-- dump date   	20140620_021102
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_941475.1	KEGG: ppr:PBPRB1782 putative transposase
YP_941476.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_941477.1	heat shock protein involved in degradation of misfolded proteins
YP_941478.1	heat shock protein involved in degradation of misfolded proteins
YP_941479.1	PFAM: Sporulation domain protein; KEGG: pat:Patl_4190 sporulation related
YP_941480.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_941481.1	KEGG: she:Shewmr4_0592 hypothetical protein
YP_941482.1	PFAM: UvrD/REP helicase; KEGG: cps:CPS_0080 DNA helicase II
YP_941483.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vpa:VP2980 hypothetical protein
YP_941484.1	TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sdy:SDY_3934 site-specific recombinase
YP_941485.1	PFAM: Uncharacterised conserved protein UCP028301; KEGG: vfi:VF1004 hypothetical cytosolic protein
YP_941486.1	PFAM: protein of unknown function DUF877; KEGG: pen:PSEEN0524 hypothetical protein
YP_941487.1	PFAM: protein of unknown function DUF796; KEGG: vpa:VP1393 BfdA
YP_941488.1	KEGG: gme:Gmet_3310 lipoprotein, putative
YP_941489.1	PFAM: protein of unknown function DUF876; KEGG: gme:Gmet_3311 protein of unknown function DUF876
YP_941490.1	KEGG: bte:BTH_II0856 hypothetical protein
YP_941491.1	KEGG: gme:Gmet_0274 hypothetical protein
YP_941492.1	KEGG: pst:PSPTO_2544 hypothetical protein
YP_941493.1	PFAM: protein of unknown function DUF796; KEGG: bte:BTH_II0868 hcp protein
YP_941495.1	PFAM: protein of unknown function DUF879; KEGG: gme:Gmet_3313 protein of unknown function DUF879
YP_941496.1	PFAM: protein of unknown function DUF1305; KEGG: bte:BTH_II0865 protein of unknown function (DUF1305) superfamily
YP_941497.1	PFAM: Rhs element Vgr protein; KEGG: bma:BMAA0737 rhs element Vgr protein
YP_941498.1	PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein
YP_941499.1	PFAM: pentapeptide repeat protein; KEGG: bpm:BURPS1710b_A0543 hypothetical protein
YP_941500.1	KEGG: bpm:BURPS1710b_A1706 hypothetical protein
YP_941501.1	KEGG: bbr:BB0797 hypothetical protein
YP_941502.1	PFAM: Carbohydrate-binding family V/XII; Rhs element Vgr protein; KEGG: bma:BMAA0737 rhs element Vgr protein
YP_941503.1	PFAM: pentapeptide repeat protein; KEGG: bbr:BB0795 hypothetical protein
YP_941504.1	PFAM: pentapeptide repeat protein; KEGG: bpm:BURPS1710b_A0543 hypothetical protein
YP_941505.1	KEGG: bps:BPSS0184 hypothetical protein
YP_941506.1	KEGG: bpa:BPP0711 hypothetical protein
YP_941507.1	PFAM: histidine kinase, HAMP region domain protein; KEGG: ret:RHE_CH02648 putative transcriptional regulator protein
YP_941509.1	PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB1643 putative inner membrane transport protein
YP_941510.1	KEGG: sar:SAR2170 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; D-alanine--D-alanine ligase domain protein
YP_941511.1	KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component
YP_941513.1	PFAM: diaminopimelate epimerase; KEGG: pat:Patl_4074 diaminopimelate epimerase
YP_941514.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pat:Patl_4073 diaminopimelate decarboxylase
YP_941515.1	PFAM: Frataxin family protein; KEGG: plu:plu4642 cyaY protein, which belongs to the frataxin family
YP_941516.1	KEGG: hdu:HD0453 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase
YP_941517.1	KEGG: sdn:Sden_3050 protease-associated PA
YP_941518.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rru:Rru_A2127 serine 3-dehydrogenase
YP_941519.1	PFAM: regulatory protein GntR, HTH; KEGG: csa:Csal_0157 transcriptional regulator, GntR family
YP_941520.1	KEGG: bxe:Bxe_B0694 ABC taurine transporter, periplasmic ligand binding protein; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3
YP_941521.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B0693 ABC taurine transporter, ATPase subunit
YP_941522.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B0692 ABC taurine transporter, inner membrane subunit
YP_941523.1	PFAM: protein of unknown function DUF81; KEGG: csa:Csal_0160 protein of unknown function DUF81
YP_941524.1	PFAM: aminotransferase class-III; KEGG: rde:RD1_0981 taurine--pyruvate aminotransferase
YP_941525.1	PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568
YP_941526.1	KEGG: sde:Sde_3681 pseudouridine synthase, Rsu; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase
YP_941527.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_941528.1	PFAM: ribosomal protein L28; KEGG: pat:Patl_0048 ribosomal protein L28
YP_941529.1	PFAM: DNA repair protein RadC; KEGG: pat:Patl_0046 DNA repair protein RadC
YP_941530.1	KEGG: vch:VC0215 DNA/pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein
YP_941531.1	KEGG: she:Shewmr4_3599 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase
YP_941532.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_941533.1	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
YP_941534.2	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_941535.1	PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: stt:t2966 conserved hypothetical protein
YP_941536.1	PFAM: protein of unknown function DUF339; KEGG: cps:CPS_4131 TPR repeat protein
YP_941537.1	KEGG: yps:YPTB2898 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_941538.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_941539.1	PFAM: Anti sigma-E protein RseA family protein; KEGG: sfr:Sfri_2934 anti sigma-E protein RseA domain protein
YP_941540.1	PFAM: MucB/RseB family protein; KEGG: cps:CPS_4127 sigma-E factor regulatory protein RseB
YP_941541.1	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: shm:Shewmr7_2933 positive regulator of sigma E, RseC/MucC
YP_941542.1	PFAM: transposase, IS4 family protein; KEGG: sdn:Sden_3399 transposase, IS4
YP_941543.1	KEGG: hso:HS_0309 conserved hypothetical protein
YP_941544.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_941545.1	PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: vfi:VF2536 Sua5 protein
YP_941546.1	KEGG: ppr:PBPRA3574 hypothetical phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_941547.1	PFAM: DNA topoisomerase, type IA, zn finger domain protein; KEGG: pha:PSHAa0027 DNA topoisomerase
YP_941548.1	PFAM: protein of unknown function DUF494; KEGG: ilo:IL0020 hypothetical protein
YP_941549.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: pat:Patl_0025 DNA protecting protein DprA
YP_941550.1	PFAM: Peptidoglycan-binding LysM; KEGG: sfr:Sfri_0025 peptidoglycan-binding LysM
YP_941551.1	KEGG: vvy:VV3225 N-formylmethionyl-tRNA deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_941552.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: she:Shewmr4_0028 methionyl-tRNA formyltransferase
YP_941553.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: vch:VC0044 Sun protein
YP_941554.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_941555.1	PFAM: cation transporter; KEGG: vpa:VP3046 potassium uptake protein TrkH
YP_941556.1	PFAM: protein of unknown function DUF195; KEGG: ssn:SSO_4007 putative alpha helix chain
YP_941558.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_941559.1	KEGG: ppr:PBPRB0059 putative transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_941560.1	PFAM: putative sugar-binding domain protein; KEGG: vfi:VFA0400 PTS system, mannitol-specific IIBC component
YP_941561.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: vpa:VP0370 PTS system, mannitol-specific IIABC component
YP_941562.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: ppr:PBPRB0362 putative mannitol-1-phosphate 5-dehydrogenase
YP_941563.1	Acts as a repressor of the mtlAD operon
YP_941564.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: msu:MS2079 lactate dehydrogenase and related dehydrogenases
YP_941565.1	KEGG: mag:amb2360 hypothetical protein
YP_941566.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_941567.1	PFAM: Hsp33 protein; KEGG: eca:ECA4105 heat shock protein (33 kDa chaperonin)
YP_941568.1	PFAM: RNA-binding S4 domain protein; KEGG: vfi:VF2476 heat shock protein 15
YP_941569.1	TIGRFAM: general secretion pathway protein C; PFAM: PDZ/DHR/GLGF domain protein; KEGG: sfr:Sfri_0104 general secretion pathway protein C
YP_941570.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: cps:CPS_4591 general secretion pathway protein D
YP_941571.1	KEGG: sfr:Sfri_0106 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_941572.1	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: shm:Shewmr7_0153 general secretion pathway protein F
YP_941573.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: sfr:Sfri_0108 general secretion pathway protein G
YP_941574.1	KEGG: cps:CPS_4587 general secretion pathway protein H
YP_941575.1	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: eca:ECA3104 general secretion pathway protein I
YP_941576.1	TIGRFAM: general secretion pathway protein J; KEGG: ppr:PBPRA3475 putative Type II secretory pathway, component EpsJ
YP_941577.1	PFAM: General secretion pathway protein K; KEGG: vch:VC2726 general secretion pathway protein K
YP_941578.1	TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: sfr:Sfri_0113 general secretion pathway protein L
YP_941579.1	PFAM: General secretion pathway M protein; KEGG: ppr:PBPRA3472 putative general secretion pathway protein M
YP_941580.1	PFAM: type II secretion system protein N; KEGG: ppr:PBPRA3471 hypothetical general secretion pathway protein N
YP_941581.1	KEGG: pat:Patl_4247 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein
YP_941582.1	PFAM: electron transport protein SCO1/SenC; KEGG: pat:Patl_4237 electron transport protein SCO1/SenC
YP_941583.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vfi:VF2440 Na(+) driven multidrug efflux pump
YP_941584.1	PFAM: GCN5-related N-acetyltransferase; KEGG: syn:slr1340 hypothetical protein
YP_941585.1	PFAM: homoserine O-succinyltransferase; KEGG: vvy:VV1492 homoserine trans-succinylase
YP_941586.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_941587.1	PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: shm:Shewmr7_2687 SNF2-related protein
YP_941588.1	PFAM: ferredoxin; MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: vfi:VFA0264 oxidoreductase (iron-sulfur cluster biosynthesis)
YP_941589.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_941590.1	KEGG: vpa:VP2940 hypothetical protein
YP_941591.1	catalyzes the conversion of NADPH to NADH
YP_941592.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_941593.1	KEGG: cac:CAC1437 diverged AAA-family ATPase containing protein
YP_941594.1	KEGG: psb:Psyr_2649 hypothetical protein
YP_941595.1	KEGG: plu:plu0126 hypothetical protein
YP_941596.1	PFAM: UspA domain protein; KEGG: ppr:PBPRB0088 putative universal stress protein A
YP_941597.1	KEGG: ppr:PBPRB1884 hypothetical protein
YP_941598.1	KEGG: sma:SAV7247 hypothetical protein
YP_941599.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_941600.1	PFAM: PfkB domain protein; KEGG: ppr:PBPRB1882 hypothetical carbohydrate kinase
YP_941601.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_941602.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: ppr:PBPRB1880 putative mannonate oxidoreductase
YP_941603.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB1879 C4-dicarboxylate transport system, putative integral membrane protein
YP_941604.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ppr:PBPRB1878 putative small integral C4-dicarboxylate membrane transport protein
YP_941605.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VPA1702 putative dicarboxylate-binding periplasmic protein
YP_941606.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_941608.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: vpa:VPA1701 putative transcriptional regulatory protein
YP_941609.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: bur:Bcep18194_C6710 beta-glucosidase
YP_941610.1	PFAM: Integrase, catalytic region; KEGG: cbu:CBU_1544 transposase, IS30 family
YP_941611.1	KEGG: rfr:Rfer_4055 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_941613.1	PFAM: type III restriction enzyme, res subunit; KEGG: sfr:Sfri_3418 type III restriction enzyme, res subunit
YP_941614.1	KEGG: ppr:PBPRA1806 hypothetical protein
YP_941615.1	PFAM: helix-turn-helix domain protein; KEGG: vpa:VP1073 putative immunity repressor protein
YP_941616.1	PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM3142 type I restriction-modification system specificity subunit
YP_941617.1	PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like
YP_941618.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pat:Patl_0139 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_941622.1	PFAM: phage integrase family protein; KEGG: bca:BCE0986 Tn554-related, transposase A
YP_941623.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pfo:Pfl_0283 HAD-superfamily hydrolase subfamily IA, variant 3
YP_941624.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: ppr:PBPRA0274 putative penicillin-binding protein 1A
YP_941625.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM
YP_941626.1	PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein
YP_941627.1	PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO
YP_941628.1	PFAM: Pilus assembly protein, PilQ; KEGG: sfr:Sfri_0373 pilus assembly protein, PilQ
YP_941629.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: sdn:Sden_0260 type II and III secretion system protein
YP_941630.1	PFAM: shikimate kinase; KEGG: vfi:VF2292 shikimate kinase I
YP_941631.1	PFAM: 3-dehydroquinate synthase; KEGG: shm:Shewmr7_0248 3-dehydroquinate synthase
YP_941632.1	PFAM: Sporulation domain protein; KEGG: vfi:VF2290 DamX protein
YP_941633.1	KEGG: vfi:VF2289 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase
YP_941634.1	PFAM: ribulose-phosphate 3-epimerase; thiamine monophosphate synthase; KEGG: sfr:Sfri_0381 ribulose-phosphate 3-epimerase
YP_941635.1	KEGG: pat:Patl_0658 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib
YP_941636.1	KEGG: eca:ECA1929 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_941637.1	PFAM: cytochrome c, class I; KEGG: vpa:VP0042 cytochrome c5
YP_941638.1	PFAM: protein of unknown function DUF205; KEGG: ppr:PBPRA0435 hypothetical protein
YP_941639.1	TIGRFAM: dihydroneopterin aldolase; KEGG: vfi:VF2247 dihydroneopterin aldolase
YP_941640.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: pat:Patl_1045 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_941641.1	KEGG: pha:PSHAa2300 undecaprenyl pyrophosphate phosphatase; TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA
YP_941642.1	PFAM: conserved hypothetical protein 245; KEGG: cps:CPS_4093 putative membrane protein
YP_941643.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: sfr:Sfri_2984 metal dependent phosphohydrolase
YP_941644.1	PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: sdn:Sden_2822 peptidoglycan-binding domain 1
YP_941645.1	KEGG: ilo:IL1964 general secretion pathway protein B
YP_941646.1	PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: eca:ECA3587 putative membrane protein
YP_941647.1	PFAM: phosphate transporter; KEGG: pat:Patl_3319 phosphate transporter
YP_941648.1	PFAM: protein of unknown function DUF47; KEGG: sfr:Sfri_0565 protein of unknown function DUF47
YP_941649.1	PFAM: adenylate cyclase; KEGG: vvy:VV0577 hypothetical protein
YP_941650.1	KEGG: cps:CPS_4193 hypothetical protein
YP_941651.1	KEGG: shm:Shewmr7_0857 hypothetical protein
YP_941652.1	PFAM: PspA/IM30 family protein; KEGG: cps:CPS_4191 PspA/IM30 family protein
YP_941653.1	KEGG: shm:Shewmr7_0859 hypothetical protein
YP_941654.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_941655.1	TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: yps:YPTB2490 lipid A biosynthesis lauroyl acyltransferase
YP_941656.1	PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_3770 O-succinylbenzoate-CoA ligase
YP_941657.1	KEGG: ypn:YPN_2119 O-succinylbenzoate-CoA synthase
YP_941658.1	KEGG: ssn:SSO_4233 alanine racemase 1; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_941659.1	KEGG: ecs:ECs5034 replicative DNA helicase DnaB; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase
YP_941660.1	PFAM: diacylglycerol kinase; KEGG: sde:Sde_1725 diacylglycerol kinase
YP_941661.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: she:Shewmr4_3788 glycerol-3-phosphate O-acyltransferase
YP_941662.1	PFAM: Rhodanese domain protein; KEGG: ilo:IL1695 rhodanese-related sulfurtransferase
YP_941663.1	PFAM: protein of unknown function UPF0029; KEGG: plu:plu4400 hypothetical protein
YP_941664.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: vvy:VV0031 Trk-type K+ transport system, membrane component
YP_941665.1	KEGG: yps:YPTB0271 protoporphyrinogen oxidase
YP_941666.1	KEGG: vvy:VV3187 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_941668.1	KEGG: eca:ECA2660 predicted ATP-dependent endonuclease of the OLD family
YP_941669.1	PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: vch:VC1663 heat shock protein HslJ
YP_941670.1	KEGG: shm:Shewmr7_0328 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_941672.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_941673.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_941674.1	KEGG: pha:PSHAa2750 hypothetical protein
YP_941675.1	PFAM: protein of unknown function DUF414; KEGG: eca:ECA0024 hypothetical protein
YP_941676.1	PFAM: cytochrome c, class I; KEGG: vvy:VV0188 cytochrome c4
YP_941677.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_941678.1	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: shm:Shewmr7_3935 oligopeptidase A
YP_941679.1	KEGG: hch:HCH_06467 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_941680.1	PFAM: Na+/H+ antiporter NhaA; KEGG: wsu:WS1251 NA(+)/H(+) antiporter 1
YP_941681.1	PFAM: beta-lactamase domain protein; KEGG: yps:YPTB1433 metallo-beta-lactamase superfamily protein
YP_941682.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_941683.1	KEGG: vch:VCA0615 peptide methionine sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_941684.1	KEGG: hin:HI0268 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_941685.1	KEGG: eci:UTI89_C3803 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein
YP_941687.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sdn:Sden_3396 GGDEF domain
YP_941688.1	PFAM: Na+/H+ antiporter NhaA; KEGG: sdn:Sden_1480 Na+/H+ antiporter NhaA
YP_941689.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA6908 conserved hypothetical protein, predicted short-chain dehydrogenase/reductase SDR family
YP_941690.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: ppr:PBPRA0467 putative xylulose kinase
YP_941691.1	PFAM: SirA family protein; KEGG: ppr:PBPRA0060 SirA protein
YP_941692.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_941693.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_941694.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_941695.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_941696.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_941697.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_941698.1	catalyzes the formation of arginine from (N-L-arginino)succinate and the formation of N-acetylglutamate from glutamate and acetyl-CoA
YP_941699.1	KEGG: shm:Shewmr7_0037 carbonic anhydrase, family 3
YP_941700.1	PFAM: phage integrase family protein; KEGG: son:SO1471 site-specific recombinase, phage integrase family
YP_941704.1	PFAM: protein of unknown function DUF511; KEGG: rso:RSc0886 hypothetical protein
YP_941706.1	KEGG: hch:HCH_04427 hypothetical protein
YP_941707.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cps:CPS_0377 ISCps1, transposase
YP_941708.1	PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator
YP_941709.1	PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV2250 predicted transcriptional regulator
YP_941710.1	KEGG: son:SO0390.1 hypothetical protein
YP_941711.1	KEGG: yps:YPTB1810 putative small subunit bacteriophage terminase
YP_941712.1	PFAM: Resolvase, N-terminal domain; KEGG: gsu:GSU1711 integrative genetic element Gsu5, resolvase
YP_941714.1	PFAM: PKD domain containing protein; Hemolysin-type calcium-binding region; Thrombospondin type 3 repeat; Fibronectin, type III domain protein; KEGG: son:SO4025 OmpA-like transmembrane domain protein
YP_941715.1	PFAM: Phosphoglycerate mutase; KEGG: pub:SAR11_0874 phosphoglycerate mutase family
YP_941718.1	PFAM: GCN5-related N-acetyltransferase; KEGG: aae:aq_567 ribosomal-protein-alanine acetyltransferase
YP_941719.1	KEGG: cps:CPS_3964 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold
YP_941720.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: par:Psyc_0419 hypothetical protein
YP_941721.1	PFAM: FAD dependent oxidoreductase; KEGG: par:Psyc_0420 hypothetical protein
YP_941722.1	PFAM: chalcone and stilbene synthases domain protein; Chalcone and stilbene synthases domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; KEGG: par:Psyc_0421 possible chalcone synthase
YP_941723.1	KEGG: pfa:PF13_0146 hypothetical protein
YP_941724.1	KEGG: lpp:lpp1568 phospholipase
YP_941726.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: sde:Sde_3939 response regulator receiver domain protein (CheY-like)
YP_941727.1	KEGG: pha:PSHAb0027 Peyer's patch-specific virulence factor GipA (transposase)
YP_941728.1	KEGG: sfr:Sfri_1546 hypothetical protein
YP_941729.1	PFAM: Na+/solute symporter; KEGG: sfr:Sfri_1547 Na+/solute symporter
YP_941730.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: shm:Shewmr7_1582 cyclic nucleotide-binding protein
YP_941731.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: she:Shewmr4_1516 exonuclease, RNase T and DNA polymerase III
YP_941732.1	KEGG: pat:Patl_2401 hypothetical protein
YP_941733.1	PFAM: peptidase M14, carboxypeptidase A; KEGG: pcr:Pcryo_1240 peptidase M14, carboxypeptidase A
YP_941734.1	KEGG: vpa:VPA1132 hypothetical protein
YP_941735.1	KEGG: eba:ebA3195 hypothetical protein
YP_941736.1	KEGG: bpm:BURPS1710b_A0492 Tat (twin-arginine translocation) pathway signal sequence domain protein
YP_941737.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: eba:ebA3193 putative oxidoreductase, FAD-binding
YP_941738.1	KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_941739.1	KEGG: pen:PSEEN5015 hypothetical protein
YP_941740.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bpm:BURPS1710b_0135 transcriptional regulator, AraC family
YP_941741.1	PFAM: Ethanolamine ammonia lyase large subunit; KEGG: pat:Patl_1427 ethanolamine ammonia lyase large subunit
YP_941742.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_941743.1	TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: hch:HCH_06322 amino acid transporters
YP_941744.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_941745.1	PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: vvy:VV1959 outer membrane protein
YP_941746.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: shm:Shewmr7_3909 periplasmic sensor signal transduction histidine kinase
YP_941747.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO4647 DNA-binding response regulator
YP_941748.1	KEGG: sfr:Sfri_1133 propeptide, PepSY amd peptidase M4
YP_941749.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: plu:plu2551 selenide, water dikinase (selenophosphate synthase) (selenium donnor protein)
YP_941750.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_941751.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_941752.1	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis
YP_941753.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: yps:YPTB0844 putative sigma 54 modulation protein
YP_941754.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pae:PA1810 putative peptide transport system substrate-binding protein
YP_941755.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1809 putative peptide transport system permease protein
YP_941756.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 putative peptide transport system permease protein
YP_941757.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP_4150 peptide ABC transporter, ATP-binding protein
YP_941758.1	PFAM: Lytic transglycosylase, catalytic; KEGG: ppr:PBPRA0641 hypothetical soluble lytic murein transglycosylase
YP_941759.1	KEGG: tbd:Tbd_1865 pilus assembly protein
YP_941760.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_941761.1	PFAM: extracellular solute-binding protein, family 3; KEGG: vpa:VPA0637 arginine ABC transporter, periplasmic arginine-binding protein
YP_941762.1	oxidizes malate to oxaloacetate
YP_941763.1	TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppr:PBPRA3312 putative siroheme synthase
YP_941764.1	KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase
YP_941765.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain
YP_941766.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: wsu:WS0716 hypothetical protein
YP_941767.1	PFAM: helix-turn-helix domain protein; KEGG: shm:Shewmr7_3944 transcriptional regulator, XRE family
YP_941768.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_941769.1	Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates
YP_941770.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: pat:Patl_3820 alpha amylase, catalytic region
YP_941771.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: wsu:WS1630 response regulator protein-CheY-like and an HD-GYP domain
YP_941772.1	PFAM: glucose sorbosone dehydrogenase; KEGG: xac:XAC3868 dehydrogenase
YP_941774.1	KEGG: sfr:Sfri_4031 membrane protein-like protein
YP_941775.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pat:Patl_1038 RNA polymerase, sigma 70 subunit, RpoD
YP_941776.1	KEGG: vvy:VV0562 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein
YP_941777.1	PFAM: GatB/Yqey domain protein; KEGG: vpa:VP0406 hypothetical protein
YP_941778.1	PFAM: ribosomal protein S21; KEGG: ppr:PBPRA0433 putative ribosomal protein S21
YP_941779.1	KEGG: sfr:Sfri_2992 putative metalloendopeptidase, glycoprotease family protein; TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease
YP_941780.1	KEGG: sec:SC0620 ferric enterobactin (enterochelin) transporter
YP_941781.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_941782.1	PFAM: TatD-related deoxyribonuclease; KEGG: cps:CPS_0167 deoxyribonuclease TatD
YP_941783.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: ppr:PBPRA0121 sec-independent protein translocase protein TatC
YP_941784.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: ppr:PBPRA0120 sec-independent protein translocase protein TatB
YP_941785.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cps:CPS_0163 Sec-independent protein translocase protein TatA
YP_941786.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: vvy:VV0179 putative ubiquinone biosynthesis protein AarF
YP_941787.1	PFAM: protein of unknown function DUF1243; KEGG: vpa:VP0096 conserved hypothetical protein
YP_941788.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vfi:VF0046 ubiquinone/menaquinone biosynthesis methyltransferase UbiE
YP_941789.1	PFAM: phosphoglucose isomerase (PGI); KEGG: vfi:VF0304 glucose-6-phosphate isomerase
YP_941790.1	KEGG: hin:HI1244 hypothetical protein
YP_941791.1	PFAM: glycosyltransferase sugar-binding region containing DXD motif; KEGG: vch:VC0234 hypothetical protein
YP_941792.1	PFAM: glycosyl transferase, family 9; KEGG: vch:VC0223 ADP-heptose--LPS heptosyltransferase II, putative
YP_941793.1	PFAM: glycosyl transferase, family 2; KEGG: vch:VC0224 lipopolysaccharide biosynthesis glycosyltransferase, putative
YP_941794.1	PFAM: glycosyl transferase, family 9; KEGG: vvu:VV10816 ADP-heptose:LPS heptosyltransferase
YP_941795.1	catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position
YP_941796.1	PFAM: glycosyl transferase, family 2; KEGG: vvy:VV0299 putative glycosyl transferase
YP_941797.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: ppr:PBPRA0211 hypothetical KDO transferase
YP_941798.1	PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein
YP_941799.1	TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: pfo:Pfl_0465 lipopolysaccharide heptosyltransferase II
YP_941800.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: vch:VC0240 ADP-L-glycero-D-mannoheptose-6-epimerase
YP_941801.1	PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_0013 glycosyl transferase, group 1
YP_941802.1	PFAM: Rhodanese domain protein; KEGG: ecp:ECP_3510 thiosulfate sulfurtransferase GlpE
YP_941803.1	KEGG: shm:Shewmr7_2737 hypothetical protein
YP_941804.1	KEGG: pha:PSHAa0671 transketolase 1 (TK 1); TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region
YP_941805.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_941806.1	with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain
YP_941807.1	functions to transport ribose at high affinity; forms a complex with RbsA2C2B
YP_941808.1	periplasmic substrate-binding component of the ATP-dependent ribose transport system
YP_941809.1	catalyzes the formation of D-ribose 5-phosphate from ribose
YP_941810.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ppr:PBPRB1561 putative ribose operon repressor, rbsR
YP_941811.1	KEGG: vfi:VF2559 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase
YP_941812.1	PFAM: amino acid-binding ACT domain protein; KEGG: vfi:VF2557 acetolactate synthase small subunit
YP_941813.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_941814.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_941815.1	PFAM: alpha/beta hydrolase fold; KEGG: pmu:PM0055 hypothetical HI0282
YP_941816.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_941817.1	TIGRFAM: isochorismate synthases; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: son:SO4713 menaquinone-specific isochorismate synthase, putative
YP_941818.1	TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: spt:SPA3933 menaquinone biosynthetic protein
YP_941819.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_941820.1	KEGG: cps:CPS_0875 translation elongation factor G
YP_941821.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_941822.1	KEGG: pha:PSHAa0484 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; Phosphomethylpyrimidine kinase type-1
YP_941823.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: plu:plu0484 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate synthesis protein
YP_941824.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: plu:plu0483 thiS protein
YP_941825.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_941826.1	TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: ppr:PBPRA0110 putative ThiH protein
YP_941827.1	KEGG: ppr:PBPRA1236 hypothetical protein
YP_941828.1	PFAM: Lytic transglycosylase, catalytic; KEGG: mca:MCA2008 transglycosylase SLT domain protein
YP_941829.1	PFAM: O-antigen polymerase; KEGG: ppr:PBPRA3291 hypothetical protein
YP_941830.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: vch:VC0394 excinuclease ABC, subunit A
YP_941831.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_941832.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_941833.1	PFAM: protein of unknown function DUF541; KEGG: yps:YPTB3192 hypothetical protein
YP_941834.1	PFAM: S-adenosylmethionine decarboxylase; KEGG: sdn:Sden_2279 adenosylmethionine decarboxylase
YP_941835.1	PFAM: Fe(II) trafficking protein YggX; KEGG: msu:MS0316 hypothetical protein
YP_941836.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; KEGG: son:SO3368 A/G-specific adenine glycosylase
YP_941837.1	KEGG: pat:Patl_0078 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase
YP_941838.1	PFAM: stress protein; protein of unknown function DUF450; KEGG: bur:Bcep18194_B0270 stress protein
YP_941839.1	PFAM: 17 kDa surface antigen; KEGG: pca:Pcar_2748 17 kD surface antigen precursor
YP_941840.1	KEGG: cps:CPS_3092 hypothetical protein
YP_941841.1	PFAM: protein of unknown function DUF74; KEGG: cps:CPS_2458 hypothetical protein
YP_941842.1	KEGG: ppr:PBPRB1752 hypothetical protein
YP_941843.1	KEGG: ana:alr7544 hypothetical protein
YP_941844.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: vpa:VP0093 hypothetical protein
YP_941845.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_941846.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_941847.1	KEGG: vvy:VV0439 thiamine ABC transporter, ATP-binding protein; TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; SMART: AAA ATPase
YP_941848.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_941849.1	PFAM: protein of unknown function UPF0270; KEGG: pha:PSHAa2909 hypothetical protein
YP_941850.1	PFAM: carbonic anhydrase; KEGG: pst:PSPTO_0994 carbonic anhydrase
YP_941851.1	PFAM: cytochrome c, class I; KEGG: vfi:VF1943 cytochrome c-554(548)
YP_941852.1	KEGG: vvy:VV3239 ComM-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_941853.1	TIGRFAM: valyl-tRNA synthetase; KEGG: vch:VC2503 valyl-tRNA synthetase
YP_941854.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: cps:CPS_0739 DNA polymerase III, chi subunit
YP_941855.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_941856.1	PFAM: permease YjgP/YjgQ family protein; KEGG: vch:VC2500 hypothetical protein
YP_941857.1	PFAM: permease YjgP/YjgQ family protein; KEGG: sgl:SG2107 putative transport protein
YP_941858.1	PFAM: RDD domain containing protein; KEGG: ppr:PBPRA0490 hypothetical protein
YP_941859.1	PFAM: phage integrase family protein; KEGG: lpp:lpp2123 hypothetical protein
YP_941862.1	KEGG: sgl:SG0932 hypothetical protein
YP_941864.1	KEGG: mxa:MXAN_1209 virulence-associated protein E domain protein
YP_941865.1	PFAM: phage integrase family protein; KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family
YP_941866.1	KEGG: yps:YPTB1810 putative small subunit bacteriophage terminase
YP_941870.1	PFAM: peptidase domain protein; PGAP1 family protein; KEGG: sfr:Sfri_3642 peptidase domain protein
YP_941871.1	KEGG: sfr:Sfri_3641 hypothetical protein
YP_941872.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1463 polar amino acid transport system ATP-binding protein
YP_941873.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1062 ABC polar amino acid family transporter, inner membrane subunit
YP_941874.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_B1063 ABC polar amino acid family transporter, inner membrane subunit
YP_941875.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bxe:Bxe_B1064 ABC polar amino acid family transporter, periplasmic ligand binding protein
YP_941876.1	PFAM: Endoribonuclease L-PSP; KEGG: bja:blr4467 hypothetical protein
YP_941877.1	PFAM: Amidase; KEGG: mlo:mlr7070 glutamyl-tRNA(Gln) amidotransferase subunit A
YP_941878.1	PFAM: regulatory protein, LysR; KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family
YP_941879.1	KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family
YP_941880.1	KEGG: chu:CHU_2783 hypothetical protein
YP_941882.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sde:Sde_0178 hypothetical protein
YP_941883.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: sde:Sde_0749 response regulator receiver domain protein (CheY-like)
YP_941884.1	KEGG: sde:Sde_0134 hypothetical protein
YP_941885.1	KEGG: hch:HCH_02717 putative polysaccharide biosynthesis protein
YP_941886.1	KEGG: sde:Sde_0133 uncharacterized protein involved in exopolysaccharide biosynthesis-like
YP_941887.1	PFAM: polysaccharide export protein; KEGG: sde:Sde_0132 putative polysaccharide export protein, outer membrane
YP_941888.1	TIGRFAM: histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sde:Sde_0750 sensory transduction histidine kinase
YP_941889.1	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid
YP_941890.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ypn:YPN_0099 UDP-N-acetylglucosamine 2-epimerase
YP_941891.1	KEGG: mxa:MXAN_3233 hypothetical protein
YP_941892.1	PFAM: Heparinase II/III family protein; KEGG: aba:Acid345_3793 heparinase II/III-like
YP_941893.1	TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: net:Neut_0899 eight transmembrane protein EpsH
YP_941894.1	KEGG: rru:Rru_A1484 glycosyl transferase WecB/TagA/CpsF; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF
YP_941895.1	KEGG: sme:SMb21237 putative enzyme, C-terminal domain similar to sulfotransferase protein
YP_941896.1	KEGG: mba:Mbar_B3744 hypothetical protein
YP_941898.1	PFAM: glycosyl transferase, group 1; KEGG: pat:Patl_4007 glycosyl transferase, group 1
YP_941899.1	KEGG: mac:MA1063 capsular polysaccharide biosynthesis protein
YP_941900.1	PFAM: O-antigen polymerase
YP_941901.1	PFAM: acyltransferase 3; KEGG: pat:Patl_1096 acyltransferase 3
YP_941902.1	KEGG: gme:Gmet_3227 hypothetical protein
YP_941904.1	KEGG: cgb:cg1672 polyprenol-phosphate-mannose synthase domain 1
YP_941906.1	PFAM: glycosyl transferase, family 2; KEGG: mca:MCA2193 glycosyl transferase, group 2 family
YP_941907.1	PFAM: FAD dependent oxidoreductase; KEGG: pub:SAR11_0547 D amino acid oxidase (DAO) family
YP_941908.1	PFAM: small multidrug resistance protein; KEGG: dsy:DSY2566 hypothetical protein
YP_941909.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB3239 probable D-tagatose 3-epimerase
YP_941911.1	PFAM: glycosyl transferase, group 1; KEGG: bce:BC1535 glycosyltransferase
YP_941912.1	PFAM: polysaccharide deacetylase; KEGG: mca:MCA0187 hypothetical protein
YP_941913.1	PFAM: glycosyl transferase, group 1; KEGG: son:SO4681 glycosyl transferase, group 1 family protein
YP_941914.1	PFAM: glycosyl transferase, group 1; KEGG: pfu:PF0788 glycosyl transferase
YP_941916.1	KEGG: gme:Gmet_2469 fibronectin, type III
YP_941917.1	PFAM: sugar transferase; KEGG: pha:PSHAa1783 UDP-glucose lipid carrier transferase
YP_941919.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_941920.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_941921.1	TIGRFAM: F0F1-ATPase subunit, putative; KEGG: rfr:Rfer_1163 F0F1-ATPase subunit, putative
YP_941922.1	KEGG: rfr:Rfer_1164 hypothetical protein
