family HMM PF00199 YP_276680.1 is a component of the macrolide binding site in the peptidyl transferase center YP_276681.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_276682.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_276683.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_276684.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_276685.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_276686.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_276687.1 late assembly protein YP_276688.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_276689.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_276690.1 binds 5S rRNA along with protein L5 and L25 YP_276691.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_276692.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_276693.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_276694.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_276695.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_276696.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_276697.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_276698.1 one of the stabilizing components for the large ribosomal subunit YP_276699.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_276700.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_276701.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_276702.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_276703.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_276704.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_276705.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_276706.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_276707.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_276708.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_276709.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_276710.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_276711.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_276712.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_276713.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_276714.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_276715.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_276716.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_276717.1 binds directly to 23S ribosomal RNA YP_276718.1 Modulates Rho-dependent transcription termination YP_276719.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_276721.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_276722.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_276723.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_276724.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_276725.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_276726.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_276727.1 identified by match to protein family HMM PF00440 YP_276728.1 identified by match to protein family HMM PF01205 YP_276729.1 identified by match to protein family HMM PF00005 YP_276730.1 identified by match to protein family HMM PF02653 YP_276731.1 identified by match to protein family HMM PF02653 YP_276732.1 identified by match to protein family HMM PF00106 YP_276733.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_276734.1 identified by match to protein family HMM PF01699 YP_276735.1 part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+) YP_276736.1 part of the FecBCDE citrate-dependent iron (III) transport system YP_276737.1 identified by match to protein family HMM PF01032 YP_276738.1 Part of the FecBCDE citrate-dependent iron (III) transport system YP_276739.1 identified by match to protein family HMM PF02608 YP_276740.1 identified by match to protein family HMM PF03171 YP_276741.1 catalyzes the formation of inosine from adenosine YP_276743.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_276744.1 identified by match to protein family HMM PF00107 YP_276745.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_276746.1 identified by match to protein family HMM PF00403 YP_276748.1 identified by similarity to SP:P73241; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_276749.1 identified by similarity to SP:P77565; match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_276750.1 identified by match to protein family HMM PF01163 YP_276751.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_276753.1 identified by match to protein family HMM PF05277 YP_276755.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_276756.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_276757.1 identified by match to protein family HMM PF01575 YP_276762.1 identified by match to protein family HMM PF02190 YP_276763.1 identified by match to protein family HMM PF04172 YP_276764.1 identified by match to protein family HMM PF03788 YP_276765.1 identified by match to protein family HMM PF01575 YP_276766.1 identified by match to protein family HMM PF02493 YP_276767.1 identified by match to protein family HMM PF07993 YP_276768.1 identified by match to protein family HMM PF07119 YP_276769.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_276770.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_276771.1 identified by match to protein family HMM PF00171 YP_276772.1 identified by match to protein family HMM PF06751 YP_276773.1 catalyzes the formation of acetaldehyde from ethanolamine YP_276774.1 identified by match to protein family HMM PF00583 YP_276775.1 identified by match to protein family HMM PF00597 YP_276776.1 identified by match to protein family HMM PF06167 YP_276777.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_276778.1 identified by similarity to SP:Q06553; match to protein family HMM PF00717 YP_276779.1 identified by match to protein family HMM PF01381 YP_276780.1 identified by match to protein family HMM PF07507 YP_276785.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_276788.1 identified by match to protein family HMM PF00005 YP_276790.1 identified by match to protein family HMM PF01609 YP_276792.1 identified by match to protein family HMM PF00872 YP_276793.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790 YP_276794.1 identified by match to protein family HMM PF01810 YP_276795.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_276797.1 identified by match to protein family HMM PF01381; some similarities with transcriptional regulator, Cro/CI family YP_276799.