-- dump date   	20140620_020229
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
1181650	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; competence protein comM, truncation; similar to SP:P45049; identified by sequence similarity; putative
1181668	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; magnesium chelatase family protein, truncation; similar to SP:P45049; identified by sequence similarity; putative
1181796	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; transcriptional regulator, authentic point mutation; similar to SP:Q47129, GB:U00018, and PID:467066; identified by sequence similarity; putative
1181798	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; phenylacetaldoxime dehydratase, truncation; similar to GP:6855269; identified by sequence similarity; putative
1181799	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; There appears to be a deletion which extends upstream into the C-terminus of the neighboring ORF.; conserved hypothetical protein, truncation; similar to GP:6690107, and GP:6014667; identified by sequence similarity; putative
1181815	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved domain protein, authentic frameshift; similar to GP:15155846; identified by sequence similarity; putative
1181894	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; restriction enzyme BgcI alpha subunit, putative, authentic point mutation; similar to SP:Q07605, GB:X51417, SP:P11475, and PID:36611; identified by sequence similarity; putative
1181957	This region contains an authentic frame shift and is not the result of a sequencing artifact; TonB-dependent receptor, authentic frameshift; similar to GP:6019468; identified by sequence similarity; putative
4363297	PSPTO0473; this region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by similarity to the C-terminal regions of HopAS1 in Pseudomonas syringae phaseolicola
1182142	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; type IV secretion system protein, truncation; similar to GP:8163889; identified by sequence similarity; putative
1182459	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; site-specific recombinase, phage integrase family, truncation; similar to GP:9930479, and GP:10945089; identified by sequence similarity; putative
1182470	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; membrane protein, putative, interruption-C; similar to GP:16505354; identified by sequence similarity; putative
1182475	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; membrane protein, putative, interruption-N; similar to GP:16505354; identified by sequence similarity; putative
3974642	type III effector protein hopAT1; this region contains premature stop codons or frameshifts; identified by sequence similarity, degenerate; similar to PSPPH_5225 (GI:76008346)
3974643	conserved hypothetical gene; identified by sequence similarity
3974644	This region contains a gene with one or more premature stops or frameshifts; conserved hypothetical gene; similar to GI:63255405, GI:68637911
3974645	hypothetical gene; identifed by sequence similarity
1182533	This region is disrupted by an IS element insertion, interruption-C; region is similar to the C-terminal region of HopAG1 in Pseudomonas syringae pv syringae; identified by match to PFAM protein family HMM PF00293
1182636	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; methyl-accepting chemotaxis protein, putative, degenerate; similar to GP:4235392, and GP:4235392; identified by sequence similarity; putative
1182652	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; hypothetical protein, interruption-N; similar to GP:8037785; identified by sequence similarity; putative
1182655	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; hypothetical protein, interruption-C; similar to GP:9187578; identified by sequence similarity; putative
1182698	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; site-specific recombinase, phage integrase family, truncation; identified by match to PFAM protein family HMM PF00589
1182798	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; ABC transporter, permease protein, degenerate; similar to GP:15139998; identified by sequence similarity; putative
1182799	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; ABC transporter, permease protein, authentic point mutation
1182861	This region contains an authentic frame shift and is not the result of a sequencing artifact; Although this gene is disrupted by an insertion sequence, it also lacks a C-terminus.; insecticidal toxin protein, interruption-N; similar to GP:3265044, and GP:16416915; identified by sequence similarity; putative
1182864	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; Although this gene is disrupted by an insertion sequence, it also lacks a C-terminus.; insecticidal toxin protein, degenerate; similar to GP:9963680, and GP:16416915; identified by sequence similarity; putative
1182915	This region contains an authentic frame shift and is not the result of a sequencing artifact; sensory box histidine kinase, authentic frameshift; identified by match to TIGR protein family HMM TIGR01386
1182950	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; fimbrial biogenesis usher protein, interruption-N; similar to GP:9946903, and SP:P30130; identified by sequence similarity; putative
1182952	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; fimbrial biogenesis usher protein, interruption-C; similar to GP:9946903, and SP:P43662; identified by sequence similarity; putative
3974646	conserved gene; similar to PSTO_B0005.1
3974647	identified by sequence similarity