YP_941923.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_941924.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_941925.1	PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rfr:Rfer_1167 H+-transporting two-sector ATPase, B/B' subunit
YP_941926.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_941927.1	PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit
YP_941928.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3483 HlyD family secretion protein
YP_941929.1	PFAM: acriflavin resistance protein; KEGG: vfi:VF1581 acriflavin resistance plasma membrane protein
YP_941930.1	PFAM: Citrate transporter; KEGG: shm:Shewmr7_3245 Na+/H+ antiporter
YP_941931.1	PFAM: Fimbrial protein pilin; KEGG: neu:NE1308 fimbrial protein pilin:bacterial general secretion pathway protein H
YP_941932.1	KEGG: shm:Shewmr7_3604 methylation site containing protein
YP_941933.1	KEGG: pat:Patl_3344 prepilin-type cleavage/methylation
YP_941934.1	KEGG: pha:PSHAa0384 prepilin peptidase dependent protein D
YP_941935.1	KEGG: par:Psyc_0240 probable pilus assembly protein major pilin PilA
YP_941936.1	TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: she:Shewmr4_0420 type IV-A pilus assembly ATPase PilB
YP_941937.1	PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein
YP_941938.1	PFAM: EAL domain protein; response regulator receiver; KEGG: nmu:Nmul_A1555 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain)
YP_941939.1	KEGG: neu:NE0049 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_941940.1	KEGG: cps:CPS_2512 hypothetical protein
YP_941942.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: dvu:DVU1638 hypothetical protein
YP_941943.1	PFAM: ROK family protein; KEGG: plu:plu1315 N-acetylglucosamine repressor
YP_941944.1	catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate
YP_941945.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_941946.1	TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: vfi:VF0808 PTS system, N-acetylglucosamine-specific IIB component / PTS system, N-acetylglucosamine-specific IIC component
YP_941947.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_941948.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: psb:Psyr_2906 pilus retraction protein PilT
YP_941949.1	KEGG: vch:VC2233 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_941950.1	PFAM: ribonuclease H; KEGG: stm:STM0263 RNase HI, degrades RNA of DNA-RNA hybrids
YP_941951.1	PFAM: Methyltransferase type 11; KEGG: pha:PSHAa1965 S-adenosyl-L-methionine-dependent methyltransferase
YP_941952.1	PFAM: beta-lactamase domain protein; KEGG: neu:NE0138 metallo-beta-lactamase superfamily
YP_941953.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pha:PSHAa1967 lytic murein transglycosylase C, membrane-bound
YP_941954.1	KEGG: pat:Patl_2143 glycoside hydrolase, family 13-like
YP_941955.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_941956.1	PFAM: NUDIX hydrolase; KEGG: vpa:VP0520 MutT/nudix family protein
YP_941957.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: vpa:VP0521 phosphoenolpyruvate-protein phosphotransferase
YP_941958.1	involved in the import of serine and threonine coupled with the import of sodium
YP_941959.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: vpa:VP0523 prolipoprotein diacylglyceryl transferase
YP_941960.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_941961.1	TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pat:Patl_4206 glutathione-disulfide reductase
YP_941962.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_941963.1	KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_941965.1	KEGG: gsu:GSU2148 hypothetical protein
YP_941966.1	PFAM: PKD domain containing protein; SMART: Integrin alpha beta-propellor repeat protein; KEGG: sat:SYN_00845 hypothetical protein
YP_941967.1	PFAM: luciferase family protein; KEGG: mxa:MXAN_5094 luciferase-like monooxygenase family protein
YP_941968.1	PFAM: metallophosphoesterase; KEGG: dde:Dde_1891 conserved hypothetical integral membrane protein
YP_941969.1	KEGG: pat:Patl_2983 putative heat shock protein 70 family protein
YP_941970.1	KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_941971.1	KEGG: ppr:PBPRB1658 hypothetical alkylhydroperoxidase AhpD domain protein
YP_941972.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_941973.1	PFAM: Pirin domain protein domain protein; KEGG: bca:BCE5184 hypothetical protein
YP_941974.1	KEGG: cps:CPS_1775 putative glutathione S-transferase
YP_941975.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_941976.1	KEGG: ppr:PBPRA1225 putative trehalose-6-phosphate hydrolase; TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_941977.1	PFAM: Polyprenyl synthetase; KEGG: vch:VC0434 octaprenyl-diphosphate synthase
YP_941978.1	PFAM: ribosomal protein L21; KEGG: vvy:VV0470 ribosomal protein L21
YP_941979.1	involved in the peptidyltransferase reaction during translation
YP_941980.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_941981.1	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system
YP_941982.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: ppr:PBPRA3083 putative TrmA family RNA methyltransferase
YP_941983.1	KEGG: sec:SC2896 (p)ppGpp synthetase I (GTP pyrophosphokinase); TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_941984.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0755 apolipoprotein N-acyltransferase
YP_941985.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: sdn:Sden_0812 CBS:transporter associated
YP_941986.1	PFAM: protein of unknown function UPF0054; KEGG: vvy:VV0915 predicted metal-dependent hydrolase
YP_941987.1	PFAM: PhoH family protein; KEGG: sdn:Sden_0814 PhoH-like protein
YP_941988.1	KEGG: son:SO1181 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_941989.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: vpa:VP0735 VisC-related protein
YP_941990.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_941991.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vpa:VP0912 C4-dicarboxylate transport protein
YP_941992.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ
YP_941993.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1096 TRAP-type C4-dicarboxylate transport system, periplasmic component
YP_941994.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_0812 putative transport protein
YP_941995.1	KEGG: vvy:VV0879 hypothetical protein
YP_941996.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: son:SO4555 drug resistance transporter, Bcr/CflA family protein
YP_941997.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_3495 regulatory protein, LysR
YP_941998.1	PFAM: extracellular solute-binding protein, family 5; KEGG: vvy:VVA0132 ABC-type dipeptide transport system, periplasmic component
YP_941999.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0133 peptide ABC transporter, permease protein
YP_942000.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VVA0134 peptide ABC transporter, permease protein
YP_942001.1	KEGG: vvu:VV21294 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_942002.1	KEGG: vvy:VVA0136 ABC-type oligopeptide transport system, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_942003.1	KEGG: vvu:VV21296 hypothetical protein
YP_942004.1	KEGG: bth:BT2954 hypothetical protein
YP_942005.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vvy:VVA0138 transcriptional regulator
YP_942006.1	KEGG: vvy:VVA0142 maltoporin
YP_942007.1	PFAM: glycoside hydrolase, family 16; KEGG: vvy:VVA0140 beta-glucanase
YP_942008.1	PFAM: Carbohydrate-binding, CenC domain protein domain protein; KEGG: cps:CPS_3716 glycosyl hydrolase, family 16
YP_942009.1	KEGG: vvy:VVA0139 hypothetical protein
YP_942010.1	KEGG: nmu:Nmul_A2454 DsbA oxidoreductase
YP_942011.1	PFAM: glycoside hydrolase, family 16; KEGG: sde:Sde_3021 beta-glucanase/beta-glucan synthetase-like
YP_942013.1	KEGG: yps:YPTB3641 maltose operon periplasmic protein
YP_942014.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: ppr:PBPRA0098 putative peptide ABC transporter, ATP-binding protein
YP_942015.1	PFAM: extracellular solute-binding protein, family 5; KEGG: vfi:VF2518 dipeptide-binding protein
YP_942016.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2517 dipeptide transport system permease protein DppB
YP_942017.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2516 dipeptide transport system permease protein DppC
YP_942018.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_942019.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_942020.1	PFAM: pseudouridine synthase; KEGG: ppr:PBPRA0408 putative ribosomal large subunit pseudouridine synthase A
YP_942021.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_942022.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: aci:ACIAD3447 putative transcriptional regulator (GntR family)
YP_942023.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC1273 extracellular solute-binding protein, family 7
YP_942024.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_0678 TRAP dicarboxylate transporter, DctQ subunit, putative
YP_942025.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_0848 TRAP dicarboxylate transporter, DctM subunit, putative
YP_942026.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL2259 ABC-type multidrug transport system, ATPase component
YP_942027.1	PFAM: ABC-2 type transporter; KEGG: vfi:VF2171 ABC transporter permease protein
YP_942028.1	PFAM: putative methyltransferase; KEGG: pha:PSHAa2295 methyltransferase SAM dependent
YP_942029.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_942030.1	PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: ppr:PBPRB0738 hypothetical protein
YP_942031.1	KEGG: abo:ABO_0335 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase
YP_942032.1	KEGG: vvy:VV2764 pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_942033.1	KEGG: sbo:SBO_0123 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_942034.1	KEGG: vfi:VF2168 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_942035.1	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: plu:plu0874 poly(A) polymerase (PAP) (plasmid copy number protein)
YP_942036.1	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: ppr:PBPRA3172 putative glutamyl-tRNA synthetase-relatedprotein
YP_942037.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: vfi:VF2165 DnaK suppressor protein
YP_942038.1	KEGG: tcx:Tcr_0554 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like
YP_942039.1	KEGG: hch:HCH_04968 hypothetical protein
YP_942040.1	PFAM: protein of unknown function UPF0060; KEGG: par:Psyc_0916 hypothetical protein
YP_942041.1	KEGG: son:SO0850 hypothetical protein
YP_942042.1	PFAM: EAL domain protein; SMART: GGDEF domain containing protein; KEGG: psp:PSPPH_3939 diguanylate cyclase, putative
YP_942043.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ppr:PBPRB1063 hypothetical protein
YP_942044.1	KEGG: ppr:PBPRA0234 putative 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase
YP_942045.1	KEGG: vch:VCA0425 hypothetical protein
YP_942046.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dar:Daro_0303 lysine exporter protein (LysE/YggA)
YP_942047.1	KEGG: sdn:Sden_3051 hypothetical protein
YP_942048.1	PFAM: Uncharacterised conserved protein UCP029143; KEGG: vch:VC1576 hypothetical protein
YP_942049.1	KEGG: ppr:PBPRA3167 putative penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_942050.1	PFAM: Fe-S metabolism associated SufE; KEGG: vvu:VV11803 SufE protein probably involved in Fe-S center assembly
YP_942051.1	KEGG: ppr:PBPRA1286 hypothetical protein
YP_942052.1	PFAM: protein of unknown function DUF890; KEGG: dps:DP1289 hypothetical protein
YP_942053.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_942054.1	KEGG: sdn:Sden_1092 ribose 5-phosphate isomerase; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase
YP_942055.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: vch:VC2479 hypothetical protein
YP_942056.1	KEGG: sdn:Sden_1101 hypothetical protein
YP_942057.1	PFAM: protein of unknown function DUF710; KEGG: ilo:IL2100 hypothetical protein
YP_942058.1	TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sdn:Sden_0830 YgfB and YecA
YP_942059.1	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sde:Sde_3513 aminopeptidase P II
YP_942060.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pha:PSHAa0563 2-octaprenyl-6-methoxyphenol hydroxylase
YP_942061.1	KEGG: pat:Patl_3501 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_942062.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: ppr:PBPRA3117 hypothetical protein
YP_942063.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_942064.1	PFAM: regulatory protein, MarR; KEGG: vvy:VV2104 transcriptional regulator
YP_942065.1	PFAM: regulatory protein, MarR; KEGG: vfi:VFA1063 transcriptional regulator, MarR family
YP_942066.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_942067.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VP1727 glycine betaine/L-proline transport system permease
YP_942068.1	KEGG: vpa:VP1726 ABC superfamily (glycine/betaine/proline transport protein); TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase
YP_942069.1	KEGG: pmu:PM0525 KpsF protein, putative; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_942070.1	KEGG: son:SO2064 hypothetical protein
YP_942071.1	KEGG: pha:PSHAa2328 hypothetical protein
YP_942072.1	PFAM: Uncharacterised conserved protein UCP025560; KEGG: abo:ABO_1821 hypothetical protein
YP_942073.1	PFAM: protein of unknown function DUF1145; KEGG: ppr:PBPRA0151 hypothetical protein
YP_942074.1	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: pha:PSHAa0353 enzyme with N-6 adenine-specific DNA methylase domain
YP_942075.1	KEGG: pha:PSHAa0354 cell division transporter substrate-binding protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_942076.1	KEGG: ilo:IL0227 FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase
YP_942077.1	PFAM: protein of unknown function DUF214; KEGG: son:SO4584 cell division ABC transporter, permease protein FtsX
YP_942078.1	TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ilo:IL0229 DNA-directed RNA polymerase sigma 32 subunit
YP_942079.1	PFAM: amino acid-binding ACT domain protein; KEGG: cac:CAC0217 prephenate dehydrotase (pheA)
YP_942080.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_942081.1	KEGG: eca:ECA4237 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase
YP_942082.1	PFAM: NnrS family protein; KEGG: ilo:IL0194 heme/copper membrane protein
YP_942083.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pha:PSHAa2419 hypothetical protein
YP_942084.1	PFAM: HPP family protein+B94; KEGG: tdn:Tmden_1127 HPP
YP_942085.1	PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: ypk:y2527 protease II
YP_942086.1	KEGG: pat:Patl_2784 hypothetical protein
YP_942087.1	KEGG: sde:Sde_3908 transcriptional regulator, MerR family
YP_942088.1	PFAM: cyclic nucleotide-binding; sodium/hydrogen exchanger; KEGG: vvy:VV1429 NhaP-type Na+/H+ and K+/H+ antiporter
YP_942089.1	PFAM: RNP-1 like RNA-binding protein; KEGG: pha:PSHAa0253 hypothetical protein
YP_942090.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_942091.1	KEGG: vfi:VF2088 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B
YP_942092.1	PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: vfi:VF2087 ribonuclease III
YP_942093.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: yps:YPTB2889 putative GTP-binding protein
YP_942094.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: stm:STM2579 gap repair gene
YP_942095.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_942096.1	TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: sde:Sde_1417 putative aminotransferase
YP_942097.1	PFAM: glycerate kinase; KEGG: vvy:VVA1391 glycerate kinase
YP_942098.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vvy:VV1577 TRAP-type C4-dicarboxylate transport system, large permease component
YP_942099.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vvy:VV1578 hypothetical protein
YP_942100.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1580 TRAP-type C4-dicarboxylate transport system, periplasmic component
YP_942101.1	catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA
YP_942102.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_942103.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_942104.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: ecj:JW1385 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
YP_942105.1	TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: ecj:JW5217 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
YP_942106.1	TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ecj:JW1387 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
YP_942107.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ecj:JW1388 enoyl-CoA hydratase-isomerase
YP_942108.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_942109.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pen:PSEEN2793 3-hydroxyacyl-CoA dehydrogenase PhaC
YP_942110.1	TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: ecj:JW1391 predicted thioesterase
YP_942111.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_942112.1	TIGRFAM: phenylacetate-CoA ligase; KEGG: ecj:JW5218 phenylacetyl-CoA ligase
YP_942113.1	PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; KEGG: ecj:JW1394 DNA-binding transcriptional regulator, aryl-CoA responsive
YP_942114.1	KEGG: ecj:JW1395 predicted hexapeptide repeat acetyltransferase
YP_942115.1	PFAM: acriflavin resistance protein; KEGG: son:SO3103 AcrB/AcrD/AcrF family protein
YP_942116.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: son:SO3102 AcrA/AcrE family protein
YP_942117.1	TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: ppr:PBPRA3081 putative MazG protein
YP_942118.1	PFAM: porin, Gram-negative type; KEGG: vpa:VPA0527 outer membrane protein N, non-specific porin
YP_942120.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_942121.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_942123.1	PFAM: Septum formation initiator; KEGG: vpa:VP2560 putative septum formation initiator
YP_942124.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: son:SO3438 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_942125.1	KEGG: vpa:VP2558 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase MeCPs; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_942126.1	PFAM: tRNA pseudouridine synthase D, TruD; KEGG: pat:Patl_3859 pseudouridylate synthase
YP_942127.1	KEGG: son:SO3435 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_942128.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: vpa:VP2554 lipoprotein NlpD
YP_942129.1	TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: vvy:VV2808 DNA-directed RNA polymerase, sigma subunit
YP_942131.1	KEGG: vch:VC0858 type IV pilin, putative
YP_942132.1	KEGG: ppr:PBPRA0701 putative type IV pilus assembly protein PilW
YP_942133.1	KEGG: sde:Sde_1197 hypothetical protein
YP_942134.1	KEGG: son:SO3587 hypothetical protein
YP_942135.1	catalyzes the formation of L-homocysteine from cystathionine
YP_942136.1	KEGG: cps:CPS_4482 Bax domain protein
YP_942137.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_942138.1	PFAM: peptidase M50; KEGG: son:SO0823 hypothetical protein
YP_942139.1	PFAM: protein of unknown function DUF1111; KEGG: hch:HCH_00182 predicted thiol oxidoreductase
YP_942140.1	KEGG: hch:HCH_00183 uncharacterized iron-regulated protein
YP_942141.1	KEGG: ccr:CC0203 hypothetical protein
YP_942142.1	PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: ppr:PBPRB0642 hypothetical outer membrane protein OmpA
YP_942143.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3128 ABC transporter, ATP-binding/permease protein, putative
YP_942144.1	KEGG: pfo:Pfl_0671 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase
YP_942145.1	PFAM: protein of unknown function DUF368; KEGG: hch:HCH_01875 predicted membrane protein
YP_942146.1	PFAM: Citrate transporter; KEGG: vvu:VV21213 Na+/H+ antiporter NhaD
YP_942147.1	PFAM: NUDIX hydrolase; KEGG: vch:VC1302 MutT/nudix family protein
YP_942148.1	TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; KEGG: pha:PSHAa1946 methyltransferase with S-adenosyl-L-methionine-dependent methyltransferase domain
YP_942149.1	TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vvy:VV2290 hypothetical protein
YP_942150.1	TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: son:SO2433 aspartyl-tRNA synthetase
YP_942151.1	PFAM: OmpW family protein; KEGG: son:SO1673 outer membrane protein OmpW, putative
YP_942152.1	KEGG: mja:MJ0754 hypothetical protein
YP_942153.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_942154.1	PFAM: formate/nitrite transporter; KEGG: tdn:Tmden_0716 formate/nitrite transporter
YP_942155.1	PFAM: protein of unknown function RIO1; protein kinase; protein phosphatase 2C domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_0820 protein kinase:protein phosphatase 2C-like
YP_942156.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ppr:PBPRA1951 putative haemagglutinin associated protein
YP_942157.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pat:Patl_1692 transcriptional coactivator/pterin dehydratase
YP_942158.1	PFAM: sodium/hydrogen exchanger; KEGG: sdn:Sden_1732 sodium/hydrogen exchanger
YP_942159.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VP0910 C4-dicarboxylate-binding periplasmic protein
YP_942160.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vpa:VP0911 putative C4-dicarboxylate transport protein DctQ
YP_942161.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vpa:VP0912 C4-dicarboxylate transport protein
YP_942162.1	PFAM: sugar fermentation stimulation protein; KEGG: vpa:VP2499 sugar fermentation stimulation protein
YP_942163.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vvu:VV10026 response regulator
YP_942164.1	KEGG: vpa:VP0914 C4-dicarboxylate transport transcriptional regulatory protein
YP_942165.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP0915 C4-dicarboxylate transport sensor protein
YP_942166.1	KEGG: eca:ECA1027 hypothetical protein
YP_942167.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: pat:Patl_2946 crossover junction endodeoxyribonuclease RuvC
YP_942168.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: ppr:PBPRA3509 putative RarD
YP_942169.1	KEGG: pha:PSHAa1876 Holliday junction DNA helicase motor protein; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1
YP_942170.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_942171.1	PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: son:SO3286 cytochrome bd-I oxidase subunit I
YP_942172.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: son:SO3285 cytochrome bd-I oxidase subunit II
YP_942173.1	TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: pat:Patl_1454 cyd operon protein YbgT
YP_942174.1	TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: ilo:IL1084 predicted thioesterase
YP_942175.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdn:Sden_1391 MotA/TolQ/ExbB proton channel
YP_942176.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein
YP_942177.1	PFAM: TolA family protein; KEGG: son:SO2749 tolA protein
YP_942178.1	PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; KEGG: pat:Patl_2939 TolB-like
YP_942179.1	TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_2938 OmpA/MotB
YP_942180.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: vpa:VP1062 hypothetical protein
YP_942181.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_942182.1	PFAM: protein of unknown function DUF1456; KEGG: dps:DP0662 hypothetical protein
YP_942183.1	KEGG: vfi:VF0929 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_942184.1	TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cps:CPS_2194 electron transport complex, RnfABCDGE type, E subunit
YP_942185.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pat:Patl_2969 electron transport complex, RnfABCDGE type, G subunit
YP_942186.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ppr:PBPRA2563 putative RnfD-related protein
YP_942187.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: vfi:VF0933 electron transport complex protein RnfC
YP_942188.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pha:PSHAa1104 electron transport complex protein RnfB
YP_942189.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: vpa:VP2102 RnfA-related protein
YP_942191.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_942192.1	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions
YP_942193.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: ppr:PBPRA1151 ATP-dependent Clp protease adaptor protein ClpS
YP_942194.1	KEGG: pha:PSHAa1724 ATP-dependent specificity subunit of ClpA-ClpP serine protease; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_942195.1	TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: sgl:SG1103 translation initiation factor IF-1
YP_942196.1	PFAM: BolA family protein; KEGG: vch:VC2296 bolA protein
YP_942197.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_942198.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_942199.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_942200.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: vch:VC2292 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD
YP_942201.1	Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
YP_942202.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_942203.1	PFAM: ApbE family lipoprotein; KEGG: vpa:VP2345 thiamin biosynthesis lipoprotein ApbE
YP_942204.1	PFAM: protein of unknown function DUF539; KEGG: ppr:PBPRA0830 hypothetical protein
YP_942205.1	PFAM: protein of unknown function DUF188; KEGG: son:SO2894 YaiI/YqxD family protein
YP_942206.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pat:Patl_1543 cold-shock DNA-binding domain protein
YP_942207.1	TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: cps:CPS_2837 deoxycytidine triphosphate deaminase
YP_942208.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rso:RS02139 hypothetical protein
YP_001012223.1	PFAM: DNA polymerase, beta domain protein region; KEGG: son:SO1440 hypothetical protein
YP_001012224.1	PFAM: protein of unknown function DUF86; KEGG: son:SO1440 hypothetical protein
YP_001012225.1	PFAM: DNA polymerase, beta domain protein region; KEGG: son:SO1440 hypothetical protein
YP_001012226.1	PFAM: protein of unknown function DUF86; KEGG: son:SO1440 hypothetical protein
YP_942209.1	KEGG: sdn:Sden_0209 hypothetical protein
YP_942210.1	PFAM: polysaccharide export protein; KEGG: vpa:VP0220 OtnA protein
YP_942211.1	PFAM: lipopolysaccharide biosynthesis; KEGG: son:SO3191 chain length determinant protein
YP_942212.1	PFAM: NUDIX hydrolase; KEGG: ecp:ECP_2091 GDP-mannose mannosyl hydrolase
YP_942213.1	KEGG: pat:Patl_1792 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein
YP_942214.1	PFAM: transposase, IS4 family protein; KEGG: ssn:SSO_0260 putative receptor
YP_942215.1	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: stm:STM2083 LPS side chain defect: phosphomannomutase
YP_942216.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cps:CPS_4199 GDP-mannose 4,6-dehydratase
YP_942217.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: yps:YPTB1010 GDP-fucose synthetase
YP_942218.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_942219.1	TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0182 glucose-1-phosphate cytidylyltransferase
YP_942220.1	TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; KEGG: vfi:VF0183 CDP-glucose 4,6-dehydratase
YP_942221.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vfi:VF0184 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase
YP_942222.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ypn:YPN_0978 paratose synthase
YP_942223.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: stt:t0784 CDP-tyvelose-2-epimerase
YP_942224.1	PFAM: polysaccharide biosynthesis protein; KEGG: bfs:BF2598 putative LPS biosynthesis related polysaccharide transporter/flippase
YP_942225.1	PFAM: glycosyl transferase, family 2; KEGG: bfs:BF2599 putative LPS biosynthesis related glycosyltransferase
YP_942228.1	KEGG: bfs:BF1022 putative deacetylase
YP_942229.1	KEGG: lil:LA1656 glycosyl transferase
YP_942230.1	PFAM: transposase, IS4 family protein; KEGG: ssn:SSO_0260 putative receptor
YP_942231.1	KEGG: vvy:VV0348 hypothetical protein
YP_942232.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; KEGG: vfi:VF0191 UDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase
YP_942233.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rbe:RBE_0710 dTDP-4-dehydrorhamnose reductase
YP_942234.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: lic:LIC12139 UDP-N-acetylglucosamine 2-epimerase
YP_942235.1	PFAM: glycosyl transferase, group 1; KEGG: lic:LIC12138 colanic acid biosynthesis glycosyl-transferase
YP_942236.1	PFAM: transposase, IS4 family protein; KEGG: ssn:SSO_0260 putative receptor
YP_942237.1	KEGG: son:SOA0162 ISSod6, transposase
YP_942238.1	TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase, family 4; KEGG: cps:CPS_2091 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
YP_942239.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_942240.1	crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown
YP_942241.1	KEGG: cps:CPS_2143 sulfate adenylate transferase, subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein
YP_942242.1	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: cps:CPS_2144 putative transporter
YP_942243.1	PFAM: adenylylsulfate kinase; KEGG: cps:CPS_2145 adenylylsulfate kinase
YP_942244.1	KEGG: vfi:VF0200 acetyltransferase
YP_942245.1	PFAM: RNP-1 like RNA-binding protein; KEGG: ppr:PBPRB1959 hypothetical protein
YP_942247.1	PFAM: transposase, IS4 family protein; KEGG: ssn:SSO_0260 putative receptor
YP_942248.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_942249.1	PFAM: TatD-related deoxyribonuclease; KEGG: vpa:VP2439 putative hydrolase
YP_942250.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pat:Patl_2213 transcription elongation factor GreA
YP_942251.1	PFAM: protein of unknown function UPF0044; KEGG: pat:Patl_1569 protein of unknown function UPF0044
YP_942252.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: son:SO1196 ribosomal RNA large subunit methyltransferase J
YP_942253.1	KEGG: sdn:Sden_1000 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_942254.1	KEGG: hin:HI1464 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS
YP_942255.1	TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: vpa:VP2461 phosphoglucomutase/phosphomannomutase family protein MrsA
YP_942256.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pat:Patl_1575 preprotein translocase, SecG subunit
YP_942257.1	PFAM: protein of unknown function DUF150; KEGG: vfi:VF0484 hypothetical protein
YP_942258.1	KEGG: sdn:Sden_1006 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA N-terminal domain protein; SMART: KH domain protein
YP_942259.1	TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein, ; Miro domain protein; KEGG: vfi:VF0486 bacterial protein translation initiation factor 2 (IF-2)
YP_942260.1	PFAM: ribosome-binding factor A; KEGG: vfi:VF0487 ribosome-binding factor A
YP_942261.1	KEGG: vpa:VP2454 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein
YP_942262.1	KEGG: son:SO1588 hypothetical protein
YP_942263.1	PFAM: protein of unknown function DUF534; KEGG: bmb:BruAb1_2028 ABC transporter, periplasmic substrate-binding protein, hypothetical
YP_942264.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH03928 putative sugar ABC transporter, permease protein
YP_942265.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc1738 probable ATP-binding ABC transporter protein
YP_942266.1	PFAM: ribosomal protein S15; KEGG: eca:ECA0715 30S ribosomal protein S15
YP_942267.1	KEGG: cps:CPS_2207 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein
YP_942268.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: vch:VC2542 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
YP_942269.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: cps:CPS_0408 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_942270.1	KEGG: cps:CPS_1245 hypothetical protein
YP_942271.1	PFAM: CreA family protein; KEGG: ppr:PBPRB0517 putative CreA protein
YP_942272.1	KEGG: vch:VC0904 hypothetical protein
YP_942273.1	KEGG: cps:CPS_3531 hypothetical protein
YP_942274.1	KEGG: vfi:VF0610 hypothetical protein
YP_942275.1	KEGG: sdn:Sden_1544 hypothetical protein
YP_942276.1	PFAM: protein of unknown function DUF446; KEGG: ilo:IL0850 hypothetical protein
YP_942277.1	KEGG: hch:HCH_00238 hypothetical protein
YP_942278.1	KEGG: gme:Gmet_2694 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_942279.1	KEGG: cps:CPS_2578 hypothetical protein
YP_942280.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vfi:VF1790 ATP-dependent RNA helicase
YP_942281.1	KEGG: neu:NE1157 hypothetical protein
YP_942282.1	PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB2866 putative MFS family 3-phenylpropionic acid transporter
YP_942283.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: vpa:VP2862 FxsA protein
YP_942284.1	KEGG: ppr:PBPRA0377 hypothetical protein
YP_942285.1	PFAM: chaperonin Cpn10; KEGG: cps:CPS_0956 chaperone protein GroES
YP_942286.1	TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: vfi:VF0205 60 kDa chaperonin GROEL
YP_942287.1	KEGG: cps:CPS_3257 monooxygenase family protein
YP_942288.1	KEGG: rso:RSc3188 putative hemagglutinin-related protein
YP_942289.1	KEGG: sma:SAV4164 hypothetical protein
YP_942290.1	PFAM: monooxygenase, FAD-binding; KEGG: cps:CPS_3257 monooxygenase family protein
YP_942291.1	KEGG: pat:Patl_4052 hypothetical protein
YP_942292.1	PFAM: NAD-glutamate dehydrogenase; KEGG: pen:PSEEN1740 NAD-specific glutamate dehydrogenase; arginine inducible
YP_942293.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ppr:PBPRA2993 putative HesA/MoeB/ThiF family protein
YP_942294.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_942295.1	PFAM: Rhodanese domain protein; KEGG: ppr:PBPRB0882 hypothetical rhodanese-related sulfurtransferase
YP_942296.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_942297.1	PFAM: protein of unknown function UPF0153; KEGG: pha:PSHAb0120 hypothetical protein
YP_942298.1	KEGG: vpa:VPA0923 hypothetical protein
YP_942299.1	PFAM: protein of unknown function DUF526; KEGG: ppr:PBPRA0086 hypothetical protein
YP_942300.1	KEGG: sde:Sde_0395 hypothetical protein
YP_942301.1	catalyzes the formation of putrescine from agmatine
YP_942302.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_942303.1	PFAM: protein of unknown function DUF1260; KEGG: vch:VC0424 hypothetical protein
YP_942304.1	KEGG: eca:ECA0346 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase
YP_942305.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_942306.1	TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: msu:MS0910 glutamate-1-semialdehyde aminotransferase
YP_942307.1	Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation
YP_942308.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: vch:VC0627 HesB family protein
YP_942309.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cps:CPS_4621 efflux transporter, RND family, MFP subunit
YP_942310.1	PFAM: acriflavin resistance protein; KEGG: pat:Patl_0619 acriflavin resistance protein
YP_942311.1	PFAM: protein of unknown function UPF0126; KEGG: csa:Csal_0350 protein of unknown function UPF0126
YP_942312.1	PFAM: Rhodanese domain protein; KEGG: cps:CPS_3148 putative phage shock protein E
YP_942313.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_942314.1	PFAM: ferric-uptake regulator; KEGG: vpa:VP0833 ferric uptake regulatory protein
YP_942315.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: son:SO2330 flavodoxin
YP_942316.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: cps:CPS_1577 hypothetical protein
YP_942317.1	KEGG: son:SO2332 hypothetical protein
YP_942318.1	PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: vfi:VF0814 esterase/lipase
YP_942319.1	PFAM: SeqA family protein; KEGG: hin:HI0192 seqA protein homolog
YP_942320.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_942321.1	KEGG: pat:Patl_2197 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35
YP_942322.1	KEGG: son:SO2499 hypothetical protein
YP_942323.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cps:CPS_3215 putative ATP-dependent RNA helicase SrmB
YP_942324.1	PFAM: HipA domain protein; KEGG: vch:VC0815 hypothetical protein
YP_942325.1	PFAM: helix-turn-helix domain protein; KEGG: vvy:VV0797 predicted transcriptional regulator
YP_942327.1	PFAM: Auxin Efflux Carrier; KEGG: son:SO2620 hypothetical protein
YP_942328.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vfi:VF0924 transport protein
YP_942329.1	PFAM: Rhomboid family protein; KEGG: cps:CPS_2148 membrane protein, Rhomboid family
YP_942330.1	PFAM: DTW domain containing protein; KEGG: ppr:PBPRA2629 hypothetical protein
YP_942331.1	PFAM: Class I peptide chain release factor; KEGG: ppr:PBPRB0779 hypothetical protein
YP_942332.1	KEGG: ppr:PBPRB1179 hypothetical protein
YP_942333.1	PFAM: protein of unknown function, Spy-related; KEGG: ddi:DDB0167328 hypothetical protein
YP_942334.1	KEGG: syd:Syncc9605_0815 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_942335.1	KEGG: vch:VC2279 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_942336.1	KEGG: son:SO2010 hypothetical protein
YP_942337.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit
YP_942338.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_942339.1	KEGG: son:SO2804 hypothetical protein
YP_942340.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pat:Patl_1779 DNA internalization-related competence protein ComEC/Rec2
YP_942341.1	KEGG: plu:plu1630 probable transport ATP-binding protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_942342.1	KEGG: vch:VC1877 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_942343.1	PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 hypothetical protein