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02353 YP_276800.1 identified by match to protein family HMM PF02661 YP_276802.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_276803.1 identified by similarity to SP:P06617; match to protein family HMM PF01593 YP_276804.1 identified by match to protein family HMM PF00795 YP_276805.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM TIGR02110 YP_276806.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_276807.1 possibly involved in transport of pyrroloquinoline quinone transport YP_276808.1 Required in the synthesis of PPQ, but its exact function is unknown YP_276809.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone YP_276810.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_276811.1 identified by match to protein family HMM PF00326 YP_276812.1 identified by match to protein family HMM PF01679; similar to Arabidopsis thaliana low temperature and salt responsive protein LTI6B. YP_276814.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_276815.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_276816.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_276818.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_276819.1 identified by match to protein family HMM TIGR02072 YP_276821.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_276822.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_276823.1 identified by match to protein family HMM PF00156 YP_276824.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_276825.1 identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409 YP_276826.1 identified by match to protein family HMM PF00149 YP_276827.1 identified by match to protein family HMM PF00005 YP_276828.1 identified by match to protein family HMM PF00528 YP_276829.1 identified by match to protein family HMM PF00528 YP_276830.1 identified by match to protein family HMM PF01547 YP_276831.1 identified by match to protein family HMM PF00532 YP_276832.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_276833.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_276834.1 identified by match to protein family HMM PF01842 YP_276835.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_276836.1 identified by match to protein family HMM PF00872 YP_276838.1 identified by match to protein family HMM PF00072 YP_276840.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445 YP_276841.1 identified by match to protein family HMM PF00929 YP_276844.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_276845.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_276847.1 identified by match to protein family HMM PF04069 YP_276848.1 identified by match to protein family HMM PF00528 YP_276849.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_276850.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_276851.1 identified by similarity to SP:P40875; match to protein family HMM TIGR01373 YP_276852.1 identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374 YP_276853.1 identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_276854.1 identified by similarity to SP:Q46338; match to protein family HMM PF04268; match to protein family HMM TIGR01375 YP_276855.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_276856.1 identified by similarity to SP:P46154; match to protein family HMM PF00107 YP_276857.1 identified by match to protein family HMM PF00872 YP_276859.1 identified by match to protein family HMM PF01553 YP_276860.1 identified by match to protein family HMM PF05618 YP_276861.1 identified by similarity to SP:P32105 YP_276863.1 identified by match to protein family HMM PF03929 YP_276864.1 identified by match to protein family HMM PF04773 YP_276865.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA. YP_276866.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_276867.1 catalyzes the formation of betaine from betaine aldehyde YP_276868.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_276871.1 identified by match to protein family HMM PF00186 YP_276873.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_276874.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_276875.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_276876.1 identified by match to protein family HMM PF04241 YP_276877.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_276878.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_276879.1 identified by match to protein family HMM PF02687 YP_276880.1 identified by similarity to SP:P10115; match to protein family HMM PF00005 YP_276881.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_276882.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_276883.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_276884.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_276886.1 identified by similarity to GB:AAN53956.1 YP_276887.1 identified by match to protein family HMM PF00581 YP_276888.1 identified by match to protein family HMM PF00440 YP_276889.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_276890.1 identified by similarity to SP:P00208; match to protein family HMM PF00037 YP_276892.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_276894.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_276895.1 identified by similarity to GB:AAS94977.1 YP_276896.1 identified by match to protein family HMM PF05857 YP_276897.1 identified by match to protein family HMM PF01523 YP_276899.1 identified by match to protein family HMM PF07690 YP_276900.1 identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_276901.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_276902.1 identified by match to protein family HMM PF04378 YP_276904.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_276905.1 identified by match to protein family HMM PF00355 YP_276906.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839 YP_276907.1 identified by similarity to SP:P94550 YP_276908.1 identified by match to protein family HMM PF00766 YP_276909.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_276910.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992 YP_276911.1 identified by match to protein family HMM PF01244 YP_276912.1 identified by match to protein family HMM PF07007 YP_276914.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_276916.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_276917.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01532 YP_276918.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_276919.1 identified by match to protein family HMM PF01022 YP_276920.