1183512	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; similar to GP:15074795; identified by sequence similarity; putative
1183835	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; electron transfer flavoprotein-ubiquinone oxidoreductase, truncation; similar to GP:9949050, and SP:Q16134; identified by sequence similarity; putative
1183903	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; conserved hypothetical protein, authentic point mutation; identified by Glimmer2; putative
1183909	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; similar to GP:9948948; identified by sequence similarity; putative
1183978	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; response regulator, interruption-C; identified by match to PFAM protein family HMM PF00196
1183980	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; response regulator, interruption-N; identified by match to TIGR protein family HMM TIGR01387
1184062	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; urease, alpha subunit, authentic point mutation; similar to GP:14599161, and SP:P77837; identified by sequence similarity; putative
1184111	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; conserved hypothetical protein, interruption-C; similar to GP:5733704, and SP:P44276; identified by sequence similarity; putative
1184114	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; conserved hypothetical protein, interruption-N; similar to SP:P44276; identified by sequence similarity; putative
1184192	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; conserved hypothetical protein, interruption-N; identified by Glimmer2; putative
1184194	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; conserved hypothetical protein, interruption-C; identified by Glimmer2; putative
1184234	This region contains an authentic frame shift and is not the result of a sequencing artifact; glutamine synthetase, authentic frameshift; similar to SP:P31592, GB:M17589, GB:M24787, GB:M24788, GB:M24791, GB:M24789, GB:M18114, GB:M20912, GB:M20911, SP:P07101, PID:339681, PID:37127, PID:548155, PID:548156, and PID:556224; identified by sequence similarity; putative
1184277	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; identified by Glimmer2; putative
1184305	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; malate:quinone oxidoreductase, authentic point mutation; similar to SP:P33940; identified by sequence similarity; putative
1184358	This region contains an authentic frame shift and is not the result of a sequencing artifact; maltose ABC transporter, ATP-binding protein, authentic frameshift; similar to GP:2293417; identified by sequence similarity; putative
1184408	This region contains an authentic frame shift and is not the result of a sequencing artifact; AcrB/AcrD/AcrF family protein, authentic frameshift; similar to SP:P10805, GB:X13548, PID:41354, GB:U00096, PID:1651235, PID:1778480, and PID:1786778; identified by sequence similarity; putative
1184467	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; peptide ABC transporter, ATP-binding protein, authentic point mutation; similar to GP:15158466; identified by sequence similarity; putative
1184491	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; conserved hypothetical protein, authentic point mutation; similar to GP:15130926; identified by sequence similarity; putative
1184502	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; acyl carrier protein phosphodiesterase, authentic point mutation; similar to SP:P41407; identified by sequence similarity; putative
1184536	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; GGDEF domain protein/EAL domain protein, degenerate; similar to GP:15077777; identified by sequence similarity; putative
1184540	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; Possibly the C-terminus of a gene interrupted by the adjacent insertion sequence. However, could not identify the N-terminus.; oxidoreductase, short chain dehydrogenase/reductase family, truncation; identified by match to TIGR protein family HMM TIGR01832
1184602	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved domain protein, authentic frameshift; similar to GP:13094175, and GP:13094175; identified by sequence similarity; putative
1184668	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; conserved hypothetical protein, interruption-C; similar to GP:17429582, and GP:17429582; identified by sequence similarity; putative
1184671	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; conserved hypothetical protein, interruption-N; similar to GP:17429582; identified by sequence similarity; putative
1184699	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; This gene is missing the N-terminal and C-terminal residues.; transposase, IS66 family, degenerate; similar to GP:13926135; identified by sequence similarity; putative
1184752	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; conserved hypothetical protein, degenerate; similar to GP:15130928; identified by sequence similarity; putative
1184754	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; amino acid ABC transporter, ATP-binding protein, truncation
1184810	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; cobalamin biosynthesis protein CbiG, truncation; identified by match to PFAM protein family HMM PF01890
1184815	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; conserved hypothetical protein; similar to GB:J05004, SP:P13670, and PID:155155; identified by sequence similarity; putative
1184835	This region contains an authentic frame shift and is not the result of a sequencing artifact; PqiA family protein, authentic frameshift; similar to SP:P43670; identified by sequence similarity; putative