YP_942344.1	KEGG: vvu:VV12088 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_942345.1	KEGG: sdn:Sden_0701 hypothetical protein
YP_942346.1	KEGG: cps:CPS_4187 putative ATP synthase F0, A subunit
YP_942347.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_942348.1	PFAM: regulatory protein, DeoR; KEGG: eca:ECA1907 DeoR-family transcriptional regulator
YP_942349.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: cps:CPS_3560 GTP-binding protein YchF
YP_942350.1	PFAM: peptidyl-tRNA hydrolase; KEGG: vvy:VV0925 peptidyl-tRNA hydrolase
YP_942351.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: pat:Patl_2569 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
YP_942352.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_942353.1	KEGG: vfi:VF0765 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase
YP_942354.1	PFAM: outer membrane lipoprotein LolB; KEGG: vfi:VF0766 outer-membrane lipoprotein LolB
YP_942355.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: vvu:VV10367 DNA repair protein RecN
YP_942356.1	PFAM: ATP-NAD/AcoX kinase; KEGG: pat:Patl_1715 NAD(+) kinase
YP_942357.1	PFAM: GrpE protein; KEGG: pha:PSHAa1222 HSP 24 DnaK nucleotide exchange factor; probable member of the DnaK/DnaJ/GrpE foldase complex
YP_942358.1	TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: vvy:VV0832 chaperone protein DnaK
YP_942359.1	TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: vpa:VP0654 DnaJ protein
YP_942360.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: sde:Sde_1555 peptidyl-prolyl cis-trans isomerase FklB
YP_942361.1	PFAM: purine and other phosphorylases, family 1; KEGG: ppr:PBPRA0538 putative MTA/SAH nucleosidase
YP_942362.1	KEGG: vfi:VF1727 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein
YP_942364.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_942365.1	sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA
YP_942366.1	PFAM: peptidase S49; KEGG: hch:HCH_02138 periplasmic serine protease (ClpP class)
YP_942367.1	PFAM: peptidase M48, Ste24p; KEGG: ppr:PBPRA2902 hypothetical Zn-dependent protease
YP_942369.1	PFAM: protein of unknown function UPF0118; KEGG: vfi:VF1921 transporter
YP_942370.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pat:Patl_2480 redoxin
YP_942371.1	with UspC and UspD is involved in resistance to UV irradiation
YP_942372.1	Global transcription factor that controls the expression of over 100 target genes in response to anoxia
YP_942373.1	KEGG: ppr:PBPRA1837 hypothetical protein
YP_942374.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: son:SO2358 cytochrome oxidase maturation protein, cbb3-type
YP_942375.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: vvy:VV1676 cation transport ATPase
YP_942376.1	KEGG: vch:VC1438 hypothetical protein
YP_942377.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: ppr:PBPRA1834 putative cytochrome c oxidase, subunit CcoP
YP_942378.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: cps:CPS_1993 cytochrome c oxidase, cbb3-type, CcoQ subunit
YP_942379.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: vfi:VF1300 cytochrome c oxidase, monoheme subunit, membrane-bound
YP_942380.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: vch:VC1442 cytochrome c oxidase, subunit CcoN
YP_942381.1	KEGG: son:SO2365 hypothetical protein
YP_942382.1	PFAM: DoxX family protein; KEGG: ppr:PBPRA3518 putative transmembrane protein
YP_942383.1	KEGG: vpa:VP3016 hypothetical protein
YP_942384.1	PFAM: Allergen V5/Tpx-1 family protein; KEGG: ana:all1882 unknown protein
YP_942385.1	PFAM: protein of unknown function DUF692; KEGG: ppr:PBPRA3516 hypothetical protein
YP_942386.1	KEGG: vvy:VV3193 putative signal peptide protein
YP_942387.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_942388.1	KEGG: ppr:PBPRA0959 hypothetical protein
YP_942389.1	KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_942390.1	KEGG: vvy:VVA0115 hypothetical protein
YP_942391.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: vvy:VVA0116 short chain dehydrogenase
YP_942392.1	PFAM: AMP-dependent synthetase and ligase; KEGG: vvy:VVA0117 long-chain acyl-CoA synthetase
YP_942393.1	KEGG: vvy:VVA0118 thermostable hemolysin
YP_942394.1	PFAM: UspA domain protein; KEGG: ppr:PBPRB0088 putative universal stress protein A
YP_942395.1	PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A
YP_942396.1	molecular chaperone
YP_942397.1	KEGG: sdn:Sden_1430 adenylate kinases; TIGRFAM: adenylate kinases; PFAM: adenylate kinase; adenylate kinase, lid domain protein
YP_942398.1	PFAM: NLP/P60 protein; KEGG: vpa:VP1485 lipoprotein NlpC
YP_942399.1	PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A
YP_942400.1	PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: yps:YPTB1059 hypothetical protein
YP_942401.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_942402.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_942403.1	PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PP-loop domain protein; KEGG: yps:YPTB2430 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_942404.1	KEGG: son:SO1968 hypothetical protein
YP_942405.1	putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_942406.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: vfi:VF2513 cyclic nucleotide binding protein/2 CBS domains
YP_942407.1	3'-5' exonuclease of DNA polymerase III
YP_942408.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: vfi:VF2515 glycine betaine transporter
YP_942409.1	KEGG: deh:cbdb_A1523 hypothetical membrane protein
YP_942410.1	phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least
YP_942411.1	TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, sucrose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: vch:VCA0653 PTS system, sucrose-specific IIBC component
YP_942412.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vch:VCA0654 sucrose operon repressor ScrR, putative
YP_942413.1	KEGG: vch:VCA0655 sucrose-6-phosphate dehydrogenase; TIGRFAM: sucrose-6-phosphate hydrolase; PFAM: Glycosyl hydrolase family 32, N terminal domain protein; Glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32
YP_942415.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_1777 putative molybdenum ABC transporter, ATP-binding protein ModF
YP_942416.1	KEGG: bxe:Bxe_A2422 hypothetical protein
YP_942417.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tte:TTE1717 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_942418.1	PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: wsu:WS0850 sensory transduction histidine kinase
YP_942419.1	KEGG: vvu:VV12436 hypothetical protein
YP_942421.1	PFAM: pseudouridine synthase; KEGG: pat:Patl_2378 pseudouridine synthase, Rsu
YP_942422.1	KEGG: son:SO2629 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type
YP_942423.1	Acts as a repressor of the mtlAD operon
YP_942424.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: vpa:VP0370 PTS system, mannitol-specific IIABC component
YP_942425.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: vpa:VPA0766 hypothetical protein
YP_942426.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: hch:HCH_00065 signal transduction histidine kinase
YP_942427.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: psb:Psyr_2868 response regulator receiver:transcriptional regulatory protein, C-terminal
YP_942428.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pha:PSHAb0174 putative oxidoreductase, NAD(P)-binding domain
YP_942429.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: xcb:XC_3100 hypothetical protein
YP_942430.1	KEGG: ppr:PBPRB0693 hypothetical protein
YP_942431.1	KEGG: pat:Patl_3405 hypothetical protein
YP_942432.1	SMART: peptidase S16, lon domain protein; KEGG: son:SO1987 ATP-dependent protease La (LON) domain protein
YP_942433.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_942434.1	TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: son:SO1985 transcriptional activator, putative
YP_942435.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: son:SO3386 hypothetical protein
YP_942436.1	PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: son:SO3384 deoxyribodipyrimidine photolyase
YP_942437.1	KEGG: vfi:VFA0764 hypothetical transcriptional regulatory protein
YP_942438.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pha:PSHAb0455 hypothetical protein
YP_942439.1	PFAM: amine oxidase; KEGG: vfi:VFA0762 putative dehydrogenase
YP_942440.1	PFAM: protein of unknown function DUF1365; KEGG: vfi:VFA0761 plasmid partition ParA protein
YP_942441.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vfi:VFA0760 cyclopropane-fatty-acyl-phospholipid synthase
YP_942442.1	KEGG: vfi:VFA0759 hypothetical membrane protein
YP_942443.1	KEGG: vfi:VFA0758 hypothetical membrane protein
YP_942444.1	KEGG: son:SO3376 hypothetical protein
YP_942445.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ppr:PBPRA0542 putative glutamate synthase, large subunit
YP_942446.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_942447.1	PFAM: Na+/H+ antiporter NhaC; KEGG: vfi:VF1630 Na(+)/H(+) antiporter
YP_942448.1	KEGG: psb:Psyr_3988 hypothetical protein
YP_942449.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cps:CPS_4136 transporter, LysE family
YP_942450.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_942451.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VFA0015 ABC transporter ATP-binding protein
YP_942452.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ype:YPO2074 long-chain-fatty-acid-CoA ligase
YP_942453.1	PFAM: protein of unknown function DUF1458; KEGG: cps:CPS_0923 hypothetical protein
YP_942454.1	PFAM: Smr protein/MutS2; KEGG: vvy:VV2436 hypothetical protein
YP_942455.1	involved in methylation of ribosomal protein L3
YP_942456.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_942457.1	PFAM: AsmA family protein; KEGG: son:SO2566 AsmA protein
YP_942458.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cps:CPS_1308 endonuclease/exonuclease/phosphatase family protein
YP_942459.1	PFAM: protein kinase; SMART: tyrosine protein kinase; protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: ppr:PBPRA2520 hypothetical protein
YP_942460.1	TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2521 hypothetical nitrate transporter
YP_942461.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: ppr:PBPRA2522 putative nitrite reductase NADPH
YP_942462.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppr:PBPRA2523 putative NAD(P)H-nitrite reductase, large subunit
YP_942463.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ppr:PBPRA2524 putative uroporphyrin-III C-methyltransferase
YP_942464.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ppr:PBPRA2525 hypothetical nitrate reductase large subunit
YP_942465.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_942466.1	KEGG: pha:PSHAa1583 peptide methionine sulfoxide reductase MsrA 2 (protein-methionine-S-oxide reductase 2) (peptide Met(O) reductase 2); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_942467.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_942468.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_942469.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_942470.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_942471.1	TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: ppr:PBPRA2169 putative histidine utilization repressor
YP_942472.1	PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; KEGG: vfi:VF1457 thermostable carboxypeptidase 1
YP_942473.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ppr:PBPRA0062 putative zinc-binding alcohol dehydrogenase
YP_942474.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vfi:VF0021 transcriptional regulators, LysR family
YP_942475.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sde:Sde_3731 protease DO
YP_942476.1	KEGG: neu:NE1156 bacterial regulatory proteins, MerR family
YP_942477.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mca:MCA1727 curved DNA-binding protein
YP_942478.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: gka:GK0078 ATP-dependent Clp protease ATPase subunit
YP_942479.1	PFAM: YceI family protein; KEGG: vpa:VPA0850 hypothetical protein
YP_942480.1	PFAM: cytochrome B561; KEGG: vvy:VVA0735 cytochrome b561
YP_942481.1	PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: vfi:VF1731 stringent starvation protein A
YP_942482.1	KEGG: pha:PSHAa0504 hypothetical protein
YP_942483.1	PFAM: dihydrofolate reductase region; KEGG: ilo:IL0478 dihydrofolate reductase
YP_942484.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_942485.1	KEGG: pmu:PM1209 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase
YP_942486.1	KEGG: eca:ECA3858 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_942487.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sdn:Sden_2886 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_942488.1	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: son:SO3636 organic solvent tolerance protein
YP_942489.1	PFAM: heat shock protein DnaJ domain protein; KEGG: ppr:PBPRA0406 putative DnaJ-related protein
YP_942490.1	KEGG: vpa:VP2380 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
YP_942491.1	PFAM: YCII-related; KEGG: pat:Patl_2835 YCII-related
YP_942492.1	TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: yps:YPTB2119 putative intracellular septation protein
YP_942493.1	KEGG: vvy:VV1216 tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain
YP_942494.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_942495.1	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_942496.1	KEGG: vch:VC1172 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3
YP_942497.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: eca:ECA2297 anthranilate synthase component II
YP_942498.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_942499.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: yps:YPTB2133 hypothetical protein
YP_942500.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: vch:VC1178 hypothetical protein
YP_942501.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cps:CPS_3519 ribosomal large subunit pseudouridine synthase B
YP_942502.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vch:VC0395 UTP--glucose-1-phosphate uridylyltransferase
YP_942503.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_942504.1	PFAM: LrgA family protein; KEGG: pmu:PM0880 holin-like protein
YP_942505.1	PFAM: LrgB family protein; KEGG: eca:ECA2829 puatative membrane protein
YP_942506.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: ppr:PBPRA2911 putative phosphoribosylglycinamide formyltransferase 2
YP_942507.1	KEGG: pha:PSHAa1947 phosphoribosylaminoimidazole synthetase (AIR synthetase); TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_942508.1	KEGG: ppr:PBPRA2906 hypothetical protein
YP_942509.1	PFAM: Chromosomal replication initiator, DnaA; KEGG: sdy:SDY_2685 putative DNA replication factor
YP_942510.1	KEGG: cps:CPS_3192 hypothetical protein
YP_942511.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pha:PSHAa1133 arsenate reductase
YP_942512.1	PFAM: protein of unknown function UPF0153; KEGG: sdn:Sden_1632 uncharacterised conserved protein UCP006173
YP_942513.1	TIGRFAM: lytic murein transglycosylase; KEGG: ilo:IL1824 membrane-bound lytic murein transglycosylase
YP_942514.1	PFAM: protein of unknown function DUF709; KEGG: sdn:Sden_1630 protein of unknown function DUF709
YP_942515.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: buc:BU327 cell division inhibitor minC
YP_942516.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pha:PSHAb0506 cell division inhibitor, membrane ATPase, activates MinC
YP_942517.1	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: pha:PSHAb0505 cell division topological specificity factor
YP_942518.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: tcx:Tcr_0921 peptidylprolyl isomerase
YP_942519.1	PFAM: Uncharacterized lipoprotein; KEGG: cps:CPS_0710 putative lipoprotein
YP_942520.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_942521.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sgl:SG1054 hypothetical protein
YP_942522.1	PFAM: protein of unknown function DUF177; KEGG: ppr:PBPRA1190 conserved hypothetical protein
YP_942523.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: pat:Patl_2126 ribosomal protein L32
YP_942524.1	TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: son:SO2779 fatty acid/phospholipid synthesis protein PlsX
YP_942525.1	KEGG: ssn:SSO_1111 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_942526.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: ppr:PBPRA1194 putative malonyl Coa-acyl carrier protein transacylase
YP_942527.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: vpa:VP2054 3-oxoacyl-(acyl-carrier-protein) reductase
YP_942528.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: vvy:VV1276 acyl carrier protein
YP_942529.1	PFAM: beta-ketoacyl synthase; KEGG: stm:STM1197 3-oxoacyl-[acyl-carrier-protein] synthase II
YP_942530.1	PFAM: aminotransferase, class IV; KEGG: pat:Patl_2119 aminotransferase, class IV
YP_942531.1	PFAM: aminodeoxychorismate lyase; KEGG: vpa:VP2050 hypothetical protein
YP_942532.1	PFAM: thymidylate kinase; KEGG: plu:plu2828 thymidylate kinase
YP_942533.1	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: sdy:SDY_2051 DNA polymerase III, delta prime subunit
YP_942534.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: ppr:PBPRA1202 putative deoxyribonuclease
YP_942535.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pat:Patl_3733 cold-shock DNA-binding domain protein
YP_942536.1	KEGG: cps:CPS_3322 hypothetical protein
YP_942537.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: pha:PSHAa1116 regulator protein
YP_942538.1	PFAM: Radical SAM domain protein; KEGG: vfi:VFA0495 queuosine biosynthesis protein QueE
YP_942539.1	KEGG: ecj:JW5905 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like
YP_942540.1	TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: ssn:SSO_1947 formyltetrahydrofolate deformylase; for PurT-dependent FGAR synthesis
YP_942541.1	PFAM: SEC-C motif domain protein; KEGG: vpa:VP1145 hypothetical protein
YP_942542.1	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP
YP_942543.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: son:SO0695 glutathione-regulated potassium-efflux system protein KefC, putative
YP_942544.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: ecc:c1269 hypothetical protein
YP_942545.1	PFAM: ferredoxin; KEGG: vvy:VV1242 ferredoxin
YP_942546.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_942547.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pmu:PM1325 D-allose binding periplasmic protein
YP_942548.1	KEGG: tel:tll0627 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_942549.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_942550.1	KEGG: sdn:Sden_1949 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12
YP_942551.1	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: pha:PSHAa1421 DNA gyrase, subunit A, type II topoisomerase
YP_942552.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_942553.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_942554.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: vfi:VF1761 3-phosphoshikimate 1-carboxyvinyltransferase
YP_942557.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa0644 two-component response regulator with GGDEF domain
YP_942558.1	functions in MreBCD complex in some organisms
YP_942559.1	TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: ppr:PBPRA3269 putative rod shape-determining protein MreC
YP_942560.1	PFAM: Rod shape-determining protein MreD; KEGG: cps:CPS_4558 rod shape-determining protein MreD
YP_942561.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sdy:SDY_3423 hypothetical protein
YP_942562.1	involved in the processing of the 5'end of 16S rRNA
YP_942563.1	KEGG: ppr:PBPRA3265 hypothetical membrane protein
YP_942564.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: vfi:VF0378 beta-ureidopropionase
YP_942565.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: vch:VC0422 TldD protein
YP_942566.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: tcx:Tcr_1076 channel protein, hemolysin III family
YP_942567.1	PFAM: protein of unknown function DUF615; KEGG: hdu:HD1362 hypothetical protein
YP_942568.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: yps:YPTB3541 putative modulator of DNA gyrase
YP_942569.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: vvu:VV10280 rare lipoprotein A
YP_942570.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cps:CPS_1714 rod shape-determining protein RodA
YP_942571.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: ppr:PBPRA2890 putative penicillin-binding protein 2
YP_942572.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_942573.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: son:SO1170 iojap domain protein
YP_942574.1	TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: pat:Patl_3528 MraZ protein
YP_942575.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: eca:ECA3823 S-adenosyl-methyltransferase
YP_942576.1	PFAM: cell division protein FtsL; KEGG: son:SO4226 cell division protein FtsL
YP_942577.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: sdn:Sden_0349 peptidoglycan glycosyltransferase
YP_942578.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: msu:MS1672 UDP-N-acetylmuramyl tripeptide synthase
YP_942579.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pat:Patl_3523 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_942580.1	KEGG: pha:PSHAa2507 phospho-N-acetylmuramoyl-pentapeptide transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4
YP_942581.1	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: ppr:PBPRA3217 putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
YP_942582.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: vch:VC2402 cell division protein FtsW
YP_942583.1	KEGG: son:SO4219 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain
YP_942584.1	TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: vpa:VP0461 UDP-N-acetylmuramate-alanine ligase
YP_942585.1	KEGG: pat:Patl_3517 D-alanine--D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase domain protein
YP_942586.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: ppr:PBPRA3213 hypothetical cell division protein FtsQ
YP_942587.1	PFAM: cell division protein FtsA; KEGG: eca:ECA3811 cell division protein
YP_942588.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: cps:CPS_4459 cell division protein FtsZ
YP_942589.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_942590.1	KEGG: ppr:PBPRA3209 hypothetical protein
YP_942591.1	TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: son:SO4211 preprotein translocase, SecA subunit
YP_942592.1	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: sdn:Sden_3395 mutator MutT protein
YP_942593.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_942594.1	KEGG: sdn:Sden_3387 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_942595.1	KEGG: cps:CPS_4450 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_942596.1	PFAM: protein of unknown function DUF1342; KEGG: vfi:VF2190 hypothetical protein
YP_942597.1	PFAM: protein of unknown function DUF329; KEGG: ppr:PBPRA3206 zinc-binding protein
YP_942598.1	PFAM: translation initiation factor SUI1; KEGG: sdn:Sden_2675 translation initiation factor SUI1
YP_942599.1	PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family
YP_942600.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_942601.1	KEGG: ppr:PBPRA0761 hypothetical fimbrial biogenesis and twitching motility protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_942602.1	KEGG: sbo:SBO_2540 hypothetical protein
YP_942603.1	KEGG: cps:CPS_4252 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein
YP_942604.1	KEGG: son:SO3311 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein
YP_942605.1	KEGG: vpa:VP0610 hypothetical protein
YP_942606.1	PFAM: Pyrrolo-quinoline quinone; KEGG: vch:VC0762 hypothetical protein
YP_942607.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_942608.1	KEGG: vpa:VP0614 hypothetical protein
YP_942609.1	PFAM: transport-associated; KEGG: pha:PSHAa2525 hypothetical protein
YP_942610.1	TIGRFAM: phosphoheptose isomerase; KEGG: plu:plu4004 hypothetical protein
YP_942611.1	PFAM: protein of unknown function UPF0102; KEGG: pfo:Pfl_4685 protein of unknown function UPF0102
YP_942612.1	PFAM: LppC family lipoprotein; KEGG: ppr:PBPRA3227 hypothetical lipoprotein
YP_942613.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: vpa:VP0450 hypothetical protein
YP_942614.1	KEGG: bth:BT2869 putative succinyltransferase involved in succinoglycan biosynthesis
YP_942615.1	PFAM: Resolvase, N-terminal domain; KEGG: gme:Gmet_3142 resolvase-like
YP_942616.1	PFAM: transposase IS3/IS911 family protein; KEGG: lpf:lpl1584 hypothetical protein
YP_942617.1	PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein
YP_942618.1	PFAM: protein of unknown function DUF1555; KEGG: cps:CPS_1790 hypothetical protein
YP_942619.1	KEGG: plt:Plut_0869 hypothetical protein
YP_942621.1	KEGG: cps:CPS_1718 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_942622.1	KEGG: vfi:VF0751 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta
YP_942623.1	PFAM: Rare lipoprotein B; KEGG: cps:CPS_1721 rare lipoprotein B
YP_942624.1	TIGRFAM: leucyl-tRNA synthetase; KEGG: vpa:VP0727 leucyl-tRNA synthetase
YP_942625.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: vvy:VV1233 response regulator
YP_942626.1	KEGG: ppr:PBPRA2237 putative excinuclease ABC, subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding, class 1
YP_942627.1	KEGG: vpa:VP1943 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_942628.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_4662 negative response regulator of genes in aerobic pathways
YP_942629.1	PFAM: Transglycosylase-associated protein; KEGG: gme:Gmet_1208 transglycosylase-associated protein
YP_942630.1	PFAM: GGDEF domain containing protein; KEGG: mag:amb3617 hypothetical protein YddU
YP_942631.1	KEGG: son:SO1500 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; 5TM Receptors of the LytS-YhcK type, transmembrane region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_942632.1	KEGG: vvy:VVA0239 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_942633.1	KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_942634.1	KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_942635.1	KEGG: tdn:Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; domain of unknown function DUF1745; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_942636.1	KEGG: dar:Daro_2825 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_942637.1	PFAM: protein of unknown function DUF523; KEGG: dps:DP2318 hypothetical protein
YP_942638.1	PFAM: hydrogenase formation HypD protein; KEGG: gme:Gmet_0117 hydrogenase formation HypD protein
YP_942639.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rme:Rmet_1541 formyl transferase-like protein
YP_942640.1	PFAM: formyl transferase domain protein; KEGG: aae:aq_1156 hydrogenase regulation HoxX
YP_942641.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cte:CT1792 hydrogenase expression/formation protein HypE
YP_942642.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sma:SAV7376 putative hydrogenase expression/formation protein
YP_942643.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rfr:Rfer_4096 hydrogenase accessory protein HypB
YP_942644.1	TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: rme:Rmet_1535 hydrogenase nickel insertion protein HypA
YP_942645.1	KEGG: mca:MCA0113 HoxW protein
YP_942646.1	PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mca:MCA0114 NAD-reducing hydrogenase, beta subunit
YP_942647.1	PFAM: ferredoxin; NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mca:MCA2725 NAD-reducing hydrogenase, gamma subunit
YP_942648.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2724 NAD-reducing hydrogenase, alpha subunit
YP_942649.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: syn:sll0322 putative hydrogenase expression/formation protein HypF
YP_942650.1	PFAM: protein of unknown function DUF1538; KEGG: vvy:VV0991 hypothetical protein
YP_942651.1	PFAM: protein of unknown function DUF1538; KEGG: vpa:VP0812 hypothetical protein
YP_942652.1	KEGG: vpa:VP0813 putative nitrogen regulatory protein P-II family protein
YP_942653.1	PFAM: CBS domain containing protein; KEGG: vvy:VV0994 hypothetical protein
YP_942654.1	KEGG: ppr:PBPRA0869 hypothetical protein
YP_942655.1	KEGG: pol:Bpro_0409 hypothetical protein
YP_942656.1	PFAM: cytochrome B561; KEGG: vvu:VV20890 cytochrome b
YP_942657.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VP1734 DNA-binding response regulator
YP_942658.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP1735 putative two-component sensor
YP_942659.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: hch:HCH_05375 permease of the drug/metabolite transporter (DMT) superfamily
YP_942660.1	KEGG: hch:HCH_03651 hypothetical protein
YP_942661.1	KEGG: hch:HCH_03650 molecular chaperone
YP_942662.1	KEGG: hch:HCH_03649 molecular chaperone
YP_942663.1	PFAM: UspA domain protein; KEGG: vvy:VV0075 universal stress protein UspA
YP_942664.1	catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction
YP_942665.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: vfi:VF0982 transporter, drug/metabolite exporter family
YP_942666.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dps:DP2113 hypothetical protein
YP_942667.1	KEGG: sme:SMc00991 putative putrescine-binding periplasmic protein
YP_942668.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: pat:Patl_2665 diguanylate cyclase/phosphodiesterase
YP_942669.1	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: cps:CPS_3372 putative transporter
YP_942671.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sdn:Sden_3478 (acyl-carrier protein) phosphodiesterase
YP_942672.1	PFAM: protein of unknown function DUF336; KEGG: ppr:PBPRB1633 hypothetical protein
YP_942673.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: vvy:VVA1350 predicted dehydrogenase
YP_942674.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: bba:Bd1513 regulator protein PilR
YP_942675.1	KEGG: mxa:MXAN_2774 heat shock protein, HSP20 family
YP_942676.1	KEGG: mxa:MXAN_2773 ATPase, AAA family; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_942677.1	PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mxa:MXAN_2772 gas vesicle protein, GvpL/GvpF family
YP_942678.1	PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mxa:MXAN_2771 gas vesicle protein, GvpL/GvpF family
YP_942679.1	KEGG: mxa:MXAN_6865 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_942680.1	PFAM: response regulator receiver; KEGG: det:DET1294 DNA-binding response regulator
YP_942681.1	involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins
YP_942682.1	KEGG: tcr:504239.220 mucin-associated surface protein (MASP) Pfam: Vicilin_N PROSITE: ALA_RICH CHEMOTAXIS_TRANSDUC_2
YP_942683.1	KEGG: cya:CYA_0826 gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_942686.1	PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mxa:MXAN_2769 gas vesicle protein, GvpL/GvpF family
YP_942687.1	KEGG: pfa:PF14_0480 hypothetical protein
YP_942688.1	PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein
YP_942689.1	PFAM: Gas vesicle K; KEGG: mxa:MXAN_2766 putative gas vesicle protein GvpK
YP_942690.1	PFAM: gas vesicle protein GVPa; KEGG: mxa:MXAN_2765 gas vesicle protein, GvpA family
YP_942691.1	KEGG: mba:Mbar_A0341 hypothetical protein
YP_942692.1	PFAM: stress protein; KEGG: sco:SCO0641 tellurium resistance protein
YP_942693.1	PFAM: stress protein; KEGG: aci:ACIAD1952 tellurium resistance protein
YP_942694.1	PFAM: stress protein; KEGG: ecs:ECs1355 putative tellurium resistance protein TerD
YP_942695.1	PFAM: sodium/calcium exchanger membrane region; KEGG: rba:RB8016 probable sodium/calcium exchanger antiporter
YP_942696.1	KEGG: noc:Noc_1003 hypothetical protein
YP_942697.1	PFAM: sucrose-6F-phosphate phosphohydrolase; KEGG: noc:Noc_1004 hypothetical protein
YP_942698.1	KEGG: noc:Noc_1005 hypothetical protein
YP_942699.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: cac:CAC2227 phosphoserine phosphatase family enzyme
YP_942700.1	PFAM: Tellurite resistance TerB; KEGG: rha:RHA1_ro01775 tellurium resistance protein
YP_942701.1	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_942702.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_942703.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_942704.1	KEGG: yps:YPTB0975 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase
YP_942707.1	stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit
YP_942708.1	KEGG: pmu:PM0064 hypothetical HI0017
YP_942709.1	TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: vfi:VF2113 uracil-DNA glycosylase
YP_942710.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: vpa:VP0501 hypothetical protein
YP_942711.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: sdn:Sden_2673 Holliday junction resolvase YqgF
YP_942712.1	PFAM: protein of unknown function DUF179; KEGG: vch:VC0467 putative transcriptional regulator
YP_942713.1	KEGG: sdn:Sden_2975 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp
YP_942714.1	PFAM: protein of unknown function DUF558; KEGG: vfi:VF0436 hypothetical protein
YP_942715.1	KEGG: cps:CPS_0276 hypothetical protein
YP_942716.1	PFAM: protein of unknown function DUF1212; KEGG: ppr:PBPRA0398 hypothetical protein
YP_942717.1	KEGG: vvy:VV0474 hypothetical protein
YP_942718.1	PFAM: SEC-C motif domain protein; KEGG: ppr:PBPRA1441 hypothetical protein
YP_942719.1	PFAM: protein of unknown function DUF1244; KEGG: cps:CPS_2137 hypothetical protein
YP_942720.1	KEGG: pha:PSHAb0262 putative orphan protein
YP_942721.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppr:PBPRA1539 putative ATP-dependent helicase
YP_942722.1	KEGG: pat:Patl_2932 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase
YP_942723.1	PFAM: basic membrane lipoprotein; KEGG: hch:HCH_02309 uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
YP_942724.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH00188 probable sugar ABC transporter, ATP-binding protein
YP_942725.1	PFAM: inner-membrane translocator; KEGG: hch:HCH_02311 ABC-type uncharacterized transport system, permease component
YP_942726.1	PFAM: inner-membrane translocator; KEGG: mes:Meso_3654 inner-membrane translocator
YP_942727.1	PFAM: peptidase U32; KEGG: ppr:PBPRA1758 putative collagenase family protease
YP_942728.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_942729.1	PFAM: SMC domain protein; KEGG: yps:YPTB0915 putative ATP-dependent dsDNA exonuclease
YP_942730.1	KEGG: xac:XAC3767 hypothetical protein
YP_942731.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_A3335 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains)
YP_942732.1	KEGG: lic:LIC10483 hypothetical protein
YP_942733.1	KEGG: mxa:MXAN_3756 hypothetical protein
YP_942734.1	KEGG: vpa:VP2016 hypothetical protein
YP_942735.1	KEGG: vpa:VP2015 putative cytochrome c
YP_942736.1	KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein
YP_942737.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; KEGG: mag:amb3451 response regulator containing a CheY-like receiver domain and a GGDEF domain
YP_942738.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein
YP_942739.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ppr:PBPRA1185 putative sulfate permease family protein
YP_942740.1	KEGG: ppr:PBPRA0234 putative 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase
YP_942741.1	TIGRFAM: yecA family protein
YP_942742.1	TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; PFAM: pseudouridine synthase; KEGG: vfi:VF1020 tRNA pseudouridine synthase A
YP_942743.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pat:Patl_2648 exodeoxyribonuclease III
YP_942744.1	KEGG: pha:PSHAb0336 hypothetical protein
YP_942745.1	PFAM: inositol monophosphatase; KEGG: sbo:SBO_2557 SuhB
YP_942746.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0615 RRNA methylase, SpoU family
YP_942747.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: vfi:VF0616 Rrf2 family protein
YP_942748.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdy:SDY_2726 putative aminotransferase
YP_942749.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: son:SO2265 NifU family protein
YP_942750.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: eca:ECA3235 iron-sulfur cluster assembly protein
YP_942751.1	TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: yps:YPTB2856 chaperone protein HscB
YP_942752.1	TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; KEGG: ece:Z3793 heat shock protein, chaperone, member of Hsp70 protein family
YP_942753.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: ppr:PBPRA0755 putative ferredoxin
YP_942754.1	PFAM: protein of unknown function DUF528; KEGG: sdn:Sden_0277 protein of unknown function DUF528
YP_942755.1	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide
YP_942756.1	PFAM: ROK family protein; KEGG: vch:VC0270 ROK family protein
YP_942757.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: vvy:VV1593 putative threonine efflux protein
YP_942758.1	PFAM: Patatin; KEGG: cps:CPS_3628 patatin-like phospholipase family protein
YP_942759.1	TIGRFAM: phosphoheptose isomerase; KEGG: vch:VC2230 phosphoheptose isomerase
YP_942760.1	PFAM: glutamine amidotransferase, class-II; KEGG: vfi:VF1930 glutamine amidotransferases class-II
YP_942761.1	KEGG: tcx:Tcr_1705 heat
YP_942762.1	PFAM: sodium:dicarboxylate symporter; KEGG: ppr:PBPRA1167 putative proton/glutamate symporter
YP_942763.1	PFAM: regulatory protein, MerR; KEGG: psb:Psyr_0653 regulatory protein, MerR
YP_942764.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_3524 heavy metal translocating P-type ATPase