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_276921.1 identified by match to protein family HMM PF06476 YP_276923.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_276924.1 identified by similarity to SP:Q02540; similarity to GB:CAB56468.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_276925.1 identified by match to protein family HMM PF02321 YP_276926.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_276927.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_276929.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_276930.1 identified by match to protein family HMM PF05593 YP_276931.1 identified by match to protein family HMM PF00872 YP_276934.1 identified by match to protein family HMM PF00999 YP_276935.1 identified by match to protein family HMM PF00165 YP_276936.1 identified by match to protein family HMM PF01547 YP_276937.1 identified by match to protein family HMM PF00455 YP_276938.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_276939.1 Required for the synthesis of the thiazole moiety YP_276940.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_276941.1 identified by match to protein family HMM PF07883 YP_276942.1 catalyzes the interconversion of chorismate to prephenate YP_276943.1 identified by similarity to PIR:B83006 YP_276945.1 identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_276946.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818 YP_276947.1 identified by match to protein family HMM PF00248 YP_276948.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease YP_276949.1 identified by similarity to SP:P54989 YP_276950.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_276951.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_276952.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_276953.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_276954.1 identified by match to protein family HMM PF04069 YP_276955.1 identified by match to protein family HMM PF00528 YP_276956.1 identified by match to protein family HMM PF00005 YP_276957.1 identified by similarity to SP:P10944; match to protein family HMM PF00221; match to protein family HMM TIGR01225 YP_276958.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_276959.1 identified by match to protein family HMM PF00324 YP_276960.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_276961.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_276962.1 identified by similarity to GB:AAK48830.1; match to protein family HMM PF00376; match to protein family HMM TIGR02047 YP_276964.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_276965.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_276966.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_276967.1 hydrolyzes diadenosine polyphosphate YP_276968.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_276970.1 identified by match to protein family HMM PF00585; match to protein family HMM TIGR01124 YP_276971.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_276972.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_276973.1 identified by similarity to GB:AAN70717.1; match to protein family HMM PF01436; match to protein family HMM PF06977 YP_276974.1 identified by match to protein family HMM PF01557 YP_276975.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_276976.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_276978.1 identified by match to protein family HMM PF03171 YP_276979.1 identified by similarity to GB:AAN70725.1 YP_276981.1 identified by match to protein family HMM PF01804 YP_276982.1 identified by match to protein family HMM PF00528 YP_276983.1 identified by match to protein family HMM PF00528 YP_276984.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_276985.1 identified by match to protein family HMM PF01547 YP_276986.1 identified by match to protein family HMM PF01547 YP_276987.1 identified by match to protein family HMM PF00202 YP_276988.1 identified by match to protein family HMM PF00120 YP_276989.1 identified by match to protein family HMM PF00120 YP_276990.1 identified by match to protein family HMM PF00440 YP_276992.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_276993.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease YP_276994.1 identified by match to protein family HMM PF00528 YP_276995.1 identified by match to protein family HMM TIGR01728 YP_276996.1 identified by match to protein family HMM PF00578 YP_276997.1 identified by match to protein family HMM PF03573 YP_276998.1 identified by match to protein family HMM PF04069; match to protein family HMM PF06642; match to protein family HMM TIGR01729 YP_276999.1 Part of the ABC transporter complex tauABC involved in taurine import YP_277000.1 identified by match to protein family HMM PF00528 YP_277002.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_277003.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_277004.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_277005.1 identified by match to protein family HMM PF00581 YP_277006.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_277007.1 identified by match to protein family HMM PF01551 YP_277008.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_277009.1 identified by match to protein family HMM PF04748 YP_277011.1 identified by similarity to GB:AAO58759.1 YP_277012.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_277013.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_277015.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_277016.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_277017.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_277018.1 identified by match to protein family HMM PF07690 YP_277019.1 identified by match to protein family HMM PF05170 YP_277020.1 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_277021.1 identified by similarity to SP:Q88R49; match to protein family HMM PF04362 YP_277022.1 identified by match to protein family HMM PF00872 YP_277024.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_277026.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_277027.1 identified by match to protein family HMM PF00005 YP_277028.1 identified by match to protein family HMM PF00497 YP_277029.