1184842	This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, LysR family, authentic frameshift; similar to SP:P75836; identified by sequence similarity; putative
1184863	This region contains an authentic frame shift and is not the result of a sequencing artifact; 4-hydroxy-2-oxovalerate aldolase, putative, authentic frameshift; similar to GP:4104771, and SP:P51017; identified by sequence similarity; putative
1184871	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; adhesion protein, putative, authentic point mutation; similar to GP:23573417; identified by sequence similarity; putative
1184892	This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, GntR family, authentic frameshift
1184913	This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, GntR family, authentic frameshift; similar to GP:15158581; identified by sequence similarity; putative
1185100	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; membrane protein, putative, authentic point mutation; similar to GB:L07597, and PID:292457; identified by sequence similarity; putative
1185222	This region contains an authentic frame shift and is not the result of a sequencing artifact; glycolate oxidase, iron-sulfur subunit, authentic frameshift; similar to GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; putative
1185276	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; IS52, transposase, interruption-N
1185279	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element.; IS52, transposase, interruption-C; similar to GP:8885851, and GP:1196750; identified by sequence similarity; putative
1185292	This region contains an authentic frame shift and is not the result of a sequencing artifact; cytochrome c-type biogenesis protein CycH; similar to GB:U07992, SP:P01842, PID:1335156, PID:1335158, PID:1335174, PID:186127, PID:2114277, PID:2114297, PID:2114299, PID:33700, PID:386814, PID:468249, PID:553491, and PID:871288; identified by sequence similarity; putative
1185307	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; oxidoreductase, putative, authentic point mutation; similar to GP:15159342; identified by sequence similarity; putative
1185318	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; IS52, transposase, truncation; similar to GP:8885851, and GP:1196750; identified by sequence similarity; putative
1185599	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; identified by Glimmer2; putative
1185613	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; host specificity protein J, truncation; similar to SP:P03749; identified by sequence similarity; putative
1185614	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; portal protein, truncation; similar to SP:P17058, PID:46001, and PID:46126; identified by sequence similarity; putative
1185615	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; terminase, large subunit, truncation
1185680	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; similar to GP:17865431, SP:P12609, and PID:151636; identified by sequence similarity; putative
1185768	This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, LysR family, authentic frameshift; identified by match to PFAM protein family HMM PF01047
1185930	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; oxidoreductase, short chain dehydrogenase/reductase family, degenerate; similar to GP:16151914; identified by sequence similarity; putative
1185949	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; sulfate permease family protein, interruption-N
1185952	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; sulfate permease family protein, interruption-C; identified by match to PFAM protein family HMM PF01740
1185954	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; site-specific recombinase, phage integrase family, degenerate; similar to GP:3059142, and GP:21114373; identified by sequence similarity; putative
1186022	This region contains an authentic frame shift and is not the result of a sequencing artifact; insecticidal toxin protein, putative, authentic frameshift; similar to GP:3265035, and GP:16416913; identified by sequence similarity; putative
1186248	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; peptide ABC transporter, ATP-binding protein, interruption-N; similar to SP:P37313; identified by sequence similarity; putative
1186251	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; peptide ABC transporter, ATP-binding protein, interruption-C; similar to GP:13516339, and SP:P37313; identified by sequence similarity; putative
4363298	PSPTO4591; this region contains an authentic point mutation causing a premature stop and is not the result of a sequencing artifact; identified by similarity to the C-terminal regions of HopO1-1 and HopO1-2; identified by Glimmer2; putative
1186361	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; This gene assignment is based in part on the presence of a zinc binding domain as indicated by an HMM match to PF04810, and its location adjacent to a gene for resolvase.; integrase, degenerate; similar to GP:6690109; identified by sequence similarity; putative
1186362	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; resolvase, degenerate; similar to GP:2921258; identified by sequence similarity; putative
1186375	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; MATE efflux domain protein, degenerate; similar to SP:P18205, and SP:P18205; identified by sequence similarity; putative
1186409	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an IS element insertion.; HopD protein, interruption-C; previously known as HopPtoD-related; similar to GP:14905934; identified by sequence similarity; putative