YP_942766.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_942767.1	KEGG: ppr:PBPRB1782 putative transposase
YP_942768.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_942769.1	KEGG: abo:ABO_1375 hypothetical protein
YP_942770.1	KEGG: sdn:Sden_3558 hypothetical protein
YP_942771.1	KEGG: cps:CPS_4862 hypothetical protein
YP_942773.1	PFAM: peptidase M56, BlaR1; KEGG: noc:Noc_0291 hypothetical protein
YP_942774.1	PFAM: Penicillinase repressor; KEGG: noc:Noc_0290 penicillinase repressor
YP_942775.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: mfa:Mfla_0577 Na+/H+ antiporter subunit
YP_942776.1	PFAM: multiple resistance and pH regulation protein F; KEGG: cps:CPS_3814 monovalent cation/proton antiporter, MnhF/PhaF family subunit
YP_942777.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_942778.1	KEGG: hch:HCH_00801 multisubunit Na+/H+ antiporter, MnhE subunit
YP_942779.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_942780.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_942781.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_942782.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_942783.1	KEGG: ppr:PBPRB1782 putative transposase
YP_942784.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pae:PA4803 hypothetical protein
YP_942785.1	KEGG: pca:Pcar_1353 hypothetical protein
YP_942786.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sit:TM1040_3171 K+-dependent Na+/Ca+ exchanger related-protein
YP_942787.1	KEGG: sde:Sde_0566 hypothetical protein
YP_942788.1	KEGG: vfi:VFA0443 copper/silver resistance outer membrane protein
YP_942789.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ppr:PBPRA1004 putative cation efflux system transmembrane protein
YP_942790.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ppr:PBPRA1003 putative cation efflux system transmembrane protein
YP_942791.1	KEGG: copA; copper resistance protein A
YP_942792.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRA2177 hypothetical protein
YP_942793.1	KEGG: ppr:PBPRA2177 hypothetical protein
YP_942794.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppr:PBPRA2178 hypothetical DNA-binding response regulator OmpR
YP_942795.1	PFAM: protein of unknown function, Spy-related; KEGG: vpa:VP2857 putative periplasmic protein CpxP
YP_942796.1	KEGG: vpa:VPA1614 putative membrane protein, suppressor for copper-sensitivity A
YP_942797.1	PFAM: Redoxin domain protein; KEGG: ppr:PBPRB1492 hypothetical thioredoxin
YP_942798.1	PFAM: DSBA oxidoreductase; KEGG: ppr:PBPRA2149 hypothetical outer membrane protein
YP_942799.1	KEGG: cps:CPS_0522 hypothetical protein
YP_942800.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ilo:IL1218 cation transport ATPase
YP_942801.1	KEGG: pat:Patl_2092 hypothetical protein
YP_942802.1	KEGG: sde:Sde_1936 hypothetical protein
YP_942803.1	KEGG: sde:Sde_1940 hypothetical protein
YP_942804.1	PFAM: regulatory protein, MerR; KEGG: pfl:PFL_0709 Cu(I)-responsive transcriptional regulator
YP_942805.1	PFAM: cytochrome c, class I; KEGG: sit:TM1040_1744 cytochrome c, class I
YP_942806.1	PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like)
YP_942807.1	PFAM: copper resistance D domain protein; KEGG: sdn:Sden_3543 copper resistance D
YP_942808.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sal:Sala_3099 multiple antibiotic resistance (MarC)-related proteins
YP_942809.1	PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein
YP_942810.1	TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: vch:VCA0291 site-specific recombinase IntI4
YP_942812.1	KEGG: pca:Pcar_0534 transposase IS4 family
YP_942814.1	TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: lpf:lpl2839 hypothetical protein
YP_942815.1	TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: lpf:plpl0049 hypothetical protein
YP_942816.1	TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: lpf:lpl2841 hypothetical protein
YP_942817.1	TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: plu:plu1796 hypothetical protein
YP_942818.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppr:PBPRB0628 hypothetical fumarylacetoacetate hydrolase family protein
YP_942819.1	KEGG: cps:CPS_2996 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein
YP_942820.1	KEGG: cps:CPS_2995 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit
YP_942821.1	TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: plu:plu2663 integration host factor alpha chain (IHF-alpha)
YP_942822.1	PFAM: Silent information regulator protein Sir2; KEGG: vch:VC1509 nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase
YP_942823.1	KEGG: ilo:IL1308 hypothetical protein
YP_942824.1	KEGG: pha:PSHAa1276 hypothetical protein
YP_942825.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: ilo:IL2355 choline kinase involved in LPS biosynthesis
YP_942826.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_942827.1	PFAM: FAD dependent oxidoreductase; KEGG: cps:CPS_0260 hypothetical protein
YP_942828.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_942829.1	KEGG: ppr:PBPRA1377 hypothetical protein
YP_942830.1	KEGG: vpa:VPA0046 methylated-DNA-protein-cysteine S-methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein
YP_942831.1	KEGG: ppr:PBPRB0663 hypothetical protein
YP_942832.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pfo:Pfl_0801 ornithine decarboxylase
YP_942833.1	PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bth:BT0804 putative carbon-nitrogen hydrolase
YP_942834.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: ppr:PBPRA1407 putative ferredoxin
YP_942835.1	PFAM: protein of unknown function DUF162; KEGG: ppr:PBPRA1408 hypothetical protein
YP_942836.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ppr:PBPRA1409 conserved hypothetical iron-sulphur protein
YP_942837.1	PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: ppr:PBPRA1410 hypothetical protein
YP_942838.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: ppr:PBPRA1411 putative L-lactate permease
YP_942839.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA1412 putative transcriptional regulator, LysR family
YP_942840.1	PFAM: NosL family protein; KEGG: ppr:PBPRB0851 hypothetical NosL protein
YP_942841.1	PFAM: ABC-2 type transporter; KEGG: ppr:PBPRB0850 hypothetical nitrous oxide metabolic protein
YP_942842.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRB0849 hypothetical NosF protein
YP_942843.1	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: ppr:PBPRB0848 hypothetical NosD, nitrous oxidase accessory protein
YP_942844.1	reduces nitrous oxide to nitrogen
YP_942845.1	PFAM: FMN-binding domain protein; KEGG: ppr:PBPRB0846 hypothetical NosR, regulator of nitric oxide reductase transcription
YP_942846.1	PFAM: Ig domain protein, group 2 domain protein; KEGG: rfr:Rfer_1881 Ig-like, group 2
YP_942847.1	KEGG: cps:CPS_3098 hypothetical protein
YP_942848.1	KEGG: dps:DP0934 hypothetical protein
YP_942849.1	PFAM: protein of unknown function DUF81; KEGG: son:SO2846 hypothetical protein
YP_942850.1	KEGG: cps:CPS_0569 hypothetical protein
YP_942853.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_942854.1	PFAM: Orn/Lys/Arg decarboxylase, major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pat:Patl_1299 glycine hydroxymethyltransferase
YP_942855.1	PFAM: ATP-cone domain protein; KEGG: pha:PSHAa2375 transcriptional regulator
YP_942856.1	KEGG: ppr:PBPRA0797 putative pyrimidine deaminase/pyrimidine reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein
YP_942857.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_942858.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: vvy:VV0863 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
YP_942859.1	PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: vpa:VP0682 riboflavin synthase, beta subunit
YP_942860.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: eca:ECA1128 N utilization substance protein B
YP_942861.1	KEGG: pat:Patl_3913 hypothetical protein
YP_942862.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: eba:ebA4464 hypothetical protein
YP_942863.1	KEGG: cps:CPS_4817 peptide methionine sulfoxide reductase MsrA; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_942864.1	KEGG: sdn:Sden_0379 hypothetical protein
YP_942865.1	PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: son:SO4323 GGDEF domain protein
YP_942866.1	PFAM: FAD linked oxidase domain protein; KEGG: ppr:PBPRA1294 hypothetical Fe-S oxidoreductase
YP_942867.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: vch:VCA0580 hypothetical protein
YP_942868.1	SMART: RNA binding S1 domain protein; KEGG: vpa:VP1613 hypothetical protein
YP_942869.1	PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel
YP_942870.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: vfi:VFA0210 integral membrane protein
YP_942871.1	catalyzes the formation of inosine from adenosine
YP_942872.1	KEGG: son:SO0515 hypothetical protein
YP_942874.1	TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: ppr:PBPRA2999 putative exodeoxyribonuclease V
YP_942875.1	TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: vfi:VF0582 exodeoxyribonuclease V beta chain
YP_942876.1	TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: vvu:VV11797 ATP-dependent exoDNAse alpha subunit
YP_942877.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cps:CPS_3090 YbaK/EbsC protein
YP_942878.1	KEGG: dps:DP1377 hypothetical protein
YP_942879.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pca:Pcar_3029 conserved hypothetical protein TIGR00427
YP_942880.1	TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: pat:Patl_3137 trigger factor
YP_942881.1	KEGG: ppr:PBPRA2637 putative ATP-dependent Clp protease, proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP
YP_942882.1	binds and unfolds substrates as part of the ClpXP protease
YP_942883.1	KEGG: son:SO1796 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_942884.1	PFAM: histone family protein DNA-binding protein; KEGG: pha:PSHAa2059 DNA-binding protein
YP_942885.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppr:PBPRA2633 putative peptidyl-prolyl cis-trans isomerase D
YP_942886.1	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_942887.1	PFAM: DsrC family protein; KEGG: pha:PSHAa1687 anaerobic sulfite reductase subunit gamma
YP_942888.1	TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: plu:plu1778 hypothetical protein
YP_942889.1	PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: vpa:VP0879 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
YP_942890.1	PFAM: porin, Gram-negative type; KEGG: vvy:VV2720 outer membrane protein OmpU
YP_942891.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_942892.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: metR; transcriptional activator MetR
YP_942893.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: ppr:PBPRA2010 putative molybdopterin biosynthesis protein MoeA
YP_942894.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_942895.1	PFAM: carbonic anhydrase; KEGG: hch:HCH_00805 carbonic anhydrase
YP_942896.1	KEGG: cps:CPS_1053 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_942897.1	PFAM: protein of unknown function DUF462; KEGG: vch:VC2113 hypothetical protein
YP_942898.1	PFAM: thioesterase superfamily protein; KEGG: ppr:PBPRA1461 hypothetical protein
YP_942899.1	PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family
YP_942902.1	KEGG: vch:VC1498 GAF domain-containing protein
YP_942903.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_942904.1	KEGG: son:SO4011 hypothetical protein
YP_942905.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: pat:Patl_4071 phosphoesterase, PA-phosphatase related
YP_942906.1	KEGG: vch:VC2487 hypothetical protein
YP_942907.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_942908.1	PFAM: fatty acid desaturase; KEGG: ppr:PBPRB0742 hypothetical putative delta-9 fatty acid desaturase
YP_942909.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpn:lpg1172 TPR repeat protein
YP_942911.1	PFAM: Radical SAM domain protein; KEGG: ppr:PBPRA1252 hypothetical pyruvate formate lyase-activating enzyme
YP_942912.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hch:HCH_03305 FOG: TPR repeat
YP_942913.1	PFAM: protein of unknown function DUF1555; KEGG: hch:HCH_05909 protein of unknown function (DUF1555)
YP_942914.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0987 rieske 2Fe-2S family protein
YP_942915.1	PFAM: protein of unknown function DUF59; KEGG: hch:HCH_01409 predicted metal-sulfur cluster biosynthetic enzyme
YP_942916.1	TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_4273 SUF system FeS assembly protein
YP_942917.1	TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; KEGG: noc:Noc_2487 cysteine desulphurases, SufS
YP_942918.1	TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: pol:Bpro_4271 FeS assembly protein SufD
YP_942919.1	KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase
YP_942920.1	with SufCD activates cysteine desulfurase SufS
YP_942921.1	KEGG: ecc:c2599 hypothetical protein YegL
YP_942922.1	KEGG: ppr:PBPRB1782 putative transposase
YP_942923.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_942925.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_402 probable ATP-binding component of ABC transporter
YP_942926.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_403 probable permease of ABC transporter
YP_942927.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_405 probable permease of ABC transporter
YP_942928.1	PFAM: extracellular solute-binding protein, family 3; KEGG: atc:AGR_L_407 probable binding protein component of ABC transporter
YP_942929.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bth:BT1616 hypothetical protein
YP_942930.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pol:Bpro_1463 putative protein-S-isoprenylcysteine methyltransferase-like
YP_942931.1	KEGG: gme:Gmet_2469 fibronectin, type III
YP_942933.1	PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_2675 initiation factor 2
YP_942934.1	KEGG: ilo:IL2326 hypothetical protein
YP_942935.1	PFAM: Uncharacterized protein UPF0114; KEGG: pcr:Pcryo_2515 Uncharacterized protein UPF0114
YP_942936.1	KEGG: sdn:Sden_3438 K+-dependent Na+/Ca+ exchanger related-protein
YP_942937.1	KEGG: cps:CPS_3965 hypothetical protein
YP_942938.1	PFAM: carbonic anhydrase; KEGG: noc:Noc_1341 carbonic anhydrase
YP_942939.1	KEGG: cps:CPS_3965 hypothetical protein
YP_942940.1	PFAM: pseudouridine synthase; KEGG: sdn:Sden_0482 pseudouridine synthase
YP_942941.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppr:PBPRB0199 putative ATP-dependent RNA helicase
YP_942942.1	PFAM: heat shock protein Hsp20; KEGG: mac:MA0133 small heat shock protein
YP_942943.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mma:MM3105 putative cytosine deaminase
YP_942944.1	KEGG: abo:ABO_1884 hypothetical protein
YP_942946.1	KEGG: sdn:Sden_3399 transposase, IS4
YP_942947.1	KEGG: neu:NE2504 transposase IS4 family
YP_942948.1	KEGG: dps:DP2505 hypothetical protein
YP_942949.1	KEGG: cps:CPS_2457 hypothetical protein
YP_942950.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain
YP_942951.1	PFAM: peptidase M23B; KEGG: vpa:VPA1649 putative TagE protein
YP_942952.1	PFAM: protein of unknown function DUF583; KEGG: ppr:PBPRA0655 hypothetical Ccm2-related protein
YP_942953.1	KEGG: pat:Patl_0152 deoxyribodipyrimidine photolyase; TIGRFAM: DNA photolyase, FAD- binding- domain protein; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein
YP_942954.1	PFAM: DNA photolyase, FAD-binding; KEGG: pat:Patl_0151 deoxyribodipyrimidine photolyase
YP_942955.1	KEGG: pcr:Pcryo_0448 hypothetical protein
YP_942956.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: son:SO4169 hypothetical protein
YP_942957.1	PFAM: transposase, IS4 family protein; KEGG: son:SOA0162 ISSod6, transposase
YP_942958.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: rxy:Rxyl_0955 multiple antibiotic resistance (MarC)-related proteins
YP_942960.1	KEGG: tbd:Tbd_1018 putative lipoprotein
YP_942963.1	KEGG: son:SO4135 ISSod7, transposase
YP_942965.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_942966.1	KEGG: pol:Bpro_1827 hypothetical protein
YP_942967.1	KEGG: plt:Plut_1514 carbon-nitrogen hydrolase family protein
YP_942968.1	PFAM: protein of unknown function UPF0061; KEGG: dps:DP3021 hypothetical protein
YP_942969.1	PFAM: protein of unknown function DUF125, transmembrane; KEGG: rfr:Rfer_1963 protein of unknown function DUF125, transmembrane
YP_942970.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_942971.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sdn:Sden_2395 glutathione-dependent formaldehyde-activating, GFA
YP_942972.1	PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa2409 permease
YP_942973.1	PFAM: AFG1-family ATPase; KEGG: pat:Patl_2704 AFG1-like ATPase
YP_942975.1	PFAM: FAD dependent oxidoreductase; KEGG: ppr:PBPRB0641 hypothetical protein
YP_942976.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pst:PSPTO_1638 ABC transporter, ATP-binding protein
YP_942977.1	PFAM: protein of unknown function DUF214; KEGG: vvy:VV1432 ABC-type antimicrobial peptide transport system, permease component
YP_942978.1	KEGG: ppr:PBPRA1555 hypothetical secreted hydrolase
YP_942979.1	KEGG: son:SO2978 prophage LambdaSo, site-specific recombinase, phage integrase family
YP_942982.1	KEGG: yps:YPTB1810 putative small subunit bacteriophage terminase
YP_942983.1	KEGG: ppr:PBPRC0040 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases-like
YP_942984.1	TIGRFAM: CRISPR-associated protein, Cse3 family; KEGG: ppr:PBPRC0039 hypothetical protein
YP_942985.1	KEGG: ppr:PBPRC0038 hypothetical protein
YP_942986.1	TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: ppr:PBPRC0037 hypothetical protein
YP_942987.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: ppr:PBPRC0036 hypothetical protein
YP_942988.1	unknown function; in E. coli this protein is regulated by BaeR, a protein involved in resistance to novobiocin and deoxycholate
YP_942989.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: ppr:PBPRC0034 hypothetical protein
YP_942990.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: ppr:PBPRC0033 hypothetical protein
YP_942991.1	PFAM: Resolvase, N-terminal domain; KEGG: ppr:PBPRA0888 hypothetical resolvase
YP_942992.1	KEGG: spj:MGAS2096_Spy0566 hypothetical protein
YP_942993.1	KEGG: son:SO0390.1 hypothetical protein
YP_942994.1	PFAM: Prophage CP4-57 regulatory; KEGG: lpn:lpg2563 prophage regulatory protein-like
YP_942995.1	PFAM: Prophage CP4-57 regulatory; KEGG: vvy:VV0810 predicted transcriptional regulator
YP_942997.1	PFAM: phage integrase family protein; KEGG: vvy:VV0817 phage integrase
YP_942998.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_942999.1	PFAM: cyclase/dehydrase; KEGG: vpa:VP0645 hypothetical protein
YP_943000.1	PFAM: protein of unknown function UPF0125; KEGG: cps:CPS_3827 hypothetical protein
YP_943001.1	PFAM: SmpA/OmlA domain protein; KEGG: ppr:PBPRA0693 hypothetical small protein A
YP_943002.1	PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: vvu:VV10254 glutamyl-tRNA reductase
YP_943003.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cps:CPS_3552 peptide chain release factor 1
YP_943004.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0744 HemK protein
YP_943005.1	KEGG: son:SO3830 hypothetical protein
YP_943006.1	KEGG: vch:VC2176 conserved hypothetical protein
YP_943007.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_943008.1	PFAM: protein of unknown function DUF423; KEGG: pfl:PFL_5852 protein of unknown function (DUF423) superfamily
YP_943009.1	KEGG: vfi:VF0593 methyltransferase
YP_943010.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: vfi:VF1158 hypothetical membrane associated protein
YP_943011.1	KEGG: vfi:VF1157 cell wall degradation protein
YP_943012.1	PFAM: PspC domain protein; KEGG: ppr:PBPRA2437 hypothetical phage shock protein C
YP_943013.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_943015.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ppr:PBPRB0852 putative peptidyl-prolyl cis-trans isomerase C
YP_943016.1	TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_04101 predicted sugar phosphatase of the HAD superfamily
YP_943017.1	PFAM: beta-lactamase; KEGG: cps:CPS_1414 putative beta-lactamase
YP_943018.1	KEGG: son:SO1736 hypothetical protein
YP_943019.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; KEGG: vfi:VF1754 methionyl-tRNA synthetase
YP_943020.1	KEGG: sdy:SDY_2182 putative ATPase
YP_943021.1	TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: sdn:Sden_2533 glutamyl-tRNA synthetase
YP_943022.1	PFAM: Rh family protein/ammonium transporter; KEGG: hch:HCH_02676 ammonia permease
YP_943023.1	TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sdn:Sden_2093 uracil phosphoribosyltransferase
YP_943024.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sdn:Sden_1641 uracil-xanthine permease
YP_943025.1	KEGG: dra:DR1284 hypothetical protein
YP_943027.1	TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rsp:RSP_1535 hypothetical protein
YP_943028.1	KEGG: gme:Gmet_2339 putative acyl carrier protein
YP_943029.1	YqjC Bacillus subtilis ortholog; KEGG: cac:CAC2192 lactoylglutathione lyase, YQJC B.subtilis ortholog
YP_943030.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: gme:Gmet_2338 membrane bound O-acyl transferase, MBOAT
YP_943031.1	KEGG: bca:BCE0977 hypothetical protein
YP_943032.1	PFAM: Integrase, catalytic region; KEGG: lpf:lpl1576 hypothetical protein
YP_943033.1	PFAM: transposase IS3/IS911 family protein; KEGG: son:SOA0146 ISSod1, transposase OrfA
YP_943034.1	PFAM: protein of unknown function DUF107; KEGG: vpa:VPA1105 putative membrane protein
YP_943035.1	PFAM: band 7 protein; KEGG: vpa:VPA1106 putative stomatin-like protein
YP_943036.1	KEGG: vpa:VPA1207 hypothetical protein
YP_943037.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ppr:PBPRA2759 putative iron-containing alcohol dehydrogenase
YP_943038.1	PFAM: phosphoribosyl-AMP cyclohydrolase; MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ppr:PBPRA1085 putative phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
YP_943039.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_943040.1	PFAM: protein of unknown function DUF411; KEGG: vfi:VF0780 CopG protein
YP_943041.1	KEGG: ilo:IL1220 hypothetical protein
YP_943042.1	KEGG: sil:SPO3275 hypothetical protein
YP_943044.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; histidine biosynthesis; KEGG: vfi:VF1017 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
YP_943045.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: vfi:VF1016 imidazole glycerol phosphate synthase subunit HisH
YP_943046.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_943047.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_943048.1	PFAM: histidinol dehydrogenase; KEGG: vpa:VP1138 histidinol dehydrogenase
YP_943049.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_943050.1	KEGG: vpa:VPA0978 hypothetical protein
YP_943051.1	KEGG: cps:CPS_0259 hypothetical protein
YP_943052.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_943053.1	Multifunctional regulator of fatty acid metabolism
YP_943054.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: cps:CPS_2759 cell division protein FtsK
YP_943055.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pmu:PM0256 outer membrane lipoproteins carrier protein
YP_943056.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ppr:PBPRA1164 putative ATPase protein
YP_943057.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: vpa:VP3028 CrcB protein
YP_943058.1	KEGG: ppr:PBPRA1165 putative seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa
YP_943059.1	PFAM: major facilitator superfamily MFS_1; KEGG: vvy:VV2596 putative AmpG protein
YP_943060.1	TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: vfi:VF1707 ribonuclease D
YP_943061.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: lic:LIC11822 3-isopropylmalate dehydratase large subunit
YP_943062.1	KEGG: lic:LIC11821 3-isopropylmalate dehydratase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein
YP_943064.1	PFAM: peptidase C1A, papain; KEGG: dre:368704 cathepsin C
YP_943066.1	KEGG: cps:CPS_1176 hypothetical protein
YP_943068.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: vfi:VF1780 ferredoxin--NADP reductase
YP_943069.1	KEGG: cbu:CBU_0730 hypothetical protein
YP_943070.1	PFAM: Mammalian cell entry related domain protein; KEGG: cje:Cj1648 putative ABC transport system substrate-bindin protein
YP_943071.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS2022 ABC transporter, ATP-binding protein
YP_943072.1	PFAM: protein of unknown function DUF140; KEGG: cje:Cj1646 putative ABC transport system permease protein
YP_943073.1	PFAM: conserved hypothetical protein 698; KEGG: ppr:PBPRB0970 hypothetical protein
YP_943074.1	KEGG: cps:CPS_3105 hypothetical protein
YP_943075.1	PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: cps:CPS_3104 polyunsaturated fatty acid synthase PfaA
YP_943076.1	KEGG: cps:CPS_3103 polyunsaturated fatty acid synthase PfaB
YP_943077.1	PFAM: beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: cps:CPS_3102 polyunsaturated fatty acid synthase PfaC
YP_943078.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: cps:CPS_3099 polyunsaturated fatty acid synthase PfaD
YP_943079.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4691 substrate-binding transcriptional regulator, LysR family
YP_943080.1	PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: rde:RD1_0073 hypothetical protein
YP_943081.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rde:RD1_0072 4Fe-4S binding domain protein, putative
YP_943082.1	PFAM: protein of unknown function DUF162; KEGG: rde:RD1_0071 hypothetical protein
YP_943083.1	KEGG: cps:CPS_0257 hypothetical protein
YP_943085.1	KEGG: pfo:Pfl_5227 hypothetical protein
YP_943086.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pfl:PFL_3308 diguanylate cyclase, putative
YP_943087.1	KEGG: pha:PSHAa1466 hypothetical protein
YP_943088.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: cps:CPS_4217 oxidoreductase, 2OG-Fe(II) oxygenase family
YP_943089.1	PFAM: ROK family protein; KEGG: vch:VC0270 ROK family protein
YP_943090.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: gme:Gmet_2594 lipolytic enzyme, G-D-S-L
YP_943091.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pfo:Pfl_2241 glyoxalase/bleomycin resistance protein/dioxygenase
YP_943092.1	PFAM: protein of unknown function DUF81; KEGG: cps:CPS_2461 putative membrane protein
YP_943093.1	KEGG: hch:HCH_04258 hypothetical protein
YP_943094.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sme:SMa0279 hypothetical protein
YP_943096.1	KEGG: cps:CPS_2170 hypothetical protein
YP_943097.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: son:SO3857 PAP2 family protein
YP_943098.1	PFAM: diacylglycerol kinase; KEGG: sat:SYN_02353 putative diacylglycerolkinase
YP_943099.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppr:PBPRB1064 hypothetical protein
YP_943101.1	PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: eca:ECA0923 hypothetical protein
YP_943102.1	PFAM: LGFP repeat protein; KEGG: nfa:pnf1740 hypothetical protein
YP_943103.1	KEGG: vfi:VFA1062 transporter, NRAMP family
YP_943104.1	SMART: zinc finger, CDGSH-type domain protein; KEGG: cps:CPS_2171 hypothetical protein
YP_943105.1	KEGG: sde:Sde_0294 putative transcriptional regulator, fis family
YP_943106.1	KEGG: sdn:Sden_1261 hypothetical protein
YP_943107.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4235 membrane protein
YP_943108.1	KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAC repeat-containing protein
YP_943109.1	KEGG: pae:PA2843 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II
YP_943111.1	KEGG: son:SO0822 outer membrane efflux family protein
YP_943112.1	PFAM: isochorismatase hydrolase; KEGG: bbr:BB1959 putative nicotinamidase
YP_943113.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_943114.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: vvy:VVA0614 acetyltransferase
YP_943115.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: mbu:Mbur_0646 magnesium and cobalt transport protein CorA
YP_943116.1	PFAM: amino acid permease-associated region; KEGG: sru:SRU_2259 Na-K-Cl cotransporter, putative
YP_943117.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_3399 MscS mechanosensitive ion channel
YP_943118.1	KEGG: ppr:PBPRB1261 hypothetical protein
YP_943119.1	PFAM: protein of unknown function DUF399; KEGG: vfi:VFA0756 putative lipoprotein
YP_943120.1	KEGG: pat:Patl_2035 putative cytochrome c oxidase, subunit I
YP_943121.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_943123.1	KEGG: hch:HCH_00352 hypothetical protein
YP_943124.1	KEGG: hch:HCH_00351 hypothetical protein
YP_943125.1	PFAM: Glutathione S-transferase, C-terminal domain; KEGG: ppr:PBPRA1656 putative glutathione S-transferase
YP_943126.1	KEGG: ppr:PBPRB1424 hypothetical protein
YP_943127.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_943128.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: bba:Bd1513 regulator protein PilR
YP_943129.1	KEGG: mxa:MXAN_6865 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_943130.1	PFAM: response regulator receiver; KEGG: det:DET1294 DNA-binding response regulator
YP_943131.1	involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins
YP_943132.1	KEGG: hsa:26064 retinoic acid induced 14
YP_943133.1	KEGG: cya:CYA_0826 gas vesicle protein GvpN; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_943136.1	KEGG: noc:Noc_0459 hypothetical protein
YP_943137.1	KEGG: ppr:PBPRB1414 hypothetical protein
YP_943138.1	PFAM: acriflavin resistance protein; KEGG: sdn:Sden_2206 acriflavin resistance protein
YP_943139.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_2205 membrane-fusion protein
YP_943140.1	PFAM: regulatory protein, TetR; KEGG: sdn:Sden_2204 regulatory protein, TetR
YP_943142.1	TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: son:SO0627 putative 2'-5' RNA ligase
YP_943144.1	KEGG: csa:Csal_1578 hypothetical protein
YP_943145.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein
YP_943146.1	KEGG: noc:Noc_1323 hypothetical protein
YP_943147.1	KEGG: ppr:PBPRB0493 hypothetical protein
YP_943150.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdn:Sden_1897 binding-protein-dependent transport systems inner membrane component
YP_943151.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdn:Sden_1898 ABC transporter related
YP_943152.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: sdn:Sden_1899 phosphonate-binding periplasmic protein
YP_943153.1	KEGG: plu:plu0955 D-erythrose 4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_943154.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ppr:PBPRA1551 hypothetical nucleoside-diphosphate-sugar epimerase
YP_943155.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pha:PSHAa2023 RlpA-like lipoprotein precursor
YP_943156.1	SMART: Water Stress and Hypersensitive response; KEGG: psb:Psyr_3032 lipoprotein, putative
YP_943157.1	KEGG: pol:Bpro_3282 hypothetical protein
YP_943158.1	catalyzes the removal of amino acids from the N termini of peptides
YP_943159.1	KEGG: sru:SRU_0144 putative redox sensing protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein
YP_943160.1	KEGG: pat:Patl_0276 esterase/lipase/thioesterase family protein
YP_943161.1	KEGG: sma:SAV4164 hypothetical protein
YP_943164.1	PFAM: SOUL heme-binding protein; KEGG: pcr:Pcryo_1702 SOUL heme-binding protein
YP_943165.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rde:RD1_0794 cytochrome oxidase, subunit II, putative
YP_943166.1	PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rde:RD1_0793 cytochrome oxidase subunit II, putative
YP_943167.1	KEGG: vch:VCA0343 hypothetical protein
YP_943168.1	PFAM: regulatory protein, TetR; KEGG: pat:Patl_4127 transcriptional regulator, TetR family
YP_943169.1	PFAM: amine oxidase; KEGG: pha:PSHAa1280 hypothetical protein
YP_943170.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pat:Patl_4128 glutathione S-transferase-like
YP_943171.1	KEGG: pha:PSHAb0211 hypothetical protein
YP_943172.1	PFAM: glycosyl transferase, group 1; KEGG: cps:CPS_0439 hypothetical protein
YP_943173.1	KEGG: sdn:Sden_3720 transposase, mutator type
YP_943174.1	Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance
YP_943175.1	PFAM: protein of unknown function DUF1499; KEGG: noc:Noc_0976 protein of unknown function DUF1499
YP_943176.1	PFAM: peptidase M48, Ste24p; KEGG: ppr:PBPRB0661 hypothetical protein
YP_943177.1	KEGG: ppr:PBPRA1013 hypothetical protein
YP_943178.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cps:CPS_0986 major facilitator family transporter
YP_943179.1	PFAM: protein of unknown function DUF81; KEGG: vfi:VF1119 hypothetical protein
YP_943180.1	PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: pha:PSHAa0632 inner membrane protein
YP_943181.1	PFAM: dienelactone hydrolase; KEGG: hch:HCH_02826 dienelactone hydrolase and related enzyme
YP_943182.1	PFAM: heat shock protein Hsp20; KEGG: ayw:AYWB_017 molecular chaperone
YP_943183.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cps:CPS_1590 ATP-dependent RNA helicase, DEAD box family
YP_943184.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cte:CT0994 cytidine and deoxycytidylate deaminase family protein
YP_943185.1	PFAM: oxidoreductase domain protein; KEGG: yps:YPTB3473 possible MocA-family oxidoreductase
YP_943186.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: vch:VC2716 hypothetical protein
YP_943187.1	KEGG: vfi:VFA0955 hypothetical protein
YP_943188.1	PFAM: NUDIX hydrolase; KEGG: ppr:PBPRB0617 putative MutT/NUDIX family protein
YP_943189.1	KEGG: ppr:PBPRA1549 hypothetical protein
YP_943190.1	PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: rpd:RPD_2762 ion transport 2
YP_943191.1	PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family
YP_943192.1	PFAM: metallophosphoesterase; KEGG: noc:Noc_0403 metallophosphoesterase
YP_943195.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: sat:SYN_02541 membrane spanning protein ribonuclease BN-like family
YP_943196.1	KEGG: neu:NE2041 hypothetical protein
YP_943197.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: lic:LIC11128 GGDEF family protein
YP_943198.1	PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12442 similar to hydrolase
YP_943199.1	KEGG: pat:Patl_3555 hypothetical protein
YP_943200.1	KEGG: pat:Patl_3554 hypothetical protein
YP_943201.1	PFAM: sulfotransferase; KEGG: noc:Noc_0082 sulfotransferase
YP_943202.1	PFAM: small multidrug resistance protein; KEGG: pat:Patl_0437 small multidrug resistance protein
YP_943203.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_943204.1	PFAM: permease; KEGG: cps:CPS_3357 putative permease
YP_943205.1	KEGG: reu:Reut_B4599 thiol-disulfide isomerase and thioredoxins
YP_943206.1	PFAM: cytochrome c, class I; KEGG: gox:GOX0585 cytochrome c subunit of aldehyde dehydrogenase
YP_943207.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gox:GOX0586 membrane-bound aldehyde dehydrogenase, small subunit
YP_943208.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: gox:GOX0587 membrane-bound aldehyde dehydrogenase, large subunit
YP_943209.1	KEGG: sdn:Sden_2225 hypothetical protein
YP_943210.1	PFAM: protein of unknown function DUF182; KEGG: son:SO3051 hypothetical xanthine dehydrogenase accessory factor
YP_943211.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; KEGG: tbd:Tbd_1411 putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain
YP_943213.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dps:DP1302 similar to NADH dehydrogenase
YP_943215.1	KEGG: eba:ebA2147 conserved hypothetical protein, contains PAS domains; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_943216.1	PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type
YP_943217.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_943219.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: hch:HCH_00510 arsenite efflux pump ACR3 and related permease
YP_943220.1	PFAM: Patatin; KEGG: cps:CPS_2826 patatin-like phospholipase family protein
YP_943221.1	PFAM: protein of unknown function DUF1415; KEGG: ilo:IL2495 hypothetical protein
YP_943222.1	PFAM: SMC domain protein; KEGG: cps:CPS_2616 hypothetical protein
YP_943223.1	KEGG: cps:CPS_2617 hypothetical protein
YP_943224.1	KEGG: cps:CPS_2618 hypothetical protein
YP_943225.1	KEGG: hch:HCH_06401 hypothetical protein
YP_943227.1	KEGG: pat:Patl_2982 hypothetical protein
YP_943228.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_943229.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_943230.1	KEGG: vvu:VV12187 hypothetical protein
YP_943232.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pha:PSHAa0292 peptidyl-prolyl cis-trans isomerase
YP_943233.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_943234.1	KEGG: sde:Sde_1490 hypothetical protein
YP_943235.1	PFAM: Thioredoxin domain; KEGG: eca:ECA1220 putative thioredoxin
YP_943236.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: ppr:PBPRA2898 putative dihydrodipicolinate synthase
YP_943237.1	PFAM: NlpBDapX family lipoprotein; KEGG: son:SO1880 lipoprotein-34 NlpB
YP_943238.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_943239.1	PFAM: response regulator receiver; KEGG: vvy:VV1604 response regulator of citrate/malate metabolism
YP_943240.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ppr:PBPRB0238 putative Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase
YP_943241.1	TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: sdn:Sden_1667 PrpF, AcnD-accessory
YP_943242.1	Catalyzes the conversion of citrate to isocitrate
YP_943243.1	KEGG: cps:CPS_2821 putative 2-methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase