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_277032.1 identified by match to protein family HMM PF00226 YP_277036.1 identified by similarity to SP:P51738 YP_277037.1 identified by similarity to GB:AAL47536.1 YP_277040.1 identified by similarity to GB:AAK37814.1 YP_277041.1 identified by similarity to GB:AAK37813.1 YP_277042.1 identified by similarity to GB:AAS96119.1 YP_277043.1 identified by match to protein family HMM TIGR01760 YP_277045.1 identified by similarity to SP:P51730 YP_277046.1 identified by match to protein family HMM PF03245 YP_277048.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02419 YP_277051.1 identified by match to protein family HMM TIGR01635 YP_277052.1 identified by match to protein family HMM PF06891 YP_277054.1 identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551 YP_277055.1 identified by match to protein family HMM PF06056 YP_277056.1 identified by similarity to GB:CAD15600.1 YP_277060.1 identified by similarity to GB:CAE15589.1 YP_277061.1 identified by similarity to PIR:T14978 YP_277062.1 identified by match to protein family HMM PF00583 YP_277063.1 identified by match to protein family HMM PF00078 YP_277064.1 identified by similarity to GB:CAD71767.1; match to protein family HMM PF00078 YP_277065.1 identified by similarity to GB:AAN68697.1; match to protein family HMM PF05638 YP_277067.1 identified by match to protein family HMM PF02086 YP_277069.1 identified by match to protein family HMM PF02899 YP_277070.1 identified by similarity to GB:AAN68697.1; match to protein family HMM PF05638 YP_277073.1 identified by similarity to GB:AAT35127.1; match to protein family HMM PF00665 YP_277075.1 identified by similarity to GB:AAC38658.1; match to protein family HMM PF01609 YP_277076.1 identified by match to protein family HMM PF01183 YP_277079.1 identified by match to protein family HMM PF02435 YP_277080.1 identified by match to protein family HMM PF02638 YP_277082.1 identified by match to protein family HMM PF07690 YP_277083.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_277084.1 identified by similarity to GB:AAP29975.1; match to protein family HMM PF04380 YP_277085.1 identified by match to protein family HMM PF00543 YP_277086.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_277087.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_277088.1 identified by similarity to GB:AAN70797.1 YP_277089.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_277090.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_277091.1 identified by match to protein family HMM PF04340 YP_277092.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_277093.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_277095.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_277096.1 identified by match to protein family HMM PF06945 YP_277097.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation YP_277098.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_277101.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system YP_277102.1 identified by match to protein family HMM PF02222; match to protein family HMM TIGR00768 YP_277103.1 identified by match to protein family HMM PF05618 YP_277104.1 identified by match to protein family HMM PF00563 YP_277105.1 identified by match to protein family HMM PF01479 YP_277106.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_277107.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_277109.1 identified by match to protein family HMM PF00583 YP_277112.1 identified by match to protein family HMM PF00583 YP_277113.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_277114.1 identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409 YP_277115.1 identified by match to protein family HMM PF00528 YP_277116.1 identified by match to protein family HMM PF00528 YP_277117.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_277119.1 identified by match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_277120.1 identified by match to protein family HMM PF01266 YP_277121.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_277122.1 identified by match to protein family HMM PF02826 YP_277123.1 identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_277125.1 identified by match to protein family HMM PF01037 YP_277126.1 identified by match to protein family HMM PF07605 YP_277127.1 identified by match to protein family HMM PF00015 YP_277128.1 identified by match to protein family HMM PF00005 YP_277129.1 identified by match to protein family HMM PF00528 YP_277130.1 identified by match to protein family HMM PF00528 YP_277131.1 identified by match to protein family HMM PF00496 YP_277132.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_277133.1 identified by match to protein family HMM PF02472 YP_277134.1 identified by match to protein family HMM PF01618 YP_277135.1 identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_277136.1 identified by similarity to SP:P39171; match to protein family HMM PF00266 YP_277137.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_277138.1 identified by similarity to GB:AAO53820.1 YP_277140.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_277141.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_277144.1 identified by match to protein family HMM PF00353 YP_277145.1 identified by match to protein family HMM PF00872 YP_277148.1 identified by similarity to GB:CAD16914.1 YP_277149.1 identified by match to protein family HMM PF03747 YP_277152.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_277155.1 identified by match to protein family HMM PF03527; match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_277156.1 hypothetical gene YP_277157.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_277163.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517 YP_277164.1 identified by match to protein family HMM PF00924 YP_277165.1 identified by match to protein family HMM PF00015 YP_277166.1 identified by match to protein family HMM PF06097 YP_277167.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_277168.1 identified by match to protein family HMM PF00248 YP_277169.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_277172.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF07993; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746 YP_277175.1 identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222 YP_277176.1 identified by similarity to SP:Q59764 YP_277177.