4238444	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by two IS element insertions.; HopH protein, interruption-N; identified by sequence similarity; putative
1186411	this region is disrupted by an IS element insertion, interruption-N; this region is similar to the N-terminal region of a transposase protein; identified by sequence similarity; putative
1186414	this region is disrupted by an IS element insertion, interruption-C; this region is similar to the C-terminal region of a transposase protein; identified by sequence similarity; putative
5666587	This gene is disrupted by two IS element insertions; HopH protein, interruption-C; identified by sequence similarity; putative
1186432	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; ATP-dependent helicase HrpB, degenerate; similar to SP:P11394, SP:P27288, GB:X59809, and PID:48038; identified by sequence similarity; putative
1186741	This region contains an authentic frame shift and is not the result of a sequencing artifact; Rhs element Vgr protein, authentic frameshift; similar to GP:17431099; identified by sequence similarity; putative
1186828	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; poly(3-hydroxyalkanoate) polymerase, authentic point mutation; similar to GP:4062968, and GP:17402513; identified by sequence similarity; putative
1187036	This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; identified by Glimmer2; putative
1187126	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; The annotation is based in part on positional information.; Rhs family protein, truncation; similar to GP:15130940, and SP:P24211; identified by sequence similarity; putative
1187128	This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; The annotation is based in part on positional information.; Rhs family protein, degenerate; similar to GP:15130940, and GP:16501575; identified by sequence similarity; putative
1187155	This region contains an authentic frame shift and is not the result of a sequencing artifact; NAD(P) transhydrogenase, alpha subunit, authentic frameshift; similar to SP:P07001; identified by sequence similarity; putative
1187262	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; membrane protein, interruption-C
1187264	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; membrane protein, interruption-N; identified by match to PFAM protein family HMM PF02418
1187266	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; response regulator, interruption-N; similar to GB:M98830, SP:P25520, GB:X59940, PID:146073, PID:42026, GB:U00096, PID:1651627, PID:1651636, PID:1787488, and PID:1805513; identified by sequence similarity; putative
1187269	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; response regulator, interruption-C
1187285	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; transposition protein, TnsC-related protein, truncation; similar to SP:P05846; identified by sequence similarity; putative
1187286	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; transposase, TnsB-related protein, truncation; similar to SP:P13989, GB:M27382, PID:1552513, PID:292777, PID:37647, PID:493024, PID:563891, and PID:975609; identified by sequence similarity; putative
1187382	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; ISPsy3, transposase, truncation
1187389	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; RulB protein, truncation; similar to GP:1399356,  and GP:1399356; identified by sequence similarity; putative
1187392	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; ISPs1, transposase OrfA, authentic point mutation; similar to GP:5912506,  and GP:13620696; identified by sequence similarity; putative
1187395	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; ISPssy, transposase, truncation; similar to GP:4514540,  and GP:4514540; identified by sequence similarity; putative
1187416	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; transcriptional regulator, GntR family, interruption-N; identified by match to PFAM protein family HMM PF00392
1187419	This region contains an authentic frame shift and is not the result of a sequencing artifact; This gene is disrupted by an insertion sequence.; transcriptional regulator, GntR family, interruption-C; similar to GP:13926144; identified by sequence similarity; putative
1187443	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; Annotation is based in part on position in a cluster of transfer genes.; traT protein, truncation; similar to GP:4512503; identified by sequence similarity; putative
1187310	This region contains an authentic frame shift and is not the result of a sequencing artifact; ultraviolet light resistance protein B, interruption-N; similar to GP:1399356,  and GP:1399356; identified by sequence similarity; putative
1187313	This region contains an authentic frame shift and is not the result of a sequencing artifact; ultraviolet light resistance protein B, interruption-C; similar to GP:1399356,  and GP:1399356; identified by sequence similarity; putative
1187365	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; ultraviolet light resistance protein RulA, truncation; similar to GP:5912506,  and GP:11640725; identified by sequence similarity; putative
4074385	This region contains a match to at least one other gene that is not full length, and is not the result of a sequencing artifact; ultraviolet light resistance protein RulB, truncation; identified by sequence similarity; putative'
1187369	This region contains a match to at least one other gene that is not full length,and is not the result of a sequencing artifact; ISPsy3, transposase, truncation