YP_943244.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_943245.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ppr:PBPRB0234 putative transcriptional regulator, GntR family
YP_943246.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: vpa:VP1653 putative tricarboxylic transport TctA
YP_943247.1	KEGG: ppr:PBPRA2755 putative tricarboxylic transport TctB
YP_943248.1	PFAM: Uncharacterized protein UPF0065; KEGG: ppr:PBPRA2754 putative tricarboxylic transport TctC
YP_943249.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: vfi:VFA0956 hydrolase (HAD superfamily)
YP_943251.1	KEGG: gsu:GSU1169 hypothetical protein
YP_943252.1	KEGG: pha:PSHAa1487 hypothetical protein
YP_943253.1	PFAM: band 7 protein; KEGG: pat:Patl_0198 band 7 protein
YP_943254.1	PFAM: protein of unknown function DUF107; KEGG: pat:Patl_0197 protein of unknown function DUF107
YP_943255.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_4245 GGDEF domain protein
YP_943256.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3760 putative cold-shock DNA-binding domain protein
YP_943257.1	KEGG: cps:CPS_1386 hypothetical protein
YP_943258.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: pcr:Pcryo_1246 phosphoesterase, PA-phosphatase related
YP_943259.1	PFAM: NUDIX hydrolase; KEGG: ppr:PBPRA1244 hypothetical protein
YP_943260.1	KEGG: sde:Sde_3411 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_943261.1	KEGG: pha:PSHAa1013 hypothetical protein
YP_943262.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4666 transcriptional regulator, LysR family
YP_943263.1	KEGG: cps:CPS_2023 succinate-semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase
YP_943264.1	KEGG: cps:CPS_4664 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III
YP_943265.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0259 MscS mechanosensitive ion channel
YP_943266.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: vch:VC1023 conserved hypothetical protein
YP_943267.1	PFAM: lipase, class 3; KEGG: cps:CPS_2407 lipase family protein
YP_943269.1	KEGG: dps:DP0519 hypothetical protein
YP_943270.1	PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: sdn:Sden_1234 type III restriction enzyme, res subunit
YP_943271.1	PFAM: restriction modification system DNA specificity domain; KEGG: ecs:ECs5306 type I restriction-modification enzyme S subunit
YP_943272.1	KEGG: ppr:PBPRA0687 hypothetical protein
YP_943273.1	KEGG: ppr:PBPRA0689 hypothetical protein
YP_943274.1	PFAM: phage integrase family protein; KEGG: psp:PSPPH_2410 site-specific recombinase, phage integrase family
YP_943275.1	SMART: metal-dependent phosphohydrolase, HD region; KEGG: pfl:PFL_4240 chemotaxis sensory transducer family protein
YP_943276.1	PFAM: Inosine/uridine-preferring nucleoside hydrolase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psp:PSPPH_2471 inosine-uridine preferring nucleoside hydrolase
YP_943277.1	PFAM: adenylate cyclase; KEGG: syn:slr0698 hypothetical protein
YP_943278.1	KEGG: tcx:Tcr_2112 hypothetical protein
YP_943279.1	PFAM: protein of unknown function DUF480; KEGG: vvy:VVA1225 hypothetical protein
YP_943280.1	PFAM: ADP-ribosylation/Crystallin J1; KEGG: hch:HCH_04135 ADP-ribosylglycohydrolase
YP_943281.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02633 beta-lysine acetyltransferase
YP_943283.1	KEGG: pcr:Pcryo_0304 hypothetical protein
YP_943285.1	PFAM: protein of unknown function DUF490; KEGG: ppr:PBPRA0380 hypothetical protein
YP_943286.1	PFAM: surface antigen (D15); KEGG: pat:Patl_0260 surface antigen (D15)
YP_943287.1	putative metalloprotease
YP_943288.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pha:PSHAa2488 peptidyl-prolyl cis-trans isomerase C (rotamase C)
YP_943289.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2602 ABC transporter related
YP_943290.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VV0007 ABC-type amino acid transport system, permease component
YP_943291.1	PFAM: extracellular solute-binding protein, family 3; KEGG: vfi:VF0008 cystine-binding protein
YP_943292.1	KEGG: vfi:VFA0745 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase
YP_943293.1	TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP1115 biotin synthesis protein BioC
YP_943294.1	PFAM: aminotransferase, class I and II; KEGG: vfi:VFA0747 8-amino-7-oxononanoate synthase
YP_943295.1	KEGG: pat:Patl_2557 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_943296.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: ppr:PBPRA2330 putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase
YP_943297.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_943298.1	KEGG: pha:PSHAa1267 hypothetical protein
YP_943299.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: pat:Patl_0590 dimethylmenaquinone methyltransferase
YP_943303.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3143 GCN5-related N-acetyltransferase
YP_943304.1	KEGG: cps:CPS_3381 hypothetical protein
YP_943305.1	KEGG: cps:CPS_2680 hypothetical protein
YP_943306.1	KEGG: pol:Bpro_4795 hypothetical protein
YP_943309.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: vpa:VPA0296 putative oxidoreductase protein
YP_943310.1	PFAM: Ion transport protein; Ion transport 2 domain protein,; KEGG: dps:DP1262 similar to voltage-gated potassium channel
YP_943311.1	PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: ppr:PBPRB1666 hypothetical protein
YP_943312.1	PFAM: regulatory protein, MerR; KEGG: rme:Rmet_5990 transcriptional regulator, MerR family
YP_943313.1	TIGRFAM: mercuric transport protein periplasmic component; KEGG: pol:Bpro_4796 mercuric transport protein periplasmic component
YP_943315.1	KEGG: cps:CPS_2864 hypothetical protein
YP_943316.1	KEGG: cps:CPS_0518 hypothetical protein
YP_943317.1	KEGG: sfr:Sfri_0606 hypothetical protein
YP_943318.1	PFAM: nucleoside recognition domain protein; KEGG: bat:BAS2893 hypothetical protein
YP_943319.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: vfi:VFA1080 transporter, drug/metabolite exporter family
YP_943320.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tko:TK2009 cobalt/zinc/cadmium cation efflux pump protein
YP_943321.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_943322.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: mca:MCA2605 alpha amylase family protein
YP_943323.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_2855 alcohol dehydrogenase, zinc-binding
YP_943324.1	PFAM: extracellular solute-binding protein, family 1; KEGG: vvy:VV1092 ABC-type sugar transport system, periplasmic component
YP_943325.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06081 ABC-type sugar transport system, permease components
YP_943326.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06080 ABC-type sugar transport system, permease component
YP_943327.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_06079 ABC-type sugar transport system, ATPase components
YP_943328.1	KEGG: vvy:VVA0946 hypothetical protein
YP_943329.1	KEGG: vvu:VV20388 hypothetical protein
YP_943330.1	KEGG: vvu:VV20388 hypothetical protein
YP_943331.1	KEGG: gme:Gmet_1851 pentapeptide repeat protein
YP_943332.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_943333.1	PFAM: Colicin V production protein; KEGG: ilo:IL1013 uncharacterized membrane protein
YP_943334.1	PFAM: Sporulation domain protein; KEGG: vfi:VF1693 DedD protein
YP_943335.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: ppr:PBPRA2651 putative folylpolyglutamate synthase/dihydrofolate synthase
YP_943336.1	KEGG: vch:VC0999 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase
YP_943338.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_943339.2	SohB; periplasmic protein; member of the peptidase S49 family
YP_943340.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: son:SO2935 short chain dehydrogenase
YP_943341.1	TIGRFAM: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: ppr:PBPRA0219 putative lipid A biosynthesis (kdo)2-(lauroyl)-lipid IVA acyltransferase
YP_943342.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_943343.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_943344.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: sdn:Sden_1912 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_943345.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: vvy:VV2080 para-aminobenzoate synthase, component I
YP_943346.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_943347.1	KEGG: sdn:Sden_2389 hypothetical protein
YP_943348.1	KEGG: vfi:VF1293 ATP-dependent protease La
YP_943349.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_943350.1	TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: vpa:VP2152 protease IV
YP_943351.1	KEGG: ppr:PBPRA0858 hypothetical protein
YP_943352.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plu:plu2821 NADH dehydrogenase
YP_943353.1	PFAM: protein of unknown function UPF0227; KEGG: vfi:VF1142 hypothetical protein
YP_943354.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: yps:YPTB2449 beta-hexosaminidase
YP_943355.1	KEGG: vfi:VF1697 latent nuclear antigen
YP_943356.1	KEGG: vfi:VF1697 latent nuclear antigen
YP_943357.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: vch:VC2107 aspartate-semialdehyde dehydrogenase, putative
YP_943358.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cps:CPS_3806 erythronate-4-phosphate dehydrogenase
YP_943359.1	PFAM: beta-ketoacyl synthase; KEGG: vfi:VF1700 3-oxoacyl-[acyl-carrier-protein] synthase
YP_943360.1	PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: vfi:VF1701 hypothetical protein
YP_943361.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_943362.1	PFAM: alpha/beta hydrolase fold; KEGG: son:SO1743 hydrolase, alpha/beta hydrolase fold family
YP_943363.1	Catalyzes the specific recognition and activation of amino acids during peptide synthesis
YP_943364.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ppr:PBPRA1465 steroid dehydrogenase
YP_943367.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent
YP_943368.1	PFAM: stress protein; KEGG: yps:YPTB0353 putative tellurite resistance protein
YP_943369.1	KEGG: cps:CPS_3258 sensory box/GGDEF/GAF/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_943371.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bpm:BURPS1710b_A1184 ABC transporter, substrate-binding protein
YP_943372.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2864 ABC transporter, permease protein, putative
YP_943373.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2863 sugar ABC transporter, permease protein, putative
YP_943374.1	PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; KEGG: eca:ECA0851 putative sugar ABC transporter ATP-binding protein
YP_943375.1	PFAM: phosphotransferase system PTS, EIIB protein; KEGG: ppr:PBPRA1203 putative PTS system, glucose-specific IIBC
YP_943376.1	transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer
YP_943377.1	PFAM: glycoside hydrolase, clan GH-D; KEGG: vvy:VVA0166 alpha-galactosidase
YP_943378.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: vfi:VFA0352 UDP-glucose 4-epimerase
YP_943379.1	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P
YP_943380.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_943381.1	KEGG: ppr:PBPRA2079 hypothetical aldose 1-epimerase; TIGRFAM: galactose mutarotase; PFAM: Aldose 1-epimerase
YP_943382.1	forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon
YP_943383.1	KEGG: sat:SYN_02351 cation transport ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein
YP_943384.1	KEGG: mag:amb2165 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_943385.1	PFAM: EAL domain protein; response regulator receiver; KEGG: mag:amb3312 PvrR
YP_943386.1	PFAM: peptidase M24; KEGG: dps:DP1387 similar to dipeptidase
YP_943387.1	KEGG: cps:CPS_4917 amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_943388.1	PFAM: YheO domain protein; KEGG: vvy:VV1021 hypothetical protein
YP_943389.1	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: vvy:VV1022 putative translation initiation inhibitor
YP_943390.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_943391.1	PFAM: Asp/Glu racemase; KEGG: bcn:Bcen_6407 Asp/Glu racemase
YP_943392.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4912 membrane protein
YP_943393.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_4914 C4-dicarboxylate transporter family protein, DctM subunit
YP_943394.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: cps:CPS_4915 C4-dicarboxylate transporter family protein, DctQ subunit
YP_943395.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_4916 putative C4-dicarboxylate-binding periplasmic protein DctP
YP_943396.1	PFAM: UDP-galactopyranose mutase; KEGG: ecj:JW2021 UDP-galactopyranose mutase, FAD/NAD(P)-binding
YP_943397.1	PFAM: polysaccharide biosynthesis protein; KEGG: vfi:VF0170 flippase
YP_943398.1	PFAM: transposase, IS4 family protein; KEGG: ppr:PBPRA1587 putative transposase
YP_943399.1	KEGG: sde:Sde_0281 hypothetical protein
YP_943400.1	PFAM: Ferritin, Dps family protein; KEGG: pat:Patl_3841 ferritin and Dps
YP_943401.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: tel:tlr2037 transcriptional regulator
YP_943402.1	KEGG: vpa:VP3036 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_943403.1	PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; KEGG: hch:HCH_04604 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
YP_943404.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: vpa:VP2513 sulfate permease family protein
YP_943405.1	KEGG: tcx:Tcr_1222 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_943406.1	KEGG: vfi:VFA0685 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_943407.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_943408.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: yps:YPTB2601 PTS system, IIB component, possible mannitol or pentitol permease
YP_943409.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vpa:VPA0231 phosphotransferase enzyme II, A component
YP_943410.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vpa:VPA0232 putative transcriptional regulator
YP_943411.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nar:Saro_1836 pyrimidine 5-nucleotidase
YP_943412.1	PFAM: protein of unknown function DUF45; KEGG: cps:CPS_3293 conserved hypothetical protein
YP_943413.1	PFAM: protein of unknown function UPF0061; KEGG: rba:RB9953 hypothetical protein
YP_943414.1	PFAM: protein of unknown function DUF28; KEGG: vch:VCA0006 hypothetical protein
YP_943415.1	PFAM: glutaredoxin; KEGG: cps:CPS_0640 putative glutaredoxin
YP_943416.1	PFAM: NUDIX hydrolase; KEGG: ngo:NGO0224 putative pyrophosphohydrolase
YP_943417.1	KEGG: noc:Noc_1879 AAA ATPase
YP_943418.1	PFAM: Sterol-binding domain protein; KEGG: vvy:VV2689 putative lipid carrier protein
YP_943419.1	KEGG: rde:RD1_1973 ABC transporter, ATP-binding protein, putative; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_943420.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_943421.1	catalyzes the formation of betaine from betaine aldehyde
YP_943422.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_943423.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: vpa:VPA1111 putative glycine betaine-binding ABC transporter
YP_943424.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_00853 ABC-type proline/glycine betaine transport system, permease component
YP_943425.1	KEGG: hch:HCH_00854 ABC-type proline/glycine betaine transport system, ATPase component; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_943426.1	KEGG: sdn:Sden_0716 putative transporter, BCCT family protein
YP_943427.1	PFAM: regulatory protein, MarR; KEGG: sdn:Sden_0718 regulatory protein, MarR
YP_943428.1	PFAM: transport-associated; KEGG: nmu:Nmul_A1193 transport-associated
YP_943429.1	KEGG: cps:CPS_4052 membrane protein
YP_943430.1	PFAM: NADPH-dependent FMN reductase; KEGG: pmu:PM1472 hypothetical M. pneumoniae
YP_943431.1	PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_3050 D-amino-acid dehydrogenase
YP_943432.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: jan:Jann_0020 amino acid carrier protein
YP_943433.1	KEGG: tte:TTE2168 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_943434.1	KEGG: mmc:Mmcs_0603 ABC transporter related; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_943435.1	PFAM: alpha/beta hydrolase fold; KEGG: ana:alr0039 putative hydrolase
YP_943436.1	KEGG: vpa:VP0092 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_943437.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vpa:VPA0122 hypothetical protein
YP_943438.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: rme:Rmet_2235 transcriptional regulator, DeoR family
YP_943439.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: vch:VC1554 glycerophosphoryl diester phosphodiesterase, putative
YP_943440.1	PFAM: extracellular solute-binding protein, family 1; KEGG: csa:Csal_2738 extracellular solute-binding protein, family 1
YP_943441.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0239 SN-glycerol-3-phosphate ABC transporter, permease protein
YP_943442.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PC00080 sn-glycerol-3-phosphate ABC transporter, permease protein
YP_943443.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: reu:Reut_A2049 ABC transporter related
YP_943444.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: ppr:PBPRB1003 hypothetical protein
YP_943445.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: vfi:VFA0624 aspartate racemase
YP_943446.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sec:SC2670 putative cytoplasmic protein
YP_943447.1	KEGG: vfi:VFA0020 hypothetical protein
YP_943448.1	KEGG: tdn:Tmden_0834 hypothetical protein
YP_943449.1	PFAM: CBS domain containing protein; EAL domain protein; KEGG: ilo:IL2293 signaling protein (EAL,CBS,GGDEF domains)
YP_943450.1	PFAM: UvrD/REP helicase; DNA topoisomerase, type IA, zn finger domain protein; KEGG: cps:CPS_2454 helicase IV
YP_943451.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rba:RB9586 probable oxidoreductase
YP_943452.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: vvu:VV21304 beta-glucosidase-related glycosidase
YP_943453.1	PFAM: putative thiol-disulphide oxidoreductase DCC; KEGG: son:SO0771 hypothetical protein
YP_943454.1	KEGG: cps:CPS_0516 oxidoreductase, short-chain dehydrogenase/reductase family
YP_943455.1	PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: pat:Patl_2349 hypothetical protein
YP_943456.1	KEGG: cps:CPS_4482 Bax domain protein
YP_943457.1	KEGG: cps:CPS_2270 hypothetical protein
YP_943460.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: pub:SAR11_0966 hypothetical oxidoreductase YiaK
YP_943461.1	PFAM: proline racemase; KEGG: atc:AGR_L_395 hypothetical protein
YP_943462.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pae:PA1269 probable transcriptional regulator
YP_943463.1	PFAM: isochorismatase hydrolase; KEGG: cps:CPS_3409 isochorismatase family protein
YP_943464.1	TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: ilo:IL1533 aconitase A
YP_943466.1	TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: pfl:PFL_0293 molybdopterin oxidoreductase, alpha subunit, putative
YP_943467.1	PFAM: formate dehydrogenase, subunit FdhD; KEGG: rxy:Rxyl_0145 formate dehydrogenase family accessory protein FdhD
YP_943468.1	KEGG: pcr:Pcryo_1811 hypothetical protein
YP_943469.1	KEGG: pcr:Pcryo_1812 hypothetical protein
YP_943470.1	PFAM: BCCT transporter; KEGG: pcr:Pcryo_1813 BCCT transporter
YP_943471.1	PFAM: peptidase M19, renal dipeptidase; KEGG: pcr:Pcryo_1814 peptidase M19, renal dipeptidase
YP_943472.1	PFAM: aldehyde dehydrogenase; KEGG: pcr:Pcryo_1815 aldehyde dehydrogenase
YP_943473.1	PFAM: Endoribonuclease L-PSP; KEGG: pcr:Pcryo_1816 Endoribonuclease L-PSP
YP_943474.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pcr:Pcryo_1817 transcriptional regulator, LysR family
YP_943475.1	PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2329 major facilitator superfamily MFS_1
YP_943476.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atc:AGR_L_1616 hypothetical protein
YP_943477.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0112 methyltransferase-related protein
YP_943480.1	KEGG: bfs:BF2833 hypothetical protein
YP_943481.1	PFAM: EAL domain protein; KEGG: pol:Bpro_2469 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain)
YP_943482.1	PFAM: response regulator receiver; KEGG: pol:Bpro_2469 response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain)
YP_943483.1	KEGG: pol:Bpro_2468 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_943484.1	KEGG: wsu:WS1744 alkyl hydroperoxide reductase
YP_943485.1	KEGG: syf:Synpcc7942_1656 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase
YP_943486.1	KEGG: pat:Patl_2584 hypothetical protein
YP_943487.1	PFAM: peptidase M6, immune inhibitor A; KEGG: sma:SAV1180 protease
YP_943491.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: vfi:VFA0117 transporter, drug/metabolite exporter family
YP_943492.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0218 diguanylate cyclase (GGDEF domain)
YP_943493.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_943494.1	PFAM: GTP-binding protein, HSR1-related; KEGG: ppr:PBPRA1571 hypothetical protein
YP_943495.1	KEGG: ppr:PBPRA1570 hypothetical protein
YP_943496.1	KEGG: vvy:VV2067 predicted signal transduction protein; TIGRFAM: PAS sensor protein; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_943497.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pat:Patl_0774 protein of unknown function DUF6, transmembrane
YP_943499.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_943500.1	PFAM: homocysteine S-methyltransferase; KEGG: pfo:Pfl_2779 homocysteine S-methyltransferase
YP_943501.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: xcb:XC_2820 glutathione S-transferase
YP_943502.1	SMART: Tetratricopeptide domain protein; KEGG: lipoprotein, putative
YP_943503.1	KEGG: psb:Psyr_0842 penicillin binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_943504.1	KEGG: hch:HCH_02452 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_943505.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0456 probable molybdenum ABC transporter, permease protein (ModB)
YP_943506.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: sde:Sde_2846 ABC-type molybdate transport system permease component-like
YP_943507.1	PFAM: molybdopterin biosynthesis MoaE; KEGG: sdn:Sden_0104 molybdopterin biosynthesis MoaE
YP_943508.1	PFAM: thiamineS protein; KEGG: stm:STM0805 molybdopterin biosynthesis protein
YP_943509.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: son:SO4451 molybdenum cofactor biosynthesis protein C
YP_943510.1	TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: vch:VC1025 molybdenum cofactor biosynthesis protein B
YP_943511.1	KEGG: xcv:XCV2084 hypothetical protein
YP_943512.1	PFAM: NapC/NirT cytochrome c domain protein; KEGG: vfi:VF1903 cytochrome c-type protein NapC
YP_943513.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ppr:PBPRA0854 putative periplasmic nitrate reductase,cytochrome c-type protein
YP_943514.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_943515.1	PFAM: NapD family protein; KEGG: vpa:VPA1198 NapD protein
YP_943516.1	TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: vpa:VPA1197 iron-sulfur cluster-binding protein NapF
YP_943517.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_943518.1	helicase involved in DNA repair and perhaps also replication
YP_943519.1	PFAM: protein of unknown function DUF81; KEGG: vfi:VF1008 hypothetical membrane spanning protein
YP_943520.1	KEGG: plu:plu3843 primosomal replication factor N''
YP_943521.1	KEGG: vfi:VF1006 hypothetical protein
YP_943522.1	PFAM: acylphosphatase; KEGG: vvy:VV1550 acylphosphatase
YP_943523.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: csa:Csal_1537 lysine exporter protein (LysE/YggA)
YP_943524.1	KEGG: pmu:PM0945 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia
YP_943525.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ppr:PBPRA1097 putative peptidyl-prolyl cis-trans isomerase B
YP_943526.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: stt:t2326 UDP-2,3-diacylglucosamine hydrolase
YP_943527.1	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3
YP_943528.1	affects solute and DNA transport through an unknown mechanism
YP_943529.1	PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family
YP_943530.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ppr:PBPRA0716 putative ferredoxin
YP_943531.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sdn:Sden_2374 MATE efflux family protein
YP_943532.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pat:Patl_3006 extracellular solute-binding protein, family 5
YP_943533.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plu:plu2588 peptide transport system permease protein SapB
YP_943534.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA2443 putative peptide ABC transporter, permease protein
YP_943535.1	KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_943536.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdn:Sden_2486 ABC transporter related
YP_943537.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pha:PSHAa1106 hypothetical protein
YP_943538.1	PFAM: PP-loop domain protein; KEGG: vch:VC1432 hypothetical protein
YP_943539.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_943540.1	PFAM: protein of unknown function UPF0005; KEGG: cps:CPS_2350 putative membrane protein
YP_943541.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: vfi:VFA0464 lipoprotein releasing system transmembrane protein LolE
YP_943542.1	KEGG: vch:VC1883 ABC transporter, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_943543.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ppr:PBPRA2390 putative ABC transporter integral membrane subunit
YP_943544.1	KEGG: pat:Patl_1725 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_943545.1	KEGG: vch:VC1887 hypothetical protein
YP_943546.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cps:CPS_2291 HAD-superfamily hydrolase, subfamily IA
YP_943547.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: hit:NTHI0536 ribosomal large subunit pseudouridine synthase C
YP_943548.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: son:SO2785 ribonuclease E
YP_943549.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfi:VF0902 thioredoxin reductase
YP_943550.1	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing
YP_943551.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_943552.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: vpa:VP0590 protein-export membrane protein SecD
YP_943553.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ppr:PBPRA0744 conserved hypothetical protein
YP_943554.1	KEGG: yps:YPTB0928 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_943555.1	TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: vfi:VF1970 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_943556.1	TIGRFAM: ribosomal protein L20; KEGG: vpa:VP1282 large subunit ribosomal protein L20
YP_943557.1	PFAM: ribosomal protein L35; KEGG: tcx:Tcr_1665 ribosomal protein L35
YP_943558.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: hin:HI1318m translation initiation factor IF-3
YP_943559.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase, SAD; KEGG: pha:PSHAa1396 threonyl-tRNA synthetase
YP_943560.1	PFAM: YebG family protein; KEGG: sdn:Sden_1719 YebG
YP_943561.1	PFAM: Paraquat-inducible protein A; KEGG: vfi:VF1276 paraquat-inducible protein A
YP_943562.1	PFAM: Paraquat-inducible protein A; KEGG: ppr:PBPRA1925 hypothetical uncharacterized paraquat-inducible protein A
YP_943563.1	PFAM: Mammalian cell entry related domain protein; KEGG: vfi:VF1275 paraquat-inducible protein B
YP_943564.1	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA
YP_943565.1	PFAM: protein of unknown function DUF218; KEGG: vvy:VV2302 hypothetical protein
YP_943566.1	KEGG: cac:CAC1955 hypothetical protein
YP_943567.1	Required for the synthesis of the thiazole moiety
YP_943568.1	PFAM: YaeQ family protein; KEGG: pat:Patl_3118 YaeQ
YP_943569.1	TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: hin:HI0987 3-isopropylmalate dehydrogenase
YP_943570.1	PFAM: protein of unknown function DUF34; KEGG: ppr:PBPRA1042 hypothetical protein
YP_943571.1	TIGRFAM: Lantibiotic regulatory protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: vpa:VP0570 histidine protein kinase PhoR
YP_943572.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ppr:PBPRA0721 putative DNA-binding response regulator PhoB
YP_943573.1	Required for efficient pilin antigenic variation
YP_943574.1	TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; KEGG: ppr:PBPRA1685 putative phosphoribosylglycinamide formyltransferase 2
YP_943575.1	KEGG: pae:PA3008 hypothetical protein
YP_943576.1	KEGG: vfi:VF0662 hypothetical protein
YP_943577.1	PFAM: protein of unknown function RIO1; KEGG: ppr:PBPRA1235 putative RIO1/ZK632.3/MJ0444 family protein
YP_943578.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: ppr:PBPRA0807 putative exodeoxyribonuclease, small subunit
YP_943579.1	PFAM: Polyprenyl synthetase; KEGG: vch:VC0890 geranyltranstransferase
YP_943580.1	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: vpa:VP0686 1-deoxyxylulose-5-phosphate synthase
YP_943581.1	KEGG: sgl:SG0654 thiamin-monophosphate kinase ThiL; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein
YP_943582.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cps:CPS_0916 RNA pseudouridine synthase family protein
YP_943583.1	KEGG: cps:CPS_3339 hypothetical protein
YP_943584.1	KEGG: vfi:VF0654 hypothetical protein
YP_943585.1	KEGG: abo:ABO_1396 hypothetical protein
YP_943586.1	KEGG: vfi:VFA0558 coproporphyrinogen III oxidase
YP_943587.1	KEGG: sde:Sde_3925 hypothetical protein
YP_943588.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vvy:VVA1157 lactoylglutathione lyase
YP_943589.1	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: ppr:PBPRA1051 putative succinyl-CoA synthase, alpha subunit
YP_943590.1	KEGG: ppr:PBPRA1050 putative succinyl-CoA synthase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein
YP_943591.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: vvy:VV1033 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide
YP_943592.1	KEGG: ppr:PBPRA1048 putative 2-oxoglutarate dehydrogenase, E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; Transketolase, central region
YP_943593.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pat:Patl_1798 succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_943594.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_943595.1	KEGG: vch:VC2090 succinate dehydrogenase, hydrophobic membrane anchor protein
YP_943596.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: vfi:VF0819 succinate dehydrogenase cytochrome b556 subunit
YP_943597.1	KEGG: son:SO1926 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_943598.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_943599.1	PFAM: CBS domain containing protein; KEGG: vpa:VP0958 inosine monophosphate dehydrogenase-related protein
YP_943600.1	KEGG: cps:CPS_3635 hypothetical protein
YP_943601.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_943602.1	KEGG: vvu:VV11810 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein
YP_943603.1	KEGG: cps:CPS_0598 putative lipoprotein
YP_943604.1	KEGG: abo:ABO_0071 hypothetical protein
YP_943605.1	PFAM: histidine triad (HIT) protein; KEGG: vch:VC1897 Hit family protein
YP_943606.1	KEGG: pat:Patl_3377 hypothetical protein
YP_943607.1	PFAM: 37kDa nucleoid-associated protein; KEGG: vvy:VV1167 nucleoid-associated protein
YP_943608.1	PFAM: protein of unknown function DUF1414; KEGG: pha:PSHAa1818 hypothetical protein
YP_943609.1	PFAM: sulfatase; KEGG: vch:VC2041 hypothetical protein
YP_943610.1	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
YP_943611.1	PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pha:PSHAa0508 hypothetical protein
YP_943612.1	KEGG: msu:MS1506 recombinational DNA repair protein; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Toprim sub domain protein
YP_943613.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein
YP_943614.1	KEGG: mth:MTH356 sensory transduction histidine kinase
YP_943616.1	PFAM: conserved hypothetical protein 103; KEGG: plu:plu3840 hypothetical protein
YP_943617.1	KEGG: ppr:PBPRA1017 hypothetical DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase
YP_943618.1	KEGG: vch:VC1053 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase
YP_943619.1	PFAM: dihydrouridine synthase, DuS; KEGG: cps:CPS_0906 NifR3/Smm1 family protein
YP_943620.1	KEGG: pat:Patl_1429 hypothetical protein
YP_943621.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VV1658 ABC-type transport system, ATPase component
YP_943622.1	PFAM: glutaredoxin 2; KEGG: son:SO1852 hypothetical protein
YP_943623.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_943624.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_06083 ABC-type sugar transport system, periplasmic component
YP_943625.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ppr:PBPRB1907 putative signal transduction histidine kinase
YP_943626.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hch:HCH_06085 response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
YP_943627.1	TIGRFAM: 2,4-diaminobutyrate 4-transaminase; PFAM: aminotransferase class-III; KEGG: ppr:PBPRA2230 putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase
YP_943628.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: ppr:PBPRA2230 putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase
YP_943629.1	PFAM: Saccharopine dehydrogenase; KEGG: ppr:PBPRA2229 putative saccharopine dehydrogenase
YP_943630.1	TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ppr:PBPRA2228 putative carboxynorspermidine decarboxylase
YP_943631.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cps:CPS_3923 sensory box/GGDEF domain protein
YP_943632.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ppr:PBPRB0795 putative threonine aldolase
YP_943633.1	PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: son:SO2100 thioredoxin family protein
YP_943634.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_943635.1	PFAM: PhnA protein-like; KEGG: abo:ABO_2381 PhnA protein
YP_943636.1	PFAM: methyltransferase small; Methyltransferase type 12; KEGG: pha:PSHAa2245 ribosomal RNA small subunit methyltransferase D
YP_943637.1	PFAM: sodium:neurotransmitter symporter; KEGG: ilo:IL1275 Na+-dependent transporter of the SNF family
YP_943638.1	KEGG: vpa:VP1599 hypothetical protein
YP_943639.1	PFAM: dihydroorotate dehydrogenase; KEGG: ppr:PBPRA1767 dihydroorotate dehydrogenase
YP_943640.1	KEGG: pcu:pc1824 hypothetical protein
YP_943641.1	PFAM: peptidase M22, glycoprotease; KEGG: pat:Patl_2808 peptidase M22, glycoprotease
YP_943642.1	SMART: helicase c2; KEGG: ppr:PBPRA1070 putative ATP-dependent helicase, DinG family
YP_943643.1	KEGG: vvy:VVA0912 hypothetical protein
YP_943645.1	KEGG: dar:Daro_1916 putative nucleotide-binding protein containing TIR-like domain
YP_943646.1	KEGG: rpd:RPD_2339 hypothetical protein
YP_943647.1	PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568
YP_943648.1	KEGG: noc:Noc_0226 PAS sensor diguanylate cyclase and phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_943649.1	PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12442 similar to hydrolase
YP_943650.1	PFAM: Peptidoglycan-binding domain 1 protein
YP_943651.1	KEGG: sdn:Sden_1783 hypothetical protein
YP_943652.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: pat:Patl_1434 ferredoxin-dependent glutamate synthase
YP_943653.1	PFAM: regulatory protein, MarR; KEGG: ppr:PBPRB1176 hypothetical transcriptional regulator, MarR family
YP_943654.1	PFAM: OsmC family protein; KEGG: ppr:PBPRB1177 putative organic hydroperoxide resistance protein
YP_943655.1	KEGG: csa:Csal_2382 hypothetical protein
YP_943656.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ccr:CC1117 transcriptional regulator, LysR family
YP_943657.1	KEGG: bte:BTH_II1774 serine protease, subtilase family
YP_943658.1	KEGG: tcx:Tcr_1766 hypothetical protein
YP_943659.1	KEGG: tcx:Tcr_1765 hypothetical protein
YP_943660.1	PFAM: Phosphoglycerate mutase; KEGG: tcx:Tcr_1764 phosphoglycerate/bisphosphoglycerate mutase
YP_943661.1	KEGG: tcx:Tcr_1769 HPr kinase
YP_943662.1	PFAM: RimK domain protein ATP-grasp; KEGG: tcx:Tcr_1768 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase)-like
YP_943663.1	KEGG: tcx:Tcr_1767 hypothetical protein
YP_943665.1	PFAM: beta-Ig-H3/fasciclin; KEGG: rde:RD1_0722 hypothetical protein
YP_943666.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: syf:Synpcc7942_0390 chromate transporter
YP_943667.1	PFAM: sulfotransferase; KEGG: fra:Francci3_1774 sulfotransferase domain protein
YP_943669.1	KEGG: atc:AGR_L_17 hypothetical protein
YP_943670.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_1955 ABC transporter, transmembrane region
YP_943671.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3416 ABC transporter-related protein
YP_943673.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: tcx:Tcr_0029 sodium/sulphate symporter
YP_943674.1	KEGG: son:SO2181 hypothetical protein
YP_943675.1	KEGG: dps:DP1006 related to NAD-dependent DNA ligase; PFAM: BRCT domain protein; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like
YP_943676.1	TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: son:SO2897 cell division protein ZipA
YP_943677.1	PFAM: protein of unknown function DUF540; KEGG: eca:ECA0895 putative sulfate transporter
YP_943678.1	PFAM: response regulator receiver; KEGG: ppr:PBPRA1218 putative chemotaxis protein CheY
YP_943679.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: ppr:PBPRA1216 putative transporter
YP_943680.1	PFAM: response regulator receiver; KEGG: ppr:PBPRA1218 putative chemotaxis protein CheY