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_277178.1 identified by similarity to GB:AAC38773.1; match to protein family HMM PF02550 YP_277180.1 identified by match to protein family HMM TIGR02448 YP_277181.1 identified by match to protein family HMM TIGR02448 YP_277182.1 identified by match to protein family HMM TIGR02448 YP_277184.1 identified by similarity to PIR:E82976 YP_277186.1 identified by match to protein family HMM PF00216 YP_277187.1 identified by similarity to SP:P42454; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_277188.1 identified by similarity to SP:P00268; match to protein family HMM PF00301 YP_277189.1 identified by match to protein family HMM PF04345 YP_277190.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_277191.1 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_277192.1 identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518 YP_277193.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_277194.1 identified by match to protein family HMM PF01551 YP_277195.1 identified by match to protein family HMM PF00072 YP_277196.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_277197.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_277198.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_277199.1 identified by match to protein family HMM PF00528 YP_277200.1 identified by match to protein family HMM TIGR02136 YP_277201.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_277202.1 identified by match to protein family HMM PF03061 YP_277203.1 identified by match to protein family HMM PF01263 YP_277205.1 identified by match to protein family HMM PF04226 YP_277206.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_277207.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_277209.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_277210.1 catalyzes the formation of fumarate from aspartate YP_277211.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_277212.1 identified by similarity to SP:P18840; match to protein family HMM PF00710 YP_277213.1 identified by match to protein family HMM PF05249 YP_277214.1 identified by match to protein family HMM PF04143 YP_277215.1 identified by match to protein family HMM PF00392 YP_277216.1 identified by match to protein family HMM PF04299 YP_277217.1 identified by match to protein family HMM PF00583 YP_277218.1 identified by match to protein family HMM PF00583 YP_277219.1 catalyzes the formation of oxaloacetate from pyruvate YP_277220.1 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate YP_277221.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_277222.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_277224.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_277225.1 identified by match to protein family HMM PF04280 YP_277228.1 identified by match to protein family HMM PF03061 YP_277229.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_277231.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_277234.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_277236.1 identified by similarity to SP:Q46929; match to protein family HMM PF01520 YP_277237.1 identified by similarity to GB:AAD51983.1 YP_277238.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_277239.1 identified by match to protein family HMM PF02353 YP_277240.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_277241.1 identified by match to protein family HMM PF01145 YP_277242.1 identified by match to protein family HMM PF01145 YP_277243.1 identified by match to protein family HMM PF01145 YP_277245.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_277247.1 identified by match to protein family HMM PF01757 YP_277248.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_277249.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_277250.1 identified by match to protein family HMM PF00005 YP_277251.1 identified by match to protein family HMM PF00528 YP_277252.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_277253.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_277255.1 identified by similarity to SP:P60355; match to protein family HMM PF05067 YP_277256.1 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_277259.1 identified by match to protein family HMM PF00903 YP_277260.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_277261.1 identified by match to protein family HMM PF00005 YP_277262.1 identified by match to protein family HMM PF01497 YP_277263.1 identified by match to protein family HMM PF01032 YP_277264.1 identified by match to protein family HMM PF02264 YP_277265.1 identified by match to protein family HMM PF01547 YP_277266.1 identified by match to protein family HMM PF00528 YP_277267.1 identified by match to protein family HMM PF00528 YP_277268.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_277269.1 identified by similarity to SP:P07819; match to protein family HMM PF00251; match to protein family HMM TIGR01322 YP_277270.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_277271.1 identified by match to protein family HMM PF01638 YP_277273.1 identified by match to protein family HMM PF00892 YP_277275.1 identified by match to protein family HMM PF00872 YP_277276.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_277277.1 identified by match to protein family HMM PF00455 YP_277278.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_277279.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_277280.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_277281.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_277282.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_277283.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_277284.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_277285.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_277286.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_277287.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation YP_277288.1 identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_277289.1 identified by similarity to SP:O05189; match to protein family HMM PF01656 YP_277290.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_277291.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_277292.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_277293.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_277294.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_277295.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_277296.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_277297.1 identified by similarity to SP:P24607; match to protein family HMM PF04986 YP_272130.1 identified by match to protein family HMM PF03090 YP_272131.1 identified by similarity to PIR:E85625 YP_272132.