YP_943681.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: vfi:VF1052 transporter, divalent anion:sodium symporter family
YP_943682.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: stm:STM1057 aminopeptidase N
YP_943683.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: son:SO2116 acetyltransferase, GNAT family
YP_943684.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: vvy:VV1730 Na+-driven multidrug efflux pump
YP_943686.1	KEGG: ade:Adeh_0135 glycogen/starch synthase, ADP-glucose type; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein
YP_943687.1	KEGG: hch:HCH_06804 hypothetical protein
YP_943688.1	KEGG: aae:aq_922 hypothetical protein
YP_943689.1	PFAM: protein kinase; leucine-rich repeat protein; SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein, typical subtype; KEGG: ppr:PBPRA2167 hypothetical protein
YP_943690.1	KEGG: vch:VCA0343 hypothetical protein
YP_943691.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: dps:DP0307 probable cation-transporting ATPase
YP_943692.1	KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein
YP_943693.1	KEGG: tcx:Tcr_1934 hypothetical protein
YP_943695.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_943696.1	Represses the expression of the zwf, eda, glp and gap
YP_943697.1	PFAM: pyruvate kinase; KEGG: ppr:PBPRA2431 putative pyruvate kinase II
YP_943698.1	PFAM: protein of unknown function DUF1315; KEGG: ilo:IL1270 hypothetical protein
YP_943699.1	KEGG: pat:Patl_1637 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_943700.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_943701.1	KEGG: pat:Patl_1635 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77
YP_943702.1	PFAM: Aldose 1-epimerase; KEGG: vfi:VF0912 aldose 1-epimerase-like protein
YP_943703.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: ppr:PBPRA2602 putative glyceraldehyde 3-phosphate dehydrogenase
YP_943704.1	PFAM: transglutaminase domain protein; KEGG: psb:Psyr_2055 transglutaminase-like
YP_943705.1	PFAM: protein of unknown function DUF58; KEGG: sdn:Sden_2349 protein of unknown function DUF58
YP_943706.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sdn:Sden_2348 ATPase associated with various cellular activities, AAA_3
YP_943707.1	KEGG: vch:VCA0432 hypothetical protein
YP_943708.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_943709.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_943710.1	PFAM: TENA/THI-4 domain protein; KEGG: vpa:VPA0132 putative transcriptional activator
YP_943711.1	KEGG: vpa:VPA0133 putative ABC transporter substrate-binding protein
YP_943712.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA0134 ABC transporter permease protein
YP_943713.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0135 putative ABC transporter, ATP-binding protein
YP_943714.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_943715.1	PFAM: regulatory protein, LysR; KEGG: vfi:VF2051 transcriptional regulators, LysR family
YP_943716.1	KEGG: ppr:PBPRB0712 hypothetical transcriptional regulator
YP_943717.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: eba:ebA583 exo-alpha-1,4-glucosidase
YP_943718.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_943719.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: ppr:PBPRB0410 putative glycosidase
YP_943720.1	KEGG: vvy:VV1848 hypothetical protein
YP_943722.1	KEGG: ana:all4929 unknown protein
YP_943723.1	PFAM: transposase IS3/IS911 family protein; KEGG: cps:CPS_2959 ISCps3, transposase orfA
YP_943724.1	KEGG: vfi:VF0417 hypothetical protein
YP_943725.1	PFAM: GTP-binding protein, HSR1-related; KEGG: cps:CPS_2456 putative GTP-binding protein HflX
YP_943726.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2279 MotA/TolQ/ExbB proton channel
YP_943727.1	TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; GLUG domain protein; KEGG: dps:DP1520 hypothetical protein
YP_943728.1	PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: cvi:CV1468 probable activation/secretion signal peptide protein
YP_943729.1	KEGG: vpa:VP3011 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_943730.1	PFAM: protein of unknown function DUF81; KEGG: mlo:mll3907 putative integral membrane protein
YP_943731.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ppr:PBPRB0478 putative aldehyde dehydrogenase
YP_943732.1	KEGG: chy:CHY_1355 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_943733.1	KEGG: cps:CPS_3437 hypothetical protein
YP_943734.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: ilo:IL0315 predicted NADP-dependent oxidoreductases
YP_943735.1	PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein
YP_943736.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: hch:HCH_00754 phosphate transport system regulatory protein PhoU
YP_943737.1	KEGG: sde:Sde_3752 putative phosphate ABC transporter, ATP-binding protein (PstB); TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_943738.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1882 probable phosphate ABC transporter, permease protein (PstA)
YP_943739.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein
YP_943740.1	KEGG: dps:DP1881 related to phosphate ABC transporter, periplasmic binding protein
YP_943741.1	KEGG: ppr:PBPRB0316 hypothetical protein
YP_943742.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: pfl:PFL_4395 EAL domain/GGDEF domain protein
YP_943743.1	KEGG: pat:Patl_1752 hypothetical protein
YP_943744.1	PFAM: Ppx/GppA phosphatase; KEGG: vpa:VP0572 exopolyphosphatase
YP_943745.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_943747.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psb:Psyr_2268 regulatory protein, LysR:LysR, substrate-binding
YP_943748.1	PFAM: Amidase; KEGG: rpa:RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit A
YP_943749.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rpa:RPA1473 possible peptide transport system substrate-binding protein
YP_943750.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4050 binding-protein-dependent transport systems inner membrane component
YP_943751.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease)
YP_943752.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bja:blr3340 ABC transporter ATP-binding protein
YP_943753.1	KEGG: msu:MS2305 hypothetical protein
YP_943754.1	KEGG: pat:Patl_2051 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_943755.1	PFAM: aminotransferase, class V; KEGG: pat:Patl_2052 aminotransferase, class V
YP_943756.1	PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative
YP_943757.1	PFAM: Amidase; KEGG: pat:Patl_2055 amidase
YP_943758.1	PFAM: Bile acid:sodium symporter; KEGG: transporter, putative
YP_943759.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_2057 transcriptional regulator, RpiR family
YP_943760.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yps:YPTB0869 putative amino acid ABC transporter, ATP-binding protein
YP_943761.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3493 putative amino acid ABC transporter, permease protein
YP_943762.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB0867 putative amino acid ABC transporter, permease protein
YP_943763.1	PFAM: extracellular solute-binding protein, family 3; KEGG: ypn:YPN_0839 amino acid ABC transporter, periplasmic protein
YP_943764.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: sfr:Sfri_3644 protein of unknown function DUF6, transmembrane
YP_943765.1	TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; KEGG: jan:Jann_1394 HAD-superfamily subfamily IIA hydrolase, hypothetical 3
YP_943766.1	KEGG: cps:CPS_2014 exodeoxyribonuclease I; PFAM: Exonuclease, RNase T and DNA polymerase III; Exonuclease C-terminal domain protein; SMART: Exonuclease
YP_943768.1	TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: sdn:Sden_2520 cysteine synthase A
YP_943769.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: plu:plu1394 phosphocarrier protein HPr (histidine-containing protein)
YP_943770.1	Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system
YP_943771.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_943772.1	PFAM: arsenate reductase and related; KEGG: vfi:VF1913 arsenate reductase
YP_943773.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_943774.1	PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: ppr:PBPRA0843 putative D,D-carboxypeptidase-related protein
YP_943775.1	PFAM: type IV pilus assembly PilZ; KEGG: son:SO1227 hypothetical protein
YP_943776.1	KEGG: vfi:VF0509 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3
YP_943777.1	KEGG: vpa:VP2432 putative smp protein
YP_943778.1	PFAM: manganese and iron superoxide dismutase; KEGG: pat:Patl_1395 superoxide dismutase
YP_943779.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: vpa:VP2117 putative glutaredoxin protein
YP_943780.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_943781.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: yps:YPTB1220 hypothetical protein
YP_943782.1	PFAM: protein of unknown function DUF1043; KEGG: cje:Cj1433c hypothetical protein
YP_943783.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_943784.1	KEGG: sde:Sde_0594 hypothetical protein
YP_943785.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: tdn:Tmden_1156 phospholipase D/transphosphatidylase
YP_943786.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: tdn:Tmden_1157 endonuclease/exonuclease/phosphatase
YP_943787.1	PFAM: peptidase M14, carboxypeptidase A; Fibronectin, type III domain protein; KEGG: ppr:PBPRB0708 hypothetical protein
YP_943788.1	PFAM: RimK domain protein ATP-grasp; KEGG: ppr:PBPRB0709 hypothetical protein
YP_943789.1	PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: ppr:PBPRB0710 hypothetical protein
YP_943790.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ppr:PBPRB0711 hypothetical carboxypeptidase G2
YP_943791.1	decatenates replicating daughter chromosomes
YP_943792.1	KEGG: dps:DP0123 hypothetical protein
YP_943793.1	PFAM: phage integrase family protein; KEGG: cps:CPS_2917 site-specific recombinase, phage integrase family
YP_943794.1	KEGG: vvy:VV0817 phage integrase
YP_943795.1	KEGG: vvy:VV2215 hypothetical protein
YP_943798.1	KEGG: ppr:PBPRA0980 hypothetical transposase
YP_943800.1	KEGG: hch:HCH_06523 GDSL-lilke lipase/acylhydrolase family protein
YP_943805.1	PFAM: metallophosphoesterase; ADP-ribosylation/Crystallin J1; KEGG: hch:HCH_07000 ADP-ribosylglycohydrolase
YP_943806.1	KEGG: pha:PSHAa2990 hypothetical protein
YP_943807.1	KEGG: ypk:y3088 hypothetical protein
YP_943808.1	KEGG: rfr:Rfer_1360 hypothetical protein
YP_943809.1	KEGG: sgl:SG0738 hypothetical protein
YP_943810.1	PFAM: Prophage CP4-57 regulatory; KEGG: sde:Sde_2745 putative transcriptional regulator
YP_943812.1	KEGG: ecs:ECs1219 putative small subunit terminase
YP_943813.1	PFAM: type III restriction enzyme, res subunit; KEGG: bbr:BB0913 type III restriction enzyme
YP_943814.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_01825 type III restriction-modification system methylation subunit
YP_943815.1	KEGG: ecc:c5377 hypothetical protein
YP_943816.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: sat:SYN_01827 SNF2-related:helicase, C-terminal:type III restriction enzyme
YP_943817.1	KEGG: ecs:ECs2908 hypothetical protein
YP_943818.1	TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: vfi:VF0205 60 kDa chaperonin GROEL
YP_943819.1	PFAM: chaperonin Cpn10; KEGG: cps:CPS_0956 chaperone protein GroES
YP_943821.1	PFAM: phage integrase family protein; KEGG: vvy:VV0817 phage integrase
YP_943822.1	KEGG: hch:HCH_06093 hypothetical protein
YP_943823.1	PFAM: heat shock protein DnaJ domain protein; KEGG: hch:HCH_06092 DnaJ-class molecular chaperone
YP_943824.1	KEGG: pat:Patl_1217 hypothetical protein
YP_943825.1	PFAM: CheB methylesterase; KEGG: rfr:Rfer_2357 CheB methylesterase
YP_943826.1	catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose
YP_943827.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vpa:VP2396 LacI-family regulatory protein
YP_943828.1	KEGG: vpa:VP2395 hypothetical protein
YP_943829.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0750 binding-protein-dependent transport systems inner membrane component
YP_943830.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0749 binding-protein-dependent transport systems inner membrane component
YP_943831.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sal:Sala_0748 extracellular solute-binding protein, family 1
YP_943832.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: eca:ECA0851 putative sugar ABC transporter ATP-binding protein
YP_943833.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: sfx:S3258 putative oxidoreductase
YP_943834.1	SMART: von Willebrand factor, type A; KEGG: ppr:PBPRB0630 hypothetical protein
YP_943835.1	PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: ppr:PBPRB0631 hypothetical protein
YP_943836.1	KEGG: ppr:PBPRB0632 hypothetical protein
YP_943838.1	KEGG: ppr:PBPRB0633 hypothetical protein
YP_943839.1	KEGG: cps:CPS_2918 hypothetical protein
YP_943842.1	PFAM: NERD domain protein; DNA topoisomerase, type IA, zn finger domain protein; KEGG: sat:SYN_02043 hypothetical membrane protein
YP_943843.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vch:VC0812 helicase-related protein
YP_943844.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1409 hypothetical protein
YP_943847.1	KEGG: sdn:Sden_2317 hypothetical protein
YP_943848.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: sdn:Sden_0294 filamentation induced by cAMP protein Fic
YP_943849.1	PFAM: glycoside hydrolase, family 31; glycoside hydrolase, starch-binding; KEGG: ppr:PBPRB0321 hypothetical protein
YP_943850.1	PFAM: protein of unknown function DUF1568; KEGG: ana:alr4734 hypothetical protein
YP_943851.1	KEGG: cps:CPS_0522 hypothetical protein
YP_943852.1	KEGG: cps:CPS_0522 hypothetical protein
YP_943853.1	KEGG: mag:amb3628 hypothetical protein
YP_943854.1	Involved in ubiquinone biosynthesis
YP_943855.1	PFAM: ferrochelatase; KEGG: pha:PSHAb0112 ferrochelatase
YP_943856.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cps:CPS_1932 DNA-binding response regulator
YP_943857.1	KEGG: cps:CPS_1882 sensory box sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_943858.1	PFAM: domain of unknown function DUF1745; KEGG: cps:CPS_1883 hypothetical protein
YP_943859.1	PFAM: aldehyde dehydrogenase; KEGG: cps:CPS_1885 aldehyde dehydrogenase family protein
YP_943860.1	catalyzes the formation of L-proline from L-ornithine
YP_943861.1	TIGRFAM: acetoin reductases; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ilo:IL0792 acetoin(diacetyl) reductase
YP_943862.1	KEGG: rde:RD1_3706 monooxygenase protein, putative
YP_943863.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_943864.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tdn:Tmden_1449 methyltransferase, putative
YP_943865.1	PFAM: peptidase M24; KEGG: son:SO1388 aminopeptidase P, putative
YP_943866.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: vfi:VFA0029 transcriptional regulator, AraC family
YP_943867.1	PFAM: major facilitator superfamily MFS_1; KEGG: vvu:VV21453 permease of the major facilitator superfamily
YP_943869.1	KEGG: rfr:Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold domain protein; SMART: PAS domain containing protein
YP_943870.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s)
YP_943871.1	KEGG: pol:Bpro_5346 hypothetical protein
YP_943872.1	KEGG: dre:562943 similar to Early endosome antigen 1 (Endosome-associated protein p162) (Zinc finger FYVE domain containing protein 2)
YP_943873.1	SMART: helix-turn-helix domain protein; KEGG: ppr:PBPRA1807 putative transcriptional regulator
YP_943874.1	KEGG: ppr:PBPRA1806 hypothetical protein
YP_943875.1	KEGG: vvy:VV0144 hypothetical protein
YP_943879.1	KEGG: ppr:PBPRA0878 hypothetical protein
YP_943880.1	KEGG: rso:RSc3188 putative hemagglutinin-related protein
YP_943881.1	KEGG: nmu:Nmul_B2806 hypothetical protein
YP_943882.1	KEGG: rsp:RSP_3757 hypothetical protein
YP_943883.1	KEGG: bfr:BF1151 hypothetical protein
YP_943884.1	SMART: PKD domain containing protein; KEGG: son:SOA0110 lipoprotein, putative
YP_943887.1	PFAM: nuclease (SNase domain protein); KEGG: hch:HCH_01990 micrococcal nuclease-like protein
YP_943888.1	KEGG: cps:CPS_1634 hypothetical protein
YP_943889.1	PFAM: phage integrase family protein; KEGG: cps:CPS_2062 site-specific recombinase, phage integrase family
YP_943890.1	KEGG: pfl:PFL_3832 hypothetical protein
YP_943892.1	KEGG: bat:BAS0872 tellurium resistance protein, putative
YP_943893.1	KEGG: ecs:ECs1344 hypothetical protein
YP_943894.1	KEGG: aci:ACIAD1952 tellurium resistance protein
YP_943895.1	PFAM: stress protein; KEGG: eba:p1B315 protein involved in tellurite resistance
YP_943896.1	PFAM: membrane-flanked domain; KEGG: plt:Plut_0824 hypothetical protein
YP_943899.1	PFAM: Radical SAM domain protein; KEGG: vvu:VV20908 molybdenum cofactor biosynthesis enzyme
YP_943900.1	PFAM: Endonuclease I; KEGG: ppr:PBPRC0029 putative endonuclease I
YP_943903.1	KEGG: hypothetical protein
YP_943904.1	PFAM: phage integrase family protein; KEGG: rme:Rmet_2172 phage integrase
YP_943905.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: ppr:PBPRB1407 metallo-beta-lactamase family protein
YP_943906.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4292 phosphate ABC transporter, periplasmic phosphate-binding protein
YP_943907.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: son:SO4292 phosphate ABC transporter, periplasmic phosphate-binding protein
YP_943908.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4291 phosphate ABC transporter, permease protein
YP_943909.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: son:SO4290 phosphate ABC transporter, permease protein
YP_943910.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_943911.1	PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: cps:CPS_0605 hypothetical protein
YP_943912.1	KEGG: cps:CPS_0604 hypothetical protein
YP_943913.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: pat:Patl_0934 TRAP transporter solute receptor, TAXI family
YP_943914.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0933 TRAP transporter, 4TM/12TM fusion protein
YP_943915.1	KEGG: pca:Pcar_2588 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV
YP_943916.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: tpa:TP0988 hypothetical protein
YP_943917.1	PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family
YP_943918.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: cps:CPS_0506 putative sucrose phosphorylase
YP_943919.1	KEGG: cps:CPS_0507 hypothetical protein
YP_943920.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_943921.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mbo:Mb0897 probable acyl-CoA dehydrogenase FadE10
YP_943922.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bba:Bd1836 fatty oxidation complex, alpha subunit
YP_943923.1	KEGG: bba:Bd1835 acetyl-CoA acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_943924.1	PFAM: AMP-dependent synthetase and ligase; KEGG: plt:Plut_0972 long-chain fatty-acid-CoA ligase
YP_943925.1	PFAM: nitroreductase; KEGG: csa:Csal_0202 nitroreductase
YP_943926.1	PFAM: phospholipase/Carboxylesterase; KEGG: hch:HCH_01605 predicted esterase
YP_943927.1	KEGG: son:SO1372 hypothetical protein
YP_943928.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_943929.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_943930.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_943931.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_943932.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_943933.1	PFAM: ribosomal protein L17; KEGG: pmu:PM1389 50S ribosomal protein L17
YP_943934.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_2980 ABC transporter, ATP-binding/permease protein
YP_943935.1	KEGG: cte:CT1834 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_943936.1	PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1597 multidrug transporter, putative
YP_943937.1	PFAM: AMMECR1 domain protein; KEGG: lpf:lpl1177 hypothetical protein
YP_943938.1	PFAM: protein of unknown function DUF52; KEGG: hch:HCH_05946 predicted dioxygenase
YP_943939.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: vfi:VF1108 chaperone protein DnaJ
YP_943940.1	PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: vpa:VPA1470 hypothetical protein
YP_943941.1	KEGG: sdn:Sden_2824 major outer membrane lipoprotein, putative
YP_943942.1	KEGG: pha:PSHAa1594 hypothetical protein
YP_943943.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pat:Patl_2263 sodium/hydrogen exchanger
YP_943944.1	PFAM: Alkaline phosphatase; KEGG: hch:HCH_05826 alkaline phosphatase
YP_943945.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: son:SO4715 hypothetical protein
YP_943946.1	PFAM: regulatory protein RecX; KEGG: sdn:Sden_0902 regulatory protein RecX
YP_943947.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_943948.1	KEGG: tcx:Tcr_2034 lipase-like
YP_943949.1	KEGG: ppr:PBPRB0428 hypothetical protein
YP_943950.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ppr:PBPRB1771 putative thioredoxin 2
YP_943951.1	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: mxa:MXAN_2232 pirin family protein
YP_943952.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_943953.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppr:PBPRB0483 hypothetical protein
YP_943954.1	KEGG: ppr:PBPRA2669 hypothetical DnaJ domain protein
YP_943955.1	KEGG: cac:CAC1583 predicted P-loop ATPase
YP_943956.1	PFAM: phage Tail Collar domain protein; KEGG: sde:Sde_3326 forkhead-associated
YP_943957.1	PFAM: phage Tail Collar domain protein; KEGG: sit:TM1040_3287 phage tail collar
YP_943959.1	KEGG: ppr:PBPRB1420 hypothetical protein
YP_943960.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pat:Patl_1245 phospholipid/glycerol acyltransferase
YP_943961.1	PFAM: Endoribonuclease L-PSP; KEGG: vfi:VFA0002 translation initiation inhibitor
YP_943962.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_3391 membrane protein
YP_943963.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF0317 acetyltransferase
YP_943964.1	PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: cps:CPS_4896 hypothetical protein
YP_943965.1	KEGG: sdn:Sden_0766 ammonium transporter; TIGRFAM: PAS sensor protein; diguanylate cyclase; ammonium transporter; PFAM: GGDEF domain containing protein; EAL domain protein; Rh family protein/ammonium transporter; PAS fold domain protein; SMART: PAS domain containing protein
YP_943966.1	PFAM: Integrase, catalytic region; KEGG: plu:plu3016 transposase, IS30 family
YP_943967.1	KEGG: lpn:lpg2950 hypothetical protein
YP_943968.1	PFAM: lipopolysaccharide biosynthesis; KEGG: sat:SYN_03766 hypothetical membrane protein
YP_943970.1	PFAM: asparagine synthase; KEGG: mlo:mll5256 similar to asparagine synthetase
YP_943971.1	KEGG: hch:HCH_01195 hypothetical protein
YP_943972.1	SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cya:CYA_2538 oxidoreductase, 2OG-Fe(II) oxygenase family
YP_943973.1	KEGG: cpe:CPE0468 hypothetical protein
YP_943974.1	KEGG: cpe:CPE0467 hypothetical protein
YP_943975.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5254 ABC transporter, ATP-binding protein
YP_943976.1	KEGG: hch:HCH_01194 hypothetical protein
YP_943977.1	KEGG: ppr:PBPRB1247 hypothetical transposase
YP_943978.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; KEGG: sru:SRU_0347 oxidoreductase family, NAD-binding Rossmann fold domain protein
YP_943979.1	PFAM: aldo/keto reductase; KEGG: sme:SMc01702 putative oxidoreductase protein
YP_943980.1	PFAM: aldo/keto reductase; KEGG: sde:Sde_1479 putative oxidoreducatse
YP_943981.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: vfi:VFA0053 transcriptional regulators, LysR family
YP_943982.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: tte:TTE1213 cation transport ATPase
YP_943983.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: sde:Sde_2941 glutamine amidotransferase related enzyme
YP_943984.1	KEGG: dde:Dde_1621 hypothetical protein
YP_943985.1	PFAM: protein of unknown function DUF1348; KEGG: sde:Sde_2823 response regulator receiver domain protein (CheY-like)
YP_943986.1	PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; Male sterility C-terminal domain; KEGG: pat:Patl_1875 NAD-dependent epimerase/dehydratase
YP_943987.1	KEGG: tdn:Tmden_0421 transporter, putative
YP_943988.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_B0250 putative acetyltransferase, GnaT family
YP_943989.1	KEGG: noc:Noc_0468 hypothetical protein
YP_943991.1	PFAM: protein of unknown function DUF331; KEGG: pha:PSHAb0114 hypothetical protein
YP_943992.1	KEGG: cps:CPS_2997 hypothetical protein
YP_943993.1	catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis
YP_943994.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC01910 DNA repair helicase rad25
YP_943995.1	PFAM: NUDIX hydrolase; KEGG: dps:DP2521 related to 7,8-dihydro-8-oxoguanine-triphosphatase
YP_943996.1	PFAM: NERD domain protein; KEGG: neu:NE0846 hypothetical protein
YP_943998.1	KEGG: sth:STH1792 hypothetical protein
YP_944000.1	KEGG: pfa:PFD0320c-1 hypothetical protein
YP_944001.1	KEGG: bth:BT4603 hypothetical protein
YP_944002.1	PFAM: Heat shock protein 70; KEGG: bth:BT4602 chaperone protein DnaK
YP_944003.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vch:VC2621 extracellular nuclease-related protein
YP_944004.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_944005.1	PFAM: Auxin Efflux Carrier; KEGG: csa:Csal_3143 auxin efflux carrier
YP_944006.1	PFAM: histone deacetylase superfamily; KEGG: cps:CPS_1655 histone deacetylase family protein
YP_944007.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ppr:PBPRB0036 putative Cold shock-like protein
YP_944008.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_944009.1	KEGG: ppr:PBPRB1782 putative transposase
YP_944010.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA
YP_944011.1	KEGG: tcx:Tcr_1937 diguanylate cyclase (GGDEF domain); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: extracellular solute-binding protein, family 3
YP_944012.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdn:Sden_0759 HAD-superfamily hydrolase, subfamily IA, variant 1
YP_944013.1	PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sde:Sde_0733 putative serine protein kinase, PrkA
YP_944014.1	PFAM: protein of unknown function DUF444; KEGG: sde:Sde_0732 hypothetical protein
YP_944015.1	PFAM: SpoVR family protein; KEGG: pen:PSEEN0422 hypothetical protein
YP_944016.1	KEGG: rba:RB13110 probable diadenosine tetraphosphatase
YP_944017.1	KEGG: vch:VC1610 hypothetical protein
YP_944018.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRB1001 hypothetical protein
YP_944019.1	TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: pha:PSHAa2865 polyprenyltransferase
YP_944020.1	PFAM: cytochrome oxidase assembly; KEGG: pha:PSHAa2866 cytochrome oxidase assembly protein
YP_944021.1	KEGG: pha:PSHAa2867 transmembrane cytochrome oxidase associated protein
YP_944022.1	KEGG: pha:PSHAa2868 transmembrane cytochrome oxidase complex biogenesis factor
YP_944023.1	PFAM: cytochrome c oxidase, subunit III; KEGG: pha:PSHAa2869 cytochrome c oxidase subunit III
YP_944024.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_944025.1	PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2871 cytochrome c oxidase, subunit I
YP_944026.1	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: son:SO4606 cytochrome c oxidase, subunit II
YP_944027.1	KEGG: cps:CPS_1415 hypothetical protein
YP_944028.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase
YP_944029.1	PFAM: DSBA oxidoreductase; KEGG: ppr:PBPRB0337 hypothetical 2-hydroxychromene-2-carboxylateisomerase family protein
YP_944030.1	KEGG: ppr:PBPRA1961 hypothetical protein
YP_944031.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: cps:CPS_3106 4-phosphopantetheinyl transferase
YP_944032.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: cps:CPS_4627 serine protease, trypsin family
YP_944033.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_944034.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_944035.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: vvy:VVA0696 glycine cleavage system T protein
YP_944036.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: ppr:PBPRB1321 putative transcriptional regulator, HTH_3family
YP_944037.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_944038.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_944039.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_944041.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sfr:Sfri_1536 diguanylate cyclase
YP_944042.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: hch:HCH_04023 predicted Co/Zn/Cd cation transporters
YP_944043.1	PFAM: UspA domain protein; KEGG: eci:UTI89_C0610 universal stress protein UspG
YP_944044.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4662 substrate-binding transcriptional regulator, LysR family
YP_944045.1	in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution
YP_944046.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_944047.1	PFAM: sodium/hydrogen exchanger; KEGG: vvy:VV2961 putative Na+/H+ antiporter
YP_944048.1	KEGG: vpa:VPA0241 hypothetical protein
YP_944049.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: vvy:VVA0480 transcriptional regulator
YP_944050.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvu:VV21670 ABC-type Fe3+ transport system, permease component
YP_944051.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0238 ABC transporter, ATP-binding protein
YP_944052.1	PFAM: extracellular solute-binding protein, family 1; KEGG: vvu:VV21665 ABC-type Fe3+ transport system, periplasmic component
YP_944053.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_944054.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_944055.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_944056.1	PFAM: oxidoreductase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: son:SO2771 2-hydroxy-3-oxopropionate reductase
YP_944058.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_944059.1	TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: vpa:VP1709 DevB protein
YP_944060.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_944061.1	TIGRFAM: siroheme synthase; KEGG: cps:CPS_0537 siroheme synthase, N-terminal component
YP_944062.1	SMART: Water Stress and Hypersensitive response; KEGG: mxa:MXAN_6829 putative similar to late embryogenesis abundant proteins
YP_944064.1	PFAM: MgtE integral membrane region; MgtE intracellular region; KEGG: pha:PSHAa0712 magnesium transporter
YP_944065.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sdn:Sden_2309 regulatory protein, LysR
YP_944066.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: vpa:VP2082 acetate kinase
YP_944067.1	KEGG: ppr:PBPRB1752 hypothetical protein
YP_944068.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_944069.1	PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP0210 hypothetical protein
YP_944070.1	KEGG: sdn:Sden_2944 hypothetical protein
YP_944071.1	KEGG: ppr:PBPRB1356 hypothetical protein
YP_944072.1	PFAM: thioesterase superfamily protein; KEGG: cps:CPS_0440 thioesterase family protein
YP_944073.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ppr:PBPRA2113 hypothetical protein
YP_944074.1	KEGG: vvy:VV1412 ABC-type uncharacterized transport system, periplasmic component
YP_944075.1	KEGG: vpa:VP1195 putative ABC transporter, permease protein
YP_944076.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppr:PBPRA2116 putative ABC-type uncharacterized transport system ATPase component
YP_944077.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ppr:PBPRA2117 putative phosphatidylglycerophosphate synthase
YP_944078.1	PFAM: Syd family protein; KEGG: vvy:VV0888 SecY interacting protein Syd
YP_944079.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_944080.1	KEGG: vpa:VP0700 hypothetical protein
YP_944081.1	PFAM: conserved hypothetical protein 730; KEGG: vfi:VF0595 conserved hypothetical protein
YP_944082.1	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups
YP_944083.1	KEGG: neu:NE1575 hypothetical protein
YP_944084.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_0903 putative short chain oxidoreductase
YP_944085.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: jan:Jann_1720 dihydrolipoamide dehydrogenase
YP_944086.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: mag:amb2318 pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzyme
YP_944087.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cps:CPS_3057 glyoxalase family protein
YP_944088.1	PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: bms:BRA0032 acetoin dehydrogenase, alpha/beta subunit, putative
YP_944089.1	PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase
YP_944090.1	PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase
YP_944091.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rme:Rmet_1905 transcriptional regulator, LacI family
YP_944093.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK3228 ribose ABC transporter (ATP-binding protein)
YP_944094.1	PFAM: inner-membrane translocator; KEGG: gka:GK3227 ribose ABC transporter (permease)
YP_944095.1	PFAM: inner-membrane translocator; KEGG: bsu:BG10880 D-ribose transport system permease protein
YP_944096.1	KEGG: atc:AGR_L_2023 bifunctional carbohydrate binding and transport protein
YP_944097.1	TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: ilo:IL2280 chaperonin GroEL (HSP60 family)
YP_944098.1	KEGG: son:SO3733 hypothetical protein
YP_944099.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ppr:PBPRA0835 putative xanthine/uracil permease family protein
YP_944100.1	Involved in the metabolism of aromatic amino acids
YP_944101.1	PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ppr:PBPRA2314 putative FAD-dependent dehydrogenase
YP_944102.1	KEGG: pfa:PFE1325w hypothetical protein
YP_944103.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: vvu:VV20671 membrane protease subunit
YP_944104.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: vvu:VV20670 membrane protease subunit
YP_944105.1	PFAM: GCN5-related N-acetyltransferase; KEGG: vfi:VF1344 acetyltransferase
YP_944106.1	PFAM: major facilitator superfamily MFS_1; KEGG: vch:VC1618 multidrug resistance protein, putative
YP_944107.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_2850 substrate-binding transcriptional regulator, LysR family
YP_944108.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cvi:CV3107 probable two-component response regulator
YP_944109.1	KEGG: ath:At1g03030 phosphoribulokinase/uridine kinase family protein
YP_944110.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_4130 putative periplasmic ribose-binding protein of ABC transport system
YP_944111.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pmu:PM1380 hybrid histidine protein kinase-phosphate acceptor regulatory protein
YP_944112.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:bll5782 ABC transporter sugar-binding protein
YP_944113.1	PFAM: inner-membrane translocator; KEGG: mlo:mll3597 ribose ABC transporter, permease protein
YP_944114.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcn:Bcen_1063 ABC transporter related
YP_944115.1	TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sgl:SG1630 phosphohistidine phosphatase
YP_944117.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: ilo:IL0995 MoxR-like ATPase
YP_944118.1	PFAM: protein of unknown function DUF58; KEGG: pat:Patl_1661 protein of unknown function DUF58
YP_944119.1	KEGG: lpp:lpp2915 hypothetical protein
YP_944120.1	PFAM: von Willebrand factor, type A; KEGG: ppr:PBPRB1845 conserved hypothetical protein
YP_944121.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pat:Patl_1658 TPR repeat
YP_944122.1	KEGG: pha:PSHAa0960 hypothetical protein
YP_944123.1	SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_05807 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_944124.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF1533 general L-amino acid transport system permease protein AapQ
YP_944125.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_1132 amino acid ABC transporter, permease protein
YP_944126.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF1535 general L-amino acid transport ATP-binding protein AapP
YP_944127.1	SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_05807 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
YP_944128.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF1533 general L-amino acid transport system permease protein AapQ
YP_944129.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_1132 amino acid ABC transporter, permease protein
YP_944130.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VV1554 ABC-type polar amino acid transport system, ATPase component
YP_944131.1	PFAM: protein of unknown function DUF785; KEGG: sde:Sde_2034 transglutaminase-like
YP_944132.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sde:Sde_2033 hypothetical protein
YP_944133.1	TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; KEGG: sde:Sde_2032 ammonium transporter
YP_944134.1	PFAM: MscS Mechanosensitive ion channel; KEGG: cps:CPS_1934 mechanosensitive ion channel family protein
YP_944135.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: tcx:Tcr_0935 Mg2+ transporter protein, CorA-like
YP_944136.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF1585 histidine transport system permease protein HisM
YP_944137.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA2740 putative ABC-type arginine transport system, permease component
YP_944138.1	PFAM: extracellular solute-binding protein, family 3; KEGG: vch:VC1863 polar amino acid transport system substrate-binding protein
YP_944139.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvu:VV12101 ABC-type histidine transport system, ATPase component
YP_944140.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: cvi:CV0521 probable membrane protein
YP_944141.1	PFAM: protein of unknown function DUF548; KEGG: pha:PSHAa0362 hypothetical protein
YP_944142.1	PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase
YP_944143.1	PFAM: nuclease (SNase domain protein); KEGG: pen:PSEEN0326 nuclease, staphylococcal nuclease homologue
YP_944144.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ppr:PBPRB1493 hypothetical protein
YP_944145.1	PFAM: regulatory protein, LysR; KEGG: vvy:VVA1564 transcriptional regulator
YP_944146.1	PFAM: glycoside hydrolase, family 1; KEGG: eca:ECA1871 6-phospho-beta-glucosidase
YP_944148.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_4324 type I secretion membrane fusion protein, HlyD family
YP_944149.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4325 ABC transporter, ATP-binding/permease protein
YP_944150.1	PFAM: outer membrane efflux protein; KEGG: cps:CPS_4326 outer membrane efflux protein
YP_944151.1	PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4327 TPR domain protein
YP_944152.1	KEGG: cps:CPS_4328 cadherin domain protein
YP_944153.1	KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein
YP_944154.1	KEGG: dps:DP2105 hypothetical protein
YP_944155.1	KEGG: sdn:Sden_1914 hypothetical protein
YP_944156.1	PFAM: Cold-shock protein, DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: pat:Patl_2628 cold-shock DNA-binding domain protein
YP_944157.1	PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1
YP_944158.1	KEGG: pol:Bpro_5554 hypothetical protein
YP_944159.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: vfi:VF1342 phosphoribosylaminoimidazole carboxylase ATPase subunit
YP_944160.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: son:SO4640 antioxidant, AhpC/Tsa family
YP_944161.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_944162.1	KEGG: cps:CPS_2164 hypothetical protein
YP_944163.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_944164.1	KEGG: vpa:VPA0294 hypothetical protein
YP_944165.1	TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: plu:plu0519 unnamed protein product; similar to hypothetical transport protein, NupC family protein, YeiM of Escherichia coli
YP_944166.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_944167.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_944168.1	TIGRFAM: purine nucleoside phosphorylase; PFAM: purine and other phosphorylases, family 1; KEGG: son:SO1221 purine nucleoside phosphorylase
YP_944169.1	KEGG: vfi:VF0505 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; thymidine phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain
YP_944170.1	KEGG: ppr:PBPRA0653 hypothetical protein
YP_944171.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mhy:mhp225 cytidine deaminase
YP_944172.1	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway
YP_944173.1	KEGG: vch:VC2678 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_944174.1	PFAM: Stringent starvation protein B; KEGG: vfi:VF2215 stringent starvation protein B
YP_944175.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: eca:ECA0308 stringent starvation protein A
YP_944176.1	PFAM: cytochrome c1; KEGG: vfi:VF2217 cytochrome C1
YP_944177.1	PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: cps:CPS_4439 ubiquinol-cytochrome c reductase, cytochrome b
YP_944178.1	TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: son:SO0608 ubiquinol-cytochrome c reductase iron-sulfur subunit
YP_944179.1	PFAM: ribosomal protein S9; KEGG: sgl:SG0217 30S ribosomal protein S9
YP_944180.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_944181.1	PFAM: AFG1-family ATPase; KEGG: vfi:VF2223 ATPase
YP_944182.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_944183.1	TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: vvu:VV10604 protease DegS
YP_944184.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: vfi:VF0401 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_944185.1	PFAM: BolA family protein; KEGG: ppr:PBPRA3243 putative BolA/YrbA family protein, transcriptional regulator
YP_944187.1	PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein
YP_944188.1	PFAM: Mammalian cell entry related domain protein; KEGG: vvy:VV0457 ABC-type transport system, periplasmic component
YP_944189.1	PFAM: protein of unknown function DUF140; KEGG: ilo:IL0404 ABC-type transport system involved in resistance to organic solvents, permease component
YP_944190.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pha:PSHAa2544 transport protein (ABC superfamily, atp-binding)
YP_944191.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: vch:VC2524 putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
YP_944192.1	PFAM: protein of unknown function DUF1239; KEGG: ilo:IL0399 hypothetical protein
YP_944193.1	PFAM: OstA family protein; KEGG: sdy:SDY_3381 hypothetical protein
YP_944194.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO3960 ABC transporter, ATP-binding protein
YP_944195.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: ppr:PBPRA3255 putative sigma factor N RpoN
YP_944196.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: vfi:VF0385 nitrogen regulatory IIA protein
YP_944197.1	PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: ppr:PBPRA3258 conserved hypothetical protein
YP_944198.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: vch:VC2533 phosphocarrier protein NPr
YP_944199.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: ppr:PBPRA3260 putative magnesium transporter
YP_944200.1	PFAM: Uncharacterised conserved protein UCP006287; KEGG: sdn:Sden_2907 uncharacterised conserved protein UCP006287
YP_944201.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: vpa:VPA1348 putative transcriptional activator ToxR
YP_944202.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_944203.1	PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: ilo:IL1320 Zn-dependent protease with chaperone function
YP_944204.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ilo:IL1575 L-2-haloalkanoic acid dehalogenase, HAD superfamily
YP_944205.1	YghU; B2989; one of eight putative glutathione transferase proteins from E. coli
YP_944206.1	PFAM: regulatory protein, TetR; KEGG: vfi:VF1081 transcriptional regulator, TetR family
YP_944207.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sde:Sde_0707 hypothetical protein
YP_944208.1	PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: bca:BCE1571 flavohemoprotein
YP_944209.1	PFAM: protein of unknown function DUF302; KEGG: tcx:Tcr_2069 protein of unknown function DUF302
YP_944210.1	KEGG: sru:SRU_1982 hypothetical protein
YP_944211.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: btk:BT9727_3756 oligo-1,6-glucosidase
YP_944212.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: hch:HCH_04796 transcriptional regulator
YP_944213.1	PFAM: extracellular solute-binding protein, family 1; KEGG: sit:TM1040_3307 extracellular solute-binding protein, family 1
YP_944214.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03062 alpha-glucosides transport system permease ABC transporter protein
YP_944215.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03063 alpha-glucosides transport system permease ABC transporter protein
YP_944216.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc03065 alpha-glucosides transport ATP-binding ABC transporter protein
YP_944217.1	KEGG: ftf:FTF0660 hypothetical membrane protein
YP_944218.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vpa:VPA0878 hypothetical protein
YP_944219.1	KEGG: abo:ABO_1656 hypothetical protein
YP_944220.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ecp:ECP_1745 probable transporter transmembrane protein YeaS
YP_944221.1	KEGG: vvy:VVA1223 hypothetical protein
YP_944222.1	KEGG: ecp:ECP_2332 hypothetical protein YfbT (putative hydrolase)
YP_944223.1	KEGG: mhu:Mhun_1719 hypothetical protein
YP_944224.1	KEGG: eca:ECA2760 hypothetical protein
YP_944226.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_944227.1	KEGG: vvy:VV2772 pyruvate dehydrogenase, E2 component, dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_944228.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_944229.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: eca:ECA3790 pyruvate dehydrogenase complex repressor
YP_944230.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB3798 gluconate utilization system Gnt-I transcriptional repressor
YP_944231.1	KEGG: vfi:VF0090 2-dehydro-3-deoxyphosphogluconate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase
YP_944232.1	KEGG: vvy:VV0059 phosphogluconate dehydratase
YP_944233.1	KEGG: pha:PSHAb0480 putative D-gluconate kinase active at low temperature (idonate catabolism); TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase
YP_944234.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_03539 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_944235.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_03541 TRAP-type mannitol/chloroaromatic compound transport system, small permease component
YP_944236.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_03542 TRAP-type mannitol/chloroaromatic compound transport system, large permease component
YP_944237.1	KEGG: hch:HCH_03543 gluconate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase
YP_944238.1	KEGG: son:SO1902 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding
YP_944239.1	PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein
YP_944240.1	PFAM: Amidase; KEGG: pat:Patl_2055 amidase
YP_944241.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: ilo:IL0455 N-acetyl-anhydromuramyl-L-alanine amidase
YP_944242.1	KEGG: mlo:mlr4684 hypothetical protein
YP_944245.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: ana:alr4060 probable alginate O-acetylation protein
YP_944247.1	PFAM: phage integrase family protein; KEGG: mag:amb3688 integrase
YP_944249.1	PFAM: phage integrase family protein; KEGG: mag:amb2127 integrase
YP_944250.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_944251.1	KEGG: son:SO3293 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase
YP_944252.1	KEGG: vch:VC0766 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type
YP_944253.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_944254.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_944255.1	involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS
YP_944256.1	forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation
YP_944257.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pha:PSHAa2010 glutathione-regulated potassium-efflux system protein KefB
YP_944258.1	PFAM: protein of unknown function DUF214; KEGG: vfi:VFA1042 ABC transporter component, lysophospholipase L1 transport
YP_944259.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VFA1043 ABC transporter ATP-binding protein
YP_944260.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: vfi:VFA1044 acyl-CoA thioesterase I
YP_944261.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: plu:plu0689 putative cell cycle protein MesJ
YP_944262.1	KEGG: vpa:VP2303 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_944263.1	PFAM: ribonuclease HII/HIII; KEGG: vpa:VP2304 ribonuclease HII
YP_944264.1	KEGG: vvy:VV2544 lipid A disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19
YP_944265.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_944266.1	TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: vfi:VF1951 (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
YP_944267.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: ppr:PBPRA2958 putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_944268.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: vfi:VF1953 outer membrane protein OmpH
YP_944269.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: son:SO1637 bacterial surface antigen
YP_944270.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sdn:Sden_1561 peptidase M50, putative membrane-associated zinc metallopeptidase
YP_944271.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_944272.1	PFAM: phosphatidate cytidylyltransferase; KEGG: ppr:PBPRA2963 putative phosphatidate cytidylyltransferase
YP_944273.1	KEGG: cps:CPS_1557 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_944274.1	PFAM: ribosome recycling factor; KEGG: vpa:VP2315 ribosome recycling factor
YP_944275.1	TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: pat:Patl_1251 uridylate kinase
YP_944276.1	TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: pat:Patl_1250 translation elongation factor Ts
YP_944277.1	PFAM: ribosomal protein S2; KEGG: son:SO1629 30S ribosomal protein S2
YP_944278.1	KEGG: pen:PSEEN5223 hypothetical protein
YP_944282.1	KEGG: ppr:PBPRA1759 hypothetical protein
YP_944283.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: yps:YPTB0011 GntR-famly transcriptional regulator
YP_944285.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sde:Sde_2977 response regulator receiver domain protein (CheY-like)
YP_944286.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_1986 two-component sensor histidine kinase protein, putative
YP_944287.1	KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transport system, periplasmic component
YP_944288.1	PFAM: inner-membrane translocator; KEGG: abo:ABO_2510 branched-chain amino acid ABC transporter, permease protein
YP_944289.1	PFAM: inner-membrane translocator; KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease protein
YP_944290.1	PFAM: ABC transporter related; KEGG: psb:Psyr_4429 ABC transporter
YP_944291.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_2513 amino acid ABC transporter, ATP-binding protein
YP_944292.1	PFAM: Urease accessory protein UreD; KEGG: dar:Daro_1430 urease accessory protein UreD
YP_944293.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_944294.1	KEGG: pen:PSEEN2095 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit
YP_944295.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_944296.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_944297.1	PFAM: Urease accessory protein UreF; KEGG: aeh:Mlg_0186 urease accessory protein UreF
YP_944298.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: hch:HCH_04526 urease accessory protein UreG
YP_944299.1	PFAM: transposase IS200-family protein; KEGG: ppr:PBPRB1247 hypothetical transposase
YP_944300.1	KEGG: cvi:CV1389 hypothetical protein
YP_944301.1	KEGG: cvi:CV1388 hypothetical protein
YP_944302.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: rfr:Rfer_0627 metal dependent phosphohydrolase
YP_944303.1	catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_944304.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pha:PSHAa2037 methionine aminopeptidase; contains a divalent metal, usually cobalt
YP_944305.1	KEGG: ppr:PBPRA2970 putative protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region
YP_944306.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein
YP_944307.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2150 iron(III)-transport system permease protein SfuB
YP_944308.1	KEGG: vfi:VF2151 iron(III)-binding protein
YP_944309.1	PFAM: MaoC domain protein dehydratase; KEGG: ppr:PBPRB0808 hypothetical acyl dehydratase
YP_944310.1	KEGG: pha:PSHAa1429 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase
YP_944311.1	KEGG: vch:VC1912 hypothetical protein
YP_944312.1	PFAM: protein of unknown function DUF1049; KEGG: pmu:PM0799 hypothetical HI1222
YP_944313.1	TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: ppr:PBPRA2449 putative integration host factor, beta subunit
YP_944314.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_944315.1	KEGG: ssn:SSO_0912 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region
YP_944316.1	PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative
YP_944317.1	KEGG: vfi:VF1816 cytochrome c-type biogenesis protein CcmI
YP_944318.1	PFAM: cytochrome C biogenesis protein; KEGG: vvy:VV2448 putative cytochrome c-type biogenesis protein
YP_944319.1	TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: vch:VC2051 thiol:disulfide interchange protein DsbE
YP_944320.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ppr:PBPRA0952 putative cytochrome c-type biogenesis protein CcmF
YP_944321.1	PFAM: CcmE/CycJ protein; KEGG: ppr:PBPRA0951 putative cytochrome c-type biogenesis proteinCcmE
YP_944322.1	PFAM: Heme exporter protein D (CcmD); KEGG: vfi:VF1821 heme exporter protein D
YP_944323.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: vfi:VF1822 heme chaperone heme-lyase
YP_944324.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: ppr:PBPRA0949 putative heme exporter protein B
YP_944325.1	KEGG: vch:VC2057 heme exporter protein A; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase
YP_944326.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ppr:PBPRA3185 putative ammonium transporter
YP_944327.1	PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2905 nitrogen regulatory protein P-II
YP_944328.1	PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: vpa:VP0719 D-alanyl-D-alanine carboxypeptidase
YP_944329.1	PFAM: protein of unknown function DUF493; KEGG: son:SO1163 hypothetical protein
YP_944330.1	TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: vpa:VP0717 lipoate-protein ligase B
YP_944331.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_944332.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pha:PSHAa2700 D-cysteine desulfhydrase, PLP-dependent enzyme
YP_944333.1	PFAM: methyltransferase small; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; KEGG: vvy:VV2731 16S RNA G1207 methylase RsmC
YP_944334.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_944335.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_944336.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_944337.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: vch:VC0660 ATP-dependent RNA helicase SrmB
YP_944338.1	PFAM: protein of unknown function DUF328; KEGG: vch:VC2355 hypothetical protein
YP_944339.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili)
YP_944340.1	KEGG: cps:CPS_3662 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_944341.1	PFAM: alanine racemase domain protein; KEGG: vfi:VF0430 conserved hypothetical protein
YP_944342.1	KEGG: vpa:VP2617 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein
YP_944343.1	PFAM: protein of unknown function YGGT; KEGG: vvu:VV11523 predicted integral membrane protein
YP_944344.1	PFAM: protein of unknown function DUF167; KEGG: ppr:PBPRA3146 hypothetical protein
YP_944345.1	KEGG: vfi:VF0426 hypothetical protein
YP_944346.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: ppr:PBPRA3148 hypothetical Xanthosine triphosphate pyrophosphatase
YP_944347.1	KEGG: eci:UTI89_C3344 hypothetical protein YggW; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_944348.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: vfi:VFA0260 glutathione-regulated potassium-efflux system protein KefC
YP_944349.1	KEGG: sru:SRU_0809 hypothetical protein
YP_944350.1	PFAM: MscS Mechanosensitive ion channel; KEGG: sru:SRU_0808 transporter, small conductance mechanosensitive ion channel (MscS) family
YP_944351.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB8188 probable glyoxylate-induced protein
YP_944355.1	KEGG: pol:Bpro_5310 hypothetical protein
YP_944361.1	SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: bcn:Bcen_4235 helix-hairpin-helix DNA-binding, class 1
YP_944362.1	TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: sec:SC1223 Gifsy-1 prophage GlpA
YP_944363.1	KEGG: pen:PSEEN1459 hypothetical protein
YP_944365.1	KEGG: ssn:SSO_3248 outer membrane fimbrial user protein
YP_944366.1	KEGG: spo:SPAPB1E7.04c putative glucoamylase I (alpha-1,4-glucan glucosidase), extracellular starch-degrading enzyme; by similarity to S. cerevisiae STA1; contains chitinase family signature
YP_944368.1	KEGG: aba:Acid345_3295 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain
YP_944369.1	PFAM: protein of unknown function DUF167; KEGG: rfr:Rfer_0749 protein of unknown function DUF167
YP_944370.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: tdn:Tmden_0310 phospholipid/glycerol acyltransferase
YP_944371.1	KEGG: rsp:RSP_4199 putative DnaK suppressor protein
YP_944372.1	PFAM: globin; KEGG: pha:PSHAa2217 globin-like
YP_944374.1	KEGG: stm:STM2726 hypothetical protein
YP_944375.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE3 domain protein; KEGG: vfi:VFA0056 hypothetical protein
YP_944377.1	KEGG: pat:Patl_3792 hypothetical protein
YP_944378.1	KEGG: sru:SRU_0851 hypothetical protein
YP_944379.1	KEGG: rru:Rru_A2472 hypothetical protein
YP_944380.1	PFAM: tRNA-hydroxylase; KEGG: vpa:VP1099 tRNA-hydroxylase
YP_944381.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eba:ebA784 hypothetical protein
YP_944382.1	KEGG: abo:ABO_1996 hypothetical protein
YP_944383.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cps:CPS_4923 oxidoreductase, 2OG-Fe(II) oxygenase family
YP_944384.1	PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase
YP_944385.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mca:MCA0639 NADH-dependent flavin oxidoreductase, Oye family
YP_944386.1	PFAM: regulatory protein, TetR; KEGG: gme:Gmet_0803 transcriptional regulator, TetR family
YP_944387.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: rpb:RPB_0451 diguanylate cyclase/phosphodiesterase
YP_944388.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pha:PSHAa2207 carbohydrates permease
YP_944389.1	PFAM: protein of unknown function DUF1568; KEGG: sdn:Sden_3323 protein of unknown function DUF1568
YP_944390.1	PFAM: EAL domain protein; KEGG: pha:PSHAa2203 hypothetical protein
YP_944391.1	PFAM: BLUF domain protein; KEGG: lxx:Lxx04275 photopigment and puc expression activator
YP_944392.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_944393.1	PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_1598 twin-arginine translocation pathway signal
YP_944394.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_944396.1	KEGG: pgi:PG1130 TPR domain protein
YP_944401.1	KEGG: ava:Ava_3495 Tn7-like transposition protein D
YP_944402.1	KEGG: ava:Ava_3489 Tn7-like transposition protein D
YP_944403.1	KEGG: bca:BCE0176 Tn7-like transposition protein C
YP_944404.1	KEGG: ssn:SSO_3892 putative transposase
YP_944405.1	KEGG: pca:Pcar_2932 transposon Tn7 transposition protein TnsA
YP_944406.1	KEGG: dvu:DVU2177 hypothetical protein
YP_944408.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bca:BCE0855 DEAD/DEAH box helicase domain protein
YP_944409.1	KEGG: dps:DP2304 hypothetical protein
YP_944410.1	PFAM: beta-lactamase domain protein; KEGG: dps:DP2303 hypothetical protein
YP_944411.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: pat:Patl_0375 HI0933-like protein
YP_944412.1	PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; KEGG: vpa:VP2778 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_944413.1	PFAM: SlyX family protein; KEGG: hit:NTHI0706 SlyX
YP_944416.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: vch:VC0298 acetyl-coenzyme A synthetase
YP_944417.1	KEGG: vch:VC0297 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase, class II
YP_944418.1	KEGG: son:SO1717 hypothetical protein
YP_944419.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: vvy:VV2972 NifR3/Smm1 family protein
YP_944420.1	KEGG: sdn:Sden_0298 hypothetical protein
YP_944421.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cps:CPS_0377 ISCps1, transposase
YP_944422.1	PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type
YP_944423.1	KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_944424.1	PFAM: ferredoxin; KEGG: jan:Jann_3168 ferredoxin
YP_944425.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: vch:VC0075 MadN protein
YP_944426.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; a fusion protein of this enzyme with MsrB provides protection against oxidative stress in Neisseria gonorrhoeae
YP_944427.1	PFAM: protein of unknown function DUF462; KEGG: pat:Patl_3387 protein of unknown function DUF462
YP_944428.1	KEGG: pat:Patl_3385 hypothetical protein
YP_944429.1	KEGG: pat:Patl_1217 hypothetical protein
YP_944430.1	KEGG: dar:Daro_1362 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_944431.2	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_944432.1	PFAM: NUDIX hydrolase; KEGG: psp:PSPPH_4558 MutT domain protein-like
YP_944433.1	KEGG: hwa:HQ1719A hypothetical protein
YP_944434.1	KEGG: hwa:HQ1718A hypothetical protein
YP_944435.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vch:VC1275 hypothetical protein
YP_944436.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vvy:VV2108 hypothetical protein
YP_944437.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00415 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_944438.1	PFAM: Auxin Efflux Carrier; KEGG: cps:CPS_0767 auxin efflux carrier family protein
YP_944439.1	KEGG: bte:BTH_I0261 hypothetical protein
YP_944440.1	KEGG: vch:VCA0027 chitinase
YP_944441.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tcx:Tcr_0888 short-chain dehydrogenase/reductase SDR
YP_944443.1	PFAM: DSBA oxidoreductase; KEGG: vvu:VV11036 thiol-disulfide isomerase and thioredoxins
YP_944444.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: noc:Noc_2773 ABC transporter, ATPase subunit
YP_944445.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0704 oligopeptide ABC transporter, permease protein
YP_944446.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0705 oligopeptide ABC transporter, permease protein
YP_944447.1	PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO0706 oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
YP_944448.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pae:PA1143 hypothetical protein
YP_944449.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: vpa:VPA0353 hypothetical protein
YP_944450.1	KEGG: eba:ebA1004 probable di-heme cytochrome c
YP_944453.1	KEGG: vfi:VFA0235 glycerol uptake facilitator protein
YP_944455.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_944456.1	PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_06973 ABC-type sugar transport system, periplasmic component
YP_944457.1	KEGG: csa:Csal_2090 hypothetical protein
YP_944458.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3632 binding-protein-dependent transport systems inner membrane component
YP_944459.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pfo:Pfl_3633 binding-protein-dependent transport systems inner membrane component
YP_944460.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06968 ABC-type sugar transport system, ATPase components
YP_944461.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06967 ABC-type sugar transport system, ATPase components
YP_944462.1	PFAM: sigma-54 factor, interaction domain-containing protein; GAF domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_3636 sigma-54 specific transcriptional regulator containing GAF, and fis DNA-binding domains
YP_944463.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: vfi:VFA0238 glycerol-3-phosphate regulon repressor
YP_944464.1	hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic
YP_944465.1	KEGG: noc:Noc_0594 metallophosphoesterase
YP_944466.1	PFAM: ferric-uptake regulator; KEGG: cps:CPS_0412 zinc uptake regulation protein
YP_944467.1	KEGG: pub:SAR11_0935 peptidase M50
YP_944468.1	KEGG: pen:PSEEN0739 hypothetical protein
YP_944469.1	similar to RTX toxin; TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: cch:Cag_1242 VCBS
YP_944470.1	KEGG: pub:SAR11_0933 AcrA-like protein
YP_944471.1	PFAM: outer membrane efflux protein; KEGG: pen:PSEEN0747 efflux outer membrane protein
YP_944472.1	KEGG: vfi:VF0074 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2
YP_944473.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: vch:VCA0921 hypothetical protein
YP_944474.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin
YP_944475.1	TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: pha:PSHAa0105 3-octaprenyl-4-hydroxybenzoate carboxylyase
YP_944476.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_944477.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ppr:PBPRA3541 putative thioredoxin
YP_944478.1	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
YP_944479.1	PFAM: Ppx/GppA phosphatase; KEGG: vpa:VP3003 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
YP_944480.1	KEGG: vvy:VV3211 transposase and inactivated derivative
YP_944481.1	KEGG: ppr:PBPRB1782 putative transposase
YP_944482.1	PFAM: protein of unknown function DUF1255; KEGG: abo:ABO_2626 hypothetical protein
YP_944483.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VP2788 ABC transporter, ATP-binding protein
YP_944484.1	KEGG: pat:Patl_0111 hypothetical protein
YP_944485.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pat:Patl_3161 peptidylprolyl isomerase, FKBP-type
YP_944486.1	TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: vvu:VV10862 biotin biosynthesis protein BioH
YP_944487.1	KEGG: vvu:VV10863 predicted amidophosphoribosyltransferase
YP_944488.1	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source
YP_944489.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sde:Sde_3034 ATP-dependent RNA helicase DeaD
YP_944490.1	KEGG: vfi:VF2562 glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase
YP_944491.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_944492.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_944493.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: son:SO0053 glycerol-3-phosphate dehydrogenase (NAD(P)+)
YP_944494.1	TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: sdn:Sden_3696 protein-export protein SecB
YP_944495.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: abo:ABO_2273 glutaredoxin, putative
YP_944496.1	PFAM: Rhodanese domain protein; KEGG: eca:ECA0171 putative rhodanese-related sulfurtransferase
YP_944497.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_944498.1	PFAM: peptidase M23B; KEGG: son:SO0048 peptidase, M23/M37 family
YP_944499.1	KEGG: plu:plu4099 hypothetical protein
YP_944500.1	TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_3436 methylase for 50S ribosomal subunit protein L11
YP_944501.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pha:PSHAa0347 tRNA-dihydrouridine synthase B
YP_944502.1	PFAM: helix-turn-helix, Fis-type; KEGG: vpa:VP2885 factor-for-inversion stimulation protein
YP_944503.1	PFAM: protein of unknown function DUF416; KEGG: sbo:SBO_4020 hypothetical protein
YP_944504.1	PFAM: histone family protein DNA-binding protein; KEGG: vvy:VV3145 bacterial nucleoid DNA-binding protein
YP_944505.1	KEGG: vpa:VP2898 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201
YP_944506.1	KEGG: vpa:VP2896 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme, formylation region
YP_944508.1	KEGG: vfi:VF2402 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D)
YP_944509.1	PFAM: NUDIX hydrolase; KEGG: ilo:IL2307 NUDIX family pyrophosphohydrolases containing a Zn-finger
YP_944510.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_944511.1	PFAM: peptidase M23B; KEGG: vch:VCA0079 hypothetical protein
YP_944513.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_944514.1	PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdn:Sden_2972 protein of unknown function DUF335, SprT
YP_944515.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vpa:VP0954 RNA methyltransferase, TrmH family
YP_944516.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV2686 ribosomal-protein-alanine acetyltransferase
YP_944517.1	KEGG: ppr:PBPRA0623 putative DNA polymerase III, psi subunit
YP_944518.1	PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_3682 FAD dependent oxidoreductase
YP_944519.1	regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon
YP_944520.1	PFAM: adenylosuccinate synthetase; KEGG: vpa:VP2812 adenylosuccinate synthetase
YP_944521.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: cps:CPS_0328 HflC protein
YP_944522.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pha:PSHAa0273 hypothetical protein
YP_944523.1	PFAM: GTP-binding protein, HSR1-related; KEGG: pat:Patl_3979 GTP-binding protein, HSR1-related
YP_944524.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: pat:Patl_3978 RNA chaperone Hfq
YP_944525.1	KEGG: ppr:PBPRA3351 putative tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_944526.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: vpa:VP2819 DNA mismatch repair protein MutL
YP_944527.1	PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: ppr:PBPRA3353 putative N-acetylmuramoyl-L-alanine amidase
YP_944528.1	PFAM: protein of unknown function UPF0079; KEGG: vvy:VV3075 predicted ATPase or kinase
YP_944529.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: ppr:PBPRA3355 hypothetical protein
YP_944530.1	TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: vpa:VP2822 iron-sulfur cluster-binding protein
YP_944531.1	KEGG: cbu:CBU_1466 hypothetical protein
YP_944532.1	KEGG: ppr:PBPRB0433 hypothetical protein
YP_944533.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pha:PSHAb0105 putative transcriptional regulator (LysR family)
YP_944534.1	KEGG: csa:Csal_0488 hypothetical protein
YP_944535.1	KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH
YP_944536.1	KEGG: pen:PSEEN0968 outer membrane autotransporter
YP_944537.1	KEGG: son:SO0850 hypothetical protein
YP_944538.1	KEGG: son:SO0851 hypothetical protein
YP_944539.1	KEGG: son:SO0852 type IV pilus assembly protein PilV
YP_944540.1	KEGG: son:SO0853 pilin, putative
YP_944541.1	KEGG: csa:Csal_0493 methylation
YP_944542.1	KEGG: vpa:VPA0254 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_944543.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: son:SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_944544.1	PFAM: protein of unknown function DUF88; KEGG: son:SO3490 hypothetical protein
YP_944545.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pat:Patl_2135 DEAD/DEAH box helicase-like
YP_944546.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvy:VV1708 ABC-type transport system, ATPase component
YP_944547.1	KEGG: son:SO1154 hypothetical protein
YP_944548.1	PFAM: aldo/keto reductase; KEGG: vfi:VFA0836 Tas protein
YP_944549.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: vch:VC0711 clpB protein
YP_944550.1	PFAM: protein of unknown function DUF152; KEGG: vch:VC0710 conserved hypothetical protein
YP_944551.1	KEGG: eca:ECA3347 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_944552.1	KEGG: sdn:Sden_2864 putative lipoprotein
YP_944553.1	PFAM: nitrogen regulatory protein P-II; KEGG: cps:CPS_3917 Nitrogen regulatory protein P-II
YP_944554.1	KEGG: pha:PSHAa0921 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_944555.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: ppr:PBPRA0593 putative peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_944556.1	KEGG: son:SO3531 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II
YP_944557.1	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: vpa:VP0534 isoleucyl-tRNA synthetase
YP_944558.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: vpa:VP0533 riboflavin kinase/FMN adenylyltransferase
YP_944559.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: vfi:VF0465 virulence factor MviN
YP_944560.1	PFAM: ribosomal protein S20; KEGG: ppr:PBPRA0587 putative ribosomal protein S20
YP_944563.1	TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: vpa:VP2838 lysyl-tRNA synthetase-related protein
YP_944564.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_944565.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_944566.1	PFAM: fumarate reductase, subunit C; KEGG: cvi:CV3367 fumarate reductase, subunit C
YP_944567.1	PFAM: fumarate reductase, D subunit; KEGG: vpa:VP2843 fumarate reductase, 13 kDa hydrophobic protein
YP_944568.1	TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; KEGG: vpa:VP2845 elongation factor P
YP_944569.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: vfi:VF2339 lysine 2,3-aminomutase
YP_944570.1	KEGG: pat:Patl_0438 hypothetical protein
YP_944571.1	TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: sdn:Sden_1383 D,D-heptose 1,7-bisphosphate phosphatase
YP_944572.1	KEGG: sdn:Sden_2541 lipoprotein, putative
YP_944573.1	PFAM: protein of unknown function UPF0066; KEGG: ypa:YPA_0546 hypothetical protein
YP_944574.1	PFAM: Rhomboid family protein; KEGG: pha:PSHAa2191 rhomboid protein
YP_944575.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_944576.1	PFAM: alpha/beta hydrolase fold; KEGG: ppr:PBPRB1931 hypothetical lysophospholipase L2
YP_944577.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cvi:CV0977 hypothetical protein
YP_944578.1	KEGG: vch:VC0132 hypothetical protein
YP_944579.1	KEGG: ppr:PBPRA0599 hypothetical D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C
YP_944580.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_944581.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_944582.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_944583.1	PFAM: protein of unknown function DUF904; KEGG: vvy:VV3019 hypothetical protein
YP_944584.1	PFAM: protein of unknown function DUF1653; KEGG: ilo:IL1584 hypothetical protein
YP_944585.1	catalyzes the O-acetylation of serine
YP_944586.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: spt:SPA3904 ferrous iron efflux protein F
YP_944587.1	TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: ppr:PBPRA0229 putative rRNA methylase, SpoU family
YP_944588.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: ppr:PBPRA0568 putative single-stranded-DNA-specific exonuclease RecJ
YP_944589.1	KEGG: son:SO0951 thiol:disulfide interchange protein DsbC
YP_944590.1	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sfx:S3079 site-specific recombinase
YP_944591.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic
YP_944592.1	PFAM: formate/nitrite transporter; KEGG: yps:YPTB1409 putative FNT family formate efflux transporter focA