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_272133.1 identified by match to protein family HMM PF00295 YP_272140.1 identified by similarity to GB:CAD17629.1; match to protein family HMM PF00872 YP_272145.1 identified by similarity to PIR:A85833 YP_272147.1 identified by similarity to GB:AAO59119.1 YP_272150.1 identified by match to protein family HMM PF02435 YP_272152.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_272153.1 identified by match to protein family HMM PF02371 YP_272155.1 identified by similarity to GB:BAA87060.1; match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_272157.1 identified by match to protein family HMM PF01850 YP_272159.1 identified by similarity to GB:AAQ17650.1 YP_272162.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272167.1 identified by match to protein family HMM PF01656 YP_272169.1 identified by similarity to GB:AAO58992.1; match to protein family HMM PF01695 YP_272171.1 identified by match to protein family HMM PF01850; match to protein family HMM TIGR00305 YP_272176.1 identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_272177.1 identified by similarity to GB:CAC86794.1; match to protein family HMM PF00665 YP_272178.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_272179.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_272180.1 identified by match to protein family HMM PF00577 YP_272181.1 identified by match to protein family HMM PF05775 YP_272184.1 identified by match to protein family HMM PF01609 YP_272185.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_272186.1 identified by similarity to PIR:E85625 YP_272187.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_272188.1 identified by match to protein family HMM PF00295 YP_272192.1 identified by match to protein family HMM PF00239 YP_272193.1 identified by similarity to GB:BAC41601.1 YP_272194.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_272195.1 identified by match to protein family HMM PF01609 YP_272196.1 identified by similarity to SP:P24607; match to protein family HMM PF04986 YP_272199.1 identified by similarity to GB:CAD42759.1; match to protein family HMM PF00665 YP_272200.1 identified by match to protein family HMM PF01527 YP_272203.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_272204.1 identified by match to protein family HMM TIGR01552 YP_272205.1 identified by match to protein family HMM PF05016 YP_272207.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_272209.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_272210.1 identified by match to protein family HMM PF01609 YP_272211.1 identified by similarity to SP:P03015; match to protein family HMM PF00239; match to protein family HMM PF02796 YP_272213.1 identified by similarity to GB:AAO72123.1; match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_272218.1 identified by match to protein family HMM PF00202 YP_272219.1 identified by similarity to PRF:1410222D.0 YP_272222.1 identified by match to protein family HMM PF00300 YP_272223.1 identified by match to protein family HMM PF05655 YP_272224.1 identified by match to protein family HMM PF01527 YP_272226.1 identified by match to protein family HMM PF00872 YP_272227.1 identified by match to protein family HMM PF01609 YP_272228.1 identified by similarity to SP:P24607 YP_272229.1 identified by match to protein family HMM PF05394 YP_272230.1 identified by match to protein family HMM TIGR01586 YP_272232.1 identified by similarity to PIR:H83161 YP_272235.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_272236.1 identified by match to protein family HMM PF03543; match to protein family HMM TIGR01586 YP_272238.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_272241.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_272242.1 identified by match to protein family HMM PF01850 YP_272243.1 identified by similarity to SP:Q52561 YP_272246.1 identified by match to protein family HMM PF01548 YP_272247.1 identified by similarity to GB:AAO56533.1; match to protein family HMM PF00665 YP_272249.1 identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_272251.1 identified by match to protein family HMM PF03135 YP_272253.1 identified by match to protein family HMM PF03524 YP_272257.1 identified by match to protein family HMM PF03090 YP_272258.1 identified by match to protein family HMM PF00717 YP_272259.1 identified by match to protein family HMM PF00817 YP_272261.1 identified by similarity to GB:AAD40345.1; match to protein family HMM PF05973 YP_272266.1 identified by match to protein family HMM PF02586 YP_272269.1 identified by match to protein family HMM PF00872 YP_272270.1 identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552 YP_272271.1 identified by similarity to GB:AAO52832.1; match to protein family HMM PF06769; match to protein family HMM TIGR02116 YP_272272.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_272273.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_272274.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate YP_272275.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_272277.1 identified by match to protein family HMM PF01381 YP_272280.1 identified by similarity to GB:AAD56611.1; match to protein family HMM PF01464 YP_272283.1 identified by match to protein family HMM PF03135 YP_272284.1 identified by match to protein family HMM PF07996 YP_272286.1 identified by similarity to GB:AAL04064.1; match to protein family HMM PF04610 YP_272288.1 identified by match to protein family HMM PF04335 YP_272289.1 identified by match to protein family HMM PF03524 YP_272290.1 identified by similarity to GB:AAF77170.1; match to protein family HMM PF03743 YP_272291.1 identified by similarity to SP:P05360; match to protein family HMM PF00437 YP_272296.1 identified by similarity to SP:Q00185; match to protein family HMM PF02534 YP_272297.1 identified by similarity to PIR:A41865 YP_272298.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056 YP_272300.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_272305.1 identified by similarity to SP:Q00192 YP_272306.1 identified by match to protein family HMM PF00392 YP_272310.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385 YP_272311.1 identified by match to protein family HMM PF04221; match to protein family HMM TIGR02384 YP_272312.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796; match to protein family HMM TIGR01199 YP_272313.1 identified by match to protein family HMM PF00665