YP_944593.1	KEGG: yps:YPTB1408 formate acetyltransferase 1; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL
YP_944594.1	activates pyruvate formate-lyase 1 under anaerobic conditions
YP_944595.1	PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: vfi:VF1796 23S rRNA m(1)G 745 methyltransferase
YP_944596.1	PFAM: protein of unknown function DUF412; KEGG: yps:YPTB2595 hypothetical protein
YP_944597.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_944598.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_944599.1	KEGG: cps:CPS_4405 conserved hypothetical protein
YP_944600.1	PFAM: protein of unknown function UPF0118; KEGG: sdn:Sden_2360 protein of unknown function UPF0118
YP_944601.1	PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: vch:VC2033 alcohol dehydrogenase/acetaldehyde dehydrogenase
YP_944602.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_944603.1	KEGG: pen:PSEEN0412 sensory box proten ; GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_944604.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_944605.1	PFAM: extracellular solute-binding protein, family 3; Lytic transglycosylase, catalytic; KEGG: ppr:PBPRA0787 putative transglycosylase, Slt family
YP_944608.1	KEGG: cps:CPS_3294 hypothetical protein
YP_944609.1	KEGG: ava:Ava_5067 formylmethionine deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_944610.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sdn:Sden_1271 CMP/dCMP deaminase, zinc-binding
YP_944611.1	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: vfi:VF2188 type 4 prepilin peptidase
YP_944612.1	PFAM: nucleoside diphosphate kinase; KEGG: vpa:VP0604 nucleoside diphosphate kinase
YP_944613.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vvy:VV2535 hypothetical protein
YP_944614.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: gsu:GSU1927 sensory box/response regulator
YP_944615.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: hch:HCH_03646 signal transduction histidine kinase
YP_944616.1	KEGG: hch:HCH_03645 ABC-type uncharacterized transport system, periplasmic component
YP_944617.1	KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component
YP_944618.1	KEGG: hch:HCH_03643 hypothetical protein
YP_944619.1	PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03642 major facilitator superfamily protein
YP_944620.1	TIGRFAM: diaminopimelate epimerase; KEGG: hch:HCH_03641 diaminopimelate epimerase
YP_944621.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_944622.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_944623.1	KEGG: ilo:IL2302 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related
YP_944624.1	TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ppr:PBPRA3596 putative threonine dehydratase
YP_944625.1	PFAM: Ion transport 2 domain protein,; KEGG: pha:PSHAa0137 potassium channel protein
YP_944626.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative
YP_944627.1	PFAM: periplasmic binding protein; KEGG: vfi:VFA0973 ABC transporter, periplasmic component
YP_944628.1	PFAM: transport system permease protein; KEGG: dra:DRB0015 putative hemin transport system permease protein
YP_944629.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_1545 ABC transporter, ATPase subunit
YP_944630.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ava:Ava_2465 MotA/TolQ/ExbB proton channel
YP_944631.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: syf:Synpcc7942_2428 biopolymer transport ExbD like protein
YP_944632.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppr:PBPRA2103 hypothetical TonB protein
YP_944633.1	PFAM: SapC family protein; KEGG: sil:SPO2717 SapC protein, putative
YP_944634.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; KEGG: cps:CPS_0931 oxidoreductase, zinc-binding
YP_944635.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cps:CPS_3111 alcohol dehydrogenase, iron-containing
YP_944636.1	PFAM: ThiJ/PfpI domain protein; KEGG: cps:CPS_0933 ThiJ/PfpI family protein
YP_944637.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_0934 transcriptional regulator, LysR family
YP_944638.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pfo:Pfl_4939 transcriptional regulator, AsnC family
YP_944639.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: hch:HCH_05146 2-isopropylmalate synthase
YP_944640.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_944641.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: gsu:GSU1372 3-hydroxyisobutyrate dehydrogenase family protein
YP_944642.1	PFAM: protein of unknown function UPF0227; KEGG: vpa:VP0429 hypothetical protein
YP_944643.1	PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: vch:VC2433 cyclic AMP phosphodiesterase
YP_944644.1	PFAM: NUDIX hydrolase; KEGG: ppr:PBPRA0451 putative MutT/nudix family protein
YP_944645.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: vvy:VV0583 outer membrane protein
YP_944646.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_944647.1	PFAM: cyclic nucleotide-binding; ATP-binding region, ATPase domain protein domain protein; KEGG: ppr:PBPRA1212 putative response regulator
YP_944648.1	KEGG: eca:ECA1174 hypothetical protein
YP_944649.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_944650.1	KEGG: pha:PSHAa0946 tRNA (guanine-7-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase
YP_944651.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: vch:VC0562 16S rRNA processing protein RimM
YP_944652.1	PFAM: ribosomal protein S16; KEGG: cps:CPS_4069 ribosomal protein S16
YP_944653.1	KEGG: son:SO1356 signal recognition particle protein Ffh; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_944654.1	PFAM: cytochrome c assembly protein; KEGG: vfi:VF0547 CcsA-related protein
YP_944655.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pat:Patl_1668 protein of unknown function DUF21
YP_944656.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_944657.1	KEGG: cps:CPS_4077 putative lipoprotein
YP_944658.1	TIGRFAM: glutamate--cysteine ligase; KEGG: ppr:PBPRA3047 putative glutamate-cysteine ligase
YP_944659.1	KEGG: son:SO3561 hypothetical protein
YP_944660.1	KEGG: vpa:VP2543 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
YP_944661.1	catalyzes the formation of pyruvate from oxaloacetate
YP_944662.1	TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; KEGG: ilo:IL1736 oxaloacetate decarboxylase, gamma subunit
YP_944663.1	PFAM: carbon storage regulator; KEGG: pat:Patl_3014 carbon storage regulator, CsrA
YP_944664.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_944665.1	KEGG: pat:Patl_3015 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase, class IIc; phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD
YP_944666.1	KEGG: stm:STM2829 DNA strand exchange and recombination protein with proteiase and nuclease activity; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_944667.1	PFAM: CinA domain protein; KEGG: vch:VC0542 competence/damage-inducible protein CinA C-terminal domain
YP_944668.1	TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: plu:plu0722 DNA mismatch repair protein MutS
YP_944670.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sde:Sde_0637 metal dependent phosphohydrolase
YP_944671.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_944672.1	KEGG: sdn:Sden_3057 hypothetical protein
YP_944673.1	KEGG: son:SO0942 hypothetical protein
YP_944674.1	PFAM: protein of unknown function DUF519; KEGG: tcx:Tcr_1053 protein of unknown function DUF519
YP_944675.1	PFAM: major facilitator superfamily MFS_1; KEGG: sdn:Sden_3314 major facilitator superfamily MFS_1
YP_944676.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ppr:PBPRA3289 putative single-strand binding protein
YP_944677.1	KEGG: vfi:VFA0276 sensory transduction/GGDEF family protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein
YP_944678.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dar:Daro_2752 metal-dependent phosphohydrolase, HD subdomain
YP_944679.1	converts asparagine to aspartate and ammonia
YP_944680.1	PFAM: Alternative oxidase; KEGG: vfi:VF0578 alternative oxidase
YP_944681.1	KEGG: psb:Psyr_4948 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_944682.1	PFAM: DTW domain containing protein; KEGG: ppr:PBPRA1746 conserved hypothetical protein
YP_944683.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: ppr:PBPRA0136 conserved hypothetical protein
YP_944686.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mca:MCA2450 molybdopterin-guanine dinucleotide biosynthesis protein MobB
YP_944687.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfl:PFL_1765 transporter, LysE family
YP_944688.1	PFAM: aldo/keto reductase; KEGG: vch:VCA0859 oxidoreductase, aldo/keto reductase 2 family
YP_944689.1	KEGG: vpa:VP2044 hypothetical protein
YP_944690.1	PFAM: Rhodanese domain protein; KEGG: pat:Patl_0964 rhodanese-like
YP_944691.1	PFAM: Alkaline phosphatase; KEGG: cps:CPS_3932 alkaline phosphatase family protein
YP_944692.1	PFAM: Alkaline phosphatase; KEGG: pha:PSHAa2976 alkaline phosphatase
YP_944693.1	KEGG: pha:PSHAa2975 hypothetical protein ; secreted protein
YP_944695.1	KEGG: cjr:CJE0702 chemotaxis protein MotB, putative
YP_944697.1	KEGG: vch:VC1764 hypothetical protein
YP_944699.1	KEGG: dps:DP1715 hypothetical protein
YP_944700.1	KEGG: vpa:VP2807 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein
YP_944701.1	Specifically methylates the ribose of guanosine 2251 in 23S rRNA
YP_944702.1	PFAM: ribosomal protein S6; KEGG: vpa:VP2740 ribosomal protein S6
YP_944703.1	PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ppr:PBPRA3338 putative Primosomal replication protein N
YP_944704.1	PFAM: ribosomal protein S18; KEGG: son:SO3928 ribosomal protein S18
YP_944705.1	PFAM: ribosomal protein L9; KEGG: vpa:VP2737 ribosomal protein L9
YP_944706.1	KEGG: sar:SAR1897 hypothetical protein
YP_944707.1	KEGG: mag:amb3955 exopolyphosphatase-related protein
YP_944708.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pub:SAR11_1297 glycine betaine/L-proline transport system permease
YP_944709.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1298 glycine betaine/L-proline transport ATP-binding protein
YP_944710.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pub:SAR11_1302 substrate-binding region of ABC-type glycine betaine transport system
YP_944711.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: plu:plu3548 lysyl-tRNA synthetase (lysine--tRNA ligase)
YP_944712.1	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: vch:VC0663 peptide chain release factor 2
YP_944713.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: ppr:PBPRA0425 putative acetolactate synthase III, largesubunit
YP_944714.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: ppr:PBPRA0426 putative acetolactate synthase III, small subunit
YP_944715.1	PFAM: protein of unknown function DUF461; KEGG: tcx:Tcr_1566 protein of unknown function DUF461
YP_944716.1	KEGG: pha:PSHAa0505 hypothetical protein
YP_944717.1	TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: ppr:PBPRA3321 putative sulfite reductase (NADPH) flavoprotein alpha-component
YP_944718.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_944719.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: vpa:VP2720 phosphoadenosine phosphosulfate reductase
YP_944720.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_944721.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: vpa:VP2771 elongation factor G
YP_944722.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_944723.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_944724.1	PFAM: DsrH family protein; KEGG: ppr:PBPRA0312 putative uncharacterized protein involved in oxidation of intracellular sulfur
YP_944725.1	PFAM: DsrE family protein; KEGG: pat:Patl_2453 DsrE-like protein
YP_944726.1	PFAM: DsrE family protein; KEGG: yps:YPTB3708 putative uncharacterized protein involved in oxidation of intracellular sulfur
YP_944727.1	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: mta:Moth_1495 YjgF-like protein
YP_944728.1	KEGG: sdn:Sden_0164 DNA-directed RNA polymerase, subunit beta-prime; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein
YP_944729.1	KEGG: son:SO0224 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3
YP_944730.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12-like; KEGG: sdy:SDY_3742 50S ribosomal subunit protein L7/L12
YP_944731.1	PFAM: ribosomal protein L10; KEGG: sdn:Sden_0161 ribosomal protein L10
YP_944732.1	PFAM: ribosomal protein L1; KEGG: son:SO0221 50S ribosomal protein L1
YP_944733.1	PFAM: ribosomal protein L11; KEGG: eca:ECA0219 50S ribosomal protein L11
YP_944734.1	KEGG: vvy:VV3164 transcription antiterminator; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_944735.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: vvy:VV3165 preprotein translocase subunit SecE
YP_944736.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_944737.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_944738.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: vvu:VV10775 predicted nucleoside-diphosphate sugar epimerase
YP_944739.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; sugar transferase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pen:PSEEN1504 UDP-glucose 4-epimerase
YP_944740.1	KEGG: neu:NE0499 glycosyl transferase, family 2
YP_944741.1	PFAM: Methyltransferase type 11; KEGG: ade:Adeh_2530 hypothetical protein
YP_944742.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpm:BURPS1710b_3159 polysaccharide ABC transporter, ATP-binding protein
YP_944743.1	PFAM: ABC-2 type transporter; KEGG: pfl:PFL_5495 ABC-2 type transporte
YP_944744.1	KEGG: sdn:Sden_2660 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_944745.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sdn:Sden_2661 dTDP-4-dehydrorhamnose reductase
YP_944746.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: vfi:VF0167 Glucose-1-phosphate thymidylyltransferase
YP_944747.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: vfi:VF0166 dTDP-glucose 4,6-dehydratase
YP_944748.1	KEGG: vvy:VV1006 transcription antiterminator; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein
YP_944749.1	PFAM: Rhomboid family protein; KEGG: sdn:Sden_3618 rhomboid-like protein
YP_944750.1	PFAM: Chorismate lyase; KEGG: cps:CPS_0125 putative chorismate--pyruvate lyase
YP_944751.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: vvy:VV0121 4-hydroxybenzoate polyprenyltransferase
YP_944752.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: vch:VC1917 hypothetical protein
YP_944753.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_944754.1	TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: vch:VC2637 peroxiredoxin family protein/glutaredoxin
YP_944755.1	TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: vch:VC0167 ATP-dependent DNA helicase Rep
YP_944756.1	PFAM: regulatory protein, TetR; KEGG: vpa:VP0040 transcriptional regulator, TetR family
YP_944757.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vvy:VV0038 membrane-fusion protein
YP_944758.1	PFAM: acriflavin resistance protein; KEGG: vfi:VF2524 acriflavin resistance plasma membrane protein
YP_944759.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: vvy:VV2639 UDP-glucose 4-epimerase
YP_944760.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_944761.1	KEGG: eca:ECA0140 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease
YP_944762.1	PFAM: peptidase M16 domain protein; KEGG: pha:PSHAb0349 putative TonB-dependent receptor protease/peptidase
YP_944763.1	PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: eca:ECA0032 D-tyrosyl-tRNA(Tyr) deacylase
YP_944764.1	RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease
YP_944765.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pat:Patl_1024 GTP-binding protein TypA
YP_944766.1	KEGG: vch:VC2746 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp
YP_944767.1	PFAM: glutamine synthetase, catalytic region; KEGG: pat:Patl_4201 glutamine synthetase, catalytic region
YP_944768.1	KEGG: vpa:VP0120 hypothetical protein
YP_944769.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: vpa:VP0119 nitrogen regulation protein
YP_944770.1	KEGG: son:SO4472 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_944771.1	KEGG: mmu:673901 hypothetical protein LOC673901 PROSITE: PHE_RICH SER_RICH
YP_944772.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: vfi:VFA0829 sodium/proline symporter
YP_944774.1	KEGG: vpa:VP0157 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_944775.1	PFAM: phospholipase A1; KEGG: pha:PSHAa0175 phospholipase A precursor
YP_944776.1	PFAM: GTP-binding protein, HSR1-related; KEGG: hch:HCH_03855 predicted GTPase
YP_944777.1	KEGG: hch:HCH_03856 hypothetical protein
YP_944778.1	specifically modifies tRNA at position G18
YP_944779.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA0273 putative Hydrogen peroxide-inducible genes activator
YP_944780.1	PFAM: ribosomal protein L17; KEGG: pmu:PM1389 50S ribosomal protein L17
YP_944781.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_944782.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_944783.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_944784.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_944785.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_944786.1	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: ppr:PBPRA0340 putative preprotein translocase, SecY subunit
YP_944787.1	PFAM: ribosomal protein L15; KEGG: ppr:PBPRA0339 putative ribosomal protein L15
YP_944788.1	PFAM: ribosomal protein L30; KEGG: vvy:VV0393 ribosomal protein L30/L7E
YP_944789.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_944790.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: ppr:PBPRA0336 putative ribosomal protein L18
YP_944791.1	PFAM: ribosomal protein L6; KEGG: stm:STM3425 50S ribosomal subunit protein L6
YP_944792.1	PFAM: ribosomal protein S8; KEGG: vvy:VV0389 ribosomal protein S8
YP_944793.1	PFAM: ribosomal protein S14; KEGG: pha:PSHAa2817 30S ribosomal subunit protein S14
YP_944794.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_944795.1	KEGG: sfx:S4421 50S ribosomal subunit protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_944796.1	TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: cps:CPS_0611 ribosomal protein L14
YP_944797.1	PFAM: ribosomal protein S17; KEGG: sfr:Sfri_0157 ribosomal protein S17
YP_944798.1	PFAM: ribosomal protein L29; KEGG: sdy:SDY_3488 50S ribosomal subunit protein L29
YP_944799.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_944800.1	KEGG: msu:MS2042 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein
YP_944801.1	TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: son:SO0236 50S ribosomal protein L22
YP_944802.1	TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: vch:VC2592 30S ribosomal protein S19
YP_944803.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_944804.1	PFAM: Ribosomal protein L25/L23; KEGG: pha:PSHAa0146 50S ribosomal protein L23
YP_944805.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_944806.1	PFAM: ribosomal protein L3; KEGG: pha:PSHAa0144 50S ribosomal subunit protein L3
YP_944807.1	PFAM: ribosomal protein S10; KEGG: bas:BUsg506 30S ribosomal protein S10
YP_944808.1	PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699, ATPase putative; KEGG: ppr:PBPRB2023 hypothetical protein
YP_944809.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sdn:Sden_1090 pseudouridine synthase, Rsu
YP_944810.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: vvy:VVA0445 CbbY family protein
YP_944811.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pat:Patl_1436 transcriptional regulator, LysR family
YP_944812.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cps:CPS_0817 alcohol dehydrogenase, class III
YP_944813.1	PFAM: putative esterase; KEGG: son:SOA0160 esterase, putative
YP_944814.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ppr:PBPRB0596 putative glyoxylase I family protein
YP_944815.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2540 acetyltransferase, GNAT family
YP_944816.1	KEGG: vfi:VFA0140 hypothetical protein
YP_944817.1	PFAM: oxidoreductase domain protein; KEGG: vpa:VPA1281 oxidoreductase, Gfo/Idh/MocA family
YP_944818.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ppr:PBPRA2942 putative lipoprotein YaeC
YP_944819.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA2941 putative ABC-type metal ion transport system,permease component
YP_944820.1	part of the metNIQ transport system for methionine
YP_944821.1	KEGG: sdn:Sden_0725 hypoxanthine-guanine phosphoribosyltransferase
YP_944822.1	PFAM: protein of unknown function DUF479; KEGG: vpa:VPA0844 hypothetical protein
YP_944823.1	KEGG: sdn:Sden_0279 hypothetical protein
YP_944824.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cvi:CV1630 probable oxidoreductase
YP_944825.1	KEGG: hch:HCH_06430 predicted transcription regulator, contains HTH domain (MarR family)
YP_944826.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_06432 TRAP-type C4-dicarboxylate transport system, large permease component
YP_944827.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component
YP_944828.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_06434 TRAP-type C4-dicarboxylate transport system, periplasmic component
YP_944829.1	PFAM: LamB/YcsF family protein; KEGG: ppr:PBPRA1281 hypothetical protein
YP_944830.1	PFAM: Allophanate hydrolase subunit 1; KEGG: ppr:PBPRA1282 hypothetical protein
YP_944831.1	KEGG: vpa:VPA0875 putative carboxylase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2
YP_944832.1	binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism
YP_944833.1	phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr
YP_944834.1	PFAM: PfkB domain protein; KEGG: ppr:PBPRA1574 putative 1-phosphofructokinase
YP_944835.1	TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: ppr:PBPRA1575 PTS system, fructose-specific IIBC component
YP_944836.1	TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: cac:CAC0726 ribose 5-phosphate isomerase RpiB
YP_944837.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_944838.1	PFAM: Lipocalin family protein; KEGG: son:SO1691 lipoprotein Blc
YP_944839.1	KEGG: vvy:VV2407 hypothetical protein
YP_944840.1	KEGG: sdn:Sden_3652 flageller protein FlgA
YP_944841.1	KEGG: vpa:VPA0275 putative flagellin
YP_944843.1	PFAM: StbA family protein; KEGG: ppr:PBPRA0050 hypothetical StbA plasmid stable inheritance protein
YP_944844.1	KEGG: vpa:VPA1533 putative flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase
YP_944845.1	PFAM: flagellar assembly protein FliH; KEGG: ppr:PBPRA0024 hypothetical flagellar assembly protein
YP_944846.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_944847.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella
YP_944848.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: vpa:VPA1537 putative flagellar hook-basal body complex protein
YP_944849.1	PFAM: OmpA/MotB domain protein; KEGG: vpa:VPA1539 putative sodium-type flagellar protein MotY precursor
YP_944850.1	TIGRFAM: flagellar hook-associated protein 3; KEGG: vpa:VPA0274 putative flagellar hook-associated protein
YP_944851.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: vpa:VPA0273 putative flagellar hook-associated protein
YP_944852.1	KEGG: vpa:VPA0272 putative flagellar protein FlgJ
YP_944853.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_944854.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_944855.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: vpa:VPA0269 putative flagellar basal-body rod protein
YP_944856.1	TIGRFAM: flagellar basal-body rod protein FlgF; KEGG: vpa:VPA0268 putative flagellar basal-body rod protein
YP_944857.1	the hook connects flagellar basal body to the flagellar filament; Vibrio parahaemolyticus protein is associated with the lateral flagella
YP_944858.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Vibrio parahaemolyticus protein in this cluster is associated with lateral flagella production
YP_944859.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: vpa:VPA0265 LfgC
YP_944860.1	TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: vpa:VPA0264 LfgB
YP_944861.1	PFAM: OmpA/MotB domain protein; KEGG: ppr:PBPRA0049 hypothetical chemotaxis LafU protein
YP_944862.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ypa:YPA_3044 putative flagellar motor transmembrane channel protein
YP_944863.1	PFAM: sigma-70 region 2 domain protein; KEGG: sdn:Sden_3633 RNA polymerase sigma factor, FliA/WhiG
YP_944865.1	PFAM: flagellar hook-length control protein; KEGG: vpa:VPA1553 putative flagellar hook-length control protein FliK
YP_944867.1	TIGRFAM: flagellar protein FliS; KEGG: sdn:Sden_3637 flagellar protein FliS
YP_944868.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: vpa:VPA1550 flagellar distal capping protein homolog LafB
YP_944869.1	PFAM: flagellin domain protein; KEGG: vpa:VPA1548 lateral flagellin LafA
YP_944870.1	PFAM: flagellin domain protein; KEGG: cvi:CV3011 flagellin D
YP_944871.1	PFAM: flagellin domain protein; KEGG: vpa:VPA1548 lateral flagellin LafA
YP_944874.1	PFAM: surface presentation of antigens (SPOA) protein; KEGG: zmo:ZMO0644 flagellar motor switch
YP_944875.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_944876.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: vpa:VPA1543 flagellar biosynthetic protein
YP_944877.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: vpa:VPA1544 putative flagellar biosynthetic protein FliR
YP_944878.1	TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: vpa:VPA1545 flagellar biosynthetic protein
YP_944879.1	PFAM: type III secretion FHIPEP protein; KEGG: vpa:VPA1546 flagellar biosynthesis protein
YP_944880.1	PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: vpa:VPA0262 putative negative regulator of flagellin synthesis FlgM
YP_944881.1	KEGG: vpa:VPA0261 putative flagella synthesis protein FlgN
YP_944882.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_944883.1	PFAM: dehydrogenase, E1 component; KEGG: dps:DPPB38 probable pyruvate dehydrogenase, E1 component, alpha subunit
YP_944884.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: dps:DPPB39 probable pyruvate dehydrogenase, E1 component, beta subunit
YP_944885.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; KEGG: mmc:Mmcs_1093 catalytic domain of components of various dehydrogenase complexes
YP_944886.1	KEGG: mmc:Mmcs_1094 phosphopantetheine-binding protein
YP_944887.1	TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alanine dehydrogenase/PNT domain protein; KEGG: pha:PSHAa1718 alanine dehydrogenase
YP_944888.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: vvy:VV1321 leucine-responsive regulatory protein
YP_944889.1	PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: ppr:PBPRB1491 putative suppressor for copper-sensitivity B precursor
YP_944890.1	PFAM: ribosomal protein L34; KEGG: pat:Patl_4315 ribosomal protein L34
YP_944891.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: vfi:VF0004 ribonuclease P protein component
YP_944892.1	PFAM: protein of unknown function DUF37; KEGG: son:SO0005 conserved hypothetical protein TIGR00278
YP_944893.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: ppr:PBPRA0003 putative inner membrane protein, 60 kDa
YP_944894.1	TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: vpa:VP0002 thiophene and furan oxidation protein ThdF
YP_944895.1	PFAM: porin, Gram-negative type; KEGG: vvu:VV20580 outer membrane protein
YP_944896.1	PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: dps:DP2501 hypothetical protein
YP_944897.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pae:PA0649 anthranilate synthase component II
YP_944898.1	TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: pat:Patl_0651 acetylornithine and succinylornithine aminotransferases
YP_944899.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_944900.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4737 iron-sulfur cluster-binding protein
YP_944901.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_944902.1	PFAM: DSBA oxidoreductase; KEGG: sdn:Sden_0285 DsbA oxidoreductase
YP_944903.1	KEGG: bce:BC3046 uridine kinase
YP_944904.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_944905.1	KEGG: sbo:SBO_3729 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region
YP_944906.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: eca:ECA0039 DNA-directed RNA polymerase omega chain
YP_944907.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: msu:MS1372 Ca2+/Na+ antiporter
YP_944908.1	KEGG: vfi:VF1388 dTDP-glucose 4,6-dehydratase
YP_944909.1	PFAM: protein of unknown function DUF1289; KEGG: cps:CPS_0317 hypothetical protein
YP_944910.1	PFAM: glutaredoxin; KEGG: son:SO2797 hypothetical protein
YP_944911.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: vch:VCA0644 NADH oxidase, putative
YP_944912.1	KEGG: vch:VCA0643 hypothetical protein
YP_944913.1	PFAM: regulatory protein, ArsR; KEGG: vvy:VVA0901 predicted transcriptional regulator
YP_944914.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ppr:PBPRA1422 conserved hypothetical protein
YP_944915.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: vpa:VPA0945 hypothetical protein
YP_944916.1	PFAM: permease; KEGG: sdn:Sden_0091 hypothetical protein
YP_944917.1	PFAM: major facilitator superfamily MFS_1; KEGG: ppr:PBPRA2207 putative transporter
YP_944918.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_944919.1	PFAM: regulatory protein, ArsR; KEGG: pfo:Pfl_2400 transcriptional regulator, ArsR family
YP_944920.1	KEGG: ppr:PBPRA2209 hypothetical phosphatase
YP_944921.1	PFAM: HemY domain protein; KEGG: ppr:PBPRA3531 hypothetical HemY protein
YP_944922.1	PFAM: protein of unknown function DUF513, hemX; KEGG: yps:YPTB0182 putative uroporphyrin-III C-methyltransferase
YP_944923.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: ppr:PBPRA3529 hypothetical uroporphyrinogen III synthase
YP_944924.1	KEGG: pha:PSHAa0098 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase
YP_944925.1	KEGG: cps:CPS_4821 hypothetical protein
YP_944926.1	KEGG: cps:CPS_2546 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
YP_944927.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1265 hypothetical protein
YP_944928.1	KEGG: ilo:IL0758 hypothetical protein
YP_944929.1	PFAM: glycosyl transferase, family 9; KEGG: vfi:VFA1075 possible heptosyltransferase
YP_944930.1	PFAM: dihydrodipicolinate reductase; KEGG: lpn:lpg0131 dihydropicolinate reductase
YP_944931.1	KEGG: vvy:VV2496 hypothetical protein
YP_944932.1	PFAM: histidine triad (HIT) protein; KEGG: ftl:FTL_1398 conservered hypothetical protein
YP_944933.1	PFAM: cobalamin synthesis protein, P47K; KEGG: pat:Patl_2908 cobalamin synthesis protein, P47K
YP_944934.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: ppr:PBPRA0197 hypothetical protein
YP_944935.1	PFAM: protein of unknown function DUF469; KEGG: vfi:VF1139 hypothetical protein
YP_944936.1	KEGG: pfo:Pfl_5296 acyl transferase region
YP_944937.1	Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein
YP_944938.1	PFAM: malonate decarboxylase gamma subunit; KEGG: mdcE; malonate decarboxylase, gamma subunit
YP_944939.1	KEGG: reu:Reut_B4928 malonate decarboxylase, beta subunit
YP_944940.1	PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: pfo:Pfl_5301 triphosphoribosyl-dephospho-CoA protein
YP_944941.1	KEGG: pae:PA0208 malonate decarboxylase alpha subunit
YP_944942.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psp:PSPPH_0442 malonate utilization transcriptional regulator
YP_944943.1	PFAM: NUDIX hydrolase; KEGG: wsu:WS0265 hypothetical protein
YP_944944.1	KEGG: tcx:Tcr_2088 amidohydrolase-like
YP_944948.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rfr:Rfer_1839 transcriptional regulator, GntR family
YP_944949.1	PFAM: Integrase, catalytic region; KEGG: sdn:Sden_3021 integrase, catalytic region
YP_944950.1	PFAM: transposase IS3/IS911 family protein; KEGG: son:SOA0146 ISSod1, transposase OrfA
YP_944951.1	PFAM: transposase IS200-family protein; KEGG: hma:rrnAC0815 probable transposase
YP_944952.1	PFAM: Asp/Glu racemase; KEGG: pol:Bpro_2119 Asp/Glu racemase
YP_944953.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_1476 TrapT family, DctM subunit, putative
YP_944954.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_1477 hypothetical protein
YP_944955.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_1478 C4-dicarboxylate transport system C4-dicarboxylate-binding protein, putative
YP_944956.1	PFAM: protein of unknown function DUF81; KEGG: eba:ebA1817 hypothetical protein
YP_944957.1	KEGG: son:SO2875 ISSod10, transposase OrfB
YP_944958.1	PFAM: NUDIX hydrolase; KEGG: wsu:WS0265 hypothetical protein
YP_944959.1	KEGG: tcx:Tcr_2091 hypothetical protein
YP_944960.1	required for the use of phosphonates and phosphite as phosphorus sources
YP_944961.1	TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: tcx:Tcr_2089 guanylate kinase/L-type calcium channel region
YP_944962.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tcx:Tcr_2088 amidohydrolase-like
YP_944963.1	KEGG: tcx:Tcr_2087 ABC transporter related; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase
YP_944964.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tcx:Tcr_2086 ABC transporter related
YP_944965.1	PFAM: phosphonate metabolism PhnJ; KEGG: tcx:Tcr_2085 phosphonate metabolism PhnJ
YP_944966.1	PFAM: phosphonate metabolism; KEGG: tcx:Tcr_2084 phosphonate metabolism
YP_944967.1	PFAM: phosphonate metabolism; KEGG: tcx:Tcr_2083 phosphonate metabolism protein
YP_944968.1	KEGG: tcx:Tcr_2082 putative PhnG protein
YP_944969.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_2081 phosphonate uptake transporter
YP_944970.1	KEGG: tcx:Tcr_2080 ABC transporter related; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_944971.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: tcx:Tcr_2079 phosphonate-binding periplasmic protein
YP_944972.1	TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tcx:Tcr_2078 transcriptional regulator, GntR family
YP_944973.1	TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: vfi:VFA0850 chloramphenicol-sensitive protein RarD
YP_944975.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bur:Bcep18194_B2439 glutathione S-transferase-like
YP_944976.1	PFAM: regulatory protein, TetR; KEGG: pae:PA3034 probable transcriptional regulator
YP_944977.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat
YP_944979.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sde:Sde_3558 putative cold-shock DNA-binding domain protein
YP_944980.1	PFAM: Thioredoxin domain; KEGG: ilo:IL2069 thioredoxin related protein
YP_944982.1	PFAM: protein of unknown function DUF214; KEGG: eba:ebA4058 putative ABC transporter protein
YP_944983.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3463 protein of unknown function DUF214
YP_944984.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3462 ABC transporter related
YP_944985.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA4062 HlyD family secretion protein
YP_944986.1	KEGG: sec:SC2750 putative glycoporin
YP_944987.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: son:SO2286 sulfate permease family protein
YP_944988.1	KEGG: ssn:SSO_3652 DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase
YP_944989.1	KEGG: sdy:SDY_4183 DNA polymerase III, beta-subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain
YP_944990.1	TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: hdu:HD0849 DNA replication and repair protein RecF
YP_944991.1	KEGG: vvy:VV0014 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II
YP_944992.1	PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: vvy:VVA0933 signal transduction histidine kinase
YP_944993.1	PFAM: MCP methyltransferase, CheR-type; KEGG: abo:ABO_1308 chemotaxis protein methyltransferase
YP_944994.1	PFAM: CheB methylesterase; KEGG: ana:all1847 similar to protein-glutamate methylesterase
YP_944995.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold domain protein; KEGG: tbd:Tbd_0085 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation
YP_944996.1	PFAM: branched-chain amino acid transport; KEGG: mac:MA3438 branched chain amino acid transport protein AzlD
YP_944997.1	PFAM: AzlC family protein; KEGG: mba:Mbar_A2616 hypothetical protein
YP_944998.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_944999.1	KEGG: vpa:VP0021 glycyl-tRNA synthetase, beta chain
YP_945000.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_945001.1	KEGG: sil:SPO3144 hypothetical protein
YP_945002.1	TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: sdy:SDY_4017 membrane-bound ATP synthase, F1 sector, epsilon-subunit
YP_945003.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_945004.1	KEGG: vfi:VF2565 ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit
YP_945005.1	KEGG: ppr:PBPRA3606 putative AtpA, ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein
YP_945006.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: vch:VC2767 ATP synthase F1, delta subunit
YP_945007.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: eca:ECA4516 ATP synthase B chain
YP_945008.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_945009.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_945010.1	PFAM: ATP synthase I chain; KEGG: ilo:IL2626 F0F1-type ATP synthase, subunit I
YP_945011.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sdn:Sden_3760 ParB-like partition proteins
YP_945012.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: son:SO4756 ParA family protein
YP_945013.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_945014.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_945015.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: plu:plu0050 protein mioC, involved in modulation of initiation at oriC, initiation of chromosome replication